Query 036040
Match_columns 338
No_of_seqs 346 out of 2152
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 08:50:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036040.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036040hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0569 Permease of the major 100.0 4.6E-33 1E-37 243.6 22.1 287 1-325 183-472 (485)
2 TIGR00887 2A0109 phosphate:H+ 100.0 3.1E-31 6.7E-36 241.9 25.0 298 1-320 203-501 (502)
3 KOG0252 Inorganic phosphate tr 100.0 1.3E-29 2.9E-34 214.2 17.3 291 1-324 224-514 (538)
4 KOG0253 Synaptic vesicle trans 100.0 2.9E-27 6.4E-32 194.5 22.1 287 1-315 229-527 (528)
5 TIGR01299 synapt_SV2 synaptic 100.0 5.6E-28 1.2E-32 224.7 19.5 288 1-315 333-741 (742)
6 KOG0254 Predicted transporter 99.9 1.4E-24 3E-29 198.3 22.3 287 1-325 208-501 (513)
7 PF00083 Sugar_tr: Sugar (and 99.9 1.7E-29 3.7E-34 228.0 -10.1 278 1-321 170-450 (451)
8 TIGR00898 2A0119 cation transp 99.9 5.1E-24 1.1E-28 195.1 17.6 263 1-317 242-504 (505)
9 PRK10077 xylE D-xylose transpo 99.9 1.6E-22 3.6E-27 184.0 22.8 279 1-323 193-473 (479)
10 TIGR00879 SP MFS transporter, 99.9 1.5E-21 3.1E-26 177.5 21.2 281 1-316 195-479 (481)
11 PRK10642 proline/glycine betai 99.9 8.6E-22 1.9E-26 179.3 17.5 246 1-315 191-437 (490)
12 KOG0255 Synaptic vesicle trans 99.8 9.8E-19 2.1E-23 160.7 19.0 273 1-323 233-508 (521)
13 PRK09952 shikimate transporter 99.8 1.7E-18 3.8E-23 155.5 17.1 237 1-311 198-436 (438)
14 COG2271 UhpC Sugar phosphate p 99.8 1.5E-18 3.2E-23 146.8 12.8 243 1-305 184-431 (448)
15 PRK10406 alpha-ketoglutarate t 99.7 4.4E-17 9.4E-22 146.3 16.0 231 1-314 197-429 (432)
16 PRK11551 putative 3-hydroxyphe 99.7 5.3E-17 1.1E-21 144.8 16.0 166 110-307 230-395 (406)
17 PRK11273 glpT sn-glycerol-3-ph 99.7 7.2E-17 1.6E-21 145.7 17.0 184 103-317 256-444 (452)
18 PRK11663 regulatory protein Uh 99.7 3.8E-17 8.3E-22 146.7 14.7 177 105-312 248-429 (434)
19 TIGR00903 2A0129 major facilit 99.7 5.2E-17 1.1E-21 142.1 14.3 168 103-309 195-366 (368)
20 PRK12307 putative sialic acid 99.7 2.2E-16 4.7E-21 141.7 18.5 138 113-268 244-381 (426)
21 PRK09556 uhpT sugar phosphate 99.7 1.3E-16 2.7E-21 144.7 16.6 185 102-306 260-447 (467)
22 TIGR02332 HpaX 4-hydroxyphenyl 99.7 1.3E-16 2.9E-21 142.1 16.2 162 103-297 245-410 (412)
23 TIGR00891 2A0112 putative sial 99.7 2.9E-16 6.2E-21 139.8 17.1 140 111-269 249-389 (405)
24 PRK10489 enterobactin exporter 99.7 2.5E-16 5.4E-21 140.9 14.0 172 117-321 240-413 (417)
25 PRK03893 putative sialic acid 99.7 4.6E-16 1E-20 142.4 15.4 150 117-297 292-442 (496)
26 TIGR01299 synapt_SV2 synaptic 99.7 2.8E-16 6E-21 147.0 13.9 194 98-311 165-358 (742)
27 TIGR00890 2A0111 Oxalate/Forma 99.7 8.6E-16 1.9E-20 135.3 15.7 153 119-302 224-376 (377)
28 TIGR02332 HpaX 4-hydroxyphenyl 99.7 1.3E-15 2.8E-20 135.9 15.7 188 98-312 6-194 (412)
29 TIGR00893 2A0114 d-galactonate 99.7 1.7E-15 3.7E-20 134.2 16.4 174 104-304 219-395 (399)
30 PRK15075 citrate-proton sympor 99.7 2.2E-15 4.8E-20 135.4 16.4 146 107-269 245-393 (434)
31 TIGR00883 2A0106 metabolite-pr 99.7 1.2E-15 2.6E-20 135.2 14.4 167 103-298 222-391 (394)
32 TIGR00894 2A0114euk Na(+)-depe 99.7 7.9E-15 1.7E-19 133.1 20.0 183 102-310 263-452 (465)
33 TIGR00895 2A0115 benzoate tran 99.7 3.1E-15 6.8E-20 132.8 15.8 145 103-267 253-397 (398)
34 TIGR00712 glpT glycerol-3-phos 99.7 1.2E-15 2.5E-20 137.3 12.3 178 105-311 256-437 (438)
35 PRK10213 nepI ribonucleoside t 99.7 2.7E-15 5.9E-20 133.0 14.5 181 98-311 18-199 (394)
36 TIGR00891 2A0112 putative sial 99.6 3E-15 6.5E-20 133.3 14.5 184 97-311 9-192 (405)
37 PRK11663 regulatory protein Uh 99.6 3.2E-15 6.8E-20 134.4 14.1 177 101-310 24-201 (434)
38 TIGR00889 2A0110 nucleoside tr 99.6 4.8E-15 1E-19 132.2 14.9 180 119-313 227-408 (418)
39 PRK03545 putative arabinose tr 99.6 4.2E-15 9E-20 131.8 13.7 173 106-311 15-188 (390)
40 COG2271 UhpC Sugar phosphate p 99.6 9.6E-16 2.1E-20 129.9 8.9 185 92-309 21-208 (448)
41 TIGR00899 2A0120 sugar efflux 99.6 1.3E-14 2.9E-19 127.9 16.0 156 120-309 219-375 (375)
42 COG2814 AraJ Arabinose efflux 99.6 6.3E-15 1.4E-19 126.3 13.0 175 101-308 14-189 (394)
43 TIGR00895 2A0115 benzoate tran 99.6 3.2E-15 6.9E-20 132.7 11.5 178 101-311 18-196 (398)
44 PRK11551 putative 3-hydroxyphe 99.6 5.8E-15 1.3E-19 131.6 12.9 182 97-311 12-194 (406)
45 PRK15011 sugar efflux transpor 99.6 1.5E-14 3.2E-19 128.4 15.3 160 116-309 232-392 (393)
46 TIGR00710 efflux_Bcr_CflA drug 99.6 1E-14 2.2E-19 129.0 13.9 172 109-313 14-186 (385)
47 PRK11010 ampG muropeptide tran 99.6 1.1E-14 2.4E-19 132.4 14.1 163 120-310 242-405 (491)
48 PRK09705 cynX putative cyanate 99.6 4.6E-14 9.9E-19 125.2 16.8 176 107-315 212-389 (393)
49 PRK14995 methyl viologen resis 99.6 1.6E-14 3.4E-19 131.9 14.2 180 99-311 5-186 (495)
50 PRK10406 alpha-ketoglutarate t 99.6 4.9E-14 1.1E-18 126.6 16.8 200 101-311 23-222 (432)
51 PRK12307 putative sialic acid 99.6 1.5E-14 3.3E-19 129.8 13.4 164 101-297 19-182 (426)
52 PLN00028 nitrate transmembrane 99.6 2.3E-14 5E-19 130.1 14.5 164 109-307 261-432 (476)
53 TIGR00893 2A0114 d-galactonate 99.6 1.2E-14 2.6E-19 128.7 11.5 166 114-312 8-174 (399)
54 KOG2533 Permease of the major 99.6 1.1E-14 2.4E-19 130.0 11.1 226 1-291 205-439 (495)
55 PRK10473 multidrug efflux syst 99.6 2.4E-14 5.2E-19 127.1 13.3 176 104-312 7-183 (392)
56 PLN00028 nitrate transmembrane 99.6 4.5E-14 9.7E-19 128.2 14.9 184 100-308 36-219 (476)
57 TIGR00711 efflux_EmrB drug res 99.6 1.1E-14 2.3E-19 133.0 10.9 176 103-311 5-181 (485)
58 TIGR00887 2A0109 phosphate:H+ 99.6 7.9E-14 1.7E-18 127.6 16.5 162 149-312 58-229 (502)
59 TIGR00881 2A0104 phosphoglycer 99.6 7.5E-15 1.6E-19 129.4 9.5 169 110-311 5-175 (379)
60 PRK10504 putative transporter; 99.6 3.2E-14 7E-19 129.3 13.6 176 102-310 12-188 (471)
61 PRK05122 major facilitator sup 99.6 1E-13 2.3E-18 123.3 16.6 164 115-313 231-394 (399)
62 PRK15402 multidrug efflux syst 99.6 4.9E-14 1.1E-18 125.7 14.4 179 101-312 14-193 (406)
63 PRK03545 putative arabinose tr 99.6 1.2E-13 2.6E-18 122.5 16.7 156 116-305 221-377 (390)
64 PF07690 MFS_1: Major Facilita 99.6 2.2E-14 4.7E-19 125.3 11.4 162 109-303 5-167 (352)
65 KOG2532 Permease of the major 99.6 2.2E-13 4.8E-18 121.4 18.0 242 1-307 194-446 (466)
66 PRK03893 putative sialic acid 99.6 4.4E-14 9.5E-19 129.4 13.7 179 99-310 19-197 (496)
67 PRK03699 putative transporter; 99.6 2.9E-14 6.4E-19 126.5 12.1 172 105-310 210-382 (394)
68 PRK03699 putative transporter; 99.6 1.5E-13 3.2E-18 122.1 16.5 173 101-305 8-180 (394)
69 PRK10091 MFS transport protein 99.6 4.7E-14 1E-18 124.7 13.2 176 103-311 6-182 (382)
70 PRK10054 putative transporter; 99.6 3.9E-14 8.5E-19 125.6 12.7 174 104-311 11-186 (395)
71 TIGR00924 yjdL_sub1_fam amino 99.6 4.3E-14 9.3E-19 128.0 13.1 170 101-303 11-187 (475)
72 PRK10642 proline/glycine betai 99.6 1.3E-13 2.9E-18 125.8 16.2 199 102-311 18-216 (490)
73 TIGR00903 2A0129 major facilit 99.6 3.2E-14 7E-19 124.5 11.5 165 114-312 5-170 (368)
74 PRK15462 dipeptide/tripeptide 99.6 9.5E-14 2E-18 124.4 14.6 170 102-303 11-184 (493)
75 TIGR00879 SP MFS transporter, 99.6 4.6E-14 1E-18 128.3 12.6 180 110-311 38-220 (481)
76 PF11700 ATG22: Vacuole efflux 99.5 4.6E-13 9.9E-18 120.2 18.5 188 101-314 282-474 (477)
77 PRK10207 dipeptide/tripeptide 99.5 8.3E-14 1.8E-18 126.3 13.6 168 99-298 13-184 (489)
78 PRK10077 xylE D-xylose transpo 99.5 1E-13 2.3E-18 126.3 13.9 158 149-311 57-218 (479)
79 PRK09528 lacY galactoside perm 99.5 6.6E-14 1.4E-18 125.4 11.9 137 152-309 267-405 (420)
80 TIGR00894 2A0114euk Na(+)-depe 99.5 5.1E-14 1.1E-18 127.8 10.9 143 149-310 78-222 (465)
81 PRK15403 multidrug efflux syst 99.5 1.4E-13 3E-18 122.8 13.5 162 118-312 34-196 (413)
82 KOG1330 Sugar transporter/spin 99.5 3.5E-15 7.5E-20 127.8 2.9 185 100-316 33-218 (493)
83 PRK11652 emrD multidrug resist 99.5 2.5E-13 5.4E-18 120.6 14.9 179 101-312 9-188 (394)
84 TIGR00892 2A0113 monocarboxyla 99.5 5.3E-14 1.2E-18 127.0 10.6 163 108-303 249-416 (455)
85 PRK11273 glpT sn-glycerol-3-ph 99.5 2.5E-13 5.4E-18 122.8 14.8 165 117-311 46-212 (452)
86 TIGR00900 2A0121 H+ Antiporter 99.5 1.3E-13 2.9E-18 120.8 12.2 164 114-305 13-176 (365)
87 PRK09874 drug efflux system pr 99.5 5.8E-13 1.3E-17 118.9 16.5 176 106-310 20-196 (408)
88 TIGR00712 glpT glycerol-3-phos 99.5 1.3E-13 2.8E-18 124.1 12.0 181 101-310 28-209 (438)
89 COG2814 AraJ Arabinose efflux 99.5 1E-12 2.2E-17 112.9 16.5 168 105-306 216-384 (394)
90 PRK09556 uhpT sugar phosphate 99.5 8.9E-14 1.9E-18 126.2 10.1 189 96-309 25-214 (467)
91 TIGR00881 2A0104 phosphoglycer 99.5 3.3E-13 7.2E-18 118.9 13.2 148 105-268 221-370 (379)
92 PRK09874 drug efflux system pr 99.5 6E-13 1.3E-17 118.8 14.5 133 152-305 263-395 (408)
93 PRK15075 citrate-proton sympor 99.5 1.2E-12 2.7E-17 117.6 16.3 185 101-296 16-200 (434)
94 TIGR02718 sider_RhtX_FptX side 99.5 8.7E-13 1.9E-17 117.0 15.0 161 117-303 225-386 (390)
95 PRK12382 putative transporter; 99.5 1.1E-12 2.3E-17 116.5 15.6 156 115-305 231-386 (392)
96 TIGR00890 2A0111 Oxalate/Forma 99.5 9.2E-14 2E-18 122.4 8.7 166 110-309 13-179 (377)
97 PRK12382 putative transporter; 99.5 3.6E-13 7.8E-18 119.6 12.5 168 107-299 22-190 (392)
98 PRK11102 bicyclomycin/multidru 99.5 1.9E-13 4.1E-18 120.7 10.6 160 119-311 10-170 (377)
99 cd06174 MFS The Major Facilita 99.5 1.9E-12 4.2E-17 112.7 16.6 171 103-306 178-350 (352)
100 TIGR00902 2A0127 phenyl propri 99.5 1.6E-12 3.6E-17 114.9 16.2 160 110-304 215-375 (382)
101 TIGR00886 2A0108 nitrite extru 99.5 4.4E-13 9.5E-18 117.8 12.5 184 104-310 5-191 (366)
102 PRK11043 putative transporter; 99.5 1E-12 2.3E-17 116.9 14.7 159 119-310 25-183 (401)
103 PRK05122 major facilitator sup 99.5 6E-13 1.3E-17 118.4 13.0 180 105-309 20-200 (399)
104 TIGR00897 2A0118 polyol permea 99.5 3.3E-12 7.2E-17 113.7 16.9 173 105-307 227-400 (402)
105 TIGR00892 2A0113 monocarboxyla 99.5 5.7E-13 1.2E-17 120.3 12.1 158 115-305 34-191 (455)
106 PRK09952 shikimate transporter 99.5 3E-12 6.4E-17 115.2 16.0 153 154-311 71-223 (438)
107 PRK11902 ampG muropeptide tran 99.4 1.7E-12 3.7E-17 115.6 14.3 136 154-309 253-391 (402)
108 cd06174 MFS The Major Facilita 99.4 9.1E-13 2E-17 114.8 12.1 167 106-305 5-171 (352)
109 PRK15034 nitrate/nitrite trans 99.4 2.7E-12 5.8E-17 113.9 14.9 193 101-309 35-234 (462)
110 TIGR00898 2A0119 cation transp 99.4 4.6E-13 9.9E-18 122.9 10.4 158 121-311 110-267 (505)
111 TIGR00792 gph sugar (Glycoside 99.4 1.2E-12 2.5E-17 118.0 12.4 112 152-270 262-380 (437)
112 PRK11646 multidrug resistance 99.4 1.5E-12 3.4E-17 115.6 12.9 169 108-310 18-188 (400)
113 COG2223 NarK Nitrate/nitrite t 99.4 3.9E-12 8.4E-17 108.4 14.5 178 102-305 220-398 (417)
114 PRK09705 cynX putative cyanate 99.4 2.1E-12 4.5E-17 114.6 13.5 156 114-302 23-178 (393)
115 PRK09584 tppB putative tripept 99.4 3.6E-12 7.8E-17 116.2 15.2 168 102-301 23-194 (500)
116 PRK10489 enterobactin exporter 99.4 6.5E-13 1.4E-17 118.9 9.4 170 114-311 31-200 (417)
117 TIGR00885 fucP L-fucose:H+ sym 99.4 3E-12 6.5E-17 114.0 13.1 190 103-309 6-210 (410)
118 PRK11195 lysophospholipid tran 99.4 1.9E-12 4.1E-17 114.8 11.4 154 121-311 24-177 (393)
119 COG2223 NarK Nitrate/nitrite t 99.4 5E-12 1.1E-16 107.7 13.3 173 101-305 15-190 (417)
120 PRK11010 ampG muropeptide tran 99.4 3.2E-12 6.9E-17 116.5 13.1 179 101-311 13-198 (491)
121 TIGR00901 2A0125 AmpG-related 99.4 2.2E-12 4.9E-17 112.9 11.5 138 106-254 215-355 (356)
122 TIGR00897 2A0118 polyol permea 99.4 3.9E-12 8.5E-17 113.3 13.1 148 105-268 18-166 (402)
123 PRK15402 multidrug efflux syst 99.4 1.5E-11 3.2E-16 109.7 16.4 137 116-268 231-368 (406)
124 PRK11128 putative 3-phenylprop 99.4 1.8E-11 3.8E-16 108.3 16.5 154 114-302 219-373 (382)
125 TIGR00900 2A0121 H+ Antiporter 99.4 7.2E-12 1.6E-16 109.9 13.5 130 121-269 232-362 (365)
126 PRK10091 MFS transport protein 99.4 1.3E-11 2.8E-16 109.2 15.0 152 121-305 220-373 (382)
127 TIGR00899 2A0120 sugar efflux 99.4 4.7E-12 1E-16 111.6 12.0 171 109-312 6-181 (375)
128 PRK10504 putative transporter; 99.4 1.4E-11 3E-16 112.1 15.4 140 114-270 275-415 (471)
129 TIGR00880 2_A_01_02 Multidrug 99.4 2.8E-12 6.2E-17 96.2 9.1 134 156-310 7-141 (141)
130 TIGR00882 2A0105 oligosacchari 99.4 1E-11 2.2E-16 110.4 13.9 131 152-303 259-390 (396)
131 KOG0255 Synaptic vesicle trans 99.4 8.3E-12 1.8E-16 115.0 13.7 141 148-312 119-259 (521)
132 TIGR00805 oat sodium-independe 99.4 8.7E-12 1.9E-16 116.4 13.2 190 109-310 42-283 (633)
133 COG2270 Permeases of the major 99.4 3.2E-11 7E-16 102.9 15.3 177 105-313 257-434 (438)
134 PRK15034 nitrate/nitrite trans 99.4 3.7E-11 8.1E-16 106.7 15.9 176 103-305 255-451 (462)
135 TIGR00711 efflux_EmrB drug res 99.3 3.8E-11 8.3E-16 109.7 16.4 148 106-269 261-409 (485)
136 PRK03633 putative MFS family t 99.3 2.1E-11 4.6E-16 107.8 14.0 147 102-268 8-154 (381)
137 TIGR00710 efflux_Bcr_CflA drug 99.3 1E-10 2.2E-15 103.5 18.1 139 113-267 219-358 (385)
138 TIGR00806 rfc RFC reduced fola 99.3 1.8E-11 3.9E-16 107.2 12.8 157 118-309 44-204 (511)
139 PRK11043 putative transporter; 99.3 5.9E-11 1.3E-15 105.7 16.6 138 115-268 218-355 (401)
140 PRK14995 methyl viologen resis 99.3 4.5E-11 9.7E-16 109.3 15.4 147 106-269 265-412 (495)
141 PRK10133 L-fucose transporter; 99.3 4.2E-11 9.1E-16 107.6 14.7 151 101-268 27-177 (438)
142 KOG0252 Inorganic phosphate tr 99.3 2.2E-11 4.8E-16 104.5 12.0 212 97-314 38-252 (538)
143 PRK03633 putative MFS family t 99.3 3.9E-11 8.4E-16 106.1 14.1 152 118-305 218-369 (381)
144 TIGR00883 2A0106 metabolite-pr 99.3 4.8E-11 1E-15 105.7 14.5 155 152-311 40-194 (394)
145 PRK10213 nepI ribonucleoside t 99.3 1.8E-10 3.8E-15 102.3 18.0 153 115-301 231-384 (394)
146 PRK11902 ampG muropeptide tran 99.3 3.5E-11 7.6E-16 107.2 13.6 176 106-312 5-186 (402)
147 PRK08633 2-acyl-glycerophospho 99.3 3.3E-11 7.1E-16 121.4 14.8 132 117-268 249-382 (1146)
148 TIGR00896 CynX cyanate transpo 99.3 5.1E-11 1.1E-15 104.3 13.7 140 109-269 206-347 (355)
149 TIGR01272 gluP glucose/galacto 99.3 1.3E-10 2.9E-15 99.4 15.9 155 106-296 146-303 (310)
150 KOG2532 Permease of the major 99.3 2.3E-11 5.1E-16 108.6 11.5 139 149-305 75-213 (466)
151 KOG2615 Permease of the major 99.3 4.4E-12 9.5E-17 106.3 6.0 113 148-269 69-181 (451)
152 PTZ00207 hypothetical protein; 99.3 6.3E-11 1.4E-15 108.2 13.9 165 111-305 38-202 (591)
153 KOG0569 Permease of the major 99.3 4.3E-11 9.4E-16 106.0 11.5 147 149-312 62-209 (485)
154 PF06609 TRI12: Fungal trichot 99.3 1E-10 2.2E-15 106.3 13.8 158 113-305 57-214 (599)
155 PRK11102 bicyclomycin/multidru 99.3 2.7E-10 5.9E-15 100.6 16.4 133 115-264 209-343 (377)
156 PRK10473 multidrug efflux syst 99.3 1.4E-10 3E-15 103.0 14.5 105 151-268 243-347 (392)
157 PF07690 MFS_1: Major Facilita 99.3 2.7E-11 5.8E-16 105.7 9.4 133 112-261 218-352 (352)
158 TIGR00901 2A0125 AmpG-related 99.3 4.3E-11 9.3E-16 104.8 10.7 169 119-311 7-182 (356)
159 PRK06814 acylglycerophosphoeth 99.2 1.3E-10 2.8E-15 116.9 15.3 145 149-311 54-198 (1140)
160 KOG2504 Monocarboxylate transp 99.2 2.3E-11 4.9E-16 110.0 8.9 176 101-308 299-476 (509)
161 PRK10133 L-fucose transporter; 99.2 1.2E-10 2.5E-15 104.8 13.4 152 114-301 272-426 (438)
162 TIGR01301 GPH_sucrose GPH fami 99.2 1.7E-10 3.8E-15 103.2 14.2 199 102-312 6-223 (477)
163 PRK06814 acylglycerophosphoeth 99.2 1.4E-10 3E-15 116.7 14.4 164 111-299 236-413 (1140)
164 PRK11195 lysophospholipid tran 99.2 4.2E-10 9E-15 99.9 15.4 134 149-305 243-377 (393)
165 PF03825 Nuc_H_symport: Nucleo 99.2 6.7E-10 1.4E-14 98.0 16.3 171 115-310 222-398 (400)
166 PRK09528 lacY galactoside perm 99.2 1.7E-10 3.8E-15 103.4 12.8 170 106-306 16-189 (420)
167 KOG0254 Predicted transporter 99.2 4.8E-10 1E-14 103.0 15.9 142 150-312 92-234 (513)
168 TIGR00886 2A0108 nitrite extru 99.2 1.3E-10 2.7E-15 102.2 11.5 131 109-256 234-365 (366)
169 PF05977 MFS_3: Transmembrane 99.2 2.3E-10 5E-15 104.0 13.3 154 119-305 237-391 (524)
170 PRK10054 putative transporter; 99.2 2.5E-10 5.4E-15 101.4 12.6 133 152-305 249-381 (395)
171 TIGR00885 fucP L-fucose:H+ sym 99.2 5.4E-10 1.2E-14 99.6 14.7 134 115-269 247-380 (410)
172 PRK15011 sugar efflux transpor 99.2 2.9E-10 6.2E-15 101.0 13.0 171 109-312 24-199 (393)
173 TIGR00896 CynX cyanate transpo 99.2 1.8E-10 4E-15 100.8 11.4 152 116-300 16-167 (355)
174 PRK08633 2-acyl-glycerophospho 99.2 6.4E-10 1.4E-14 112.2 15.9 115 150-269 50-164 (1146)
175 PRK11128 putative 3-phenylprop 99.2 4.3E-10 9.3E-15 99.5 12.7 168 109-310 13-181 (382)
176 TIGR00882 2A0105 oligosacchari 99.1 3.6E-10 7.7E-15 100.5 11.4 179 103-309 5-185 (396)
177 PRK10429 melibiose:sodium symp 99.1 6.8E-10 1.5E-14 101.0 13.2 116 152-270 271-393 (473)
178 KOG3764 Vesicular amine transp 99.1 3.3E-11 7.2E-16 101.7 3.9 142 149-311 108-251 (464)
179 COG2807 CynX Cyanate permease 99.1 1.8E-09 4E-14 90.4 13.7 170 103-305 211-382 (395)
180 PRK11646 multidrug resistance 99.1 8.4E-10 1.8E-14 98.2 12.6 131 119-269 227-358 (400)
181 KOG2533 Permease of the major 99.1 2.3E-09 5E-14 96.2 15.1 146 152-312 86-232 (495)
182 TIGR01301 GPH_sucrose GPH fami 99.1 4E-09 8.7E-14 94.5 16.5 199 101-312 259-476 (477)
183 TIGR00788 fbt folate/biopterin 99.1 5.9E-10 1.3E-14 100.9 10.9 130 129-271 282-414 (468)
184 PF13347 MFS_2: MFS/sugar tran 99.1 4.3E-09 9.3E-14 94.6 16.3 113 152-270 265-384 (428)
185 PF05977 MFS_3: Transmembrane 99.1 6.3E-10 1.4E-14 101.2 10.9 139 151-305 49-187 (524)
186 TIGR00902 2A0127 phenyl propri 99.1 1.1E-09 2.3E-14 97.0 12.2 157 107-297 11-168 (382)
187 PF00083 Sugar_tr: Sugar (and 99.1 3.3E-12 7.2E-17 115.5 -4.3 148 149-311 48-195 (451)
188 PF06609 TRI12: Fungal trichot 99.1 1.1E-08 2.4E-13 93.3 18.0 196 102-312 312-558 (599)
189 PRK09848 glucuronide transport 99.1 1E-09 2.2E-14 99.2 11.1 113 152-270 269-388 (448)
190 PRK11652 emrD multidrug resist 99.1 8.2E-09 1.8E-13 91.8 16.0 111 152-268 248-358 (394)
191 PF01306 LacY_symp: LacY proto 99.0 4.7E-09 1E-13 91.4 13.6 141 149-310 261-403 (412)
192 COG3104 PTR2 Dipeptide/tripept 99.0 9.3E-10 2E-14 96.2 8.7 176 101-307 22-205 (498)
193 COG2211 MelB Na+/melibiose sym 99.0 3.4E-08 7.4E-13 87.1 18.1 115 149-269 274-395 (467)
194 PRK15403 multidrug efflux syst 99.0 9.8E-09 2.1E-13 91.8 14.4 144 109-268 227-371 (413)
195 PRK11462 putative transporter; 99.0 6.6E-09 1.4E-13 94.0 13.3 113 152-270 268-387 (460)
196 KOG0253 Synaptic vesicle trans 99.0 1.2E-08 2.6E-13 85.7 13.3 141 149-312 115-255 (528)
197 PF06813 Nodulin-like: Nodulin 99.0 4.9E-09 1.1E-13 85.5 10.7 144 110-268 12-155 (250)
198 PRK09669 putative symporter Ya 99.0 6.8E-09 1.5E-13 93.8 12.8 113 152-270 269-388 (444)
199 KOG1330 Sugar transporter/spin 99.0 7.1E-09 1.5E-13 89.7 12.0 123 149-271 285-413 (493)
200 TIGR02718 sider_RhtX_FptX side 99.0 5.3E-09 1.2E-13 92.8 10.7 179 102-308 3-184 (390)
201 KOG4686 Predicted sugar transp 99.0 9E-09 1.9E-13 83.4 10.8 145 103-269 267-413 (459)
202 KOG2504 Monocarboxylate transp 99.0 4.4E-09 9.5E-14 95.3 10.1 174 102-308 48-222 (509)
203 TIGR00792 gph sugar (Glycoside 98.9 7.7E-09 1.7E-13 93.2 10.8 176 116-311 15-198 (437)
204 COG0738 FucP Fucose permease [ 98.9 3.1E-08 6.6E-13 84.5 12.9 194 102-312 15-216 (422)
205 COG0738 FucP Fucose permease [ 98.8 1.3E-07 2.9E-12 80.6 12.0 158 108-301 244-402 (422)
206 KOG2325 Predicted transporter/ 98.7 9.7E-08 2.1E-12 84.5 10.5 200 98-312 32-234 (488)
207 PRK09669 putative symporter Ya 98.7 7.8E-08 1.7E-12 86.9 10.2 177 113-310 22-207 (444)
208 TIGR00889 2A0110 nucleoside tr 98.6 5.8E-07 1.2E-11 80.5 12.9 65 119-195 21-87 (418)
209 TIGR00805 oat sodium-independe 98.6 8.4E-07 1.8E-11 83.3 14.3 80 102-193 332-415 (633)
210 KOG2816 Predicted transporter 98.6 1.1E-06 2.3E-11 78.7 13.9 137 156-316 71-208 (463)
211 TIGR00788 fbt folate/biopterin 98.6 2.3E-07 4.9E-12 84.2 9.7 174 103-311 29-212 (468)
212 PF13347 MFS_2: MFS/sugar tran 98.6 1.6E-07 3.5E-12 84.5 7.5 175 115-309 16-200 (428)
213 PRK10207 dipeptide/tripeptide 98.6 1.6E-06 3.4E-11 79.1 13.9 113 155-267 317-438 (489)
214 PRK10429 melibiose:sodium symp 98.6 4.7E-07 1E-11 82.5 10.2 181 110-310 16-204 (473)
215 TIGR00926 2A1704 Peptide:H+ sy 98.5 2.2E-06 4.8E-11 80.1 14.0 173 115-305 2-179 (654)
216 TIGR00924 yjdL_sub1_fam amino 98.5 1.1E-05 2.4E-10 73.5 17.9 111 181-304 353-464 (475)
217 KOG2563 Permease of the major 98.5 1.3E-06 2.9E-11 75.7 10.9 183 103-311 269-453 (480)
218 KOG3762 Predicted transporter 98.5 6.5E-07 1.4E-11 79.1 8.4 155 118-305 389-544 (618)
219 KOG2563 Permease of the major 98.5 2.7E-06 6E-11 73.8 12.0 122 148-269 80-201 (480)
220 PF01306 LacY_symp: LacY proto 98.4 2.9E-07 6.2E-12 80.4 5.6 168 106-305 13-185 (412)
221 PTZ00207 hypothetical protein; 98.4 1.2E-05 2.7E-10 74.0 16.3 191 102-312 355-557 (591)
222 KOG3626 Organic anion transpor 98.4 2.3E-05 5E-10 72.8 16.6 80 101-191 393-475 (735)
223 PF03825 Nuc_H_symport: Nucleo 98.4 3.4E-06 7.3E-11 74.7 10.8 173 108-311 10-183 (400)
224 PRK11462 putative transporter; 98.4 4.2E-06 9.1E-11 75.9 11.7 177 113-310 22-207 (460)
225 PF05631 DUF791: Protein of un 98.4 1.3E-05 2.7E-10 68.1 13.5 161 121-313 55-222 (354)
226 PRK09584 tppB putative tripept 98.3 1.4E-05 3E-10 73.4 14.3 135 166-303 339-474 (500)
227 COG2807 CynX Cyanate permease 98.3 1.2E-05 2.6E-10 68.0 12.5 158 114-305 26-183 (395)
228 KOG2615 Permease of the major 98.2 1.6E-05 3.6E-10 67.6 10.4 44 226-269 370-413 (451)
229 KOG3764 Vesicular amine transp 98.1 1.6E-05 3.5E-10 68.0 9.4 136 152-305 311-451 (464)
230 COG2211 MelB Na+/melibiose sym 98.1 3.1E-05 6.8E-10 68.7 10.9 180 112-311 24-211 (467)
231 PRK09848 glucuronide transport 98.1 3.5E-05 7.5E-10 69.8 10.9 67 113-191 21-93 (448)
232 PF12832 MFS_1_like: MFS_1 lik 98.0 2.4E-05 5.3E-10 51.4 6.3 66 108-185 8-73 (77)
233 PF05978 UNC-93: Ion channel r 97.9 0.00025 5.4E-09 53.6 11.4 142 112-268 8-149 (156)
234 PF11700 ATG22: Vacuole efflux 97.9 0.00043 9.4E-09 62.8 14.1 151 151-312 74-252 (477)
235 PF03137 OATP: Organic Anion T 97.9 2.7E-06 5.9E-11 78.0 0.0 157 102-269 307-513 (539)
236 PF03092 BT1: BT1 family; Int 97.9 3.8E-05 8.3E-10 69.0 7.0 156 152-313 260-418 (433)
237 PF03209 PUCC: PUCC protein; 97.8 0.00064 1.4E-08 59.0 12.3 155 130-304 239-394 (403)
238 PF03092 BT1: BT1 family; Int 97.7 0.00011 2.3E-09 66.1 7.8 129 163-309 40-177 (433)
239 PF03209 PUCC: PUCC protein; 97.7 0.00014 3E-09 63.0 7.5 107 162-268 29-149 (403)
240 PF03137 OATP: Organic Anion T 97.6 9.9E-06 2.2E-10 74.4 -0.6 178 120-309 23-251 (539)
241 PF06963 FPN1: Ferroportin1 (F 97.6 0.0021 4.6E-08 57.2 13.4 139 114-265 272-413 (432)
242 KOG2816 Predicted transporter 97.6 0.00083 1.8E-08 60.5 10.8 105 157-270 287-392 (463)
243 COG0477 ProP Permeases of the 97.4 0.003 6.5E-08 53.4 12.1 130 151-297 43-174 (338)
244 KOG3626 Organic anion transpor 97.4 0.0038 8.2E-08 58.6 12.7 200 103-314 100-349 (735)
245 PF06779 DUF1228: Protein of u 97.2 0.0017 3.7E-08 43.2 6.4 74 113-198 5-78 (85)
246 PRK15462 dipeptide/tripeptide 97.2 0.013 2.8E-07 53.4 14.1 116 152-267 313-437 (493)
247 PF07672 MFS_Mycoplasma: Mycop 97.1 0.014 3.1E-07 47.6 12.0 104 152-255 146-253 (267)
248 TIGR00769 AAA ADP/ATP carrier 97.1 0.011 2.3E-07 53.4 12.5 106 163-268 60-189 (472)
249 PF01770 Folate_carrier: Reduc 97.1 0.016 3.6E-07 50.9 13.0 126 165-310 59-184 (412)
250 KOG3098 Uncharacterized conser 96.9 0.043 9.3E-07 49.2 14.2 109 152-269 55-163 (461)
251 PF02487 CLN3: CLN3 protein; 96.9 0.0083 1.8E-07 52.7 9.3 61 208-268 335-395 (402)
252 PF00854 PTR2: POT family; In 96.8 0.0046 1E-07 54.6 7.4 115 178-305 2-120 (372)
253 TIGR01272 gluP glucose/galacto 96.7 0.0021 4.5E-08 55.2 4.3 101 211-311 13-118 (310)
254 KOG3098 Uncharacterized conser 96.6 0.019 4.2E-07 51.3 9.7 118 149-267 281-411 (461)
255 PF01770 Folate_carrier: Reduc 96.5 0.035 7.7E-07 48.9 10.8 71 102-181 249-319 (412)
256 TIGR00939 2a57 Equilibrative N 96.5 0.048 1E-06 49.1 11.9 53 215-267 379-431 (437)
257 KOG0637 Sucrose transporter an 96.4 0.0056 1.2E-07 53.9 4.9 155 101-267 33-202 (498)
258 COG2270 Permeases of the major 96.3 0.058 1.3E-06 47.3 10.5 155 152-311 63-224 (438)
259 KOG3574 Acetyl-CoA transporter 96.2 0.032 7E-07 48.2 8.4 84 101-199 32-121 (510)
260 KOG4686 Predicted sugar transp 96.2 0.0028 6E-08 52.3 2.1 113 152-269 84-197 (459)
261 KOG2325 Predicted transporter/ 96.1 0.0059 1.3E-07 54.8 3.6 61 229-302 409-469 (488)
262 KOG1237 H+/oligopeptide sympor 96.1 0.33 7.1E-06 45.3 14.9 178 101-303 38-240 (571)
263 PF06963 FPN1: Ferroportin1 (F 95.9 0.3 6.5E-06 43.8 13.7 141 152-305 43-197 (432)
264 COG3104 PTR2 Dipeptide/tripept 95.8 0.07 1.5E-06 47.8 8.8 114 152-265 329-451 (498)
265 KOG3762 Predicted transporter 95.6 0.0046 9.9E-08 55.5 1.1 69 109-189 20-88 (618)
266 PRK03612 spermidine synthase; 95.2 0.64 1.4E-05 43.0 13.5 26 243-268 144-169 (521)
267 PF02487 CLN3: CLN3 protein; 95.2 0.11 2.5E-06 45.7 8.1 130 154-308 66-196 (402)
268 TIGR00806 rfc RFC reduced fola 95.1 0.092 2E-06 47.3 7.3 60 106-176 268-327 (511)
269 PF01733 Nucleoside_tran: Nucl 95.0 0.0043 9.4E-08 53.2 -1.0 51 215-265 255-305 (309)
270 PF13000 Acatn: Acetyl-coenzym 94.9 0.35 7.5E-06 43.6 10.4 33 165-197 53-91 (544)
271 PF03219 TLC: TLC ATP/ADP tran 94.7 0.23 5.1E-06 45.3 9.1 109 161-269 73-205 (491)
272 PF13000 Acatn: Acetyl-coenzym 94.1 0.39 8.4E-06 43.3 8.7 44 228-271 425-468 (544)
273 KOG1479 Nucleoside transporter 93.3 0.72 1.6E-05 40.6 8.9 54 210-263 345-398 (406)
274 COG3202 ATP/ADP translocase [E 92.9 3.4 7.3E-05 37.4 12.6 110 160-269 75-209 (509)
275 KOG1479 Nucleoside transporter 90.1 13 0.00028 33.0 13.6 57 108-173 26-82 (406)
276 PF11947 DUF3464: Protein of u 89.6 1.6 3.4E-05 32.7 6.2 88 168-259 55-145 (153)
277 KOG4332 Predicted sugar transp 87.5 0.31 6.6E-06 40.3 1.4 31 153-183 78-108 (454)
278 KOG4332 Predicted sugar transp 86.0 16 0.00034 30.7 10.3 97 152-249 287-385 (454)
279 KOG3097 Predicted membrane pro 85.6 23 0.00049 30.7 11.3 28 158-185 69-96 (390)
280 COG5336 Uncharacterized protei 85.2 2.1 4.4E-05 29.6 4.2 31 161-191 56-87 (116)
281 KOG3574 Acetyl-CoA transporter 83.5 1.8 4E-05 37.8 4.3 42 228-269 389-430 (510)
282 TIGR00939 2a57 Equilibrative N 83.1 15 0.00033 33.3 10.2 25 216-241 114-138 (437)
283 KOG3810 Micronutrient transpor 81.6 12 0.00027 32.5 8.3 66 106-181 240-305 (433)
284 KOG3880 Predicted small molecu 77.9 6.3 0.00014 33.6 5.4 61 207-267 341-401 (409)
285 PRK10263 DNA translocase FtsK; 75.4 28 0.00061 35.9 9.9 19 157-175 62-80 (1355)
286 COG4262 Predicted spermidine s 74.9 56 0.0012 28.7 10.2 22 247-268 142-163 (508)
287 cd02432 Nodulin-21_like_1 Nodu 74.8 41 0.00089 27.2 9.2 19 162-180 176-194 (218)
288 PF03219 TLC: TLC ATP/ADP tran 74.6 51 0.0011 30.5 10.9 32 156-187 328-359 (491)
289 KOG0637 Sucrose transporter an 70.8 5.4 0.00012 35.9 3.6 79 104-182 283-367 (498)
290 KOG2601 Iron transporter [Inor 64.0 36 0.00077 30.2 7.0 38 157-194 73-110 (503)
291 PF02990 EMP70: Endomembrane p 60.1 1.4E+02 0.003 28.0 10.8 24 153-176 303-326 (521)
292 KOG3810 Micronutrient transpor 58.2 13 0.00028 32.4 3.4 124 168-311 63-186 (433)
293 TIGR02230 ATPase_gene1 F0F1-AT 56.4 65 0.0014 22.3 6.1 27 163-189 59-85 (100)
294 PF01988 VIT1: VIT family; In 53.7 1.2E+02 0.0025 24.5 11.6 14 166-179 176-189 (213)
295 TIGR00769 AAA ADP/ATP carrier 53.6 1.8E+02 0.004 26.8 16.9 37 153-189 309-345 (472)
296 PF08006 DUF1700: Protein of u 52.5 1.1E+02 0.0024 23.8 8.7 6 55-60 44-49 (181)
297 COG3202 ATP/ADP translocase [E 51.5 2E+02 0.0044 26.6 12.3 29 160-188 335-363 (509)
298 COG1288 Predicted membrane pro 50.8 1.9E+02 0.0042 26.2 10.3 27 1-27 218-246 (481)
299 TIGR00880 2_A_01_02 Multidrug 49.5 90 0.0019 22.0 8.5 34 151-184 91-124 (141)
300 PF05297 Herpes_LMP1: Herpesvi 49.2 5.6 0.00012 32.9 0.0 14 170-183 68-81 (381)
301 cd02434 Nodulin-21_like_3 Nodu 49.0 1.5E+02 0.0031 24.2 9.3 18 163-180 183-200 (225)
302 PF06027 DUF914: Eukaryotic pr 48.0 1.2E+02 0.0025 26.5 7.7 17 293-309 291-307 (334)
303 PF01405 PsbT: Photosystem II 47.1 34 0.00074 17.4 2.6 15 13-27 14-28 (29)
304 PF12273 RCR: Chitin synthesis 44.8 14 0.00031 27.0 1.5 19 2-20 1-19 (130)
305 PF04024 PspC: PspC domain; I 42.2 26 0.00056 21.7 2.1 26 2-27 32-61 (61)
306 PF03547 Mem_trans: Membrane t 42.1 37 0.00081 30.0 4.1 29 238-267 90-118 (385)
307 KOG2881 Predicted membrane pro 41.3 1.1E+02 0.0024 25.4 6.0 27 157-183 250-276 (294)
308 PRK10697 DNA-binding transcrip 40.6 72 0.0016 22.9 4.4 14 15-28 56-69 (118)
309 PF04281 Tom22: Mitochondrial 40.6 82 0.0018 23.3 4.8 22 233-254 60-81 (137)
310 PF15061 DUF4538: Domain of un 40.5 38 0.00083 20.6 2.6 20 1-20 5-24 (58)
311 PF09605 Trep_Strep: Hypotheti 39.5 1.1E+02 0.0024 24.0 5.9 28 151-178 156-183 (186)
312 PRK11875 psbT photosystem II r 39.4 47 0.001 17.2 2.4 14 15-28 16-29 (31)
313 PF10183 ESSS: ESSS subunit of 38.6 34 0.00073 24.0 2.6 35 282-316 55-90 (105)
314 PF08566 Pam17: Mitochondrial 37.7 1.4E+02 0.0031 23.0 5.9 16 83-98 24-39 (173)
315 PF10183 ESSS: ESSS subunit of 37.4 46 0.001 23.3 3.1 26 1-26 59-85 (105)
316 CHL00031 psbT photosystem II p 36.9 50 0.0011 17.4 2.3 14 15-28 16-29 (33)
317 TIGR00986 3a0801s05tom22 mitoc 36.4 85 0.0018 23.3 4.3 20 233-252 58-77 (145)
318 PF08570 DUF1761: Protein of u 36.3 1.6E+02 0.0036 21.2 9.4 67 101-175 3-69 (126)
319 COG5336 Uncharacterized protei 36.2 1.5E+02 0.0033 20.8 6.1 34 238-271 36-69 (116)
320 PF09605 Trep_Strep: Hypotheti 35.5 2.2E+02 0.0047 22.4 10.9 43 153-195 34-76 (186)
321 PF06912 DUF1275: Protein of u 34.6 2.4E+02 0.0051 22.5 10.0 43 154-196 53-98 (209)
322 PF04341 DUF485: Protein of un 33.2 1.5E+02 0.0034 20.0 6.3 30 100-129 16-45 (91)
323 cd02433 Nodulin-21_like_2 Nodu 31.2 3E+02 0.0064 22.6 10.7 16 165-180 194-209 (234)
324 COG2274 SunT ABC-type bacterio 29.6 5.6E+02 0.012 25.3 10.1 24 151-174 161-184 (709)
325 PF12670 DUF3792: Protein of u 29.5 2.1E+02 0.0046 20.3 9.6 32 155-186 42-73 (116)
326 PF02659 DUF204: Domain of unk 28.4 1.5E+02 0.0033 18.4 5.2 31 150-180 27-57 (67)
327 PF03606 DcuC: C4-dicarboxylat 27.9 2.3E+02 0.0049 26.1 6.7 14 168-181 105-118 (465)
328 COG2966 Uncharacterized conser 26.9 3.7E+02 0.0081 22.3 9.7 25 156-181 153-177 (250)
329 PF06796 NapE: Periplasmic nit 26.9 1.6E+02 0.0034 18.0 5.2 17 110-126 33-49 (56)
330 PRK11469 hypothetical protein; 26.8 3E+02 0.0065 21.7 6.4 39 152-190 140-178 (188)
331 PF06027 DUF914: Eukaryotic pr 26.7 4.4E+02 0.0094 23.1 8.1 27 169-197 126-152 (334)
332 PF11511 RhodobacterPufX: Intr 25.7 82 0.0018 19.8 2.4 31 284-314 28-59 (67)
333 PRK02237 hypothetical protein; 25.6 1E+02 0.0022 21.6 3.1 43 152-194 61-103 (109)
334 PF07698 7TM-7TMR_HD: 7TM rece 25.4 3.3E+02 0.0071 21.2 7.2 37 157-193 107-143 (194)
335 PF14715 FixP_N: N-terminal do 25.3 70 0.0015 19.0 2.0 23 1-23 24-46 (51)
336 KOG3880 Predicted small molecu 25.1 69 0.0015 27.7 2.6 119 158-302 73-193 (409)
337 PF13334 DUF4094: Domain of un 24.9 93 0.002 21.3 2.8 27 1-27 2-31 (95)
338 COG2119 Predicted membrane pro 24.7 2.1E+02 0.0047 22.4 5.0 32 153-184 140-171 (190)
339 KOG4830 Predicted sugar transp 24.4 96 0.0021 26.1 3.3 46 122-179 39-93 (412)
340 COG3462 Predicted membrane pro 24.3 1.2E+02 0.0025 21.3 3.1 12 37-48 88-99 (117)
341 PF04226 Transgly_assoc: Trans 23.9 1.6E+02 0.0035 17.1 4.4 18 159-176 3-20 (48)
342 PF02694 UPF0060: Uncharacteri 23.6 96 0.0021 21.7 2.7 43 152-194 59-101 (107)
343 PF06738 DUF1212: Protein of u 22.8 3.7E+02 0.0081 20.9 9.7 15 52-66 82-96 (193)
344 PF11283 DUF3084: Protein of u 22.7 1.3E+02 0.0027 19.8 2.9 16 167-182 20-35 (79)
345 PRK11588 hypothetical protein; 22.1 3.1E+02 0.0068 25.5 6.4 15 168-182 137-151 (506)
346 PF13493 DUF4118: Domain of un 21.3 79 0.0017 21.7 2.1 22 156-177 84-105 (105)
347 PF08611 DUF1774: Fungal prote 21.2 2.6E+02 0.0056 19.3 4.3 46 245-305 26-71 (97)
348 PF06123 CreD: Inner membrane 20.4 3.6E+02 0.0078 24.6 6.3 32 166-197 310-346 (430)
349 KOG1292 Xanthine/uracil transp 20.2 6.9E+02 0.015 23.2 7.8 21 172-192 343-363 (510)
350 COG0201 SecY Preprotein transl 20.1 6.1E+02 0.013 23.2 7.7 19 230-250 168-186 (436)
351 PF13536 EmrE: Multidrug resis 20.1 3.1E+02 0.0068 19.1 7.2 12 172-183 84-95 (113)
No 1
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.6e-33 Score=243.65 Aligned_cols=287 Identities=21% Similarity=0.281 Sum_probs=223.0
Q ss_pred CchhhhhhhHHHHHHHHHHHhccCCchhhhhhcCChhhHHHHHHHhhhhcCCCCchhHHHHHhhhhccccccCCCCCCCc
Q 036040 1 WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQVQAVDQRNDVVCGAADHDDD 80 (338)
Q Consensus 1 WR~~f~~~~i~~~i~~~~~~~lpEsp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (338)
|++.+.+.++|+++.++..+++|||||||...+++++||++.++++++.++ ++++.+++.++.+++ +..+
T Consensus 183 W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~-~~~~~e~~~~e~~~~---------~~~~ 252 (485)
T KOG0569|consen 183 WPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKED-VEAEIEEMLREIEEE---------ELEK 252 (485)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHh---------cccc
Confidence 899999999999999999999999999994446777778788877776552 223333333333331 1111
Q ss_pred ccccchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhcc
Q 036040 81 DKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGL 160 (338)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (338)
+++.+.+++++++..|+. ..+.+.+....+..+.+....|...++++.|+++.+ +...+....+..
T Consensus 253 ~~~~sl~~~~~~~~lR~~--~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~------------a~~an~~~g~v~ 318 (485)
T KOG0569|consen 253 KKQISLRQLLKNPTLRRP--LLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEE------------AQYANLGIGIVN 318 (485)
T ss_pred ccCCcHHHHhcCcchhHH--HHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHH
Confidence 356678899999888775 444455555566778888889999999999988865 555777788888
Q ss_pred chhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchh--hHHHHHHHHHHhhccCccceeeeeecccCC
Q 036040 161 IPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNST--GFVVMYALTFFFANFGPNSTTFIVPAEIFP 238 (338)
Q Consensus 161 ~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 238 (338)
++.++++.++.||+|||++++.+..++.++.+++.............. ..+...+.....+..|..|++|.+.+|++|
T Consensus 319 ~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~ 398 (485)
T KOG0569|consen 319 LLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFP 398 (485)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCC
Confidence 889999999999999999999999999988888776553221111111 223444555667788889999999999999
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCCCChhh
Q 036040 239 ARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNGRSLEE 317 (338)
Q Consensus 239 ~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~ 317 (338)
++.|+.++++....+++.+++..+.++.+. +..|- ..|+++.+.++++.++.+ ++||||+|+..|
T Consensus 399 ~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~-------------~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~e 464 (485)
T KOG0569|consen 399 QSARSAAQSVATAVNWLSNFIVGFAFPPLQ-------------NVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYE 464 (485)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHH
Confidence 999999999999999999999999999997 56665 678888888888888888 999999999999
Q ss_pred hhhhhhhh
Q 036040 318 ISGEIEEC 325 (338)
Q Consensus 318 ~~~~~~~~ 325 (338)
+.++.++.
T Consensus 465 I~~~~~~~ 472 (485)
T KOG0569|consen 465 IIEELEKR 472 (485)
T ss_pred HHHHHHhC
Confidence 88877655
No 2
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=100.00 E-value=3.1e-31 Score=241.92 Aligned_cols=298 Identities=49% Similarity=0.902 Sum_probs=194.3
Q ss_pred CchhhhhhhHHHHHHHHHHHhccCCchhhhhhcCCh-hhHHHHHHHhhhhcCCCCchhHHHHHhhhhccccccCCCCCCC
Q 036040 1 WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNA-GKASEDFSKLLVMNNNNSNNIIEQVQAVDQRNDVVCGAADHDD 79 (338)
Q Consensus 1 WR~~f~~~~i~~~i~~~~~~~lpEsp~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (338)
||++|.++++|+++.++.++++||||||| ..++++ +++.+.+.+..+.+..++ .+|.++.++ +++
T Consensus 203 WR~~~~~~~ip~~i~~~~~~~lpESpr~l-~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~----------~~~ 268 (502)
T TIGR00887 203 WRILIGFGAVPALLALYFRLTIPETPRYT-ADVAKDVEQAASDMSAVLQVKIEAE---PDEVEKAST----------AVE 268 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHH-HHhCcchHHHHHHHHHHhccccccC---cccccchhc----------ccc
Confidence 99999999999999888889999999997 444443 445655665554321111 111111111 000
Q ss_pred cccccchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhc
Q 036040 80 DDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCG 159 (338)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (338)
..+.+++++++++..++..+..+.....+++..+.+|+...+.|.++++.|+++...+...+............+..++
T Consensus 269 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (502)
T TIGR00887 269 -VPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAG 347 (502)
T ss_pred -chhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHH
Confidence 1123466777655445544455555566666777889999999999999998765422211111121222234455667
Q ss_pred cchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCc
Q 036040 160 LIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPA 239 (338)
Q Consensus 160 ~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 239 (338)
.+++.+++++++||+|||++++++..++++++.+++...... +.........+...+...+..+..+.+.+|++|+
T Consensus 348 ~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~ 423 (502)
T TIGR00887 348 TVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL----STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPT 423 (502)
T ss_pred HHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHHHHHhcCCCchhhhhhhccCch
Confidence 778889999999999999999888877777766665433110 1111122222222333455667788889999999
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCCCCChhhhh
Q 036040 240 RFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGRSLEEIS 319 (338)
Q Consensus 240 ~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 319 (338)
+.|+++.|+.+.+++++++++|.+.+.+.+...+ ..+++...++...|++++++++++.+..+++|||++++++|++
T Consensus 424 ~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~~~leei~ 500 (502)
T TIGR00887 424 RYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDP---TKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETKGKSLEELS 500 (502)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccc---cccccccccchHHHHHHHHHHHHHHHHheEeccCCCCCHHhhh
Confidence 9999999999999999999999999998741100 0000113456677888888888877766788999999988765
Q ss_pred h
Q 036040 320 G 320 (338)
Q Consensus 320 ~ 320 (338)
+
T Consensus 501 ~ 501 (502)
T TIGR00887 501 G 501 (502)
T ss_pred C
Confidence 4
No 3
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.3e-29 Score=214.19 Aligned_cols=291 Identities=56% Similarity=1.019 Sum_probs=233.4
Q ss_pred CchhhhhhhHHHHHHHHHHHhccCCchhhhhhcCChhhHHHHHHHhhhhcCCCCchhHHHHHhhhhccccccCCCCCCCc
Q 036040 1 WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQVQAVDQRNDVVCGAADHDDD 80 (338)
Q Consensus 1 WR~~f~~~~i~~~i~~~~~~~lpEsp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (338)
||..|.++.+|+++.++.++.+|||+||.++..++.+.+.+...+.... +++++ ++.+...
T Consensus 224 WRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~------~~~~~-------------~~~~~~~ 284 (538)
T KOG0252|consen 224 WRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSV------DIEAE-------------STAESDV 284 (538)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhcccccccc------ccchh-------------hccccCC
Confidence 9999999999999999999999999999877776655554322222111 11110 0111112
Q ss_pred ccccchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhcc
Q 036040 81 DKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGL 160 (338)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (338)
+.+.+...+|.....+++.+.++.....||..-+.+|+...+...++++.|+.+....+ +..+..+....++...+.
T Consensus 285 ~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~---~~~~~vA~~~~iia~~~~ 361 (538)
T KOG0252|consen 285 PPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTY---HELFKVAEGNLIIAVCST 361 (538)
T ss_pred CCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchH---HHHHHHHHHHHHHHHHcc
Confidence 23334445666666666778899999999999999999999999999999999877333 455566777888888999
Q ss_pred chhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCcc
Q 036040 161 IPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR 240 (338)
Q Consensus 161 ~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 240 (338)
++|..+..+++|++|||++.+.+.+++++..+.++..... ..+....+++..+..++..+|+......+.+|.||++
T Consensus 362 vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~---~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPar 438 (538)
T KOG0252|consen 362 VPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQ---LENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPAR 438 (538)
T ss_pred CCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccc---ccccCceeehHHHHHHHHhcCCCceeEEeehhhchHH
Confidence 9999999999999999999999999999998888877643 2255666777778888889999999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCCCCChhhhhh
Q 036040 241 FRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGRSLEEISG 320 (338)
Q Consensus 241 ~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 320 (338)
.|+++.|+..+.+-+|++++...+..+.+.. ++...+.+.++++++++++++.+..+++|||++++++|++.
T Consensus 439 vR~t~hGIsAA~GK~GAivg~~~F~~~t~~~--------yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~leei~~ 510 (538)
T KOG0252|consen 439 VRSTCHGISAASGKAGAIVGAFGFLYLTDHN--------YPPNIGVRNVFIILAGCMLLGILFTLLIPETKGKSLEEISN 510 (538)
T ss_pred HhhhhhhHHHHhccchHHHHHHHhhHhhhcc--------CCccccchHHHHHHHHHHHHhHheeEEeecccccCHHHhcC
Confidence 9999999999999999999999999997421 34578899999999999999999999999999999999866
Q ss_pred hhhh
Q 036040 321 EIEE 324 (338)
Q Consensus 321 ~~~~ 324 (338)
+.+.
T Consensus 511 e~~~ 514 (538)
T KOG0252|consen 511 EEES 514 (538)
T ss_pred hhhc
Confidence 5543
No 4
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=99.96 E-value=2.9e-27 Score=194.52 Aligned_cols=287 Identities=20% Similarity=0.315 Sum_probs=196.9
Q ss_pred CchhhhhhhHHHHHHHHHHHhccCCchhhhhhcCChhhHHHHHHHhhhhcCCCCchhHHHHHhhhhc---cccccCCCCC
Q 036040 1 WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQVQAVDQR---NDVVCGAADH 77 (338)
Q Consensus 1 WR~~f~~~~i~~~i~~~~~~~lpEsp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 77 (338)
|||..+..++|..+...+.+++||||||+ +.++++++|.+.++++.+.|+.+-+.-..+...++++ ..-.+..+..
T Consensus 229 wr~~l~~~~~pl~~~a~f~~w~~ESpRf~-~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~ 307 (528)
T KOG0253|consen 229 WRYLLFTSSTPLMFAARFLVWVYESPRFY-LAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSS 307 (528)
T ss_pred HHHHHHHHHhHHHHHHHHHhhcccCcchh-hhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhc
Confidence 89999998899989999999999999998 8889999999999999999986544322221111110 0000111111
Q ss_pred CCcccccchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHcc---C----CCCCCCCC-hhhhHHHHH
Q 036040 78 DDDDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVG---W----LPAAHTMG-ALDELFNFA 149 (338)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~----~~~~~~~~-~~~~~~~~~ 149 (338)
..++......+++..+..++ .+..+.+||.+.+.||+...+...+.+.-+ . .+.+.... ...-+....
T Consensus 308 a~ke~rg~~~nLlsp~lrkt----tlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~d 383 (528)
T KOG0253|consen 308 AAKEVRGGTTNLLSPKLRKT----TLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKD 383 (528)
T ss_pred cccccccchHhhcChHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhH
Confidence 11223344556665544443 477788889999999999888877766522 1 11111110 001111234
Q ss_pred HHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCcccee
Q 036040 150 RAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTT 229 (338)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (338)
+.-..+..+..++|.++.+++.||+|||+.+..++++++++.+++..... ........+..-. +..+.+.+.
T Consensus 384 YrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~-------rn~~tvllf~ara-fisg~fqva 455 (528)
T KOG0253|consen 384 YRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKT-------RNAYTVLLFTARA-FISGAFQVA 455 (528)
T ss_pred HHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcC-------cchhHHHHHHHHH-HHhchheEE
Confidence 45566778889999999999999999999999999988888887766552 2222222222222 333445678
Q ss_pred eeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecc-
Q 036040 230 FIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVP- 308 (338)
Q Consensus 230 ~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 308 (338)
|+|..|++|+..|+++.|.+...+++|+++.|++. +. ...+-..+..+++++++++.+...++|
T Consensus 456 YvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~-------------~e~s~sl~i~vy~~~~ilagIavcffPi 520 (528)
T KOG0253|consen 456 YVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MR-------------AELSTSLPIFVYGALFILAGIAVCFFPI 520 (528)
T ss_pred EEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HH-------------hccceeehHHHHHHHHHHHHHHheeeee
Confidence 99999999999999999999999999999999998 32 233444556678888888888888555
Q ss_pred cCCCCCh
Q 036040 309 EPNGRSL 315 (338)
Q Consensus 309 e~~~~~~ 315 (338)
||++|+.
T Consensus 521 EtkGR~l 527 (528)
T KOG0253|consen 521 ETKGRSL 527 (528)
T ss_pred ccCCCCC
Confidence 9999864
No 5
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.96 E-value=5.6e-28 Score=224.70 Aligned_cols=288 Identities=16% Similarity=0.263 Sum_probs=191.9
Q ss_pred CchhhhhhhHHHHHHHHHHHhccCCchhhhhhcCChhhHHHHHHHhhhhcCCCCc-h-hH---HHHHhhhhccccccCCC
Q 036040 1 WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSN-N-II---EQVQAVDQRNDVVCGAA 75 (338)
Q Consensus 1 WR~~f~~~~i~~~i~~~~~~~lpEsp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~---~~~~~~~~~~~~~~~~~ 75 (338)
||+++++.++++++.+++++++||||+|| ..+++.+++.+.++++.+.|.+... + .. ++++....+.+..+..+
T Consensus 333 WR~l~~i~~lp~ll~ll~~~~lPESPrwL-~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (742)
T TIGR01299 333 WRVFVIVCAFPCVFAIGALTFMPESPRFF-LENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIES 411 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHH-HHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccc
Confidence 89999999999998888889999999998 7778889999999998877654221 1 11 11111111000000000
Q ss_pred CCCC------ccc---c----cchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHc------------
Q 036040 76 DHDD------DDK---K----GISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAV------------ 130 (338)
Q Consensus 76 ~~~~------~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 130 (338)
+.+. ... . .+++++|+++. .+.++.++++|++..+.+|++..|+|.++++.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~----~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~ 487 (742)
T TIGR01299 412 DTGTWYQRCFVRALSEGGGIWGNFLRCFNPEV----REITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNF 487 (742)
T ss_pred cccchhhcchhhhhhhhhhHHHHHHHHcCccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 0000 000 0 02333444433 33568888889999999999999999987653
Q ss_pred ----------cCCCCC-------------CCC-----------------------------C------------------
Q 036040 131 ----------GWLPAA-------------HTM-----------------------------G------------------ 140 (338)
Q Consensus 131 ----------g~~~~~-------------~~~-----------------------------~------------------ 140 (338)
+++... .++ +
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~ 567 (742)
T TIGR01299 488 PGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFI 567 (742)
T ss_pred cccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhh
Confidence 000000 000 0
Q ss_pred --------------hhh-------hHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhh
Q 036040 141 --------------ALD-------ELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYH 199 (338)
Q Consensus 141 --------------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~ 199 (338)
.+. ...........+..++.++|.+++|+++||+|||++++++.++.+++++++++...
T Consensus 568 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s 647 (742)
T TIGR01299 568 DSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNS 647 (742)
T ss_pred hhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 000 00012344566677888999999999999999999999998888888777665431
Q ss_pred hcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 036040 200 HWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPG 279 (338)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 279 (338)
... ++++.++.+++..+..+..+++++|++|++.|++++|+.++.+++|++++|.+.+.+..
T Consensus 648 -------~~~-ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~---------- 709 (742)
T TIGR01299 648 -------ESA-MIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVG---------- 709 (742)
T ss_pred -------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 122 22223333444445566788899999999999999999999999999999999998762
Q ss_pred CCCCcchHHHHHHHHHHHHHhHhheeecccCCCCCh
Q 036040 280 YPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGRSL 315 (338)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 315 (338)
.+...+|++.+++.+++.++.+++|||+++.+
T Consensus 710 ----~~~~~pf~i~a~~lll~~ll~~~LPET~~~~l 741 (742)
T TIGR01299 710 ----ITKAAPILFASAALACGGLLALKLPDTRGQVL 741 (742)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHHhCCCCccccc
Confidence 24567788888887777777778899988753
No 6
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=99.93 E-value=1.4e-24 Score=198.34 Aligned_cols=287 Identities=21% Similarity=0.305 Sum_probs=202.9
Q ss_pred CchhhhhhhHHHHHHHHHHHhccCCchhhhhhcCChhhHHHHHHHhhhhcCCCCchhHHHHHhhhhccccccCCCCCCCc
Q 036040 1 WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQVQAVDQRNDVVCGAADHDDD 80 (338)
Q Consensus 1 WR~~f~~~~i~~~i~~~~~~~lpEsp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (338)
||+++.+..+|+++..+..+++||||||| .++++.+++++.+.+.++.+ +++.+++.++++.+. ..+... .
T Consensus 208 Wr~~~~~~~i~~~~~~~~~~~~pesp~~L-~~~g~~~~a~~~l~~l~g~~---~~~~~~~~~~~~~~~--~~~~~~---~ 278 (513)
T KOG0254|consen 208 WRIPLGLALIPAVILALGMLFLPESPRWL-IEKGRLEEAKRSLKRLRGLS---PEDVEVELELLKIKL--LVEAEV---A 278 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChHHH-HHcCChHHHHHHHHHHhCCC---CcchHHHHHHHHHHH--HHhhhc---c
Confidence 99999999999999887788899999998 66777788888888888744 233333333333110 000000 0
Q ss_pred ccccchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhcc
Q 036040 81 DKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGL 160 (338)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (338)
+.+..+.+++.+...++ .++...+..+.+..+++....|.+.++++.|..... .....+..+..
T Consensus 279 ~~~~~~~~l~~~~~~~~---~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-------------~~~~~~~~~v~ 342 (513)
T KOG0254|consen 279 EGKASWGELFSPKVRKR---LIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-------------FLASIILGVVN 342 (513)
T ss_pred cccccHHHhcCcchHHH---HHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-------------HHHHHHHHHHH
Confidence 11112344444222222 455666667777788899999999999998876542 22555666667
Q ss_pred chhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccc-----cchhhHHHHHHHHHHhhccCccceeeeeecc
Q 036040 161 IPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQK-----HNSTGFVVMYALTFFFANFGPNSTTFIVPAE 235 (338)
Q Consensus 161 ~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 235 (338)
+++..++.++.||+|||++++.+...+.+++++++........+ ......+....+....+..+..+++|.+.+|
T Consensus 343 ~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sE 422 (513)
T KOG0254|consen 343 FLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSE 422 (513)
T ss_pred HHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhc
Confidence 77777889999999999999999999999999888765432221 2234444555566667778888999999999
Q ss_pred cCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHh-hee-ecccCCCC
Q 036040 236 IFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLL-FTF-LVPEPNGR 313 (338)
Q Consensus 236 ~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~e~~~~ 313 (338)
.+|.+.|+++.++....++..+.+....+..... ..+....|..++..+.+..+ +.+ ++|||+++
T Consensus 423 ifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~-------------~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~ 489 (513)
T KOG0254|consen 423 IFPLRLRSKGASLAVAVNWLWNFLISFFFPFITE-------------ALGIGGTFGYFGGICLLSLIIFVFFFVPETKGL 489 (513)
T ss_pred cCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-------------hccccchHHHHHHHHHHHHHHHheEEcccCCCC
Confidence 9999999999999999999988888777777752 22234556666666666666 555 99999999
Q ss_pred Chhhhhhhhhhh
Q 036040 314 SLEEISGEIEEC 325 (338)
Q Consensus 314 ~~~~~~~~~~~~ 325 (338)
+.+|+++..+..
T Consensus 490 sleei~~~~~~~ 501 (513)
T KOG0254|consen 490 TLEEINELFEEG 501 (513)
T ss_pred cHHHHHHHHHcC
Confidence 999988766544
No 7
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.93 E-value=1.7e-29 Score=228.02 Aligned_cols=278 Identities=27% Similarity=0.413 Sum_probs=186.6
Q ss_pred CchhhhhhhHHHHHHHHHHHhccCCchhhhhhcCChhhHHHHHHHhhhhcCCCCchhHHHHHhhhhccccccCCCCCCCc
Q 036040 1 WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQVQAVDQRNDVVCGAADHDDD 80 (338)
Q Consensus 1 WR~~f~~~~i~~~i~~~~~~~lpEsp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (338)
||+.+.++++++++.++..+++||||||| ..+++.+|+++.+++..+.+ .++++.+++.++.++ .+
T Consensus 170 Wr~~~~~~~~~~l~~~~~~~~~pESP~wL-~~~~~~~~A~~~l~~~~~~~-~~~~~~~~~~~~~~~------------~~ 235 (451)
T PF00083_consen 170 WRILLIFGAIPSLLVLLLRFFLPESPRWL-LSKGRDEEAEKVLRKLRGKE-IEDEEIEEIKAEKKE------------SQ 235 (451)
T ss_pred cccccccccccccccccccccccccccee-cccccccccccccccccccc-ccccccccccccccc------------cc
Confidence 99999999999998888889999999998 77777788888887744332 222222222222211 00
Q ss_pred ccccchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhcc
Q 036040 81 DKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGL 160 (338)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (338)
+.+..+.++++++..++. ..+...+..+....+++....+.+.+.++.|.++.. .......+..
T Consensus 236 ~~~~~~~~l~~~~~~~~~--~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~--------------~~~~~~~~~~ 299 (451)
T PF00083_consen 236 ESKASWRDLFRNKKYRKR--LLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSF--------------LATLILGLVN 299 (451)
T ss_pred ccceeeeecccccccccc--cccccccccccccccccccccccccccccccccccc--------------cccccccccc
Confidence 111456666666543221 223333333333445556667777777777766651 1344455666
Q ss_pred chhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhccccc--chhhHHHHHHHHHHhhccCccceeeeeecccCC
Q 036040 161 IPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKH--NSTGFVVMYALTFFFANFGPNSTTFIVPAEIFP 238 (338)
Q Consensus 161 ~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 238 (338)
+++.+++.+++||+|||++++.+..+++++.+.++.......... .....+....+...+...+..+..+.+++|++|
T Consensus 300 ~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfP 379 (451)
T PF00083_consen 300 FLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFP 379 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccc
Confidence 677778889999999999999998888877776651111111110 122223333333445555777888899999999
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCCCChhh
Q 036040 239 ARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNGRSLEE 317 (338)
Q Consensus 239 ~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~ 317 (338)
++.|+++.|+....+++++++++.+.+.+. +..+....+.++++++++..+..+ ++|||++++++|
T Consensus 380 t~~R~~~~~~~~~~~~i~~~i~~~~~~~~~-------------~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~e 446 (451)
T PF00083_consen 380 TKVRSTGIGLSYAVGRIGGFIIPFLFPYLF-------------NNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEE 446 (451)
T ss_pred cccccccccccccccccccccccccccccc-------------ccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHH
Confidence 999999999999999999999999988886 344434556677777777777766 999999999999
Q ss_pred hhhh
Q 036040 318 ISGE 321 (338)
Q Consensus 318 ~~~~ 321 (338)
++++
T Consensus 447 i~~~ 450 (451)
T PF00083_consen 447 IQEM 450 (451)
T ss_pred HHhh
Confidence 8764
No 8
>TIGR00898 2A0119 cation transport protein.
Probab=99.92 E-value=5.1e-24 Score=195.13 Aligned_cols=263 Identities=19% Similarity=0.265 Sum_probs=175.3
Q ss_pred CchhhhhhhHHHHHHHHHHHhccCCchhhhhhcCChhhHHHHHHHhhhhcCCCCchhHHHHHhhhhccccccCCCCCCCc
Q 036040 1 WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQVQAVDQRNDVVCGAADHDDD 80 (338)
Q Consensus 1 WR~~f~~~~i~~~i~~~~~~~lpEsp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (338)
||+.|++.+++.++..+..+++||||+|+ ..+++.+++.+.+++..+.|+.+..+...+....++ .+ ..
T Consensus 242 wr~~~~~~~i~~~~~~~~~~~~~esp~~l-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~--~~ 310 (505)
T TIGR00898 242 WRWLQLAVSLPTFLFFLLSWFVPESPRWL-ISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKD--------LS--SS 310 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhh--------hh--hc
Confidence 99999999998888777778899999997 666777788888888777665432211111100000 00 00
Q ss_pred ccccchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhcc
Q 036040 81 DKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGL 160 (338)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (338)
+++.+.+++++++..+. ..+...+.++.....+|+...+.+.+ +.+ .........+..
T Consensus 311 ~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---------------~~~~~~~~~~~~ 368 (505)
T TIGR00898 311 KKQYSFLDLFRTPNLRK---TTLCLMMLWFTTAFSYYGLVLDLGNL----GGN---------------IYLDLFISGLVE 368 (505)
T ss_pred cCCCcHHHHhCChHHHH---HHHHHHHHHHHHHHHHHHHhcccccc----CCC---------------hHHHHHHHHHHH
Confidence 11335566776655544 34444555666666677666655432 211 112334456677
Q ss_pred chhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCcc
Q 036040 161 IPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR 240 (338)
Q Consensus 161 ~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 240 (338)
+++.++.++++||+|||+.+.++.++++++++++.+... ..........++..++..+..+..+.+.+|.+|++
T Consensus 369 i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 442 (505)
T TIGR00898 369 LPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPV------DLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTV 442 (505)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCC------CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH
Confidence 788889999999999999999988887777666654431 11122222222233333334456678899999999
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCCCCChhh
Q 036040 241 FRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGRSLEE 317 (338)
Q Consensus 241 ~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 317 (338)
.|++++|+.++.+.+|++++|.+.+ +. ..++..++.+++++.+++.+..+++|||++++++|
T Consensus 443 ~r~~~~g~~~~~~~ig~~i~p~i~~-~~--------------~~~~~~~~~~~~~~~~~~~~~~~~lpet~~~~l~~ 504 (505)
T TIGR00898 443 VRNLGVGVCSTMARVGSIISPFLVY-LG--------------EKWLFLPLVLFGGLALLAGILTLFLPETKGVPLPE 504 (505)
T ss_pred HHhhhHhHHHHHHHHHHHHHhHHHH-HH--------------HHHHhhHHHHHHHHHHHHHHHHHcCcCCCCCCCCC
Confidence 9999999999999999999999988 43 34566778888888888877777899999887654
No 9
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.91 E-value=1.6e-22 Score=184.02 Aligned_cols=279 Identities=20% Similarity=0.279 Sum_probs=172.4
Q ss_pred CchhhhhhhHHHHHHHHHHHhccCCchhhhhhcCChhhHHHHHHHhhhhcCCCCchhHHHHHhhhhccccccCCCCCCCc
Q 036040 1 WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQVQAVDQRNDVVCGAADHDDD 80 (338)
Q Consensus 1 WR~~f~~~~i~~~i~~~~~~~lpEsp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (338)
||++|++.+++.++.++..+++||||+|+ ..+++.+++.+..++..+.+ +.+++.++..+. .+ +
T Consensus 193 Wr~~f~~~~~~~~~~~~~~~~l~~s~~~l-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~---~~----~--- 256 (479)
T PRK10077 193 WRYMFASEAIPALLFLMLLYFVPETPRYL-MSRGKQEQAEGILRKIMGNT-----LATQALQEIKHS---LD----H--- 256 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCCCcHHH-HHcCCHHHHHHHHHHHcCCh-----hHHHHHHHHHHH---HH----H---
Confidence 99999998888888777778899999996 44445555544444433211 111111111110 00 0
Q ss_pred ccccchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhcc
Q 036040 81 DKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGL 160 (338)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (338)
+.. .....+. ..............+.....++....+.|.+.++.|++... +........+..
T Consensus 257 ~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~------------~~~~~~~~~~~~ 319 (479)
T PRK10077 257 GRK-TGGKLLM----FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDI------------ALLQTIIVGVIN 319 (479)
T ss_pred hhh-hhhhhcc----hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCch------------HHHHHHHHHHHH
Confidence 000 0000000 00001111222223334445566667788888888877643 333555566777
Q ss_pred chhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCcc
Q 036040 161 IPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR 240 (338)
Q Consensus 161 ~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 240 (338)
+++.+++++++||+|||++++.+.++++++.+++...... ............+...+...+..+..+.+++|.+|++
T Consensus 320 ~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 396 (479)
T PRK10077 320 LTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT---QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNA 396 (479)
T ss_pred HHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChh
Confidence 8889999999999999999999988888777766543311 0011112222222222233334466788999999999
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC-CCCcchHHHHHHHHHHHHHhHhhee-ecccCCCCChhhh
Q 036040 241 FRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGY-PAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNGRSLEEI 318 (338)
Q Consensus 241 ~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~ 318 (338)
.|++++|+.+..+++++++++.+.+.+.+ +++ .+..++...|+++++.++++.++.+ +.||+++++.+|.
T Consensus 397 ~r~~~~g~~~~~~~~g~~~~~~~~p~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 468 (479)
T PRK10077 397 IRGKALAIAVAAQWIANYFVSWTFPMMDK--------NSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEM 468 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHh--------ccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHH
Confidence 99999999999999999999888876541 000 1356777788888877777777666 7899999988877
Q ss_pred hhhhh
Q 036040 319 SGEIE 323 (338)
Q Consensus 319 ~~~~~ 323 (338)
++..+
T Consensus 469 ~~~~~ 473 (479)
T PRK10077 469 EALWE 473 (479)
T ss_pred HHHHh
Confidence 65554
No 10
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.89 E-value=1.5e-21 Score=177.53 Aligned_cols=281 Identities=22% Similarity=0.376 Sum_probs=175.6
Q ss_pred CchhhhhhhHHHHHHHHHHHhccCCchhhhhhcCChhhHHHHHHHhhhhcCCCCchhHHHHHhhhhccccccCCCCCCCc
Q 036040 1 WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQVQAVDQRNDVVCGAADHDDD 80 (338)
Q Consensus 1 WR~~f~~~~i~~~i~~~~~~~lpEsp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (338)
||++|++.+++.++.++..+++||+|+++ ..+++.+++.+...+..+.++ +..+..++....+...+ .+ .+
T Consensus 195 w~~~f~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~--~~---- 265 (481)
T TIGR00879 195 WRIPLGLQLIPAGLLFLGLFFLPESPRWL-VGKGRVEEARKSLARLRGTSG-EDKELLDELELIDIKRS-IE--KR---- 265 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChHHH-HHcCChHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHHHH-HH--Hh----
Confidence 89999998777777777778899999985 444444443333333322221 11111111111111000 00 00
Q ss_pred ccccchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhcc
Q 036040 81 DKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGL 160 (338)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (338)
..+..+.+.++... +...+.++...+.++......+....+.|.+.++.|++... +........++.
T Consensus 266 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------------~~~~~~~~~~~~ 332 (481)
T TIGR00879 266 SVQPSWGSLFSSTR-RIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDH------------AFLVSIIVGAVN 332 (481)
T ss_pred hccccHHHHHhcCc-hhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchH------------HHHHHHHHHHHH
Confidence 00111222222111 01122344444444555555666677888888888877743 444666777788
Q ss_pred chhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccc---cchhhHHHHHHHHHHhhccCccceeeeeecccC
Q 036040 161 IPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQK---HNSTGFVVMYALTFFFANFGPNSTTFIVPAEIF 237 (338)
Q Consensus 161 ~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 237 (338)
+++.+++|+++||+|||+.+..+.++++++.+++.+........ ...........+...+...+..+....++.|.+
T Consensus 333 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (481)
T TIGR00879 333 FAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIF 412 (481)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccC
Confidence 88999999999999999999888777777666665322111111 012223333334444445555677778889999
Q ss_pred CccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCCCChh
Q 036040 238 PARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNGRSLE 316 (338)
Q Consensus 238 p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~ 316 (338)
|++.|++++|+.+...++|+++++.+.+.+. +..+|...|++.+++++++.+..+ +.||+++++.+
T Consensus 413 p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~-------------~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~ 479 (481)
T TIGR00879 413 PLSLRPKGISIAVAANWLANFIVGFLFPTML-------------ESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE 479 (481)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HhcCccceehhHHHHHHHHHHHHheecccCCCCChh
Confidence 9999999999999999999999999999987 456788888888888888777766 78888876654
No 11
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.88 E-value=8.6e-22 Score=179.30 Aligned_cols=246 Identities=16% Similarity=0.181 Sum_probs=146.6
Q ss_pred CchhhhhhhHHHHHHHHHHHhccCCchhhhhhcCChhhHHHHHHHhhhhcCCCCchhHHHHHhhhhccccccCCCCCCCc
Q 036040 1 WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQVQAVDQRNDVVCGAADHDDD 80 (338)
Q Consensus 1 WR~~f~~~~i~~~i~~~~~~~lpEsp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (338)
||++|+++++++++.++++..+||||+|+ ..+++.+.. . .+ .. . +
T Consensus 191 WR~~f~i~~~~~l~~~~~~~~~~esp~~~--~~~~~~~~~------~-~~------------~~-~-------------~ 235 (490)
T PRK10642 191 WRIPFFIALPLGIIGLYLRHALEETPAFQ--QHVDKLEQG------D-RE------------GL-Q-------------D 235 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCChhHH--HHHHhhhhh------c-cc------------cc-c-------------c
Confidence 99999998887777777777899999984 211110000 0 00 00 0 0
Q ss_pred ccccchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhc
Q 036040 81 DKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCG 159 (338)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (338)
+++.++++++++ .++.++......++....+|+...|.|.++++ .|++... +........++
T Consensus 236 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------------~~~~~~~~~~~ 298 (490)
T PRK10642 236 GPKVSFKEIATK-----HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDH------------GVLIIIAIMIG 298 (490)
T ss_pred cccCCHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------------HHHHHHHHHHH
Confidence 111233334332 12223333334445567788888999999865 4665432 33355566777
Q ss_pred cchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCc
Q 036040 160 LIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPA 239 (338)
Q Consensus 160 ~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 239 (338)
.+++.+++|+++||+|||+.++.+.++..+..+.+..... . +....+....++.++......+....+++|.+|+
T Consensus 299 ~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~ 373 (490)
T PRK10642 299 MLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILIN----S-NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPT 373 (490)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHh----C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 8888999999999999999888776543332222111110 0 1112222222222221111223344567899999
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCCCCCh
Q 036040 240 RFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGRSL 315 (338)
Q Consensus 240 ~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 315 (338)
+.|++++|+.+..+.+++.++|.+.+++.+ ...+|..++++..++++++++..+++||++++..
T Consensus 374 ~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~------------~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~ 437 (490)
T PRK10642 374 HIRYSALAAAFNISVLVAGLTPTLAAWLVE------------STQNLMMPAYYLMVVAVIGLITGVTMKETANRPL 437 (490)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhCCchHHHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 999999999877788888899999998873 2234565665666666666666667799876543
No 12
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=99.82 E-value=9.8e-19 Score=160.69 Aligned_cols=273 Identities=19% Similarity=0.239 Sum_probs=178.4
Q ss_pred CchhhhhhhHHHHHHHHHHHhccCCchhhhhhcCChhhHHHHHHHhhhhcCCCCc--hhHHHHHhhhhccccccCCCCCC
Q 036040 1 WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSN--NIIEQVQAVDQRNDVVCGAADHD 78 (338)
Q Consensus 1 WR~~f~~~~i~~~i~~~~~~~lpEsp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 78 (338)
||+.+++..+++++.++++++.||||||+ ..+++.+++.+.+++..+.|+...+ +..++....++ ++..
T Consensus 233 Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl-~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~--------~~~~ 303 (521)
T KOG0255|consen 233 WRWLFWIISIPSGLFLLLWFLPPESPRWL-LSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRP--------LKLL 303 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcChHHH-HHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhH--------hhhh
Confidence 99999999999998888777778999998 6777778888888888877632221 11111111111 1111
Q ss_pred CcccccchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHh
Q 036040 79 DDDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALC 158 (338)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
+.+.+..+.++++.+..++ .++...+.++.....+|+.......+ |.+. .........
T Consensus 304 ~~~~~~~~~~l~~~~~l~~---~~~~~~~~~~~~~~~y~gl~~~~~~l----g~~~---------------~~~~~~~~~ 361 (521)
T KOG0255|consen 304 FTEPKISFLDLFRTPRLRY---RTLYLLFIWFVFSLVYYGLSLNVSGL----GGNI---------------YLNFTLSGL 361 (521)
T ss_pred ccCCCCchhhhhcCHHHHH---HHHHHHHHHHHHhHHHHhhhhhhhhc----CchH---------------HHHHHHHHH
Confidence 1123345677777765444 45666667777777888776544321 1111 112333333
Q ss_pred ccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCC
Q 036040 159 GLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFP 238 (338)
Q Consensus 159 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 238 (338)
...++....+...|+.|||.....+..+..++++..++..... ......++..+..++...+. ...+.+.+|++|
T Consensus 362 ~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~el~p 436 (521)
T KOG0255|consen 362 VELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDL----GGWLHWILPLLGKFFIGSAF-NLIFLYSAELIP 436 (521)
T ss_pred HHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcc
Confidence 6667777888999999999999999999988888888766321 10122222333333333333 344788999999
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhe-eecccCCCCChhh
Q 036040 239 ARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFT-FLVPEPNGRSLEE 317 (338)
Q Consensus 239 ~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~ 317 (338)
+..|..+.+.....+.++++++|.+...... ......+.+++..+.+...+. .++|||+++.+.+
T Consensus 437 t~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~--------------~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~ 502 (521)
T KOG0255|consen 437 TVVRNTAVGAISAAARLGSILAPLFPLLLRQ--------------MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPG 502 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCch
Confidence 9999999999999999999999998876641 222223333455555555555 5999999998866
Q ss_pred hhhhhh
Q 036040 318 ISGEIE 323 (338)
Q Consensus 318 ~~~~~~ 323 (338)
..++.+
T Consensus 503 t~~~~~ 508 (521)
T KOG0255|consen 503 TLLDAE 508 (521)
T ss_pred hHHHHH
Confidence 544443
No 13
>PRK09952 shikimate transporter; Provisional
Probab=99.80 E-value=1.7e-18 Score=155.47 Aligned_cols=237 Identities=16% Similarity=0.118 Sum_probs=140.7
Q ss_pred CchhhhhhhHHHHHHHHHHHhccCCchhhhhhcCChhhHHHHHHHhhhhcCCCCchhHHHHHhhhhccccccCCCCCCCc
Q 036040 1 WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQVQAVDQRNDVVCGAADHDDD 80 (338)
Q Consensus 1 WR~~f~~~~i~~~i~~~~~~~lpEsp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (338)
||++|++++++.++.+.++..+||||+|+ .++++.+. .
T Consensus 198 Wr~~f~~~~~~~l~~~~l~~~~~es~~~~--~~~~~~~~-----------------------------------~----- 235 (438)
T PRK09952 198 WRIPFLFSIVLVLIALWVRNGMEESAEFE--QQQHEQAA-----------------------------------A----- 235 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCChhHH--HHHhhccc-----------------------------------c-----
Confidence 99999999888877777777899999984 21110000 0
Q ss_pred ccccchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhc
Q 036040 81 DKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCG 159 (338)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (338)
+++.+..+.+ +++++.........++....+|....|.|.++++ .|++... .........+.
T Consensus 236 ~~~~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~------------~~~~~~~~g~~ 298 (438)
T PRK09952 236 KKRIPVIEAL-----LRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPREL------------FLNIGLLVGGL 298 (438)
T ss_pred cccCCHHHHH-----HHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------------HHHHHHHHHHH
Confidence 0000111111 1111122223333445556677778888888765 4554421 11123334555
Q ss_pred cchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCc
Q 036040 160 LIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPA 239 (338)
Q Consensus 160 ~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 239 (338)
.+++.++.|+++||+|||+.+..+.++..++...+..... ..+.....+...+..++......+..+++++|.+|+
T Consensus 299 ~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~ 374 (438)
T PRK09952 299 SCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE----AQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGA 374 (438)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 6677889999999999999988776555443332222110 011122222222222222233344566788999999
Q ss_pred cchhhhHHHHHHHHH-HHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCC
Q 036040 240 RFRSTCHGISAAAGK-AGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPN 311 (338)
Q Consensus 240 ~~R~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 311 (338)
+.|+++.|+.+..+. +++.++|.+.+.+.+. ...+|...+...+++.+++.+..+.++|++
T Consensus 375 ~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~-----------~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~ 436 (438)
T PRK09952 375 SYRYSGAGVGYQVASVVGGGFTPFIAAALVTY-----------FGGSWHSVAIYLLAGCLISAMTALLMKDNQ 436 (438)
T ss_pred chhHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-----------cCCCchHHHHHHHHHHHHHHHHHHHccccc
Confidence 999999999877655 7899999999998731 123477777777777777777666666654
No 14
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.79 E-value=1.5e-18 Score=146.81 Aligned_cols=243 Identities=16% Similarity=0.240 Sum_probs=166.3
Q ss_pred CchhhhhhhHHHHH-HHHHHHhccCCchhhhhhcCChhhHHHHHHHhhhhcCCCCchhHHHHHhhhhccccccCCCCCCC
Q 036040 1 WRIVLMFGALPIAF-TYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQVQAVDQRNDVVCGAADHDD 79 (338)
Q Consensus 1 WR~~f~~~~i~~~i-~~~~~~~lpEsp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (338)
||..|++.++.+++ .+++++.++|+|+-..+. .-|| ..++..+ . . ++++
T Consensus 184 w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP--~ie~---------------------~~~d~~e----~--~-~~~~ 233 (448)
T COG2271 184 WRAAFYFPGIIAIIVALILLFLLRDRPQSEGLP--PIEE---------------------YRGDPLE----I--Y-EEEK 233 (448)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCccccCCC--CHHH---------------------hhcCchh----h--h-hhhc
Confidence 89999998887776 566677789999753111 1111 0000000 0 0 0111
Q ss_pred cccccchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHh
Q 036040 80 DDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALC 158 (338)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
..+.-+.++.|.+-.+++. .++.+.+..+.....-|++..|.|.|+.+ .|++... +.......-+
T Consensus 234 ~~~~ls~~~i~~~YVL~Nk--~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~------------a~~a~~lfE~ 299 (448)
T COG2271 234 ENEGLTAWQIFVKYVLKNK--LIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVK------------ANWAISLFEV 299 (448)
T ss_pred cCCCccHHHHHHHHHHcCh--HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHH------------HHHHHHHHHH
Confidence 1122456666666665553 67788888889999999999999999988 3666644 5557788899
Q ss_pred ccchhHHHHHHHHHhh--chHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeeccc
Q 036040 159 GLIPGYWITVILIDII--GRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEI 236 (338)
Q Consensus 159 ~~~~~~~~~g~l~d~~--grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 236 (338)
++++|++++|+++||+ |||...-+.+.+....+++.. +..++.+.....++....++...|+.-..-....|.
T Consensus 300 agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~-----w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~ 374 (448)
T COG2271 300 AGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLY-----WLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEF 374 (448)
T ss_pred HhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH-----HcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 9999999999999996 677655433222222222111 112223345555555666666777766666778999
Q ss_pred CCccchhhhHHHHHHHHHH-HHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040 237 FPARFRSTCHGISAAAGKA-GAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF 305 (338)
Q Consensus 237 ~p~~~R~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (338)
.|++.-|++.|+...++.+ |+..+....+++. +.+||...|.++.+.++++.++..
T Consensus 375 ~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~-------------d~~gW~g~Fi~~~~~a~l~~lll~ 431 (448)
T COG2271 375 VPKKAAGTATGFVGLFAYLIGAALAGLPLGYIA-------------DTWGWDGGFIVLSIAALLAILLLL 431 (448)
T ss_pred ccHhhccchhchhhhHHHHhhHHhcCCcceeeE-------------ecCCCcchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 8888888888887 458999999988888888777665
No 15
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.75 E-value=4.4e-17 Score=146.32 Aligned_cols=231 Identities=17% Similarity=0.179 Sum_probs=128.5
Q ss_pred CchhhhhhhHHHHHHHHHHHhccCCchhhhhhcCChhhHHHHHHHhhhhcCCCCchhHHHHHhhhhccccccCCCCCCCc
Q 036040 1 WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQVQAVDQRNDVVCGAADHDDD 80 (338)
Q Consensus 1 WR~~f~~~~i~~~i~~~~~~~lpEsp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (338)
||++|+++++++++.++++..+||+|++. .++ +
T Consensus 197 Wr~~F~i~~~~~ll~~~~~~~~~e~~~~~--~~~---~------------------------------------------ 229 (432)
T PRK10406 197 WRIPFALGAVLAVVALWLRRQLDETSQQE--TRA---L------------------------------------------ 229 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCchHH--Hhh---h------------------------------------------
Confidence 99999999999888777777899998762 100 0
Q ss_pred ccccchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhc
Q 036040 81 DKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCG 159 (338)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (338)
+++.+++++++++ + ..+......+.....+|+...|.|.++++ .|++..+ ......+..++
T Consensus 230 ~~~~~~~~l~~~~---~---~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~------------~~~~~~i~~~~ 291 (432)
T PRK10406 230 KEAGSLKGLWRNR---R---AFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANV------------ASGIMTAALFV 291 (432)
T ss_pred cccccHHHHHhhH---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------------HHHHHHHHHHH
Confidence 0011233333321 1 11222222333456678888899998865 4665432 22234444555
Q ss_pred cchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCc
Q 036040 160 LIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPA 239 (338)
Q Consensus 160 ~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 239 (338)
..++.++.|+++||+|||+.++++.++.++....+..... ...+......+..+.... .....+..+.+.+|.+|+
T Consensus 292 ~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~fp~ 367 (432)
T PRK10406 292 FMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQ---NVSSPYAAFGLVMCALLI-VSFYTSISGILKAEMFPA 367 (432)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH---cCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCC
Confidence 5677788899999999999877665543333222211110 001111111111111111 111123355678999999
Q ss_pred cchhhhHHHHHHHHHH-HHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCCCCC
Q 036040 240 RFRSTCHGISAAAGKA-GAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGRS 314 (338)
Q Consensus 240 ~~R~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 314 (338)
+.|++++|+.+..++. .+...|.+.+.+. ....+...+++.++..+++.+..++ .++++++
T Consensus 368 ~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~-------------~~g~~~~~~~~~~~~~~i~~~~~~~-l~~~~~~ 429 (432)
T PRK10406 368 QVRALGVGLSYAVANALFGGSAEYVALSLK-------------SIGMETAFFWYVTLMAVVAFLVSLM-LHRKGKG 429 (432)
T ss_pred CccchhhhHHHHHHHHHHHhHHHHHHHHHH-------------HhCCCcHHHHHHHHHHHHHHHHHHH-hhhcccc
Confidence 9999999999987775 3445777777553 2222445555555666665555444 3444443
No 16
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.74 E-value=5.3e-17 Score=144.76 Aligned_cols=166 Identities=14% Similarity=0.135 Sum_probs=114.4
Q ss_pred HHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHH
Q 036040 110 LLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTV 189 (338)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 189 (338)
+......+....+.|.++++.|+++.+ .........++.+++.++.|++.||+|||+.+..+.+...+
T Consensus 230 ~~~~~~~~~~~~~~p~~~~~~g~s~~~------------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 297 (406)
T PRK11551 230 FFTLIVLYFLLNWLPSLLVGQGLSRSQ------------AGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILA 297 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhh------------hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 334445666777889999888877755 23356666778889999999999999999988876555554
Q ss_pred HHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 036040 190 FMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQ 269 (338)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~ 269 (338)
+..++.... + .....+..+..++...+..+..+++.+|.+|++.|+++.|+.+....+|+.++|.+.+.+.+
T Consensus 298 ~~~~~~~~~-------~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~ 369 (406)
T PRK11551 298 SLAALAAAP-------S-FAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLA 369 (406)
T ss_pred HHHHHHhcC-------c-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhc
Confidence 444333222 1 22222233333333344456677788999999999999999999999999999999999973
Q ss_pred ccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeec
Q 036040 270 DQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLV 307 (338)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (338)
...++...+...+.+.+++.+..+++
T Consensus 370 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 370 ------------LGRSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred ------------cCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 23456666666655555555554433
No 17
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.74 E-value=7.2e-17 Score=145.72 Aligned_cols=184 Identities=14% Similarity=0.119 Sum_probs=112.1
Q ss_pred HHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhh--chHHH
Q 036040 103 LGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDII--GRVTI 179 (338)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~ 179 (338)
+...+..++.....++...|.|.++++ .|++..+ +.....+..++.+++.+++|+++||+ |||..
T Consensus 256 ~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~------------~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~ 323 (452)
T PRK11273 256 WYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK------------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA 323 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHccCCcch
Confidence 344444455555667788899999987 4666544 33355566777888999999999999 55543
Q ss_pred HHH-HHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHH
Q 036040 180 QLI-GFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAI 258 (338)
Q Consensus 180 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~ 258 (338)
..+ ...+..+...++.... ..+.... .......+....+.......+..|.+|++.|++++|+.+...++|+.
T Consensus 324 ~~~~~~~l~~~~~~~~~~~~-----~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ 397 (452)
T PRK11273 324 TGVFFMTLVTIATIVYWLNP-----AGNPTVD-MACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS 397 (452)
T ss_pred HHHHHHHHHHHHHHHHHHhc-----ccChHHH-HHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHH
Confidence 222 1111122221111111 0111111 11222222222222222334567999999999999999998888765
Q ss_pred H-HHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCCCCChhh
Q 036040 259 I-GAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGRSLEE 317 (338)
Q Consensus 259 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 317 (338)
+ +|.+.+.+. +..||+..|++.+++++++++...+...+++|+.+|
T Consensus 398 ~~g~~v~g~l~-------------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (452)
T PRK11273 398 VAASAIVGYTV-------------DFFGWDGGFMVMIGGSILAVILLIVVMIGEKRHHEE 444 (452)
T ss_pred HhhhhhHHHHH-------------HHhcchHHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 5 799999998 567899999888888888877766444343444333
No 18
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.74 E-value=3.8e-17 Score=146.72 Aligned_cols=177 Identities=13% Similarity=0.058 Sum_probs=110.4
Q ss_pred HHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhh--chH-HHH
Q 036040 105 TASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDII--GRV-TIQ 180 (338)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--grr-~~~ 180 (338)
..+..+.....++++..|.|.++++ .|++..+ +........++.+++.+++|+++||+ ++| ...
T Consensus 248 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------------a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~ 315 (434)
T PRK11663 248 LSFSYVLVYVVRAAINDWGNLYMSETLGVDLVT------------ANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMN 315 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHH------------HHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHH
Confidence 3344445555666777899999854 5777654 33456667788889999999999998 333 322
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHH
Q 036040 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIG 260 (338)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~ 260 (338)
....+...+....+..... .+ ........+..++...+..........|.+|++.|++++|+.++..++|+.++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~ 389 (434)
T PRK11663 316 LIFAAGILLSVGSLWLMPF-----AS-YVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALS 389 (434)
T ss_pred HHHHHHHHHHHHHHHHccc-----cc-HHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHh
Confidence 2221111111111111110 01 11122222222222222222233456899999999999999999999999999
Q ss_pred HHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCC
Q 036040 261 AFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNG 312 (338)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~ 312 (338)
|.+.+.+. +..||+..|.+.+++++++.+... ..++.++
T Consensus 390 p~~~g~l~-------------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 429 (434)
T PRK11663 390 GYPLAKVL-------------EIWHWTGFFVVISIAAGISALLLLPFLNAQAP 429 (434)
T ss_pred cccHHHHH-------------HhcccHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 99999998 567899999988888777766554 4444433
No 19
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.73 E-value=5.2e-17 Score=142.09 Aligned_cols=168 Identities=12% Similarity=0.134 Sum_probs=104.9
Q ss_pred HHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchH---HH
Q 036040 103 LGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRV---TI 179 (338)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr---~~ 179 (338)
+...+.+++....+|++..|+|.++++.|++.. ......+..+. +.+..++++||..|| +.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-------------~~~~~~l~~~~---g~~g~~~~~d~~~r~~~r~~ 258 (368)
T TIGR00903 195 WIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-------------AGDAVALAILA---GLIGVAVIPDRVARAGLRSI 258 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-------------HHHHHHHHHHH---HHHHHHHhhHHhhhhhhHHH
Confidence 445566777778888999999999988665431 11123333333 333457888887543 33
Q ss_pred HHH-HHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHH
Q 036040 180 QLI-GFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAI 258 (338)
Q Consensus 180 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~ 258 (338)
... ..+..++....+.... +... .+....+.+++..+..+..+++.+|.+|++.|+++.|+.+..++++++
T Consensus 259 ~~~~~~~~~a~~~~~~~~~~-------~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~ 330 (368)
T TIGR00903 259 YIRAAALLIAAFFLALAFEL-------NRLA-LFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISV 330 (368)
T ss_pred HHHHHHHHHHHHHHHHHHcc-------ccHH-HHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHH
Confidence 332 2222222222222111 1122 222223333334444455778899999999999999999999999999
Q ss_pred HHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeeccc
Q 036040 259 IGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPE 309 (338)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 309 (338)
++|.+.+.+. . +....|.+++++.+++.+....+++
T Consensus 331 ~~~~~~~~~~-------------~--~~~~~f~~~~~~~~i~~~~~~~~~~ 366 (368)
T TIGR00903 331 ALALAAMLFI-------------S--SAEAYFTFLAILITIAFAIALLLPN 366 (368)
T ss_pred HHHHHHHHHh-------------c--CHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999998875 2 6667788888887777666543343
No 20
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.73 E-value=2.2e-16 Score=141.73 Aligned_cols=138 Identities=12% Similarity=0.107 Sum_probs=93.6
Q ss_pred hHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 036040 113 DVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFML 192 (338)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 192 (338)
....+....+.|.++++.|+++.. .........++.+++.+++|++.||+|||+.+..+.++..+..+
T Consensus 244 ~~~~~~~~~~~~~~~~~~g~~~~~------------~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~ 311 (426)
T PRK12307 244 FGANWPIFGLLPTYLAGEGFDTGV------------VSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIF 311 (426)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 334445566788888887765543 33355666778889999999999999999998887766555444
Q ss_pred HHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 036040 193 ALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAA 268 (338)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~ 268 (338)
.+..... ..........+..++...+..+....++.|.+|++.|++++|+.+....+++.++|.+.+.+.
T Consensus 312 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~ 381 (426)
T PRK12307 312 PLFRIPQ------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLG 381 (426)
T ss_pred HHHHHcc------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH
Confidence 3332210 111111112222222222333444567799999999999999999999999999999999997
No 21
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.73 E-value=1.3e-16 Score=144.72 Aligned_cols=185 Identities=12% Similarity=0.093 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHH
Q 036040 102 LLGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180 (338)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 180 (338)
++...+..++....+++...|.|.|+++ .|+++.+ +........++.+++.+++|+++||+|||+.+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~------------a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~ 327 (467)
T PRK09556 260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKED------------AINTFTLFEIGALVGSLLWGWLSDLANGRRAL 327 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCchH
Confidence 4445555666666777888999998865 6776644 33456667778889999999999999998876
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHH-HHHH
Q 036040 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKA-GAII 259 (338)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~-g~~~ 259 (338)
........++..++.... ..+ .....+..+..+....+..........|.+|++.|+++.|+.+..+++ |..+
T Consensus 328 ~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~ 401 (467)
T PRK09556 328 VACIALALIIFTLGVYQH-----ATS-EYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSF 401 (467)
T ss_pred HHHHHHHHHHHHHHHHHh-----cCc-HHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHH
Confidence 654433332222211111 111 222222222233222232222234567999999999999999999997 7799
Q ss_pred HHHHHHHhhh-ccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheee
Q 036040 260 GAFGFLYAAQ-DQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFL 306 (338)
Q Consensus 260 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (338)
+|.+.+.+.+ ..++. ..+++ ...+|+..|++.+++.+++.+..++
T Consensus 402 ~~~~~G~i~~~~~~g~-~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 402 AKVGLGMIADPTKNGT-PIFGY-TLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HhhhHHHHhccccccc-ccccc-cccChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999984 11000 00000 1457999999888888887666553
No 22
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.73 E-value=1.3e-16 Score=142.13 Aligned_cols=162 Identities=12% Similarity=0.123 Sum_probs=104.7
Q ss_pred HHHHHHHHHHhHhhhhhhccHHHHHHHc--cCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHH
Q 036040 103 LGTASTWLLLDVSYFSQNLFQKEIFTAV--GWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180 (338)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 180 (338)
+...+.+++....++++..|.|.++++. |+++.+ +........++.++|.+++|+++||++||+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~------------~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~ 312 (412)
T TIGR02332 245 MLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIM------------IGLLAAIPQFCTIFGMIWWSRHSDRLKERKHH 312 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------------hHHHhhHHHHHHHHHHHHHHHHhcccCccHHH
Confidence 4455556667777888899999999885 333322 34467777888899999999999999977643
Q ss_pred -HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHH
Q 036040 181 -LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAII 259 (338)
Q Consensus 181 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~ 259 (338)
....+...+.. ++.... . ........... ..++.....+..+....|.+|++.|++++|+.+..+++|+++
T Consensus 313 ~~~~~~~~~~~~-~~~~~~-----~-~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~ 384 (412)
T TIGR02332 313 TALPYLFAAAGW-LLASAT-----D-HNLIQLLGIIM-ASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSAL 384 (412)
T ss_pred HHHHHHHHHHHH-HHHHhc-----C-CHHHHHHHHHH-HHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhh
Confidence 33333333222 221111 0 11111111111 111122223334456678899999999999999999999999
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCc-chHHHHHHHHHHH
Q 036040 260 GAFGFLYAAQDQDKSKADPGYPAGI-GIKNTLFLLAAVN 297 (338)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 297 (338)
+|.+.+.+. +.. +|+..+.+.+++.
T Consensus 385 ~p~~~g~i~-------------~~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 385 SPFLIGILK-------------DATGSFNSGLWFVAALL 410 (412)
T ss_pred hhhhccccc-------------ccCCCCchhHHHHHHHH
Confidence 999999987 344 5888887666543
No 23
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.72 E-value=2.9e-16 Score=139.85 Aligned_cols=140 Identities=14% Similarity=0.096 Sum_probs=94.7
Q ss_pred HHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHH
Q 036040 111 LLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTV 189 (338)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 189 (338)
......+....+.|.++++ .|+++.+ .........++.+++.++.+++.||+|||+.+..+.+.+.+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~g~s~~~------------~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~ 316 (405)
T TIGR00891 249 FANLYSHPIQDLLPTYLKADLGLSPHT------------VANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQL 316 (405)
T ss_pred HHHHHHhhhhhhhHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHH
Confidence 3344445566677777754 5666543 33356667788889999999999999999988877655433
Q ss_pred HHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 036040 190 FMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQ 269 (338)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~ 269 (338)
..+...... ...........+.++...+..+....+++|.+|++.|++++|+.+....+|+.++|.+.+.+.+
T Consensus 317 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~ 389 (405)
T TIGR00891 317 LIIPVFAIG-------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQ 389 (405)
T ss_pred HHHHHHHhC-------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 222221111 1122222222233333344455666788999999999999999999999999999999999983
No 24
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.70 E-value=2.5e-16 Score=140.87 Aligned_cols=172 Identities=9% Similarity=-0.074 Sum_probs=119.5
Q ss_pred hhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 036040 117 FSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALA 195 (338)
Q Consensus 117 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 195 (338)
++...+.|.+.++ .|.++.. .........++.+++.++.+++.||.++++.+..+.++.++..+++.
T Consensus 240 ~~~~~~~p~~~~~~~g~~~~~------------~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 307 (417)
T PRK10489 240 SAVRVLYPALADEVWQMGAAQ------------IGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFG 307 (417)
T ss_pred HhHHHhhHHHHHhccCCChhH------------hHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHH
Confidence 4456678888887 6776544 33355667788888999999999998877777777665555554443
Q ss_pred hhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 036040 196 IPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSK 275 (338)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 275 (338)
... + .....+..++.+.+.....+...+++.|..|++.|+++.|+.+....+|..+++.+.+.+.
T Consensus 308 ~~~-------~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~------- 372 (417)
T PRK10489 308 LMP-------M-WILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLG------- 372 (417)
T ss_pred ccc-------h-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHH-------
Confidence 322 1 2222222222233222223445577899999999999999999999999999999999998
Q ss_pred CCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCCCChhhhhhh
Q 036040 276 ADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNGRSLEEISGE 321 (338)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~ 321 (338)
+..|....+++.+++.++..+... .++++++++.+|++++
T Consensus 373 ------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (417)
T PRK10489 373 ------AMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVD 413 (417)
T ss_pred ------HHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence 567777787777766555544444 7799988887776554
No 25
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.69 E-value=4.6e-16 Score=142.37 Aligned_cols=150 Identities=11% Similarity=0.093 Sum_probs=102.6
Q ss_pred hhhhccHHHHHH-HccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 036040 117 FSQNLFQKEIFT-AVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALA 195 (338)
Q Consensus 117 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 195 (338)
+....++|.+++ +.|+++.+ .........++.+++.+++|+++||+|||+.+..+.++..+..+++.
T Consensus 292 ~~~~~~lp~~l~~~~g~~~~~------------~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 359 (496)
T PRK03893 292 WPIQALLPTYLKTDLGYDPHT------------VANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVF 359 (496)
T ss_pred chHHHHHHHHHHhhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHh
Confidence 345678898885 56776644 44466777888889999999999999999988877655544433322
Q ss_pred hhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 036040 196 IPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSK 275 (338)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 275 (338)
... . ..........+..++...+..+....+++|.+|++.|++++|+.+....+|+.++|.+.+.+.
T Consensus 360 ~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~------- 426 (496)
T PRK03893 360 AIG-----G-ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIA------- 426 (496)
T ss_pred hcc-----c-cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHh-------
Confidence 211 0 111222222222222233334455567899999999999999999999999999999999997
Q ss_pred CCCCCCCCcchHHHHHHHHHHH
Q 036040 276 ADPGYPAGIGIKNTLFLLAAVN 297 (338)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~ 297 (338)
+..|++..+...++..
T Consensus 427 ------~~~g~~~~~~~~~~~~ 442 (496)
T PRK03893 427 ------QRLDLGTALASLSFSL 442 (496)
T ss_pred ------ccCChHHHHHHHHHHH
Confidence 5778887775555433
No 26
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.69 E-value=2.8e-16 Score=147.00 Aligned_cols=194 Identities=15% Similarity=0.021 Sum_probs=135.4
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchH
Q 036040 98 HGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRV 177 (338)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr 177 (338)
.|..++...+..+........+...+|.+.+++|.++.+ ..++.+...++.++|.+++|+++||+|||
T Consensus 165 ~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~------------~g~l~s~~~lG~iiG~li~G~LsDR~GRR 232 (742)
T TIGR01299 165 QWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSG------------KGMLGLIVYLGMMVGAFFWGGLADKLGRK 232 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 334444444444444444555666788888888876644 34466777889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHH
Q 036040 178 TIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGA 257 (338)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~ 257 (338)
+++++++++.+++.++.++... ...+++..++.+++.++..+...++++|.+|++.|++.+++..++..+|.
T Consensus 233 ~~lii~lil~~i~~ll~afa~s--------~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ 304 (742)
T TIGR01299 233 QCLLICLSVNGFFAFFSSFVQG--------YGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGG 304 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence 9999988887777766665432 33444455555655566667888999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCC
Q 036040 258 IIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPN 311 (338)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 311 (338)
++++.+...+.....-...........+|+..+++.++++++.+++.+++||+.
T Consensus 305 ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESP 358 (742)
T TIGR01299 305 IYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESP 358 (742)
T ss_pred HHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 999887766542110000000001234799988887777777766666889973
No 27
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.69 E-value=8.6e-16 Score=135.29 Aligned_cols=153 Identities=19% Similarity=0.051 Sum_probs=107.7
Q ss_pred hhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhh
Q 036040 119 QNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPY 198 (338)
Q Consensus 119 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~ 198 (338)
...+.+.+.++.|.++.+ .........++.+++.++.|++.||+|||+.+..+.++..++.+++....
T Consensus 224 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~ 291 (377)
T TIGR00890 224 LIGLYKPYGQSLGLSDGF------------LVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIP 291 (377)
T ss_pred HHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcc
Confidence 344555566666654432 33456677788889999999999999999998888777766665554332
Q ss_pred hhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 036040 199 HHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADP 278 (338)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 278 (338)
. .............+.......+....+.+|.+|++.|+++.|+.+....+|..++|.+.+.+.
T Consensus 292 ~------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~---------- 355 (377)
T TIGR00890 292 M------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHAL---------- 355 (377)
T ss_pred c------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 1 111112122222333333334455567899999999999999999999999999999999987
Q ss_pred CCCCCcchHHHHHHHHHHHHHhHh
Q 036040 279 GYPAGIGIKNTLFLLAAVNVLGLL 302 (338)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~ 302 (338)
+..||+..|.+.+++.+++++
T Consensus 356 ---~~~g~~~~f~~~~~~~~~~~~ 376 (377)
T TIGR00890 356 ---TEIGFEYTFIVTGAFALTSLA 376 (377)
T ss_pred ---hhhchhhHHHHHHHHHHHhcc
Confidence 577899999888877766543
No 28
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.68 E-value=1.3e-15 Score=135.86 Aligned_cols=188 Identities=12% Similarity=0.022 Sum_probs=140.8
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchH
Q 036040 98 HGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRV 177 (338)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr 177 (338)
.++.++...+.+++............|.+.+++|+++.+ .........++..++.++.|+++||+|||
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~------------~g~~~s~~~~~~~~~~~~~g~l~dr~G~r 73 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATM------------FGLAATLFYAAYVICGIPSNIMLAIIGAR 73 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHH------------HHHHHHHHHHHHHHHHhhHHHHHHHhChH
Confidence 344566667777777777777788888888888888765 33466677888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHH
Q 036040 178 TIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGA 257 (338)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~ 257 (338)
+++..+.++.+++.++.++... ...+....++.+.+..+..+....++.|.+|++.|++++|+.+....+|.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~ 145 (412)
T TIGR02332 74 RWIAGIMVLWGIASTATMFATG--------PESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTM 145 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 9999998888888777766542 33444455555555555566666788999999999999999999999999
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCC
Q 036040 258 IIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNG 312 (338)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~ 312 (338)
.+++.+.+.+.+.. +..+..||+..|++.++..++..++.+ ++||++.
T Consensus 146 ~~~~~~~~~l~~~~-------~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 146 ALGLILSGYILALD-------GLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHHHHHHHHHhCC-------CCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 99999988875210 001246999999988877766555444 7788764
No 29
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.68 E-value=1.7e-15 Score=134.22 Aligned_cols=174 Identities=17% Similarity=0.131 Sum_probs=110.3
Q ss_pred HHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHH
Q 036040 104 GTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLI 182 (338)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~ 182 (338)
...+..++.....+....+.|.++++ .|.++.+ .........++.+++.+++|+++||+|||+....
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 286 (399)
T TIGR00893 219 GLALGQFLVNIGLGFFLTWFPTYLVQERGLSILE------------AGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLV 286 (399)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHH------------hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Confidence 34444555556666777788888765 4655543 3345666777888899999999999999961111
Q ss_pred -HHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHH
Q 036040 183 -GFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGA 261 (338)
Q Consensus 183 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~ 261 (338)
......++.++........ ...+........ ...++...+..+..+++.+|.+|++.|+++.|+.+....+|+.++|
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~ 364 (399)
T TIGR00893 287 FARKTAIIAGLVLSLLMFAT-NYVNIPYAALAL-VALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGP 364 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHH-HHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhh
Confidence 1111111111111111000 001112222222 2222333335677888999999999999999999999999999999
Q ss_pred HHHHHhhhccccCCCCCCCCCCcc-hHHHHHHHHHHHHHhHhhe
Q 036040 262 FGFLYAAQDQDKSKADPGYPAGIG-IKNTLFLLAAVNVLGLLFT 304 (338)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 304 (338)
.+.+.+. +..| ++..+.+.+++.+++.+..
T Consensus 365 ~i~g~l~-------------~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 365 IVIGAIA-------------ATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred HHhhhhc-------------cCCCchhHHHHHHHHHHHHHHHHH
Confidence 9999997 5566 8888888777777665543
No 30
>PRK15075 citrate-proton symporter; Provisional
Probab=99.67 E-value=2.2e-15 Score=135.37 Aligned_cols=146 Identities=14% Similarity=0.034 Sum_probs=91.6
Q ss_pred HHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHH
Q 036040 107 STWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFF 185 (338)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~ 185 (338)
+..+.....++....|.|.++++ .|++..+ ......+..++.+++.+++|+++||+|||+.++.+..
T Consensus 245 ~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~------------~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~ 312 (434)
T PRK15075 245 LMVAMTTVSFYLITVYTPTFGKTVLHLSAAD------------SLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTV 312 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 33344556677888899999887 5776543 3345666777788899999999999999998877644
Q ss_pred HHHHHHHHH-HhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHH-HHHHHHHH
Q 036040 186 FMTVFMLAL-AIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKA-GAIIGAFG 263 (338)
Q Consensus 186 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~-g~~~~~~~ 263 (338)
...+..... .... .. ..........++.++......+..+.+.+|.+|++.|+++.|+.+..+.. ++.++|.+
T Consensus 313 ~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~ 387 (434)
T PRK15075 313 LAILTAYPALSWLV----AA-PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAI 387 (434)
T ss_pred HHHHHHHHHHHHHH----cC-CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHH
Confidence 433221111 1111 01 11111111111111111222233446789999999999999997666655 57889999
Q ss_pred HHHhhh
Q 036040 264 FLYAAQ 269 (338)
Q Consensus 264 ~~~~~~ 269 (338)
.+.+.+
T Consensus 388 ~g~i~~ 393 (434)
T PRK15075 388 STWLIH 393 (434)
T ss_pred HHHHHH
Confidence 998874
No 31
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.67 E-value=1.2e-15 Score=135.15 Aligned_cols=167 Identities=15% Similarity=0.116 Sum_probs=104.3
Q ss_pred HHHHHHHHHHhHhhhhhhccHHHHHH-HccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHH
Q 036040 103 LGTASTWLLLDVSYFSQNLFQKEIFT-AVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQL 181 (338)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~ 181 (338)
+......+.....++....+.|.+.+ +.|.++.+ .........++.+++.+++|+++||+|||+.+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~ 289 (394)
T TIGR00883 222 LLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANS------------ALLVLMLSLILFFITIPLSGALSDRIGRRPVLI 289 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhH------------HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 33444445555667777788888884 45666543 333556667778888999999999999999877
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHH-HHHHHHHHHH
Q 036040 182 IGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISA-AAGKAGAIIG 260 (338)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~-~~~~~g~~~~ 260 (338)
....+..+.......... .. ..........+..++......+...++++|.+|++.|+++.++.+ ....+|..++
T Consensus 290 ~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~ 365 (394)
T TIGR00883 290 IFTVLAALLAVPLLMALL---DS-GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFA 365 (394)
T ss_pred HHHHHHHHHHHHHHHHHh---cC-CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHH
Confidence 554444333221111110 00 112222223333333333444566788999999999999999864 4456788899
Q ss_pred HHHHHHhhhccccCCCCCCCCCCcc-hHHHHHHHHHHHH
Q 036040 261 AFGFLYAAQDQDKSKADPGYPAGIG-IKNTLFLLAAVNV 298 (338)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 298 (338)
|.+.+.+.+ ..| |+..++..+++++
T Consensus 366 p~~~g~l~~-------------~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 366 PYIAAALVA-------------MTGDWYAIGYYLAALAL 391 (394)
T ss_pred HHHHHHHHH-------------HcCcchhHHHHHHHHHH
Confidence 999999983 445 6666655554443
No 32
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.67 E-value=7.9e-15 Score=133.11 Aligned_cols=183 Identities=11% Similarity=-0.019 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHH
Q 036040 102 LLGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180 (338)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 180 (338)
++...+..++....++....|+|.++++ .|++..+ +.....+..++.+++.+++|+++||+++|+..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~------------~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~ 330 (465)
T TIGR00894 263 VWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKE------------NGLLSSLPYLFAWLCSIFAGYLADFLKSSKTL 330 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHH------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3445566667777788888899999876 5666644 44466677888889999999999998754211
Q ss_pred H------HHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHH
Q 036040 181 L------IGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGK 254 (338)
Q Consensus 181 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~ 254 (338)
. ....+..++..+..+...+. . ......++...+.++...+..+..+....|..|. .+|.+.|+.++.+.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~ 406 (465)
T TIGR00894 331 SLTAARKIFNGIGGLGPGIFAYALPYL--S-AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGF 406 (465)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHc--C-CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHH
Confidence 0 11111111111111111010 0 1112222222222222333333444555677665 88999999999999
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccC
Q 036040 255 AGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEP 310 (338)
Q Consensus 255 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 310 (338)
++++++|.+.+.+.+.. ...+|..+|.+.++..+++.++....++.
T Consensus 407 l~~~i~p~l~g~~~~~~----------~~~~~~~~f~~~~~~~~i~~i~~~~~~~~ 452 (465)
T TIGR00894 407 IGGLIASTLAGNILSQD----------SKNVWLIVFLIMAFVNILCVIFYLIFGSA 452 (465)
T ss_pred HHHHHHHHhhheeeCCC----------CchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence 99999999999876310 11358889999888888887776654433
No 33
>TIGR00895 2A0115 benzoate transport.
Probab=99.66 E-value=3.1e-15 Score=132.76 Aligned_cols=145 Identities=19% Similarity=0.237 Sum_probs=97.1
Q ss_pred HHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHH
Q 036040 103 LGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLI 182 (338)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~ 182 (338)
+...+..++....++....+.|.+.++.|+++.+ .........++.+++.++.++++||+|||+....
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 320 (398)
T TIGR00895 253 VLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSL------------AATGGALFNFGGVIGSIIFGWLADRLGPRVTALL 320 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 3334444455566777778888777777777654 3346666778888999999999999999954443
Q ss_pred HHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHH
Q 036040 183 GFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAF 262 (338)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~ 262 (338)
..+.++...++..... + ........++.+++..+..+..+++++|.+|++.|+++.|+.+....+|..++|.
T Consensus 321 -~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~ 392 (398)
T TIGR00895 321 -LLLGAVFAVLVGSTLF------S-PTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPI 392 (398)
T ss_pred -HHHHHHHHHHHHHHhh------C-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333222110 1 2222223333333334445667788999999999999999999999999999999
Q ss_pred HHHHh
Q 036040 263 GFLYA 267 (338)
Q Consensus 263 ~~~~~ 267 (338)
+.+.+
T Consensus 393 ~~G~l 397 (398)
T TIGR00895 393 LAGYL 397 (398)
T ss_pred hHHhc
Confidence 98865
No 34
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.65 E-value=1.2e-15 Score=137.33 Aligned_cols=178 Identities=13% Similarity=0.154 Sum_probs=108.8
Q ss_pred HHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHH
Q 036040 105 TASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIG 183 (338)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~ 183 (338)
..+..++.....++...+.|.++++ .|+++.+ +.....+..++.+++.+++|+++||+++++....+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~ 323 (438)
T TIGR00712 256 IAIANVFVYLLRYGVLDWSPTYLKEVKHFALDK------------SSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATG 323 (438)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHccCCChhh------------HHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHH
Confidence 3334444455667788899999987 4766654 33455667778888999999999999644322223
Q ss_pred HHHHHHHHHH-HHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHH-HHHH
Q 036040 184 FFFMTVFMLA-LAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGA-IIGA 261 (338)
Q Consensus 184 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~-~~~~ 261 (338)
.....+..+. +.+.. ....+... .....+..++...+..........|.+|++.|++++|+.+..+++++ .++|
T Consensus 324 ~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp 399 (438)
T TIGR00712 324 VFFMTLVTIAVIVYWM---NPAGNPLV-DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAAS 399 (438)
T ss_pred HHHHHHHHHHHHHHHh---cCCCchHH-HHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcc
Confidence 2222111111 11111 00111111 11112222222222222222346799999999999999999888875 6899
Q ss_pred HHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCC
Q 036040 262 FGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPN 311 (338)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~ 311 (338)
.+.+.+. +..|+...+.+.++..+++.+..+ .+||.|
T Consensus 400 ~l~G~l~-------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 400 AIVGYTV-------------DFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred hhHHHHH-------------HhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999998 566888898888877777777666 667755
No 35
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.65 E-value=2.7e-15 Score=132.97 Aligned_cols=181 Identities=13% Similarity=0.062 Sum_probs=134.9
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchH
Q 036040 98 HGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRV 177 (338)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr 177 (338)
.|+..+...+..++.....|......|.+.+++|+++.+ .........++..++.++.|.++||+|||
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~------------~g~~~~~~~~~~~~~~~~~g~l~Dr~grr 85 (394)
T PRK10213 18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGV------------AGQSVTVTAFVAMFASLFITQTIQATDRR 85 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHhcccCcH
Confidence 444444455554544455556666788888998988866 33355666777788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHH
Q 036040 178 TIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGA 257 (338)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~ 257 (338)
++++.+.++.+++.++..+... ...+....+..+.......+....++.|.+|++.|+++.++......+|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~ 157 (394)
T PRK10213 86 YVVILFAVLLTLSCLLVSFANS--------FSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIAL 157 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHCh--------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHH
Confidence 9999999888887776655431 33444455555555555566677788999999999999999999999999
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCC
Q 036040 258 IIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPN 311 (338)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~ 311 (338)
.++|.+.+.+. +..||+..|++.+++++++.+... ..||++
T Consensus 158 ~ig~~l~~~l~-------------~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~ 199 (394)
T PRK10213 158 VIAAPLGSFLG-------------ELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP 199 (394)
T ss_pred HHHHHHHHHHH-------------hhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 99999999997 578999999988877766555544 467653
No 36
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.65 E-value=3e-15 Score=133.29 Aligned_cols=184 Identities=17% Similarity=0.151 Sum_probs=137.1
Q ss_pred hhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhch
Q 036040 97 RHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGR 176 (338)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr 176 (338)
++++......+.++......+......|.+.+++|+++.+ .........++..++.++.|+++||+||
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~------------~g~~~~~~~~~~~~~~~~~G~l~Dr~g~ 76 (405)
T TIGR00891 9 AQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVD------------AASLISAALISRWFGALMFGLWGDRYGR 76 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh------------HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444566677777777778888888889988888888766 3446677788888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHH
Q 036040 177 VTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAG 256 (338)
Q Consensus 177 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g 256 (338)
|+.++.+.++.+++.++..+... ...+....++.+.+.....+...+++.|.+|++.|+++.++.+....+|
T Consensus 77 r~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g 148 (405)
T TIGR00891 77 RLPMVTSIVLFSAGTLACGFAPG--------YITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVG 148 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHH
Confidence 99999988877777766655432 3334444455555555555667778899999999999999999999999
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCC
Q 036040 257 AIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPN 311 (338)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 311 (338)
.++++.+.+.+.+. ...+|+..|.+.++..++..+.....||++
T Consensus 149 ~~~~~~l~~~l~~~-----------~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~ 192 (405)
T TIGR00891 149 AVVAAQVYSLVVPV-----------WGDGWRALFFISILPIIFALWLRKNIPEAE 192 (405)
T ss_pred HHHHHHHHHHHHHh-----------cCccHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 99999998888631 112499988876665555544444667764
No 37
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.64 E-value=3.2e-15 Score=134.35 Aligned_cols=177 Identities=11% Similarity=0.014 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHH
Q 036040 101 HLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 180 (338)
......+.+++.....+....+.|.+.+++|+++.+ .........++..++.++.|+++||+|||+++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------------~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~ 91 (434)
T PRK11663 24 ILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSD------------IGLLATLFYITYGVSKFVSGIVSDRSNARYFM 91 (434)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHH------------HHHHHHHHHHHHHHHHhhhhHHHhhcCCchhH
Confidence 344455555666666667788899999998888755 34466777888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHH
Q 036040 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIG 260 (338)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~ 260 (338)
.++.++.+++.++...... ...+.+..++.+...+...+....++.|.+|++.|++++|+.+....+|..++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~ 163 (434)
T PRK11663 92 GIGLIATGIINILFGFSSS--------LWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALI 163 (434)
T ss_pred HHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888888776665442 22233333333333333345666788999999999999999999999999999
Q ss_pred HHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccC
Q 036040 261 AFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEP 310 (338)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~ 310 (338)
+.+.+.+. +..||+..|++.+++.++..+... +++|+
T Consensus 164 ~~~~~~l~-------------~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 164 PLVVGAIA-------------LHYGWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHHHHHHH-------------HcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999887 578999999888776655544333 55654
No 38
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.64 E-value=4.8e-15 Score=132.25 Aligned_cols=180 Identities=9% Similarity=0.038 Sum_probs=116.9
Q ss_pred hhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhh
Q 036040 119 QNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPY 198 (338)
Q Consensus 119 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~ 198 (338)
...+.+.++++.|.++... .+-..........+..+..+++.++.|+++||+|||+++..+.++.++...++....
T Consensus 227 ~~~~~~~~~~~~g~~~~~~----~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~ 302 (418)
T TIGR00889 227 TNIFGNGFLHEFGRNPEFA----DSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGD 302 (418)
T ss_pred HHHhHHHHHHHhccccccc----chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC
Confidence 4456677777777655321 000011234456666777788889999999999999999999887777655554421
Q ss_pred hhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHH-HHHHHHHHHHHHHHHHhhhccccCCCC
Q 036040 199 HHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISA-AAGKAGAIIGAFGFLYAAQDQDKSKAD 277 (338)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~ 277 (338)
. .......+.+..++.+.......+....++.|.+|++.|++++|+.+ ....+|..++|.+.+.+.+....
T Consensus 303 ~----~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~---- 374 (418)
T TIGR00889 303 P----EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFA---- 374 (418)
T ss_pred c----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc----
Confidence 0 00011222222333332222333455567899999999999999997 56778999999999999853210
Q ss_pred CCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCCC
Q 036040 278 PGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNGR 313 (338)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~ 313 (338)
...+||+..|.+.+++.+++.++.+ +++|+.+.
T Consensus 375 ---~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 375 ---YGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred ---ccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 0125799999888888777777666 77876543
No 39
>PRK03545 putative arabinose transporter; Provisional
Probab=99.63 E-value=4.2e-15 Score=131.82 Aligned_cols=173 Identities=13% Similarity=0.088 Sum_probs=127.2
Q ss_pred HHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHH
Q 036040 106 ASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFF 185 (338)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~ 185 (338)
.+..+......+......|.+.+++|.++.+ .........++..++.+..|.++||+|||+++..+.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~------------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 82 (390)
T PRK03545 15 ALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQ------------VGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFV 82 (390)
T ss_pred HHHHHHHHhHHHHHHcchHHHHhHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 3333333344444556678898998888765 3345556677777788889999999999999999988
Q ss_pred HHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 036040 186 FMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFL 265 (338)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~ 265 (338)
+.+++.+...+... ...+.+..+..+.......+...+++.|.+|++.|++++|+......+|..++|.+.+
T Consensus 83 ~~~~~~~~~~~~~~--------~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~ 154 (390)
T PRK03545 83 LFIASHVLSALAWN--------FTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGR 154 (390)
T ss_pred HHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 88888777665542 3334444444444444444556678899999999999999999999999999999999
Q ss_pred HhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCC
Q 036040 266 YAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPN 311 (338)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~ 311 (338)
.+. +..||+..|++.++++++..+..+ .+||.+
T Consensus 155 ~l~-------------~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~ 188 (390)
T PRK03545 155 VIG-------------QYLGWRTTFLAIGGGALITLLLLIKLLPLLP 188 (390)
T ss_pred HHH-------------HHhcHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 886 567999999998888777766555 566643
No 40
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.63 E-value=9.6e-16 Score=129.94 Aligned_cols=185 Identities=10% Similarity=0.031 Sum_probs=149.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHH
Q 036040 92 KMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILI 171 (338)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 171 (338)
+...|.+++.++.+++.+.+.++.-..+..-.|.+.++.|++.++. +.+.+...+..-++-++.|.++
T Consensus 21 ~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~l------------G~i~s~f~i~YG~sKf~~G~~s 88 (448)
T COG2271 21 KTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQL------------GILGSAFSITYGVSKFVMGVLS 88 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHH------------HHHHHHHHHHHHHHHHHhhhhc
Confidence 3445555667788888888888888889999999999988888773 3366777788888999999999
Q ss_pred HhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHH
Q 036040 172 DIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAA 251 (338)
Q Consensus 172 d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~ 251 (338)
||.+.|..+-.++++++++++++++..+ ...+.++..+.+.+.+.-.|.+...++.++|++.||+..++-++
T Consensus 89 Dr~npr~fm~~gLilsai~nil~Gfs~s--------~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~ 160 (448)
T COG2271 89 DRSNPRYFMAFGLILSAIVNILFGFSPS--------LFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNT 160 (448)
T ss_pred ccCCCceeehHHHHHHHHHHHHHhhhhH--------HHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehh
Confidence 9999999999999999999999988663 33444444444544444457777889999999999999999999
Q ss_pred HHHHHHHHHHHHH--HHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-eccc
Q 036040 252 AGKAGAIIGAFGF--LYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPE 309 (338)
Q Consensus 252 ~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e 309 (338)
..++|+.+.|.+. +.+. ...+|+..|++.++++++..++.+ .+++
T Consensus 161 shNiGGal~~~~~~la~~~-------------~~~~w~~~f~~pgiiaiival~~~~~~rd 208 (448)
T COG2271 161 SHNIGGALAPLVALLAFFA-------------FHGGWRAAFYFPGIIAIIVALILLFLLRD 208 (448)
T ss_pred hhhcccchHHHHHHHHHHH-------------hccchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999998 7776 567999999999988888777766 5544
No 41
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.62 E-value=1.3e-14 Score=127.86 Aligned_cols=156 Identities=15% Similarity=0.096 Sum_probs=101.0
Q ss_pred hccHHHHHH-HccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhh
Q 036040 120 NLFQKEIFT-AVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPY 198 (338)
Q Consensus 120 ~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~ 198 (338)
..+.|.+++ +.|.++.+ .........+..+++.+++|++.||+|||+.+..+.++..+.........
T Consensus 219 ~~~~~~~~~~~~g~~~~~------------~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~ 286 (375)
T TIGR00899 219 IINMPLLIIHELGLPDKL------------AGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADN 286 (375)
T ss_pred HhhhHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 445566654 45666543 22233344445566778899999999999988877655444433332221
Q ss_pred hhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 036040 199 HHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADP 278 (338)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 278 (338)
+ ........++.++......+....+..|..|++ |++++++.+...++|..++|.+.+.+.
T Consensus 287 -------~-~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~---------- 347 (375)
T TIGR00899 287 -------S-LWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILA---------- 347 (375)
T ss_pred -------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 1 222222222222222223344556778888865 569999999999999999999999987
Q ss_pred CCCCCcchHHHHHHHHHHHHHhHhheeeccc
Q 036040 279 GYPAGIGIKNTLFLLAAVNVLGLLFTFLVPE 309 (338)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 309 (338)
+..|++..+.+.+++.+++.+...+++|
T Consensus 348 ---~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 348 ---ERWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred ---HhccchhHHHHHHHHHHHHHHHHheecC
Confidence 5678999998888888877776655543
No 42
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.62 E-value=6.3e-15 Score=126.28 Aligned_cols=175 Identities=17% Similarity=0.122 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHH
Q 036040 101 HLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 180 (338)
.++.+.+..|.....-+.....+|.+.+++|.+... ++...+.+.++..+++++...++||+.||+++
T Consensus 14 ~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~------------aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lL 81 (394)
T COG2814 14 ALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGA------------AGQLITAYALGVALGAPLLALLTGRLERRRLL 81 (394)
T ss_pred HHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 456677777888888888999999999999988865 56688888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHH
Q 036040 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIG 260 (338)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~ 260 (338)
+..+.+..++.++.++..+ ...+.+..++.+...+..+++..++..++.|+++|++++++..+...++.++|
T Consensus 82 l~~l~lFi~~n~l~alAp~--------f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~G 153 (394)
T COG2814 82 LGLLALFIVSNLLSALAPS--------FAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLG 153 (394)
T ss_pred HHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHh
Confidence 9999999999999988774 44566667777777777788888999999999999999999999999999999
Q ss_pred HHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecc
Q 036040 261 AFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVP 308 (338)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 308 (338)
..+..++- +.+|||.+|++.+++++++++..+ .+|
T Consensus 154 vPLGt~ig-------------~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 154 VPLGTFLG-------------QLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred ccHHHHHH-------------HHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999997 689999999999999999988887 888
No 43
>TIGR00895 2A0115 benzoate transport.
Probab=99.62 E-value=3.2e-15 Score=132.69 Aligned_cols=178 Identities=20% Similarity=0.212 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHH
Q 036040 101 HLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 180 (338)
..+...+..+......+....+.|.+.++.|+++.+ .........++.+++.++.|+++||+|||+.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~ 85 (398)
T TIGR00895 18 AIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQ------------LGFLFSAGLIGMAFGALFFGPLADRIGRKRVL 85 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHH------------HHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHH
Confidence 344444455555556666777888888888877654 33456667778888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHH
Q 036040 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIG 260 (338)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~ 260 (338)
..+.++..++.++..... + ...+.+..++.+++.....+...+++.|.+|++.|+++.++......+|..++
T Consensus 86 ~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 157 (398)
T TIGR00895 86 LWSILLFSVFTLLCALAT-------N-VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVG 157 (398)
T ss_pred HHHHHHHHHHHHHHHHcc-------c-hHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHH
Confidence 998877777766655433 1 33344444455555555567778899999999999999999999999999999
Q ss_pred HHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCC
Q 036040 261 AFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPN 311 (338)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~ 311 (338)
+.+.+.+. +..+|+..+++.+++.++..+... ++||+.
T Consensus 158 ~~~~~~l~-------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 158 GFLAGWLI-------------PVFGWRSLFYVGGIAPLLLLLLLMRFLPESI 196 (398)
T ss_pred HHHHHHHh-------------hcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence 99999887 567899888877655555544444 677764
No 44
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.62 E-value=5.8e-15 Score=131.63 Aligned_cols=182 Identities=18% Similarity=0.162 Sum_probs=135.7
Q ss_pred hhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhch
Q 036040 97 RHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGR 176 (338)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr 176 (338)
+++..+....+..+......+......|.+.+++|+++.+ .........++.+++.++.|+++||+||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------------~g~~~~~~~~~~~~~~~~~g~l~dr~g~ 79 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQ------------MGWAFSAGILGLLPGALLGGRLADRIGR 79 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4444566666666777777777888889999998887755 3446677788888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHH
Q 036040 177 VTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAG 256 (338)
Q Consensus 177 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g 256 (338)
|+++..+.++..++.++..+.. + ...+.+..++.+.+.....+...+++.|.+|++.|++++++.+....+|
T Consensus 80 r~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 151 (406)
T PRK11551 80 KRILIVSVALFGLFSLATAQAW-------D-FPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFG 151 (406)
T ss_pred chhHHHHHHHHHHHHHHHHHhc-------c-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 9999998877776665555433 1 3333444444444444445666778999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCC
Q 036040 257 AIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPN 311 (338)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~ 311 (338)
..+++.+...+. +..+|+..|++.+++.++..+... ++||+.
T Consensus 152 ~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 194 (406)
T PRK11551 152 GALASVIGVLAA-------------GDAAWRHIFYVGGVGPLLLVPLLMRWLPESR 194 (406)
T ss_pred HHHHHHHHHHHc-------------cccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 999998887775 577899999887766665555444 677754
No 45
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.62 E-value=1.5e-14 Score=128.38 Aligned_cols=160 Identities=9% Similarity=-0.005 Sum_probs=101.2
Q ss_pred hhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 036040 116 YFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLAL 194 (338)
Q Consensus 116 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 194 (338)
++....+.|.++++ .|+++.+ .........++.+++.+++|+++||+|||+.+..+.....+.....
T Consensus 232 ~~~~~~~~p~~l~~~~~~~~~~------------~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~ 299 (393)
T PRK15011 232 NSLYIINMPLFIINELHLPEKL------------AGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGM 299 (393)
T ss_pred HHHHHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 34445577877754 5665543 2223344455667788999999999999998776655444333222
Q ss_pred HhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 036040 195 AIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKS 274 (338)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 274 (338)
.... +...... .....+.......+....+.+|.+|++ |+++.++.+...++|..+++.+.+.+.
T Consensus 300 ~~~~-------~~~~~l~-~~~l~~~~~g~~~~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~------ 364 (393)
T PRK15011 300 LMAH-------SPAILLG-LQLLNAIYIGILGGIGMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVA------ 364 (393)
T ss_pred HHHh-------hHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 2111 1122221 111111111111122334568888864 899999999989999999999999997
Q ss_pred CCCCCCCCCcchHHHHHHHHHHHHHhHhheeeccc
Q 036040 275 KADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPE 309 (338)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 309 (338)
+..||+..+.+.+++.+++++..++.||
T Consensus 365 -------~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 365 -------EIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred -------HHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5678999988888887777776666665
No 46
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.61 E-value=1e-14 Score=129.01 Aligned_cols=172 Identities=16% Similarity=0.133 Sum_probs=128.7
Q ss_pred HHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHH
Q 036040 109 WLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMT 188 (338)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~ 188 (338)
.+.............|.+.+++|.++.+ .........++..++.++.|+++||+|||+.+..+.++.+
T Consensus 14 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~------------~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~ 81 (385)
T TIGR00710 14 SILGPLGIDMYLPAFPEIAADLSTPASI------------VQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFA 81 (385)
T ss_pred HHHHHHHHHHhcccHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHH
Confidence 3444445555566778888888887755 4446677788888999999999999999999999888777
Q ss_pred HHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 036040 189 VFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAA 268 (338)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~ 268 (338)
++.+....... ...+....++.+.+.....+....++.|.+|++.|+++.++.+....+|..+++.+.+.+.
T Consensus 82 ~~~~~~~~~~~--------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 153 (385)
T TIGR00710 82 LSSLGLALSNN--------IETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYIL 153 (385)
T ss_pred HHHHHHHHHcc--------HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766655431 2333334444444444445666788899999999999999999999999999999999887
Q ss_pred hccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCCC
Q 036040 269 QDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNGR 313 (338)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~ 313 (338)
+..+|+..+++.+++.++..+..+ +.||++.+
T Consensus 154 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (385)
T TIGR00710 154 -------------VWLSWHAIFAFLSLAGILLSALIFFILPETLPY 186 (385)
T ss_pred -------------HHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 567999999888877777666555 66776543
No 47
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.61 E-value=1.1e-14 Score=132.44 Aligned_cols=163 Identities=13% Similarity=0.091 Sum_probs=104.2
Q ss_pred hccHHHHH-HHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhh
Q 036040 120 NLFQKEIF-TAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPY 198 (338)
Q Consensus 120 ~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~ 198 (338)
..+.+.++ ++.|+++.+ .+........++.++|.+++|+++||+|+|+.++++.++.++..+++....
T Consensus 242 ~~~~~~~l~~~~G~s~~~-----------~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~ 310 (491)
T PRK11010 242 MSLTTTFLIRGVGFDAGE-----------VGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLS 310 (491)
T ss_pred HHHHHHHHHHhcCCCHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555554 456777654 222223455678889999999999999998887766554444333222111
Q ss_pred hhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 036040 199 HHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADP 278 (338)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 278 (338)
. . ..+.........+.....+.+ .+..+++..+..|++.+++..|+.+....+|..+++.+.+.+.
T Consensus 311 -~-~-~~~~~~l~~~~~l~~~~~g~~-~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~---------- 376 (491)
T PRK11010 311 -I-T-DKNLYSMGAAVFFENLCGGMG-TAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFV---------- 376 (491)
T ss_pred -h-c-cccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 0 0 111111111111111111111 1334577788999999999999999999999998888999988
Q ss_pred CCCCCcchHHHHHHHHHHHHHhHhheeecccC
Q 036040 279 GYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEP 310 (338)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 310 (338)
+..||+..|.+.+++++++.+...+++++
T Consensus 377 ---~~~G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 377 ---EAHGWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred ---HHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56789999998888888887776655554
No 48
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.60 E-value=4.6e-14 Score=125.18 Aligned_cols=176 Identities=9% Similarity=-0.021 Sum_probs=120.5
Q ss_pred HHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHH
Q 036040 107 STWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFF 186 (338)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~ 186 (338)
+..++....+++...+.|.++++.|++..+ +.....+..++.+++.++.+++.||+|||+.++.+..+
T Consensus 212 ~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~------------ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l 279 (393)
T PRK09705 212 VYFGLINGGYASLIAWLPAFYIEIGASAQY------------SGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVL 279 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhh------------hhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 334445567778888999999888877655 33466777888899999999999999999988887666
Q ss_pred HHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccC-CccchhhhHHHHHHHHHHHHHHHHHHHH
Q 036040 187 MTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIF-PARFRSTCHGISAAAGKAGAIIGAFGFL 265 (338)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~g~~~~~~~~~ 265 (338)
..++..++..... +... ... ++.+....+..+.......+.+ |++.|++.+|+.+..+.+++.++|.+.+
T Consensus 280 ~~~~~~~~~~~~~------~~~~-~~~--~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G 350 (393)
T PRK09705 280 QLVGFCGFIWLPL------QLPV-LWA--MVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSG 350 (393)
T ss_pred HHHHHHHHHHccc------hHHH-HHH--HHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555544332210 1111 111 1222222333344444455666 4678999999999999999999999999
Q ss_pred HhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCCCCh
Q 036040 266 YAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNGRSL 315 (338)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~ 315 (338)
++.+ ...++...|.+.++++++..+... +.||++++..
T Consensus 351 ~l~~------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK09705 351 VLRS------------ISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW 389 (393)
T ss_pred HHHH------------HhCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 9984 222477778777777777666655 7888877654
No 49
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.60 E-value=1.6e-14 Score=131.89 Aligned_cols=180 Identities=13% Similarity=0.044 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHH
Q 036040 99 GLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVT 178 (338)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~ 178 (338)
+..+..+.+..++..........-.|.+.+++|.+..+ ..+....+.++...+.+.+|+++||+|||+
T Consensus 5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~------------~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~ 72 (495)
T PRK14995 5 WLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNE------------LLWIIDIYSLVMAGMVLPMGALGDRIGFKR 72 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhH------------HHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 34556666677777777777788899999998887765 333555566677778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccC-CccchhhhHHHHHHHHHHHH
Q 036040 179 IQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIF-PARFRSTCHGISAAAGKAGA 257 (338)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~g~ 257 (338)
+++.+.++..++.++.+.... ...+++...+.+.+..+..+.....+.+.+ |++.|+++.|+......+|.
T Consensus 73 ~l~~~~~~~~~~~~~~~~a~~--------~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~ 144 (495)
T PRK14995 73 LLMLGGTLFGLASLAAAFSPT--------ASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGA 144 (495)
T ss_pred HHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 999999888888877776542 334444444455444444444444455554 78999999999999999999
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCC
Q 036040 258 IIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPN 311 (338)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~ 311 (338)
.++|.+.+.+. +..+|++.|++...++++..++.. ++|+.+
T Consensus 145 ~~gp~lgg~l~-------------~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 145 AFGPLVGGILL-------------EHFYWGSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred HHHHHHHHHhh-------------ccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999997 678999999988777777666655 667654
No 50
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.59 E-value=4.9e-14 Score=126.61 Aligned_cols=200 Identities=13% Similarity=0.022 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHH
Q 036040 101 HLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 180 (338)
.++...+.++.............|.+.++++-+... . ..............++..+|++++|+++||+|||+.+
T Consensus 23 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l 96 (432)
T PRK10406 23 AIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNT----T--TQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSM 96 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc----h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 344444556666666666666677777775421111 0 0011122233455677779999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHH
Q 036040 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIG 260 (338)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~ 260 (338)
..+.++.+++.++.++...+..........+++..++.+.+.++..+...++++|.+|++.|++..++.......|..++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~ 176 (432)
T PRK10406 97 LISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLA 176 (432)
T ss_pred HHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHH
Confidence 99999998888887765422100001123455566666766667778888999999999999999998877777777777
Q ss_pred HHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCC
Q 036040 261 AFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPN 311 (338)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 311 (338)
+.+...+...... .....+|||.+|++.++++++...+...+||++
T Consensus 177 ~~~~~~~~~~~~~-----~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~ 222 (432)
T PRK10406 177 LLVVVVLQQTLED-----AELREWGWRIPFALGAVLAVVALWLRRQLDETS 222 (432)
T ss_pred HHHHHHHHHhCCH-----HHHhccchHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 7665444311000 000257999999987777766654433677764
No 51
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.59 E-value=1.5e-14 Score=129.77 Aligned_cols=164 Identities=13% Similarity=0.088 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHH
Q 036040 101 HLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 180 (338)
......+.++......+......|.+.+++|+++.+ .........++.+++.++.|+++||+|||+++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~------------~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l 86 (426)
T PRK12307 19 ALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDME------------GAFLATAAFIGRPFGGALFGLLADKFGRKPLM 86 (426)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH
Confidence 345555566666666777777788888888888755 34466677888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHH
Q 036040 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIG 260 (338)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~ 260 (338)
.++.+..+++.++..+... ...+.+..++.+.+..+..+....++.|.+|++.|+++.++......+|.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~--------~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~ 158 (426)
T PRK12307 87 MWSIVAYSVGTGLSGLASG--------VIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIA 158 (426)
T ss_pred HHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHH
Confidence 9998888888777666542 33444445555555555566677788999999999999999999999999999
Q ss_pred HHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHH
Q 036040 261 AFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVN 297 (338)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (338)
+.+.+.+. +..+|+..|++.+...
T Consensus 159 ~~l~~~l~-------------~~~~w~~~f~i~~~~~ 182 (426)
T PRK12307 159 AYFMPSFA-------------EAYGWRAAFFVGLLPV 182 (426)
T ss_pred HHHHHHHc-------------ccCCHHHHHHHHHHHH
Confidence 98888876 5679999988654433
No 52
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.59 E-value=2.3e-14 Score=130.06 Aligned_cols=164 Identities=15% Similarity=0.080 Sum_probs=95.7
Q ss_pred HHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHH-------HH
Q 036040 109 WLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVT-------IQ 180 (338)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~-------~~ 180 (338)
+++.....+....+.|.++.+ .|+++.. +.....+..++.+++.+++|+++||++||+ ..
T Consensus 261 ~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------------a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~ 328 (476)
T PLN00028 261 YGYSFGVELTMDNIIAEYFYDRFGLSLET------------AGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWAL 328 (476)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhcCCCHHH------------HHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHH
Confidence 333444445566678887755 4666543 445677778888899999999999998762 22
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHH
Q 036040 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIG 260 (338)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~ 260 (338)
....++.++..+++.... + ....+...++.++......+..+++..++.| +.|+++.|+.+..+++|++++
T Consensus 329 ~~~~~l~~i~~~~~~~~~-------~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~ 399 (476)
T PLN00028 329 WIVQTLGGVFCIWLGRAN-------S-LGAAIVVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLT 399 (476)
T ss_pred HHHHHHHHHHHHHhcccc-------h-HHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHH
Confidence 222222222222111111 1 1111111122222222222345566677654 689999999988887888877
Q ss_pred HHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeec
Q 036040 261 AFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLV 307 (338)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (338)
+.+.. .. ...+|...|++.+++.+++.++.+++
T Consensus 400 ~~l~~-~~-------------~~~~y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 400 QLLFF-TG-------------SSYSTETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred HHHHH-hc-------------CCccHhhHHHHHHHHHHHHHHHHHhe
Confidence 76654 11 34578889988887877777666544
No 53
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.58 E-value=1.2e-14 Score=128.73 Aligned_cols=166 Identities=15% Similarity=0.096 Sum_probs=127.1
Q ss_pred HhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 036040 114 VSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLA 193 (338)
Q Consensus 114 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 193 (338)
...+......|.+.+++|+++.+ .........++..++.++.|+++||+|||+.+..+.++.+++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~g~s~~~------------~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 75 (399)
T TIGR00893 8 LDRANLSFAAPMLQEDLGLSAAQ------------YGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGL 75 (399)
T ss_pred HHHHhhhHhHHHHHHhhCCChhh------------HHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHH
Confidence 34455566677777888887765 344677788888899999999999999999999988887777776
Q ss_pred HHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 036040 194 LAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDK 273 (338)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 273 (338)
..+... ...+.+..++.+.+.....+....++.|.+|++.|++++++......+|..+++.+.+.+.
T Consensus 76 ~~~~~~--------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~----- 142 (399)
T TIGR00893 76 QAFAGA--------YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWIL----- 142 (399)
T ss_pred HHHHcC--------HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHH-----
Confidence 665442 3334444455555555556677788999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCC
Q 036040 274 SKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNG 312 (338)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~ 312 (338)
+..+|+..|.+.+++.++..+..+ +.||++.
T Consensus 143 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (399)
T TIGR00893 143 --------IHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ 174 (399)
T ss_pred --------HhCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence 567899999888877776666555 5666543
No 54
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.58 E-value=1.1e-14 Score=130.03 Aligned_cols=226 Identities=9% Similarity=0.047 Sum_probs=123.7
Q ss_pred CchhhhhhhHHHHH-HHHHHHhccCCch--hhhhhcCChhhHHHHHHHhhhhcCCCCchhHHHHHhhhhccccccCCCCC
Q 036040 1 WRIVLMFGALPIAF-TYYWRMKMPETPH--YTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQVQAVDQRNDVVCGAADH 77 (338)
Q Consensus 1 WR~~f~~~~i~~~i-~~~~~~~lpEsp~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (338)
|||+|++.++..++ .++.++++|+.|. |. +. + +|..-..++.++.+. ...
T Consensus 205 W~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~f-l~-~--~ek~~~~~~~~~~~~-----------------------~~~ 257 (495)
T KOG2533|consen 205 WRWLFIIEGVITLVLGIVVFFFLPDNPSKAWF-LT-D--EEKELVVERLRESPS-----------------------GGI 257 (495)
T ss_pred ceeehhHHHHHHHHHHheEEEEecCChhhccc-cc-h--HHHHHHHHHHHhccC-----------------------CCc
Confidence 99999998877776 5566778999998 32 21 1 111111111111110 000
Q ss_pred CCcccccchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHH
Q 036040 78 DDDDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVA 156 (338)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
+++.++..+++.++.+ .++...+++++.....|++..|+|.++++ .|++..+.+. +.+..
T Consensus 258 ~~~~~~~~~~~a~~dp-------~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~------------ls~~~ 318 (495)
T KOG2533|consen 258 ENKFKWKGFKEALKDP-------GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANL------------LSTPY 318 (495)
T ss_pred ccccCHHHHHHHHhch-------hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhcc------------ccchH
Confidence 0112233333444333 34667888888889999999999999999 4577765333 88889
Q ss_pred HhccchhHHHHHHHHHh----hchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeee
Q 036040 157 LCGLIPGYWITVILIDI----IGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIV 232 (338)
Q Consensus 157 ~~~~~~~~~~~g~l~d~----~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (338)
.++++++.+++|+++|| ..+|........+..+...+...... .... .....+..........+.....
T Consensus 319 ~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~w 391 (495)
T KOG2533|consen 319 DVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAA------VLPG-AYGAFLIGPYGLIATAIIALSW 391 (495)
T ss_pred HhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhc------cchH-HhHHHHhcchhhHHHHHHHHhh
Confidence 99999999999999999 56666655554443333211111110 0111 1111111111122223344455
Q ss_pred ecccCCccchhh-hHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHH
Q 036040 233 PAEIFPARFRST-CHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLF 291 (338)
Q Consensus 233 ~~e~~p~~~R~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (338)
+++....+.|.. ..+........++.+++.+...... ..++|...|.
T Consensus 392 ~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~a------------p~y~~~~~f~ 439 (495)
T KOG2533|consen 392 TSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDA------------PRYGWGAVFY 439 (495)
T ss_pred ccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccC------------cchhhhhHHH
Confidence 666665555444 3444444444555555555444331 4467777773
No 55
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.58 E-value=2.4e-14 Score=127.05 Aligned_cols=176 Identities=12% Similarity=0.061 Sum_probs=127.3
Q ss_pred HHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHH
Q 036040 104 GTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIG 183 (338)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~ 183 (338)
+..+..+....+........|.+.+++|.++.+ .........++..++.++.|+++||+|||+.++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~------------~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~ 74 (392)
T PRK10473 7 CSFALVLLYPAGIDMYLVGLPRIAADLNASEAQ------------LHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPG 74 (392)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHH
Confidence 334444444455555557788888888877654 33456667778888899999999999999999998
Q ss_pred HHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHH
Q 036040 184 FFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFG 263 (338)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~ 263 (338)
.+...++..+...... ........++.+.......+..+.++.|.+|++.|+++.++.+....++..++|.+
T Consensus 75 ~~~~~i~~~~~~~~~~--------~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i 146 (392)
T PRK10473 75 AALFIIASLLCSLAET--------SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVL 146 (392)
T ss_pred HHHHHHHHHHHHHhCc--------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777777666654331 22233333344443333445567788999999999999999999999999999999
Q ss_pred HHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCC
Q 036040 264 FLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNG 312 (338)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~ 312 (338)
.+.+. +..+|+..+++.+++.++..++.+ ++||++.
T Consensus 147 ~~~l~-------------~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 183 (392)
T PRK10473 147 GHLIM-------------LKFPWQSLFYTMAAMGILVLLLSLFILKETRP 183 (392)
T ss_pred HHHHH-------------hCcChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 88876 567999999888877777666655 6677654
No 56
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.58 E-value=4.5e-14 Score=128.20 Aligned_cols=184 Identities=10% Similarity=0.058 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHH
Q 036040 100 LHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTI 179 (338)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~ 179 (338)
+.+......++......+....+.|.+.+++|++..+ .........++..++.+++|+++||+|||++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~------------~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~ 103 (476)
T PLN00028 36 RAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSD------------IGNAGIASVSGSIFSRLAMGPVCDLYGPRYG 103 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHH
Confidence 3445555555555666677777888888888887755 2234566677788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHH
Q 036040 180 QLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAII 259 (338)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~ 259 (338)
+..+.++.+++.++.++... ...+.+..++.+++..+.. ....+++|.+|++.|++++|+.+...++|..+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~s--------~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~ 174 (476)
T PLN00028 104 SAFLLMLTAPAVFCMSLVSS--------ATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGV 174 (476)
T ss_pred HHHHHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHH
Confidence 99888777777666655432 2223333333333333322 23346789999999999999999888888888
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecc
Q 036040 260 GAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVP 308 (338)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (338)
++.+.+.+....... +..+..||+..|++.++++++..+..++++
T Consensus 175 ~~~~~~~i~~~~~~~----~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~ 219 (476)
T PLN00028 175 TQLLMPLVFPLIKDA----GAPSFTAWRIAFFVPGLLHIIMGILVLTLG 219 (476)
T ss_pred HHHHHHHHHHHHHhc----CCcchhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 877776553211000 000235899999998888777666555443
No 57
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.58 E-value=1.1e-14 Score=132.97 Aligned_cols=176 Identities=11% Similarity=0.067 Sum_probs=135.4
Q ss_pred HHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHH
Q 036040 103 LGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLI 182 (338)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~ 182 (338)
+.+.+..+.............|.+.+++|.++.+ ..+......++.+++.++.|+++||+|||+.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 72 (485)
T TIGR00711 5 IVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQ------------VQWVITSYMLANAISIPLTGWLAKRFGTRRLFLI 72 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh------------hhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHH
Confidence 4444555555666666777889999998888765 3346677788888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHH
Q 036040 183 GFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAF 262 (338)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~ 262 (338)
+.++..++.++...... ...++...++.+.+.....+...+++.|.+|++.|+++.++......+|..++|.
T Consensus 73 ~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~ 144 (485)
T TIGR00711 73 STFAFTLGSLLCGVAPN--------LELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPT 144 (485)
T ss_pred HHHHHHHHHHHHhCcCC--------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 98888777776655431 3344455555555555556777788999999999999999999999999999999
Q ss_pred HHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCC
Q 036040 263 GFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPN 311 (338)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~ 311 (338)
+.+.+. +..+|++.|++.+.++++..++.+ +.||++
T Consensus 145 ~~~~l~-------------~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 145 LGGWII-------------ENYHWRWIFLINVPIGIIVVVVAFFILPRDK 181 (485)
T ss_pred cHhHhc-------------cCcCceehhhhhhHHHHHHHHHHHHHcCCcc
Confidence 999887 678999999888777766666555 566644
No 58
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.58 E-value=7.9e-14 Score=127.65 Aligned_cols=162 Identities=16% Similarity=0.138 Sum_probs=114.7
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccce
Q 036040 149 ARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNST 228 (338)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (338)
.........++.+++.+++|+++||+|||+++.++.++..++.++.+..... ........+++..++.+++.++..+.
T Consensus 58 ~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~r~l~G~~~g~~~~~ 135 (502)
T TIGR00887 58 SAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGS--SPKSVMATLCFWRFWLGVGIGGDYPL 135 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCc--ccchHHHHHHHHHHHHHHHHhhhhHH
Confidence 3457777888899999999999999999999999888877777666554310 00001334555566666666666777
Q ss_pred eeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC----------CCCCcchHHHHHHHHHHHH
Q 036040 229 TFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPG----------YPAGIGIKNTLFLLAAVNV 298 (338)
Q Consensus 229 ~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 298 (338)
...+++|.+|++.|++++++.+....+|..+++.+...+.......-..+. ....++||..+.+.++.++
T Consensus 136 ~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~ 215 (502)
T TIGR00887 136 SAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPAL 215 (502)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHH
Confidence 889999999999999999999999999999998887665421100000000 0123589999988777777
Q ss_pred HhHhheeecccCCC
Q 036040 299 LGLLFTFLVPEPNG 312 (338)
Q Consensus 299 ~~~~~~~~~~e~~~ 312 (338)
+.+++.+++||+.+
T Consensus 216 i~~~~~~~lpESpr 229 (502)
T TIGR00887 216 LALYFRLTIPETPR 229 (502)
T ss_pred HHHHHHHhCCCCHH
Confidence 77666668999743
No 59
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.57 E-value=7.5e-15 Score=129.39 Aligned_cols=169 Identities=8% Similarity=-0.072 Sum_probs=126.8
Q ss_pred HHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHH
Q 036040 110 LLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTV 189 (338)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 189 (338)
+.............|.+.+++|+++.+ .........++.+++.++.|+++||+|||++++.+.++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~g~s~~~------------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 72 (379)
T TIGR00881 5 AAYYLVRKNFALAMPYLVEEIGLSKTD------------LGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAI 72 (379)
T ss_pred hHHHHhHHhhhhhhHHHHHHhCCCHhH------------HHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHH
Confidence 444555666777788888888888765 34467777888888999999999999999999999888888
Q ss_pred HHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHH-HHHHhh
Q 036040 190 FMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAF-GFLYAA 268 (338)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~-~~~~~~ 268 (338)
+.++..+... ...+.+..++.+.+.....+...+++.|.+|++.|+++.++.+....+|..+++. +...+.
T Consensus 73 ~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 144 (379)
T TIGR00881 73 VNLFFGFSTS--------LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIA 144 (379)
T ss_pred HHHHHHHhhh--------HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHH
Confidence 7777765542 3334444455555555556777789999999999999999999999999999994 555554
Q ss_pred hccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCC
Q 036040 269 QDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPN 311 (338)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~ 311 (338)
...+|+..|++.+++.++..+..+ +.||++
T Consensus 145 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T TIGR00881 145 -------------ELYSWHWVFIVPGIIAIIVSLICFLLLRDSP 175 (379)
T ss_pred -------------hcCCchhHHHHHHHHHHHHHHHHheeeCCCc
Confidence 567899998888777666544444 666543
No 60
>PRK10504 putative transporter; Provisional
Probab=99.57 E-value=3.2e-14 Score=129.34 Aligned_cols=176 Identities=13% Similarity=0.052 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHH
Q 036040 102 LLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQL 181 (338)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~ 181 (338)
.+.+.+..++.....+....+.|.+.+++|.++.+ .........++..++.+++|+++||+|||++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------------~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~ 79 (471)
T PRK10504 12 LWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLH------------MHMVIVSYVLTVAVMLPASGWLADRVGVRNIFF 79 (471)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 45555666777777777888999999998887754 333556667777788999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHH
Q 036040 182 IGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGA 261 (338)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~ 261 (338)
.+.++.+++.++..+.. + ...+++..++.+.+.....+...+++.|.+|++.|+++.|+......+|..++|
T Consensus 80 ~~~~~~~~~~~~~~~~~-------~-~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 151 (471)
T PRK10504 80 TAIVLFTLGSLFCALSG-------T-LNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGP 151 (471)
T ss_pred HHHHHHHHHHHHHHHhC-------C-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 88777776666554432 1 333444445555545555566777889999999999999999999999999999
Q ss_pred HHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccC
Q 036040 262 FGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEP 310 (338)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~ 310 (338)
.+.+.+. +..+|++.|.+...++.++.+... ..|+.
T Consensus 152 ~~~g~l~-------------~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 188 (471)
T PRK10504 152 ALGGLLV-------------EYASWHWIFLINIPVGIIGAIATLMLMPNY 188 (471)
T ss_pred HHHHHHH-------------hhccHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999987 567999999887777666665555 44543
No 61
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.57 E-value=1e-13 Score=123.30 Aligned_cols=164 Identities=15% Similarity=0.093 Sum_probs=111.0
Q ss_pred hhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 036040 115 SYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLAL 194 (338)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 194 (338)
.+.....+.|.+..+.|++. .........++.+++.++.|++.||+|||+.+..+..+.+++.+++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~ 296 (399)
T PRK05122 231 GFGTIATFITLYYAARGWDG--------------AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLL 296 (399)
T ss_pred HHHHHHHHHHHHHHHccccc--------------chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 34445566777766655421 1113345566677888999999999999998888777666665555
Q ss_pred HhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 036040 195 AIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKS 274 (338)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 274 (338)
.... +... .....++.+++.....+.......|.+|++.|+++.|+.+....+|..+++.+.+.+.
T Consensus 297 ~~~~-------~~~~-~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~------ 362 (399)
T PRK05122 297 WLAP-------SPWM-ALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVA------ 362 (399)
T ss_pred HHhc-------cHHH-HHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 4432 1122 2222233333333333444455678899999999999999999999999999999887
Q ss_pred CCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCCCC
Q 036040 275 KADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGR 313 (338)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 313 (338)
+..|++..+++.+++.+++.+...++++.+++
T Consensus 363 -------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (399)
T PRK05122 363 -------SWFGYPSIFLAAALAALLGLALTWLLYRRAPR 394 (399)
T ss_pred -------HHcCHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 56789999998888888877766655554443
No 62
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.57 E-value=4.9e-14 Score=125.69 Aligned_cols=179 Identities=14% Similarity=0.064 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHH
Q 036040 101 HLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 180 (338)
..+...+..+............+|.+.+++|.++.+ .........++..++.++.|+++||+|||+.+
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------------~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l 81 (406)
T PRK15402 14 FPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEW------------VPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVM 81 (406)
T ss_pred HHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH
Confidence 334444444444444555555677788888877654 33355667778888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHH
Q 036040 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIG 260 (338)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~ 260 (338)
+.+....+++.+....... ...++...++.+.......+..+.++.|.+|++.|.++.++......++..++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g 153 (406)
T PRK15402 82 LAGVAFFILTCLAILLAQS--------IEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLG 153 (406)
T ss_pred HHHHHHHHHHHHHHHHHcc--------HHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHH
Confidence 9988777777666655431 22333334443433333345566778999999999999999988888899999
Q ss_pred HHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCC
Q 036040 261 AFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNG 312 (338)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~ 312 (338)
|.+.+.+. +..+|+..+++.+++.+++.+..+ ..||+++
T Consensus 154 ~~i~~~l~-------------~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 154 PLVGAALI-------------HVLPWRGMFVLFAALAALSFFGLWRAMPETAG 193 (406)
T ss_pred HHHHHHHH-------------HccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 99988887 567899999888888777766554 6677654
No 63
>PRK03545 putative arabinose transporter; Provisional
Probab=99.57 E-value=1.2e-13 Score=122.55 Aligned_cols=156 Identities=13% Similarity=0.061 Sum_probs=102.2
Q ss_pred hhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 036040 116 YFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLAL 194 (338)
Q Consensus 116 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 194 (338)
.+....+.+.++++ .|+++.+ .........++.+++.++.|+++||+|||.... +..+..+....+
T Consensus 221 ~~~~~~~~~~~l~~~~g~s~~~------------~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l 287 (390)
T PRK03545 221 HFTAYSYIEPFVQQVAGLSENF------------ATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLL 287 (390)
T ss_pred HHHHHHHHHHHHHHhcCCCccH------------HHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHH
Confidence 34344556666555 5666644 334556667788999999999999999886543 333333333222
Q ss_pred HhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 036040 195 AIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKS 274 (338)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 274 (338)
.... +.........++.+.......+.....+.+..| +.|++++|+.+...++|..+||.+.+.+.
T Consensus 288 ~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~------ 353 (390)
T PRK03545 288 LPAA-------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVS------ 353 (390)
T ss_pred HHHh-------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 2111 112222223333333333333344456677766 58899999999999999999999999998
Q ss_pred CCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040 275 KADPGYPAGIGIKNTLFLLAAVNVLGLLFTF 305 (338)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (338)
+..|++..+++.+++.+++.+...
T Consensus 354 -------~~~g~~~~~~~~~~~~~~~~~~~~ 377 (390)
T PRK03545 354 -------LHLGLSSIGYVGAALALAALVWSI 377 (390)
T ss_pred -------hccChhHHHHHHHHHHHHHHHHHH
Confidence 688999999988888888777655
No 64
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.57 E-value=2.2e-14 Score=125.26 Aligned_cols=162 Identities=16% Similarity=0.160 Sum_probs=124.0
Q ss_pred HHHHhHhhhhhhccHH-HHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHH
Q 036040 109 WLLLDVSYFSQNLFQK-EIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFM 187 (338)
Q Consensus 109 ~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~ 187 (338)
.+.............| .+.+++|.++.+ .........++..++.++.|+++||+|||+++..+.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~ 72 (352)
T PF07690_consen 5 FFLSGFGFSIISPALPLYLAEELGLSPSQ------------IGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLF 72 (352)
T ss_dssp HHHHHHHHHHHHHHHH-HHHCCSTTTSHC------------HHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhh
Confidence 3344444555556666 566677877766 344666778888899999999999999999999998888
Q ss_pred HHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 036040 188 TVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYA 267 (338)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~ 267 (338)
+++.++..+.. +.. .++...++.+.+.....+....++.|.+|++.|++++++......+|..+++.+.+.+
T Consensus 73 ~~~~~~~~~~~-------~~~-~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l 144 (352)
T PF07690_consen 73 ALGSLLLAFAS-------NFW-LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFL 144 (352)
T ss_dssp HHHHHHHHHHC-------CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHhhhhh-------hHH-HHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhh
Confidence 88744444322 223 4555555556555566677888999999999999999999999999999999999998
Q ss_pred hhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhh
Q 036040 268 AQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLF 303 (338)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (338)
. +..+|+..|++.+++.++..++
T Consensus 145 ~-------------~~~~~~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 145 I-------------SYFGWRWAFLISAILSLIAAIL 167 (352)
T ss_dssp C-------------CHCHHCCHHHHHHHHHHHHHHH
T ss_pred h-------------hccccccccccccchhhhhhhh
Confidence 6 6788999999999888888764
No 65
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.57 E-value=2.2e-13 Score=121.41 Aligned_cols=242 Identities=10% Similarity=0.064 Sum_probs=154.6
Q ss_pred CchhhhhhhHHHHHHHHHH-HhccCCchhhhhhcCChhhHHHHHHHhhhhcCCCCchhHHHHHhhhhccccccCCCCCCC
Q 036040 1 WRIVLMFGALPIAFTYYWR-MKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQVQAVDQRNDVVCGAADHDD 79 (338)
Q Consensus 1 WR~~f~~~~i~~~i~~~~~-~~lpEsp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (338)
|+.+|++.++.+++..+++ ++..|+|.- ++.-.+++.+.+++-. .+++.+
T Consensus 194 W~sifY~~g~~g~i~~~~w~~~~~d~P~~---h~~is~~El~~I~~~k--------------------------~~~~~~ 244 (466)
T KOG2532|consen 194 WPSIFYVFGIVGLIWFILWFLFYSDSPSK---HPNISEKELKYIEKGK--------------------------SEAHVK 244 (466)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcCCccc---CCCCCHHHHHHHHhcc--------------------------cccccC
Confidence 9999999888888766555 456788863 2222222222221111 011111
Q ss_pred cccccchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHh
Q 036040 80 DDKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALC 158 (338)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
.+.+.+++++++++.. +.+.+..++.+..++.+..|.|.|+++ +|++-.+ ++..+++..+
T Consensus 245 ~~~~vP~~~i~ts~~v-------wai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~------------~G~~salP~l 305 (466)
T KOG2532|consen 245 KKPPVPYKAILTSPPV-------WAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRE------------TGFLSALPFL 305 (466)
T ss_pred CCCCCCHHHHHcCHHH-------HHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhh------------hhHHHHHHHH
Confidence 1246677788777654 567778888889999999999999998 5777655 5568889999
Q ss_pred ccchhHHHHHHHHHhhch---------HHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCcccee
Q 036040 159 GLIPGYWITVILIDIIGR---------VTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTT 229 (338)
Q Consensus 159 ~~~~~~~~~g~l~d~~gr---------r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (338)
..++..+++|.++||.-+ |..-.++..+.+++++++++... ......++++.+..++.+ ...+-.
T Consensus 306 ~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~-----~~~~~a~~~l~~~~~~~g-~~~~Gf 379 (466)
T KOG2532|consen 306 AMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSD-----EHRLLAVILLTIAIGLSG-FNISGF 379 (466)
T ss_pred HHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCC-----CcchHHHHHHHHHHHHcc-cchhhh
Confidence 999999999999998754 33334444444455544444331 112222222222222222 111222
Q ss_pred eeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeec
Q 036040 230 FIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLV 307 (338)
Q Consensus 230 ~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (338)
+.-..+. .++.-+..+|+.+....+.++++|.+.+.+.. . .+...|+..|++.+++.+++.++..+.
T Consensus 380 ~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~---------~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 380 YKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVT-D---------NTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred Hhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeC-C---------CCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 2222332 45666999999999999999999999999872 0 034579999999999988887666533
No 66
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.56 E-value=4.4e-14 Score=129.36 Aligned_cols=179 Identities=16% Similarity=0.131 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHH
Q 036040 99 GLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVT 178 (338)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~ 178 (338)
++.+..+.+.++...+..+......|.+.+++|+++.+ .........++..++.++.|+++||+|||+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~------------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~ 86 (496)
T PRK03893 19 WKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQ------------AASLISAAFISRWFGGLLLGAMGDRYGRRL 86 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 34555566666666677777777888888888877654 334566667788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHH
Q 036040 179 IQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAI 258 (338)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~ 258 (338)
++..+.++.+++.++..+... ...+.+..++.+++..+..+....++.|.+|++.|+++.++......+|..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 158 (496)
T PRK03893 87 AMVISIVLFSVGTLACGFAPG--------YWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAV 158 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 999988887777776665432 333444445555554555566677889999999999999999999999999
Q ss_pred HHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccC
Q 036040 259 IGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEP 310 (338)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 310 (338)
+++.+.+.+. +..+|+..|.+.++..++.++.....||+
T Consensus 159 ~~~~~~~~l~-------------~~~~w~~~f~~~~~~~~~~~~~~~~~p~~ 197 (496)
T PRK03893 159 VAAQVYSLVV-------------PVWGWRALFFIGILPIIFALWLRKNLPEA 197 (496)
T ss_pred HHHHHHHHHh-------------ccCCHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999887 67899998876544444333332355664
No 67
>PRK03699 putative transporter; Provisional
Probab=99.56 E-value=2.9e-14 Score=126.53 Aligned_cols=172 Identities=12% Similarity=0.080 Sum_probs=114.7
Q ss_pred HHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHH
Q 036040 105 TASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIG 183 (338)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~ 183 (338)
..+..++....+++...|.|.++++ .|+++.+ +........++.+++.+++|+++||++||+.+...
T Consensus 210 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~ 277 (394)
T PRK03699 210 LAIAALLYILAQLTFISWVPEYAQKKFGMSLED------------AGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVL 277 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH------------hhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Confidence 3344445555667788899999965 5777655 33355666677888999999999999999988876
Q ss_pred HHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHH
Q 036040 184 FFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFG 263 (338)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~ 263 (338)
..+..+...++.... +.. ......+..++...+..+...++..|..|. .+++..+.......+|..++|.+
T Consensus 278 ~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~ 348 (394)
T PRK03699 278 AGLALVLMYLFVNTD-------DPS-HLLYAILGLGFFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVV 348 (394)
T ss_pred HHHHHHHHHHHHHcC-------Cch-HHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHH
Confidence 655554433332221 112 222222333333333444444556676664 45778888888999999999999
Q ss_pred HHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccC
Q 036040 264 FLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEP 310 (338)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 310 (338)
.+++. +..|++..++..+++.+++.+.....+++
T Consensus 349 ~G~l~-------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (394)
T PRK03699 349 TSPIV-------------AHFGLQAALLTANGLYAVVFVMCILLGFV 382 (394)
T ss_pred HHHHH-------------HHhCchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99998 46788888888887777776655555443
No 68
>PRK03699 putative transporter; Provisional
Probab=99.56 E-value=1.5e-13 Score=122.09 Aligned_cols=173 Identities=10% Similarity=0.047 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHH
Q 036040 101 HLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 180 (338)
..+...+.++......+......|.+.+++|+++.+ .........++..++.+++|++.||+|||+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~------------~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~ 75 (394)
T PRK03699 8 LTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSS------------MSNTFTFLNAGILISIFLNAWLMEIIPLKRQL 75 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 445555566666666777888889998888887755 33356667778888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHH
Q 036040 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIG 260 (338)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~ 260 (338)
+.+.++.+++.++..+... ...+.+..++.+.+.....+....++.|.+|++.|+.+.++.+....+++.++
T Consensus 76 ~~~~~~~~i~~~l~~~~~~--------~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~ 147 (394)
T PRK03699 76 IFGFALMILAVAGLMFSHS--------LALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIF 147 (394)
T ss_pred HHHHHHHHHHHHHHHHcch--------HHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHH
Confidence 9888877777776665431 22333333444433333445566778999999999999999888888889999
Q ss_pred HHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040 261 AFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF 305 (338)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (338)
|.+.+.+.. ...+|+..|.+.+++.++..++.+
T Consensus 148 ~~~~~~l~~------------~~~gw~~~f~~~~~~~~~~~~~~~ 180 (394)
T PRK03699 148 PIIAAYLLA------------RSIEWYWVYACIGLVYVAIFILTL 180 (394)
T ss_pred HHHHHHHHh------------ccccHHHHHHHHHHHHHHHHHHHH
Confidence 988887753 457999999888877666554433
No 69
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.56 E-value=4.7e-14 Score=124.73 Aligned_cols=176 Identities=16% Similarity=0.058 Sum_probs=131.4
Q ss_pred HHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHH
Q 036040 103 LGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLI 182 (338)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~ 182 (338)
....+..+......+......|.+.+++|++..+ .........++..++.++.|+++||+|||+++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~------------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 73 (382)
T PRK10091 6 LSLALGTFGLGMAEFGIMGVLTELAHDVGISIPA------------AGHMISYYALGVVVGAPIIALFSSRYSLKHILLF 73 (382)
T ss_pred HHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHH------------HhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence 3444455555566666777889998998888765 3346777788888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHH
Q 036040 183 GFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAF 262 (338)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~ 262 (338)
+.++.+++.++.++... ...+.+..++.+.+.....+....++.|.+|++.|++++++......++..+++.
T Consensus 74 ~~~~~~~~~~l~~~~~~--------~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 145 (382)
T PRK10091 74 LVALCVIGNAMFTLSSS--------YLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIP 145 (382)
T ss_pred HHHHHHHHHHHHHHhCc--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhcc
Confidence 98888888777666542 3334444444444333333444566789999999999999999888999999999
Q ss_pred HHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCC
Q 036040 263 GFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPN 311 (338)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~ 311 (338)
+.+.+. +..+|+.+|.+.++..++..+..+ ++||.+
T Consensus 146 l~~~l~-------------~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 146 LGTYLS-------------QEFSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred HHHHHh-------------hhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 988886 567999999988887766665544 678754
No 70
>PRK10054 putative transporter; Provisional
Probab=99.56 E-value=3.9e-14 Score=125.60 Aligned_cols=174 Identities=13% Similarity=0.022 Sum_probs=123.5
Q ss_pred HHHHHHHHHhHhhhhhhccHHHHHH-HccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHH
Q 036040 104 GTASTWLLLDVSYFSQNLFQKEIFT-AVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLI 182 (338)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~ 182 (338)
.+.+..++...+++....++|.+++ ++|+++.+ .....+...++.+++.++.|+++||+|||++++.
T Consensus 11 ~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~------------~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~ 78 (395)
T PRK10054 11 ALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDL------------IGYAMTIALTIGVVFSLGFGILADKFDKKRYMLL 78 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHH
Confidence 3444556666677777778887775 46887765 3445666677778889999999999999999988
Q ss_pred HHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHH
Q 036040 183 GFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAF 262 (338)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~ 262 (338)
+.+...++.+++.+... ....+......+.......+....+..|.+|++.|+++.|+.+...++|..++|.
T Consensus 79 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~ 150 (395)
T PRK10054 79 AITAFASGFIAIPLVNN--------VTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPP 150 (395)
T ss_pred HHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777776666555432 2222222222222222334556677899999999999999999999999999999
Q ss_pred HHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCC
Q 036040 263 GFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPN 311 (338)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~ 311 (338)
+.+.+. ..+|+.+|.+.+++.+++.+... ++||++
T Consensus 151 l~~~l~--------------~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~ 186 (395)
T PRK10054 151 LGTLLV--------------MQSINLPFWLAAICSAFPLVFIQIWVQRSE 186 (395)
T ss_pred HHHHHH--------------HhccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999886 25788899888777777655554 566553
No 71
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.56 E-value=4.3e-14 Score=128.01 Aligned_cols=170 Identities=14% Similarity=0.001 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHhHhhhhhhccHHHHHHH---ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHh-hch
Q 036040 101 HLLGTASTWLLLDVSYFSQNLFQKEIFTA---VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDI-IGR 176 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~gr 176 (338)
.++.+.+..++....+|+...++|.|+.+ +|+++.+ +........++..++.+++|+++|| +||
T Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~------------ag~~~~~~~~~~~~~~~~~G~laDr~~G~ 78 (475)
T TIGR00924 11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQ------------AFIIFGAYSALVYLLTSVGWWFGDRVWGT 78 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHH------------HHHHHHHHHHHHHHHHhhHHHHHHhhcch
Confidence 34455566677788899999999999876 5666644 4456677777888899999999999 899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccc---hhhhHHHHHHHH
Q 036040 177 VTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARF---RSTCHGISAAAG 253 (338)
Q Consensus 177 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~---R~~~~~~~~~~~ 253 (338)
|+++.++.++.+++.+++++... ...+.+...+.+.+.+...+...+++++.+|++. |+++.++.+...
T Consensus 79 ~~~l~~~~~~~~~g~~~~~~~~~--------~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~ 150 (475)
T TIGR00924 79 KKTMVLGGIVLMLGHFMLAMSIY--------PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSI 150 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc--------HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHH
Confidence 99999999888888777665431 2222233333444444455666778899998754 889999999999
Q ss_pred HHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhh
Q 036040 254 KAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLF 303 (338)
Q Consensus 254 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (338)
++|+.++|.+.+.+. +..||+..|.+.++..+++.+.
T Consensus 151 niG~~ig~~l~g~l~-------------~~~g~~~~f~~~~~~~~~~~l~ 187 (475)
T TIGR00924 151 NIGSFISPLLAGVIA-------------ENYGYHVGFNLAAVGMVIGLLT 187 (475)
T ss_pred HHHHHHHHHHHHHHH-------------HhcChHHHHHHHHHHHHHHHHH
Confidence 999999999999997 5678999998877655555443
No 72
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.56 E-value=1.3e-13 Score=125.76 Aligned_cols=199 Identities=14% Similarity=0.032 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHH
Q 036040 102 LLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQL 181 (338)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~ 181 (338)
.+...+.++.....+.......|.+.+++..+.+.. .....+........++..+|.+++|+++||+|||+++.
T Consensus 18 ~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~ 91 (490)
T PRK10642 18 ITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPS------VQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILA 91 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 344445555555555555556666655543222110 01111112245667788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHH
Q 036040 182 IGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGA 261 (338)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~ 261 (338)
++.++.+++.++.++...+..-.......+++..++.+++.++..+....+++|.+|++.|+...++......+|..+++
T Consensus 92 ~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~ 171 (490)
T PRK10642 92 ITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGA 171 (490)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999988888765321000000113455566667666777777888999999999999999998887778888877
Q ss_pred HHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCC
Q 036040 262 FGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPN 311 (338)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 311 (338)
.+...+...... .....+|||..|++.+++.+++.++...+||+.
T Consensus 172 ~~~~~~~~~~~~-----~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp 216 (490)
T PRK10642 172 GVVVLISTIVGE-----ANFLDWGWRIPFFIALPLGIIGLYLRHALEETP 216 (490)
T ss_pred HHHHHHHHhcCH-----HHhcCccHHHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 665544311000 000357999999987766665554444778864
No 73
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.55 E-value=3.2e-14 Score=124.52 Aligned_cols=165 Identities=10% Similarity=-0.015 Sum_probs=117.8
Q ss_pred HhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 036040 114 VSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLA 193 (338)
Q Consensus 114 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 193 (338)
..+..+....|.+.+++|+++.+ .........++..++.+..|+++||+|||++++.+......+..
T Consensus 5 ~~~~~~~~~lp~i~~~~~~s~~~------------~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~- 71 (368)
T TIGR00903 5 AIWVTFSPVLSLVAEDIDVSKEE------------LGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG- 71 (368)
T ss_pred HHHHHHHhhHHHHHHHhCcCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-
Confidence 34555677888998998888765 33356677788888999999999999999877655433333221
Q ss_pred HHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 036040 194 LAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDK 273 (338)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 273 (338)
..... .....+.+..++.+.+... ........+|.+|++.|++++++......+|..+++.+.+.+.
T Consensus 72 ~~~~~-------~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~----- 138 (368)
T TIGR00903 72 RLLDP-------FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIY----- 138 (368)
T ss_pred HHHHh-------ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 11110 1133445455555444332 3344455689999999999999999999999999999999987
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCC
Q 036040 274 SKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNG 312 (338)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~ 312 (338)
+..|||..|++.++++++..++.+ ++||+++
T Consensus 139 --------~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~ 170 (368)
T TIGR00903 139 --------TAGGLQLLIIPIAAVAAAGIILVLAALPALPF 170 (368)
T ss_pred --------HccchHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 578999999988888777766655 7888643
No 74
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.55 E-value=9.5e-14 Score=124.37 Aligned_cols=170 Identities=15% Similarity=0.097 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhh-chHHH
Q 036040 102 LLGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDII-GRVTI 179 (338)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~ 179 (338)
+...+...+.....+|++..++|.++.+ +|+++.+ +........+...++.+++|+++||+ |||+.
T Consensus 11 l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~------------a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~ 78 (493)
T PRK15462 11 IYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNH------------AYELFSAYCSLVYVTPILGGFLADKVLGNRMA 78 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHccCcHHH
Confidence 3445555566778899999999999876 5776644 34455566677777888999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCcc--chhhhHHHHHHHHHHHH
Q 036040 180 QLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR--FRSTCHGISAAAGKAGA 257 (338)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~R~~~~~~~~~~~~~g~ 257 (338)
++++.++..++.+++..... ..........+ ...+.+...+...++++|.+|++ .|+++.++.++..++|+
T Consensus 79 iliG~il~~lg~lll~~~~~------~~~~~~l~l~l-i~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~ 151 (493)
T PRK15462 79 VMLGALLMAIGHVVLGASEI------HPSFLYLSLAI-IVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGS 151 (493)
T ss_pred HHHHHHHHHHHHHHHHHhhc------chhHHHHHHHH-HHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHH
Confidence 99998887777665543210 11111111111 11222233344567889999986 79999999999999999
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhh
Q 036040 258 IIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLF 303 (338)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (338)
.++|.+.+.+. +..||+..|.+.++..+++++.
T Consensus 152 ~iap~l~g~L~-------------~~~Gw~~~F~iaaigm~l~li~ 184 (493)
T PRK15462 152 IIAPIACGYAQ-------------EEYSWAMGFGLAAVGMIAGLVI 184 (493)
T ss_pred HHHHHHHHHHH-------------hhhChHHHHHHHHHHHHHHHHH
Confidence 99999999997 5789999998766554444443
No 75
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.55 E-value=4.6e-14 Score=128.32 Aligned_cols=180 Identities=14% Similarity=0.020 Sum_probs=122.1
Q ss_pred HHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHH
Q 036040 110 LLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTV 189 (338)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 189 (338)
++............|....+.+++..... +.+............++..++.+++|+++||+|||++++.+.++..+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~ 113 (481)
T TIGR00879 38 LMFGYDTGVIGGALALPAFEFKFTSANSD----SYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVI 113 (481)
T ss_pred HhcccccchhhhhhhcHHHHHhcCCcccC----CCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHH
Confidence 33333333344455555556555522100 00012245567778888899999999999999999999998888777
Q ss_pred HHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHH---HH
Q 036040 190 FMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGF---LY 266 (338)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~---~~ 266 (338)
+.++....... .....+++..++.+.+.....+....+++|.+|++.|++++++.+....+|..+++.+. ..
T Consensus 114 ~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~ 188 (481)
T TIGR00879 114 GAILMGLAAFA-----LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVS 188 (481)
T ss_pred HHHHHHHhccc-----cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 77666543311 11223444455555555555566778899999999999999999999999999999988 44
Q ss_pred hhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCC
Q 036040 267 AAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPN 311 (338)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 311 (338)
.. ...+|+..|++.++..++..+..+++||+.
T Consensus 189 ~~-------------~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~ 220 (481)
T TIGR00879 189 LN-------------NTLGWRIPLGLQLIPAGLLFLGLFFLPESP 220 (481)
T ss_pred CC-------------CCccHHHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 33 567999999887666666655555778764
No 76
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.55 E-value=4.6e-13 Score=120.18 Aligned_cols=188 Identities=19% Similarity=0.148 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHhHhhhhhhccHHHHHH-HccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchH--
Q 036040 101 HLLGTASTWLLLDVSYFSQNLFQKEIFT-AVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRV-- 177 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr-- 177 (338)
.+...++.+++..-+...+..+...+.+ .+|+++.+ .....+...+.+++|++++|++.||+|.|
T Consensus 282 ~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~------------l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~ 349 (477)
T PF11700_consen 282 QLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQ------------LIVFGLVVQIVAIIGALLFGWLQDRFGPKTK 349 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchh
Confidence 4555666667766777777777777776 47888866 33466777888889999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHh--hhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHH
Q 036040 178 TIQLIGFFFMTVFMLALAI--PYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKA 255 (338)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~ 255 (338)
++++.+.++..+..+.-.+ ... .... .....+.++.++.+...++.++..-++.+|+.|+...+..+|+....+..
T Consensus 350 ~~l~~~l~~~~~i~~~g~~G~~~~-~~g~-~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ 427 (477)
T PF11700_consen 350 RTLLISLILWIIIPLYGLFGFWPS-FFGL-KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKA 427 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-ccCc-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 7777766555333322222 111 0001 22333555555666677777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCCCCC
Q 036040 256 GAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGRS 314 (338)
Q Consensus 256 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 314 (338)
.+.+||++++.+.+ ...+.|..+....++.++++++.+.++..++++
T Consensus 428 ss~lGPll~g~i~~------------~tg~~r~g~~~l~~lf~~gl~ll~~v~~~~g~~ 474 (477)
T PF11700_consen 428 SSWLGPLLFGLITD------------ATGSQRYGFLFLLVLFLIGLILLFFVDVEKGRE 474 (477)
T ss_pred HHHHHHHHHHHHHH------------HhCCchhHHHHHHHHHHHHHHHHhhccchhhhh
Confidence 99999999999985 233477888888888888888877887766654
No 77
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.54 E-value=8.3e-14 Score=126.29 Aligned_cols=168 Identities=11% Similarity=0.006 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHh-hch
Q 036040 99 GLHLLGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDI-IGR 176 (338)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~gr 176 (338)
++.++.+++..+.....+|+...+++.|+++ +|++..+ +............+..+++|+++|| +||
T Consensus 13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~------------a~~i~~~~~~~~~~~~~~~G~laDr~~G~ 80 (489)
T PRK10207 13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQ------------AFITFGAFAALVYGLISIGGYVGDHLLGT 80 (489)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHhhHHHhhhhccch
Confidence 3445566666677889999999999988765 6666543 2223333343444456689999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCcc--chhhhHHHHHHHHH
Q 036040 177 VTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR--FRSTCHGISAAAGK 254 (338)
Q Consensus 177 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~R~~~~~~~~~~~~ 254 (338)
|++++++.++..++.+++.+... ....+.+.....+.+.+...+...+++.|.+|++ .|+.++++.+...+
T Consensus 81 r~~~~~g~~~~~~g~~~~~~~~~-------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~n 153 (489)
T PRK10207 81 KRTIVLGAIVLAIGYFMTGMSLL-------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSIN 153 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHH
Confidence 99999999888888777765431 1122223333444445555667778999999887 45788999999999
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHH
Q 036040 255 AGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNV 298 (338)
Q Consensus 255 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (338)
+|..++|.+.+++. +..||++.|++.++..+
T Consensus 154 ig~~~g~~l~g~l~-------------~~~gw~~~F~i~~i~~~ 184 (489)
T PRK10207 154 IGSLISLSLAPVIA-------------DKFGYSVTYNLCGAGLI 184 (489)
T ss_pred HHHHHHHHHHHHHH-------------HhhChHHHHHHHHHHHH
Confidence 99999999999997 57799999987654333
No 78
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.54 E-value=1e-13 Score=126.32 Aligned_cols=158 Identities=20% Similarity=0.120 Sum_probs=113.3
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhc----ccccchhhHHHHHHHHHHhhccC
Q 036040 149 ARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHW----IQKHNSTGFVVMYALTFFFANFG 224 (338)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 224 (338)
.........++.+++.+++|+++||+|||++++.+.++.+++.++.++..... ..+.+....+++..++.+.+.++
T Consensus 57 ~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~ 136 (479)
T PRK10077 57 LGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGL 136 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhH
Confidence 44577788889999999999999999999999999888777766665432100 00112233445566666776677
Q ss_pred ccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhe
Q 036040 225 PNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFT 304 (338)
Q Consensus 225 ~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (338)
..+...++++|.+|++.|++++++......+|..+++.+...+.... +.......||+..|++.+++.++..+..
T Consensus 137 ~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~-----~~~~~~~~gWr~~f~~~~~~~~~~~~~~ 211 (479)
T PRK10077 137 ASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSG-----DASWLNTDGWRYMFASEAIPALLFLMLL 211 (479)
T ss_pred HhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccC-----cccccccCChHHHHHHHHHHHHHHHHHH
Confidence 77778889999999999999999999888888888877665543100 0001135699999998877777766655
Q ss_pred eecccCC
Q 036040 305 FLVPEPN 311 (338)
Q Consensus 305 ~~~~e~~ 311 (338)
+++||+.
T Consensus 212 ~~l~~s~ 218 (479)
T PRK10077 212 YFVPETP 218 (479)
T ss_pred HcCCCCc
Confidence 5888875
No 79
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.53 E-value=6.6e-14 Score=125.41 Aligned_cols=137 Identities=16% Similarity=0.061 Sum_probs=94.7
Q ss_pred HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeee
Q 036040 152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFI 231 (338)
Q Consensus 152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (338)
...+..++.+++.+++|+++||+|||+.+..+.++.++...++.+.. + ...+....++.+.......+....
T Consensus 267 ~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~-------~-~~~~~~~~~l~g~~~~~~~~~~~~ 338 (420)
T PRK09528 267 LNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFAT-------G-PLEVSILKLLHAFEVPFLLVGVFK 338 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcc-------c-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566678899999999999999998888777666665555432 2 222222222222222222233446
Q ss_pred eecccCCccchhhhHHH-HHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-eccc
Q 036040 232 VPAEIFPARFRSTCHGI-SAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPE 309 (338)
Q Consensus 232 ~~~e~~p~~~R~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e 309 (338)
++.|.+|++.|++..+. .++...+|.++++.+.+.+. +..||+..|.+.+++.++..++.+ .+++
T Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~-------------~~~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 339 YITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLY-------------DSIGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHH-------------HhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77889999999988766 56678899999999999998 567899999988888777666555 4443
No 80
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.53 E-value=5.1e-14 Score=127.83 Aligned_cols=143 Identities=15% Similarity=0.049 Sum_probs=111.7
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccce
Q 036040 149 ARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNST 228 (338)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (338)
.+.......++.+++.+++|+++||+|||+.+..+.++.+++.++..+... .....+++..++.+.+.....+.
T Consensus 78 ~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~------~~~~~l~~~r~~~G~~~~~~~~~ 151 (465)
T TIGR00894 78 QGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG------GGIALVVFCRVIQGLAQGSVSPA 151 (465)
T ss_pred hhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH------cCchHHHHHHHHHHHhcccchhh
Confidence 444667778888899999999999999999999988877777666543321 11334555566666666677777
Q ss_pred eeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC-cchHHHHHHHHHHHHHhHhhee-e
Q 036040 229 TFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAG-IGIKNTLFLLAAVNVLGLLFTF-L 306 (338)
Q Consensus 229 ~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~ 306 (338)
...+++|.+|++.|++++|+......+|.++++.+.+.+. +. .+|+..|++.+++.++..++.+ +
T Consensus 152 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~-------------~~~~gw~~~f~i~~~~~~~~~~~~~~~ 218 (465)
T TIGR00894 152 THKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLC-------------ESWGGWPMIFYVFGIVGCAWSLLWFVF 218 (465)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hccCCCCeehhhhhHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999887 45 4999999988888777666555 4
Q ss_pred cccC
Q 036040 307 VPEP 310 (338)
Q Consensus 307 ~~e~ 310 (338)
.+|+
T Consensus 219 ~~~~ 222 (465)
T TIGR00894 219 PADD 222 (465)
T ss_pred hcCC
Confidence 4443
No 81
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.53 E-value=1.4e-13 Score=122.79 Aligned_cols=162 Identities=14% Similarity=0.063 Sum_probs=118.7
Q ss_pred hhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhh
Q 036040 118 SQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIP 197 (338)
Q Consensus 118 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 197 (338)
....-+|.+.+++|.+... .........++..++.+++|+++||+|||++++.+.++.+++.++....
T Consensus 34 ~~~p~l~~i~~~~~~~~~~------------~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a 101 (413)
T PRK15403 34 LIQPGIINVVRDFNADVSL------------APASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT 101 (413)
T ss_pred hhccCHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc
Confidence 3344455666666665543 3345666678888899999999999999999999988877777766654
Q ss_pred hhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 036040 198 YHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKAD 277 (338)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 277 (338)
.. ...+++..++.+.+.....+..+.++.|.+|++.|++++++.+....++..++|.+.+.+.
T Consensus 102 ~~--------~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~--------- 164 (413)
T PRK15403 102 TS--------MTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALM--------- 164 (413)
T ss_pred CC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 32 3334444444444333333445577889999999999999999999999999999998886
Q ss_pred CCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCC
Q 036040 278 PGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNG 312 (338)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~ 312 (338)
+..||+..|++.+++.+++.+..+ .+||+++
T Consensus 165 ----~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 165 ----HFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred ----HhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 467999999998888777766544 6788754
No 82
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.53 E-value=3.5e-15 Score=127.82 Aligned_cols=185 Identities=18% Similarity=0.085 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHH
Q 036040 100 LHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTI 179 (338)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~ 179 (338)
+....+++...++...-|.+....+..-+.+|.++...++ +.....+...++++++|++.||+.||++
T Consensus 33 ~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gl------------l~~vf~v~~~i~sPl~gyLadryNR~~v 100 (493)
T KOG1330|consen 33 LTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGL------------LQTVFIVVFMIASPLFGYLADRYNRKRV 100 (493)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccc------------hhHHHHHHHHHHHHHHHHHHhhcCcceE
Confidence 3556666777777777777777777666667888877544 7777888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHH
Q 036040 180 QLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAII 259 (338)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~ 259 (338)
+.+|..+..++.++.++... .+.+.+...+.+.+-..+.++..++++|.+|..+|++++++.++...+|+.+
T Consensus 101 ~~vG~~iW~~Av~~~~fs~~--------Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsgl 172 (493)
T KOG1330|consen 101 IAVGIFIWTLAVFASGFSNH--------FWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGL 172 (493)
T ss_pred EeeHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccce
Confidence 99999999988888887754 5566777777777778888999999999999999999999999999999998
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCCCChh
Q 036040 260 GAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNGRSLE 316 (338)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~ 316 (338)
|-.....+.. ....||++|...+++.+++.++.+ +++|..++..+
T Consensus 173 G~vvgs~va~------------~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~ 218 (493)
T KOG1330|consen 173 GYVVGSVVAS------------LTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARD 218 (493)
T ss_pred eEEeeeeecc------------CccceEEEEEeehHHHHHHHHHHHhhccCccccccc
Confidence 8888777763 233499999999999999888887 77776654333
No 83
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.53 E-value=2.5e-13 Score=120.64 Aligned_cols=179 Identities=9% Similarity=-0.021 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHH
Q 036040 101 HLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 180 (338)
..+......++............|.+.+++|+++.+ .........++..++.++.|+++||+|||+.+
T Consensus 9 ~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~------------~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~ 76 (394)
T PRK11652 9 LLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGA------------VQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVI 76 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHhhhhHHHhcCChHHH
Confidence 334444444444445555556678888888888765 34466677888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHH
Q 036040 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIG 260 (338)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~ 260 (338)
+.+.+...++.++..... + ...+.+..++.+.+.....+....+..|.++.+.|+.+.++.+....++..++
T Consensus 77 ~~~~~~~~~~~~~~~~~~-------~-~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 148 (394)
T PRK11652 77 LVGMSIFILGTLVALFAH-------S-LTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLA 148 (394)
T ss_pred HHHHHHHHHHHHHHHHHc-------c-HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 988777776666554432 1 22333333333333322234445567888898999999999988888899999
Q ss_pred HHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCC
Q 036040 261 AFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNG 312 (338)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~ 312 (338)
|.+.+.+. +..||+..|++.++..++..+... +.||++.
T Consensus 149 ~~i~~~l~-------------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 188 (394)
T PRK11652 149 PLIGGLLT-------------TLFGWRACYLFLLLLGAGVTFSMARWMPETRP 188 (394)
T ss_pred HHHHHHHH-------------hccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence 99998886 567899999888776665544443 6777643
No 84
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.53 E-value=5.3e-14 Score=127.02 Aligned_cols=163 Identities=15% Similarity=0.061 Sum_probs=106.3
Q ss_pred HHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhh--chHHHHHHHH-
Q 036040 108 TWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDII--GRVTIQLIGF- 184 (338)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~~~~~~- 184 (338)
..+.....++....++|.+.++.|+++.+ ......+..++.+++.+++|+++||. ++|+...++.
T Consensus 249 ~~~l~~~~~~~~~~~l~~~~~~~g~s~~~------------~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 316 (455)
T TIGR00892 249 GNVIMFLGFFAPIIFLVPYAKDKGVDEYE------------AAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFA 316 (455)
T ss_pred HHHHHHHHccchHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHH
Confidence 34444556667777888888887776644 33455666777888888999999973 3443333322
Q ss_pred -HHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHH
Q 036040 185 -FFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFG 263 (338)
Q Consensus 185 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~ 263 (338)
+..+++.++..... + ...+++..++.++......+..++++.|.+|++.+++++|+.+....+|++++|.+
T Consensus 317 ~~~~~l~~ll~~~~~-------~-~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i 388 (455)
T TIGR00892 317 LLFNGLTHLLCALAG-------D-YTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPL 388 (455)
T ss_pred HHHHHHHHHHHHHhc-------h-HHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccc
Confidence 22222222222111 1 22233333344444444455667788899999999999999999999999999999
Q ss_pred HHHhhhccccCCCCCCCCCCc-chHHHHHHHHHHHHHhHhh
Q 036040 264 FLYAAQDQDKSKADPGYPAGI-GIKNTLFLLAAVNVLGLLF 303 (338)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 303 (338)
.+.+. +.. +|+..|++.+++.+++.+.
T Consensus 389 ~G~l~-------------~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 389 AGRLV-------------DATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred eeeee-------------hhcCCcchHHHHhhHHHHHHHHH
Confidence 99887 334 5888888777766665543
No 85
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.52 E-value=2.5e-13 Score=122.76 Aligned_cols=165 Identities=12% Similarity=-0.002 Sum_probs=110.4
Q ss_pred hhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHh
Q 036040 117 FSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAI 196 (338)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 196 (338)
.++....|.+.++ |+++.+ .........++..++.+++|+++||+|||++++.+.++.++..+++.+
T Consensus 46 ~~~~~~~p~l~~~-g~s~~~------------~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~ 112 (452)
T PRK11273 46 KNFALAMPYLVEQ-GFSRGD------------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGF 112 (452)
T ss_pred HHHHHhhHHHHHc-CCCHHH------------HHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHh
Confidence 3455667776655 777655 344667778888889999999999999999999998887777776665
Q ss_pred hhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHH-HHHHHHHhhhccccCC
Q 036040 197 PYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAII-GAFGFLYAAQDQDKSK 275 (338)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~ 275 (338)
.... ......+.+..++.+.+.....+.....+.|.+|++.|++++|+.+....+|+.+ ++.+...+.
T Consensus 113 ~~~~----~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~------- 181 (452)
T PRK11273 113 VPWA----TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMA------- 181 (452)
T ss_pred hhcc----cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-------
Confidence 4210 0112233333333343333344444466789999999999999998888887644 454433332
Q ss_pred CCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCC
Q 036040 276 ADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPN 311 (338)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~ 311 (338)
...+|+..|++.+++.++..++.. ++||+.
T Consensus 182 ------~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~ 212 (452)
T PRK11273 182 ------WFNDWHAALYMPAFAAILVALFAFAMMRDTP 212 (452)
T ss_pred ------HhccHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence 234899999988877666555444 667653
No 86
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.52 E-value=1.3e-13 Score=120.82 Aligned_cols=164 Identities=13% Similarity=-0.020 Sum_probs=118.1
Q ss_pred HhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 036040 114 VSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLA 193 (338)
Q Consensus 114 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 193 (338)
..........|.+..+.+.++.+ .........++.+++.++.|+++||+|||++++.+.++..++.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~s~~~------------~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~ 80 (365)
T TIGR00900 13 IGTAITQVALPLYVLAGTGSASV------------LSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAV 80 (365)
T ss_pred HHHHHHHHHHHHHHHHhhccHHH------------HHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHH
Confidence 33444445566677776655543 444677778888889999999999999999999988777766666
Q ss_pred HHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 036040 194 LAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDK 273 (338)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 273 (338)
..+.... .......+.+..++.+.+.....+...+++.|.+|++.|+++.|+.+....+|.+++|.+.+.+.
T Consensus 81 ~~~~~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~----- 152 (365)
T TIGR00900 81 LPFVALL---GGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY----- 152 (365)
T ss_pred HHHHHHc---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-----
Confidence 5544310 00123334444444444444455667788999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040 274 SKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF 305 (338)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (338)
+..+|+..|++.++..++..+..+
T Consensus 153 --------~~~g~~~~~~~~~~~~~~~~~~~~ 176 (365)
T TIGR00900 153 --------ATLGIKWAIWVDAVGFAISALLIV 176 (365)
T ss_pred --------HHhhHHHHHHHHHHHHHHHHHHHH
Confidence 567899999887776666554443
No 87
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.52 E-value=5.8e-13 Score=118.86 Aligned_cols=176 Identities=15% Similarity=0.082 Sum_probs=125.3
Q ss_pred HHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHH
Q 036040 106 ASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFF 185 (338)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~ 185 (338)
.+..++....+.....++|.+.+++|.+..+.. .........+..+...++.++.|+++||+|||+.++.+.+
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~-------~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 92 (408)
T PRK09874 20 WLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSAL-------NMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSAL 92 (408)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhCCccchhH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHH
Confidence 334455556666677789999999888764410 0112345667777888899999999999999999998887
Q ss_pred HHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 036040 186 FMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFL 265 (338)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~ 265 (338)
..+++.+++..... ...+.+..++.+.. .+..+....++.+.+|++.|+++.++......+|..++|.+.+
T Consensus 93 ~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 163 (408)
T PRK09874 93 GMGIVMVLMGLAQN--------IWQFLILRALLGLL-GGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGG 163 (408)
T ss_pred HHHHHHHHHHHHhh--------HHHHHHHHHHHHHh-hhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776666554331 22333333333332 2334555567788999999999999999999999999999999
Q ss_pred HhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccC
Q 036040 266 YAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEP 310 (338)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~ 310 (338)
.+. +..+|+..|++.+++.++..+..+ ++||.
T Consensus 164 ~l~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 164 LLA-------------DSYGLRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred HHH-------------HHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 887 567899999888887776666555 55654
No 88
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.51 E-value=1.3e-13 Score=124.15 Aligned_cols=181 Identities=12% Similarity=0.013 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHH
Q 036040 101 HLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 180 (338)
.++...+.+..............|.+. +.|.++.+ .........++..++.++.|+++||+|||+.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~------------~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~ 94 (438)
T TIGR00712 28 VFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSKGE------------LGFALSAISIAYGFSKFIMGSVSDRSNPRVFL 94 (438)
T ss_pred HHHHHHHHHHHHHHHhccHHhhhHHHH-HcCCCHhH------------hHHHHHHHHHHHHHhhhccchhhhccCCceeh
Confidence 334444444444444444555566554 45777765 33466777788888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHH
Q 036040 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIG 260 (338)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~ 260 (338)
..+.++.+++.++....... .+....+.+..++.+.+.....+.....+.|.+|++.|++++|+.+....+++.++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~ 170 (438)
T TIGR00712 95 PAGLILSAAVMLLMGFVPWA----TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIP 170 (438)
T ss_pred HHHHHHHHHHHHHHhccccc----cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHH
Confidence 88877777776665443210 01122233333334443333445555677899999999999999999999999998
Q ss_pred HHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccC
Q 036040 261 AFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEP 310 (338)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~ 310 (338)
+.+.+...+ ...+|+..|++.++++++..+..+ ++||+
T Consensus 171 ~~l~~~~~~------------~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 171 PLLVLLGMA------------WFNDWHAALYFPAICAIIVALFAFAMMRDT 209 (438)
T ss_pred HHHHHHHHH------------HhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 888776542 346899999988888777655444 66664
No 89
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.51 E-value=1e-12 Score=112.86 Aligned_cols=168 Identities=17% Similarity=0.131 Sum_probs=114.8
Q ss_pred HHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHH
Q 036040 105 TASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIG 183 (338)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~ 183 (338)
..+..++...+.|....|...++++ .|++.+. ..+....++++.++|+.++|++.|| +.|+.+...
T Consensus 216 ~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~------------vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~ 282 (394)
T COG2814 216 GLLATFLFMTGHFALYTYIRPFLESVAGFSVSA------------VSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAA 282 (394)
T ss_pred HHHHHHHHHcchhhhHHhHHHHHHHccCCCHhH------------HHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHH
Confidence 3344444455566666666666665 5776654 4447778899999999999999999 888888887
Q ss_pred HHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHH
Q 036040 184 FFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFG 263 (338)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~ 263 (338)
..+..+..+.+.+... +....+....+.++.............++ .-++.+..+.++.....++|...|..+
T Consensus 283 ~~l~a~~~l~l~~~~~-------~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~l 354 (394)
T COG2814 283 LLLLALALLALTFTGA-------SPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAAL 354 (394)
T ss_pred HHHHHHHHHHHHHhcc-------hHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766655442 12222222222222222222222233444 335788999999999999999999999
Q ss_pred HHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheee
Q 036040 264 FLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFL 306 (338)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (338)
.+.+. +++|+....+..++..++++++.++
T Consensus 355 GG~v~-------------~~~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 355 GGLVL-------------DALGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred HHHHH-------------HhhchHHHHHHHHHHHHHHHHHHHH
Confidence 99998 5689999988888888888777653
No 90
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.50 E-value=8.9e-14 Score=126.18 Aligned_cols=189 Identities=10% Similarity=-0.010 Sum_probs=129.7
Q ss_pred hhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhc
Q 036040 96 RRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIG 175 (338)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 175 (338)
|..+..+....+.++.....-..+....|.+.+++|+++.+ .........++..++.+++|+++||+|
T Consensus 25 ~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~------------~g~~~s~~~~~~~~~~~~~G~l~Dr~g 92 (467)
T PRK09556 25 KPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTE------------LGMIGLGFSITYGVGKTLVGYYADGKN 92 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHH------------HHHHHHHHHHHHHHHHhhhhhHhhccC
Confidence 33334455555555555566666777788888998887765 334566677888889999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHH
Q 036040 176 RVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKA 255 (338)
Q Consensus 176 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~ 255 (338)
||+++..+.++.++..++++...... .+....+++..++.+.+.....+....+++|++|++.|++++|+......+
T Consensus 93 ~r~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~l 169 (467)
T PRK09556 93 TKQFLPFLLILSAICMLGFGASLGSG---SVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNL 169 (467)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccch
Confidence 99999988888777776666532111 122344444555555554445566778899999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-eccc
Q 036040 256 GAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPE 309 (338)
Q Consensus 256 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e 309 (338)
|.++++.+...+.... ...+|+..|.+.+++.++..+..+ +.++
T Consensus 170 G~~l~~~i~~~~~~~~----------~~~~~~~~f~~~g~~~~~~~i~~~~~~~~ 214 (467)
T PRK09556 170 GGAGAGGVALWGANYF----------FDGHVIGMFIFPSIIALIIGFIGLRYGSD 214 (467)
T ss_pred hhhHHHHHHHHHHHhh----------ccCcchhHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999988877665210 012578778777766665544444 4443
No 91
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.50 E-value=3.3e-13 Score=118.91 Aligned_cols=148 Identities=16% Similarity=0.182 Sum_probs=90.0
Q ss_pred HHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhch-HHHHHH
Q 036040 105 TASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGR-VTIQLI 182 (338)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~ 182 (338)
..+..+......++...+.|.++++ .|+++.+ .........++.+++.++.+++.||.++ |+....
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~ 288 (379)
T TIGR00881 221 ISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEK------------ASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLA 288 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------------HHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHH
Confidence 3344444455556677788888765 5666543 3446667778889999999999998643 332222
Q ss_pred HHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHH
Q 036040 183 GFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAF 262 (338)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~ 262 (338)
. .........+.... .... ..........+..+....+..+....+.+|.+|++.|+++.|+.+....+|+.++|.
T Consensus 289 ~-~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~ 364 (379)
T TIGR00881 289 V-FFMALIIVSLLVYW--LNPA-ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGL 364 (379)
T ss_pred H-HHHHHHHHHHHHHh--cCcc-hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhh
Confidence 1 11111111111111 0000 112222222333333333444445567899999999999999999999999999999
Q ss_pred HHHHhh
Q 036040 263 GFLYAA 268 (338)
Q Consensus 263 ~~~~~~ 268 (338)
+.+.+.
T Consensus 365 ~~g~l~ 370 (379)
T TIGR00881 365 PLGYLA 370 (379)
T ss_pred hHHHHH
Confidence 999998
No 92
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.49 E-value=6e-13 Score=118.77 Aligned_cols=133 Identities=11% Similarity=0.072 Sum_probs=96.4
Q ss_pred HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeee
Q 036040 152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFI 231 (338)
Q Consensus 152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (338)
...+..++.+++.++.|+++||+|||+.+..+.....+..+...... + .....+..++.+.+.....+...+
T Consensus 263 ~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~g~~~~~~~~~~~~ 334 (408)
T PRK09874 263 IASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQ-------T-PLQLGILRFLLGAADGALLPAVQT 334 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhc-------c-HHHHHHHHHHHHhhhHhhHHHHHH
Confidence 34445667778888899999999999998888766655554433322 1 222222333333333344455556
Q ss_pred eecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040 232 VPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF 305 (338)
Q Consensus 232 ~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (338)
++.+..|++.|++.+++.+....+|..++|.+.+.+. +..||+..|.+.+++.+++.++.+
T Consensus 335 ~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~-------------~~~g~~~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 335 LLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAIS-------------ANYGFRAVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred HHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHH-------------hhcchhHHHHHHHHHHHHHHHHHH
Confidence 6678889999999999999999999999999999987 677899999988888888777665
No 93
>PRK15075 citrate-proton symporter; Provisional
Probab=99.49 E-value=1.2e-12 Score=117.61 Aligned_cols=185 Identities=14% Similarity=-0.006 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHH
Q 036040 101 HLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 180 (338)
.....++.+++.......+....|.+.++++.++.+.+. ...+........++..++.++.|+++||+|||+.+
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l 89 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFAS------LMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGL 89 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHH------HHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHH
Confidence 345566677777778888888999999998877655110 00111122233444457888999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHH
Q 036040 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIG 260 (338)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~ 260 (338)
+.+.++.+++.++.++...+..........+++..++.+.+.....+....+++|++|++.|++++++.....++|..++
T Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g 169 (434)
T PRK15075 90 IVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFA 169 (434)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHH
Confidence 99998888888877765432100000011234445555555544455566789999999999999999998888888877
Q ss_pred HHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHH
Q 036040 261 AFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAV 296 (338)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (338)
+.+.+.+.....+ ...+..||+.+|++.+..
T Consensus 170 ~~~g~~l~~~~~~-----~~~~~~gWr~~f~~~~~~ 200 (434)
T PRK15075 170 ALLGYLLNQWLSP-----AQMAEWGWRIPFLIGCLI 200 (434)
T ss_pred HHHHHHHHHhCCH-----HHHhccchHHHHHHHHHH
Confidence 7776665311100 000367999999864433
No 94
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.49 E-value=8.7e-13 Score=117.00 Aligned_cols=161 Identities=12% Similarity=0.045 Sum_probs=97.8
Q ss_pred hhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHh
Q 036040 117 FSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAI 196 (338)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 196 (338)
.....+.+.++++.|+++++ .+........+..+++.+++|++.||+|+|+.+..+.++..+..+....
T Consensus 225 ~~~~~~~~~~l~~~G~s~~~-----------ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~ 293 (390)
T TIGR02718 225 VSGFGLSKLYLVDAGWPLEW-----------IGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFA 293 (390)
T ss_pred HHHHHHhhHHHHhcCCCHHH-----------HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344567778888888765 2222333334566677889999999999999988776554332222211
Q ss_pred hhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCc-cchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 036040 197 PYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPA-RFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSK 275 (338)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 275 (338)
...... . ..............+......+..++...+..++ +.+++.+++.+....+|..++|.+.+.+.
T Consensus 294 ~~~~~~-~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~------- 364 (390)
T TIGR02718 294 QAAFWL-A-PGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLT------- 364 (390)
T ss_pred HHHccc-C-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 111000 0 1111111111221111112223334444555655 88999999999999999999999999998
Q ss_pred CCCCCCCCcchHHHHHHHHHHHHHhHhh
Q 036040 276 ADPGYPAGIGIKNTLFLLAAVNVLGLLF 303 (338)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (338)
+..|++..|...+++.+++.+.
T Consensus 365 ------~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 365 ------DRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred ------HHHccHHHHHHHHHHHHHHHHH
Confidence 5668888888777776666554
No 95
>PRK12382 putative transporter; Provisional
Probab=99.48 E-value=1.1e-12 Score=116.50 Aligned_cols=156 Identities=17% Similarity=0.069 Sum_probs=107.3
Q ss_pred hhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 036040 115 SYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLAL 194 (338)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 194 (338)
.+.....+.|.++++.+++.. ........++.+++.++.|++.||+|||+.+..+..+..+..+++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~ 296 (392)
T PRK12382 231 GFAVIGTFVSLYFASKGWAMA--------------GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLL 296 (392)
T ss_pred HHhHHHHHHHHHHHhcCCchh--------------HHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHH
Confidence 344455666777776554321 123344556667888999999999999999888777666665544
Q ss_pred HhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 036040 195 AIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKS 274 (338)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 274 (338)
.... +.. .......+.+.......+...+...|.+|++.|+++.|+.+....+|..++|.+.+.+.
T Consensus 297 ~~~~-------~~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~------ 362 (392)
T PRK12382 297 WLAP-------TAW-VALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLA------ 362 (392)
T ss_pred HHcc-------cHH-HHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 4322 112 22222222333223334445566788899999999999999999999999999999998
Q ss_pred CCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040 275 KADPGYPAGIGIKNTLFLLAAVNVLGLLFTF 305 (338)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (338)
+..||+..|.+.+++.+++.+..+
T Consensus 363 -------~~~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 363 -------TSFGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred -------HHhCchHHHHHHHHHHHHHHHHHH
Confidence 567899999988888777766554
No 96
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.48 E-value=9.2e-14 Score=122.36 Aligned_cols=166 Identities=13% Similarity=0.046 Sum_probs=118.2
Q ss_pred HHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHH
Q 036040 110 LLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTV 189 (338)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 189 (338)
.......|....+.|.+.+++|++..+ .........++..++.++.|+++||+|||+++..+.++.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~s~~~------------~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~ 80 (377)
T TIGR00890 13 CFTSGYVYTWTLLAPPLGRYFGVGVTA------------VAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGL 80 (377)
T ss_pred HHHhhHHhhhhhHHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHH
Confidence 333334667788899999998887755 44467778888889999999999999999999999888888
Q ss_pred HHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 036040 190 FMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQ 269 (338)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~ 269 (338)
+.++.++... ...+.....+.+.+.....+.....+.|.+| +.|+++.++......+|..+++.+.+.+.
T Consensus 81 ~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~- 150 (377)
T TIGR00890 81 GFTFYAIADS--------LAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVI- 150 (377)
T ss_pred HHHHHHHHHH--------HHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHH-
Confidence 8777666542 2223333333333333233334445677777 56999999999888888887766666665
Q ss_pred ccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-eccc
Q 036040 270 DQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPE 309 (338)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e 309 (338)
+..+|+..|++.+++.++..+..+ ++++
T Consensus 151 ------------~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 179 (377)
T TIGR00890 151 ------------NLEGVPAAFIYMGIIFLLVIVLGAFLIGY 179 (377)
T ss_pred ------------hcccHHHHHHHHHHHHHHHHHHHHHheec
Confidence 567999999988887777665554 4443
No 97
>PRK12382 putative transporter; Provisional
Probab=99.48 E-value=3.6e-13 Score=119.56 Aligned_cols=168 Identities=11% Similarity=-0.030 Sum_probs=110.0
Q ss_pred HHHHHHhHhhhhhhccHHHHH-HHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHH
Q 036040 107 STWLLLDVSYFSQNLFQKEIF-TAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFF 185 (338)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~ 185 (338)
+..+............+|.++ +++|+++.+ .........++..++.+++|+++||+|||+.++.+.+
T Consensus 22 ~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~------------~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~ 89 (392)
T PRK12382 22 FAVFLTYMTVGLPLPVIPLFVHHDLGFGNTM------------VGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGML 89 (392)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcCCcHHH------------HHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHH
Confidence 333444444555556666654 567887765 3446777788888899999999999999999998877
Q ss_pred HHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 036040 186 FMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFL 265 (338)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~ 265 (338)
...++.+..................+.+..++.+.+.....+...++..|.+|++.|++++++......+|..++|.+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~ 169 (392)
T PRK12382 90 ACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGL 169 (392)
T ss_pred HHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 66655433222110000001123334444444444433334445566789999999999999999888899999999998
Q ss_pred HhhhccccCCCCCCCCCCcchHHHHHHHHHHHHH
Q 036040 266 YAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVL 299 (338)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (338)
.+. ...||+..+.+..+..++
T Consensus 170 ~l~-------------~~~g~~~~~~~~~~~~~~ 190 (392)
T PRK12382 170 LLH-------------SHFGFAALALTTMVLPLL 190 (392)
T ss_pred HHH-------------hccChHHHHHHHHHHHHH
Confidence 886 567888776654444333
No 98
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.48 E-value=1.9e-13 Score=120.66 Aligned_cols=160 Identities=13% Similarity=0.115 Sum_probs=121.4
Q ss_pred hhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhh
Q 036040 119 QNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPY 198 (338)
Q Consensus 119 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~ 198 (338)
.....|.+.+++|+++.+ .........++..++.+++|+++||+|||+.+..+.++.+++..+..+..
T Consensus 10 ~~p~~~~~~~~~~~s~~~------------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~ 77 (377)
T PRK11102 10 YLPALPVIAADFGVSAGS------------VQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ 77 (377)
T ss_pred HhccHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence 446778888888887755 34466677788888999999999999999999999888887777766543
Q ss_pred hhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 036040 199 HHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADP 278 (338)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 278 (338)
. ...+.+..++.+.+.....+...+++.|.+|++.|++++++.+....+|..++|.+.+.+.
T Consensus 78 ~--------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---------- 139 (377)
T PRK11102 78 T--------IDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLL---------- 139 (377)
T ss_pred c--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 2 2233333344444444444556678899999999999999999999999999999999887
Q ss_pred CCCCCcchHHHHHHHHHHHHHhHhhee-ecccCC
Q 036040 279 GYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPN 311 (338)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~ 311 (338)
+..+|+..|++.+++.++..+... ++||++
T Consensus 140 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 140 ---VWFSWHAIFWVLALAAILAAALVFFFIPETL 170 (377)
T ss_pred ---HHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 567899999888877777666554 667654
No 99
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.48 E-value=1.9e-12 Score=112.73 Aligned_cols=171 Identities=23% Similarity=0.273 Sum_probs=131.0
Q ss_pred HHHHHHHHHHhHhhhhhhccHHHHHHHc-cCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHH-HH
Q 036040 103 LGTASTWLLLDVSYFSQNLFQKEIFTAV-GWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVT-IQ 180 (338)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~-~~ 180 (338)
+...+..+...........+.|.+.++. |.++.+ .........++.+++.++.+++.||+|||+ .+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 245 (352)
T cd06174 178 LLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAE------------AGLLLSLFGLGGILGALLGGLLSDRLGRRRLLL 245 (352)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3444455556666777778888888774 555433 445677778888999999999999999999 88
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHH
Q 036040 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIG 260 (338)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~ 260 (338)
..+..+..++.+....... .........+.+.+.....+....+..|..|++.|++.+|+.+....++..++
T Consensus 246 ~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 317 (352)
T cd06174 246 LIGLLLAALGLLLLALAPS--------LALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALG 317 (352)
T ss_pred HHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777777766655431 23333444444555555667788899999999999999999999999999999
Q ss_pred HHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheee
Q 036040 261 AFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFL 306 (338)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (338)
+.+.+.+. +..+++..+.+.+++.+++.+..++
T Consensus 318 ~~i~g~l~-------------~~~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 318 PLLAGLLL-------------DTGGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred HHHHHHHh-------------cccCcchHHHHHHHHHHHHHHHhee
Confidence 99999997 5778999999988888888776654
No 100
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.48 E-value=1.6e-12 Score=114.87 Aligned_cols=160 Identities=11% Similarity=-0.029 Sum_probs=112.4
Q ss_pred HHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHH
Q 036040 110 LLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTV 189 (338)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 189 (338)
++..........+.|.++++.|.++.. .+.......++.+++..+.+++.||+|+|+++.++.+...+
T Consensus 215 ~l~~~~~~~~~~~~~~~l~~~g~s~~~------------~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~ 282 (382)
T TIGR00902 215 CLIQGAHAAYYGFSAIYWQAAGISASA------------TGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVG 282 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHhH------------HHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHH
Confidence 333444555666788888888887755 23345567888888889999999999999999999888887
Q ss_pred HHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHH-HHHHHHHHHHHHHHHhh
Q 036040 190 FMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAA-AGKAGAIIGAFGFLYAA 268 (338)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~-~~~~g~~~~~~~~~~~~ 268 (338)
...++.+... ...+....++.+.......+....++++. |++.|+++.++.+. ...+|..+++.+.+.+.
T Consensus 283 ~~~~~~~~~~--------~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~ 353 (382)
T TIGR00902 283 RWAIIGAIEA--------FPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIY 353 (382)
T ss_pred HHHHHHhHhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776665432 23333333433333333344556677887 99999999999864 55689999999999998
Q ss_pred hccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhe
Q 036040 269 QDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFT 304 (338)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (338)
+..|. ..|++.+++.++++++.
T Consensus 354 -------------~~~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 354 -------------PTLGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred -------------HhccH-HHHHHHHHHHHHHHHHH
Confidence 46675 56667777777665543
No 101
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.48 E-value=4.4e-13 Score=117.83 Aligned_cols=184 Identities=16% Similarity=0.166 Sum_probs=121.6
Q ss_pred HHHHHHHHHhHhhhhhhccHHH-HHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHH
Q 036040 104 GTASTWLLLDVSYFSQNLFQKE-IFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLI 182 (338)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~ 182 (338)
...+..+......+....+.|. +.+++|+++.+ .........++..++.+++|+++||+|||+.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 72 (366)
T TIGR00886 5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQ------------LGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTL 72 (366)
T ss_pred HHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHH------------hhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 3445555566677778888885 66778888766 3346777888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHH
Q 036040 183 GFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAF 262 (338)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~ 262 (338)
+.++..++.+++.+... ....+.+..++.+... +..+....+++|.+|++.|+++.++.....++|..+++.
T Consensus 73 ~~~~~~i~~~~~~~~~~-------~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 144 (366)
T TIGR00886 73 SLLLLAIPCLWAGLAVQ-------SYSVLLLLRLFIGIAG-GSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQF 144 (366)
T ss_pred HHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHhc-hhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHH
Confidence 98888887776665430 1333333444444333 333445678899999999999999999888888888887
Q ss_pred HHHHhhhccccCCCCCCCCCCcchHHHH-HHHHHHHHHhHhhee-ecccC
Q 036040 263 GFLYAAQDQDKSKADPGYPAGIGIKNTL-FLLAAVNVLGLLFTF-LVPEP 310 (338)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~e~ 310 (338)
+.+.+.......+ +.....+|++.+ +..+++..+..++.+ +.+|+
T Consensus 145 i~~~l~~~~~~~~---~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (366)
T TIGR00886 145 VMPPIIGSLIFGA---GLPAHLAWGWAFVIVPAGILLLPALLIFFVGADT 191 (366)
T ss_pred HHHHHHHHHHhcc---cccccccccchhHHHHHHHHHHHHHHHHHhcccC
Confidence 7766653110000 000234788887 433444433333333 44543
No 102
>PRK11043 putative transporter; Provisional
Probab=99.47 E-value=1e-12 Score=116.95 Aligned_cols=159 Identities=14% Similarity=0.066 Sum_probs=113.2
Q ss_pred hhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhh
Q 036040 119 QNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPY 198 (338)
Q Consensus 119 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~ 198 (338)
.....|.+.+++|.++.+ .........++..++.+++|+++||+|||+.+..+.++..++.++..+..
T Consensus 25 ~~p~~~~i~~~~~~s~~~------------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 92 (401)
T PRK11043 25 YLPAFKAIQADLQTSASA------------VSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE 92 (401)
T ss_pred HHhhHHHHHHHHCCCHHH------------HHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 334455566777777654 44466777888889999999999999999999988877776666655433
Q ss_pred hhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 036040 199 HHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADP 278 (338)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 278 (338)
. ...+....++.+.+.....+....++.|.+|++.|+...+..+....++..++|.+.+.+.
T Consensus 93 ~--------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~---------- 154 (401)
T PRK11043 93 S--------AAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLL---------- 154 (401)
T ss_pred C--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 1 2223333333333222223334466789999999999999988888899999999999887
Q ss_pred CCCCCcchHHHHHHHHHHHHHhHhheeecccC
Q 036040 279 GYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEP 310 (338)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 310 (338)
+..+|+..|++.+++.++..+..++.+|.
T Consensus 155 ---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (401)
T PRK11043 155 ---NHFGWQAIFATLFAITLLLILPTLRLKPS 183 (401)
T ss_pred ---hcCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 57799999988887777766655544443
No 103
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.47 E-value=6e-13 Score=118.41 Aligned_cols=180 Identities=11% Similarity=-0.049 Sum_probs=120.0
Q ss_pred HHHHHHHHhHhhhhhhccHHHHH-HHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHH
Q 036040 105 TASTWLLLDVSYFSQNLFQKEIF-TAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIG 183 (338)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~ 183 (338)
..+..+............+|.++ +++|.++.+ .........++..++.++.|+++||+|||++++.+
T Consensus 20 l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~------------~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~ 87 (399)
T PRK05122 20 IVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFL------------AGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFG 87 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHH------------HHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHH
Confidence 34444444444555556677655 456777654 44567777888888999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHH
Q 036040 184 FFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFG 263 (338)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~ 263 (338)
.++.+++.+.+................++...++.+.+.....+....+..|.+|++.|++++++......+|..+++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l 167 (399)
T PRK05122 88 LCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPL 167 (399)
T ss_pred HHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHH
Confidence 87776665544433210000001122344444445544444455555667899999999999999988888899999999
Q ss_pred HHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeeccc
Q 036040 264 FLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPE 309 (338)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 309 (338)
.+.+. +..||+..+++.++..++..+.....|+
T Consensus 168 ~~~l~-------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 200 (399)
T PRK05122 168 GVLLY-------------HWGGLAGLGLLIMLLALLGLLLARPRPA 200 (399)
T ss_pred HHHHH-------------HcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99887 5778998887766665554444333343
No 104
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.46 E-value=3.3e-12 Score=113.73 Aligned_cols=173 Identities=14% Similarity=0.122 Sum_probs=111.4
Q ss_pred HHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHH-HH
Q 036040 105 TASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQL-IG 183 (338)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~-~~ 183 (338)
..+..++....+++...+.|.++++.|+++.+ .........++.+++.++.|+++||+|||+.+. .+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~ 294 (402)
T TIGR00897 227 GGMVRIINTIGLFGFAVFLPMFVAELGFSTSE------------WLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFG 294 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhH------------HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Confidence 33444555667788888999999888887754 233455567788899999999999999888764 23
Q ss_pred HHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHH
Q 036040 184 FFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFG 263 (338)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~ 263 (338)
.+.+.++.+.+....... .++ ........+..+....+..+ ......|..| +.|++++|+.+....+++.++|.+
T Consensus 295 ~l~~~~~~~~l~~~~~~~--~~~-~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i 369 (402)
T TIGR00897 295 GVGCGIFTLALYYIPQHF--GHS-FAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAI 369 (402)
T ss_pred HHHHHHHHHHHHHHHHcc--CCc-HHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHH
Confidence 233333322222211000 011 22222222222222222223 2344567655 589999999999999999999999
Q ss_pred HHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeec
Q 036040 264 FLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLV 307 (338)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (338)
.+.+. +..|+...+++.+++.+++.+...++
T Consensus 370 ~g~l~-------------~~~g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 370 AVLFI-------------GFFGAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHH-------------hhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 99998 56788999998888877776655443
No 105
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.46 E-value=5.7e-13 Score=120.35 Aligned_cols=158 Identities=13% Similarity=0.063 Sum_probs=111.6
Q ss_pred hhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 036040 115 SYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLAL 194 (338)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 194 (338)
..++...+.|.+.+++|+++.+ .........++..++.++.|+++||+|||++++.+.++.++..++.
T Consensus 34 ~~~~~~~~~~~i~~~~g~s~~~------------~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 101 (455)
T TIGR00892 34 FPKAVTVFFKELQQIFQATYSE------------TAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILA 101 (455)
T ss_pred hhcchhhhHHHHHHHhCcchhH------------HHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHH
Confidence 3456677889998998888766 2224444555556778889999999999999999887777776666
Q ss_pred HhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 036040 195 AIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKS 274 (338)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 274 (338)
++... .........++.+.+.....+....++.+.+| +.|+++.|+.+....+|..++|.+.+.+.
T Consensus 102 ~~~~~-------~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~------ 167 (455)
T TIGR00892 102 SFSSN-------VIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLF------ 167 (455)
T ss_pred HHhhh-------HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHH------
Confidence 55431 12222222233333222222344466778886 78999999999999999999999999887
Q ss_pred CCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040 275 KADPGYPAGIGIKNTLFLLAAVNVLGLLFTF 305 (338)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (338)
+..||+.+|++.+++.+++.+..+
T Consensus 168 -------~~~gwr~~f~~~~~~~~~~~v~~~ 191 (455)
T TIGR00892 168 -------ESFGWRGSFLILGGLLLHCCVCGA 191 (455)
T ss_pred -------HHhChHHHHHHHHHHHHHHHHHHH
Confidence 577999999998887776655444
No 106
>PRK09952 shikimate transporter; Provisional
Probab=99.45 E-value=3e-12 Score=115.23 Aligned_cols=153 Identities=10% Similarity=-0.011 Sum_probs=104.7
Q ss_pred HHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeee
Q 036040 154 LVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVP 233 (338)
Q Consensus 154 ~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (338)
....++..+|+++.|+++||+|||+.+..+.++.+++.++.++...+..........++...++.+.+..+..+....++
T Consensus 71 ~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~ 150 (438)
T PRK09952 71 GVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLA 150 (438)
T ss_pred HHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHH
Confidence 34556778899999999999999999999999988888888776532100000011344455666666666666677899
Q ss_pred cccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCC
Q 036040 234 AEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPN 311 (338)
Q Consensus 234 ~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 311 (338)
.|.+|++.|+...+.......+|..+++.+...+....+. .....+|||..|++.+++.++...+....||++
T Consensus 151 ~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~-----~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~ 223 (438)
T PRK09952 151 VESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTD-----EQFLSWGWRIPFLFSIVLVLIALWVRNGMEESA 223 (438)
T ss_pred HHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-----HHhhccChHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 9999999999999988888888888887766655321100 000257999999887766555433322566654
No 107
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.45 E-value=1.7e-12 Score=115.55 Aligned_cols=136 Identities=13% Similarity=0.046 Sum_probs=81.1
Q ss_pred HHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHH---HHHHhhccCccceee
Q 036040 154 LVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYA---LTFFFANFGPNSTTF 230 (338)
Q Consensus 154 ~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 230 (338)
....++.+++.++++++.||+|||+.+..+.....+..+.+...... .++......... +..+.......+...
T Consensus 253 ~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 329 (402)
T PRK11902 253 TLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVT---PKHLWTMALAIGIENLCGGMGTAAFVALLM 329 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677889999999999999998877665554443333221100 011121121111 122222333344455
Q ss_pred eeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeeccc
Q 036040 231 IVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPE 309 (338)
Q Consensus 231 ~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 309 (338)
.++++.+|.+.+ ++......++...++.+.+.+. +..||+..|.+.++++++++++....+.
T Consensus 330 ~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~-------------~~~G~~~~f~~~~~~~~~~~~~~~~~~~ 391 (402)
T PRK11902 330 ALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLV-------------EAYGWPGFYLMTVVIALPGLALLWLMRG 391 (402)
T ss_pred HhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHH-------------HHhChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 667777775544 5555555667776667888887 6789999998888888777666554443
No 108
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.45 E-value=9.1e-13 Score=114.79 Aligned_cols=167 Identities=18% Similarity=0.164 Sum_probs=128.7
Q ss_pred HHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHH
Q 036040 106 ASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFF 185 (338)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~ 185 (338)
.+..+......+......|.+.++.|.++.+ .........++.+++.++.|+++||+|||+.+..+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~ 72 (352)
T cd06174 5 FLGFFLSGLDRGLLSPALPLLAEDLGLSASQ------------AGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLL 72 (352)
T ss_pred HHHHHHHHHhhhhhHhhHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHH
Confidence 3445556667777788888888887776654 4446777788888999999999999999999999988
Q ss_pred HHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 036040 186 FMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFL 265 (338)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~ 265 (338)
+..++.+...... + ........++.+.......+....+..|.+|++.|+++.++......+|..+++.+.+
T Consensus 73 ~~~~~~~~~~~~~-------~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 144 (352)
T cd06174 73 LFALGSLLLAFAS-------S-LWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGG 144 (352)
T ss_pred HHHHHHHHHHHhc-------c-HHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 8888777766543 1 3344444555555555556777788999999999999999999999999999999999
Q ss_pred HhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040 266 YAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF 305 (338)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (338)
.+. +..+|+..+++.+++.++..+...
T Consensus 145 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~ 171 (352)
T cd06174 145 LLA-------------ESLGWRWLFLILAILGLLLALLLL 171 (352)
T ss_pred HHH-------------HHhhHHHHHHHHHHHHHHHHHHHH
Confidence 987 456788888887777666655443
No 109
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.44 E-value=2.7e-12 Score=113.93 Aligned_cols=193 Identities=11% Similarity=0.063 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHhHhhhhhhccHHHHHH-HccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHH
Q 036040 101 HLLGTASTWLLLDVSYFSQNLFQKEIFT-AVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTI 179 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~ 179 (338)
.++...+.++......+......+.+.+ ++|+++.+ .....++..++..++.+..|++.||+|.|++
T Consensus 35 ~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q------------~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v 102 (462)
T PRK15034 35 NLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQ------------LFLLTALPSVSGALLRVPYSFMVPIFGGRRW 102 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHH
Confidence 4455555555556666666666666655 67887766 2335555666666777888999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHH
Q 036040 180 QLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAII 259 (338)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~ 259 (338)
+.++.++.++..+..++... +..++...+.+..++.+.. .+..+.....+++++|++.||++.|+....+++|..+
T Consensus 103 ~~~~~ll~~i~~~~~~~a~~---~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l 178 (462)
T PRK15034 103 TVFSTAILIIPCVWLGIAVQ---NPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSV 178 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHc---ccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHH
Confidence 99998888887777765420 0112234444444444443 3345667778999999999999999998888888887
Q ss_pred HHHHHHHhhh-----ccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-eccc
Q 036040 260 GAFGFLYAAQ-----DQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPE 309 (338)
Q Consensus 260 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e 309 (338)
++++.+.+.. ............+..+++.+.++.+.+.++..++.+ +.++
T Consensus 179 ~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~ 234 (462)
T PRK15034 179 MQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMND 234 (462)
T ss_pred HHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7777665431 000000000001245688888778777776666655 4444
No 110
>TIGR00898 2A0119 cation transport protein.
Probab=99.44 E-value=4.6e-13 Score=122.93 Aligned_cols=158 Identities=15% Similarity=0.157 Sum_probs=118.9
Q ss_pred ccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhh
Q 036040 121 LFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHH 200 (338)
Q Consensus 121 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~ 200 (338)
.+.|.+.++++++.+. ........+...++.+++.++.|+++||+|||++++++.++.+++.++.++...
T Consensus 110 ~~~~~i~~e~~l~c~~---------~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~- 179 (505)
T TIGR00898 110 TFSSTIVTEWDLVCED---------AWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPN- 179 (505)
T ss_pred cccccEEEEecceech---------HHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHccc-
Confidence 3445555566665211 012445777788899999999999999999999999998888877777665442
Q ss_pred cccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 036040 201 WIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGY 280 (338)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 280 (338)
...+.+..++.+++..+..+...+++.|.+|++.|+.+.++......+|.++++.+...+.
T Consensus 180 -------~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~------------ 240 (505)
T TIGR00898 180 -------YTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP------------ 240 (505)
T ss_pred -------HHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh------------
Confidence 3445555566666666667788899999999999999999998888888888888766553
Q ss_pred CCCcchHHHHHHHHHHHHHhHhheeecccCC
Q 036040 281 PAGIGIKNTLFLLAAVNVLGLLFTFLVPEPN 311 (338)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 311 (338)
+|+..+++.+++.++..+..+++||+.
T Consensus 241 ----~wr~~~~~~~i~~~~~~~~~~~~~esp 267 (505)
T TIGR00898 241 ----DWRWLQLAVSLPTFLFFLLSWFVPESP 267 (505)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 399999988888777766666788864
No 111
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.44 E-value=1.2e-12 Score=118.02 Aligned_cols=112 Identities=13% Similarity=0.104 Sum_probs=78.6
Q ss_pred HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeee
Q 036040 152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFI 231 (338)
Q Consensus 152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (338)
......++.+++.+++++++||+|+|+.+..+.++.+++.+.+.+.. ++ ........++.+++.....+..++
T Consensus 262 ~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 262 MGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG------SN-LPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc------hh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556788888999999999999999999888777666655544321 11 222222223333333333455667
Q ss_pred eecccCC-------ccchhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 036040 232 VPAEIFP-------ARFRSTCHGISAAAGKAGAIIGAFGFLYAAQD 270 (338)
Q Consensus 232 ~~~e~~p-------~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 270 (338)
+.+|..| ++.+|.+.|+.++...+|..+++.+.+.+.+.
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~ 380 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGI 380 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777764 56789999999999999999999999998754
No 112
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.44 E-value=1.5e-12 Score=115.64 Aligned_cols=169 Identities=14% Similarity=0.093 Sum_probs=118.4
Q ss_pred HHHHHhHhhhhhhccHHHHH-HHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHH
Q 036040 108 TWLLLDVSYFSQNLFQKEIF-TAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFF 186 (338)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~ 186 (338)
..++.....+....+.+.++ ++.|+++.+ .+.......+...+..+++|+++||+|||++++.+.+.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------------~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~ 85 (400)
T PRK11646 18 DNMLVVLGFFVVFPLISIRFVDQLGWAAVM------------VGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLM 85 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHH------------HHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHH
Confidence 33444444555556666655 456777654 33355555666666788999999999999999999888
Q ss_pred HHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 036040 187 MTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLY 266 (338)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~ 266 (338)
..+.++++.... + ...+....++.+.......+...+++.|.+|++.|+++.|+......+|..++|.+.+.
T Consensus 86 ~~~~~~~~~~~~-------~-~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~ 157 (400)
T PRK11646 86 RAAGFATMAIAH-------E-PWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSW 157 (400)
T ss_pred HHHHHHHHHHhc-------c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777765543 1 23333334444443333445556778999999999999999999999999999999999
Q ss_pred hhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccC
Q 036040 267 AAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEP 310 (338)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~ 310 (338)
+. ..+|+..|++.++..++..+... +.||.
T Consensus 158 l~--------------~~g~~~~f~~~~~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 158 LL--------------QYDFRLVCATGAVLFVLAAAFNAWLLPAY 188 (400)
T ss_pred HH--------------HhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 85 45899999887777666554433 55653
No 113
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.44 E-value=3.9e-12 Score=108.35 Aligned_cols=178 Identities=19% Similarity=0.199 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHH
Q 036040 102 LLGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180 (338)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 180 (338)
.+.+++.++.....+-+++.++|.++++ .|.++.+ +........+.+.+..+++|+++||+|.++++
T Consensus 220 ~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~------------Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~ 287 (417)
T COG2223 220 TWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVT------------AGLIAFLFPLIGALARPLGGWLSDRIGGRRVT 287 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh------------HHHHHHHHHHHHHHHHhccchhhhhccchhHH
Confidence 3456667777777888889999999887 5766654 33466666666677889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHH
Q 036040 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIG 260 (338)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~ 260 (338)
.+....++++..+.++.........+.......+.....+.+.| ....+.++..++|.+. |.+.|+....+.+|+++-
T Consensus 288 ~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~G-nGsvfk~Ip~if~~~~-G~v~G~vga~G~lGGf~l 365 (417)
T COG2223 288 LAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLG-NGSVFKMIPVIFPKET-GAVTGIVGAIGGLGGFFL 365 (417)
T ss_pred HHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccC-cchheeechHHHHhhh-hHHHHHHHHhccccccch
Confidence 99988888888877765422111122233333333333333333 3456788898998755 888999999999999999
Q ss_pred HHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040 261 AFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF 305 (338)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (338)
|...+...+ ....+..+|+++..+.+++.++.+
T Consensus 366 p~~~g~~~~------------~tg~~~~~f~~~~~~~~~a~v~~~ 398 (417)
T COG2223 366 PLAFGVSLD------------LTGSYTGAFMLLLAFYLVALVLTW 398 (417)
T ss_pred hHHHHHHHH------------hcccHHHHHHHHHHHHHHHHHHHH
Confidence 999999984 223488999999999888888766
No 114
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.43 E-value=2.1e-12 Score=114.64 Aligned_cols=156 Identities=16% Similarity=-0.009 Sum_probs=118.4
Q ss_pred HhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 036040 114 VSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLA 193 (338)
Q Consensus 114 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 193 (338)
..++......|.+.+++|++..+ .........++..++.++.|+++||+|||+++..+..+.+++.++
T Consensus 23 ~~~~~~~~~lp~i~~~~~~s~~~------------~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~ 90 (393)
T PRK09705 23 PLLTSVGPLLPQLRQASGMSFSV------------AALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALM 90 (393)
T ss_pred hhhhccchhHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 34466778899999999888765 444667777788889999999999999999999999999999988
Q ss_pred HHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 036040 194 LAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDK 273 (338)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 273 (338)
.++... ...++...++.+.+.....+....++.+.+| +.|+.++|+.......|..+++.+.+.+.+
T Consensus 91 ~~~a~~--------~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~---- 157 (393)
T PRK09705 91 RELYPQ--------SALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQ---- 157 (393)
T ss_pred HHHCcc--------hHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 887653 2234444555555444445555667888887 779999999999888999999999988863
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHHHHhHh
Q 036040 274 SKADPGYPAGIGIKNTLFLLAAVNVLGLL 302 (338)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (338)
...+|+..+.+.++..++..+
T Consensus 158 --------~~~~w~~~~~~~~~~~~~~~~ 178 (393)
T PRK09705 158 --------HSETWYQTLAWWALPAVVALF 178 (393)
T ss_pred --------hcCCHHHHHHHHHHHHHHHHH
Confidence 234899887766655544433
No 115
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.43 E-value=3.6e-12 Score=116.24 Aligned_cols=168 Identities=13% Similarity=0.015 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHhHhhhhhhccHHHHHH-HccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHh-hchHHH
Q 036040 102 LLGTASTWLLLDVSYFSQNLFQKEIFT-AVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDI-IGRVTI 179 (338)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~ 179 (338)
++..++..++....+|+...+++.+++ ++|+++.+ +...............+++|+++|| +|||+.
T Consensus 23 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~------------a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~ 90 (500)
T PRK09584 23 FYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEAD------------SITLFSSFSALVYGLVAIGGWLGDKVLGTKRV 90 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 445556667777888999999999885 47776644 1222222222223334578999999 599999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccc--hhhhHHHHHHHHHHHH
Q 036040 180 QLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARF--RSTCHGISAAAGKAGA 257 (338)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--R~~~~~~~~~~~~~g~ 257 (338)
++++.++.+++..++.+.. +....+.+...+.+.+.+...+...+++.|.+|++. |+.+.++.++..++|.
T Consensus 91 ~~~g~~~~~ig~~l~~~~~-------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~ 163 (500)
T PRK09584 91 IMLGAIVLAIGYALVAWSG-------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGS 163 (500)
T ss_pred HHHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHH
Confidence 9999888887766665432 112222222333333344445566678899998653 4567888899999999
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhH
Q 036040 258 IIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGL 301 (338)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (338)
.++|.+.+++. +..||+..|.+.++..+++.
T Consensus 164 ~~gp~i~g~l~-------------~~~g~~~~F~i~~i~~~i~~ 194 (500)
T PRK09584 164 FFSMLATPWLA-------------AKYGWSVAFALSVVGMLITV 194 (500)
T ss_pred HHHHHHHHHHH-------------HhhCHHHHHHHHHHHHHHHH
Confidence 99999999997 57799999988775444443
No 116
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.42 E-value=6.5e-13 Score=118.90 Aligned_cols=170 Identities=12% Similarity=-0.028 Sum_probs=116.2
Q ss_pred HhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 036040 114 VSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLA 193 (338)
Q Consensus 114 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 193 (338)
..........|.+.++.+.++.+ .........++.+++.++.|+++||+|||+++..+.++.+++...
T Consensus 31 ~~~~~~~~~~~~~~~~~~~s~~~------------~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~ 98 (417)
T PRK10489 31 FGLGLLGVAVPVQIQMMTGSTLQ------------VGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIG 98 (417)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHH------------HHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHH
Confidence 33444556677777776655533 455777778888899999999999999999988877666665554
Q ss_pred HHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 036040 194 LAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDK 273 (338)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 273 (338)
+...... ..+....+.+..++.+.+.....+....++.|.+|++.|+++.++.+....+|..++|.+.+.+.
T Consensus 99 ~~~~~~~---~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~----- 170 (417)
T PRK10489 99 LALNAFL---PEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLI----- 170 (417)
T ss_pred HHHHHHc---CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH-----
Confidence 4332100 01222333333333333322223445567899999999999999999999999999999999887
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCC
Q 036040 274 SKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPN 311 (338)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 311 (338)
+..+|++.+++.++..+++.+..+.+|+++
T Consensus 171 --------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (417)
T PRK10489 171 --------AAGGVAWNYGLAAAGTFITLLPLLRLPALP 200 (417)
T ss_pred --------HHHhhHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 456888888877776666665555666653
No 117
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.41 E-value=3e-12 Score=113.97 Aligned_cols=190 Identities=11% Similarity=0.004 Sum_probs=128.1
Q ss_pred HHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHH
Q 036040 103 LGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLI 182 (338)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~ 182 (338)
+.++..++...+.........|.+.+++|.++.+ .........++.+++++..|++.||+|||+.++.
T Consensus 6 ~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~------------~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~ 73 (410)
T TIGR00885 6 ALITSLFALWGFANDITNPMVPQFQQAFTLTAFQ------------AALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILL 73 (410)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 3444555555555555667888888888887755 4557788889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHH
Q 036040 183 GFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAF 262 (338)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~ 262 (338)
+.++.+++.++...... .+....+....++.+.+.....+....++.+..|++.|++..++.+....+|..+++.
T Consensus 74 g~~l~~~g~~l~~~~~~-----~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~ 148 (410)
T TIGR00885 74 GLFLYALGAFLFWPAAE-----IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMV 148 (410)
T ss_pred HHHHHHHHHHHHHHHHh-----hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888887766543321 0123333444444444444444555567788899999999999999999999999999
Q ss_pred HHHHhhhccccC-------CCCCC------CCCCcchHHHHHHHHHHHHHhHhhee--eccc
Q 036040 263 GFLYAAQDQDKS-------KADPG------YPAGIGIKNTLFLLAAVNVLGLLFTF--LVPE 309 (338)
Q Consensus 263 ~~~~~~~~~~~~-------~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~e 309 (338)
+.+.+....... ...+. ..+..+|+.+|++.+++.++..++.. ..||
T Consensus 149 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~ 210 (410)
T TIGR00885 149 VAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPA 210 (410)
T ss_pred HHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 988775311000 00000 00124699999888877666544433 3454
No 118
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.41 E-value=1.9e-12 Score=114.81 Aligned_cols=154 Identities=10% Similarity=0.054 Sum_probs=110.6
Q ss_pred ccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhh
Q 036040 121 LFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHH 200 (338)
Q Consensus 121 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~ 200 (338)
...+.+.++++.++.. ..+......+...++.+++|+++||+|||++++++.++..++.+++....
T Consensus 24 ~~~~~~~~~~~~s~~~------------~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~-- 89 (393)
T PRK11195 24 FAAIALLKELHYPDWS------------QPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGI-- 89 (393)
T ss_pred HHHHHHHHHcCCcHHH------------HHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHH--
Confidence 3344455666655433 34466667778888899999999999999999999888777665544332
Q ss_pred cccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 036040 201 WIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGY 280 (338)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 280 (338)
+ . .+..++.+.+.....|...+++.|++|++.|+++.|+......++..+||.+.+.+.+
T Consensus 90 -----~-~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~----------- 149 (393)
T PRK11195 90 -----H-P---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD----------- 149 (393)
T ss_pred -----H-H---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 1 1 2333445555566677888899999999999999999999999999999999999973
Q ss_pred CCCcchHHHHHHHHHHHHHhHhheeecccCC
Q 036040 281 PAGIGIKNTLFLLAAVNVLGLLFTFLVPEPN 311 (338)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 311 (338)
..|+..+.+.+.+.+++.+....+||.+
T Consensus 150 ---~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 177 (393)
T PRK11195 150 ---PHAEAALAVCALIYLLAALFNLFIPRLG 177 (393)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 2366666666555444444444677654
No 119
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.41 E-value=5e-12 Score=107.66 Aligned_cols=173 Identities=13% Similarity=0.078 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHH
Q 036040 101 HLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 180 (338)
.++...+.........+......+.+-+++|+|+.| -..+.++..+.+.+..++-|++.||+|.|++.
T Consensus 15 ~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q------------~~ll~aiPil~GallRl~~g~l~drfGgR~~~ 82 (417)
T COG2223 15 NLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQ------------KGLLVAIPILVGALLRLPYGFLTDRFGGRKWT 82 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHH------------HHHHHHHHHHHhHHHHHHHHhhhcccCchHHH
Confidence 334444444445555666666666666778888877 34477778888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHH
Q 036040 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIG 260 (338)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~ 260 (338)
+.+.++..+-++.+++...+ .+...++.+.++.+. .++...+...++++.||++.+|.++|+.. .+|+|..+.
T Consensus 83 ~~s~~l~~IP~~~~~~a~~~-----~~~~~ll~~gll~G~-~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~ 155 (417)
T COG2223 83 ILSMLLLLIPCLGLAFAVTY-----PSTWQLLVIGLLLGL-AGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVA 155 (417)
T ss_pred HHHHHHHHHHHHHHHHHccC-----CchHHHHHHHHHHhc-ccceehcccccccccCChhhhhHHHHHhc-cccccHHHH
Confidence 99998888888888776632 112334444444343 34455677788999999999999999999 999999999
Q ss_pred HHHHHHhhhccccCCCCCCCCCCcc---hHHHHHHHHHHHHHhHhhee
Q 036040 261 AFGFLYAAQDQDKSKADPGYPAGIG---IKNTLFLLAAVNVLGLLFTF 305 (338)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 305 (338)
.++.+.+. ...+ |+.+..+..+..++..+..+
T Consensus 156 q~~~P~v~-------------~~~g~~~w~~~~~i~~~~l~v~~v~~~ 190 (417)
T COG2223 156 QLVAPLVA-------------VAFGFLAWRNVAGIYVVALAIAAVLAW 190 (417)
T ss_pred HHHHHHHH-------------HHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988 5666 88888888777777666555
No 120
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.41 E-value=3.2e-12 Score=116.46 Aligned_cols=179 Identities=16% Similarity=0.094 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhh-----c
Q 036040 101 HLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDII-----G 175 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g 175 (338)
..+...+..+.+....+.....+|.++++.|.+..+ .+. ...+ ... .++.+++|+++||+ |
T Consensus 13 ~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~-----------ig~-~~~~-~~~-~~~~~l~gpl~Dr~~~~~~G 78 (491)
T PRK11010 13 NSAILLILGFASGLPLALTSGTLQAWMTVENIDLKT-----------IGF-FSLV-GQA-YVFKFLWSPLMDRYTPPFLG 78 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH-----------HHH-HHHH-HHH-HHHHHHHHHHHHcccccCCC
Confidence 344555556666667777777888888887766544 111 1111 111 15788999999999 9
Q ss_pred hHHH-HHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHH
Q 036040 176 RVTI-QLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGK 254 (338)
Q Consensus 176 rr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~ 254 (338)
||+. +..+.+..+++...+++... ......+....++.+++.....+...++..|++|++.|+++.++......
T Consensus 79 rrr~~ll~~~i~~~~~~~~~a~~~~-----~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~ 153 (491)
T PRK11010 79 RRRGWLLATQLLLLVAIAAMGFLEP-----GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYR 153 (491)
T ss_pred CchHHHHHHHHHHHHHHHHHHHcCC-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHH
Confidence 8875 55666555555555554321 12233333333333444445556677889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCCCCC-CcchHHHHHHHHHHHHHhHhheeecccCC
Q 036040 255 AGAIIGAFGFLYAAQDQDKSKADPGYPA-GIGIKNTLFLLAAVNVLGLLFTFLVPEPN 311 (338)
Q Consensus 255 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 311 (338)
+|.++++.+...+. + ..||+..|++.+++.++..+..++.||+.
T Consensus 154 lG~llg~~l~~~l~-------------~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~ 198 (491)
T PRK11010 154 LAMLVSGGLALWLA-------------DRYLGWQGMYWLMAALLIPCIIATLLAPEPT 198 (491)
T ss_pred HHHHHHHHHHHHHH-------------hcccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999998887 4 46999999998888777766555667764
No 121
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.40 E-value=2.2e-12 Score=112.94 Aligned_cols=138 Identities=9% Similarity=0.003 Sum_probs=87.5
Q ss_pred HHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHH
Q 036040 106 ASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFF 185 (338)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~ 185 (338)
.+..++....++....+.|.++++.|+++.+ .+........++.+++.+++|++.||+|||+.++.+.+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~-----------~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~ 283 (356)
T TIGR00901 215 LLLIVLYKLGDSAATVLTTLFLLDMGFSKEE-----------IALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGI 283 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH-----------HHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3334444566677778888888887777654 22233334445677889999999999999999888877
Q ss_pred HHHHHHHHHHhhhhhcccc---cchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHH
Q 036040 186 FMTVFMLALAIPYHHWIQK---HNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGK 254 (338)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~ 254 (338)
+.++...+..+........ .+.........++..+......+...++.+|.+|++.|++.+|+.+...+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 284 VQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 6666555444321100000 01122233333333443444556778899999999999999999877553
No 122
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.40 E-value=3.9e-12 Score=113.27 Aligned_cols=148 Identities=14% Similarity=0.073 Sum_probs=98.0
Q ss_pred HHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHH
Q 036040 105 TASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGF 184 (338)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~ 184 (338)
..+..+......+....+.+.++++.|+++.+ .........++..++.+++|++.||+|||+++..+.
T Consensus 18 ~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------------~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~ 85 (402)
T TIGR00897 18 GYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQ------------SASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGL 85 (402)
T ss_pred HHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHH------------hHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 33333444444444555777788888888765 334667778888999999999999999999999988
Q ss_pred HHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHH-HHHHHH
Q 036040 185 FFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGA-IIGAFG 263 (338)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~-~~~~~~ 263 (338)
.+.+++.++...... ..+....+.....+.+.+.....+.....+.+.+|++.|++++|+.++...+|. .++|.+
T Consensus 86 ~~~~~~~~~~~~~~~----~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~ 161 (402)
T TIGR00897 86 LLWCVGHAAFIVFGL----GHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYY 161 (402)
T ss_pred HHHHHHHHHHHHHhc----cCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877776554422110 001122233333333332222223344556788999999999999999988886 578888
Q ss_pred HHHhh
Q 036040 264 FLYAA 268 (338)
Q Consensus 264 ~~~~~ 268 (338)
.+.+.
T Consensus 162 ~~~l~ 166 (402)
T TIGR00897 162 SSYAI 166 (402)
T ss_pred HHhcc
Confidence 87776
No 123
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.39 E-value=1.5e-11 Score=109.74 Aligned_cols=137 Identities=10% Similarity=-0.041 Sum_probs=82.0
Q ss_pred hhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 036040 116 YFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLAL 194 (338)
Q Consensus 116 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 194 (338)
.+....+.|.++.+ .|+++.+ .........++.+++.++.++++||+++|+.+..+.+...++..++
T Consensus 231 ~~~~~~~~p~~~~~~~g~~~~~------------~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~ 298 (406)
T PRK15402 231 LLAWIALSPVILISGEQLSSYE------------YGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLA 298 (406)
T ss_pred HHHHHHHhHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 33444556766544 5665533 2223344455677889999999999999999888877666655555
Q ss_pred HhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 036040 195 AIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAA 268 (338)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~ 268 (338)
...... .. ..........++.+.+.....+....... ..+++.|++..++.+....++..+++.+.+.+.
T Consensus 299 ~~~~~~--~~-~~~~~~~~~~~~~g~g~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~ 368 (406)
T PRK15402 299 ALATVI--SS-HAYLWLTAGLSLYAFGIGLANAGLYRLTL-FSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAY 368 (406)
T ss_pred HHHHHc--cc-ccHHHHHHHHHHHHHHHHHHhhhHHHHHh-hhccccccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 443210 01 11222222222222222222222222222 234488999999999999999999999999986
No 124
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.39 E-value=1.8e-11 Score=108.33 Aligned_cols=154 Identities=10% Similarity=-0.014 Sum_probs=95.6
Q ss_pred HhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 036040 114 VSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLA 193 (338)
Q Consensus 114 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 193 (338)
..+.....+.|.+.++.|+++.+ .........++.+++.++.+++.||+|+|+.+..+.+..++..++
T Consensus 219 ~~~~~~~~~~~~~~~~~g~s~~~------------~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~ 286 (382)
T PRK11128 219 GSHAAYYGFSAIYWQAAGYSAST------------IGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGL 286 (382)
T ss_pred HHhHhHHHHHHHHHHHCCCCHhH------------HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 33444556667777777776543 222444556677788889999999999999988887776666555
Q ss_pred HHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHH-HHHHHHHHHHHHHHhhhccc
Q 036040 194 LAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAA-GKAGAIIGAFGFLYAAQDQD 272 (338)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~ 272 (338)
+.... + ....+...++.++......+....+..+. +++.+++..++.+.. ..+|..++|.+.+.+.
T Consensus 287 ~~~~~-------~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~---- 353 (382)
T PRK11128 287 MGSTT-------A-LPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLY---- 353 (382)
T ss_pred HHhhh-------h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 54332 2 22223333333332222234444566666 555568888887643 4567789999999998
Q ss_pred cCCCCCCCCCCcchHHHHHHHHHHHHHhHh
Q 036040 273 KSKADPGYPAGIGIKNTLFLLAAVNVLGLL 302 (338)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (338)
+..|. ..++..+++.+++++
T Consensus 354 ---------~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 354 ---------QHLGA-GVFWVMALVALPALF 373 (382)
T ss_pred ---------HhccH-HHHHHHHHHHHHHHH
Confidence 45666 355555666555443
No 125
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.38 E-value=7.2e-12 Score=109.86 Aligned_cols=130 Identities=11% Similarity=0.002 Sum_probs=93.6
Q ss_pred ccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhh
Q 036040 121 LFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYH 199 (338)
Q Consensus 121 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~ 199 (338)
.+.|.+.++ .|+++.+ .........++.+++.++.+++.||.|||+.+..+....+++...+.+..
T Consensus 232 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 298 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTH------------YGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTP- 298 (365)
T ss_pred HHhHHHHHHHhCCchHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhc-
Confidence 567777776 5665543 33456667778888999999999999999998887666665555544332
Q ss_pred hcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 036040 200 HWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQ 269 (338)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~ 269 (338)
+......+..+..+++.....+...++..|.+|++.|+++.|+.+....++..+++.+.+.+.+
T Consensus 299 ------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 299 ------PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122233333333444444456677888999999999999999999999999999999998873
No 126
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.38 E-value=1.3e-11 Score=109.24 Aligned_cols=152 Identities=12% Similarity=0.088 Sum_probs=91.6
Q ss_pred ccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhh
Q 036040 121 LFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYH 199 (338)
Q Consensus 121 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~ 199 (338)
.+.+.++.+ .|+++.+ .........++.+++.++.+++.||+|+|+.+..+..+..++.+++.....
T Consensus 220 ~~~~~~~~~~~g~s~~~------------~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~ 287 (382)
T PRK10091 220 SYIKPYMMFISGFSETS------------MTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGG 287 (382)
T ss_pred HHHHHHHHHhcCCCHHH------------HHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 344444543 5666644 444667777888899999999999999999988877666655544432221
Q ss_pred hcccccchhhHHHHHHHHHHhhccCccc-eeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 036040 200 HWIQKHNSTGFVVMYALTFFFANFGPNS-TTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADP 278 (338)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 278 (338)
+.........+ .+.+..+..+ .......+..|.+.++.+ ..+....+|..++|.+.+.+.+
T Consensus 288 ------~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~--------- 349 (382)
T PRK10091 288 ------MKTASLIFAFI-CCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLT--------- 349 (382)
T ss_pred ------hHHHHHHHHHH-HHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHH---------
Confidence 11122222121 1211112222 122234455555555554 3466778999999999999984
Q ss_pred CCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040 279 GYPAGIGIKNTLFLLAAVNVLGLLFTF 305 (338)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (338)
...+|+..+.+.++.+++......
T Consensus 350 ---~~~~~~~~~~~~~~~~~~~~~~~~ 373 (382)
T PRK10091 350 ---LGLAYNYVALPAALLSFAAMSSLL 373 (382)
T ss_pred ---cccCcchHHHHHHHHHHHHHHHHH
Confidence 356788888877666665554444
No 127
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.38 E-value=4.7e-12 Score=111.63 Aligned_cols=171 Identities=15% Similarity=0.030 Sum_probs=111.0
Q ss_pred HHHHhHhhhhhhccHHHHHH-HccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHH-HHHH
Q 036040 109 WLLLDVSYFSQNLFQKEIFT-AVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLI-GFFF 186 (338)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~-~~~~ 186 (338)
.+...+........+|.+++ ++|.++.+ .........+...+..++.|.++||+|||+.++. +.+.
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~------------~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~ 73 (375)
T TIGR00899 6 AFLTGIAGALQFPTLSLFLSEEVRARPAM------------IGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLL 73 (375)
T ss_pred HHHHHHHHHHHhhHHHHHHHcccCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 44455555556666777654 56776654 3335556667777788899999999998887654 4443
Q ss_pred HHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhh--HHHHHHHHHHHHHHHHHHH
Q 036040 187 MTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTC--HGISAAAGKAGAIIGAFGF 264 (338)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~--~~~~~~~~~~g~~~~~~~~ 264 (338)
..++.++..+.. + ...+.+..++.++......+....+..|..|++.|+.+ .+.......+|..+++.+.
T Consensus 74 ~~~~~~~~~~~~-------~-~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~ 145 (375)
T TIGR00899 74 AALACLLFAWNR-------N-YFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLA 145 (375)
T ss_pred HHHHHHHHHhcc-------h-HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHH
Confidence 344444444332 1 22223333333333333445555667788887777654 5777777889999999999
Q ss_pred HHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCC
Q 036040 265 LYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNG 312 (338)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~ 312 (338)
+.+. +..+|+..|++.+++.++..+..+ ++||.+.
T Consensus 146 ~~l~-------------~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T TIGR00899 146 FWLA-------------LGFGFTVMFLTAALAFVLCGVLVWLFLPSYPR 181 (375)
T ss_pred HHHH-------------HhcccHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 9887 567999999998887777666555 5777543
No 128
>PRK10504 putative transporter; Provisional
Probab=99.38 E-value=1.4e-11 Score=112.14 Aligned_cols=140 Identities=10% Similarity=0.002 Sum_probs=92.3
Q ss_pred HhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 036040 114 VSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFML 192 (338)
Q Consensus 114 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 192 (338)
..+.....+.|.+++. .|.++.. .........++.+++.++.+++.||+|||+++..+..+.++...
T Consensus 275 ~~~~~~~~~~~~~~~~~~g~~~~~------------~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~ 342 (471)
T PRK10504 275 IGSGMLPFMTPVFLQIGLGFSPFH------------AGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSL 342 (471)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH
Confidence 3344455567777774 5665533 33455666777777778999999999999999888776666655
Q ss_pred HHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 036040 193 ALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQD 270 (338)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 270 (338)
++.+... . ..........+..+.+.....+....+..+..|++.|+.+.|+.++...+|..+++.+.+.+.+.
T Consensus 343 ~~~~~~~----~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~ 415 (471)
T PRK10504 343 LFMLVAL----L-GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGL 415 (471)
T ss_pred HHHhccc----c-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5543221 1 11111112222222222222334456677889999999999999999999999999999988753
No 129
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.38 E-value=2.8e-12 Score=96.18 Aligned_cols=134 Identities=19% Similarity=0.248 Sum_probs=99.5
Q ss_pred HHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecc
Q 036040 156 ALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAE 235 (338)
Q Consensus 156 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 235 (338)
..++.+++.++.|++.||+|||+.+..+.....++.+...... + ........++.+.......+....+..|
T Consensus 7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 78 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS-------N-ITVLIIARFLQGFGAAFALVAGAALIAD 78 (141)
T ss_pred ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc-------c-HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4456667888999999999999999988777776666555432 1 2223333333343334445566778899
Q ss_pred cCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccC
Q 036040 236 IFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEP 310 (338)
Q Consensus 236 ~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~ 310 (338)
.+|++.|+++.++.+....+|..+++.+.+.+. +..+|+..+.+.+.+.+++.+..+ +.||+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 79 IYPPEERGVALGLMSAGIALGPLLGPPLGGVLA-------------QFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred HCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHh-------------cccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 999999999999999999999999999999987 567888888888877777766655 55553
No 130
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.37 E-value=1e-11 Score=110.43 Aligned_cols=131 Identities=18% Similarity=0.074 Sum_probs=88.1
Q ss_pred HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeee
Q 036040 152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFI 231 (338)
Q Consensus 152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (338)
......+...++....+++.||+|||+.+.++.++.++...+..... +... +....++.+............
T Consensus 259 ~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~-------~~~~-~~~~~~l~g~~~~~~~~~~~~ 330 (396)
T TIGR00882 259 VTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFAT-------TALE-VVILKMLHAFEVPFLLVGCFK 330 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcC-------ChHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 44455666677788899999999999998888776666555433322 2122 222222222222111222334
Q ss_pred eecccCCccchhhhHHH-HHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhh
Q 036040 232 VPAEIFPARFRSTCHGI-SAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLF 303 (338)
Q Consensus 232 ~~~e~~p~~~R~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (338)
+..+..|++.++++.+. .+....+|+.+++.+.+.+. +..|++.+|.+.+++.++..+.
T Consensus 331 ~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~-------------~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 331 YITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMY-------------DSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHH-------------HhcccHHHHHHHHHHHHHHHHH
Confidence 56777888888887766 56788999999999999998 5678999999888777666544
No 131
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=99.37 E-value=8.3e-12 Score=114.99 Aligned_cols=141 Identities=20% Similarity=0.259 Sum_probs=120.6
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccc
Q 036040 148 FARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNS 227 (338)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (338)
......++..++.++|++++|+++||+|||+++++++++..++.++.++... .....++.++.+++..+...
T Consensus 119 ~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~--------~~~~~~~Rfl~G~~~~~~~~ 190 (521)
T KOG0255|consen 119 LVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPN--------YWMFLIFRFLSGFFGSGPLT 190 (521)
T ss_pred HHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCc--------HHHHHHHHHHHHhhccchhH
Confidence 3455778889999999999999999999999999999999988877777664 55677777888888888888
Q ss_pred eeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeec
Q 036040 228 TTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLV 307 (338)
Q Consensus 228 ~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (338)
+.+.+.+|+++++.|+.+..+ ....+.++.+++...+++. . +||+.+++..+..++.+++.++.
T Consensus 191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~-------------~--~Wr~~~~~~~~~~~~~~~~~~l~ 254 (521)
T KOG0255|consen 191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYIT-------------R--DWRWLFWIISIPSGLFLLLWFLP 254 (521)
T ss_pred HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHH-------------h--hHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999 8888899999999999986 3 89999999998888887775566
Q ss_pred ccCCC
Q 036040 308 PEPNG 312 (338)
Q Consensus 308 ~e~~~ 312 (338)
||+++
T Consensus 255 ~Es~r 259 (521)
T KOG0255|consen 255 PESPR 259 (521)
T ss_pred CcChH
Confidence 68653
No 132
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.36 E-value=8.7e-12 Score=116.41 Aligned_cols=190 Identities=12% Similarity=-0.043 Sum_probs=134.5
Q ss_pred HHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHH
Q 036040 109 WLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMT 188 (338)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~ 188 (338)
.+.............+.+-+++++++.+.+. +.+...++.+++.++.+++.||.|||+++.++.++++
T Consensus 42 ~~~~~~~~g~~~~~l~~iek~F~lss~~~G~------------i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~ 109 (633)
T TIGR00805 42 QLQGLLYNGLVNSSLTTIERRFKLSTSSSGL------------INGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMG 109 (633)
T ss_pred HHHHHHHHHHHHhhchhhhhhhCCCCCccee------------eeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHH
Confidence 3333333344455667787888988877444 6777788888899999999999999999999999999
Q ss_pred HHHHHHHhhhhhc----cc-------------------------------------c--cchhhHHHHHHHHHHhhccCc
Q 036040 189 VFMLALAIPYHHW----IQ-------------------------------------K--HNSTGFVVMYALTFFFANFGP 225 (338)
Q Consensus 189 ~~~~~~~~~~~~~----~~-------------------------------------~--~~~~~~~~~~~~~~~~~~~~~ 225 (338)
++.++.+++.... .. . ......+++..++.+.+....
T Consensus 110 lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~ 189 (633)
T TIGR00805 110 LGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPI 189 (633)
T ss_pred HHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcc
Confidence 9998887764110 00 0 002334555667777777777
Q ss_pred cceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccC--------CCCCCCCCCc-chHHHHHHHHHH
Q 036040 226 NSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKS--------KADPGYPAGI-GIKNTLFLLAAV 296 (338)
Q Consensus 226 ~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~~~ 296 (338)
.+...+++.|.+|++.|+...|+.+....+|..+|+.+.+.+.+...+. ..+|.-+... +|+..|++.+++
T Consensus 190 ~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l 269 (633)
T TIGR00805 190 FPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGV 269 (633)
T ss_pred hhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHH
Confidence 7888899999999999999999999999999999999999887532111 0111111112 377788888877
Q ss_pred HHHhHhheeecccC
Q 036040 297 NVLGLLFTFLVPEP 310 (338)
Q Consensus 297 ~~~~~~~~~~~~e~ 310 (338)
.++..+..+++|++
T Consensus 270 ~~l~~v~l~~~p~~ 283 (633)
T TIGR00805 270 ALLTSIPFFFFPKA 283 (633)
T ss_pred HHHHHHHHHhCccc
Confidence 77766555555554
No 133
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.36 E-value=3.2e-11 Score=102.90 Aligned_cols=177 Identities=15% Similarity=0.109 Sum_probs=130.1
Q ss_pred HHHHHHHHhHhhhhhhccHHHHHH-HccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHH
Q 036040 105 TASTWLLLDVSYFSQNLFQKEIFT-AVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIG 183 (338)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~ 183 (338)
..+.++...-+..+...+...+.. ++|++..+ -..+.....+..++|++++|++.||+|.|++++.+
T Consensus 257 FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~------------lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~ 324 (438)
T COG2270 257 FLIARFFYIDGVNTILAMGGVFGAADLGLSSTE------------LLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIG 324 (438)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHH
Confidence 334444444445555555556665 57887766 33466777888889999999999999999999988
Q ss_pred HHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHH
Q 036040 184 FFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFG 263 (338)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~ 263 (338)
.++..+.++...+... ..-...+.++.+...++.++.+-++..++.|+++-++.+|+++..++.+++++|.+
T Consensus 325 lvi~~~~~~~~~~~~~--------~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~l 396 (438)
T COG2270 325 LVILSIAALYLIFLEG--------ELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFL 396 (438)
T ss_pred HHHHHHHHHHHHHccc--------cHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHH
Confidence 7777666655544331 22334444555566677788899999999999999999999999999999999999
Q ss_pred HHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCCCC
Q 036040 264 FLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGR 313 (338)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 313 (338)
.+.+.+ -..+-+..+....++..++++....+|+.+++
T Consensus 397 v~v~t~------------iTg~~r~g~~~i~vll~iGl~~L~~v~~~~~~ 434 (438)
T COG2270 397 VAVITQ------------ITGSSRAGVLSIIVLLLIGLLLLLRVKVPGRR 434 (438)
T ss_pred HHHHHH------------HhcchhhHHHHHHHHHHhhHhhEEeecCCCCc
Confidence 999985 23346677777777777888877777766443
No 134
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.35 E-value=3.7e-11 Score=106.70 Aligned_cols=176 Identities=16% Similarity=0.150 Sum_probs=111.7
Q ss_pred HHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHH
Q 036040 103 LGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLI 182 (338)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~ 182 (338)
+.+.+.+++.+..+.++..++|.+.++ .++... ......+..+...++.+++|+++||+|+|+++.+
T Consensus 255 Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~------------~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~ 321 (462)
T PRK15034 255 WLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVN------------ILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLI 321 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHH------------HHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHH
Confidence 445666667677777788888988776 222111 1112333456667788899999999999999998
Q ss_pred HHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCc---------------------cc
Q 036040 183 GFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPA---------------------RF 241 (338)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~---------------------~~ 241 (338)
+.+.+.++...+..... .....+.......+..+..+.+.+ ....+-++...+|+ +.
T Consensus 322 ~~i~~~i~~~~~~l~lp-~~~~~~~~~~~~~~~~l~~~~G~g-ngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (462)
T PRK15034 322 NFIFMAIFSALLFLTLP-GTGSGNFIAFYAVFMGLFLTAGLG-SGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTE 399 (462)
T ss_pred HHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccc-chHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHH
Confidence 87766665543322221 000011122222222222222333 33455677788874 14
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040 242 RSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF 305 (338)
Q Consensus 242 R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (338)
-|.+.|++...+.+|+++.|.+++...+ ...++...|+.+.+..+++.++.+
T Consensus 400 ~g~v~G~v~a~G~~Ggf~~p~~~g~~~~------------~~g~~~~~~~~~~~~~~~~~~~~w 451 (462)
T PRK15034 400 TAAALGFISAIGAVGGFFIPQAFGMSLN------------MTGSPVGAMKVFLIFYIVCVLLTW 451 (462)
T ss_pred HHHHHHHHHHHHHcccchhhHHHHHHHH------------HcCCcHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999888874 334578888888888888877766
No 135
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.35 E-value=3.8e-11 Score=109.66 Aligned_cols=148 Identities=12% Similarity=0.018 Sum_probs=99.8
Q ss_pred HHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHH
Q 036040 106 ASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGF 184 (338)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~ 184 (338)
.+..+.....+++...+.|.++++ .|+++.+ +........++.+++.+++|++.||+|||+.+..+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~------------~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~ 328 (485)
T TIGR00711 261 CVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQ------------AGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGL 328 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHH
Confidence 333444555666777788888877 5766644 444667778888899999999999999999988887
Q ss_pred HHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHH
Q 036040 185 FFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGF 264 (338)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~ 264 (338)
.+.+++..++.+... ............++.+++.....+.......+..|++.|+++.|+.++...+|+.+++.+.
T Consensus 329 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~ 404 (485)
T TIGR00711 329 ILYAVGFYWRAFTFT----PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALI 404 (485)
T ss_pred HHHHHHHHHHhccCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 766666655542211 1111222222222222222222223344556778999999999999999999999999999
Q ss_pred HHhhh
Q 036040 265 LYAAQ 269 (338)
Q Consensus 265 ~~~~~ 269 (338)
+.+.+
T Consensus 405 g~~~~ 409 (485)
T TIGR00711 405 TTILT 409 (485)
T ss_pred HHHHH
Confidence 98873
No 136
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.34 E-value=2.1e-11 Score=107.80 Aligned_cols=147 Identities=10% Similarity=-0.065 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHH
Q 036040 102 LLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQL 181 (338)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~ 181 (338)
++.+.+..+...........+.|.+.++.|.+..+ .+.......++..++.++.|+++||+|||+.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~------------~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~ 75 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQ------------VGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYY 75 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34455555566667777788899999998887654 455777778888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHH
Q 036040 182 IGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGA 261 (338)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~ 261 (338)
.+.++.+++..+..+... ...+.+..++.+.+.....+.....+.+..|++.|+++++.......+|..+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~--------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 147 (381)
T PRK03633 76 LASLIFAAGCAGLGLMVG--------FWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQ 147 (381)
T ss_pred HHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888877766655432 333344444444444343444444556788889999999999999999999999
Q ss_pred HHHHHhh
Q 036040 262 FGFLYAA 268 (338)
Q Consensus 262 ~~~~~~~ 268 (338)
.+.+.+.
T Consensus 148 ~~~~~l~ 154 (381)
T PRK03633 148 LLVSKVS 154 (381)
T ss_pred HHHhccc
Confidence 9998875
No 137
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.34 E-value=1e-10 Score=103.52 Aligned_cols=139 Identities=14% Similarity=0.085 Sum_probs=84.6
Q ss_pred hHhhhhhhccHHHHHH-HccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 036040 113 DVSYFSQNLFQKEIFT-AVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFM 191 (338)
Q Consensus 113 ~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 191 (338)
...++....+.|.+++ +.|+++.+ .........++.+++.++.|++.||+|||+.+..+..+..++.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~g~~~~~------------~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~ 286 (385)
T TIGR00710 219 FGGFFAFFSGAPFVYIDIMGVSPSV------------FGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSA 286 (385)
T ss_pred HHHHHHHHHcChHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 3344555666677665 45666543 3345566677888899999999999999998888766666655
Q ss_pred HHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 036040 192 LALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYA 267 (338)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~ 267 (338)
+++...... ...............+.+.....+.......|..| +.|+++.++.+.....++.+.+.+.+..
T Consensus 287 ~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~ 358 (385)
T TIGR00710 287 VLLEITAIL---GLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLI 358 (385)
T ss_pred HHHHHHHHh---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 554433210 00112222222222333233334455566778777 5789999999888776555555555533
No 138
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.34 E-value=1.8e-11 Score=107.20 Aligned_cols=157 Identities=8% Similarity=0.033 Sum_probs=120.3
Q ss_pred hhhccHHHHHHHccCCCCC-CCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHh
Q 036040 118 SQNLFQKEIFTAVGWLPAA-HTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAI 196 (338)
Q Consensus 118 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 196 (338)
......|.+.+++|+++++ .+. +......+..++.+.+|+++||+|.|+++.++.+..++..++.++
T Consensus 44 n~s~a~p~L~~elglT~~qv~G~------------I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~f 111 (511)
T TIGR00806 44 GESFITPYLLTVLNFTEETVTNE------------IIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLL 111 (511)
T ss_pred hHHHHHHHHHHHcCCCHHHhcch------------HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence 3445567777789999877 443 666777777888889999999999999999999999888888887
Q ss_pred hhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 036040 197 PYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKA 276 (338)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 276 (338)
... ...+.+..++.+.+.++.. ....++..++|++.|++++|+.+....+|.++++.+.+.+
T Consensus 112 a~S--------l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll--------- 173 (511)
T TIGR00806 112 GTS--------VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL--------- 173 (511)
T ss_pred HHH--------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 642 4455566666666665555 7778999999999999999999999999999999999994
Q ss_pred CCCCCCCcchHHHHH---HHHHHHHHhHhheeeccc
Q 036040 277 DPGYPAGIGIKNTLF---LLAAVNVLGLLFTFLVPE 309 (338)
Q Consensus 277 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~e 309 (338)
..+||+.... +-.+...+++++.+++|.
T Consensus 174 -----~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~ 204 (511)
T TIGR00806 174 -----VTLGWISYSTLNIISLVFMTFSVFLALFLKR 204 (511)
T ss_pred -----HhcCchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3557765433 333444455556667774
No 139
>PRK11043 putative transporter; Provisional
Probab=99.34 E-value=5.9e-11 Score=105.72 Aligned_cols=138 Identities=9% Similarity=0.029 Sum_probs=84.3
Q ss_pred hhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 036040 115 SYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLAL 194 (338)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 194 (338)
.++....+.|.++++.|+++.+ .........++.++|.++.+++.||+|+|+..........++.+.+
T Consensus 218 ~~~~~~~~~p~~~~~~g~s~~~------------~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~ 285 (401)
T PRK11043 218 AFFAWLTGSPFILEQMGYSPAD------------IGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAI 285 (401)
T ss_pred HHHHHHHHhHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 3445556778888877776643 2224455566777888889999999999987665554444443332
Q ss_pred HhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 036040 195 AIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAA 268 (338)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~ 268 (338)
...... ...+ ...........++......+.......|..| +.|+++.|+.+.....++..++.+.+.+.
T Consensus 286 ~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~ 355 (401)
T PRK11043 286 WLASLL--SHPS-LVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALI 355 (401)
T ss_pred HHHHHh--ccCc-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 221110 0111 2222222222233333344445455556666 57999999999998888888998888886
No 140
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.33 E-value=4.5e-11 Score=109.30 Aligned_cols=147 Identities=14% Similarity=0.017 Sum_probs=101.7
Q ss_pred HHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHH
Q 036040 106 ASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGF 184 (338)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~ 184 (338)
.+..+.....+++...+.|.+++. .|+++.+ +........++..++.++.|++.||+|+|+.+..+.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~------------ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~ 332 (495)
T PRK14995 265 VVMAMTAMITLVGFELLMAQELQFVHGLSPLE------------AGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGM 332 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 334444455566677788888876 5777754 455777778888899999999999999999888887
Q ss_pred HHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHH
Q 036040 185 FFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGF 264 (338)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~ 264 (338)
++.+++..++..... . +.........++.+++.+...+.......+..|++.++.+.++.++...+|+.+|+.+.
T Consensus 333 ~~~~~~~~~l~~~~~----~-~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~ 407 (495)
T PRK14995 333 ALSALSFYGLAMTDF----S-TQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIF 407 (495)
T ss_pred HHHHHHHHHHHHhcC----C-CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 766665554433211 1 11222222333333333333444556677889999999999999999999999999999
Q ss_pred HHhhh
Q 036040 265 LYAAQ 269 (338)
Q Consensus 265 ~~~~~ 269 (338)
+.+.+
T Consensus 408 g~i~~ 412 (495)
T PRK14995 408 GLLLS 412 (495)
T ss_pred HHHHH
Confidence 88864
No 141
>PRK10133 L-fucose transporter; Provisional
Probab=99.32 E-value=4.2e-11 Score=107.59 Aligned_cols=151 Identities=10% Similarity=-0.065 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHH
Q 036040 101 HLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 180 (338)
.+..+.+.++...+.......+.|.+.+++|.++.+ .........++..++.++.|+++||+|||+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~------------~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l 94 (438)
T PRK10133 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQ------------AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGI 94 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 345555666666677777888899998888887755 44577788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHH
Q 036040 181 LIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIG 260 (338)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~ 260 (338)
..+..+.+++.+++..... .+....+....++.+.+.....+....++.|..|.+.|...+++.+....+|..++
T Consensus 95 ~~g~~~~~~~~~l~~~~~~-----a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g 169 (438)
T PRK10133 95 ITGLFLYALGAALFWPAAE-----IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIA 169 (438)
T ss_pred HHHHHHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Confidence 9999888888766532110 02233444444444544444455556667787777777778899999999999999
Q ss_pred HHHHHHhh
Q 036040 261 AFGFLYAA 268 (338)
Q Consensus 261 ~~~~~~~~ 268 (338)
+.+.+.+.
T Consensus 170 ~~~g~~l~ 177 (438)
T PRK10133 170 VVFGQSLI 177 (438)
T ss_pred HHHHHHHH
Confidence 98877653
No 142
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=99.32 E-value=2.2e-11 Score=104.54 Aligned_cols=212 Identities=15% Similarity=0.033 Sum_probs=132.4
Q ss_pred hhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHc-cCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhc
Q 036040 97 RHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAV-GWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIG 175 (338)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 175 (338)
++...+....+.++.-....+.+....|.+-.-. +-+...-+++. ........+..++.++|.++.|++.||+|
T Consensus 38 ~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps-----~i~~~Vn~~A~vGti~GQl~FG~lgD~~G 112 (538)
T KOG0252|consen 38 KHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPS-----GVLALVNAAALVGTIFGQLFFGWLGDKFG 112 (538)
T ss_pred HHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCc-----hHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3333444444445554455555555555433321 11111111111 23455778889999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHH
Q 036040 176 RVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKA 255 (338)
Q Consensus 176 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~ 255 (338)
||+++...++++.++.++++.... ..........+.++..+.+.+.++-+|...++.+|....+.||.-.+...+....
T Consensus 113 RK~vYG~~liImIi~t~~~~~s~~-~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~ 191 (538)
T KOG0252|consen 113 RKKVYGKELIIMIICSALSGLSVG-TTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGF 191 (538)
T ss_pred chhhhhHHHHHHHHHHHHhccCCC-CCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecch
Confidence 999999999998888886655442 1122244566677778888888888999999999999999999887776655554
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCCC--CCcchHHHHHHHHHHHHHhHhheeecccCCCCC
Q 036040 256 GAIIGAFGFLYAAQDQDKSKADPGYP--AGIGIKNTLFLLAAVNVLGLLFTFLVPEPNGRS 314 (338)
Q Consensus 256 g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 314 (338)
|...|..+.-.+..-....-..++.. ...-||..+.+.++.+++.+..-+.+|||++.+
T Consensus 192 GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~ 252 (538)
T KOG0252|consen 192 GILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYT 252 (538)
T ss_pred hHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHH
Confidence 44444433333221111100011111 123488888877777777766666889987654
No 143
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.32 E-value=3.9e-11 Score=106.14 Aligned_cols=152 Identities=14% Similarity=0.085 Sum_probs=104.3
Q ss_pred hhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhh
Q 036040 118 SQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIP 197 (338)
Q Consensus 118 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 197 (338)
....+.|.+.++.|.++.. .........++.+++.+..|++.||+|+|+.+..+.....++.+.+. .
T Consensus 218 ~~~~~lp~~~~~~g~s~~~------------~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~ 284 (381)
T PRK03633 218 SLYGLMPLYLNHQGMSDAS------------IGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-S 284 (381)
T ss_pred HHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-h
Confidence 3445678888876666543 23345566778888999999999999999988877666655544332 1
Q ss_pred hhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 036040 198 YHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKAD 277 (338)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 277 (338)
. ..... ...+.+.......|.....+.|..|++.++...+..+....+|..++|.+.+.+.
T Consensus 285 ~---------~~~~~-~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~--------- 345 (381)
T PRK03633 285 Q---------AAMAP-ALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLM--------- 345 (381)
T ss_pred h---------HHHHH-HHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 1 11111 1111222223345666677789999888888888888888899999999999998
Q ss_pred CCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040 278 PGYPAGIGIKNTLFLLAAVNVLGLLFTF 305 (338)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (338)
+..++...|.+.+.+.++..+..+
T Consensus 346 ----~~~g~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 346 ----QNYSDNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred ----HHhCccHHHHHHHHHHHHHHHHHH
Confidence 567888888887777766655444
No 144
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.31 E-value=4.8e-11 Score=105.71 Aligned_cols=155 Identities=15% Similarity=0.079 Sum_probs=103.2
Q ss_pred HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeee
Q 036040 152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFI 231 (338)
Q Consensus 152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (338)
......+...++.++.|+++||+|||+++..+.++..++.++..+...+..........++...++.+.+.....+....
T Consensus 40 ~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~ 119 (394)
T TIGR00883 40 TFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAAL 119 (394)
T ss_pred HHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHH
Confidence 33445555667889999999999999999999888888877776654221000000112333444455444555566778
Q ss_pred eecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCC
Q 036040 232 VPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPN 311 (338)
Q Consensus 232 ~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 311 (338)
++.|.+|++.|++..++......+|..+++.+...+...... ......+|+..|.+.+++.+++.......||++
T Consensus 120 ~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~-----~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (394)
T TIGR00883 120 YLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGD-----DALLEWGWRIPFLVSAVLVLIGLYLRRNLEETP 194 (394)
T ss_pred HhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-----HHhhccchHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 899999999999999999999899999998877665321100 000356899999877766666554433556543
No 145
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.31 E-value=1.8e-10 Score=102.29 Aligned_cols=153 Identities=12% Similarity=0.001 Sum_probs=90.1
Q ss_pred hhhhhhcc-HHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 036040 115 SYFSQNLF-QKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLA 193 (338)
Q Consensus 115 ~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 193 (338)
..++...+ .|.+.++.|+++.. .........++.+++.++.+++.||.+++ .++.+..+..++...
T Consensus 231 ~~~~~~~~~~p~~~~~~g~s~~~------------~g~~~~~~~~~~iig~~~~~~l~~r~~~~-~l~~~~~~~~~~~~~ 297 (394)
T PRK10213 231 GQFAFFTYIRPVYMNLAGFGVDG------------LTLVLLSFGIASFVGTSLSSFILKRSVKL-ALAGAPLVLAVSALV 297 (394)
T ss_pred HHHHHHHHHHHHHHHhcCCChhH------------HHHHHHHHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHH
Confidence 33444445 47777777877754 33355666778888999999999996544 433333332322222
Q ss_pred HHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 036040 194 LAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDK 273 (338)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 273 (338)
+.... +.........++.+++.....+...+++++..|+ .+++..++......+|..+|+.+.+.+.
T Consensus 298 l~~~~-------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G~~l~G~l~----- 364 (394)
T PRK10213 298 LTLWG-------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-QAEKAGSIQVAVIQLANTCGAAIGGYAL----- 364 (394)
T ss_pred HHHHh-------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 22111 1122222233333333333334444466777774 4567777777888899999999999998
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHHHHhH
Q 036040 274 SKADPGYPAGIGIKNTLFLLAAVNVLGL 301 (338)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (338)
+..|+...+...++..++..
T Consensus 365 --------~~~g~~~~~~~~~~~~~~~~ 384 (394)
T PRK10213 365 --------DNIGLTSPLMLSGTLMLLTA 384 (394)
T ss_pred --------hccChhhHHHHHHHHHHHHH
Confidence 56777777766655544443
No 146
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.31 E-value=3.5e-11 Score=107.17 Aligned_cols=176 Identities=16% Similarity=0.080 Sum_probs=121.5
Q ss_pred HHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhh-----chHH-H
Q 036040 106 ASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDII-----GRVT-I 179 (338)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~-~ 179 (338)
...++.+...+.-...-+|.++++.|++.++.+ . ....... .+..+++|+++||+ |||+ .
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig-----------~-~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~ 70 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTIG-----------F-FSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGW 70 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHH-----------H-HHHHHHH--HHHHHHHHHHHHcccccCCCcchhH
Confidence 345566666777777889999999999887622 2 2222222 46788999999999 7765 6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHH
Q 036040 180 QLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAII 259 (338)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~ 259 (338)
++.+.++++++...+.+... ......+....++..+......+...+++.|.+|++.|+++.++......+|.++
T Consensus 71 l~~~~~~~~l~~~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~ 145 (402)
T PRK11902 71 LLLTQVGLAASIAAMAFCPP-----HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLV 145 (402)
T ss_pred HHHHHHHHHHHHHHHHhcCc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHH
Confidence 77777777666666554421 1112223333223334444455667788999999999999999999988999999
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCCC
Q 036040 260 GAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPNG 312 (338)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 312 (338)
++.+...+.+ ...||+..|++.++..++..+..++.||++.
T Consensus 146 g~~l~~~l~~------------~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~ 186 (402)
T PRK11902 146 SGGLALWLAD------------RVLGWGNTYLLMAGLMLAGALTTLWAPEPEV 186 (402)
T ss_pred HhHHHHHHHh------------cccCHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 9998888862 2359999999888877666554446676543
No 147
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.31 E-value=3.3e-11 Score=121.38 Aligned_cols=132 Identities=8% Similarity=-0.087 Sum_probs=90.7
Q ss_pred hhhhccHHHHHHH-ccCCCC-CCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 036040 117 FSQNLFQKEIFTA-VGWLPA-AHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLAL 194 (338)
Q Consensus 117 ~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 194 (338)
+....++|.++.+ +|++.. . ...+.+...++.+++.++++++.||+++++.+.++.++.+++.+++
T Consensus 249 ~~~~~~~~~~~~~~~g~s~~~~------------~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~ 316 (1146)
T PRK08633 249 QLAQANFPAYAKEVLGLDNTFQ------------VQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLL 316 (1146)
T ss_pred HHHHHhhHHHHHHHhCCCcHHH------------HHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHH
Confidence 3344556666654 566654 2 3446667778888999999999999999988887776666665555
Q ss_pred HhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 036040 195 AIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAA 268 (338)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~ 268 (338)
.+.. + ....++..++.+++.....+...+++.+..|++.||+++|+.+++..+|.++++.+.+.+.
T Consensus 317 ~~~~-------~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 317 PTAP-------S-LASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred HHhh-------h-HHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4432 1 2222233333333333334456678899999999999999999999999888887776664
No 148
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.30 E-value=5.1e-11 Score=104.31 Aligned_cols=140 Identities=13% Similarity=0.024 Sum_probs=93.0
Q ss_pred HHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhh-chHHHHHHHHHHH
Q 036040 109 WLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDII-GRVTIQLIGFFFM 187 (338)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~ 187 (338)
..+....+++...+.|.++++.|+++.+ .........++.+++.++.|++.||+ +||+.+..+..++
T Consensus 206 ~~~~~~~~~~~~~~lp~~~~~~g~~~~~------------~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~ 273 (355)
T TIGR00896 206 FGLQSGLYYSLIGWLPAILISHGASAAT------------AGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQ 273 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Confidence 3444556677778899999887776644 44466677888899999999999999 5666666666666
Q ss_pred HHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecc-cCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 036040 188 TVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAE-IFPARFRSTCHGISAAAGKAGAIIGAFGFLY 266 (338)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~ 266 (338)
+++.+++.+... . .... ..++.+++.....+...+...+ ..+++.++...++.+..+.++..++|.+.+.
T Consensus 274 ~~~~~~~~~~~~------~-~~~~--~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~ 344 (355)
T TIGR00896 274 LVGLCGLLFAPM------H-GLWA--WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGV 344 (355)
T ss_pred HHHHHHHHHhhh------h-HHHH--HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665554443321 1 1111 1222333333334443344443 3446677899999999999999999999999
Q ss_pred hhh
Q 036040 267 AAQ 269 (338)
Q Consensus 267 ~~~ 269 (338)
+.+
T Consensus 345 l~~ 347 (355)
T TIGR00896 345 LHD 347 (355)
T ss_pred HHH
Confidence 985
No 149
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.30 E-value=1.3e-10 Score=99.35 Aligned_cols=155 Identities=16% Similarity=0.115 Sum_probs=102.0
Q ss_pred HHHHHHHhHhhhhhhccHHHHHHH---ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHH
Q 036040 106 ASTWLLLDVSYFSQNLFQKEIFTA---VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLI 182 (338)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~ 182 (338)
.+..++....-.+...|.+.|+++ .|+++.+ +.........+..+|.+++++++||+|+|+++.+
T Consensus 146 ~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~------------a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~ 213 (310)
T TIGR01272 146 ALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQ------------AAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAF 213 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 344444444555677788888875 2555543 4446777788888999999999999999998887
Q ss_pred HHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHH
Q 036040 183 GFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAF 262 (338)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~ 262 (338)
+..+++++.++..... . ..... .....+++....+|...+...+.+|++ .+++.++. ..+.+|+.+.|.
T Consensus 214 ~~~l~~~~~~l~~~~~-------~-~~~~~-~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~ 282 (310)
T TIGR01272 214 NAFLAVLLSIGAALTH-------G-YVAMW-FVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPL 282 (310)
T ss_pred HHHHHHHHHHHHHHcC-------C-HHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHH
Confidence 7666665553333221 1 11112 222344445555677777777877765 35666664 567789999999
Q ss_pred HHHHhhhccccCCCCCCCCCCcchHHHHHHHHHH
Q 036040 263 GFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAV 296 (338)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (338)
+.+.+. +..|.+.++++...+
T Consensus 283 l~G~la-------------d~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 283 LQGSLA-------------DCLGIQLAFALPVPC 303 (310)
T ss_pred HHHHHH-------------HhccchHHHHHHHHH
Confidence 999997 466777777644433
No 150
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.30 E-value=2.3e-11 Score=108.59 Aligned_cols=139 Identities=15% Similarity=0.095 Sum_probs=118.8
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccce
Q 036040 149 ARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNST 228 (338)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (338)
-..+......+.+++.+.+|++.||+|-|+++..+.++.++..++..++... ....+++..++.+++.+...|.
T Consensus 75 k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~------~~~~~~~~R~lqGl~~g~~~pa 148 (466)
T KOG2532|consen 75 KGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI------GFYLLLVLRFLQGLGQGVLFPA 148 (466)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh------cchhhHHHHHHhHHHHhHHHhh
Confidence 3446677788999999999999999999999999999999888888776632 1235677778888777777888
Q ss_pred eeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040 229 TFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF 305 (338)
Q Consensus 229 ~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (338)
...+.+.+.|++.|++..++.....++|.+++-.+.+.+.+ ...||+..|++.++++++..++.+
T Consensus 149 ~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~------------s~~GW~sifY~~g~~g~i~~~~w~ 213 (466)
T KOG2532|consen 149 IGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCE------------SSLGWPSIFYVFGIVGLIWFILWF 213 (466)
T ss_pred hhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc------------cCCCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999983 349999999999999888877766
No 151
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.29 E-value=4.4e-12 Score=106.26 Aligned_cols=113 Identities=17% Similarity=0.038 Sum_probs=92.7
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccc
Q 036040 148 FARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNS 227 (338)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (338)
.++.....+.+.+++.++.+|.++||+|||+++.++.+..++...+.+.... ...++...+..+. .-+..+
T Consensus 69 yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~--------F~afv~aR~l~Gi-~kgnl~ 139 (451)
T KOG2615|consen 69 YAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRN--------FAAFVLARFLGGI-FKGNLS 139 (451)
T ss_pred hhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhhh-ccCchH
Confidence 4667888889999999999999999999999999998888887766665542 2223333444444 456667
Q ss_pred eeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 036040 228 TTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQ 269 (338)
Q Consensus 228 ~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~ 269 (338)
++.++++|+++++.|+.+++.+.....+|-++||.+.+++..
T Consensus 140 v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 140 VIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 888999999999999999999999999999999999999974
No 152
>PTZ00207 hypothetical protein; Provisional
Probab=99.29 E-value=6.3e-11 Score=108.20 Aligned_cols=165 Identities=13% Similarity=0.087 Sum_probs=106.7
Q ss_pred HHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 036040 111 LLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVF 190 (338)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~ 190 (338)
......|++..+.|.+.+++|++..+. +.... +....+ .+.++.|++.||+|||++++++.+...++
T Consensus 38 ~~~g~~y~fsv~s~~L~~~lgls~~~l-----------~~i~s-vg~~~g-~~~lp~G~L~Dr~G~R~vllig~ll~~iG 104 (591)
T PTZ00207 38 ICTSFMYAFNLISGAMQARYNLTQRDL-----------STITT-VGIAVG-YFLLPYSFIYDYLGPRPIFVLSMTVFCLG 104 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCHHHH-----------HHHHH-HHHHHH-HHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 334556778888999988888887652 11122 212222 34556899999999999999999999988
Q ss_pred HHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 036040 191 MLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQD 270 (338)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 270 (338)
.++.++...... ..+...+.+..++.+.+.....+.....+.++|| +.||++.|+......+|+.+.+.+...+.
T Consensus 105 ~ll~ala~~~~i--~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~-- 179 (591)
T PTZ00207 105 TLLFALTFQEVI--EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF-- 179 (591)
T ss_pred HHHHHHHhcccc--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 888777531100 0123333333444444333333444556788887 68999999999999999876555555443
Q ss_pred cccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040 271 QDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF 305 (338)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (338)
. .+|+..|++.+++.++..++..
T Consensus 180 -----------~-~~~~~~fl~l~vl~~vv~ll~~ 202 (591)
T PTZ00207 180 -----------S-DNTSAYFFFLMSFALVVGILAI 202 (591)
T ss_pred -----------H-HhHHHHHHHHHHHHHHHHHHHH
Confidence 1 2566777777777666555544
No 153
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.27 E-value=4.3e-11 Score=106.00 Aligned_cols=147 Identities=15% Similarity=0.091 Sum_probs=110.9
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccce
Q 036040 149 ARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNST 228 (338)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (338)
-.....+..+++++|+++.++++||+|||..+.++.++..++.++....... +....++...++.+.........
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~-----~~~e~li~GR~i~Gl~~gl~~~~ 136 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSA-----PSFEMLILGRLIVGLACGLSTGL 136 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHhHHHHHH
Confidence 3456777899999999999999999999999988887777776666655421 33445555556555444444455
Q ss_pred eeeeecccCCccchhhhHHHHHHHHHHHHHHHHHH-HHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeec
Q 036040 229 TFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFG-FLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLV 307 (338)
Q Consensus 229 ~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (338)
...|++|..|++.||....+......+|..++..+ .+.+.. +...|...+.+..+++++.++...++
T Consensus 137 ~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilG------------t~~~W~~l~~~~~i~~~~~l~~l~~~ 204 (485)
T KOG0569|consen 137 VPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLG------------TEDLWPYLLAFPLIPALLQLALLPFL 204 (485)
T ss_pred HHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcC------------CCcchHHHHHHHHHHHHHHHHHHhcC
Confidence 66789999999999999999888888888888544 334431 45568888888888888888888899
Q ss_pred ccCCC
Q 036040 308 PEPNG 312 (338)
Q Consensus 308 ~e~~~ 312 (338)
||+.+
T Consensus 205 PESPk 209 (485)
T KOG0569|consen 205 PESPK 209 (485)
T ss_pred CCCcc
Confidence 99754
No 154
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.26 E-value=1e-10 Score=106.34 Aligned_cols=158 Identities=13% Similarity=0.070 Sum_probs=107.3
Q ss_pred hHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 036040 113 DVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFML 192 (338)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 192 (338)
.+........++.+..++|-++.. .++.....++..++.++.|.++|.+|||..++.+.++..++.+
T Consensus 57 ~~~~~~~a~~l~~I~~diG~~~~~-------------~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~I 123 (599)
T PF06609_consen 57 YFVLVLPASILPYINADIGGSDNW-------------SWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSI 123 (599)
T ss_pred HHHHhccHHHHHHHHHhcCCCccc-------------hHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHH
Confidence 344444445566777777765543 2345556677778888999999999999999999999998888
Q ss_pred HHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 036040 193 ALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQD 272 (338)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 272 (338)
+.+.+.. ...++....+.+.+ .+........++|+.|.+.|..+.++..........+++.+...+.
T Consensus 124 v~atA~~--------~~~~iag~~l~Gvg-aG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~---- 190 (599)
T PF06609_consen 124 VCATAQN--------MNTFIAGMVLYGVG-AGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFA---- 190 (599)
T ss_pred HhhcCCc--------HHHHHHHHHHHHHh-hHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhc----
Confidence 8876552 22333333333332 2333344556899999999998887776655555556666666554
Q ss_pred cCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040 273 KSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF 305 (338)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (338)
...+||+.|++.++...++++..+
T Consensus 191 ---------~~~~WRw~~~~~~i~~~i~~vl~~ 214 (599)
T PF06609_consen 191 ---------AHSGWRWIFYIFIIWSGIALVLIF 214 (599)
T ss_pred ---------cCCCcchHHHHHHHHHHHHHHHHH
Confidence 456899999988887777665544
No 155
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.26 E-value=2.7e-10 Score=100.57 Aligned_cols=133 Identities=17% Similarity=0.109 Sum_probs=73.5
Q ss_pred hhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 036040 115 SYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLA 193 (338)
Q Consensus 115 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 193 (338)
..+....+.|.+..+ .|+++.+ .........++.+++.++++++.||+|||+.+..+..+..+..+.
T Consensus 209 ~~~~~~~~~~~~~~~~~g~s~~~------------~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~ 276 (377)
T PRK11102 209 GMFSFLTAGPFVYIELNGVSPQN------------FGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIW 276 (377)
T ss_pred HHHHHHHcCHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 344444455655544 5666543 344566777788889999999999999999988876654443332
Q ss_pred HHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHH-HHHHHHHHHH
Q 036040 194 LAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGK-AGAIIGAFGF 264 (338)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~-~g~~~~~~~~ 264 (338)
+...... +.......+......+. .....+....+..|..| +.|+++.++.+.... +|..+++.+.
T Consensus 277 ~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~ 343 (377)
T PRK11102 277 LVVSALL---DLGFWALVVGVAAFVGC-VSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLS 343 (377)
T ss_pred HHHHHHH---hhhHHHHHHHHHHHHHH-HHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221100 00111111111121111 12222233345677766 788999998876544 4555555543
No 156
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.26 E-value=1.4e-10 Score=103.01 Aligned_cols=105 Identities=12% Similarity=0.090 Sum_probs=60.7
Q ss_pred HHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceee
Q 036040 151 AQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTF 230 (338)
Q Consensus 151 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (338)
.......++.+++.++.+++.||+|||+.+..+..+..++.+++..... .........+...+...+. +.
T Consensus 243 ~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~g~~~~~-~~-- 312 (392)
T PRK10473 243 IIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPS-------HAVSLFGITLICAGFSVGF-GV-- 312 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh-HH--
Confidence 3556667778888999999999999999998887776666665554331 1111121111111111221 11
Q ss_pred eeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 036040 231 IVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAA 268 (338)
Q Consensus 231 ~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~ 268 (338)
....+..|.+.|+ |.......++..+++.+.+.+.
T Consensus 313 ~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~ 347 (392)
T PRK10473 313 AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLA 347 (392)
T ss_pred HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHH
Confidence 2234555655553 3344444566677777777766
No 157
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.25 E-value=2.7e-11 Score=105.74 Aligned_cols=133 Identities=20% Similarity=0.213 Sum_probs=90.1
Q ss_pred HhHhhhhhhccHHHH-HHHccCC-CCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHH
Q 036040 112 LDVSYFSQNLFQKEI-FTAVGWL-PAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTV 189 (338)
Q Consensus 112 ~~~~~~~~~~~~~~~-~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 189 (338)
....++....+.|.+ .+..|++ .. .......+..+..+++.++.|+++||+++|+..........+
T Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 285 (352)
T PF07690_consen 218 FFFVFSGFSFFLPLYLQEVLGFSGPS------------QAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLIL 285 (352)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHCCTHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhhhhccCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 334555577788887 4556666 22 244456667777777899999999999988777776665555
Q ss_pred HHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHH
Q 036040 190 FMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGA 261 (338)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~ 261 (338)
..+.+...... ..........++.+++.....+....+..|.+|++.|+++.|+.+...++++.++|
T Consensus 286 ~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 286 GALGLLLLPFS-----SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHCCSHHH-----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 55544433321 11222222333333344444677788899999999999999999999999999887
No 158
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.25 E-value=4.3e-11 Score=104.85 Aligned_cols=169 Identities=15% Similarity=0.044 Sum_probs=107.0
Q ss_pred hhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhh-----chHHHH-HHHHHHHHHHHH
Q 036040 119 QNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDII-----GRVTIQ-LIGFFFMTVFML 192 (338)
Q Consensus 119 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~~-~~~~~~~~~~~~ 192 (338)
.....|.+.++.|++.++. +. .... .+...+ .+++|.++||+ |||+.+ +.+.+..+++..
T Consensus 7 ~~~~~~~~~~~~g~s~~~~-----------g~-~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~ 72 (356)
T TIGR00901 7 VGNTLPYWLRSKNVSLKTI-----------GF-FSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLL 72 (356)
T ss_pred HHhHHHHHHHHcCCCHHHH-----------HH-HHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHH
Confidence 4456788888888888652 11 2211 222222 77899999998 888864 555555555555
Q ss_pred HHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 036040 193 ALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQD 272 (338)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 272 (338)
.+++... ......+....++.........+...+++.|.+|++.|+.+.|+......+|.++++.+.+.+.....
T Consensus 73 ~l~~~~~-----~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g 147 (356)
T TIGR00901 73 ILSFLVP-----STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEF 147 (356)
T ss_pred HHHcCCc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 5544321 11122222332233333333445566789999999999999999999999999999999988863211
Q ss_pred cCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCC
Q 036040 273 KSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPN 311 (338)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~ 311 (338)
.+ ....++|+..|++.+++.++..+..+ ..||++
T Consensus 148 ~~-----~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~ 182 (356)
T TIGR00901 148 AN-----TGLITLWGYIFFWTALLILPGLLVTLFLAKEPQ 182 (356)
T ss_pred cc-----cccccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 00 00233499999988887777666555 456653
No 159
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.25 E-value=1.3e-10 Score=116.91 Aligned_cols=145 Identities=12% Similarity=0.045 Sum_probs=101.5
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccce
Q 036040 149 ARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNST 228 (338)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (338)
..+..+...+..+++++++|+++||+|||+++........+...+...... . .....+++..++.+.+.....+.
T Consensus 54 ~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~-~----~s~~~l~~~~~l~gi~~a~~~p~ 128 (1140)
T PRK06814 54 VTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH-L----NSVPLLFAALFLMGIHSALFGPI 128 (1140)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH-H----hhHHHHHHHHHHHHHHHHhhchH
Confidence 334555667777888999999999999999764422222222211111110 0 22445555666666666666788
Q ss_pred eeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecc
Q 036040 229 TFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVP 308 (338)
Q Consensus 229 ~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (338)
..+++.+++|++.|+.++|+.++...+|.++||.+.+.+. ...+|+..|+..+++.++++++.+++|
T Consensus 129 ~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (1140)
T PRK06814 129 KYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLAT-------------ISGNFVILVALLMGIAVLGWLASLFIP 195 (1140)
T ss_pred HHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHH-------------hccccHHHHHHHHHHHHHHHHHHhhCC
Confidence 8899999999999999999999999999999999999998 567898888555555555555555666
Q ss_pred cCC
Q 036040 309 EPN 311 (338)
Q Consensus 309 e~~ 311 (338)
+++
T Consensus 196 ~~~ 198 (1140)
T PRK06814 196 KTG 198 (1140)
T ss_pred CCC
Confidence 653
No 160
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.25 E-value=2.3e-11 Score=110.00 Aligned_cols=176 Identities=14% Similarity=0.097 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhc--hHH
Q 036040 101 HLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIG--RVT 178 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--rr~ 178 (338)
.++...+...+..++++....++|.+.++.|++..+ +.....+..+..+++.++.|+++|+.. ++.
T Consensus 299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~------------aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~ 366 (509)
T KOG2504|consen 299 KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSND------------AAFLLSIIGVSDIIGRIILGLLADKPGIRALV 366 (509)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhh------------hHHHHHHHHHhhhhhhhhhhhhcCccccchHH
Confidence 345555566667788888999999999998888876 455778889999999999999999987 455
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHH
Q 036040 179 IQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAI 258 (338)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~ 258 (338)
+..++.++++++.+.+.+... ...+....++.++..+.........+.|+.+.+.-..+.|+...+..++..
T Consensus 367 ~~~~~ll~~gl~~~~~p~~~~--------~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l 438 (509)
T KOG2504|consen 367 LFLLTLLIAGLARLFLPFATT--------YVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGAL 438 (509)
T ss_pred HHHHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHH
Confidence 555665555555544444332 334444455555544444445556789999999999999999999999999
Q ss_pred HHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecc
Q 036040 259 IGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVP 308 (338)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (338)
+||.+.+.+.+ ...+|...|+..+++.+++.+..+..+
T Consensus 439 ~gpPiag~~~d------------~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 439 VGPPIAGLLYD------------ITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred cCcccceeeee------------ccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 99999998874 233388888888888887776666555
No 161
>PRK10133 L-fucose transporter; Provisional
Probab=99.25 E-value=1.2e-10 Score=104.75 Aligned_cols=152 Identities=9% Similarity=-0.073 Sum_probs=98.1
Q ss_pred HhhhhhhccHHHHH-HH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 036040 114 VSYFSQNLFQKEIF-TA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFM 191 (338)
Q Consensus 114 ~~~~~~~~~~~~~~-~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 191 (338)
...++...|.+.++ ++ .|+++.+ .........++.++|.++++++.||+|||+++..+.++.++.+
T Consensus 272 ~~~~~~~~~~~~~l~~~~~g~s~~~------------ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~ 339 (438)
T PRK10133 272 GAQTACWSYLIRYAVEEIPGMTAGF------------AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALC 339 (438)
T ss_pred HHHHHHHHHHHHHHhhhcCCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 34444445666664 43 4666644 4556777888889999999999999999999888866665554
Q ss_pred HHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 036040 192 LALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQ 271 (338)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 271 (338)
++..+.. + .. ........+++.....|..++...+.+|++ .+++.++..+ ..+|+.++|.+.+.+.
T Consensus 340 ~~~~~~~-------~-~~-~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~~-~~~g~~~~~~i~G~l~--- 405 (438)
T PRK10133 340 LISAFAG-------G-HV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGFVS--- 405 (438)
T ss_pred HHHHHcC-------C-hH-HHHHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHhH-HhccchHHHHHHHHHH---
Confidence 4433321 1 11 122233344445556777888888888765 4677777754 4567888888888887
Q ss_pred ccCCCCCCCCCCcc-hHHHHHHHHHHHHHhH
Q 036040 272 DKSKADPGYPAGIG-IKNTLFLLAAVNVLGL 301 (338)
Q Consensus 272 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 301 (338)
+..| .+.+|++..++.+...
T Consensus 406 ----------~~~g~~~~~~~v~~~~~~~~~ 426 (438)
T PRK10133 406 ----------DAAGNIPTAELIPALCFAVIF 426 (438)
T ss_pred ----------HhccchHHHHHHHHHHHHHHH
Confidence 4555 6777765554444333
No 162
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.25 E-value=1.7e-10 Score=103.16 Aligned_cols=199 Identities=13% Similarity=-0.011 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHH----hhchH
Q 036040 102 LLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILID----IIGRV 177 (338)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~grr 177 (338)
++.+....+...+.+-....+.+.+++.+|.++.. .........+..++..++.|+++| |+|||
T Consensus 6 li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~------------~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR 73 (477)
T TIGR01301 6 LLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAW------------ASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRR 73 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHhHeeehhcCCCCCCCCh
Confidence 44555556666666777777888888888886644 444667777888889999999999 59999
Q ss_pred HHHHHH-HHHHHHHHHHHHhhhhhcc---c---ccchh---hHHHHHHHHHHhhccCccceeeeeecccCCccch--hhh
Q 036040 178 TIQLIG-FFFMTVFMLALAIPYHHWI---Q---KHNST---GFVVMYALTFFFANFGPNSTTFIVPAEIFPARFR--STC 245 (338)
Q Consensus 178 ~~~~~~-~~~~~~~~~~~~~~~~~~~---~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R--~~~ 245 (338)
+.++.+ .+...+++.++.+...... + ..+.. ...+....+..+......+...++++|.+|++.| +.+
T Consensus 74 rp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a 153 (477)
T TIGR01301 74 RPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIA 153 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHH
Confidence 988875 4444455455544332110 0 00111 1111111122222333344566889999998866 578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh--hccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCC
Q 036040 246 HGISAAAGKAGAIIGAFGFLYAA--QDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNG 312 (338)
Q Consensus 246 ~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~ 312 (338)
.++......+|+++++.+.+... +..+-........-..+.+..|++.+++.+++.+... ..+|...
T Consensus 154 ~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~ 223 (477)
T TIGR01301 154 NAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPL 223 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCC
Confidence 88888899999999999887652 1111000000000113678889888888887777776 7888653
No 163
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.23 E-value=1.4e-10 Score=116.70 Aligned_cols=164 Identities=14% Similarity=0.052 Sum_probs=103.7
Q ss_pred HHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHH
Q 036040 111 LLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTV 189 (338)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 189 (338)
...+..+....+.|.++++ +|.++.. .+.+.+...++.++|.++.|+++|+.++++.+..+.++.++
T Consensus 236 ~~~~~~~~~~~~~p~~~~~~~g~~~~~------------~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~ 303 (1140)
T PRK06814 236 WFWLVGAVVLSQLPLLAKETLGGDENV------------ATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGL 303 (1140)
T ss_pred HHHHHHHHHHHHhHHHHHHHcCCchHH------------HHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHH
Confidence 3334445556678888876 4665543 44467777888899999999999988877666555555554
Q ss_pred HHHHHHhhhhh-------------cccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHH
Q 036040 190 FMLALAIPYHH-------------WIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAG 256 (338)
Q Consensus 190 ~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g 256 (338)
+.+.+.+.... .....+.+ .+.+..++.+++.....+...+++++.+|++.||+++|+.++...++
T Consensus 304 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~ 382 (1140)
T PRK06814 304 FGLDLAFASSSVPAEPAQLKSILVFLSKRHGW-RILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAF 382 (1140)
T ss_pred HHHHHHhcccccccccccccchhhhhcccccH-HHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHH
Confidence 44433332000 00001122 22223333333344444556788899999999999999999999999
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHH
Q 036040 257 AIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVL 299 (338)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (338)
..+++.+.+.+.+ ...++...+++.+++.++
T Consensus 383 ~~ig~~~~g~l~~------------~~~~~~~~~~~~~~~~~~ 413 (1140)
T PRK06814 383 MVAGTIILALLQA------------LGFSIPWIILFIALANLI 413 (1140)
T ss_pred HHHHHHHHHHHHH------------hccCHHHHHHHHHHHHHH
Confidence 9999999888863 344555555544444333
No 164
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.22 E-value=4.2e-10 Score=99.89 Aligned_cols=134 Identities=7% Similarity=-0.040 Sum_probs=85.8
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccce
Q 036040 149 ARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNST 228 (338)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (338)
.+.......++.++++++.+++.||.++|+.+..+.. .++...++.... + ........++.+.+.....+.
T Consensus 243 ~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~-------~-~~~~~~~~~~~G~~~g~~~~~ 313 (393)
T PRK11195 243 PAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQH-------S-LLPAYPLLILIGALGGFFVVP 313 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHh-------H-HHHHHHHHHHHHHhhhhhhhh
Confidence 4446677788889999999999999998887776643 333322222211 1 222222222233322222344
Q ss_pred eeeeecccCCccc-hhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040 229 TFIVPAEIFPARF-RSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF 305 (338)
Q Consensus 229 ~~~~~~e~~p~~~-R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (338)
..+..++..|++. +|++.++.+...+++..++..+.+.+. ..|.+..+.+.+...++++.+.+
T Consensus 314 ~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 377 (393)
T PRK11195 314 MNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV--------------KLGVPVVAVIVGFGLLVALAMAL 377 (393)
T ss_pred HHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH--------------HcCCCHHHHHHHHHHHHHHHHHH
Confidence 5566778766665 799999999999999999999988663 56666666665555555555554
No 165
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.22 E-value=6.7e-10 Score=97.99 Aligned_cols=171 Identities=14% Similarity=0.085 Sum_probs=107.7
Q ss_pred hhhhhhccHHHHHHHcc-CCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 036040 115 SYFSQNLFQKEIFTAVG-WLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLA 193 (338)
Q Consensus 115 ~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 193 (338)
..-....|.+.++++.| .+... ......+..++.++.-...+++..|+|.|++++++.+..++=..+
T Consensus 222 ~~~~~~~f~~~yl~~~gg~~~~~------------~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l 289 (400)
T PF03825_consen 222 SHAAYYTFFSIYLQELGGYSGST------------IGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLL 289 (400)
T ss_pred HHHHHHHHHHHHHHHcccchhhH------------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 33334566677888876 44322 333455667788888889999999999999999987776666655
Q ss_pred HHhhhhhcccccchhhHHHHHH---HHHHhhccCccceeeeeecccCCccchhhhHHHHHHH-HHHHHHHHHHHHHHhhh
Q 036040 194 LAIPYHHWIQKHNSTGFVVMYA---LTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAA-GKAGAIIGAFGFLYAAQ 269 (338)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~-~~~g~~~~~~~~~~~~~ 269 (338)
++.... +.+....... +..+............++.+..|++.|+++.++.... ..+|..+|..+.|++.+
T Consensus 290 ~a~~~~------~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~ 363 (400)
T PF03825_consen 290 YAYFSD------PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYD 363 (400)
T ss_pred HHHhcC------CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 554421 1111111111 1222222222334557899999999999999998875 46799999999999985
Q ss_pred ccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccC
Q 036040 270 DQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEP 310 (338)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~ 310 (338)
.... ...+.|...+.+.+++.++..++.. +.+|+
T Consensus 364 ~~g~-------~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 364 AFGA-------RGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred Hhcc-------hhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 3321 1233455566666666555555544 44443
No 166
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.21 E-value=1.7e-10 Score=103.36 Aligned_cols=170 Identities=12% Similarity=-0.015 Sum_probs=101.9
Q ss_pred HHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHH
Q 036040 106 ASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGF 184 (338)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~ 184 (338)
.+..++....++....+.|.++++ .|+++.+ .+...+...++..++.++.|+++||+|||+.++++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~------------~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~ 83 (420)
T PRK09528 16 SLFFFFFFFIWSSWFSFFPIWLHDINGLSGTD------------TGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWII 83 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 344455555555667788888777 7888765 445778888899999999999999999999988765
Q ss_pred HHHHHHHHHHHhh-hhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCC--ccchhhhHHHHHHHHHHHHHHHH
Q 036040 185 FFMTVFMLALAIP-YHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFP--ARFRSTCHGISAAAGKAGAIIGA 261 (338)
Q Consensus 185 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p--~~~R~~~~~~~~~~~~~g~~~~~ 261 (338)
.+.++........ ..... . ........+.......+. ........++.+ .+.++..+|.......+|..++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~ 158 (420)
T PRK09528 84 SGLLVLFGPFFIYVFAPLL---Q-YNILLGAIVGGIYLGFGF-LAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCA 158 (420)
T ss_pred HHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHhhhhh-ccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHH
Confidence 5544333221111 00000 0 000111111111111111 111111222222 23456677888888899999999
Q ss_pred HHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheee
Q 036040 262 FGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFL 306 (338)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (338)
.+.+.+. ..+|+..|++.++++++..+..++
T Consensus 159 ~~~g~l~--------------~~~~~~~f~~~~~~~~~~~~~~~~ 189 (420)
T PRK09528 159 FIAGILF--------------NINPQINFWLGSGSALILLVLLFF 189 (420)
T ss_pred HHHHHHH--------------hcCchHhHHHHHHHHHHHHHHHhc
Confidence 9999886 247888888877777776666553
No 167
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=99.21 E-value=4.8e-10 Score=102.98 Aligned_cols=142 Identities=19% Similarity=0.159 Sum_probs=113.4
Q ss_pred HHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCcccee
Q 036040 150 RAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTT 229 (338)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (338)
.++.....++..++.+++|+++|++|||+.++.+.+...++.++.+.+.. ...+.+..++.+.+.++...+.
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~--------~~~l~~GR~l~G~g~G~~~~~~ 163 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPS--------WYQLIVGRILTGLGVGGASVLA 163 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHhccchhhhhhcc
Confidence 45778888999999999999999999999999999999999888887763 4556666666666666666677
Q ss_pred eeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC-cchHHHHHHHHHHHHHhHhheeecc
Q 036040 230 FIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAG-IGIKNTLFLLAAVNVLGLLFTFLVP 308 (338)
Q Consensus 230 ~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (338)
..+.+|+.|++.||...+..+....+|..++ .+.+.... +. .+||..+.+..+.+++..+..+++|
T Consensus 164 piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~------------~~~~~Wr~~~~~~~i~~~~~~~~~~~~p 230 (513)
T KOG0254|consen 164 PVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTS------------KVYAGWRIPLGLALIPAVILALGMLFLP 230 (513)
T ss_pred hhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhc------------cCCccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7899999999999999999988888777777 44444431 11 5899998888888888888855889
Q ss_pred cCCC
Q 036040 309 EPNG 312 (338)
Q Consensus 309 e~~~ 312 (338)
|+.+
T Consensus 231 esp~ 234 (513)
T KOG0254|consen 231 ESPR 234 (513)
T ss_pred CChH
Confidence 8743
No 168
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.21 E-value=1.3e-10 Score=102.23 Aligned_cols=131 Identities=17% Similarity=0.169 Sum_probs=79.7
Q ss_pred HHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHH
Q 036040 109 WLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFM 187 (338)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~ 187 (338)
.++.....++...+.|.++++ .|+++.+ .........+..+++.+++|+++||+|||+.+..+....
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------------~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~ 301 (366)
T TIGR00886 234 YSVTFGSFLGVSSIFAMFFKDQFGLSKVT------------AGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGV 301 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHH------------HHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHH
Confidence 334444556667778888865 4666644 333555667777888999999999999988777766555
Q ss_pred HHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHH
Q 036040 188 TVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAG 256 (338)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g 256 (338)
..+..++.+... ...................+...+..+.+.++..| +.|++++|+.+..+++|
T Consensus 302 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 302 AMGAFLVVLGLV----SPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHHHHhcCC----CcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 554444433221 00012222222222222222223456677888887 68899999998877765
No 169
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.21 E-value=2.3e-10 Score=103.98 Aligned_cols=154 Identities=15% Similarity=0.094 Sum_probs=111.2
Q ss_pred hhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhh
Q 036040 119 QNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIP 197 (338)
Q Consensus 119 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 197 (338)
....+|.+.++ +|.++.. -+.+....+++.++|+++.+++.+|+++++++..+.++.+++++.+++.
T Consensus 237 ~~aLlPl~a~~~l~~~a~~------------yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~ 304 (524)
T PF05977_consen 237 VWALLPLFARDVLGGGASG------------YGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS 304 (524)
T ss_pred HHHhhhHHHHHHhCCcHHH------------HHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc
Confidence 34457777765 4544433 2346677889999999999999999999888888887777777776665
Q ss_pred hhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 036040 198 YHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKAD 277 (338)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 277 (338)
.. .+......++.+++.........+..++..|++.||+++++..+....+..+|..+.|.+.
T Consensus 305 ~~--------~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la--------- 367 (524)
T PF05977_consen 305 PS--------FWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLA--------- 367 (524)
T ss_pred hH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 42 2222333333344444444555677899999999999999999999999999999999998
Q ss_pred CCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040 278 PGYPAGIGIKNTLFLLAAVNVLGLLFTF 305 (338)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (338)
+..|.+.++.+.++..+++.++..
T Consensus 368 ----~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 368 ----DHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred ----HHhCHHHHHHHHHHHHHHHHHHHH
Confidence 577888888776665555555444
No 170
>PRK10054 putative transporter; Provisional
Probab=99.19 E-value=2.5e-10 Score=101.40 Aligned_cols=133 Identities=13% Similarity=0.077 Sum_probs=87.3
Q ss_pred HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeee
Q 036040 152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFI 231 (338)
Q Consensus 152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (338)
......+.........|.+.||.++|+.+..+.....+....+.+.. +......+..+..+.+.....+....
T Consensus 249 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~p~~~~ 321 (395)
T PRK10054 249 VLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG-------NSLLLWGMSAAVFTVGEIIYAPGEYM 321 (395)
T ss_pred HHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc-------hHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 44444455556667889999999999998888766666555454321 11222222233333333333445556
Q ss_pred eecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040 232 VPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF 305 (338)
Q Consensus 232 ~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (338)
++.+..|++.|+++.+..+ ..++|..+||.+.+.+. +..|....|++.+.+..+..++.+
T Consensus 322 ~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~-------------~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 322 LIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVIL-------------TTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred HHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHH-------------HHcChhhHHHHHHHHHHHHHHHHH
Confidence 7888999999999988654 67789999999999998 466777777766655555544443
No 171
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.19 E-value=5.4e-10 Score=99.58 Aligned_cols=134 Identities=10% Similarity=-0.097 Sum_probs=86.0
Q ss_pred hhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 036040 115 SYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLAL 194 (338)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 194 (338)
...+...+++.+.++.+...+. ..+.........+..+|.++++++.||+++|+++.+..+++.+++++.
T Consensus 247 ~e~~~~s~l~~y~~~~~~~~~~----------~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~ 316 (410)
T TIGR00885 247 VQIMCWTFIIQYAVRLIPGMTA----------GFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGS 316 (410)
T ss_pred HHHHHHHHHHHHHhhccCCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 3334556777777664322211 112223333445567899999999999999999888877777666665
Q ss_pred HhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 036040 195 AIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQ 269 (338)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~ 269 (338)
.... . ..... .....+++....+|..++...+..+++.+..+.++.... +|+.+.|.+.+.+.|
T Consensus 317 ~~~~-------~-~~~~~-~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d 380 (410)
T TIGR00885 317 IFAG-------G-HVGLY-CLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIID 380 (410)
T ss_pred HHcC-------C-hHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHH
Confidence 5433 1 12222 222333334444578888889999888766566665543 899999999999985
No 172
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.19 E-value=2.9e-10 Score=101.02 Aligned_cols=171 Identities=13% Similarity=0.022 Sum_probs=101.0
Q ss_pred HHHHhHhhhhhhccHHHHH-HHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHH-HHHHH
Q 036040 109 WLLLDVSYFSQNLFQKEIF-TAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQL-IGFFF 186 (338)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~-~~~~~ 186 (338)
.+............+|.++ +++|+++.+ .+........++.+.+.+.+++ .||+|||+.++ .+.+.
T Consensus 24 ~~~~~~~~~~~~p~~~~~l~~~~~~s~~~-----------~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~ 91 (393)
T PRK15011 24 AFLTGIAGALQTPTLSIFLTDEVHARPAM-----------VGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLL 91 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCHHH-----------HHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHH
Confidence 3444444444555666655 456776654 2222233344455556666666 99999998754 44444
Q ss_pred HHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchh--hhHHHHHHHHHHHHHHHHHHH
Q 036040 187 MTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRS--TCHGISAAAGKAGAIIGAFGF 264 (338)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~--~~~~~~~~~~~~g~~~~~~~~ 264 (338)
.++...+..+... ...+.......++......+....+..+..|++.|. ...++.+....+|.+++|.+.
T Consensus 92 ~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~ 163 (393)
T PRK15011 92 GVLACTLFAWNRN--------YFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLA 163 (393)
T ss_pred HHHHHHHHHHhhH--------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3344444333321 222222222222223334455555666766665553 334677778889999999999
Q ss_pred HHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCC
Q 036040 265 LYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNG 312 (338)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~ 312 (338)
+.+. +..||+..|++.++..++..+... ++||.++
T Consensus 164 ~~l~-------------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~ 199 (393)
T PRK15011 164 YALA-------------MGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRK 199 (393)
T ss_pred HHHH-------------HhcChHHHHHHHHHHHHHHHHHHHhhcCccCC
Confidence 9997 577999999888877776666555 6777643
No 173
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.19 E-value=1.8e-10 Score=100.81 Aligned_cols=152 Identities=16% Similarity=0.033 Sum_probs=104.6
Q ss_pred hhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 036040 116 YFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALA 195 (338)
Q Consensus 116 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 195 (338)
+.+....+|.+.+++|+++.+ .........++..++.++.|+++||+|||+.+..+.+...++.+..
T Consensus 16 ~~~~~~~lp~l~~~~~~s~~~------------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~- 82 (355)
T TIGR00896 16 LTSVGPLLPQIRSALGMSFSV------------AGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR- 82 (355)
T ss_pred cccCcccHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-
Confidence 344567889999998888765 4457778888889999999999999999999998876665554443
Q ss_pred hhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 036040 196 IPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSK 275 (338)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 275 (338)
... + ...+++..+..+.+.....+....++.|.+| +.|+++.++.+....+|..+++.+.+.+.+.
T Consensus 83 ~~~-------~-~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~----- 148 (355)
T TIGR00896 83 SAP-------G-TALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQH----- 148 (355)
T ss_pred Hhc-------c-HHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 211 1 2233333333333333323344456678886 5799999999999999999999988887630
Q ss_pred CCCCCCCCcchHHHHHHHHHHHHHh
Q 036040 276 ADPGYPAGIGIKNTLFLLAAVNVLG 300 (338)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (338)
...+|+..|.+.+++.++.
T Consensus 149 ------~~~~w~~~f~~~~~~~~~~ 167 (355)
T TIGR00896 149 ------SGGHWQQALAWWALPALLA 167 (355)
T ss_pred ------hhhhHHHHHHHHHHHHHHH
Confidence 1124888887666554443
No 174
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.17 E-value=6.4e-10 Score=112.15 Aligned_cols=115 Identities=11% Similarity=0.020 Sum_probs=87.5
Q ss_pred HHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCcccee
Q 036040 150 RAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTT 229 (338)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (338)
.+..++..++.+++++++|+++||+|||++++++.++..+..++..+.... .....+++..++.+.+.....+..
T Consensus 50 ~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~ 124 (1146)
T PRK08633 50 AIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYL-----GWFWLAFAVTFLLGAQSAIYSPAK 124 (1146)
T ss_pred HHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH-----ccHHHHHHHHHHHHHHHHhhchHH
Confidence 445666777788899999999999999999998876655555444433210 123444555555555555666777
Q ss_pred eeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 036040 230 FIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQ 269 (338)
Q Consensus 230 ~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~ 269 (338)
.++++|++|++.|++++|+......+|.++++.+.+.+..
T Consensus 125 ~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~ 164 (1146)
T PRK08633 125 YGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE 164 (1146)
T ss_pred HhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999998873
No 175
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.16 E-value=4.3e-10 Score=99.50 Aligned_cols=168 Identities=14% Similarity=0.004 Sum_probs=104.6
Q ss_pred HHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHH-HH
Q 036040 109 WLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFF-FM 187 (338)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~-~~ 187 (338)
+++..........++|.++++.|.+..+ .+.......+..+++.+++|.++||+|||........ ..
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~------------iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~ 80 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQGYTPET------------IGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLT 80 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCCHHH------------HHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHH
Confidence 3444445566677888999998887765 4446677788888899999999999998432211111 11
Q ss_pred HHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 036040 188 TVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYA 267 (338)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~ 267 (338)
.+......... +..+.+.+...+.+.......+...++..+. .+.|+++.+.....+.+|..++|.+.+.+
T Consensus 81 ~~~~~~~~~~~-------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l 151 (382)
T PRK11128 81 LLFAVAFWFGA-------HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKL 151 (382)
T ss_pred HHHHHHHHHhc-------ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 11111111110 1233333333433443444455555555554 34578888888889999999999999999
Q ss_pred hhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccC
Q 036040 268 AQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEP 310 (338)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 310 (338)
. +.+||+..|++.++..++..+...+.||.
T Consensus 152 ~-------------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 181 (382)
T PRK11128 152 V-------------SWFGEQAILWILTAGVASMLLGQLLRPTI 181 (382)
T ss_pred H-------------HHcChhHHHHHHHHHHHHHHHHHHccCCC
Confidence 8 57899999987776555544443355554
No 176
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.15 E-value=3.6e-10 Score=100.54 Aligned_cols=179 Identities=12% Similarity=-0.085 Sum_probs=106.1
Q ss_pred HHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHH
Q 036040 103 LGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQL 181 (338)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~ 181 (338)
+......++....+.....++|.++.+ .|+++.+ .........++..++.++.|+++||+|||+.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------------~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~ 72 (396)
T TIGR00882 5 WMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTD------------TGIVFSCISLFSILFQPLFGLISDKLGLKKHLL 72 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 334444555555666667788887765 6777654 445777888889999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHH
Q 036040 182 IGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGA 261 (338)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~ 261 (338)
.+....++.......................+..+..+.......+....+..+.. +.++...|.....+.+|..++|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~ 150 (396)
T TIGR00882 73 WIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCA 150 (396)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHH
Confidence 77655544333221110000000000111111122222222222333333333332 2234466777788889999999
Q ss_pred HHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-eccc
Q 036040 262 FGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPE 309 (338)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e 309 (338)
.+.+.+. ..+|+..|++.+++.++..++.+ ..||
T Consensus 151 ~~~g~l~--------------~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 185 (396)
T TIGR00882 151 SIAGILF--------------SIDPQIVFWLGSGFALILMLLLMFAKPK 185 (396)
T ss_pred HHHhhhh--------------ccCchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9988774 45899999888877777665555 3444
No 177
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.14 E-value=6.8e-10 Score=100.98 Aligned_cols=116 Identities=14% Similarity=0.009 Sum_probs=74.2
Q ss_pred HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeee
Q 036040 152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFI 231 (338)
Q Consensus 152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (338)
......++.+++.++.++++||+|+|+.++++.++..++.+...... .....+ ...+++..++.+.......+..++
T Consensus 271 ~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~i~~~l~g~~~~~~~~~~~a 347 (473)
T PRK10429 271 YLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMG--LAAPHN-ALLIVIAGILLNIGTALFWVLQVI 347 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHh--ccCchh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567778888999999999999999888766554444332211 001112 222222223333333334455677
Q ss_pred eecccCC-------ccchhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 036040 232 VPAEIFP-------ARFRSTCHGISAAAGKAGAIIGAFGFLYAAQD 270 (338)
Q Consensus 232 ~~~e~~p-------~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 270 (338)
+++|..+ .+..|...|...+...++..+++.+.+.+.+.
T Consensus 348 m~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~ 393 (473)
T PRK10429 348 MVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGL 393 (473)
T ss_pred HHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888855 34456678888889999999999999988753
No 178
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=3.3e-11 Score=101.65 Aligned_cols=142 Identities=15% Similarity=0.075 Sum_probs=121.4
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccce
Q 036040 149 ARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNST 228 (338)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (338)
.+.......+.+++.+++.|.++||+|+|..+++|..++..+.+++++..+ +...++.....+.+.......
T Consensus 108 iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~s--------y~~l~vAR~LQgvgsA~~~ts 179 (464)
T KOG3764|consen 108 IGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNS--------YPMLFVARSLQGVGSAFADTS 179 (464)
T ss_pred hhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcch--------hHHHHHHHHHhhhhHHHHHhh
Confidence 445777788899999999999999999999999999999999998887764 446777777777777777777
Q ss_pred eeeeecccCCccc-hhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-e
Q 036040 229 TFIVPAEIFPARF-RSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-L 306 (338)
Q Consensus 229 ~~~~~~e~~p~~~-R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 306 (338)
..+++++.||.+. |++++|+...+..+|..++|...+.++ +..|.+.+|+++++++++...+.+ .
T Consensus 180 glamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilY-------------e~~Gk~aPFlVL~~v~Lld~~L~l~v 246 (464)
T KOG3764|consen 180 GLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILY-------------EFAGKSAPFLVLAIVLLLDGALQLLV 246 (464)
T ss_pred hHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchH-------------hhcCCcCcHHHHHHHHHHHHHHHHhe
Confidence 7889999999875 799999999999999999999999998 688999999999999999888877 4
Q ss_pred cccCC
Q 036040 307 VPEPN 311 (338)
Q Consensus 307 ~~e~~ 311 (338)
++.++
T Consensus 247 i~p~~ 251 (464)
T KOG3764|consen 247 IEPTE 251 (464)
T ss_pred eCccc
Confidence 44333
No 179
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.12 E-value=1.8e-09 Score=90.42 Aligned_cols=170 Identities=16% Similarity=0.155 Sum_probs=121.7
Q ss_pred HHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhh-chHHHHH
Q 036040 103 LGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDII-GRVTIQL 181 (338)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~ 181 (338)
+.+.+.+-.++..+|....|+|.++.+.|++..+ ++.......+.+++.++....+.+|. .+|+..+
T Consensus 211 W~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~------------aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~ 278 (395)
T COG2807 211 WQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAE------------AGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVV 278 (395)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHH------------hhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence 3455555667888999999999999999999977 44478888888999999999999975 4666666
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccC-CccchhhhHHHHHHHHHHHHHHH
Q 036040 182 IGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIF-PARFRSTCHGISAAAGKAGAIIG 260 (338)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~g~~~~ 260 (338)
.....+.++.+.+.+... +.. ... .+..+.+.++..+.....+..-. .++.-+.-.|+.+.++.+-+.+|
T Consensus 279 ~~~~~~l~G~~G~~~~P~------~~~--~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~G 349 (395)
T COG2807 279 LALLLMLVGLVGLLLAPG------QLP--ILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFG 349 (395)
T ss_pred HHHHHHHHHHHHHHHhhh------hHH--HHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhh
Confidence 666666566555554431 111 111 24444445555555555555443 44566777888999999999999
Q ss_pred HHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040 261 AFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF 305 (338)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (338)
|.+++.+.| ...+|...+..++...++..+..+
T Consensus 350 P~l~G~lhD------------a~gsw~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 350 PWLFGFLHD------------ATGSWSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred hhhHhHHHH------------hcCChHHHHHHHHHHHHHHHHHHh
Confidence 999999986 566898888888777777666655
No 180
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.12 E-value=8.4e-10 Score=98.20 Aligned_cols=131 Identities=15% Similarity=0.155 Sum_probs=77.7
Q ss_pred hhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHHhh
Q 036040 119 QNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILID-IIGRVTIQLIGFFFMTVFMLALAIP 197 (338)
Q Consensus 119 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~grr~~~~~~~~~~~~~~~~~~~~ 197 (338)
...+.|.+.++.+.++.+ .........++...+....+++.| |++.++.+..+.++.++...++...
T Consensus 227 ~~~~~p~~~~~~~~~~~~------------~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~ 294 (400)
T PRK11646 227 VMLMLPIMVNDIAGSPSA------------VKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV 294 (400)
T ss_pred HHHhhhhhHHhhcCCchH------------HHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh
Confidence 345678888775544432 112233333333333333455554 5666666666665555555444433
Q ss_pred hhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 036040 198 YHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQ 269 (338)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~ 269 (338)
. + ...........+.+.....+...+++.+..|++.|++++|+.+....+|..++|.+.+.+.+
T Consensus 295 ~-------~-~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~ 358 (400)
T PRK11646 295 S-------N-LQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFD 358 (400)
T ss_pred h-------h-HHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHH
Confidence 2 1 11122222222222223334556778899999999999999999999999999999999985
No 181
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.12 E-value=2.3e-09 Score=96.23 Aligned_cols=146 Identities=14% Similarity=0.076 Sum_probs=111.0
Q ss_pred HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeee
Q 036040 152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFI 231 (338)
Q Consensus 152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (338)
...+..++.+++.+.++.+.||+.-.+.+....+..++..++.... .....+++..++.+.+..+.+|....
T Consensus 86 ~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~--------~s~~~~ialr~llGl~es~~wP~~~~ 157 (495)
T KOG2533|consen 86 LDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV--------HSFPGLIALRFLLGLFESGGWPGVVA 157 (495)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHHHHhcccchHHHH
Confidence 6667788888899999999999995555554433333333222222 22556677777777777888888889
Q ss_pred eecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccC
Q 036040 232 VPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEP 310 (338)
Q Consensus 232 ~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~ 310 (338)
+++.+|.++.|+.-+|+.++...+|+++|+++...+.++.. .....||++.|++-+++.++..++.+ ++|+.
T Consensus 158 ~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~-------~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~ 230 (495)
T KOG2533|consen 158 ILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNG-------SGGLAGWRWLFIIEGVITLVLGIVVFFFLPDN 230 (495)
T ss_pred HHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcC-------CCCcCCceeehhHHHHHHHHHHheEEEEecCC
Confidence 99999999999999999999999999999999888643111 12567999999999999998888877 88875
Q ss_pred CC
Q 036040 311 NG 312 (338)
Q Consensus 311 ~~ 312 (338)
..
T Consensus 231 P~ 232 (495)
T KOG2533|consen 231 PS 232 (495)
T ss_pred hh
Confidence 54
No 182
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.11 E-value=4e-09 Score=94.49 Aligned_cols=199 Identities=13% Similarity=-0.058 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHhHhhhhhhccHHHHHHHc--cCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhc-hH
Q 036040 101 HLLGTASTWLLLDVSYFSQNLFQKEIFTAV--GWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIG-RV 177 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-rr 177 (338)
.+..+++..++.-++++.+..|.+.+..+. +-++.. -..+.+....+.+......+...+.+++-.++.+|+| ||
T Consensus 259 ~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~--~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k 336 (477)
T TIGR01301 259 PVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQ--GAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGK 336 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 444556666666666777777777776652 322222 1234444445666666667776777888899999998 47
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcc---c----------ccchhhHHHHHHHHHHhhccCccceeeeeecccCCcc--ch
Q 036040 178 TIQLIGFFFMTVFMLALAIPYHHWI---Q----------KHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR--FR 242 (338)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~---~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~R 242 (338)
.+..++.++.++++....+...... . +.......++.....+..-....+++++++++..|++ ..
T Consensus 337 ~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~ 416 (477)
T TIGR01301 337 RLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQ 416 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCC
Confidence 7778887777777766654432100 0 0000133344444445555555778999999999954 44
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCC
Q 036040 243 STCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNG 312 (338)
Q Consensus 243 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~ 312 (338)
|..+|+.|.+..+.+++..+..+.+.+..+ .+...++.+.++..+++.++.+ .+|+++.
T Consensus 417 G~~mgilN~~I~lpQii~sl~~g~~~~~~g-----------~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 417 GLSMGVLNLAIVIPQIIVSLGSGPWDQLFG-----------GGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 899999999999999999988777554322 1345567777788888877777 7787653
No 183
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.10 E-value=5.9e-10 Score=100.93 Aligned_cols=130 Identities=14% Similarity=0.070 Sum_probs=85.7
Q ss_pred HccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhccc-c-cc
Q 036040 129 AVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQ-K-HN 206 (338)
Q Consensus 129 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~ 206 (338)
.+|+++...+. ......++.+++..+.+.+.+|++.|+++.++.++.+++.+........+.. . .+
T Consensus 282 ~lG~s~~~~G~------------~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~ 349 (468)
T TIGR00788 282 CLPGGPSFSGM------------SKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGIS 349 (468)
T ss_pred cCCCCcchhhh------------HHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCC
Confidence 46788876333 5556678888899999999999999999998877776655443221111110 0 01
Q ss_pred hhhHHHHHHHH-HHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 036040 207 STGFVVMYALT-FFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQ 271 (338)
Q Consensus 207 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 271 (338)
....+....++ ........ .....++++..|++.+++.+++.+.+.++|..+++.+.+.+.+..
T Consensus 350 ~~~~~~~~~~l~~~~~g~~~-~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~ 414 (468)
T TIGR00788 350 DEVFVLGDSIIAEVLAQLKF-MPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETI 414 (468)
T ss_pred CeeeeeehhHHHHHHHHHHH-ccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 11111111111 11222222 234678899999999999999999999999999999888887544
No 184
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.10 E-value=4.3e-09 Score=94.60 Aligned_cols=113 Identities=13% Similarity=0.027 Sum_probs=87.6
Q ss_pred HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeee
Q 036040 152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFI 231 (338)
Q Consensus 152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (338)
......++.+++.+++++++||+|+|+.+..+.++.+++.+++.+... .......+..++.+.+..+.....++
T Consensus 265 ~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~l~gi~~~~~~~~~~a 338 (428)
T PF13347_consen 265 FMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP------GSPWLVLILFILAGIGYGAFFVIPWA 338 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh------hhHHHHHHHHHHhHhhhccccccccc
Confidence 455677888889999999999999999999998888887777665541 22444555555555556666788899
Q ss_pred eecccCC-------ccchhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 036040 232 VPAEIFP-------ARFRSTCHGISAAAGKAGAIIGAFGFLYAAQD 270 (338)
Q Consensus 232 ~~~e~~p-------~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 270 (338)
+.+|+.+ .+..|...|+.++...++..+++.+.+.+.+.
T Consensus 339 ~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~ 384 (428)
T PF13347_consen 339 MLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL 384 (428)
T ss_pred ccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999987 34458888999999999999999998888753
No 185
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.10 E-value=6.3e-10 Score=101.18 Aligned_cols=139 Identities=13% Similarity=0.059 Sum_probs=102.2
Q ss_pred HHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceee
Q 036040 151 AQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTF 230 (338)
Q Consensus 151 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (338)
...+...+-.++.++++|.++||+.||++++.+-++..+..+++.+.... +. ...+.++++.++.+.+.....|...
T Consensus 49 lv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~--~~-~~~~~Ll~~~fl~g~~~a~~~PA~~ 125 (524)
T PF05977_consen 49 LVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFF--GL-LSPWLLLILTFLLGIGSAFFNPAWQ 125 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHh--Cc-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566667788899999999999999999988877666655544311 11 2233444444555555555567788
Q ss_pred eeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040 231 IVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF 305 (338)
Q Consensus 231 ~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (338)
+++.|+.|++....+.++.....++..++||.+.+.+. ...|...+|.+-++..++......
T Consensus 126 A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lv-------------a~~G~~~~f~inalsfl~~i~~l~ 187 (524)
T PF05977_consen 126 AIIPELVPKEDLPAANALNSISFNIARIIGPALGGILV-------------AFFGAAAAFLINALSFLISILALL 187 (524)
T ss_pred HHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999988 567778888777666555444433
No 186
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.10 E-value=1.1e-09 Score=97.00 Aligned_cols=157 Identities=15% Similarity=0.010 Sum_probs=99.7
Q ss_pred HHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHH
Q 036040 107 STWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFF 186 (338)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~ 186 (338)
+.++.....+.....++|.++++.|++..+ .........+...++.++.|.++||+||+.........
T Consensus 11 ~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~------------ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 78 (382)
T TIGR00902 11 LGFFGYFCAYGIFLPFFPAWLKGIGLGEEM------------IGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLAL 78 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 334444445555667788999998887765 33366666777788899999999999986543222211
Q ss_pred HH-HHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 036040 187 MT-VFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFL 265 (338)
Q Consensus 187 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~ 265 (338)
.. +..+.+.... +....+++...+.+.+.....+...++..+. .+.|++.+|.....+.+|.+++|.+.+
T Consensus 79 ~~~l~~~~~~~~~-------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g 149 (382)
T TIGR00902 79 ASAIFAAAFSAGA-------HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFG 149 (382)
T ss_pred HHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHH
Confidence 11 1111111111 1233333333333333333445555555443 567899999999999999999999999
Q ss_pred HhhhccccCCCCCCCCCCcchHHHHHHHHHHH
Q 036040 266 YAAQDQDKSKADPGYPAGIGIKNTLFLLAAVN 297 (338)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (338)
.+. +..||+..|.+.+...
T Consensus 150 ~l~-------------~~~g~~~~f~~~~~~~ 168 (382)
T TIGR00902 150 GLI-------------GMFDEQNILAILTAGL 168 (382)
T ss_pred HHH-------------HHcChhHHHHHHHHHH
Confidence 998 5789999887766553
No 187
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.09 E-value=3.3e-12 Score=115.54 Aligned_cols=148 Identities=20% Similarity=0.183 Sum_probs=113.4
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccce
Q 036040 149 ARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNST 228 (338)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (338)
.........++.++|++++|+++||+|||+.++.+.++..++.++.++...+ .....+....++.+++.++..+.
T Consensus 48 ~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~R~~~G~~~g~~~~~ 122 (451)
T PF00083_consen 48 SSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSY-----NNFWMLLIGRFLIGFGIGGAYVV 122 (451)
T ss_pred HHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccc-----ccccccccccccccccccccccc
Confidence 4456778899999999999999999999999999988888888777766521 12445555666677777777788
Q ss_pred eeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecc
Q 036040 229 TFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVP 308 (338)
Q Consensus 229 ~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (338)
...++.|..|++.|+...++.+....+|..++..+....... .+..+|+..+.+.++++++..+..+++|
T Consensus 123 ~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~----------~~~~~Wr~~~~~~~~~~l~~~~~~~~~p 192 (451)
T PF00083_consen 123 SPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY----------SDNWGWRILLIFGAIPSLLVLLLRFFLP 192 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccc----------cccccccccccccccccccccccccccc
Confidence 889999999999999999998888777877777665544210 0235699988888878777766666889
Q ss_pred cCC
Q 036040 309 EPN 311 (338)
Q Consensus 309 e~~ 311 (338)
|+.
T Consensus 193 ESP 195 (451)
T PF00083_consen 193 ESP 195 (451)
T ss_pred ccc
Confidence 973
No 188
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.08 E-value=1.1e-08 Score=93.29 Aligned_cols=196 Identities=17% Similarity=0.173 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHhHhhhhhhccHHHHHHHc-cCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchH-HH
Q 036040 102 LLGTASTWLLLDVSYFSQNLFQKEIFTAV-GWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRV-TI 179 (338)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr-~~ 179 (338)
+....++.+.....+|+...+.|.....+ +-++.... ..........++..+|.++.|.+..+++|- +.
T Consensus 312 ~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~---------~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~ 382 (599)
T PF06609_consen 312 FAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISIT---------EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQ 382 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccc---------eeehhhhhHHHHHHHHHHHHHHHHHHccchhHH
Confidence 44445566667777888888888766653 22221100 122355566667777888889999888864 44
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHH
Q 036040 180 QLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAII 259 (338)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~ 259 (338)
++++.+++.+++.+++... .++... .+.+.++.+++.++......+.++-..|.+.-+++.|+..++..+|+.+
T Consensus 383 li~~~~~~ta~~Gama~~~-----~~n~~~-~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsI 456 (599)
T PF06609_consen 383 LIFGSVLMTAFCGAMAAVR-----PDNKNA-AIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSI 456 (599)
T ss_pred HHHHHHHHHHHHHHHHHcc-----CCCcch-HHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHH
Confidence 4566555554444443322 111111 1222233333333333344456666789999999999999999999999
Q ss_pred HHHHHHHhhhccccC------------------------------C-----CCCCCCCC--------------cchHHHH
Q 036040 260 GAFGFLYAAQDQDKS------------------------------K-----ADPGYPAG--------------IGIKNTL 290 (338)
Q Consensus 260 ~~~~~~~~~~~~~~~------------------------------~-----~~~~~~~~--------------~~~~~~~ 290 (338)
+..++..+....-.. . .-|+.... .+++.+|
T Consensus 457 g~aIy~~I~~n~~~~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aYa~ay~~V~ 536 (599)
T PF06609_consen 457 GYAIYNAIFTNKLPKELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAYAHAYRYVY 536 (599)
T ss_pred HHHHHHHHHHhhhhHhHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988876554211000 0 00111111 3577888
Q ss_pred HHHHHHHHHhHhheeecccCCC
Q 036040 291 FLLAAVNVLGLLFTFLVPEPNG 312 (338)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~e~~~ 312 (338)
+....++.++++..+++++.++
T Consensus 537 ~~siaFG~vaiiaa~fl~d~~~ 558 (599)
T PF06609_consen 537 YSSIAFGVVAIIAALFLGDIDK 558 (599)
T ss_pred HHHHHHHHHHHHHHHHcCChHH
Confidence 8888888888888888877654
No 189
>PRK09848 glucuronide transporter; Provisional
Probab=99.07 E-value=1e-09 Score=99.22 Aligned_cols=113 Identities=14% Similarity=0.037 Sum_probs=76.2
Q ss_pred HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeee
Q 036040 152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFI 231 (338)
Q Consensus 152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (338)
......++.+++.++.+++.||+|+|+.+.++.+++.++.+.+.+.. . ..........++.+.+.....+..++
T Consensus 269 ~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~-----~-~~~~~~~~~~~l~g~G~~~~~~~~~a 342 (448)
T PRK09848 269 VLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVS-----V-WSLPVALVALAIASIGQGVTMTVMWA 342 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC-----c-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566777888999999999999999998877666655554321 1 11222222223333333444455667
Q ss_pred eecccCCc-------cchhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 036040 232 VPAEIFPA-------RFRSTCHGISAAAGKAGAIIGAFGFLYAAQD 270 (338)
Q Consensus 232 ~~~e~~p~-------~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 270 (338)
+.+|..|. +.+|...|+.++...+|..+++.+.+.+.+.
T Consensus 343 l~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~ 388 (448)
T PRK09848 343 LEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL 388 (448)
T ss_pred HHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777764 3568899999999999999999999887653
No 190
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.05 E-value=8.2e-09 Score=91.77 Aligned_cols=111 Identities=14% Similarity=0.061 Sum_probs=62.8
Q ss_pred HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeee
Q 036040 152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFI 231 (338)
Q Consensus 152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (338)
......++.+++..+.+++.||++++...... .+.+..+....... . .. .............+++.....+....
T Consensus 248 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~-~~-~~~~~~~~~~~~~~~g~~~~~~~~~~ 322 (394)
T PRK11652 248 LFILPIPAAFFGAWFAGRPNKRFSTLMWQSVI--CCLLAGLLMWIPGW-F-GV-MNVWTLLVPAALFFFGAGMLFPLATS 322 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-h-cc-ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667777778888888888743332222 11111111111110 0 00 11122222223333333334556666
Q ss_pred eecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 036040 232 VPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAA 268 (338)
Q Consensus 232 ~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~ 268 (338)
+..|.+| +.++++.++.+....+|+.+++.+.+.+.
T Consensus 323 ~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~ 358 (394)
T PRK11652 323 GAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLP 358 (394)
T ss_pred HHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 7778887 57899999999999999999999988875
No 191
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.05 E-value=4.7e-09 Score=91.39 Aligned_cols=141 Identities=15% Similarity=0.068 Sum_probs=99.5
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccce
Q 036040 149 ARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNST 228 (338)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (338)
-+...+...+..++...+..++.+|+|.|+.++++..++++=.++.++... ...+...-.+-+.-.......
T Consensus 261 ~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~--------~~~i~~~klLH~~e~~l~lva 332 (412)
T PF01306_consen 261 YGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATN--------PWVISLIKLLHALEFPLLLVA 332 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--S--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcc--------hHHHHHHHHHHHHHHHHHHHH
Confidence 344566777778888889999999999999999998888777777776552 233333333333222222233
Q ss_pred eeeeecccCCccchhhhHHHH-HHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-e
Q 036040 229 TFIVPAEIFPARFRSTCHGIS-AAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-L 306 (338)
Q Consensus 229 ~~~~~~e~~p~~~R~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 306 (338)
..-|+++.+|++..++...+. +....+|.++.+.+.|.+. +..|++..|++.+.+.++..++.. .
T Consensus 333 ~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~ly-------------d~~G~~~tylimg~iv~~~~li~~f~ 399 (412)
T PF01306_consen 333 AFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLY-------------DRIGFQHTYLIMGLIVLPFTLISAFT 399 (412)
T ss_dssp HHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhH-------------hhcCcHHHHHHHHHHHHHHHHHheee
Confidence 456889999999999998885 5677889999999999998 688999899888888777666665 4
Q ss_pred cccC
Q 036040 307 VPEP 310 (338)
Q Consensus 307 ~~e~ 310 (338)
+++.
T Consensus 400 l~~~ 403 (412)
T PF01306_consen 400 LKKD 403 (412)
T ss_dssp S--S
T ss_pred ecCC
Confidence 5443
No 192
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=99.03 E-value=9.3e-10 Score=96.18 Aligned_cols=176 Identities=16% Similarity=0.063 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHhHhhhhhhccHHHHHHH-cc----CCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHh-h
Q 036040 101 HLLGTASTWLLLDVSYFSQNLFQKEIFTA-VG----WLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDI-I 174 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~ 174 (338)
.+..++..-+..-+.||++...+..|+.. .+ +++++ ......+...+.. ...+++||++|| +
T Consensus 22 ~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~-----------A~~l~~~y~slVY-~t~i~GG~laDr~L 89 (498)
T COG3104 22 GLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETH-----------ATGLFSAYGSLVY-LTPIIGGWLADRVL 89 (498)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHh-----------hHHHHHHHHHHHH-HHHHHHHHHHHHhc
Confidence 44556666677778999999888887765 33 44433 1222233333333 356689999999 5
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCcc--chhhhHHHHHHH
Q 036040 175 GRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR--FRSTCHGISAAA 252 (338)
Q Consensus 175 grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~R~~~~~~~~~~ 252 (338)
|+|+.++.+.+++.++.++++.... ..... +.+...+...+.+..-+....+++|++|++ .|..+.++.++.
T Consensus 90 G~~~tI~lGail~~iGh~~L~~~~~-----~~~~g-l~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~ 163 (498)
T COG3104 90 GTRRTIVLGAILMAIGHLVLAISSV-----SGPGG-LYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMG 163 (498)
T ss_pred chhHHHHHHHHHHHHHHHHHhcccc-----ccccH-HHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEE
Confidence 9999999999999998888876530 01122 222333333556666677778899999764 478888999999
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeec
Q 036040 253 GKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLV 307 (338)
Q Consensus 253 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (338)
.++|++++|.+.+++. ..+||+..|...++-..++++..+..
T Consensus 164 iNiGsl~~p~i~~~~~-------------~~~g~~~gF~~aavGm~~gl~~f~~~ 205 (498)
T COG3104 164 INIGSLIAPIITGLLA-------------INYGWHVGFGLAAVGMIIGLVIFLLG 205 (498)
T ss_pred eehHHHHHHHHHHHHH-------------HhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999998 68899999988877777776655443
No 193
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=99.02 E-value=3.4e-08 Score=87.07 Aligned_cols=115 Identities=18% Similarity=0.128 Sum_probs=85.4
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccce
Q 036040 149 ARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNST 228 (338)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (338)
..........+.+++.++...+.+|+|+|+++.++.++.+++.+++.+... +.....++..++.+.+.....+.
T Consensus 274 ~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~------~~~~l~~~~~~i~~~g~~~~~~l 347 (467)
T COG2211 274 AYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPA------GSVVLIVVALIIAGVGTGIANPL 347 (467)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcC------cchHHHHHHHHHHHHHhhccccc
Confidence 334555556666677889999999999999999998887777776665541 33444555545555566667788
Q ss_pred eeeeecccCC-------ccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 036040 229 TFIVPAEIFP-------ARFRSTCHGISAAAGKAGAIIGAFGFLYAAQ 269 (338)
Q Consensus 229 ~~~~~~e~~p-------~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~ 269 (338)
.|++++|..+ .|.-|...|...++.-+|..++..+.+++..
T Consensus 348 ~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~ 395 (467)
T COG2211 348 PWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILG 395 (467)
T ss_pred cHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998864 3445667788888889999999999988874
No 194
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.00 E-value=9.8e-09 Score=91.76 Aligned_cols=144 Identities=10% Similarity=-0.095 Sum_probs=69.2
Q ss_pred HHHHhHhhhhhhccHHHHHHHc-cCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHH
Q 036040 109 WLLLDVSYFSQNLFQKEIFTAV-GWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFM 187 (338)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~ 187 (338)
.......+++...+.|.++++. |+++.+ ..........+.++++.+.+.+.++.++++.......+.
T Consensus 227 ~~~~~~~~~~~~~~~P~~l~~~~g~s~~~------------~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 294 (413)
T PRK15403 227 LSLSYIPMMSWVAVSPVILIDAGGMTTSQ------------FAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQ 294 (413)
T ss_pred HHHHHHHHHHHHHhChHHHHHhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHH
Confidence 3344445566667788888774 666544 222444455566666666666654443333332222222
Q ss_pred HHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 036040 188 TVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYA 267 (338)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~ 267 (338)
.++..++....... . +..........+.+.+.....+...... ..-....+|++.++.+.....+...++...+++
T Consensus 295 ~ig~~l~~~~~~~~--~-~~~~~~~~~~~l~~~G~~~~~p~~~~~a-l~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~ 370 (413)
T PRK15403 295 LVGLALLIVGNLLW--P-HVWLWSVLGTSLYAFGIGLIFPTLFRFT-LFSNNLPKGTVSASLNMVILMVMAVSVEIGRWL 370 (413)
T ss_pred HHHHHHHHHHHHHc--c-ccHHHHHHHHHHHHHHHHHHhHHHHHHH-hccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222111000 1 1111111222222222222222232111 111222479999999998888889999998888
Q ss_pred h
Q 036040 268 A 268 (338)
Q Consensus 268 ~ 268 (338)
.
T Consensus 371 ~ 371 (413)
T PRK15403 371 W 371 (413)
T ss_pred H
Confidence 6
No 195
>PRK11462 putative transporter; Provisional
Probab=99.00 E-value=6.6e-09 Score=94.01 Aligned_cols=113 Identities=15% Similarity=0.035 Sum_probs=65.8
Q ss_pred HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeee
Q 036040 152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFI 231 (338)
Q Consensus 152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (338)
......++.+++.+++++++||+|+|+.+..+..+.++..+++.+.. ..+.....+ ..++.+++.....+..++
T Consensus 268 ~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~l~g~~~~~~~~l~~~ 341 (460)
T PRK11462 268 FLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVP-----MQASITMFV-FIFVIGVLHQLVTPIQWV 341 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc-----hhHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 44556677788889999999999999887655443333232222111 111111222 222223333333444566
Q ss_pred eecccCC-----ccchhh--hHHHHHHHHHHHHHHHHHHHHHhhhc
Q 036040 232 VPAEIFP-----ARFRST--CHGISAAAGKAGAIIGAFGFLYAAQD 270 (338)
Q Consensus 232 ~~~e~~p-----~~~R~~--~~~~~~~~~~~g~~~~~~~~~~~~~~ 270 (338)
+.+|..+ +..|.. ..+...+...+|..+++.+.+.+.+.
T Consensus 342 m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~ 387 (460)
T PRK11462 342 MMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAY 387 (460)
T ss_pred HHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777655 224444 44565688899999999998888753
No 196
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=99.00 E-value=1.2e-08 Score=85.70 Aligned_cols=141 Identities=18% Similarity=0.146 Sum_probs=105.3
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccce
Q 036040 149 ARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNST 228 (338)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (338)
..+++.....+..+++..+|.++|++|||+.+....++.++...+-+.... ...+..+....+++.++ .|.
T Consensus 115 ~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spn--------f~~L~~f~~l~~~g~gg-~pv 185 (528)
T KOG0253|consen 115 APLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPN--------FASLCVFRALWGFGVGG-LPV 185 (528)
T ss_pred hhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCC--------eehhhHHHHHHhccCCC-ccH
Confidence 334677778899999999999999999999998887766666555544432 23333344444443344 677
Q ss_pred eeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecc
Q 036040 229 TFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVP 308 (338)
Q Consensus 229 ~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (338)
..++-.|..|...|..-+-.. ++..+|.++...+....+ .+.||++.+...+....+...+.+++|
T Consensus 186 ~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm-------------~~~gwr~~l~~~~~pl~~~a~f~~w~~ 251 (528)
T KOG0253|consen 186 DSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVM-------------SNFGWRYLLFTSSTPLMFAARFLVWVY 251 (528)
T ss_pred hHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHH-------------HhhhHHHHHHHHHhHHHHHHHHHhhcc
Confidence 777789999999999877666 777889999998888777 678999888777777777777777999
Q ss_pred cCCC
Q 036040 309 EPNG 312 (338)
Q Consensus 309 e~~~ 312 (338)
|+.+
T Consensus 252 ESpR 255 (528)
T KOG0253|consen 252 ESPR 255 (528)
T ss_pred cCcc
Confidence 9754
No 197
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.99 E-value=4.9e-09 Score=85.48 Aligned_cols=144 Identities=15% Similarity=0.063 Sum_probs=96.6
Q ss_pred HHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHH
Q 036040 110 LLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTV 189 (338)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 189 (338)
.......|.+..|.|.+.+++|+++++.+. +.....++..+ +++.|.+.|++|.+.++.++.+...+
T Consensus 12 ~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~------------l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~ 78 (250)
T PF06813_consen 12 QLCSGTTYTFSAYSPQLKSRLGYSQSQLNT------------LSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFV 78 (250)
T ss_pred HHhcCcccchhhhhHHHHHHhCCCHHHHHH------------HHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 344557888999999999999999877322 55555666655 47789999999999999999888888
Q ss_pred HHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 036040 190 FMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAA 268 (338)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~ 268 (338)
+...+......... ..+.+.+.+.....+...............+.|| +.||++.|+.-.+..+++.+-..+...+.
T Consensus 79 GY~~~~l~~~~~i~-~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f 155 (250)
T PF06813_consen 79 GYGLLWLAVSGRIP-SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFF 155 (250)
T ss_pred HHHHHHHHHhCccC-ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHc
Confidence 87777655432211 1222333222222222222222333334557888 57999999999998888888777777765
No 198
>PRK09669 putative symporter YagG; Provisional
Probab=98.99 E-value=6.8e-09 Score=93.79 Aligned_cols=113 Identities=11% Similarity=0.055 Sum_probs=74.6
Q ss_pred HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeee
Q 036040 152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFI 231 (338)
Q Consensus 152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (338)
......+..+++.+++++++||+|+|+.+.++.++.+++...+.+.. . +......+..++.+.+.....+..++
T Consensus 269 ~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~i~g~~~~~~~~~~~a 342 (444)
T PRK09669 269 FLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIP-----P-SNVWLIFALNILFNFIQNLTTPLQWS 342 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC-----c-chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777888999999999999999887655544333222211 1 11222333333344444455577788
Q ss_pred eecccCC-------ccchhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 036040 232 VPAEIFP-------ARFRSTCHGISAAAGKAGAIIGAFGFLYAAQD 270 (338)
Q Consensus 232 ~~~e~~p-------~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 270 (338)
+++|..+ .+..|...|..++...+|..+++.+.+.+.+.
T Consensus 343 m~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~ 388 (444)
T PRK09669 343 MFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAW 388 (444)
T ss_pred HHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888875 33456677888889999999999999988753
No 199
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.99 E-value=7.1e-09 Score=89.66 Aligned_cols=123 Identities=12% Similarity=-0.031 Sum_probs=67.0
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHhhchH----HHHHHHHHHHHHHHHHHHhhhhhcc-cccchhhHHHHHHHHHHhhcc
Q 036040 149 ARAQTLVALCGLIPGYWITVILIDIIGRV----TIQLIGFFFMTVFMLALAIPYHHWI-QKHNSTGFVVMYALTFFFANF 223 (338)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 223 (338)
+.++..+...++.+|.+++|.++||+-|+ .......+.++.+..+......... .........+++.+..-....
T Consensus 285 ~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~ 364 (493)
T KOG1330|consen 285 TLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISW 364 (493)
T ss_pred chhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 56678888889999999999999995331 1222222222221111111000000 011112222222222222222
Q ss_pred CccceeeeeecccCCccchhhhHHHHHHHHHH-HHHHHHHHHHHhhhcc
Q 036040 224 GPNSTTFIVPAEIFPARFRSTCHGISAAAGKA-GAIIGAFGFLYAAQDQ 271 (338)
Q Consensus 224 ~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~ 271 (338)
..+++..-+..|+.|++.|.+++++...+..+ |.+-+|.+.+.+.+..
T Consensus 365 ~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 365 FNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred cccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence 22344445678899999999999999877766 5566666888887644
No 200
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.96 E-value=5.3e-09 Score=92.82 Aligned_cols=179 Identities=15% Similarity=0.044 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHH-HHHHHHhccchhHHHH-HHHHHhhchHHH
Q 036040 102 LLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARA-QTLVALCGLIPGYWIT-VILIDIIGRVTI 179 (338)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-g~l~d~~grr~~ 179 (338)
...+...++.+.+.+.....+.|.++++.|.+..+ .+.. ......+..++.+++. ++..||+|||+.
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~-----------iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~ 71 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTA-----------LAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRS 71 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHH-----------HHHHHHHHHHHHHHHHHHHHHhccccccCCcchh
Confidence 34556667788888888889999999999888765 2222 1234455565566666 557888999888
Q ss_pred HHHHHHHH-HHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHH
Q 036040 180 QLIGFFFM-TVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAI 258 (338)
Q Consensus 180 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~ 258 (338)
.++...+. +.+...+.... . ................+......+....+..|..+.+.++...+.......+|..
T Consensus 72 ~i~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~ 147 (390)
T TIGR02718 72 WVLPMQCLVSACLASLALVG--P--DVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFF 147 (390)
T ss_pred HHHHHHHHHHHHHHHHHcCC--c--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHH
Confidence 76554332 21222222111 0 0011112222222222233333344445567777777777777777777788888
Q ss_pred HHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecc
Q 036040 259 IGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVP 308 (338)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (338)
+++...+.+. +..||+..|++.+++.++..+..++.+
T Consensus 148 ~g~~~~~~l~-------------~~~gw~~~f~~~a~l~~~~~~~~~~~~ 184 (390)
T TIGR02718 148 GGGAGTLVLF-------------GKFGQRPAFLLVACVPLASLVCVLWLK 184 (390)
T ss_pred HHHHHHHHHH-------------HHhCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8888887877 578999999999888777666655443
No 201
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.95 E-value=9e-09 Score=83.36 Aligned_cols=145 Identities=11% Similarity=0.021 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHH
Q 036040 103 LGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQL 181 (338)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~ 181 (338)
+.+.++.++.....+-+....|.++++ +|+|+...+. +.+.......+.+++.|.++||+|++...+
T Consensus 267 w~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~------------i~s~vy~Isav~spvfg~i~Dk~G~n~~wv 334 (459)
T KOG4686|consen 267 WVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGN------------ILSTVYGISAVLSPVFGAISDKYGFNLWWV 334 (459)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccc------------hhhhhhhhhhhhhhhHHHhHhhhcceehhH
Confidence 334444445555555556666766655 7988876332 555556666778889999999999998877
Q ss_pred HHHHHHHHHH-HHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHH
Q 036040 182 IGFFFMTVFM-LALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIG 260 (338)
Q Consensus 182 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~ 260 (338)
.+..+..+.. ..+.+.. + +++..+..+.+....... ..|.+++-+.|.+.-|++.|+++.+.++|-.+.
T Consensus 335 ~~a~~~tl~~H~~l~Ft~--l----sPy~~m~~lGLsysllAc----slWP~va~~vpE~qLGTaygf~qsIqNLgla~i 404 (459)
T KOG4686|consen 335 ASACILTLLGHSGLFFTF--L----SPYTSMTFLGLSYSLLAC----SLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFI 404 (459)
T ss_pred HHHHHHHHHHhhhHHhhh--c----cHHHHHHHHhhhHHHHHH----HHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHH
Confidence 6643332221 1222221 1 223323222222222222 246667888999999999999999999999999
Q ss_pred HHHHHHhhh
Q 036040 261 AFGFLYAAQ 269 (338)
Q Consensus 261 ~~~~~~~~~ 269 (338)
|.+.+.+.+
T Consensus 405 ~Iiag~i~d 413 (459)
T KOG4686|consen 405 PIIAGFIAD 413 (459)
T ss_pred hhhhheeec
Confidence 999999985
No 202
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=98.95 E-value=4.4e-09 Score=95.31 Aligned_cols=174 Identities=13% Similarity=0.074 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHH
Q 036040 102 LLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQL 181 (338)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~ 181 (338)
.+..++.........+.+..+.+.+.++++.+..+ ..++..+......+.+++.+.+.||+|.|.+.+
T Consensus 48 ~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~------------~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i 115 (509)
T KOG2504|consen 48 VFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQ------------IAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMI 115 (509)
T ss_pred eHhHHHHHHhhhcchheehhhHHHHHHHhCCCccH------------HHHHHHHHHHHHHHhccHHHHHHhhcCchHHHH
Confidence 34444444444455555667778888887766654 334555555566667888999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHH
Q 036040 182 IGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGA 261 (338)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~ 261 (338)
.|.+++.+++++..+... .+.+.+...+..+.+....+.....+++. +.++.|+.+.|+......+|.++-|
T Consensus 116 ~G~~v~~~g~~lssF~~~-------i~~l~lt~gvi~G~G~~~~~~paiviv~~-YF~kkR~lA~Gia~~GsG~G~~~~~ 187 (509)
T KOG2504|consen 116 AGGLVAALGLLLSSFATS-------LWQLYLTFGVIGGLGLGLIYLPAVVILGT-YFEKKRALATGIAVSGTGVGTVVFP 187 (509)
T ss_pred HHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHhhccchhhhcchhhhhhh-HhHHHHHHHHhhhhccCCcceeeHH
Confidence 999999999999888773 23344444444444333333333344554 4567899999999999999999999
Q ss_pred HHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecc
Q 036040 262 FGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVP 308 (338)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 308 (338)
.+...+. +.+||+..+++++.+.+-+++... +-|
T Consensus 188 ~l~~~l~-------------~~~G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 188 PLLKYLL-------------SKYGWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred HHHHHHH-------------HHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9988888 689999999999988877766666 444
No 203
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=98.93 E-value=7.7e-09 Score=93.24 Aligned_cols=176 Identities=15% Similarity=0.055 Sum_probs=105.8
Q ss_pred hhhhhccHHHHHH-HccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHh----hchHH-HHHHHHHHHHH
Q 036040 116 YFSQNLFQKEIFT-AVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDI----IGRVT-IQLIGFFFMTV 189 (338)
Q Consensus 116 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~-~~~~~~~~~~~ 189 (338)
+.....+++.++. .+|+++.. .+....+..+...+..++.|+++|| +|||+ .++.+....++
T Consensus 15 ~~~~~~~l~~~~~~~~g~s~~~------------~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i 82 (437)
T TIGR00792 15 FAIVSTYLLFFYTDVLGLSAAF------------VGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSI 82 (437)
T ss_pred HHHHHHHHHHHHHHccCCCHHH------------HHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHH
Confidence 3334445555555 46777654 4457777788888899999999998 67744 56666666666
Q ss_pred HHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccC-CccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 036040 190 FMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIF-PARFRSTCHGISAAAGKAGAIIGAFGFLYAA 268 (338)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~ 268 (338)
+.+++....... ............++...+.........++..|+. +++.|++..++.+....+|+.+++.+.+.+.
T Consensus 83 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~ 160 (437)
T TIGR00792 83 VLVLLFTTPDFS--ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLV 160 (437)
T ss_pred HHHHHHhCCCCC--cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554432110 0011122222222222222222233456678876 5688999999988888888888777665554
Q ss_pred hccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCC
Q 036040 269 QDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPN 311 (338)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~ 311 (338)
....+ ..+..+|+..+.+.+++.++..+..+ ..+|++
T Consensus 161 ~~~~~------~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 161 SYFGG------GDDKFGWFMFALVLALIGVVSLIICFFGTKERY 198 (437)
T ss_pred HHhCC------CcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence 32110 01356899998888888777766554 667754
No 204
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.91 E-value=3.1e-08 Score=84.46 Aligned_cols=194 Identities=11% Similarity=0.022 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHH
Q 036040 102 LLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQL 181 (338)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~ 181 (338)
.+.....++...+.........|.+.+.++.+..+ +.........+.+++++..+++.+|+|+|+-++
T Consensus 15 ~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~------------a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~ 82 (422)
T COG0738 15 FVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFE------------ASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIV 82 (422)
T ss_pred HHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHH------------HHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHH
Confidence 34455555666667777788889988887777655 555777888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHH
Q 036040 182 IGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGA 261 (338)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~ 261 (338)
.++.++++++.++.-+... ..+..++...+..+.+..........+++.+.|++..+.-+.+...++.+|++++|
T Consensus 83 lgL~l~avg~~lF~pAa~~-----~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp 157 (422)
T COG0738 83 LGLLLYAVGAALFWPAASS-----KSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGP 157 (422)
T ss_pred HHHHHHHHHHHHHhhhhhh-----hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHH
Confidence 9999999988887643321 12333333333333333444566677889999998888889999999999999999
Q ss_pred HHHHHhhhccccCCCC-CC-----CCCCcchHHHHHHHHHHHHHhHhhee--ecccCCC
Q 036040 262 FGFLYAAQDQDKSKAD-PG-----YPAGIGIKNTLFLLAAVNVLGLLFTF--LVPEPNG 312 (338)
Q Consensus 262 ~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~e~~~ 312 (338)
.+...+...-.....+ +. ......++.++...+...++..+... ..|+.+.
T Consensus 158 ~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~ 216 (422)
T COG0738 158 LLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV 216 (422)
T ss_pred HHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc
Confidence 9999887410000000 00 00012366777777766665555544 4455443
No 205
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.76 E-value=1.3e-07 Score=80.63 Aligned_cols=158 Identities=15% Similarity=0.026 Sum_probs=104.4
Q ss_pred HHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHH
Q 036040 108 TWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFF 186 (338)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~ 186 (338)
..|+....--....|++.++.+ .|.+..+ +....+....+.++|.+++.++..|+...+.+....++
T Consensus 244 ~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~------------aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~ 311 (422)
T COG0738 244 AIFLYVGAEVAIGSFLVSYLEELLGLNEQQ------------AAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALI 311 (422)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCCccHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 3344434444556778888887 4444433 55577888888899999999999999999988887666
Q ss_pred HHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 036040 187 MTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLY 266 (338)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~ 266 (338)
..+.++..++... ...+......+.+....+|..++...+..|.+. . ..|.......+|+.+.|.+.++
T Consensus 312 ~ill~~~~~l~~g---------~v~~~~l~~ig~F~simfPTIfslal~~l~~~t-s-~~s~~l~maivGGAiiP~l~G~ 380 (422)
T COG0738 312 AILLLLAVALIGG---------VVALYALFLIGLFNSIMFPTIFSLALKNLGEHT-S-VGSGLLVMAIVGGAIIPPLQGV 380 (422)
T ss_pred HHHHHHHHHHhcC---------hHHHHHHHHHHHHhHHHHHHHHHHHHhccCccc-c-ccceeeeeheecchHHHHHHHH
Confidence 5555555555441 222333334444555667888888888888333 2 3333444556799999999999
Q ss_pred hhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhH
Q 036040 267 AAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGL 301 (338)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (338)
+. +..|....+.+...+|.+..
T Consensus 381 i~-------------d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 381 IA-------------DMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred HH-------------HhhhhHHHHHHHHHHHHHHH
Confidence 98 56676666665555555554
No 206
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=98.73 E-value=9.7e-08 Score=84.50 Aligned_cols=200 Identities=12% Similarity=-0.015 Sum_probs=120.2
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhch-
Q 036040 98 HGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGR- 176 (338)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr- 176 (338)
.||.++...+..+.....+.....-.-.|+++++.+.+. ..-++......++..+++++.|+...|.+.
T Consensus 32 ~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~----------~ffG~viaa~slg~~i~~liF~~Ws~k~~~~ 101 (488)
T KOG2325|consen 32 NWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATA----------TFFGLVIAASSLGHAIFSLIFGIWSNKTGSV 101 (488)
T ss_pred chHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCc----------chhhHHHHHHHHHHHhcchhhcccccccCCc
Confidence 344555555555555444433333333455553332222 123446666888999999999999999985
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHH
Q 036040 177 VTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAG 256 (338)
Q Consensus 177 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g 256 (338)
|+.++.+.+++.++.++.....+. .++...++++..++.+. +.+.....-.|++...-.+.|.++++.......+|
T Consensus 102 k~Pli~s~ii~~~g~llY~~l~~~---~~~~~y~mL~~R~l~Gv-g~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg 177 (488)
T KOG2325|consen 102 KKPLIVSFLIAIIGNLLYLALAYV---PNGVKYLMLVARILTGV-GVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLG 177 (488)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhc---ccchHHHHHHHHHHcCc-CcccHHHHHHHHHhccCccchHHHHHHhhhHHHHH
Confidence 667778888888888877433311 11233444444444443 44555677788888777888888888888777788
Q ss_pred HHHHHHHHHHhhhccccC-CCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCC
Q 036040 257 AIIGAFGFLYAAQDQDKS-KADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNG 312 (338)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~ 312 (338)
.++||.+...+....+++ ...++ ..-.-+..+-++.++..++.+++.+ +.+|...
T Consensus 178 ~ilGp~~q~~f~~Lg~~G~~i~~~-~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 178 IILGPTIQLAFTPLGEKGFMILPG-LIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred HHHhHHHHHHHhhhcCCceEEcCc-ceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 888888777665332211 11111 1112244556667777777777666 6666443
No 207
>PRK09669 putative symporter YagG; Provisional
Probab=98.72 E-value=7.8e-08 Score=86.92 Aligned_cols=177 Identities=16% Similarity=0.095 Sum_probs=102.2
Q ss_pred hHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHh----hchH-HHHHHHHHH
Q 036040 113 DVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDI----IGRV-TIQLIGFFF 186 (338)
Q Consensus 113 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr-~~~~~~~~~ 186 (338)
+..+.....|++.++.+ +|+++.. .+....+.-+...+..++.|+++|| +||| +.++++.+.
T Consensus 22 ~~~~~~~~~~l~~~~t~~~gls~~~------------~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~ 89 (444)
T PRK09669 22 NLVWQTVMLFLAYFYTDVFGLSAAI------------MGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIP 89 (444)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCHHH------------HHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHH
Confidence 33344445555655555 6777654 4446666777777888999999998 6774 555566555
Q ss_pred HHHHHHHHHhhhhhcccccchhhHHHH-HHHHHHhhccCccceeeeeecccC-CccchhhhHHHHHHHHHHHHHHHHHHH
Q 036040 187 MTVFMLALAIPYHHWIQKHNSTGFVVM-YALTFFFANFGPNSTTFIVPAEIF-PARFRSTCHGISAAAGKAGAIIGAFGF 264 (338)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~g~~~~~~~~ 264 (338)
.+++..++..... . .......+..+ ..+...+.. .......++.+|+. +++.|++..++......+|+.+++.+.
T Consensus 90 ~~i~~~l~f~~p~-~-~~~~~~~~~~~~~~l~~~~~t-~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~ 166 (444)
T PRK09669 90 FGVVCLLTFYTPD-F-GATGKIIYACVTYILLSLVYT-AINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIA 166 (444)
T ss_pred HHHHHHHHHhCCC-C-CcchHHHHHHHHHHHHHHHHH-hhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555543332221 1 11111222222 222222222 23333456788887 557899888888888888888887765
Q ss_pred HHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccC
Q 036040 265 LYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEP 310 (338)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~ 310 (338)
..+...... .....+|+..+.+.++++++..+..+ ..+|.
T Consensus 167 ~pl~~~~~~------~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~ 207 (444)
T PRK09669 167 LPLVDILGK------GDEQKGYFYAMMVMGLLGVVLFFCCFFMTKER 207 (444)
T ss_pred HHHHHHhCC------CchhhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Confidence 544432110 01245788888777777766655544 44553
No 208
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.63 E-value=5.8e-07 Score=80.52 Aligned_cols=65 Identities=9% Similarity=-0.081 Sum_probs=45.3
Q ss_pred hhccHHHHHH-HccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHH
Q 036040 119 QNLFQKEIFT-AVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGR-VTIQLIGFFFMTVFMLALA 195 (338)
Q Consensus 119 ~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~ 195 (338)
...+++.++. +.|++..+ .++......++.+++.+++|.++||+|| |+++.++.+..++...+..
T Consensus 21 ~~~~l~~~l~~~~g~s~~~------------iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~ 87 (418)
T TIGR00889 21 WLVTLGSYMSKTLHFSGAE------------IGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAA 87 (418)
T ss_pred HHHHHHHHHHHhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 3344555554 46777765 4457788889999999999999999965 7677766665555544444
No 209
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.63 E-value=8.4e-07 Score=83.31 Aligned_cols=80 Identities=13% Similarity=0.039 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHH-hccchhHHHHHHHHHhhc--hH
Q 036040 102 LLGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVAL-CGLIPGYWITVILIDIIG--RV 177 (338)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g--rr 177 (338)
++...+..++....++++..|+|.++++ +|+++.+ +........ .+.++|.+++|+++||++ .|
T Consensus 332 f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~------------ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~ 399 (633)
T TIGR00805 332 YMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAE------------ANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVK 399 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH------------HHHHhhhhhhhHHHHHHhhhhheeeeecccHH
Confidence 3445555566677788889999999986 6777655 222333333 355788999999999988 45
Q ss_pred HHHHHHHHHHHHHHHH
Q 036040 178 TIQLIGFFFMTVFMLA 193 (338)
Q Consensus 178 ~~~~~~~~~~~~~~~~ 193 (338)
+.+.++.+...+..++
T Consensus 400 ~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 400 KAAYFAICLSTLSYLL 415 (633)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666665555555433
No 210
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=98.62 E-value=1.1e-06 Score=78.75 Aligned_cols=137 Identities=23% Similarity=0.172 Sum_probs=106.2
Q ss_pred HHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecc
Q 036040 156 ALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAE 235 (338)
Q Consensus 156 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 235 (338)
..+..++.++..|.++||+|||..+....+.+.+...+..+.. ++.++ .....+......+...+++++
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~---------~~~~~--~~~l~g~~~~~~s~~~a~vad 139 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG---------YWFFL--LLGLSGGFSAIFSVGFAYVAD 139 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH---------HHHhh--hcccccchhhhhhhhhhheee
Confidence 3566677888899999999999999998877777666665543 22222 222222233445667789999
Q ss_pred cCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCCCC
Q 036040 236 IFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNGRS 314 (338)
Q Consensus 236 ~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~ 314 (338)
....+.|....|+.+.....+..++|.+.+.+. ...|....|.+.++..++..++.. ++||+...+
T Consensus 140 is~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~-------------~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~ 206 (463)
T KOG2816|consen 140 ISSEEERSSSIGLLSGTFGAGLVIGPALGGYLV-------------KFLGIALVFLIAAASGILSLLYMLLFLPESLQEK 206 (463)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------------HhcCchHHHHHHHHHHHHHHHHHhhccccccCcc
Confidence 999999999999999999999999999999998 678899999999999999988887 899976544
Q ss_pred hh
Q 036040 315 LE 316 (338)
Q Consensus 315 ~~ 316 (338)
.+
T Consensus 207 ~~ 208 (463)
T KOG2816|consen 207 ER 208 (463)
T ss_pred cc
Confidence 33
No 211
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.61 E-value=2.3e-07 Score=84.20 Aligned_cols=174 Identities=11% Similarity=-0.029 Sum_probs=102.4
Q ss_pred HHHHHHHHHHhHhhhhhhccHHHHHH-HccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhc-----h
Q 036040 103 LGTASTWLLLDVSYFSQNLFQKEIFT-AVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIG-----R 176 (338)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----r 176 (338)
......++..+.. +......+.+++ ++|.++.+. ........+...+ .+++|.++||++ |
T Consensus 29 ~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i------------~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~rR 94 (468)
T TIGR00788 29 AIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARY------------QRLVGLSSLGWAL-KPFAGVMSDTFPLFGYTK 94 (468)
T ss_pred HHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHH------------HHHHHHHHHHHHH-HHHHHHHHHhcCCCCccc
Confidence 3444456677776 444445555555 578888661 1233444444444 445999999997 6
Q ss_pred HHHHHHHHHHHH-HHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhh---HHHHHHH
Q 036040 177 VTIQLIGFFFMT-VFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTC---HGISAAA 252 (338)
Q Consensus 177 r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~---~~~~~~~ 252 (338)
|+.++++.++.+ ++...++.. .+......+..++..++........-.+..|..+ +.++.+ .++....
T Consensus 95 r~~l~~~~~l~~~~~~~~l~~~-------~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~ 166 (468)
T TIGR00788 95 RWYLVLSGLLGSAILYGLLPGK-------VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGA 166 (468)
T ss_pred hHHHHHHHHHHHHHHHHhcccc-------cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHH
Confidence 777776655542 222211111 1112222222333333333344566678889888 444433 3344444
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCC
Q 036040 253 GKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPN 311 (338)
Q Consensus 253 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 311 (338)
..+|..+++.+.+.+. +..+|+..|++.+++.++..+...+++|.+
T Consensus 167 ~~~G~~vg~~l~G~l~-------------~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~ 212 (468)
T TIGR00788 167 SATGGLISSLLGGPLL-------------DKTLTRILFLITAALLLLQLFVSNLSKERR 212 (468)
T ss_pred HHHHHHHHHHHHHHHH-------------HhcCcchHHHHHHHHHHHHHHHHHhccccc
Confidence 4589999999999987 577899999988888777755445778864
No 212
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.57 E-value=1.6e-07 Score=84.48 Aligned_cols=175 Identities=19% Similarity=0.102 Sum_probs=107.2
Q ss_pred hhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHH----hhchHHHHH-HHHHHHH
Q 036040 115 SYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILID----IIGRVTIQL-IGFFFMT 188 (338)
Q Consensus 115 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~grr~~~~-~~~~~~~ 188 (338)
.+.....+.+.++.+ +|.++.. .+....+.-+...+..++.|.++| |+|||+..+ ++.+..+
T Consensus 16 ~~~~~~~~~~~f~~~~~gl~~~~------------~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~ 83 (428)
T PF13347_consen 16 IWSLLSSYLLYFYTDVLGLSPAL------------AGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLA 83 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHH
Confidence 333344454554444 4776643 333555666677777889999999 789766544 5666666
Q ss_pred HHHHHHHhh-hhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCC-ccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 036040 189 VFMLALAIP-YHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFP-ARFRSTCHGISAAAGKAGAIIGAFGFLY 266 (338)
Q Consensus 189 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~R~~~~~~~~~~~~~g~~~~~~~~~~ 266 (338)
++..++... ...........+..+...++ ............++.+|+.+ ++.|.+..+.-..+..+|..+...+.+.
T Consensus 84 ~~~~llf~~~p~~~~~~~~~~~~~~~~~l~-~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~ 162 (428)
T PF13347_consen 84 LSFFLLFSPPPAGLSFTAKLVWLFVFYILF-DIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPI 162 (428)
T ss_pred HHHHHhhccccchhhhhhHHHHHHHHHHHH-HHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 665555533 21110011111222222223 33333334445678899987 5689999999999999988877777777
Q ss_pred hhhccccCCCCCCCCCC-cchHHHHHHHHHHHHHhHhhee-eccc
Q 036040 267 AAQDQDKSKADPGYPAG-IGIKNTLFLLAAVNVLGLLFTF-LVPE 309 (338)
Q Consensus 267 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~e 309 (338)
+.+..+.. +. .+|+....+.+++.+++.+..+ ..+|
T Consensus 163 l~~~~g~~-------~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 163 LVSWFGGG-------DTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred hhhhhccC-------ccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 66433221 22 2788888888888888777776 7788
No 213
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.56 E-value=1.6e-06 Score=79.12 Aligned_cols=113 Identities=14% Similarity=0.111 Sum_probs=74.4
Q ss_pred HHHhccchhHHHHHHHHHhhchHH-------HHHHHHHHHHHHHHHHHhhhh-hc-ccccchhhHHHHHHHHHHhhccCc
Q 036040 155 VALCGLIPGYWITVILIDIIGRVT-------IQLIGFFFMTVFMLALAIPYH-HW-IQKHNSTGFVVMYALTFFFANFGP 225 (338)
Q Consensus 155 ~~~~~~~~~~~~~g~l~d~~grr~-------~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~ 225 (338)
+..+..++.+++.+++.||+++|+ .+.+|.++++++++.++.... .. .+...+.++.+...++.+.+....
T Consensus 317 ~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~ 396 (489)
T PRK10207 317 LNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFI 396 (489)
T ss_pred HhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHH
Confidence 333445567777899999999886 366677776666554432111 11 111223333444444444444455
Q ss_pred cceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 036040 226 NSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYA 267 (338)
Q Consensus 226 ~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~ 267 (338)
.+....++.+..|++.++.++|+.+....+|+.++..+....
T Consensus 397 ~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 397 SALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred hHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566677888899999999999999999999999988877655
No 214
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.55 E-value=4.7e-07 Score=82.49 Aligned_cols=181 Identities=15% Similarity=0.029 Sum_probs=100.3
Q ss_pred HHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHH----hhch-HHHHHHH
Q 036040 110 LLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILID----IIGR-VTIQLIG 183 (338)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~gr-r~~~~~~ 183 (338)
+..+..+.....|++.|+.+ +|.++.. .+.+..+.-+...+..++.|+++| |+|| |+.++++
T Consensus 16 ~~~~~~~~~~~~~l~~yyt~v~Gls~~~------------vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g 83 (473)
T PRK10429 16 FGKDFAIGIVYMYLMYYYTDVVGLSVGL------------VGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIG 83 (473)
T ss_pred hHHhHHHHHHHHHHHHHHHHhcCCCHHH------------HHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhh
Confidence 33444555556666777666 4776644 344566677777788899999999 5698 5566666
Q ss_pred HHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccC-CccchhhhHHHHHHHHHHHHHHHHH
Q 036040 184 FFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIF-PARFRSTCHGISAAAGKAGAIIGAF 262 (338)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~g~~~~~~ 262 (338)
.+.++++..++..... . .......+..+..++...+.........++..|+. +++.|.+..++-..+..+|+.+.+.
T Consensus 84 ~i~~~i~~~llf~~p~-~-~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~ 161 (473)
T PRK10429 84 TLANSVVLFLLFSAHL-F-EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAG 161 (473)
T ss_pred hHHHHHHHHHHHcCCC-C-CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655555444422210 0 00111112222222222222222334456779988 5889999888877777777666655
Q ss_pred HHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccC
Q 036040 263 GFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEP 310 (338)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~ 310 (338)
+...+....+. ..+..+|.....+.+++.+++.+..+ ..+|.
T Consensus 162 ~~~~~~~~~g~------~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~ 204 (473)
T PRK10429 162 FTLPFVNYVGG------GDRGFGFQMFTLVLIAFFIVSTIITLRNVHEV 204 (473)
T ss_pred HHHHHHHHhCC------CchhhhHHHHHHHHHHHHHHHHHHHHcCceec
Confidence 54433221110 01233566666666666665555544 45664
No 215
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.53 E-value=2.2e-06 Score=80.14 Aligned_cols=173 Identities=14% Similarity=0.035 Sum_probs=106.6
Q ss_pred hhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHh-hchHHHHHHHHHHHHHHHH
Q 036040 115 SYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDI-IGRVTIQLIGFFFMTVFML 192 (338)
Q Consensus 115 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~ 192 (338)
.||++...+..++.+ +|++... .+.......++. -+..+++|+++|+ +||++.+.++.++..++..
T Consensus 2 syYGm~aiLvlYl~~~lg~~~~~-----------A~~i~~~f~~l~-yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~ 69 (654)
T TIGR00926 2 SYYGMRTILVLYFLNFLGFSEST-----------STVLFHTFTYLC-YLTPLIGAIIADGWLGKFKTILYLSIVYVVGHA 69 (654)
T ss_pred ceeecHHHHHHHHHHHcCCcHHH-----------HHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 356666665555544 4555433 122223333333 3456678999996 7999999999888888877
Q ss_pred HHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCcc---chhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 036040 193 ALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR---FRSTCHGISAAAGKAGAIIGAFGFLYAAQ 269 (338)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~R~~~~~~~~~~~~~g~~~~~~~~~~~~~ 269 (338)
++++..................+.+..++.++.-+...+...|.++++ .|.....+.++..++|+++++.+.+++..
T Consensus 70 llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~ 149 (654)
T TIGR00926 70 LLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRG 149 (654)
T ss_pred HHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776543110000011122223333444455566677778888888753 47788889999999999999999998863
Q ss_pred ccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040 270 DQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF 305 (338)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (338)
... .+....+|..+|.+.+++.+++++...
T Consensus 150 ~~~------~fg~~~~~~~aF~i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 150 DVG------CFGCQDCYPLAFGVPAILMILALIVFM 179 (654)
T ss_pred hhc------ccccCcchHHHHHHHHHHHHHHHHHHH
Confidence 110 000234688888888877777766543
No 216
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.51 E-value=1.1e-05 Score=73.49 Aligned_cols=111 Identities=17% Similarity=0.179 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhccc-ccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHH
Q 036040 181 LIGFFFMTVFMLALAIPYHHWIQ-KHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAII 259 (338)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~ 259 (338)
.+|.++.+++...+++....... ...+.++.+...++...+-....|....+..+..|++.||+.+|+......+|..+
T Consensus 353 ~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l 432 (475)
T TIGR00924 353 TLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLL 432 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777766666543211111 11234444445555555556667788889999999999999999999999999999
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhe
Q 036040 260 GAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFT 304 (338)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (338)
++.+..... ...++...|...++.+++..+..
T Consensus 433 ~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~ 464 (475)
T TIGR00924 433 GGYLATFGA-------------VPQGVTGVFGKIGLVTLLVGVVM 464 (475)
T ss_pred HHHHHHHHh-------------cccchhhHHHHHHHHHHHHHHHH
Confidence 988887765 34466666666665555544443
No 217
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.51 E-value=1.3e-06 Score=75.67 Aligned_cols=183 Identities=15% Similarity=0.057 Sum_probs=106.0
Q ss_pred HHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHH-HHH
Q 036040 103 LGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVT-IQL 181 (338)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~-~~~ 181 (338)
++..+.+......+|+....+...+.--|+.... ++.......+++++++.+.|.+.||.+.-+ +.+
T Consensus 269 ~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~------------aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~ 336 (480)
T KOG2563|consen 269 IILAICYGIGLGLFNSLSTLLNLALCPSGYEGVF------------AGYIGALMIVAGMLGALASGIIADKTKKFKLTTL 336 (480)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhccccccCCccc------------cchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 4445555555556666665554333333554433 445777788888899999999999987543 333
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHH
Q 036040 182 IGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGA 261 (338)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~ 261 (338)
+......++.+.+..... .. .....+.......+++..+..|+-.-+-.|..=+..-++..|+.+..+++-+++-.
T Consensus 337 v~~~~~~v~~~~l~~~t~---~~-~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~ 412 (480)
T KOG2563|consen 337 VLYLFALVGTLMLLTCTL---FL-GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILV 412 (480)
T ss_pred HHHHHHHHHHHHHHHhhc---cC-CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHH
Confidence 333333333222211111 11 22333444445556666777888888888876555557888999998888888888
Q ss_pred HHHHHhhhccccCCCCCCCCCCcc-hHHHHHHHHHHHHHhHhheeecccCC
Q 036040 262 FGFLYAAQDQDKSKADPGYPAGIG-IKNTLFLLAAVNVLGLLFTFLVPEPN 311 (338)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~ 311 (338)
++.+...+... ..+ +...-+..+..++++.++..+.++..
T Consensus 413 ~~~~~~~~~~~----------~~~~~~~~~i~~~~~~~l~~~lva~~r~~y 453 (480)
T KOG2563|consen 413 FIMGILAEDLG----------PPGNTFPANIFLTVSALLGAILVAFFRPDY 453 (480)
T ss_pred HHHHHHhhccC----------CCCCCccchhHhHHHHHHHHHHHhhhhhhH
Confidence 88777763111 012 23333344555555555555554443
No 218
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=98.47 E-value=6.5e-07 Score=79.08 Aligned_cols=155 Identities=14% Similarity=0.132 Sum_probs=110.2
Q ss_pred hhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhh
Q 036040 118 SQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIP 197 (338)
Q Consensus 118 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 197 (338)
.+..|+--.+++.|-.+.-.+ ...+....+-++..++.+++..|+|+-+++..++.+..+=.+.++..
T Consensus 389 lv~tFLfWHled~~~~~~LfG------------v~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L 456 (618)
T KOG3762|consen 389 LVFTFLFWHLEDLGGIKTLFG------------VVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL 456 (618)
T ss_pred HHHHHHHHHHhhcCCcceeee------------ehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh
Confidence 334445555677664444322 26677778888888999999999999999988877666666666655
Q ss_pred hhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHH-HHHHHHHHHHHHHhhhccccCCC
Q 036040 198 YHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAG-KAGAIIGAFGFLYAAQDQDKSKA 276 (338)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~ 276 (338)
.. ++.++-+-++.+......+..+-+|++...|++.|+++.++..... .+|-.+|+++.+.+.
T Consensus 457 ~n--------~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v-------- 520 (618)
T KOG3762|consen 457 QN--------PWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVV-------- 520 (618)
T ss_pred cC--------chheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhh--------
Confidence 42 2333333344444444445556688999999999999999987644 458888899988887
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040 277 DPGYPAGIGIKNTLFLLAAVNVLGLLFTF 305 (338)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (338)
..+|-+..|.++++.+++.+++..
T Consensus 521 -----~~fg~~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 521 -----ERFGARTTFRIFGIACLVTLALFI 544 (618)
T ss_pred -----eeehhHHHHHHHHHHHHHHHHHHH
Confidence 678888899988888877766554
No 219
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.47 E-value=2.7e-06 Score=73.75 Aligned_cols=122 Identities=12% Similarity=0.012 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccc
Q 036040 148 FARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNS 227 (338)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (338)
.+.+...++.+..++..+.+.|+.||+|-|....++....+++..+=........++............+..........
T Consensus 80 ~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~ 159 (480)
T KOG2563|consen 80 AADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILG 159 (480)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhc
Confidence 35567888888888999999999999999999999988888877766555432211111111222222222222222222
Q ss_pred eeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 036040 228 TTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQ 269 (338)
Q Consensus 228 ~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~ 269 (338)
.+.-+..-+||+++|+++..+..+.+.+|..++.++.+.+..
T Consensus 160 lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~ 201 (480)
T KOG2563|consen 160 LPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVP 201 (480)
T ss_pred cccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecC
Confidence 233345668999999999999999999999999999998874
No 220
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.44 E-value=2.9e-07 Score=80.43 Aligned_cols=168 Identities=12% Similarity=0.016 Sum_probs=88.1
Q ss_pred HHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHH
Q 036040 106 ASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGF 184 (338)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~ 184 (338)
....+...+.+-....+.|.++++ .|++.++ .+.......+..++..++.|.++||+|.|+-+++..
T Consensus 13 s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~------------iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i 80 (412)
T PF01306_consen 13 SLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTE------------IGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFI 80 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHH------------HHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCCCHHH------------HHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHH
Confidence 333444444455566777888876 7888866 445677778888889999999999999666554443
Q ss_pred HHHHHHHHHH-HhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCc---cchhhhHHHHHHHHHHHHHHH
Q 036040 185 FFMTVFMLAL-AIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPA---RFRSTCHGISAAAGKAGAIIG 260 (338)
Q Consensus 185 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~---~~R~~~~~~~~~~~~~g~~~~ 260 (338)
.+..+..... .+...+.... + ..+...+.....+....+... +.|.+-. +..+.-+|=.-+.+.+|-+++
T Consensus 81 ~~l~~l~~pff~~v~~pll~~-n---~~lg~iig~i~l~~~f~~~~~--~~Ea~~er~sr~~~feYG~~R~wGSig~ai~ 154 (412)
T PF01306_consen 81 AILLLLFGPFFIYVFGPLLQS-N---FWLGAIIGGIYLGLVFNAGVP--LSEAYAERVSRRNGFEYGRARMWGSIGFAIA 154 (412)
T ss_dssp HHHHHTCHHHHHHTHHHHHHT-T----HHHHHHTTTTTTTTTTTHHH--HHHHHHHHHHHHHSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHcccch--HHHHHHHHHHHHhcCCcchHHHHhhHHHHHH
Confidence 2222111111 1111000000 1 111111111111222222111 2343322 233445666778889999999
Q ss_pred HHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040 261 AFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF 305 (338)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (338)
+.+.|.+. ..+....|++..+.+++..++.+
T Consensus 155 s~~~G~L~--------------~i~p~~~fwi~s~~~~il~lll~ 185 (412)
T PF01306_consen 155 SLLAGILF--------------NINPNIIFWIASAAAIILLLLLL 185 (412)
T ss_dssp HHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhheee--------------eeCccHHHHHHHHHHHHHHHHHH
Confidence 99999887 24556777766665555544444
No 221
>PTZ00207 hypothetical protein; Provisional
Probab=98.44 E-value=1.2e-05 Score=74.01 Aligned_cols=191 Identities=16% Similarity=0.032 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHhHhhhhhhccHHHHHHHc-cCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchH---
Q 036040 102 LLGTASTWLLLDVSYFSQNLFQKEIFTAV-GWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRV--- 177 (338)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr--- 177 (338)
+++++...++....-......+..+.+++ |..++.. .+..+.++.++++.+|.+..|++....-+|
T Consensus 355 ~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~----------~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~ 424 (591)
T PTZ00207 355 LWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDA----------LNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAE 424 (591)
T ss_pred HHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCcc----------ceeeehhhhhHHHHhhHHHHHHHHHHHHhhccc
Confidence 56666666666656666677788888888 6633220 011146667778888888888877322222
Q ss_pred -----HHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHH
Q 036040 178 -----TIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAA 252 (338)
Q Consensus 178 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~ 252 (338)
++.+....++.+..+++.+.. + ...+.+..++.+++.+..+++....++|+|. +.-|+-+-+....
T Consensus 425 ~r~prt~~l~~~~~~~~~~lll~~~~-------p-~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a 495 (591)
T PTZ00207 425 DRVPITIALFIPSVCIITMLTLFLTL-------P-KAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLG 495 (591)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHC-------C-ccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHH
Confidence 222222222333333333332 1 1233333344444444555667788999999 6667666666665
Q ss_pred HHHHHHHH-HHHHHHhhhccccCCCCCCCCCCc-chHHHHHHHHHHHHHhHhhee-ecccCCC
Q 036040 253 GKAGAIIG-AFGFLYAAQDQDKSKADPGYPAGI-GIKNTLFLLAAVNVLGLLFTF-LVPEPNG 312 (338)
Q Consensus 253 ~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~e~~~ 312 (338)
.-+|+.+- ..+.+.++|.... +.+....... =++.+|++.+++++++++... ..-++++
T Consensus 496 ~pigs~~~n~~l~G~~Yd~ea~-k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r~ 557 (591)
T PTZ00207 496 SVLSAIFLNRLLYGEWYTQQAD-KLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYRR 557 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-hCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehHH
Confidence 55665554 4556666653321 1111000111 157889999999988888766 3335543
No 222
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.39 E-value=2.3e-05 Score=72.78 Aligned_cols=80 Identities=5% Similarity=-0.005 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhc--hH
Q 036040 101 HLLGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIG--RV 177 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--rr 177 (338)
..+...+...+....+.++.+|+|.|++. +|.++.. ...+...+..-+..+|.+++|+++.|+. -|
T Consensus 393 if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~-----------An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r 461 (735)
T KOG3626|consen 393 IFMLVVLASVIESLAITGYITFLPKYLETQFGISASL-----------ANILTGSIGVPAAAVGIFLGGLIIKKFKLSAR 461 (735)
T ss_pred hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHH-----------HHHHhhhhhhhhhhhhhhccceeeeeecccHH
Confidence 34566667777888899999999999987 5666654 2233444455556678889999999874 44
Q ss_pred HHHHHHHHHHHHHH
Q 036040 178 TIQLIGFFFMTVFM 191 (338)
Q Consensus 178 ~~~~~~~~~~~~~~ 191 (338)
....+.++...+..
T Consensus 462 ~~a~~~~~~~~l~l 475 (735)
T KOG3626|consen 462 GAAKFVIVCSVLSL 475 (735)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444443333333
No 223
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.38 E-value=3.4e-06 Score=74.69 Aligned_cols=173 Identities=15% Similarity=0.067 Sum_probs=91.1
Q ss_pred HHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhc-hHHHHHHHHHH
Q 036040 108 TWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIG-RVTIQLIGFFF 186 (338)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-rr~~~~~~~~~ 186 (338)
.++.+...+.....+.+.++++.|++..+ .+...+...+..+++.+++|.++||.+ +|+.+.+..++
T Consensus 10 ~~f~~f~~~G~~~p~~~~~L~~~G~s~~q------------IG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~ 77 (400)
T PF03825_consen 10 MYFLYFFAYGAFLPYLPLYLESRGFSGTQ------------IGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLL 77 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHH
Confidence 33444444555567789999999988876 344677788888999999999999986 45666555555
Q ss_pred HHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 036040 187 MTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLY 266 (338)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~ 266 (338)
.++.+....... +... ++...+..........|...++..+... .++.-+|-.-..+.+|-+++......
T Consensus 78 ~~~~~~~~~~~~-------~f~~-~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~ 147 (400)
T PF03825_consen 78 SALALLLLAFSS-------SFWW-LFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGG 147 (400)
T ss_pred HHHHHHHHHHhc-------cHHH-HHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHH
Confidence 555443333322 1122 2222222222223333444444444333 23334455555555655555443222
Q ss_pred hhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCC
Q 036040 267 AAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPN 311 (338)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 311 (338)
..... .+..+....+++.++..++.....+.+|+++
T Consensus 148 ~~~~~---------~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~ 183 (400)
T PF03825_consen 148 LLGGY---------LGISGTSLIFYIAAILSLLLAGFALFLPKTP 183 (400)
T ss_pred HHHhh---------hccccccHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 11100 0111223345555555544444445667654
No 224
>PRK11462 putative transporter; Provisional
Probab=98.38 E-value=4.2e-06 Score=75.90 Aligned_cols=177 Identities=14% Similarity=0.089 Sum_probs=101.2
Q ss_pred hHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHh----hchHH-HHHHHHHH
Q 036040 113 DVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDI----IGRVT-IQLIGFFF 186 (338)
Q Consensus 113 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~-~~~~~~~~ 186 (338)
+..+.....|+..++.+ .|+++.. .+.+..+.-+...+.-++.|+++|| +|||+ .++++.+.
T Consensus 22 ~~~~~~~~~~l~~fyt~~~Gl~~~~------------~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~ 89 (460)
T PRK11462 22 HIIFDNVMLYMMFFYTDIFGIPAGF------------VGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALP 89 (460)
T ss_pred hHHHHHHHHHHHHHHHHhhCCCHHH------------HHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHH
Confidence 33344444555555555 5766643 4446666667777888899999996 57754 55556556
Q ss_pred HHHHHHHHHhhhhhcccccchh-hHHHHHHHHHHhhccCccceeeeeecccCC-ccchhhhHHHHHHHHHHHHHHHHHHH
Q 036040 187 MTVFMLALAIPYHHWIQKHNST-GFVVMYALTFFFANFGPNSTTFIVPAEIFP-ARFRSTCHGISAAAGKAGAIIGAFGF 264 (338)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~R~~~~~~~~~~~~~g~~~~~~~~ 264 (338)
.+++..++..... . ...... +..+...+...+.. .......++.+|+.+ ++.|++..++-..++.+|..+++.+.
T Consensus 90 ~~i~~~llf~~p~-~-s~~~~~~y~~~~~~~~~~~~t-~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~ 166 (460)
T PRK11462 90 FGIVCVLAYSTPD-L-SMNGKMIYAAITYTLLTLLYT-VVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLM 166 (460)
T ss_pred HHHHHHHHHhCCC-C-CcchHHHHHHHHHHHHHHHHH-HHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555544432221 1 111112 22222222222222 222334567788876 78999999999999999888887776
Q ss_pred HHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccC
Q 036040 265 LYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEP 310 (338)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~ 310 (338)
..+....... .+..+|.....+++++.+++....+ ..+|.
T Consensus 167 ~plv~~~g~~------~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~ 207 (460)
T PRK11462 167 MPLVNLIGGD------NKPLGFQGGIAVLSVVAFMMLAFCFFTTKER 207 (460)
T ss_pred HHHHHHhCCC------chhhhHHHHHHHHHHHHHHHHHHHHhcceec
Confidence 5544322100 1234677777777777666655544 45554
No 225
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=98.37 E-value=1.3e-05 Score=68.15 Aligned_cols=161 Identities=13% Similarity=0.011 Sum_probs=92.7
Q ss_pred ccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhh
Q 036040 121 LFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHH 200 (338)
Q Consensus 121 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~ 200 (338)
.|.-.+.++.|++..+ -....+...+...+...+.|.++||+|||+..+..+++.+++++.-...
T Consensus 55 pY~Y~LY~~yg~~~~q------------Ia~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~--- 119 (354)
T PF05631_consen 55 PYLYALYESYGFSEHQ------------IAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSS--- 119 (354)
T ss_pred chhHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhcc---
Confidence 3333444666777655 2335566677777788889999999999999888877777776543322
Q ss_pred cccccchhhHHHHHHHHHHhhccCccceeee-eeccc----CCccchhhhHHHHHHH-HHHHHHHHHHHHHHhhhccccC
Q 036040 201 WIQKHNSTGFVVMYALTFFFANFGPNSTTFI-VPAEI----FPARFRSTCHGISAAA-GKAGAIIGAFGFLYAAQDQDKS 274 (338)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~----~p~~~R~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~ 274 (338)
....+++..++.+.......+..-+ ++.|. +|++..+...+...+. +.+.++.+..+.-.+.+.
T Consensus 120 ------~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~---- 189 (354)
T PF05631_consen 120 ------NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADW---- 189 (354)
T ss_pred ------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHH----
Confidence 2444555555555444333322211 23332 4555555555544422 333445555555555421
Q ss_pred CCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCCC
Q 036040 275 KADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNGR 313 (338)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~ 313 (338)
...|...+|....++.+++.+++. .-+|..+.
T Consensus 190 -------~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 190 -------FGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred -------hCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence 233456778777777777777666 55676554
No 226
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.35 E-value=1.4e-05 Score=73.36 Aligned_cols=135 Identities=10% Similarity=0.011 Sum_probs=78.1
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhccccc-chhhHHHHHHHHHHhhccCccceeeeeecccCCccchhh
Q 036040 166 ITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKH-NSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRST 244 (338)
Q Consensus 166 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~ 244 (338)
+.+++.+|.+.+..+.++.++++++.+.+.....+....+ .+..+.+...++.+.+.....|....++.+..|++.||+
T Consensus 339 ~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~ 418 (500)
T PRK09584 339 IYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGF 418 (500)
T ss_pred HHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHH
Confidence 3455555555667788888888888777766543211111 122244444455555555666777788999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhh
Q 036040 245 CHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLF 303 (338)
Q Consensus 245 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (338)
++|+......+|+.++..+...... +.. ..+......++...|...++.+++..++
T Consensus 419 ~~g~~~l~~a~g~~~~g~~~~~~~~--~~~-~~~~~~~~~~~~~~f~~~~~~~~~~a~~ 474 (500)
T PRK09584 419 IMGSWFLTTAGAALIAGYVANLMAV--PDN-VTDPLMSLEVYGRVFLQIGIATAVIAVL 474 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc--ccc-cccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9998876666666666555542210 000 0000001123667777777665544433
No 227
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.34 E-value=1.2e-05 Score=68.00 Aligned_cols=158 Identities=18% Similarity=0.055 Sum_probs=114.2
Q ss_pred HhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 036040 114 VSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLA 193 (338)
Q Consensus 114 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 193 (338)
...-++...++.+-++.|.+.+. ++..+.+..++..+.+++..++..|+|.++.+..++++.+++.++
T Consensus 26 ~~itsvgPLL~~Ir~~~gls~s~------------aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~i 93 (395)
T COG2807 26 PAITSVGPLLDEIRQDLGLSFSV------------AGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILI 93 (395)
T ss_pred hhhhhhhhhHHHHHHHhcccHHH------------HHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45556667777777777777654 566888888888888999999999999999998887777666655
Q ss_pred HHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 036040 194 LAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDK 273 (338)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 273 (338)
=.... ...++......+.+....+......+-+-||++. +..+|++.+.-.+++.+++.+...+..
T Consensus 94 R~~~~---------~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-~~mtglYs~sl~~~aaLaa~lavpla~---- 159 (395)
T COG2807 94 RSLGG---------LPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAVPLAQ---- 159 (395)
T ss_pred Hhccc---------HHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-hhHHhHHHHHHHHHHHHHhhhhhHHHH----
Confidence 44332 2223332233332222223445567788898776 889999999999999999998888873
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040 274 SKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF 305 (338)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (338)
...||+.+..+.+.+++++++..+
T Consensus 160 --------~~~gW~~aL~~WAl~allAl~~Wl 183 (395)
T COG2807 160 --------HSGGWRGALGFWALLALLALLIWL 183 (395)
T ss_pred --------hhccHHHHHHHHHHHHHHHHHHHh
Confidence 335799999988988888877654
No 228
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.20 E-value=1.6e-05 Score=67.57 Aligned_cols=44 Identities=18% Similarity=0.074 Sum_probs=38.4
Q ss_pred cceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 036040 226 NSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQ 269 (338)
Q Consensus 226 ~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~ 269 (338)
.+....++....|.+.||+..|+....+.++-++||.+.+.+..
T Consensus 370 vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 370 VTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred hHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 34455677888999999999999999999999999999988764
No 229
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=1.6e-05 Score=67.98 Aligned_cols=136 Identities=13% Similarity=-0.079 Sum_probs=79.4
Q ss_pred HHHHHHhccchhHHHHHHHHHhhchHHHHH--HHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCcccee
Q 036040 152 QTLVALCGLIPGYWITVILIDIIGRVTIQL--IGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTT 229 (338)
Q Consensus 152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (338)
......+...+++.+.|.+.||++..+.+. .+.+..++++..+.++..+. ..+......++..........|..
T Consensus 311 ~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~----~L~vp~~~l~~~i~~~dasl~P~l 386 (464)
T KOG3764|consen 311 AFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIA----QLWVPNFGLGFGIGLADASLIPTL 386 (464)
T ss_pred eecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHH----HHhhhhHHHHHHHHHHHHHHhhhh
Confidence 455667778889999999999999433332 23222222222222222110 001111111222222222222322
Q ss_pred eeeecccCCcc---chhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040 230 FIVPAEIFPAR---FRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF 305 (338)
Q Consensus 230 ~~~~~e~~p~~---~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (338)
.++.+.-..+ .-|...++......+|..+||.+.+.+. ...|+++...+.++..++......
T Consensus 387 -~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv-------------~~iGF~wl~~iig~~n~iyapvl~ 451 (464)
T KOG3764|consen 387 -GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLV-------------EAIGFEWLMTIIGILNLIYAPVLL 451 (464)
T ss_pred -HHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchhe-------------eehhHHHHHHHHHHHHHHHHHHHH
Confidence 2333333333 5678889999999999999999999997 788999988888888777655544
No 230
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.12 E-value=3.1e-05 Score=68.70 Aligned_cols=180 Identities=20% Similarity=0.120 Sum_probs=110.2
Q ss_pred HhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHh----hchH-HHHHHHHH
Q 036040 112 LDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDI----IGRV-TIQLIGFF 185 (338)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr-~~~~~~~~ 185 (338)
.+..+.....|+..+..+ .|+++.. ++.+..+.=+...+.-++.|.++|| +||+ +.++++.+
T Consensus 24 ~~~~~~~~~~yLl~fYTdv~Gis~~~------------aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~i 91 (467)
T COG2211 24 SNFAFGIVVLYLLFFYTDVFGLSAAL------------AGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAI 91 (467)
T ss_pred HHHHHHHHHHHHHHHHhcccCCcHHH------------HHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhH
Confidence 333444455556665555 4666643 4445666666677788899999996 5654 55555645
Q ss_pred HHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCC-ccchhhhHHHHHHHHHHHHHHHHHHH
Q 036040 186 FMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFP-ARFRSTCHGISAAAGKAGAIIGAFGF 264 (338)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~R~~~~~~~~~~~~~g~~~~~~~~ 264 (338)
..++...++-.... ...........+...+...+.+.. .....++.+|+.+ ++.|.+..+.-..+..+|+.+...+.
T Consensus 92 p~~i~~~l~F~~p~-~~~~~k~~ya~vtY~l~~l~YT~v-niPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~ 169 (467)
T COG2211 92 PFAIVAVLLFITPD-FSMTGKLIYALVTYMLLGLGYTLV-NIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLF 169 (467)
T ss_pred HHHHHHHHHHcCCC-cccCcchHHHHHHHHHHHHHHHhe-eCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554444433331 111112223333333333333333 2334467777764 57899999999999999999999888
Q ss_pred HHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCC
Q 036040 265 LYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPN 311 (338)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~ 311 (338)
+.+....+++ ....||+....+++++.++..++++ -.+|..
T Consensus 170 ~plv~~~g~~------~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~ 211 (467)
T COG2211 170 PPLVKLFGGG------DKALGYQGTALVLGVIGVILLLFCFFNVKERV 211 (467)
T ss_pred HHHHHHhCCC------cchhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 8877654432 1267888888888888887777777 555543
No 231
>PRK09848 glucuronide transporter; Provisional
Probab=98.08 E-value=3.5e-05 Score=69.84 Aligned_cols=67 Identities=19% Similarity=0.162 Sum_probs=42.5
Q ss_pred hHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhh----chHHHH-HHHHHH
Q 036040 113 DVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDII----GRVTIQ-LIGFFF 186 (338)
Q Consensus 113 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~----grr~~~-~~~~~~ 186 (338)
+..+.....|++.|+++ .|+++.+ .+....+..+...+..++.|+++||. |||+.. .++.+.
T Consensus 21 ~~~~~~~~~~l~~y~~~~~gl~~~~------------~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~ 88 (448)
T PRK09848 21 NFAFAMGALFLLSYYTDVAGVGAAA------------AGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAP 88 (448)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHH
Confidence 33343444455556665 4776644 45577777888888999999999996 666644 455444
Q ss_pred HHHHH
Q 036040 187 MTVFM 191 (338)
Q Consensus 187 ~~~~~ 191 (338)
..+..
T Consensus 89 ~~~~~ 93 (448)
T PRK09848 89 LMIFS 93 (448)
T ss_pred HHHHH
Confidence 44333
No 232
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.02 E-value=2.4e-05 Score=51.42 Aligned_cols=66 Identities=12% Similarity=0.071 Sum_probs=51.9
Q ss_pred HHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHH
Q 036040 108 TWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFF 185 (338)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~ 185 (338)
.++...........|.|.++++.|+++.+ .+.+..+..+..+++.+++|.++||+++++..+....
T Consensus 8 ~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~------------iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 8 FYFFYFAALGCLYPFLPLYLKQLGLSPSQ------------IGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 34444455666778899999999999876 4457777888889999999999999999888776543
No 233
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=97.94 E-value=0.00025 Score=53.62 Aligned_cols=142 Identities=10% Similarity=0.065 Sum_probs=88.1
Q ss_pred HhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 036040 112 LDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFM 191 (338)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 191 (338)
....+.........++++.+-.... +.+. ..+.....+......+++++.+.+.+++|.|+.++++.+...+..
T Consensus 8 ~Ftaf~t~~~i~~svi~s~~~~~~~-~i~~-----~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~ 81 (156)
T PF05978_consen 8 LFTAFQTQSFIQESVIHSVHERNPS-SISA-----GLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYI 81 (156)
T ss_pred HHHHHhhhhHHHHHHHHHHhhcCcc-cccc-----cccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3344555555555666554332211 0000 113334455555566677888999999999999999866555443
Q ss_pred HHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 036040 192 LALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAA 268 (338)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~ 268 (338)
....... ...++....+.+++....+...-.++.+...++.|++-.++...+...+.++|..+...+.
T Consensus 82 ~~~~~~~---------~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 82 ASFFYPN---------SYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred HHHHhhh---------HHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332221 3334444444454444455555567888888999999999999998988888887776664
No 234
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=97.88 E-value=0.00043 Score=62.80 Aligned_cols=151 Identities=12% Similarity=0.003 Sum_probs=91.4
Q ss_pred HHHHHHHhccchhHHHHHHHHHhhchHHHHHHH-HHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCcccee
Q 036040 151 AQTLVALCGLIPGYWITVILIDIIGRVTIQLIG-FFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTT 229 (338)
Q Consensus 151 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (338)
....+..+...+..++.|-++|+-|+||.++.. ..++.++..++.+.. ++......++..+...+.. ......
T Consensus 74 ~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~-----~~~~~~~~~l~iia~v~~~-~~~vfy 147 (477)
T PF11700_consen 74 YANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVS-----PGQWWLALVLFIIANVGYE-ASNVFY 147 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhC-----cchHHHHHHHHHHHHHHHH-HHHHHH
Confidence 345556666667788889999998876655544 344444444444432 1122222222222222222 223445
Q ss_pred eeeecccCCccch--------------------------hhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 036040 230 FIVPAEIFPARFR--------------------------STCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAG 283 (338)
Q Consensus 230 ~~~~~e~~p~~~R--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (338)
.+++.|+.+++.+ ++..+.....+++|+++.-.+...+....+.. ..+.
T Consensus 148 na~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~-----~~~~ 222 (477)
T PF11700_consen 148 NAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGST-----ASNT 222 (477)
T ss_pred HHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-----cccc
Confidence 6788999988888 89999999999999988777766554322110 1123
Q ss_pred cchHHHHHHHHHHHHHhHhhee-ecccCCC
Q 036040 284 IGIKNTLFLLAAVNVLGLLFTF-LVPEPNG 312 (338)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~ 312 (338)
...+.++.+.++..++..+-.+ ++||.++
T Consensus 223 ~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~ 252 (477)
T PF11700_consen 223 WAIRVAFLIVALWWLVFSIPLFLWLPDRPG 252 (477)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4567888777777666655555 7887654
No 235
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=97.88 E-value=2.7e-06 Score=78.02 Aligned_cols=157 Identities=11% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhc--hHH
Q 036040 102 LLGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIG--RVT 178 (338)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--rr~ 178 (338)
.+...+..........++..|.|.|++. ++.++.+.+ .....+...+..+|.+++|++..|+. .|.
T Consensus 307 f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~-----------~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~ 375 (539)
T PF03137_consen 307 FMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQAS-----------LLTGIVSIPGAALGILLGGYIVKKFKLSARG 375 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-----------HHHhhhhcchhheehheEEEEEEEecCcHHH
Confidence 3455555666677788899999999987 676665522 22334445566778889999999875 344
Q ss_pred HHHHHHHHHHHHHHHHHhhh--------------hhc-----cc------c-------------------c--chhhHHH
Q 036040 179 IQLIGFFFMTVFMLALAIPY--------------HHW-----IQ------K-------------------H--NSTGFVV 212 (338)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~--------------~~~-----~~------~-------------------~--~~~~~~~ 212 (338)
......+...+..++..... .+. .. . + .....+.
T Consensus 376 ~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl 455 (539)
T PF03137_consen 376 AAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFL 455 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHH
Confidence 44444333333333211100 010 00 0 0 0011111
Q ss_pred HHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHH-HHHHHHHHHHHhhh
Q 036040 213 MYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKA-GAIIGAFGFLYAAQ 269 (338)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~-g~~~~~~~~~~~~~ 269 (338)
+..++..+............+-..+|++.|+.|.|+...+.++ |.+-+|++++.+.|
T Consensus 456 ~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD 513 (539)
T PF03137_consen 456 ILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIID 513 (539)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHh
Confidence 1111222222222223334556778999999999999877666 88889999999985
No 236
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.86 E-value=3.8e-05 Score=68.96 Aligned_cols=156 Identities=10% Similarity=0.052 Sum_probs=87.8
Q ss_pred HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhccc-c--cchhhHHHHHHHHHHhhccCccce
Q 036040 152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQ-K--HNSTGFVVMYALTFFFANFGPNST 228 (338)
Q Consensus 152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~ 228 (338)
...+..++.++|..+.....-+..-|+++.++.++.++..+.-......+.. . ......+.--.+..........|
T Consensus 260 ~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP- 338 (433)
T PF03092_consen 260 LSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMP- 338 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHH-
Confidence 3356666666666666666666676777777655444433322211111100 0 00111111111222222222233
Q ss_pred eeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecc
Q 036040 229 TFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVP 308 (338)
Q Consensus 229 ~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (338)
...+++|+.|+..-|+.+++...+.++|..++..+...+.+..+.+.+ +..+.....++..++.++.+.+..++|
T Consensus 339 ~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~-----~f~~l~~lili~~~~~ll~l~ll~lLp 413 (433)
T PF03092_consen 339 SLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRD-----DFSNLWLLILICSVIQLLPLPLLFLLP 413 (433)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc-----cccchHHHHHHHHHHHHHHHHHHHHcC
Confidence 235689999999999999999999999999999999988865543221 122334445555566656666655777
Q ss_pred cCCCC
Q 036040 309 EPNGR 313 (338)
Q Consensus 309 e~~~~ 313 (338)
+.++.
T Consensus 414 ~~~~~ 418 (433)
T PF03092_consen 414 PQKRI 418 (433)
T ss_pred CCchh
Confidence 75543
No 237
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=97.76 E-value=0.00064 Score=59.02 Aligned_cols=155 Identities=12% Similarity=0.014 Sum_probs=97.2
Q ss_pred ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchh
Q 036040 130 VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILID-IIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNST 208 (338)
Q Consensus 130 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (338)
+|++..+ +...+.....+.++|....|++.. |.+++++..+++.++.++..++...... ...
T Consensus 239 fgmsv~e------------TT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~-----~~~ 301 (403)
T PF03209_consen 239 FGMSVGE------------TTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPL-----GSP 301 (403)
T ss_pred cCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhc-----ccc
Confidence 5777655 444777888888888888888877 6778888888888888777766654421 112
Q ss_pred hHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHH
Q 036040 209 GFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKN 288 (338)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (338)
..+....+..+++.+......-+...++.+++..|..+|.-.....+...++..+.+.+.|.......+ ....+|..
T Consensus 302 ~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~---~~~~aY~~ 378 (403)
T PF03209_consen 302 WLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGN---SPALAYGV 378 (403)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---CcchHHHH
Confidence 222222222222222222222344567777788899999999888888888888888877532111000 13456777
Q ss_pred HHHHHHHHHHHhHhhe
Q 036040 289 TLFLLAAVNVLGLLFT 304 (338)
Q Consensus 289 ~~~~~~~~~~~~~~~~ 304 (338)
+|.+-++..+++..+.
T Consensus 379 VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 379 VFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777666666555543
No 238
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.74 E-value=0.00011 Score=66.14 Aligned_cols=129 Identities=19% Similarity=0.193 Sum_probs=78.8
Q ss_pred hHHHHHHHHHhh-----chHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccC
Q 036040 163 GYWITVILIDII-----GRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIF 237 (338)
Q Consensus 163 ~~~~~g~l~d~~-----grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 237 (338)
..++.|.++|-+ .||+.++++.+++.++.+.++...... .+.....+..++..++........-++..|..
T Consensus 40 ~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~----~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~ 115 (433)
T PF03092_consen 40 IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASE----SSAAIAVVLLFLASFGYAFADVAADALVVELA 115 (433)
T ss_pred HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccccc----chhhhHHHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence 466789999975 466666667666655555444433211 11112222222222222222334445566665
Q ss_pred ---CccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-eccc
Q 036040 238 ---PARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPE 309 (338)
Q Consensus 238 ---p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e 309 (338)
|.+ |+.-.+.......+|++++..+.+.+. +..+++..|.+.+.+..+..+..+ +.+|
T Consensus 116 ~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~-------------~~~~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 116 RREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLL-------------DSFGPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred hcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhh-------------hcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 444 888888888899999999999999887 566777777777777666665555 5555
No 239
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=97.70 E-value=0.00014 Score=63.04 Aligned_cols=107 Identities=13% Similarity=-0.033 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHhhc-----hHHHHHHH-HHHHHHHHHHHHhhhhhccc-----ccchhhH---HHHHHHHHHhhccCccc
Q 036040 162 PGYWITVILIDIIG-----RVTIQLIG-FFFMTVFMLALAIPYHHWIQ-----KHNSTGF---VVMYALTFFFANFGPNS 227 (338)
Q Consensus 162 ~~~~~~g~l~d~~g-----rr~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~ 227 (338)
+..+..|+.+|+.+ ||..+++. ...++.+..+..+....... ..+.+.. ....+...+.+......
T Consensus 29 p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T 108 (403)
T PF03209_consen 29 PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASGT 108 (403)
T ss_pred HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhHH
Confidence 36788999999988 77666554 44444433433333322211 1112221 11222223333333345
Q ss_pred eeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 036040 228 TTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAA 268 (338)
Q Consensus 228 ~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~ 268 (338)
...++++|..|++.|+++.++....--+|.+++..+.+.+.
T Consensus 109 ~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL 149 (403)
T PF03209_consen 109 SFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLL 149 (403)
T ss_pred HHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56678999999999999999999999999999999999988
No 240
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=97.62 E-value=9.9e-06 Score=74.37 Aligned_cols=178 Identities=14% Similarity=0.023 Sum_probs=1.7
Q ss_pred hccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhh
Q 036040 120 NLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYH 199 (338)
Q Consensus 120 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~ 199 (338)
..-.+++-++++++..+. +++.+..-++.++..++..++.+|..|-+.+-++.++++++.+++++++.
T Consensus 23 ~~~lttiErRF~l~S~~~------------G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf 90 (539)
T PF03137_consen 23 NSSLTTIERRFGLSSSQS------------GLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHF 90 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhcCCCHHHH------------HHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHh
Confidence 334556666788888774 34788888888888888899999888888888899999999888887653
Q ss_pred hccc------c--------------------------------c-c---hhhHHHHHHHHHHhhccCccceeeeeecccC
Q 036040 200 HWIQ------K--------------------------------H-N---STGFVVMYALTFFFANFGPNSTTFIVPAEIF 237 (338)
Q Consensus 200 ~~~~------~--------------------------------~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 237 (338)
.... . . . ...++++..++.+.+....++.-.+|+-|..
T Consensus 91 ~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv 170 (539)
T PF03137_consen 91 LSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNV 170 (539)
T ss_dssp -------------------------------------------------------------SSS----------------
T ss_pred hcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccc
Confidence 1100 0 0 0 1122333334555555566778888999999
Q ss_pred CccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcc-ccCC-------CCCCCCCCcc-hHHHHHHHHHHHHHhHhheeecc
Q 036040 238 PARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQ-DKSK-------ADPGYPAGIG-IKNTLFLLAAVNVLGLLFTFLVP 308 (338)
Q Consensus 238 p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 308 (338)
+++.-+...|+.+....+|-.+|-.+.+...... |... ..|.-+...| |...|++.+++.++..+..++.|
T Consensus 171 ~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FP 250 (539)
T PF03137_consen 171 SKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFP 250 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999899999998888888888777777665432 1111 1122222233 66777777777777666666544
Q ss_pred c
Q 036040 309 E 309 (338)
Q Consensus 309 e 309 (338)
+
T Consensus 251 k 251 (539)
T PF03137_consen 251 K 251 (539)
T ss_dssp -
T ss_pred c
Confidence 4
No 241
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=97.58 E-value=0.0021 Score=57.19 Aligned_cols=139 Identities=12% Similarity=0.079 Sum_probs=87.5
Q ss_pred HhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 036040 114 VSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLA 193 (338)
Q Consensus 114 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 193 (338)
+..-++...+..|+.+.|+++.. -+..-....+.++.|.++..++.+|+|..+.-.++......+..+
T Consensus 272 ~TVLsf~~lmt~yl~~~G~s~~~------------igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~ 339 (432)
T PF06963_consen 272 FTVLSFGGLMTAYLKSQGYSPSV------------IGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLAL 339 (432)
T ss_pred HHHhcCcHHHHHHHHHCCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Confidence 33445566677888887888755 233556677778889999999999999888877776665555444
Q ss_pred HHhhhhhccccc---chhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 036040 194 LAIPYHHWIQKH---NSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFL 265 (338)
Q Consensus 194 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~ 265 (338)
..... +..... .....++...+..-.+.-+..-...-+++|..|++.|++..|.-+...++...+.-.+.-
T Consensus 340 ~v~~~-~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~i 413 (432)
T PF06963_consen 340 CVVSF-WAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTI 413 (432)
T ss_pred HHHHH-hcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 43332 111111 112222222222222233333344567899999999999999999988887776554443
No 242
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=97.57 E-value=0.00083 Score=60.47 Aligned_cols=105 Identities=9% Similarity=0.002 Sum_probs=74.5
Q ss_pred HhccchhHHHHH-HHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecc
Q 036040 157 LCGLIPGYWITV-ILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAE 235 (338)
Q Consensus 157 ~~~~~~~~~~~g-~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 235 (338)
.....++.++.. .+...+|-|++...|+....+.....++.... + ......+ .........+...+..+-
T Consensus 287 ~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~-------w-~~~~~~v-~~~~~~~~~pa~~s~~s~ 357 (463)
T KOG2816|consen 287 SILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATET-------W-MMFAAGV-VVALAGIVFPAIRAFASI 357 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccc-------h-hhhHHHH-HHHhhcchhHHHHhHHHh
Confidence 333344444444 77888898888888888888888888776631 1 2222222 222334445667778888
Q ss_pred cCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 036040 236 IFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQD 270 (338)
Q Consensus 236 ~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 270 (338)
+..++.+|++.++...+..+.++++|.+.+.+...
T Consensus 358 ~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 358 LVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred hcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999888643
No 243
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=97.41 E-value=0.003 Score=53.39 Aligned_cols=130 Identities=19% Similarity=0.191 Sum_probs=80.5
Q ss_pred HHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceee
Q 036040 151 AQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTF 230 (338)
Q Consensus 151 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (338)
.......+...++.++.|.+.||+|||+.+..+.....+..++..+... .............+.......+...
T Consensus 43 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~ 116 (338)
T COG0477 43 LLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN------VGLALLLILRLLQGLGGGGLLPVAS 116 (338)
T ss_pred HHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3455556666666689999999999998777776543333233332221 1123333333333333444556677
Q ss_pred eeecccCCc-cchhhhHHHHHH-HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHH
Q 036040 231 IVPAEIFPA-RFRSTCHGISAA-AGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVN 297 (338)
Q Consensus 231 ~~~~e~~p~-~~R~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (338)
++..|.+|. +.|+...+.... ...++..+++.+.+.+... ...+|+..+.......
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 117 ALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-----------LLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhcchHHHHHHHHHHH
Confidence 888999988 678888888877 5677888888777766531 2356777665555444
No 244
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.38 E-value=0.0038 Score=58.56 Aligned_cols=200 Identities=12% Similarity=-0.033 Sum_probs=125.9
Q ss_pred HHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHH
Q 036040 103 LGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLI 182 (338)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~ 182 (338)
.+..+..+.+.+..--+..-..++=++++++..+.+. +....-++..+...+..+..-|.-|-+++-+
T Consensus 100 ~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~------------I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~ 167 (735)
T KOG3626|consen 100 VLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGL------------IASSYDIGNLLLIIFVSYFGSRGHRPRWIGI 167 (735)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCccee------------EeeecccchhhhhHhHHHhccccCccceeee
Confidence 3333333443333322333445555567888777443 5555666666667777888888888889999
Q ss_pred HHHHHHHHHHHHHhhhhhcc--------------cc---------------------------cc---hhhHHHHHHHHH
Q 036040 183 GFFFMTVFMLALAIPYHHWI--------------QK---------------------------HN---STGFVVMYALTF 218 (338)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~--------------~~---------------------------~~---~~~~~~~~~~~~ 218 (338)
++++++++.++.+++..... .. .. .+.++++..++.
T Consensus 168 G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~ 247 (735)
T KOG3626|consen 168 GLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLL 247 (735)
T ss_pred chhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHh
Confidence 99999999998887742100 00 00 112333333445
Q ss_pred HhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccC-CC----CCCCCCCcc-hHHHHHH
Q 036040 219 FFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKS-KA----DPGYPAGIG-IKNTLFL 292 (338)
Q Consensus 219 ~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~-~~~~~~~ 292 (338)
+.+....++.-.+|+-|..-++.-..-.|+.++...+|-++|-++.+.+.....+. .. +|.-+...| |...|++
T Consensus 248 GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi 327 (735)
T KOG3626|consen 248 GIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLI 327 (735)
T ss_pred hcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHH
Confidence 55555566777788999988888888889998888888888888777776543222 11 121112223 6777888
Q ss_pred HHHHHHHhHhheeecccCCCCC
Q 036040 293 LAAVNVLGLLFTFLVPEPNGRS 314 (338)
Q Consensus 293 ~~~~~~~~~~~~~~~~e~~~~~ 314 (338)
.+.+.++..+..++.|.+..++
T Consensus 328 ~g~~~~~~a~p~f~fPk~lp~~ 349 (735)
T KOG3626|consen 328 CGALLLFSAVPLFFFPKELPKS 349 (735)
T ss_pred HHHHHHHHHHHHHhCcccCccc
Confidence 8888888888777777655443
No 245
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=97.22 E-value=0.0017 Score=43.21 Aligned_cols=74 Identities=12% Similarity=0.073 Sum_probs=62.5
Q ss_pred hHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 036040 113 DVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFML 192 (338)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 192 (338)
.++-+..+..+|.+.++.+++.++ +.++.+..+++.++|.+...++.++.++++.+..+.+.+.+...
T Consensus 5 GigRFayTplLP~M~~~~~ls~~~------------ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~ 72 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQADGGLSLSQ------------AGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTA 72 (85)
T ss_pred hhHHHHHHhHhHHHHHhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 345667788899999998888866 67789999999999999999999998888999999888888888
Q ss_pred HHHhhh
Q 036040 193 ALAIPY 198 (338)
Q Consensus 193 ~~~~~~ 198 (338)
.+++..
T Consensus 73 ~ma~~~ 78 (85)
T PF06779_consen 73 AMALTH 78 (85)
T ss_pred HHHHHh
Confidence 777665
No 246
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.21 E-value=0.013 Score=53.42 Aligned_cols=116 Identities=9% Similarity=-0.042 Sum_probs=70.1
Q ss_pred HHHHHHhccchhHHHHHHHHHhhch--H-----HHHHHHHHHHHHHHHHHHhhhhhcccc-cchhhHHHHHHHHHHhhcc
Q 036040 152 QTLVALCGLIPGYWITVILIDIIGR--V-----TIQLIGFFFMTVFMLALAIPYHHWIQK-HNSTGFVVMYALTFFFANF 223 (338)
Q Consensus 152 ~~~~~~~~~~~~~~~~g~l~d~~gr--r-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 223 (338)
..++..+..++.+++.+++=.|.+| | .-+.+++++++++.+++.+.......+ ..+..+++...++...+-.
T Consensus 313 ~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl 392 (493)
T PRK15462 313 FQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAEL 392 (493)
T ss_pred HHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHH
Confidence 3444445445555555666555532 2 135677777777777666544322221 1334444445555555566
Q ss_pred CccceeeeeecccCCccchhhhHHHHHHHH-HHHHHHHHHHHHHh
Q 036040 224 GPNSTTFIVPAEIFPARFRSTCHGISAAAG-KAGAIIGAFGFLYA 267 (338)
Q Consensus 224 ~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~-~~g~~~~~~~~~~~ 267 (338)
...|+..++++++.|++.||..+|...... .+|..++..+....
T Consensus 393 ~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 393 FIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred HHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667888889999999999999999986533 45555555554443
No 247
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=97.13 E-value=0.014 Score=47.57 Aligned_cols=104 Identities=12% Similarity=0.109 Sum_probs=51.6
Q ss_pred HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccc--hhhHHHHHHHHHHhhccCcccee
Q 036040 152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHN--STGFVVMYALTFFFANFGPNSTT 229 (338)
Q Consensus 152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 229 (338)
..++...+.++|.+..|.....-=+|+.++...+.+.+.+.+++....+....++ ....+.++.++.+.+.-|.+++.
T Consensus 146 ~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~Vi 225 (267)
T PF07672_consen 146 FQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQGVI 225 (267)
T ss_pred HHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4444555555666666766664444444444444444433333333222222222 34445556666777777777776
Q ss_pred eeeecccC--CccchhhhHHHHHHHHHH
Q 036040 230 FIVPAEIF--PARFRSTCHGISAAAGKA 255 (338)
Q Consensus 230 ~~~~~e~~--p~~~R~~~~~~~~~~~~~ 255 (338)
-....|.= .++.-|...|+.-.++.+
T Consensus 226 L~lPhEyK~~~pk~ig~~Fg~iWGfGY~ 253 (267)
T PF07672_consen 226 LNLPHEYKGYNPKKIGIQFGLIWGFGYI 253 (267)
T ss_pred hcChhhhcCCCcceehhHHHHHHHHHHH
Confidence 55555542 233335555554444433
No 248
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=97.12 E-value=0.011 Score=53.45 Aligned_cols=106 Identities=8% Similarity=-0.081 Sum_probs=70.1
Q ss_pred hHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhccccc-------------c--h--------hhHHHHHHHHHH
Q 036040 163 GYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKH-------------N--S--------TGFVVMYALTFF 219 (338)
Q Consensus 163 ~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~--~--------~~~~~~~~~~~~ 219 (338)
..++.+++++|++|++++-+..........++++......+.- . . .+...++.+..-
T Consensus 60 ~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~e 139 (472)
T TIGR00769 60 FMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAE 139 (472)
T ss_pred HHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHH
Confidence 3667899999999999988776666666666655532111100 0 0 011111111111
Q ss_pred hhccCccc-eeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 036040 220 FANFGPNS-TTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAA 268 (338)
Q Consensus 220 ~~~~~~~~-~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~ 268 (338)
..+....+ ..|.+.+|++..++-.+-.++....+++|.++++.+...+.
T Consensus 140 lw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 140 LWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222233 67889999999999999999999999999999998888775
No 249
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=97.09 E-value=0.016 Score=50.95 Aligned_cols=126 Identities=13% Similarity=0.127 Sum_probs=78.8
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhh
Q 036040 165 WITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRST 244 (338)
Q Consensus 165 ~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~ 244 (338)
+....+.|..|-|++++.+.+...+...++.+... ...+-+.-++.+... +.....++|+=-..|++.--+
T Consensus 59 ~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~s--------v~~mq~~q~~yg~~~-a~evay~sYiys~v~~~~yq~ 129 (412)
T PF01770_consen 59 LPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTS--------VLAMQLMQFFYGLAT-AAEVAYYSYIYSVVDKEHYQK 129 (412)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCc--------HHHHHHHHHHHHHHH-HHHHHHHHHheeecCHHHHHH
Confidence 36678999999999999987776666666655442 222333323222222 222334445555567777677
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccC
Q 036040 245 CHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEP 310 (338)
Q Consensus 245 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 310 (338)
+.+......-+|.+++..+...+... ...++.....+......+++++.+++|..
T Consensus 130 vts~~raa~l~g~~~s~~lgQllvs~-----------~~~sy~~L~~isl~~~~~a~~~~~fLP~~ 184 (412)
T PF01770_consen 130 VTSYTRAATLVGRFISSLLGQLLVSF-----------GGVSYFQLNYISLASVSLALLIALFLPMP 184 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-----------cCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 78888887778888888887777631 34556666666555566666666667654
No 250
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.043 Score=49.19 Aligned_cols=109 Identities=16% Similarity=0.044 Sum_probs=76.3
Q ss_pred HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeee
Q 036040 152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFI 231 (338)
Q Consensus 152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (338)
..++.+....+++++++.+.|+.|.|+.+.++........+.+.+.. .+...+.-.+ .+++....+..--.
T Consensus 55 ~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N--------~y~~yfssal-lG~Gaallw~GqG~ 125 (461)
T KOG3098|consen 55 GQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN--------SYYLYFSSAL-LGFGAALLWTGQGG 125 (461)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc--------hHHHHHHHHH-hhhhHHheecccce
Confidence 35556666667888999999999999999998666555554444333 2222333333 33333333444557
Q ss_pred eecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 036040 232 VPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQ 269 (338)
Q Consensus 232 ~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~ 269 (338)
|++|..+.+.+.+..++...+...+.++|..+...+..
T Consensus 126 ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~ 163 (461)
T KOG3098|consen 126 YLTSNSTRETIERNISIFWAIGQSSLIIGGIILFIYFQ 163 (461)
T ss_pred ehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeE
Confidence 89999999999999999999999999998877666654
No 251
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=96.88 E-value=0.0083 Score=52.67 Aligned_cols=61 Identities=15% Similarity=0.048 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 036040 208 TGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAA 268 (338)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~ 268 (338)
.+.+++.++..+..++..+...+..+.|-.|++.|..++|.......+|..++..+.-.+.
T Consensus 335 i~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 335 IWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4444455555555555556666667788889999999999999988888888877766553
No 252
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=96.79 E-value=0.0046 Score=54.57 Aligned_cols=115 Identities=11% Similarity=-0.006 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccc-ccchhhHHHHHHHHHHhhccCccceeeeeecccCCcc---chhhhHHHHHHHH
Q 036040 178 TIQLIGFFFMTVFMLALAIPYHHWIQ-KHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR---FRSTCHGISAAAG 253 (338)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~R~~~~~~~~~~~ 253 (338)
+++.++.++..++.+++.+....... .......+.+...+...+.++.-+...++.+|.++++ .|.+...+.+...
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 45667777777777775544422111 1111233333344455566677778888899999765 5677888889999
Q ss_pred HHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040 254 KAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF 305 (338)
Q Consensus 254 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (338)
++|+.++..+.+++. ++.||...|.+.++..+++.+..+
T Consensus 82 n~G~~~~~~~~~~i~-------------~~~~~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQ-------------QNYGWFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp HHHHHHHHHCCCHHH-------------HCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhcccchhhc-------------cccchhhhhhHHHHHHHHHHHHHH
Confidence 999999999999997 688999999988888777766554
No 253
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=96.69 E-value=0.0021 Score=55.16 Aligned_cols=101 Identities=9% Similarity=-0.056 Sum_probs=63.9
Q ss_pred HHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCC-CCC--CCCcchH
Q 036040 211 VVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKAD-PGY--PAGIGIK 287 (338)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~ 287 (338)
+++..++.+.+.....+....+++++.|++.+++.+++...+..+|.+++|.+.+.+......+... .+. ....+|+
T Consensus 13 ~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~ 92 (310)
T TIGR01272 13 FLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVH 92 (310)
T ss_pred HHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHH
Confidence 3333444444445556777888999999999999999999999999999999999887311000000 000 0114688
Q ss_pred HHHHHHHHHHHHhHhhee--ecccCC
Q 036040 288 NTLFLLAAVNVLGLLFTF--LVPEPN 311 (338)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~--~~~e~~ 311 (338)
.++++.+++.++..+... -+||.+
T Consensus 93 ~~yl~ia~~~~~~~i~~~~~~~p~~~ 118 (310)
T TIGR01272 93 TPYLLLAGALAVLAIIFAFLPLPELQ 118 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCCC
Confidence 888866655444444333 446643
No 254
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.019 Score=51.33 Aligned_cols=118 Identities=14% Similarity=0.136 Sum_probs=75.0
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHh---hchHHHHHHHHHHHHHHHHHHHhhhhhcc---cc-------cchhhHHHHHH
Q 036040 149 ARAQTLVALCGLIPGYWITVILIDI---IGRVTIQLIGFFFMTVFMLALAIPYHHWI---QK-------HNSTGFVVMYA 215 (338)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~g~l~d~---~grr~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------~~~~~~~~~~~ 215 (338)
........+++.++++...+.+.+| +||++++.++..+..+..++.-.....-. .. ........+..
T Consensus 281 ~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~ 360 (461)
T KOG3098|consen 281 IAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIG 360 (461)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHH
Confidence 4445666677777777788888765 68888888887776666555544332111 00 01123334444
Q ss_pred HHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 036040 216 LTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYA 267 (338)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~ 267 (338)
...++.-.......+.+++..+ ++.|..+.++.-+...+++.++-+..+..
T Consensus 361 ~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 361 FLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL 411 (461)
T ss_pred HHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4455555555666777888888 56788888888887777777766666654
No 255
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=96.54 E-value=0.035 Score=48.90 Aligned_cols=71 Identities=10% Similarity=-0.042 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHH
Q 036040 102 LLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQL 181 (338)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~ 181 (338)
++.-.+-|.....+++-+..|...+-++..-++..... .+..-+...+.+.++++..|++..++.+..-+.
T Consensus 249 ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vY---------NG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~ 319 (412)
T PF01770_consen 249 LLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVY---------NGAVEAASTLLGAIAALLAGYVKVNWDRWGELA 319 (412)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCccc---------chHHHHHHHHHHHHHHHHHhHhhcchHHHHHHH
Confidence 33344444555566666667777666665112222111 223444444555557777888866665544333
No 256
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=96.52 E-value=0.048 Score=49.09 Aligned_cols=53 Identities=17% Similarity=0.067 Sum_probs=35.7
Q ss_pred HHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 036040 215 ALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYA 267 (338)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~ 267 (338)
.++.+...+-..+..+.+..+..+++.|..+..+...+-.+|-.+|..+.-.+
T Consensus 379 ~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~ 431 (437)
T TIGR00939 379 MLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF 431 (437)
T ss_pred HHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334333333455666778888889998888888887777877777664433
No 257
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=96.38 E-value=0.0056 Score=53.86 Aligned_cols=155 Identities=11% Similarity=0.040 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHh----hch
Q 036040 101 HLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDI----IGR 176 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~gr 176 (338)
.++.+..+.+...+++-.-..|.|.+++++|......++ .-...-+.+++..++.|..+|| +||
T Consensus 33 ~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~------------iw~~gPi~G~~vQP~vG~~SDrc~sr~GR 100 (498)
T KOG0637|consen 33 KLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSI------------IWLCGPLSGLLVQPLVGSASDRCTSRYGR 100 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccc------------cccccccccceeccccccccccccccccc
Confidence 445556666666666777778889999999988876332 3344455566678888999996 788
Q ss_pred HHHHHHHH-HHHHHHHHHHHhhhhhc--ccccc-h---hhHHHHHH---HHHHhhccCccceeeeeecccCCccchhh-h
Q 036040 177 VTIQLIGF-FFMTVFMLALAIPYHHW--IQKHN-S---TGFVVMYA---LTFFFANFGPNSTTFIVPAEIFPARFRST-C 245 (338)
Q Consensus 177 r~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~-~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~~p~~~R~~-~ 245 (338)
|+.++... +...+.++++.+..... ..++. . ...+.... .+.=+........+-+++.++.....+.+ +
T Consensus 101 RRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~A 180 (498)
T KOG0637|consen 101 RRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRA 180 (498)
T ss_pred ccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhcc
Confidence 87766554 34444555555443211 11111 1 11121111 12223333445567788999987776666 8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 036040 246 HGISAAAGKAGAIIGAFGFLYA 267 (338)
Q Consensus 246 ~~~~~~~~~~g~~~~~~~~~~~ 267 (338)
.+....+..+|+.+|-.+.++.
T Consensus 181 ns~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 181 NSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred chhHHHHHHhcceeeeeccccc
Confidence 8888888888888777666544
No 258
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=96.29 E-value=0.058 Score=47.29 Aligned_cols=155 Identities=12% Similarity=-0.094 Sum_probs=83.6
Q ss_pred HHHHHHhccchhHHHHHHHHHhhchHHHHHH-HHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceee
Q 036040 152 QTLVALCGLIPGYWITVILIDIIGRVTIQLI-GFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTF 230 (338)
Q Consensus 152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (338)
..++..+...+-+++-|.++|+.|+|+..+. ...+..++..++.+... .+.+...+++..+......+......
T Consensus 63 ~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~-----~s~~~~~l~~~il~~i~~~~s~Vfyd 137 (438)
T COG2270 63 ASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPP-----GSYLLLLLLFLILASIGFEFSNVFYD 137 (438)
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCC-----CchHHHHHHHHHHHHHhcchhheehh
Confidence 3344444445566778999999996665544 44444444444444431 12333333333333333333344556
Q ss_pred eeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCC-----CCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040 231 IVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKA-----DPGYPAGIGIKNTLFLLAAVNVLGLLFTF 305 (338)
Q Consensus 231 ~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (338)
+++.++.+++.-++..++....+.+|+.+.-.+........+.+.. +....+....+.++.+.++-.++..+-.+
T Consensus 138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~ 217 (438)
T COG2270 138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMI 217 (438)
T ss_pred hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHH
Confidence 7788888888878888888888888877655554222211110000 00111344567777777666655555444
Q ss_pred -ecccCC
Q 036040 306 -LVPEPN 311 (338)
Q Consensus 306 -~~~e~~ 311 (338)
..++..
T Consensus 218 ~~v~~~~ 224 (438)
T COG2270 218 LNVHDAE 224 (438)
T ss_pred hcccccc
Confidence 555543
No 259
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=96.23 E-value=0.032 Score=48.15 Aligned_cols=84 Identities=14% Similarity=0.093 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHH-----hhc
Q 036040 101 HLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILID-----IIG 175 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~g 175 (338)
.+..+.+.+..+.+-+... .-.|.+++.-|.|-++.+. ..... --..--+++..+.| |+|
T Consensus 32 ~illLl~LYllQGiP~GL~-~~iP~lL~ak~vSyt~~a~------------fS~ay--~P~sLKllWaPiVDs~y~k~~G 96 (510)
T KOG3574|consen 32 SILLLLFLYLLQGIPLGLI-GAIPLLLQAKGVSYTSQAI------------FSFAY--WPFSLKLLWAPIVDSVYSKRFG 96 (510)
T ss_pred hHHHHHHHHHHcCCchhHh-hhhHHHhcCCCcchhhhhh------------hhhhh--hHHHHHHHHHhhhHHHHHHhhc
Confidence 4455556666666555444 4788888865554443111 11100 01112447888888 999
Q ss_pred hHHHHHH-HHHHHHHHHHHHHhhhh
Q 036040 176 RVTIQLI-GFFFMTVFMLALAIPYH 199 (338)
Q Consensus 176 rr~~~~~-~~~~~~~~~~~~~~~~~ 199 (338)
||+..++ +..+.+..+..++....
T Consensus 97 rrksWvvp~q~llG~~mllLs~~v~ 121 (510)
T KOG3574|consen 97 RRKSWVVPCQYLLGLFMLLLSYLVD 121 (510)
T ss_pred cccceeeehHHHHHHHHHHHhhCCC
Confidence 9886655 34444555666655443
No 260
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=96.22 E-value=0.0028 Score=52.30 Aligned_cols=113 Identities=12% Similarity=-0.005 Sum_probs=70.0
Q ss_pred HHHHHHhccchhHHHHHHHHHh-hchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceee
Q 036040 152 QTLVALCGLIPGYWITVILIDI-IGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTF 230 (338)
Q Consensus 152 ~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (338)
+.++...-.++-++++|++.|| +|-|...++-+.+..++-++++.-.. .+..+.+....++++.++-.....-.
T Consensus 84 lYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi-----~~aFw~M~~GRF~FGIGgESlAVaQN 158 (459)
T KOG4686|consen 84 LYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGI-----SHAFWTMLAGRFLFGIGGESLAVAQN 158 (459)
T ss_pred eeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchH-----HHHHHHHHhhheeeccCchhhhhhhc
Confidence 4555666677778899999997 57666555444444444443332211 02233444444444443333333445
Q ss_pred eeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 036040 231 IVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQ 269 (338)
Q Consensus 231 ~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~ 269 (338)
.+..-+|-.+.-+.++|+.....++|+.+--.+.+++.+
T Consensus 159 ~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~ 197 (459)
T KOG4686|consen 159 KYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYD 197 (459)
T ss_pred ceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHH
Confidence 667777887888999999999999998877777776654
No 261
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=96.07 E-value=0.0059 Score=54.78 Aligned_cols=61 Identities=13% Similarity=0.117 Sum_probs=45.4
Q ss_pred eeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHh
Q 036040 229 TFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLL 302 (338)
Q Consensus 229 ~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (338)
..+.-+|+..++.++++.|+....+..+..++|.+..... ...|.++...+.++..++...
T Consensus 409 ~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~-------------~~~g~~~v~~~~~~~~l~~~~ 469 (488)
T KOG2325|consen 409 LDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIF-------------TLSGPRPVWIILLCLLLVVAA 469 (488)
T ss_pred HHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhH-------------HhcCccHHHHHHHHHHHHHHH
Confidence 4456688899999999999999999999999998888776 456766666555544444333
No 262
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=96.05 E-value=0.33 Score=45.30 Aligned_cols=178 Identities=13% Similarity=0.048 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHh-hchHH
Q 036040 101 HLLGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDI-IGRVT 178 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~ 178 (338)
....+...-.+....+++....+-.|+.. ++..... +.-.............+++++++|- +||-+
T Consensus 38 s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~------------aa~~v~~f~G~~~~~~l~g~~laD~f~gry~ 105 (571)
T KOG1237|consen 38 SAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGG------------AANNVNAFGGTQFLLPLLGAFLADSFLGRYF 105 (571)
T ss_pred hHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHH------------HHHHHHHHhhHHHHHHHHHHHHHHHHhHHHH
Confidence 33444444445556666664444444433 4443322 1222333333444566789999997 58989
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcc----------c----ccchh---hHHHHHHHHHHhhccCccceeeeeecccCCc--
Q 036040 179 IQLIGFFFMTVFMLALAIPYHHWI----------Q----KHNST---GFVVMYALTFFFANFGPNSTTFIVPAEIFPA-- 239 (338)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~----------~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-- 239 (338)
++.++.++..+++.++........ . ..... ..+.........+.++.-+...++-+|.++.
T Consensus 106 tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~ 185 (571)
T KOG1237|consen 106 TINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELD 185 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccC
Confidence 998888888777665554332110 0 00111 1222222233335566667777788888872
Q ss_pred --cc--hhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhh
Q 036040 240 --RF--RSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLF 303 (338)
Q Consensus 240 --~~--R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (338)
+. +...+.+.++..++|..++..+..+.. ++.+|...|-+..++.++++++
T Consensus 186 ~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq-------------~~~~w~lgf~i~~~~~~lai~i 240 (571)
T KOG1237|consen 186 PVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQ-------------DNVGWKLGFGIPTVLNALAILI 240 (571)
T ss_pred cchhhCcccchhHHHHHHHHHHHHHHHHHHhhh-------------hcccceeeccHHHHHHHHHHHH
Confidence 22 235667777777888888888888885 5677777776666555554443
No 263
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=95.95 E-value=0.3 Score=43.78 Aligned_cols=141 Identities=10% Similarity=-0.029 Sum_probs=76.0
Q ss_pred HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHh----hhhhccccc-chhhHHHHHH--HHHH-hhcc
Q 036040 152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAI----PYHHWIQKH-NSTGFVVMYA--LTFF-FANF 223 (338)
Q Consensus 152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~--~~~~-~~~~ 223 (338)
......+..++.+...|...||..|.+....+.++.-++..+... ......... +......++. ...+ ....
T Consensus 43 ygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~L 122 (432)
T PF06963_consen 43 YGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERL 122 (432)
T ss_pred HHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHH
Confidence 445555666667777899999999988877665544333322221 111111110 0111111111 1111 1111
Q ss_pred Cccceeeeeeccc----C--CccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHH
Q 036040 224 GPNSTTFIVPAEI----F--PARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVN 297 (338)
Q Consensus 224 ~~~~~~~~~~~e~----~--p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (338)
+......+.--|+ . ++.......+...-+-....+++|++.+.+. +..+...+..+.++..
T Consensus 123 as~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~-------------t~~s~~~~~~~i~~~N 189 (432)
T PF06963_consen 123 ASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLM-------------TFASPVIAAIFIAGWN 189 (432)
T ss_pred HHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------hccCHHHHHHHHHHHH
Confidence 1111111112222 2 3444556666666666779999999999997 5678888888888887
Q ss_pred HHhHhhee
Q 036040 298 VLGLLFTF 305 (338)
Q Consensus 298 ~~~~~~~~ 305 (338)
++++..=+
T Consensus 190 ~~S~~vEy 197 (432)
T PF06963_consen 190 LASVFVEY 197 (432)
T ss_pred HHHHHHHH
Confidence 77766544
No 264
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=95.75 E-value=0.07 Score=47.82 Aligned_cols=114 Identities=14% Similarity=0.027 Sum_probs=73.6
Q ss_pred HHHHHHhccchhHHHHHHHHHhhchH-------HHHHHHHHHHHHHHHHHHhhhhhcc--cccchhhHHHHHHHHHHhhc
Q 036040 152 QTLVALCGLIPGYWITVILIDIIGRV-------TIQLIGFFFMTVFMLALAIPYHHWI--QKHNSTGFVVMYALTFFFAN 222 (338)
Q Consensus 152 ~~~~~~~~~~~~~~~~g~l~d~~grr-------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 222 (338)
..++..+.-++.+++..++..|.+++ .-+-++..+++.+.+++.....+.. ....+..+.+...++..++-
T Consensus 329 fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gE 408 (498)
T COG3104 329 FQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGE 408 (498)
T ss_pred HHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHH
Confidence 44555555566666667777775443 2344566666666666665532322 23345556666666666666
Q ss_pred cCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 036040 223 FGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFL 265 (338)
Q Consensus 223 ~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~ 265 (338)
....|+-.+++..+.|++..+..++........++.++..+.+
T Consensus 409 L~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 409 LFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred HHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence 7777788888999999998888888877766666666665555
No 265
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=95.64 E-value=0.0046 Score=55.54 Aligned_cols=69 Identities=17% Similarity=0.096 Sum_probs=50.8
Q ss_pred HHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHH
Q 036040 109 WLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMT 188 (338)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~ 188 (338)
.+......-.+..+++.+.+.+|+++.+.+. ++...-+..+++.+++|+++||+.+|+.++++..+..
T Consensus 20 ~~~~~~~~g~l~pll~vy~kQLGl~p~~~Gt------------l~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~ 87 (618)
T KOG3762|consen 20 YLFFGARFGSLFPLLAVYFKQLGLNPAVVGT------------LTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLS 87 (618)
T ss_pred eeeeeecccccchHHHHHHHHcCCCHHHhhh------------hhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHH
Confidence 3444455666778899999999999987443 5666666777899999999999987766666554444
Q ss_pred H
Q 036040 189 V 189 (338)
Q Consensus 189 ~ 189 (338)
+
T Consensus 88 v 88 (618)
T KOG3762|consen 88 V 88 (618)
T ss_pred H
Confidence 3
No 266
>PRK03612 spermidine synthase; Provisional
Probab=95.20 E-value=0.64 Score=43.04 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhh
Q 036040 243 STCHGISAAAGKAGAIIGAFGFLYAA 268 (338)
Q Consensus 243 ~~~~~~~~~~~~~g~~~~~~~~~~~~ 268 (338)
+...|-.+..+.+|+++|+++.+.+.
T Consensus 144 g~~~g~ly~~ntlGa~~G~l~~~~vL 169 (521)
T PRK03612 144 GHNVATVLAADYLGALVGGLAFPFLL 169 (521)
T ss_pred hhhhhhhHhHHhHHHHHHHHHHHHHH
Confidence 56678888899999999999988876
No 267
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=95.18 E-value=0.11 Score=45.71 Aligned_cols=130 Identities=17% Similarity=0.183 Sum_probs=62.8
Q ss_pred HHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeee
Q 036040 154 LVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVP 233 (338)
Q Consensus 154 ~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (338)
..-.+-.++..+++.++.+|+.-+.-.....+++.+++++.++.. + ...-++..++ ...+.+..-+.+.-.
T Consensus 66 ladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~-------~-v~~~l~Gv~l-as~ssg~GE~tfL~l 136 (402)
T PF02487_consen 66 LADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSP-------S-VWVRLLGVVL-ASLSSGLGEVTFLSL 136 (402)
T ss_pred HHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeecc-------c-hhHHHHHHHH-HhhhhhhhHHHHHHH
Confidence 333445556667788889987532223333445555555555533 1 2222222222 222222222222223
Q ss_pred cccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecc
Q 036040 234 AEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVP 308 (338)
Q Consensus 234 ~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 308 (338)
+..+|+. +.+-.......++++|+.....+.. ...+.+..+++...+.++..+..+ .+|
T Consensus 137 t~~y~~~----~l~~wssGTG~aGl~Ga~~y~~lT~------------~g~s~~~tll~~~~lp~~~~~~~f~~L~ 196 (402)
T PF02487_consen 137 THFYGKS----SLSAWSSGTGGAGLVGALYYLGLTT------------LGLSPRTTLLIMLVLPAIFLLSYFFLLP 196 (402)
T ss_pred HHhcCcc----ccccccCCcChhhHHHHHHHHHHHH------------hCcCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455543 2333334445567777777766652 234556677766666554444333 444
No 268
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=95.08 E-value=0.092 Score=47.34 Aligned_cols=60 Identities=8% Similarity=0.074 Sum_probs=30.2
Q ss_pred HHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhch
Q 036040 106 ASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGR 176 (338)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr 176 (338)
.+=|.....+++-+..|...+-++. .+++... ++..-++..+.+.++++..|++-.++.+
T Consensus 268 SlWwa~a~~g~~qv~~Y~Q~LW~~v--~~~~~~y---------NG~veA~~tllga~~a~~ag~~~~~w~~ 327 (511)
T TIGR00806 268 SLWWVFNSAGYYLITYYVHTLWGTL--DESLNKY---------NGAVDAASTLLGAITSFIAGFVNIRWAR 327 (511)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHc--CCCcccc---------CCHHHHHHHHHHHHHHHHHHhhcCCchh
Confidence 3334445556666666666665553 2221112 1223333444445567778888665543
No 269
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=95.03 E-value=0.0043 Score=53.15 Aligned_cols=51 Identities=16% Similarity=0.090 Sum_probs=2.8
Q ss_pred HHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 036040 215 ALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFL 265 (338)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~ 265 (338)
.++.++..+-..+..+.+..+..+++.|..+..+...+-..|-.+|..+.-
T Consensus 255 ~~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~ 305 (309)
T PF01733_consen 255 MLLFGFTNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSF 305 (309)
T ss_dssp ------------HHHH-----------------------------------
T ss_pred HHHHHHccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445667778888888888888877777766667666665543
No 270
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=94.93 E-value=0.35 Score=43.64 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=19.9
Q ss_pred HHHHHHHH-----hhchHHHHHHHH-HHHHHHHHHHHhh
Q 036040 165 WITVILID-----IIGRVTIQLIGF-FFMTVFMLALAIP 197 (338)
Q Consensus 165 ~~~g~l~d-----~~grr~~~~~~~-~~~~~~~~~~~~~ 197 (338)
+++.++.| |+|||+..++.. .++++.++.++..
T Consensus 53 lLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~m~~l~~~ 91 (544)
T PF13000_consen 53 LLWAPIVDSVYSKRIGRRKSWIIPIQYLSGILMLYLSYN 91 (544)
T ss_pred HhhhhhhhhhcccccCCcchhhhHHHHHHHHHHHHHHhc
Confidence 35666666 789998777643 4444445554433
No 271
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=94.70 E-value=0.23 Score=45.28 Aligned_cols=109 Identities=12% Similarity=0.015 Sum_probs=67.9
Q ss_pred chhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcc---cccc------------h---------hhHHHHHHH
Q 036040 161 IPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWI---QKHN------------S---------TGFVVMYAL 216 (338)
Q Consensus 161 ~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~------------~---------~~~~~~~~~ 216 (338)
++...+-.+++++++|.+++-+..........++++..+... +.+. . +...+....
T Consensus 73 ~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~ 152 (491)
T PF03219_consen 73 ILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVM 152 (491)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 334456789999999999887766655555555554432111 0100 0 011111111
Q ss_pred HHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 036040 217 TFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQ 269 (338)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~ 269 (338)
.-..++....-..|.+.+|+++.++-.+-+++....+++|.++++.+.....+
T Consensus 153 aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 153 AELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111112468899999999999999999999999999999988887764
No 272
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=94.08 E-value=0.39 Score=43.33 Aligned_cols=44 Identities=11% Similarity=0.015 Sum_probs=35.9
Q ss_pred eeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 036040 228 TTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQ 271 (338)
Q Consensus 228 ~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 271 (338)
...++-+.+.+|..-|+-|.+.|++.++|+-.-..+.-.+.|..
T Consensus 425 ai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~f 468 (544)
T PF13000_consen 425 AIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYF 468 (544)
T ss_pred HHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhc
Confidence 34466678889999999999999999999988877777776643
No 273
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=93.28 E-value=0.72 Score=40.64 Aligned_cols=54 Identities=7% Similarity=0.020 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHH
Q 036040 210 FVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFG 263 (338)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~ 263 (338)
+.+......+...+-..+..+.+..+..|++.+-.+-.+...+-..|...|..+
T Consensus 345 ~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~ 398 (406)
T KOG1479|consen 345 WFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL 398 (406)
T ss_pred HHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 344444444544555566777888888888887766555555544455444443
No 274
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=92.93 E-value=3.4 Score=37.43 Aligned_cols=110 Identities=10% Similarity=0.061 Sum_probs=68.9
Q ss_pred cchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhccc---cc-----------c-h----------hhHHHHH
Q 036040 160 LIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQ---KH-----------N-S----------TGFVVMY 214 (338)
Q Consensus 160 ~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----------~-~----------~~~~~~~ 214 (338)
.++..++-.++.+++.|++++-..+.....+.+++++..+...+ .+ + . +...+..
T Consensus 75 avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Y 154 (509)
T COG3202 75 AVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFY 154 (509)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHH
Confidence 34455667888888888888877766666666666655431110 00 1 0 1111111
Q ss_pred HHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 036040 215 ALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQ 269 (338)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~ 269 (338)
.+.-.-.+....-..|....|++..++-.+-+++.+..++++..++..+..++..
T Consensus 155 i~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 155 IMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1111111111122467778999999999999999999999999999988888763
No 275
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=90.14 E-value=13 Score=33.03 Aligned_cols=57 Identities=12% Similarity=-0.091 Sum_probs=27.2
Q ss_pred HHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHh
Q 036040 108 TWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDI 173 (338)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 173 (338)
........++.+.+-.+.+.++.-..+. +.......+....+..++....-.++.-|
T Consensus 26 lGiG~LlpWN~fiTa~~y~~~~~~~~~~---------~~~F~~~~~~~a~i~~ll~~~~n~~~~~~ 82 (406)
T KOG1479|consen 26 LGIGTLLPWNMFITASDYYYYRFPGYHN---------SKNFTSSYTLAAQIPLLLFNLLNAFLNTR 82 (406)
T ss_pred HhcccccchHhhhccHHHHHhhcCCCch---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445566666666666555322221 12223334444444455555555555556
No 276
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=89.63 E-value=1.6 Score=32.75 Aligned_cols=88 Identities=8% Similarity=0.076 Sum_probs=46.8
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccc---cchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhh
Q 036040 168 VILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQK---HNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRST 244 (338)
Q Consensus 168 g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~ 244 (338)
-.++||+-||..+..+.-. ++++..+...+...... -+.+..++.-.+ +++.+...+.|.+++-...++.-|.
T Consensus 55 ~~Vs~RM~rRm~~~~GiP~-~lG~~~f~~~y~l~~~~~~dvP~~~~~~~S~~---~Fg~gllGisYGilSaSWD~~r~GS 130 (153)
T PF11947_consen 55 EVVSNRMLRRMAVFVGIPT-ALGVAVFVVFYYLKSRQIVDVPPWAVLLVSLV---FFGLGLLGISYGILSASWDPEREGS 130 (153)
T ss_pred HHHHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHhccccccCchHHHHHHHH---HHHHHHHhhhhhhcccccCCCCCCC
Confidence 4468999998777665322 22222222111111111 112222222222 2223334456777777888888899
Q ss_pred hHHHHHHHHHHHHHH
Q 036040 245 CHGISAAAGKAGAII 259 (338)
Q Consensus 245 ~~~~~~~~~~~g~~~ 259 (338)
..|+-.+-.+++-+.
T Consensus 131 llG~~e~~~N~~r~~ 145 (153)
T PF11947_consen 131 LLGWEEFKRNWGRMW 145 (153)
T ss_pred cccHHHHHHhHHHHH
Confidence 999988877776554
No 277
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=87.46 E-value=0.31 Score=40.32 Aligned_cols=31 Identities=16% Similarity=-0.070 Sum_probs=20.8
Q ss_pred HHHHHhccchhHHHHHHHHHhhchHHHHHHH
Q 036040 153 TLVALCGLIPGYWITVILIDIIGRVTIQLIG 183 (338)
Q Consensus 153 ~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~ 183 (338)
.+.......+...+.|-++||-|||+..+.-
T Consensus 78 fiaGfgSsmLFGtivgSLaDkqGRKracvty 108 (454)
T KOG4332|consen 78 FIAGFGSSMLFGTIVGSLADKQGRKRACVTY 108 (454)
T ss_pred eecccchHHHHHHHHHHHHhhhccccceeee
Confidence 3333444445566778999999999875544
No 278
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=85.98 E-value=16 Score=30.72 Aligned_cols=97 Identities=11% Similarity=-0.009 Sum_probs=48.1
Q ss_pred HHHHHHhccchhHHHHHHHHHhhchH--HHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCcccee
Q 036040 152 QTLVALCGLIPGYWITVILIDIIGRV--TIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTT 229 (338)
Q Consensus 152 ~~~~~~~~~~~~~~~~g~l~d~~grr--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (338)
+.....++.++|+-+...+..|-..| ..+.+..++.+....+............+....++.++.+- .+.+..+|..
T Consensus 287 iFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E-~cvGlfwPSi 365 (454)
T KOG4332|consen 287 IFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFE-ACVGLFWPSI 365 (454)
T ss_pred HHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHH-HHHhhcchHH
Confidence 34444555566666665655543332 34444444444443333332221111222233333333333 3344456666
Q ss_pred eeeecccCCccchhhhHHHH
Q 036040 230 FIVPAEIFPARFRSTCHGIS 249 (338)
Q Consensus 230 ~~~~~e~~p~~~R~~~~~~~ 249 (338)
.-+-+...|.+.|++.+-+.
T Consensus 366 mkmRsqyIPEearstimNfF 385 (454)
T KOG4332|consen 366 MKMRSQYIPEEARSTIMNFF 385 (454)
T ss_pred HHHHHhhCCHHHHhhhhhhe
Confidence 67778889999998765544
No 279
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=85.55 E-value=23 Score=30.65 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=19.9
Q ss_pred hccchhHHHHHHHHHhhchHHHHHHHHH
Q 036040 158 CGLIPGYWITVILIDIIGRVTIQLIGFF 185 (338)
Q Consensus 158 ~~~~~~~~~~g~l~d~~grr~~~~~~~~ 185 (338)
+.-+..+++.+.++.++|-|+++..+..
T Consensus 69 ~~l~~s~m~~~~~Ir~~g~K~tm~lav~ 96 (390)
T KOG3097|consen 69 LSLIDSSMFMPLLIRFLGTKWTMVLAVF 96 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3334455566789999999999877633
No 280
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.18 E-value=2.1 Score=29.63 Aligned_cols=31 Identities=23% Similarity=0.059 Sum_probs=19.2
Q ss_pred chhHHHHHHHHHhh-chHHHHHHHHHHHHHHH
Q 036040 161 IPGYWITVILIDII-GRVTIQLIGFFFMTVFM 191 (338)
Q Consensus 161 ~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~ 191 (338)
++.....||+.||+ |.+++.++.+++.+++.
T Consensus 56 ilVGa~iG~llD~~agTsPwglIv~lllGf~A 87 (116)
T COG5336 56 ILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGA 87 (116)
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 33444579999996 67776666544444433
No 281
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=83.53 E-value=1.8 Score=37.85 Aligned_cols=42 Identities=14% Similarity=0.067 Sum_probs=35.9
Q ss_pred eeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 036040 228 TTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQ 269 (338)
Q Consensus 228 ~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~ 269 (338)
..++..+.+.|+..-|+-|.+.++..++|+-.-..+...+.|
T Consensus 389 ~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D 430 (510)
T KOG3574|consen 389 SGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLAD 430 (510)
T ss_pred HHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcc
Confidence 345667889999999999999999999998888888887764
No 282
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=83.10 E-value=15 Score=33.30 Aligned_cols=25 Identities=12% Similarity=0.211 Sum_probs=12.5
Q ss_pred HHHHhhccCccceeeeeecccCCccc
Q 036040 216 LTFFFANFGPNSTTFIVPAEIFPARF 241 (338)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~e~~p~~~ 241 (338)
++.+.+.....+..+.+.+ .+|++.
T Consensus 114 ~~~g~~~~~~q~s~~gla~-~fp~~~ 138 (437)
T TIGR00939 114 VIINSGMALLQGSLFGLAG-VFPSTY 138 (437)
T ss_pred HHHHhhhhhhcccchhhcc-cCCHHH
Confidence 3334444444455555555 667654
No 283
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=81.56 E-value=12 Score=32.55 Aligned_cols=66 Identities=15% Similarity=0.102 Sum_probs=34.3
Q ss_pred HHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHH
Q 036040 106 ASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQL 181 (338)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~ 181 (338)
.+-|.....++|-+..|...+=++.. ++... ...+..-++..+.+.++.+..|++.-++.|..-++
T Consensus 240 SlWwAl~scg~~QV~nY~Q~LW~~~~--~~~~~--------vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~l 305 (433)
T KOG3810|consen 240 SLWWALASCGYYQVTNYTQILWKEVA--PNPAN--------VYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLL 305 (433)
T ss_pred HHHHHHhhchhHHHHHHHHHHHHhhC--CCchh--------hhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHH
Confidence 33344455566666666666555533 21110 01222334444555667778888877776654333
No 284
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=77.85 E-value=6.3 Score=33.61 Aligned_cols=61 Identities=13% Similarity=-0.037 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 036040 207 STGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYA 267 (338)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~ 267 (338)
..+.++++++.-+..+++.+...+--+.+-.+++.|-.+++.+.....+|-.++.++.-.+
T Consensus 341 si~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 341 SIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 3444555555555555555444444455667888999999999887777777777665444
No 285
>PRK10263 DNA translocase FtsK; Provisional
Probab=75.35 E-value=28 Score=35.94 Aligned_cols=19 Identities=37% Similarity=0.674 Sum_probs=9.0
Q ss_pred HhccchhHHHHHHHHHhhc
Q 036040 157 LCGLIPGYWITVILIDIIG 175 (338)
Q Consensus 157 ~~~~~~~~~~~g~l~d~~g 175 (338)
..++.+|..+...+..-+|
T Consensus 62 Nl~GiVGA~LAD~L~~LFG 80 (1355)
T PRK10263 62 NLGGMPGAWLADTLFFIFG 80 (1355)
T ss_pred cccchHHHHHHHHHHHHHh
Confidence 3444444444444444445
No 286
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=74.86 E-value=56 Score=28.66 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 036040 247 GISAAAGKAGAIIGAFGFLYAA 268 (338)
Q Consensus 247 ~~~~~~~~~g~~~~~~~~~~~~ 268 (338)
+.....-.+|+..+.+..+++.
T Consensus 142 s~vl~~DYLGal~~gLl~p~ll 163 (508)
T COG4262 142 SRVLTLDYLGALAGGLLWPFLL 163 (508)
T ss_pred hhhhhhHhhhhhhHHHHHHHHH
Confidence 3334456788888888888776
No 287
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=74.79 E-value=41 Score=27.19 Aligned_cols=19 Identities=11% Similarity=0.085 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHhhchHHHH
Q 036040 162 PGYWITVILIDIIGRVTIQ 180 (338)
Q Consensus 162 ~~~~~~g~l~d~~grr~~~ 180 (338)
+.-++.|++.-|+++++..
T Consensus 176 ~aL~~~G~~~a~~~~~~~~ 194 (218)
T cd02432 176 LALALTGYVSARLGGASVL 194 (218)
T ss_pred HHHHHHHHHHHHHCCCCHH
Confidence 3344556666666555444
No 288
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=74.63 E-value=51 Score=30.48 Aligned_cols=32 Identities=19% Similarity=0.092 Sum_probs=21.5
Q ss_pred HHhccchhHHHHHHHHHhhchHHHHHHHHHHH
Q 036040 156 ALCGLIPGYWITVILIDIIGRVTIQLIGFFFM 187 (338)
Q Consensus 156 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~ 187 (338)
.++..++..++++.+..|+|-+...++.-+++
T Consensus 328 tGivtii~~~l~~~iir~~GW~~~AlitPiv~ 359 (491)
T PF03219_consen 328 TGIVTIIMMFLSSNIIRRFGWRTAALITPIVI 359 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHH
Confidence 34444555577899999999887766653333
No 289
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=70.82 E-value=5.4 Score=35.87 Aligned_cols=79 Identities=14% Similarity=-0.010 Sum_probs=44.4
Q ss_pred HHHHHHHHHhHhhhhhhccHHHHHHH--ccCCCCCCC----CChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchH
Q 036040 104 GTASTWLLLDVSYFSQNLFQKEIFTA--VGWLPAAHT----MGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRV 177 (338)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr 177 (338)
.+++...+.-+..+.+..|...++.+ .+=+|..-. ...++.....+.+-..+..+...+.+....++.+|+|-|
T Consensus 283 ~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~~~l~~~~g~r 362 (498)
T KOG0637|consen 283 MLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLVEKLSRKFGTR 362 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 33444444444455555555555544 222222211 113444555666677777777777888899999999944
Q ss_pred HHHHH
Q 036040 178 TIQLI 182 (338)
Q Consensus 178 ~~~~~ 182 (338)
+.+..
T Consensus 363 ~~y~~ 367 (498)
T KOG0637|consen 363 KRYWG 367 (498)
T ss_pred eEEee
Confidence 44333
No 290
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]
Probab=63.96 E-value=36 Score=30.18 Aligned_cols=38 Identities=11% Similarity=-0.018 Sum_probs=24.7
Q ss_pred HhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 036040 157 LCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLAL 194 (338)
Q Consensus 157 ~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 194 (338)
....++...+.|...|+..|++++...+.+--++.++.
T Consensus 73 sgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~va 110 (503)
T KOG2601|consen 73 SGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVA 110 (503)
T ss_pred HhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHH
Confidence 33344445556788999999998887766554444433
No 291
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=60.07 E-value=1.4e+02 Score=28.00 Aligned_cols=24 Identities=8% Similarity=0.083 Sum_probs=13.1
Q ss_pred HHHHHhccchhHHHHHHHHHhhch
Q 036040 153 TLVALCGLIPGYWITVILIDIIGR 176 (338)
Q Consensus 153 ~~~~~~~~~~~~~~~g~l~d~~gr 176 (338)
.....+.+++++.+++.+...+|.
T Consensus 303 i~~y~~~~~iaGy~S~~~yk~~~g 326 (521)
T PF02990_consen 303 IILYALTSFIAGYVSARLYKSFGG 326 (521)
T ss_pred HHHHHHHhhHHHHHHHHHHHHcCC
Confidence 344455555555566666655554
No 292
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=58.16 E-value=13 Score=32.41 Aligned_cols=124 Identities=10% Similarity=0.077 Sum_probs=67.4
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHH
Q 036040 168 VILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHG 247 (338)
Q Consensus 168 g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~ 247 (338)
-.+.|...-|++++.-.+....+..++.+... ...+-++=++.+.. ...-...++++=+..+++.+-++.|
T Consensus 63 FlLTD~lrYKPvivlq~ls~v~~w~~lv~g~s--------V~~mQvlE~FyG~~-tAaEIAYysYIYs~Vd~~~Yqrvt~ 133 (433)
T KOG3810|consen 63 FLLTDYLRYKPVVVLQALSGVPVWIMLVFGPS--------VKAMQVLEFFYGPA-TAAEIAYYSYIYSKVDPEMYKRVTG 133 (433)
T ss_pred HHHhhhhhcceeeeeeccchhHHHHHHHhcCC--------chheeeehhhcChH-HHHHHhhhheeeeecCHHHHHHHHH
Confidence 34688877787776654433344443333321 11111111111111 1122345667777889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecccCC
Q 036040 248 ISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVPEPN 311 (338)
Q Consensus 248 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 311 (338)
.+-...-.|-..|..+...+... +..++...=.+-.....++.++..++|..+
T Consensus 134 y~RaA~L~g~~~g~vlaQlLvs~-----------~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~ 186 (433)
T KOG3810|consen 134 YCRAAFLVGKFVGSVLAQLLVSL-----------ETLSYTTLNYISLAEVTIAVLLALFLPRVK 186 (433)
T ss_pred HhHHHHHHHhHHHhHHHHHHhhh-----------cccchhhhchhhHHHHHHHHHHHhhCCCCc
Confidence 98888777888887777777631 233443333333333344555555777655
No 293
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=56.35 E-value=65 Score=22.33 Aligned_cols=27 Identities=11% Similarity=0.012 Sum_probs=13.6
Q ss_pred hHHHHHHHHHhhchHHHHHHHHHHHHH
Q 036040 163 GYWITVILIDIIGRVTIQLIGFFFMTV 189 (338)
Q Consensus 163 ~~~~~g~l~d~~grr~~~~~~~~~~~~ 189 (338)
|.+++-||=.+++-++.+.+.+++.++
T Consensus 59 G~~lG~WLD~~~~t~~~~tl~~lllGv 85 (100)
T TIGR02230 59 GVAVGIWLDRHYPSPFSWTLTMLIVGV 85 (100)
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence 444445555567766655544433333
No 294
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=53.73 E-value=1.2e+02 Score=24.46 Aligned_cols=14 Identities=14% Similarity=-0.057 Sum_probs=7.0
Q ss_pred HHHHHHHhhchHHH
Q 036040 166 ITVILIDIIGRVTI 179 (338)
Q Consensus 166 ~~g~l~d~~grr~~ 179 (338)
+.|++..|+..++.
T Consensus 176 ~~G~~~a~~~~~~~ 189 (213)
T PF01988_consen 176 ILGYFKARISGQSW 189 (213)
T ss_pred HHHHHHHHHcCCcH
Confidence 44555555554433
No 295
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=53.63 E-value=1.8e+02 Score=26.77 Aligned_cols=37 Identities=16% Similarity=0.060 Sum_probs=23.4
Q ss_pred HHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHH
Q 036040 153 TLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTV 189 (338)
Q Consensus 153 ~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 189 (338)
....++..++..++.+++.+|+|-+...++.-+++.+
T Consensus 309 ~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 309 STWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344444455566669999999988766665444433
No 296
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=52.45 E-value=1.1e+02 Score=23.79 Aligned_cols=6 Identities=33% Similarity=0.639 Sum_probs=2.2
Q ss_pred chhHHH
Q 036040 55 NNIIEQ 60 (338)
Q Consensus 55 ~~~~~~ 60 (338)
+++.++
T Consensus 44 eeii~~ 49 (181)
T PF08006_consen 44 EEIIAE 49 (181)
T ss_pred HHHHHH
Confidence 333333
No 297
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=51.53 E-value=2e+02 Score=26.59 Aligned_cols=29 Identities=28% Similarity=0.182 Sum_probs=17.6
Q ss_pred cchhHHHHHHHHHhhchHHHHHHHHHHHH
Q 036040 160 LIPGYWITVILIDIIGRVTIQLIGFFFMT 188 (338)
Q Consensus 160 ~~~~~~~~g~l~d~~grr~~~~~~~~~~~ 188 (338)
.++....++.+..|.|-...-++.-+++.
T Consensus 335 ~v~~~~~~s~~ir~~GW~~~AlitPiv~l 363 (509)
T COG3202 335 LVVFLFPGSNLIRRVGWFTGALITPLVML 363 (509)
T ss_pred HHHHHhhhHHHHHHhhHHHHHHHHHHHHH
Confidence 44455577888888887665555433333
No 298
>COG1288 Predicted membrane protein [Function unknown]
Probab=50.76 E-value=1.9e+02 Score=26.18 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=12.9
Q ss_pred CchhhhhhhHH-HHHHHHHH-HhccCCch
Q 036040 1 WRIVLMFGALP-IAFTYYWR-MKMPETPH 27 (338)
Q Consensus 1 WR~~f~~~~i~-~~i~~~~~-~~lpEsp~ 27 (338)
||.+.++.... +++.+..+ ..+.+.|.
T Consensus 218 ~Riv~~v~~~~~~i~y~~~Ya~KvkkdP~ 246 (481)
T COG1288 218 LRIVVWVVFTLISIIYVYWYASKVKKDPT 246 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 67777765443 33333222 23545444
No 299
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=49.55 E-value=90 Score=21.95 Aligned_cols=34 Identities=15% Similarity=0.009 Sum_probs=23.6
Q ss_pred HHHHHHHhccchhHHHHHHHHHhhchHHHHHHHH
Q 036040 151 AQTLVALCGLIPGYWITVILIDIIGRVTIQLIGF 184 (338)
Q Consensus 151 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~ 184 (338)
.......++..++..+.+.+.|..|.+..+.+..
T Consensus 91 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (141)
T TIGR00880 91 LMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLA 124 (141)
T ss_pred HHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHH
Confidence 3455566777778888888888888766655543
No 300
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=49.21 E-value=5.6 Score=32.87 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=0.0
Q ss_pred HHHhhchHHHHHHH
Q 036040 170 LIDIIGRVTIQLIG 183 (338)
Q Consensus 170 l~d~~grr~~~~~~ 183 (338)
++--+.||.+.-.+
T Consensus 68 IImlF~RrLLCPLG 81 (381)
T PF05297_consen 68 IIMLFKRRLLCPLG 81 (381)
T ss_dssp --------------
T ss_pred HHHHHHHhhcCcch
Confidence 34456666554444
No 301
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=49.01 E-value=1.5e+02 Score=24.21 Aligned_cols=18 Identities=0% Similarity=-0.193 Sum_probs=9.9
Q ss_pred hHHHHHHHHHhhchHHHH
Q 036040 163 GYWITVILIDIIGRVTIQ 180 (338)
Q Consensus 163 ~~~~~g~l~d~~grr~~~ 180 (338)
.-.+.|++.-+++.++..
T Consensus 183 ~L~~~G~~~~~~~~~~~~ 200 (225)
T cd02434 183 TLFLLGSFKSKLYNGKWI 200 (225)
T ss_pred HHHHHHHHHHHhcCCchH
Confidence 344556666666554443
No 302
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=47.97 E-value=1.2e+02 Score=26.53 Aligned_cols=17 Identities=18% Similarity=0.161 Sum_probs=7.3
Q ss_pred HHHHHHHhHhheeeccc
Q 036040 293 LAAVNVLGLLFTFLVPE 309 (338)
Q Consensus 293 ~~~~~~~~~~~~~~~~e 309 (338)
.+.+.++..+..+...|
T Consensus 291 ~af~lIiiG~vvy~~~~ 307 (334)
T PF06027_consen 291 LAFALIIIGFVVYNLAE 307 (334)
T ss_pred HHHHHHHHHhheEEccC
Confidence 34444444444443433
No 303
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=47.07 E-value=34 Score=17.44 Aligned_cols=15 Identities=13% Similarity=0.288 Sum_probs=6.3
Q ss_pred HHHHHHHHhccCCch
Q 036040 13 AFTYYWRMKMPETPH 27 (338)
Q Consensus 13 ~i~~~~~~~lpEsp~ 27 (338)
+..+++..+.+|.||
T Consensus 14 lgilffAI~FRePPr 28 (29)
T PF01405_consen 14 LGILFFAIFFREPPR 28 (29)
T ss_dssp HHHHHHHHHSS----
T ss_pred HHHHHhhhhccCCCC
Confidence 334455567899987
No 304
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=44.81 E-value=14 Score=26.98 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=11.5
Q ss_pred chhhhhhhHHHHHHHHHHH
Q 036040 2 RIVLMFGALPIAFTYYWRM 20 (338)
Q Consensus 2 R~~f~~~~i~~~i~~~~~~ 20 (338)
||++++..|.+++++++.+
T Consensus 1 RW~l~~iii~~i~l~~~~~ 19 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLF 19 (130)
T ss_pred CeeeHHHHHHHHHHHHHHH
Confidence 7887776665555444443
No 305
>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Probab=42.17 E-value=26 Score=21.71 Aligned_cols=26 Identities=12% Similarity=0.262 Sum_probs=14.6
Q ss_pred chhhhhhhHH---H-HHHHHHHHhccCCch
Q 036040 2 RIVLMFGALP---I-AFTYYWRMKMPETPH 27 (338)
Q Consensus 2 R~~f~~~~i~---~-~i~~~~~~~lpEsp~ 27 (338)
|..|.+..+. + ++-+++++.+|+.|.
T Consensus 32 Rl~~v~l~~~~~~~~l~Y~~~w~~lP~~~~ 61 (61)
T PF04024_consen 32 RLIFVVLTFFTGGGILLYLILWLLLPKEPE 61 (61)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHcCCCCC
Confidence 6666654442 2 234455667898763
No 306
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=42.06 E-value=37 Score=30.04 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=12.8
Q ss_pred CccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 036040 238 PARFRSTCHGISAAAGKAGAIIGAFGFLYA 267 (338)
Q Consensus 238 p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~ 267 (338)
|.+.|+.. .....+++.+.+--|++....
T Consensus 90 ~~~~~~~~-~~~~~~~N~~~lglpi~~~l~ 118 (385)
T PF03547_consen 90 PKEWRGVF-VLAASFGNTGFLGLPILQALF 118 (385)
T ss_pred CcccceEE-EecccCCcchhhHHHHHHHHh
Confidence 44444432 223334555555555444443
No 307
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=41.32 E-value=1.1e+02 Score=25.42 Aligned_cols=27 Identities=22% Similarity=-0.010 Sum_probs=16.8
Q ss_pred HhccchhHHHHHHHHHhhchHHHHHHH
Q 036040 157 LCGLIPGYWITVILIDIIGRVTIQLIG 183 (338)
Q Consensus 157 ~~~~~~~~~~~g~l~d~~grr~~~~~~ 183 (338)
.++..+..+-+-+++.|+.-|++.+++
T Consensus 250 ~lCT~lAVigGk~lAskIS~rtVt~~g 276 (294)
T KOG2881|consen 250 ALCTGLAVIGGKYLASKISVRTVTLIG 276 (294)
T ss_pred HHHHHHHHhhhHHHhhhheeEEEEEec
Confidence 334444444556777888877777666
No 308
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=40.57 E-value=72 Score=22.89 Aligned_cols=14 Identities=7% Similarity=0.112 Sum_probs=9.3
Q ss_pred HHHHHHhccCCchh
Q 036040 15 TYYWRMKMPETPHY 28 (338)
Q Consensus 15 ~~~~~~~lpEsp~~ 28 (338)
-+++++.+|+.|..
T Consensus 56 Yi~l~~~lp~~P~~ 69 (118)
T PRK10697 56 YIILSFALDPMPDN 69 (118)
T ss_pred HHHHHHhccCCccc
Confidence 44556678887754
No 309
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=40.56 E-value=82 Score=23.30 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=16.3
Q ss_pred ecccCCccchhhhHHHHHHHHH
Q 036040 233 PAEIFPARFRSTCHGISAAAGK 254 (338)
Q Consensus 233 ~~e~~p~~~R~~~~~~~~~~~~ 254 (338)
+.|++|+..|....+.......
T Consensus 60 Lkdi~P~~~R~~i~~~~~~~~~ 81 (137)
T PF04281_consen 60 LKDIFPPSVRNWISSTVSTTSS 81 (137)
T ss_pred HhccCCHHHHHHHHHHHHHHHH
Confidence 4789999999987776655433
No 310
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=40.54 E-value=38 Score=20.61 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=16.0
Q ss_pred CchhhhhhhHHHHHHHHHHH
Q 036040 1 WRIVLMFGALPIAFTYYWRM 20 (338)
Q Consensus 1 WR~~f~~~~i~~~i~~~~~~ 20 (338)
||...+++++.+++.+.++.
T Consensus 5 ~r~~~~~ggfVg~iG~a~Yp 24 (58)
T PF15061_consen 5 WRYALFVGGFVGLIGAALYP 24 (58)
T ss_pred ccchhhHHHHHHHHHHHHhh
Confidence 89999999998888765543
No 311
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=39.52 E-value=1.1e+02 Score=23.97 Aligned_cols=28 Identities=7% Similarity=-0.002 Sum_probs=19.5
Q ss_pred HHHHHHHhccchhHHHHHHHHHhhchHH
Q 036040 151 AQTLVALCGLIPGYWITVILIDIIGRVT 178 (338)
Q Consensus 151 ~~~~~~~~~~~~~~~~~g~l~d~~grr~ 178 (338)
.......+..++++++++++..|.-||.
T Consensus 156 ~~~~~~~~~~~v~a~lG~~lG~kllkKH 183 (186)
T PF09605_consen 156 WMLIIIIIITFVGALLGALLGKKLLKKH 183 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555566677777778888887776664
No 312
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=39.41 E-value=47 Score=17.16 Aligned_cols=14 Identities=14% Similarity=0.565 Sum_probs=9.3
Q ss_pred HHHHHHhccCCchh
Q 036040 15 TYYWRMKMPETPHY 28 (338)
Q Consensus 15 ~~~~~~~lpEsp~~ 28 (338)
.+++..+.+|+||.
T Consensus 16 iiFFAIfFRepPri 29 (31)
T PRK11875 16 TLFFAIAFRDPPKI 29 (31)
T ss_pred HHHHhhhccCCCCC
Confidence 34444568999985
No 313
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=38.64 E-value=34 Score=23.95 Aligned_cols=35 Identities=9% Similarity=-0.036 Sum_probs=22.5
Q ss_pred CCcchHHHHHHHHHHHHHhHhhee-ecccCCCCChh
Q 036040 282 AGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNGRSLE 316 (338)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~ 316 (338)
+..+|..++++...++++.+.+.+ +.|++.-++-.
T Consensus 55 d~e~we~~~f~~~~~~~v~~~~~~~y~PD~~i~~WA 90 (105)
T PF10183_consen 55 DWEGWELPFFFGFSGSLVFGGVFLAYKPDTSIQTWA 90 (105)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 456788888765555555444444 88988765443
No 314
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=37.74 E-value=1.4e+02 Score=23.01 Aligned_cols=16 Identities=19% Similarity=0.052 Sum_probs=9.0
Q ss_pred ccchhhchhhhhhhhh
Q 036040 83 KGISFGLFSKMFARRH 98 (338)
Q Consensus 83 ~~~~~~~~~~~~~~~~ 98 (338)
.-+|-+.|+-+..++.
T Consensus 24 ~L~W~~ffkLRk~rrr 39 (173)
T PF08566_consen 24 QLTWNEFFKLRKSRRR 39 (173)
T ss_pred CCCHHHHHHHHHHhhH
Confidence 3456666665555553
No 315
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=37.39 E-value=46 Score=23.28 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=17.7
Q ss_pred CchhhhhhhHHHHH-HHHHHHhccCCc
Q 036040 1 WRIVLMFGALPIAF-TYYWRMKMPETP 26 (338)
Q Consensus 1 WR~~f~~~~i~~~i-~~~~~~~lpEsp 26 (338)
|+.+|+++...+++ +.+.+.+.||+.
T Consensus 59 we~~~f~~~~~~~v~~~~~~~y~PD~~ 85 (105)
T PF10183_consen 59 WELPFFFGFSGSLVFGGVFLAYKPDTS 85 (105)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 77888887666655 445556678875
No 316
>CHL00031 psbT photosystem II protein T
Probab=36.88 E-value=50 Score=17.38 Aligned_cols=14 Identities=14% Similarity=0.418 Sum_probs=9.6
Q ss_pred HHHHHHhccCCchh
Q 036040 15 TYYWRMKMPETPHY 28 (338)
Q Consensus 15 ~~~~~~~lpEsp~~ 28 (338)
.+++..+.+|.||.
T Consensus 16 ilFFAI~FRePPri 29 (33)
T CHL00031 16 IIFFAIFFREPPKV 29 (33)
T ss_pred HHHHhheecCCCCC
Confidence 34445578999986
No 317
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=36.36 E-value=85 Score=23.33 Aligned_cols=20 Identities=15% Similarity=0.082 Sum_probs=15.2
Q ss_pred ecccCCccchhhhHHHHHHH
Q 036040 233 PAEIFPARFRSTCHGISAAA 252 (338)
Q Consensus 233 ~~e~~p~~~R~~~~~~~~~~ 252 (338)
+.|++|+..|....+.....
T Consensus 58 LkDm~Pp~~R~~i~~~~s~t 77 (145)
T TIGR00986 58 LKDIVPPTTRGWIYHKYSTT 77 (145)
T ss_pred HHhhCCHHHHHHHHHHHHHH
Confidence 47899999998876666543
No 318
>PF08570 DUF1761: Protein of unknown function (DUF1761); InterPro: IPR013879 This entry shows conserved fungal proteins with unknown function.
Probab=36.27 E-value=1.6e+02 Score=21.16 Aligned_cols=67 Identities=18% Similarity=0.288 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhc
Q 036040 101 HLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIG 175 (338)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 175 (338)
.++...+..+......|+.. |...+.+..|.++++...... ........++.++.+...+.+..+.+
T Consensus 3 avlvaa~~~~~~G~lWY~pl-Fg~~W~~~~g~~~~~~~~~~~-------~~~~~~~~~~~~v~a~~la~~~~~~~ 69 (126)
T PF08570_consen 3 AVLVAAIAAFVLGFLWYGPL-FGKAWMRAMGITPEDAKKGNP-------AKPFIISFLGSLVQAYFLAHLLAATG 69 (126)
T ss_pred HHHHHHHHHHHHHHHHHhHH-HHHHHHHHcCCCcccccCcch-------hhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666777788889887 899999999988877332111 00333344444455555555555555
No 319
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.23 E-value=1.5e+02 Score=20.80 Aligned_cols=34 Identities=6% Similarity=0.081 Sum_probs=26.1
Q ss_pred CccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 036040 238 PARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQ 271 (338)
Q Consensus 238 p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 271 (338)
.++.++.+.++-...-.+++++.....+++.+..
T Consensus 36 a~s~k~~~~a~klssefIsGilVGa~iG~llD~~ 69 (116)
T COG5336 36 AESIKGYAQAFKLSSEFISGILVGAGIGWLLDKF 69 (116)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456778888888888888888888888888644
No 320
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=35.48 E-value=2.2e+02 Score=22.35 Aligned_cols=43 Identities=7% Similarity=0.094 Sum_probs=31.7
Q ss_pred HHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 036040 153 TLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALA 195 (338)
Q Consensus 153 ~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 195 (338)
.....+..++++++.-.+..|.++|....+...+.++...+.+
T Consensus 34 ~~~~~i~ali~g~vyml~~~KV~K~G~~~i~~~i~gl~~~~~G 76 (186)
T PF09605_consen 34 LFMPAIAALICGIVYMLMVAKVPKRGAFLIMGIIMGLIFFLMG 76 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHh
Confidence 4445566667777888899999999998887766666655554
No 321
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=34.58 E-value=2.4e+02 Score=22.46 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=21.2
Q ss_pred HHHHhccchhHHHHHHHHH---hhchHHHHHHHHHHHHHHHHHHHh
Q 036040 154 LVALCGLIPGYWITVILID---IIGRVTIQLIGFFFMTVFMLALAI 196 (338)
Q Consensus 154 ~~~~~~~~~~~~~~g~l~d---~~grr~~~~~~~~~~~~~~~~~~~ 196 (338)
....++.++|..+++.+.+ +..+|+..........+.+.+...
T Consensus 53 ~~~i~~F~~G~~~~~~i~~~~~~~~~~~~~~~~l~~~~~ll~~~~~ 98 (209)
T PF06912_consen 53 LLAILSFILGAFLAGLIVRRSRRRRRRRWYRILLLLEAILLLIAAL 98 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHH
Confidence 4444455566667777732 333444444444444444444443
No 322
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=33.20 E-value=1.5e+02 Score=19.96 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhHhhhhhhccHHHHHHH
Q 036040 100 LHLLGTASTWLLLDVSYFSQNLFQKEIFTA 129 (338)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (338)
+..+.+....+..+.++-....+.|.++..
T Consensus 16 r~~~~l~~i~l~~y~~~~ll~a~~p~~m~~ 45 (91)
T PF04341_consen 16 RLAWPLSAIFLVLYFGFVLLSAFAPELMAT 45 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHHcC
Confidence 344555555556566666666677766543
No 323
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=31.21 E-value=3e+02 Score=22.61 Aligned_cols=16 Identities=6% Similarity=-0.016 Sum_probs=8.7
Q ss_pred HHHHHHHHhhchHHHH
Q 036040 165 WITVILIDIIGRVTIQ 180 (338)
Q Consensus 165 ~~~g~l~d~~grr~~~ 180 (338)
.+.|++.-|++++...
T Consensus 194 ~~lG~~~a~~s~~~~~ 209 (234)
T cd02433 194 LATGAVTGLLSGRSPG 209 (234)
T ss_pred HHHHHHHHhhCCCcHH
Confidence 3456666666555444
No 324
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=29.57 E-value=5.6e+02 Score=25.25 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=17.6
Q ss_pred HHHHHHHhccchhHHHHHHHHHhh
Q 036040 151 AQTLVALCGLIPGYWITVILIDII 174 (338)
Q Consensus 151 ~~~~~~~~~~~~~~~~~g~l~d~~ 174 (338)
....+..+.++.+.++.-.+.|+.
T Consensus 161 ~~sl~l~i~~l~~p~~~q~viD~V 184 (709)
T COG2274 161 LASLLLQLLALATPLFSQIVIDKV 184 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555666677788889999996
No 325
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=29.51 E-value=2.1e+02 Score=20.35 Aligned_cols=32 Identities=13% Similarity=0.023 Sum_probs=17.9
Q ss_pred HHHhccchhHHHHHHHHHhhchHHHHHHHHHH
Q 036040 155 VALCGLIPGYWITVILIDIIGRVTIQLIGFFF 186 (338)
Q Consensus 155 ~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~ 186 (338)
...+..+++.+++|.++-|..+++-++.+...
T Consensus 42 ~~~~i~~ls~~~GG~~a~~~~~~kG~l~G~~~ 73 (116)
T PF12670_consen 42 LVVIIYILSVFIGGFYAGRKAGSKGWLHGLLV 73 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 33444455666777777766554444455433
No 326
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=28.41 E-value=1.5e+02 Score=18.40 Aligned_cols=31 Identities=13% Similarity=0.005 Sum_probs=16.9
Q ss_pred HHHHHHHHhccchhHHHHHHHHHhhchHHHH
Q 036040 150 RAQTLVALCGLIPGYWITVILIDIIGRVTIQ 180 (338)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 180 (338)
........+...+|..++.++.++++++.-.
T Consensus 27 ~~ig~~~~~~~~~G~~~G~~~~~~~~~~~~~ 57 (67)
T PF02659_consen 27 LIIGIFQFIMPLLGLLLGRRLGRFIGSYAEW 57 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555666666666666655333
No 327
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=27.92 E-value=2.3e+02 Score=26.13 Aligned_cols=14 Identities=21% Similarity=0.159 Sum_probs=7.7
Q ss_pred HHHHHhhchHHHHH
Q 036040 168 VILIDIIGRVTIQL 181 (338)
Q Consensus 168 g~l~d~~grr~~~~ 181 (338)
..+..|+++|+...
T Consensus 105 ~~l~k~l~~~~~~~ 118 (465)
T PF03606_consen 105 NLLIKPLKGKKNPL 118 (465)
T ss_pred HHHHHHhcCCcchh
Confidence 45567776554333
No 328
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=26.86 E-value=3.7e+02 Score=22.34 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=12.4
Q ss_pred HHhccchhHHHHHHHHHhhchHHHHH
Q 036040 156 ALCGLIPGYWITVILIDIIGRVTIQL 181 (338)
Q Consensus 156 ~~~~~~~~~~~~g~l~d~~grr~~~~ 181 (338)
.++.+.++..+.-++. |.++.....
T Consensus 153 af~~~~~~~~~~~~l~-r~~~~~~~~ 177 (250)
T COG2966 153 AFFAGLLGFLLRQYLS-RKGNPDFFF 177 (250)
T ss_pred HHHHHHHHHHHHHHHH-HhhchhhHH
Confidence 3344444444444545 766655443
No 329
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=26.86 E-value=1.6e+02 Score=17.96 Aligned_cols=17 Identities=12% Similarity=0.057 Sum_probs=11.4
Q ss_pred HHHhHhhhhhhccHHHH
Q 036040 110 LLLDVSYFSQNLFQKEI 126 (338)
Q Consensus 110 ~~~~~~~~~~~~~~~~~ 126 (338)
.....+.|++..|+-.+
T Consensus 33 ~v~~Vg~YGF~VWm~Q~ 49 (56)
T PF06796_consen 33 AVAFVGGYGFIVWMYQI 49 (56)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34567788888876543
No 330
>PRK11469 hypothetical protein; Provisional
Probab=26.83 E-value=3e+02 Score=21.66 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=22.4
Q ss_pred HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 036040 152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVF 190 (338)
Q Consensus 152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~ 190 (338)
......+....|..++.++.+++|||.-++-+.++..++
T Consensus 140 ig~~s~~~~~~G~~lG~~~g~~~g~~a~~lgG~iLI~iG 178 (188)
T PRK11469 140 IGCATLIMSTLGMMVGRFIGSIIGKKAEILGGLVLIGIG 178 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555556666677778776665554444443
No 331
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=26.69 E-value=4.4e+02 Score=23.08 Aligned_cols=27 Identities=11% Similarity=0.194 Sum_probs=12.9
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHhh
Q 036040 169 ILIDIIGRVTIQLIGFFFMTVFMLALAIP 197 (338)
Q Consensus 169 ~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 197 (338)
++-+|+...+. +|.+++..+..++...
T Consensus 126 fL~~ry~~~~~--~gv~i~i~Gv~lv~~s 152 (334)
T PF06027_consen 126 FLKRRYSWFHI--LGVLICIAGVVLVVVS 152 (334)
T ss_pred HHHhhhhHHHH--HHHHHHHhhhhheeee
Confidence 34455555444 4544544444444443
No 332
>PF11511 RhodobacterPufX: Intrinsic membrane protein PufX; InterPro: IPR020169 PufX organises RC-LH1, the photosynthesis reaction centre-light harvesting complex 1 core complex of Rhodobacter sphaeroides []. It also facilitates the exchange of quinol for quinone between the reaction centre and cytochrome bc(1) complexes. In organic solvent, PufX contains two hydrophobic helices which are flanked by unstructured regions and connected by a helical bend [].; PDB: 2DW3_A 2ITA_A 2NRG_A.
Probab=25.73 E-value=82 Score=19.85 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=15.0
Q ss_pred cchHHHHHHHHHHHHHhHhhee-ecccCCCCC
Q 036040 284 IGIKNTLFLLAAVNVLGLLFTF-LVPEPNGRS 314 (338)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~ 314 (338)
.||..++++...+.++++-++- .+||..+..
T Consensus 28 ag~Aav~~~~~~~~l~~~~~iG~~LPe~s~~a 59 (67)
T PF11511_consen 28 AGYAAVFFLGLWFLLVALYFIGLLLPERSRQA 59 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSTTTCSS-
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCchhcccC
Confidence 3555555444444433333333 778865443
No 333
>PRK02237 hypothetical protein; Provisional
Probab=25.56 E-value=1e+02 Score=21.63 Aligned_cols=43 Identities=14% Similarity=0.010 Sum_probs=29.0
Q ss_pred HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 036040 152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLAL 194 (338)
Q Consensus 152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 194 (338)
..+...-..++.++++++..|+..+-+.=.++..++.++..++
T Consensus 61 vYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI 103 (109)
T PRK02237 61 VYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVI 103 (109)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHh
Confidence 4455555566788899999999876666566665555554443
No 334
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=25.43 E-value=3.3e+02 Score=21.25 Aligned_cols=37 Identities=3% Similarity=-0.083 Sum_probs=24.5
Q ss_pred HhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 036040 157 LCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLA 193 (338)
Q Consensus 157 ~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 193 (338)
.+..++++.++.+..+|..+|.-++.+.+..++....
T Consensus 107 ~~~~l~~~~~~~~~~~~~~~R~~~i~ag~~v~l~~~~ 143 (194)
T PF07698_consen 107 FLYSLVSGIVAIFSVRRIRSRSDIIKAGLLVGLVNAL 143 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445567777888888988887776665544444443
No 335
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=25.25 E-value=70 Score=18.98 Aligned_cols=23 Identities=4% Similarity=-0.128 Sum_probs=14.1
Q ss_pred CchhhhhhhHHHHHHHHHHHhcc
Q 036040 1 WRIVLMFGALPIAFTYYWRMKMP 23 (338)
Q Consensus 1 WR~~f~~~~i~~~i~~~~~~~lp 23 (338)
|.++|++..+.+++-++....++
T Consensus 24 w~~~f~~tivfa~~Y~~~yp~~~ 46 (51)
T PF14715_consen 24 WLWLFYGTIVFAVGYLVLYPGLG 46 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC
Confidence 56677777777666555544443
No 336
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=25.11 E-value=69 Score=27.69 Aligned_cols=119 Identities=15% Similarity=0.207 Sum_probs=51.9
Q ss_pred hccchhHHHHHHHHHhh--chHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecc
Q 036040 158 CGLIPGYWITVILIDII--GRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAE 235 (338)
Q Consensus 158 ~~~~~~~~~~g~l~d~~--grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 235 (338)
+-.++..+...++.||+ |.|..+.+ ++.+.++.+.++.. .....++.+.....+.|.+-+.+.-.+.
T Consensus 73 lPsL~iKl~~Pff~~rfpf~~Ri~~~v--~~sa~s~~lVafs~---------s~~~sL~GV~~aSissGlGEiTFL~lss 141 (409)
T KOG3880|consen 73 LPSLAIKLTAPFFIHRFPFGFRIALVV--LLSALSFFLVAFSN---------SVPMSLLGVVFASISSGLGEITFLALSS 141 (409)
T ss_pred hHHHHHHHhchhhhhhcccchHHHHHH--HHHhcceEEEEecc---------chhHHHhhhhhhhhcCCcceeehhhhhc
Confidence 33344455667778874 66654332 22233333333222 1222223333333344444455544555
Q ss_pred cCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHh
Q 036040 236 IFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLL 302 (338)
Q Consensus 236 ~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (338)
.+|+..-+ ++.. ....++.+|..-...+.+ ..+...+...++...+.++...
T Consensus 142 ~Y~~~~i~---~WSS-GTGgAGliGa~SYa~lT~-----------~~~~spk~Tlli~l~lP~lfa~ 193 (409)
T KOG3880|consen 142 RYPSIVIA---GWSS-GTGGAGLIGASSYAFLTS-----------WANLSPKSTLLIMLFLPALFAF 193 (409)
T ss_pred cCCCceec---cccC-CCCcchhhhhhHHHHHhh-----------hcCCChhhHHHHHHHHHHHHHH
Confidence 55543221 2222 222344555555555542 0244566666666555443333
No 337
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=24.95 E-value=93 Score=21.34 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=14.0
Q ss_pred CchhhhhhhHHHHHHHHH--H-HhccCCch
Q 036040 1 WRIVLMFGALPIAFTYYW--R-MKMPETPH 27 (338)
Q Consensus 1 WR~~f~~~~i~~~i~~~~--~-~~lpEsp~ 27 (338)
+||+++++....++.+++ + |.+||+..
T Consensus 2 ~kw~l~Lc~~SF~~G~lft~R~W~~pe~~~ 31 (95)
T PF13334_consen 2 RKWVLLLCIASFCAGMLFTNRMWTVPESKE 31 (95)
T ss_pred chHHHHHHHHHHHHHHHHhcccccCCcccc
Confidence 366666655544443333 2 33777643
No 338
>COG2119 Predicted membrane protein [Function unknown]
Probab=24.75 E-value=2.1e+02 Score=22.39 Aligned_cols=32 Identities=9% Similarity=0.120 Sum_probs=24.5
Q ss_pred HHHHHhccchhHHHHHHHHHhhchHHHHHHHH
Q 036040 153 TLVALCGLIPGYWITVILIDIIGRVTIQLIGF 184 (338)
Q Consensus 153 ~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~ 184 (338)
+....++..++.+.+.++++|+..|.+..++.
T Consensus 140 ~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aa 171 (190)
T COG2119 140 TLGMILASVLAVLLGKLIAGKLPERLLRFIAA 171 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 33445666777888999999999998887773
No 339
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=24.42 E-value=96 Score=26.07 Aligned_cols=46 Identities=22% Similarity=0.185 Sum_probs=25.4
Q ss_pred cHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHH---------HHHHHhhchHHH
Q 036040 122 FQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWIT---------VILIDIIGRVTI 179 (338)
Q Consensus 122 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------g~l~d~~grr~~ 179 (338)
|+-.++++.|.+|... ...+.+..+...+..++. .+-.||+|||..
T Consensus 39 Ylllfltqiglsp~~~------------AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~ 93 (412)
T KOG4830|consen 39 YLLLFLTQIGLSPSSR------------AMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMS 93 (412)
T ss_pred HHHHHHHHhcCCcchh------------HHHHHhhHHHHHHhcccccccccccccHHHhhhhcceee
Confidence 3344566778887652 123333344444443333 456789999864
No 340
>COG3462 Predicted membrane protein [Function unknown]
Probab=24.33 E-value=1.2e+02 Score=21.30 Aligned_cols=12 Identities=17% Similarity=0.188 Sum_probs=6.1
Q ss_pred hhHHHHHHHhhh
Q 036040 37 GKASEDFSKLLV 48 (338)
Q Consensus 37 ~~~~~~~~~~~~ 48 (338)
+.|.+.+++.+.
T Consensus 88 sRA~eIlkER~A 99 (117)
T COG3462 88 SRAEEILKERYA 99 (117)
T ss_pred cHHHHHHHHHHh
Confidence 445555555443
No 341
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=23.90 E-value=1.6e+02 Score=17.11 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=13.7
Q ss_pred ccchhHHHHHHHHHhhch
Q 036040 159 GLIPGYWITVILIDIIGR 176 (338)
Q Consensus 159 ~~~~~~~~~g~l~d~~gr 176 (338)
.+++|+++++++...++.
T Consensus 3 ~GiiGa~vGg~l~~~lg~ 20 (48)
T PF04226_consen 3 LGIIGAFVGGWLFGLLGI 20 (48)
T ss_pred eehHHHHHHHHHHHHhcc
Confidence 456788888888888776
No 342
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=23.58 E-value=96 Score=21.71 Aligned_cols=43 Identities=14% Similarity=-0.082 Sum_probs=29.4
Q ss_pred HHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 036040 152 QTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLAL 194 (338)
Q Consensus 152 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 194 (338)
..+...-..++.++++++..|+..+-+.=.++..++.++..++
T Consensus 59 vYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI 101 (107)
T PF02694_consen 59 VYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAII 101 (107)
T ss_pred HHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHhe
Confidence 4555556667788899999999887666666665555544433
No 343
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=22.78 E-value=3.7e+02 Score=20.94 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=7.9
Q ss_pred CCCchhHHHHHhhhh
Q 036040 52 NNSNNIIEQVQAVDQ 66 (338)
Q Consensus 52 ~~~~~~~~~~~~~~~ 66 (338)
-+.++..+++++++.
T Consensus 82 ~~~~ea~~~L~~I~~ 96 (193)
T PF06738_consen 82 LSLEEAIERLDEIDR 96 (193)
T ss_pred CCHHHHHHHHHHHhh
Confidence 344455555555555
No 344
>PF11283 DUF3084: Protein of unknown function (DUF3084); InterPro: IPR021435 This bacterial family of proteins has no known function.
Probab=22.74 E-value=1.3e+02 Score=19.78 Aligned_cols=16 Identities=13% Similarity=0.185 Sum_probs=8.0
Q ss_pred HHHHHHhhchHHHHHH
Q 036040 167 TVILIDIIGRVTIQLI 182 (338)
Q Consensus 167 ~g~l~d~~grr~~~~~ 182 (338)
+-.+..|.|+|++-++
T Consensus 20 GD~iG~kvGKkrlslF 35 (79)
T PF11283_consen 20 GDRIGSKVGKKRLSLF 35 (79)
T ss_pred HHHHHHHHhHHHhhhh
Confidence 3444445566665443
No 345
>PRK11588 hypothetical protein; Provisional
Probab=22.07 E-value=3.1e+02 Score=25.53 Aligned_cols=15 Identities=27% Similarity=0.226 Sum_probs=9.3
Q ss_pred HHHHHhhchHHHHHH
Q 036040 168 VILIDIIGRVTIQLI 182 (338)
Q Consensus 168 g~l~d~~grr~~~~~ 182 (338)
+.+.+|++.|..+++
T Consensus 137 ~~l~~k~~~~~~llI 151 (506)
T PRK11588 137 LALIRKTRGNEILFI 151 (506)
T ss_pred HHHHHHhCCCcEEeH
Confidence 566778876644443
No 346
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=21.29 E-value=79 Score=21.72 Aligned_cols=22 Identities=18% Similarity=0.081 Sum_probs=13.4
Q ss_pred HHhccchhHHHHHHHHHhhchH
Q 036040 156 ALCGLIPGYWITVILIDIIGRV 177 (338)
Q Consensus 156 ~~~~~~~~~~~~g~l~d~~grr 177 (338)
..+..++.+++.|.+.||..||
T Consensus 84 ~~~~~l~va~v~g~l~~~~r~~ 105 (105)
T PF13493_consen 84 TFAVFLVVALVTGYLADRYRRQ 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHhhC
Confidence 3334445666889999999886
No 347
>PF08611 DUF1774: Fungal protein of unknown function (DUF1774); InterPro: IPR013920 This is a fungal protein of unknown function.
Probab=21.15 E-value=2.6e+02 Score=19.28 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040 245 CHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF 305 (338)
Q Consensus 245 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (338)
++|+....-..+-.++.+....+ ...|-.+|.+.+++.+..+....
T Consensus 26 ~~GfslS~L~~slgv~Q~~~kvi---------------alQWIFAFvI~avlfv~sl~vav 71 (97)
T PF08611_consen 26 AMGFSLSYLTASLGVGQFFIKVI---------------ALQWIFAFVIAAVLFVLSLVVAV 71 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444555555554433 24566677777776666555443
No 348
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=20.38 E-value=3.6e+02 Score=24.57 Aligned_cols=32 Identities=19% Similarity=0.622 Sum_probs=15.1
Q ss_pred HHHHHHHhhchHHH-----HHHHHHHHHHHHHHHHhh
Q 036040 166 ITVILIDIIGRVTI-----QLIGFFFMTVFMLALAIP 197 (338)
Q Consensus 166 ~~g~l~d~~grr~~-----~~~~~~~~~~~~~~~~~~ 197 (338)
++-++.+.+.++++ +++|+.++..-++++++.
T Consensus 310 ~~fflfE~~~~~~iHpiQY~LVGlAl~lFYlLLLSlS 346 (430)
T PF06123_consen 310 LAFFLFELLSKLRIHPIQYLLVGLALVLFYLLLLSLS 346 (430)
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666655543 344444444444444443
No 349
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=20.21 E-value=6.9e+02 Score=23.17 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=14.1
Q ss_pred HhhchHHHHHHHHHHHHHHHH
Q 036040 172 DIIGRVTIQLIGFFFMTVFML 192 (338)
Q Consensus 172 d~~grr~~~~~~~~~~~~~~~ 192 (338)
.|.|.|+++.++..++.+..+
T Consensus 343 TKVgSRrvvQ~aa~fmI~~~i 363 (510)
T KOG1292|consen 343 TKVGSRRVVQIAAGFMIFFGI 363 (510)
T ss_pred eeeeeeeehhhhHHHHHHHHH
Confidence 478888888887555554443
No 350
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion]
Probab=20.12 E-value=6.1e+02 Score=23.20 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=12.0
Q ss_pred eeeecccCCccchhhhHHHHH
Q 036040 230 FIVPAEIFPARFRSTCHGISA 250 (338)
Q Consensus 230 ~~~~~e~~p~~~R~~~~~~~~ 250 (338)
-.++.|...+ ||.+.|+..
T Consensus 168 lmwLgE~Itk--~GIGnGiSL 186 (436)
T COG0201 168 LMWLGEQITK--RGIGNGISL 186 (436)
T ss_pred HHHHHHHHhh--cCcccchHH
Confidence 3568999876 555555543
No 351
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=20.08 E-value=3.1e+02 Score=19.05 Aligned_cols=12 Identities=8% Similarity=-0.125 Sum_probs=7.0
Q ss_pred HhhchHHHHHHH
Q 036040 172 DIIGRVTIQLIG 183 (338)
Q Consensus 172 d~~grr~~~~~~ 183 (338)
+|..+|+..-+.
T Consensus 84 er~~~~~~~a~~ 95 (113)
T PF13536_consen 84 ERLSPRRWLAIL 95 (113)
T ss_pred CCCCHHHHHHHH
Confidence 466777665443
Done!