Query 036039
Match_columns 508
No_of_seqs 199 out of 251
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 14:51:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036039.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036039hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sknp_ a.37.1.1 (P:) Skn-1 {C 58.7 2.9 0.00021 32.5 2.8 20 207-226 49-68 (74)
2 d1k1fa_ a.147.1.1 (A:) Bcr-Abl 37.4 12 0.00087 28.3 3.2 27 229-255 32-58 (67)
3 d2c35a1 a.60.8.2 (A:14-142) RN 31.5 16 0.0012 29.9 3.5 95 282-378 23-120 (129)
4 d1v9da_ a.207.1.1 (A:) Diaphan 27.6 2E+02 0.015 25.8 11.1 82 386-467 214-300 (332)
5 d1uklc_ a.38.1.1 (C:) SREBP-2 22.7 29 0.0021 24.8 3.1 22 227-251 33-54 (61)
6 d1wa8a1 a.25.3.1 (A:1-99) ESAT 22.2 1.4E+02 0.01 21.9 9.7 69 202-294 4-75 (99)
7 d1uz3a1 a.283.1.1 (A:13-102) E 21.3 79 0.0058 24.9 5.7 28 282-311 34-61 (90)
8 d1ykhb1 a.252.1.1 (B:2-130) RN 13.6 1.6E+02 0.012 23.8 6.1 33 363-395 81-113 (129)
9 d1zbdb_ g.50.1.1 (B:) Effector 12.9 1.2E+02 0.0085 24.0 4.9 39 365-403 1-39 (124)
10 d1uuja_ a.221.1.1 (A:) Lissenc 10.8 87 0.0063 23.8 3.1 19 447-465 1-19 (76)
No 1
>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}
Probab=58.72 E-value=2.9 Score=32.53 Aligned_cols=20 Identities=40% Similarity=0.617 Sum_probs=17.6
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q 036039 207 TLRRLAQNREAARKSRLRKK 226 (508)
Q Consensus 207 ~~RRLAQNREaARkSRlRKK 226 (508)
-.||=..|+-||+++|.||-
T Consensus 49 DIRRRGKNKvAAqnCRKRKl 68 (74)
T d1sknp_ 49 KIRRRGKNKVAARTCRQRRT 68 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccHHHHHHHHHhhh
Confidence 35888999999999999984
No 2
>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.42 E-value=12 Score=28.30 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=21.2
Q ss_pred HHHHHHhHHHHhhHHHHHHHHhhcccc
Q 036039 229 VQQLETSRIKLNQLEQELQRARSQVNF 255 (508)
Q Consensus 229 vqqLE~sr~kL~qLeqel~rar~qg~~ 255 (508)
-|.||.+|..+..|||||.+-|=.-+|
T Consensus 32 E~eLerCk~~irrLeqel~~ErF~~iY 58 (67)
T d1k1fa_ 32 EQELERAKASIRRLEQEVNQERFRMIY 58 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999877633333
No 3
>d2c35a1 a.60.8.2 (A:14-142) RNA polymerase II subunit RBP4 (RpoF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.47 E-value=16 Score=29.89 Aligned_cols=95 Identities=13% Similarity=0.126 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccccchhccCCCcchHHHHHhHhcCCCchHH--HHH
Q 036039 282 DDQRHISELRSGLNQHYSDGDLRIIVDAYISHYDEIFRLKGVAAKSDVFHLITGMWTTSAERCFLWMGGFRPSEL--IKM 359 (508)
Q Consensus 282 Eq~r~l~ELRaAL~s~~sD~ELr~LVd~vlsHY~eyfr~Ks~AAk~DVF~llSg~W~TPlER~FLWIGGfRPSel--lkL 359 (508)
|-...+...+..-...-.+.+|..+..+.+.|....-+.+...+...|..++...=.++.|.+ =|+..+|+.+ ++.
T Consensus 23 Ev~~iL~~~~~~~~~~~~~~~l~~~~~ktl~Yl~~fak~~~~es~~~~~~ll~~~~L~~~E~~--~i~Nl~P~~~~El~~ 100 (129)
T d2c35a1 23 EVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELA--CLANLCPETAEESKA 100 (129)
T ss_dssp HHHHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHHTCSCCSHHHHHHHHHHHHTSSCCHHHHH--HHHHHCCSSHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhcccCCCHHHHH--HHhCCCCCCHHHHHH
Confidence 333344444443333333567888888888765443334555566777777777678888887 4578888865 567
Q ss_pred HHhhCC-CCcHHHHHHHHHH
Q 036039 360 LISQLD-PLTEQQVMGIYSL 378 (508)
Q Consensus 360 L~~qLe-pLTeqQL~~I~~L 378 (508)
|++.++ .+|++++..|=+.
T Consensus 101 li~~l~~r~see~l~~iLd~ 120 (129)
T d2c35a1 101 LIPSLEGRFEDEELQQILDD 120 (129)
T ss_dssp HCGGGTTTSCHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHH
Confidence 788886 6899998877544
No 4
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.59 E-value=2e+02 Score=25.79 Aligned_cols=82 Identities=7% Similarity=0.052 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCCCc-hhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 036039 386 EEALSQGLEQLQQSLIETIAGGPVVD-GMQQ----MVVALGKLENLEGFVRQADNLRQQTLHQLRRILTVRQAARCFLVI 460 (508)
Q Consensus 386 EdALSqgMe~LQqsLAD~la~g~v~d-~~~q----ma~Am~KL~~Le~fl~qAD~LR~qTL~ql~~ILTprQAArfLLA~ 460 (508)
=..|..++..++..+..........+ +... +..|..++..|+..+.+++..-.+++.-.-+--+..+.-+|+--+
T Consensus 214 ~~~l~~~l~~~~~~l~~~~~~~~~~d~f~~~~~~Fl~~a~~~l~~l~~~~~~~~~~~~~~~~yfgEd~~~~~~~efF~~~ 293 (332)
T d1v9da_ 214 LDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDL 293 (332)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 34555666666666654322111111 2222 345778889999999999988877777665443444566787777
Q ss_pred HHHHHHH
Q 036039 461 GEYYGRL 467 (508)
Q Consensus 461 ~ey~~RL 467 (508)
..+...+
T Consensus 294 ~~F~~~~ 300 (332)
T d1v9da_ 294 HNFRNMF 300 (332)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7765444
No 5
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.72 E-value=29 Score=24.77 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=17.5
Q ss_pred HHHHHHHHhHHHHhhHHHHHHHHhh
Q 036039 227 AYVQQLETSRIKLNQLEQELQRARS 251 (508)
Q Consensus 227 aYvqqLE~sr~kL~qLeqel~rar~ 251 (508)
.||+.|+. ++..|++|....|.
T Consensus 33 ~YI~~Lq~---~~~~L~~e~~~L~~ 54 (61)
T d1uklc_ 33 DYIKYLQQ---VNHKLRQENMVLKL 54 (61)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHH
Confidence 69999999 57777788777664
No 6
>d1wa8a1 a.25.3.1 (A:1-99) ESAT-6 like protein EsxB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=22.22 E-value=1.4e+02 Score=21.91 Aligned_cols=69 Identities=22% Similarity=0.288 Sum_probs=45.0
Q ss_pred cccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHhhcccccCCCCCCCCCChhhhhhHHHHHHHHH
Q 036039 202 QLDAKTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLNQLEQELQRARSQVNFDPQLNLMNLSVPRAAIFDMEYARWLE 281 (508)
Q Consensus 202 ~~d~k~~RRLAQNREaARkSRlRKKaYvqqLE~sr~kL~qLeqel~rar~qg~~~~~~~~~~~~~sga~~F~~~Y~rWle 281 (508)
+.|+-.+++.|.+=+ .....|+. .|..|+..++.... -.-| .....|...|.+|-.
T Consensus 4 kvd~~~l~~~A~~~~----------~~~~~l~~---~l~~l~~~v~~l~~--~W~G---------~A~~af~~~~~~w~~ 59 (99)
T d1wa8a1 4 KTDAATLAQEAGNFE----------RISGDLKT---QIDQVESTAGSLQG--QWRG---------AAGTAAQAAVVRFQE 59 (99)
T ss_dssp SSCHHHHHHHHHHHH----------HHHHHHHH---HHHHHHHHHHHHHT--SCCS---------SHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH----------HHHHHHHH---HHHHHHHHHHHHHH--Hhhh---------hHHHHHHHHHHHHHH
Confidence 457888888886543 33445555 47777777776652 1222 456789999999988
Q ss_pred HHHHHHHHH---HHhh
Q 036039 282 DDQRHISEL---RSGL 294 (508)
Q Consensus 282 Eq~r~l~EL---RaAL 294 (508)
...+....| ...|
T Consensus 60 ~~~~l~~~L~~i~~~L 75 (99)
T d1wa8a1 60 AANKQKQELDEISTNI 75 (99)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 776655444 4444
No 7
>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.25 E-value=79 Score=24.87 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhhccCCCCchHHHHHHHHH
Q 036039 282 DDQRHISELRSGLNQHYSDGDLRIIVDAYI 311 (508)
Q Consensus 282 Eq~r~l~ELRaAL~s~~sD~ELr~LVd~vl 311 (508)
+....+.+||..| +++|++-+..|.++.
T Consensus 34 eke~lLt~LR~~L--~IS~eeHr~elrr~~ 61 (90)
T d1uz3a1 34 EKKDLLGELSKVL--SISTERHRAEVRRAV 61 (90)
T ss_dssp HHHHHHHHHHHHT--TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHhc
Confidence 7788899999887 456677777776665
No 8
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.60 E-value=1.6e+02 Score=23.80 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=25.3
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036039 363 QLDPLTEQQVMGIYSLQQSTQQAEEALSQGLEQ 395 (508)
Q Consensus 363 qLepLTeqQL~~I~~LqqstqqaEdALSqgMe~ 395 (508)
.++.=.+.|+.+|..|+.+.+.+|..+.+.+.+
T Consensus 81 ~~~~see~Q~~~i~~Le~E~~~~~~el~~~v~e 113 (129)
T d1ykhb1 81 GVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKK 113 (129)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445789999999999999998887766554
No 9
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=12.91 E-value=1.2e+02 Score=24.04 Aligned_cols=39 Identities=15% Similarity=0.171 Sum_probs=27.2
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036039 365 DPLTEQQVMGIYSLQQSTQQAEEALSQGLEQLQQSLIET 403 (508)
Q Consensus 365 epLTeqQL~~I~~LqqstqqaEdALSqgMe~LQqsLAD~ 403 (508)
++||+++...|.++-++-...+..-.+.+.++.+.+.+.
T Consensus 1 ~~LT~eE~~~i~~VL~r~~~l~~~E~~rl~~l~~~l~~~ 39 (124)
T d1zbdb_ 1 EELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETM 39 (124)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468988888887766666666666667777777766554
No 10
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.79 E-value=87 Score=23.83 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=16.7
Q ss_pred hcCHHHHHHHHHHHHHHHH
Q 036039 447 ILTVRQAARCFLVIGEYYG 465 (508)
Q Consensus 447 ILTprQAArfLLA~~ey~~ 465 (508)
|||++|+.+-=-||.+|+.
T Consensus 1 iLt~rQ~eeL~kaI~~Yl~ 19 (76)
T d1uuja_ 1 VLSQRQRDELNRAIADYLR 19 (76)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 7999999998889999884
Done!