Query 036040
Match_columns 338
No_of_seqs 346 out of 2152
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 14:52:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036040.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036040hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 9.1E-30 3.1E-34 231.0 14.6 282 1-325 199-481 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.8 2.5E-19 8.5E-24 160.4 9.2 175 103-308 255-434 (451)
3 1pw4_A Glycerol-3-phosphate tr 99.7 6.1E-17 2.1E-21 144.8 10.2 186 97-312 25-212 (451)
4 3o7q_A L-fucose-proton symport 99.7 2.2E-16 7.7E-21 140.7 12.6 162 106-303 264-428 (438)
5 3o7q_A L-fucose-proton symport 99.7 1.7E-15 5.7E-20 135.0 15.6 152 100-268 26-177 (438)
6 2cfq_A Lactose permease; trans 99.6 6E-16 2E-20 137.2 10.0 142 151-313 263-406 (417)
7 4aps_A DI-OR tripeptide H+ sym 99.6 1.1E-15 3.8E-20 138.3 9.6 171 102-305 15-194 (491)
8 2gfp_A EMRD, multidrug resista 99.6 1.7E-15 5.8E-20 132.3 7.1 176 105-313 5-181 (375)
9 4aps_A DI-OR tripeptide H+ sym 99.5 4.3E-14 1.5E-18 127.8 12.6 178 109-312 292-477 (491)
10 4gc0_A D-xylose-proton symport 99.5 6E-13 2.1E-17 120.3 18.4 158 149-311 57-224 (491)
11 2xut_A Proton/peptide symporte 99.5 1.1E-13 3.8E-18 126.2 13.1 169 105-305 17-196 (524)
12 2gfp_A EMRD, multidrug resista 99.3 4.2E-14 1.4E-18 123.4 -2.5 159 110-301 209-369 (375)
13 2xut_A Proton/peptide symporte 99.1 1E-10 3.5E-15 106.6 5.9 133 178-315 374-511 (524)
14 2cfq_A Lactose permease; trans 99.0 5.4E-11 1.9E-15 105.3 -0.9 166 110-308 17-188 (417)
15 2g9p_A Antimicrobial peptide l 66.3 4.3 0.00015 18.4 1.8 14 166-179 2-15 (26)
16 3arc_T Photosystem II reaction 50.3 19 0.00065 18.1 2.7 15 14-28 15-29 (32)
17 2dw3_A Intrinsic membrane prot 33.2 36 0.0012 21.1 2.6 31 284-314 30-61 (77)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.96 E-value=9.1e-30 Score=230.99 Aligned_cols=282 Identities=19% Similarity=0.275 Sum_probs=191.4
Q ss_pred CchhhhhhhHHHHHHHHHHHhccCCchhhhhhcCChhhHHHHHHHhhhhcCCCCchhHHHHHhhhhccccccCCCCCCCc
Q 036040 1 WRIVLMFGALPIAFTYYWRMKMPETPHYTALGAMNAGKASEDFSKLLVMNNNNSNNIIEQVQAVDQRNDVVCGAADHDDD 80 (338)
Q Consensus 1 WR~~f~~~~i~~~i~~~~~~~lpEsp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (338)
||+++.+..+++++.++.++++||||||| ..+++.+++.+.+++..+.+.. +++..+.++. .+ + .
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~peSp~~L-~~~~~~~~a~~~l~~~~~~~~~-----~~~~~~~~~~---~~----~--~ 263 (491)
T 4gc0_A 199 WRYMFASECIPALLFLMLLYTVPESPRWL-MSRGKQEQAEGILRKIMGNTLA-----TQAVQEIKHS---LD----H--G 263 (491)
T ss_dssp HHHHHHTTHHHHHHHHHHGGGSCCCHHHH-HHTTCHHHHHHHHHHHHHHHHH-----HHHHHHHHHH---HH----H--H
T ss_pred hHHHhhhhhhhhhhhhhhhhcCCCChHHH-HHcCchhHHHHhHHHhcCCchh-----HHHHHHHHHH---HH----h--h
Confidence 78888889999999999999999999998 7777788888887776654321 1111111110 00 0 0
Q ss_pred ccccchhhchhhhhhhhhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhcc
Q 036040 81 DKKGISFGLFSKMFARRHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGL 160 (338)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (338)
++.. ......+..+..+......+.....++....|.|.+.+..+.+... .........+..
T Consensus 264 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~ 325 (491)
T 4gc0_A 264 RKTG------GRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDI------------ALLQTIIVGVIN 325 (491)
T ss_dssp HHHT------THHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHH------------HHHHHHHHHHHH
T ss_pred hhhh------hHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccc------------hhhHHHHHHHHH
Confidence 0000 0111111122344445555556667777778888888776554422 333556667778
Q ss_pred chhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCcc
Q 036040 161 IPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPAR 240 (338)
Q Consensus 161 ~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 240 (338)
+++.++++++.||+|||+.++.+...+.++++.++..... ............+...++..+..++.+.+.+|++|++
T Consensus 326 ~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~ 402 (491)
T 4gc0_A 326 LTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT---QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNA 402 (491)
T ss_dssp HHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTT
T ss_pred HHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHh
Confidence 8899999999999999999999988888877766654421 1122233333344444556667778889999999999
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCCCChhhhh
Q 036040 241 FRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNGRSLEEIS 319 (338)
Q Consensus 241 ~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~ 319 (338)
.|++++|+.++.+++++++++.+.+.+.+.... ....++...|++++++++++.++.+ ++||||++++||++
T Consensus 403 ~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~-------~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~ 475 (491)
T 4gc0_A 403 IRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL-------VAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELE 475 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH-------HHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHH
Confidence 999999999999999999999998877421000 0123455678888888888888877 89999999999998
Q ss_pred hhhhhh
Q 036040 320 GEIEEC 325 (338)
Q Consensus 320 ~~~~~~ 325 (338)
+..+++
T Consensus 476 ~~f~~~ 481 (491)
T 4gc0_A 476 ALWEPE 481 (491)
T ss_dssp GGTC--
T ss_pred HHhCCC
Confidence 876544
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.78 E-value=2.5e-19 Score=160.41 Aligned_cols=175 Identities=11% Similarity=0.131 Sum_probs=125.0
Q ss_pred HHHHHHHHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhh--chHHH
Q 036040 103 LGTASTWLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDII--GRVTI 179 (338)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~ 179 (338)
+...+..++....+++...+.|.++++ .|+++.+ .........++.+++.+++|++.||+ |||+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------------~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~ 322 (451)
T 1pw4_A 255 WYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK------------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA 322 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 444455556666777788889988877 5665533 44466777888899999999999999 99998
Q ss_pred HHHHHHHHH-HHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHH-HH
Q 036040 180 QLIGFFFMT-VFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKA-GA 257 (338)
Q Consensus 180 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~-g~ 257 (338)
+..+..+.. ++.+++.+.. . ..........+..+++..+..+..+.+..|.+|++.|+++.|+.+...++ |.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~ 396 (451)
T 1pw4_A 323 TGVFFMTLVTIATIVYWMNP-----A-GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS 396 (451)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----T-TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc-----c-cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHH
Confidence 887765554 3333332221 1 12222333333344444444555667899999999999999999999999 99
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecc
Q 036040 258 IIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVP 308 (338)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (338)
.++|.+.+.+. +..|+...|++.+++.+++.++.++.+
T Consensus 397 ~~~~~~~g~l~-------------~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 397 VAASAIVGYTV-------------DFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHH-------------HSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------------HhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998 567889999888888887777666443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.69 E-value=6.1e-17 Score=144.84 Aligned_cols=186 Identities=12% Similarity=0.008 Sum_probs=140.6
Q ss_pred hhHHHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhch
Q 036040 97 RHGLHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGR 176 (338)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr 176 (338)
..++.++...+..+......+....+.|.+.+++ .++.+ .........++..++.+++|+++||+||
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~------------~g~~~~~~~~~~~~~~~~~G~l~dr~g~ 91 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGD------------LGFALSGISIAYGFSKFIMGSVSDRSNP 91 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSC------------HHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhH------------HHHHHHHHHHHHHHHHHhHHHHHHhcCc
Confidence 3344556666666777777777778888887777 66655 3446777888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHH
Q 036040 177 VTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAG 256 (338)
Q Consensus 177 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g 256 (338)
|++++++.++.+++.++.++.... ......+++..++.+.+.....+...++++|.+|++.|++++|+......+|
T Consensus 92 r~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g 167 (451)
T 1pw4_A 92 RVFLPAGLILAAAVMLFMGFVPWA----TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVG 167 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHH----HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhc----cccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHH
Confidence 999999999988888887762110 0113344444555555555556777789999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCCcc-hHHHHHHHHHHHHHhHhhee-ecccCCC
Q 036040 257 AIIGAFGFLYAAQDQDKSKADPGYPAGIG-IKNTLFLLAAVNVLGLLFTF-LVPEPNG 312 (338)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~e~~~ 312 (338)
.+++|.+.+.+. +..+ |+..|++.++++++..++.+ ++||++.
T Consensus 168 ~~~g~~~~~~l~-------------~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 168 GGIPPLLFLLGM-------------AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HTSHHHHHHHHH-------------HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHHHHHHHHHHH-------------HHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 999999999876 4567 99999988888777666554 6676543
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.68 E-value=2.2e-16 Score=140.68 Aligned_cols=162 Identities=9% Similarity=-0.050 Sum_probs=113.9
Q ss_pred HHHHHHHhHhhhhhhccHHHH-HHHc-cCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHH
Q 036040 106 ASTWLLLDVSYFSQNLFQKEI-FTAV-GWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIG 183 (338)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~ 183 (338)
.+..++.....++...+.|.+ +++. |+++.+ .........++.+++.+++|+++||+|||+++..+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~ 331 (438)
T 3o7q_A 264 VLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGF------------AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAY 331 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCcchhH------------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 334444555666777888888 7774 665533 44566677888889999999999999999999988
Q ss_pred HHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHH
Q 036040 184 FFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFG 263 (338)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~ 263 (338)
.++..++.+++.+... ...... .++.+++.....+..+++..|.+|++ |+++.++.. .+.+|+.++|.+
T Consensus 332 ~~~~~~~~~~~~~~~~--------~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~ 400 (438)
T 3o7q_A 332 ALIAMALCLISAFAGG--------HVGLIA-LTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPV 400 (438)
T ss_dssp HHHHHHHHHHHHHCCH--------HHHHHH-HHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--------cHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHH
Confidence 8777776665554431 122222 23334444555677888889999977 888888877 678999999999
Q ss_pred HHHhhhccccCCCCCCCCCCcc-hHHHHHHHHHHHHHhHhh
Q 036040 264 FLYAAQDQDKSKADPGYPAGIG-IKNTLFLLAAVNVLGLLF 303 (338)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 303 (338)
.+.+. +..| ++..|++.+++.++..++
T Consensus 401 ~g~l~-------------~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 401 MGFVS-------------DAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HHHHH-------------HHHTSSGGGGHHHHHHHHHHHHH
T ss_pred HHHHH-------------HHhcchHHHHHHHHHHHHHHHHH
Confidence 99998 4556 777777665555444443
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.66 E-value=1.7e-15 Score=135.04 Aligned_cols=152 Identities=10% Similarity=-0.058 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHH
Q 036040 100 LHLLGTASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTI 179 (338)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~ 179 (338)
+.++.+.+..+......+......|.+.+++|.++.+ .........++..++.+++|+++||+|||+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------------~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~ 93 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQ------------AGLIQSAFYFGYFIIPIPAGILMKKLSYKAG 93 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHH------------HHHHHHHHHHHHHTTHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHhHHHHHHHhcchHH
Confidence 3445555666666677777888899998998888755 4457778888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHH
Q 036040 180 QLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAII 259 (338)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~ 259 (338)
++++.++.+++.++...... .+....+++..++.+.+.....+...++++|.+|++.|++++++.+....+|..+
T Consensus 94 l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 168 (438)
T 3o7q_A 94 IITGLFLYALGAALFWPAAE-----IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAII 168 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccc-----cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH
Confidence 99999888888877732210 0223444555555565555666677889999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 036040 260 GAFGFLYAA 268 (338)
Q Consensus 260 ~~~~~~~~~ 268 (338)
++.+.+.+.
T Consensus 169 g~~~~~~l~ 177 (438)
T 3o7q_A 169 AVVFGQSLI 177 (438)
T ss_dssp HHHHTTHHH
T ss_pred HHHHHHHHH
Confidence 999999886
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.64 E-value=6e-16 Score=137.20 Aligned_cols=142 Identities=15% Similarity=0.083 Sum_probs=97.5
Q ss_pred HHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceee
Q 036040 151 AQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTF 230 (338)
Q Consensus 151 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (338)
....+..++.+++.++.++++||+|||+++..+.++.++..+++.+.. +... +.....+.++......+..+
T Consensus 263 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~l~~~~~~~~~~~~~ 334 (417)
T 2cfq_A 263 YVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT-------SALE-VVILKTLHMFEVPFLLVGCF 334 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC-------SHHH-HHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc-------cHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 345555667778889999999999999998887766666544443221 1122 22211111211112223346
Q ss_pred eeecccCCccchhhhHHHH-HHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecc
Q 036040 231 IVPAEIFPARFRSTCHGIS-AAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVP 308 (338)
Q Consensus 231 ~~~~e~~p~~~R~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 308 (338)
.+++|.+|++.|+++.++. +....+|+.++|.+.+.+. +..|+...|.+.+++++++.+..+ +.|
T Consensus 335 ~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~-------------~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY-------------ESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHH-------------HHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH-------------HhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7889999999999999995 7788899999999999887 456788888888888888777655 566
Q ss_pred cCCCC
Q 036040 309 EPNGR 313 (338)
Q Consensus 309 e~~~~ 313 (338)
|+++.
T Consensus 402 ~~~~~ 406 (417)
T 2cfq_A 402 GPGPL 406 (417)
T ss_dssp CSCTT
T ss_pred CCCch
Confidence 65443
No 7
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.61 E-value=1.1e-15 Score=138.29 Aligned_cols=171 Identities=15% Similarity=0.077 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHhHhhhhhhccHHHHHHH------ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHh-h
Q 036040 102 LLGTASTWLLLDVSYFSQNLFQKEIFTA------VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDI-I 174 (338)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~ 174 (338)
.+...+..++....+|+...+.+.++++ +|+++.+ .........++..++.+++|+++|| +
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------------~~~~~~~~~~~~~~~~~~~g~l~dr~~ 82 (491)
T 4aps_A 15 LSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRAT------------AASIMAIYASMVYLSGTIGGFVADRII 82 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3445556666777788888888888776 5665543 4557777888889999999999999 8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccc--hhhhHHHHHHH
Q 036040 175 GRVTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARF--RSTCHGISAAA 252 (338)
Q Consensus 175 grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--R~~~~~~~~~~ 252 (338)
|||+++..+.++.+++.++..+.. + ...+.+..++.+.+.....+...++++|.+|++. |+.+.++.+..
T Consensus 83 g~r~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 154 (491)
T 4aps_A 83 GARPAVFWGGVLIMLGHIVLALPF-------G-ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFG 154 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCC-------S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHhh-------h-HHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHH
Confidence 999999999888888877776543 2 3334444445555555556777889999999988 77788888899
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040 253 GKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF 305 (338)
Q Consensus 253 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (338)
..+|..++|.+.+.+. +..||+..|++.++..+++.+..+
T Consensus 155 ~~~g~~~~~~~~~~l~-------------~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 155 INLGAFIAPLIVGAAQ-------------EAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHHHHHHHHHHH-------------HHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------------hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987 567999999988777766666554
No 8
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.58 E-value=1.7e-15 Score=132.27 Aligned_cols=176 Identities=7% Similarity=-0.055 Sum_probs=135.0
Q ss_pred HHHHHHHHhHhhhhhhccHHHHHHHccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHH
Q 036040 105 TASTWLLLDVSYFSQNLFQKEIFTAVGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGF 184 (338)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~ 184 (338)
..+..+.............|.+.+++|.++.+ .........++..++.++.|+++||+|||+.++.+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 72 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMARDLNVREGA------------VQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGM 72 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHH------------HHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 33444455555555666778887887877754 444677778888899999999999999999999998
Q ss_pred HHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHH
Q 036040 185 FFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGF 264 (338)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~ 264 (338)
++.+++.++..+... ...+....++.+.+.....+....++.|.+|++.|++++++.+....+|..++|.+.
T Consensus 73 ~~~~~~~~~~~~~~~--------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 144 (375)
T 2gfp_A 73 SIFMLATLVAVTTSS--------LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIG 144 (375)
T ss_dssp HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 888888777766542 333444445555555555667778899999999999999999999999999999999
Q ss_pred HHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCCC
Q 036040 265 LYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNGR 313 (338)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~ 313 (338)
+.+. +..+|+..|.+.++..++..+... ++||++..
T Consensus 145 ~~l~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 145 GLLD-------------TMWNWRACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHSS-------------CHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHH-------------HhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 9986 567999999988888877777555 77876543
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.54 E-value=4.3e-14 Score=127.84 Aligned_cols=178 Identities=11% Similarity=-0.021 Sum_probs=108.5
Q ss_pred HHHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHH-----H
Q 036040 109 WLLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQL-----I 182 (338)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~-----~ 182 (338)
.+.....+.....+.|.+.++ .+.+....+ .......++.+++.++.+++.||+|||+... .
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~ 359 (491)
T 4aps_A 292 AVLFWAIEEQGSVVLATFAAERVDSSWFPVS------------WFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAV 359 (491)
T ss_dssp HHHHHHHHGGGGTHHHHHHHHSCCCSSSCSG------------GGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHhccCccCHH------------HHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHH
Confidence 334444555566677777776 344432211 1444556666677888999999999986544 4
Q ss_pred HHHHHHHHHHHHHhhhhhcc-cccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHH
Q 036040 183 GFFFMTVFMLALAIPYHHWI-QKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGA 261 (338)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~ 261 (338)
+.++++++.+++........ .............++.+.+.....+..+.++.|.+|++.|++++|+.+....+|..+++
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~ 439 (491)
T 4aps_A 360 GLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNA 439 (491)
T ss_dssp HHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444444444433221111 11122333333444444444455667788999999999999999999999999999999
Q ss_pred HHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee-ecccCCC
Q 036040 262 FGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF-LVPEPNG 312 (338)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~ 312 (338)
.+.+.+. ..++...|.+.+++++++.+..+ +.++.++
T Consensus 440 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 440 QLVTLYN--------------AKSEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp HHGGGGG--------------GSSTTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHHHh--------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998885 33556677777777777666655 5555443
No 10
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.52 E-value=6e-13 Score=120.30 Aligned_cols=158 Identities=17% Similarity=0.071 Sum_probs=116.7
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhccc----------ccchhhHHHHHHHHH
Q 036040 149 ARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMTVFMLALAIPYHHWIQ----------KHNSTGFVVMYALTF 218 (338)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 218 (338)
..+..+...++.++|++++|+++||+|||+.++++.++..++.++.++....... .......+++..++.
T Consensus 57 ~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~ 136 (491)
T 4gc0_A 57 LGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIG 136 (491)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHH
Confidence 3456667788899999999999999999999999999888888877753311100 113355566677777
Q ss_pred HhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHH
Q 036040 219 FFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNV 298 (338)
Q Consensus 219 ~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (338)
+++.++..+...++++|..|++.|+...++.+.....|..+++.+........+ .......+|+..+.+..+..+
T Consensus 137 G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 211 (491)
T 4gc0_A 137 GIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGD-----ASWLNTDGWRYMFASECIPAL 211 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-----TTTTTTTHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccc-----cccccchhhHHHhhhhhhhhh
Confidence 777777778888999999999999999999998888888888877766643111 111134567877777777777
Q ss_pred HhHhheeecccCC
Q 036040 299 LGLLFTFLVPEPN 311 (338)
Q Consensus 299 ~~~~~~~~~~e~~ 311 (338)
+..+..+++||+.
T Consensus 212 ~~~~~~~~~peSp 224 (491)
T 4gc0_A 212 LFLMLLYTVPESP 224 (491)
T ss_dssp HHHHHGGGSCCCH
T ss_pred hhhhhhhcCCCCh
Confidence 7766666889873
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.51 E-value=1.1e-13 Score=126.22 Aligned_cols=169 Identities=11% Similarity=-0.006 Sum_probs=127.4
Q ss_pred HHHHHHHHhHhhhhhhccHHHHHHH-cc------CCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhh-ch
Q 036040 105 TASTWLLLDVSYFSQNLFQKEIFTA-VG------WLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDII-GR 176 (338)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-gr 176 (338)
..+..++....+|+...+++.++.+ +| +++.+ .........++.+++.+++|+++||+ ||
T Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~------------~g~~~~~~~~~~~~~~~~~G~l~dr~~g~ 84 (524)
T 2xut_A 17 IIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAV------------AKDVFHSFVIGVYFFPLLGGWIADRFFGK 84 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTT------------HHHHHHHHHHHHHHTHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4445556666777777888887765 67 66655 44466777888888999999999999 99
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHH---HHHHH
Q 036040 177 VTIQLIGFFFMTVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGI---SAAAG 253 (338)
Q Consensus 177 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~---~~~~~ 253 (338)
|+++.++.++.+++.++..+.. .....+.+..++.+.+.....+...++++|.+|++.|+++.+. .+...
T Consensus 85 r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 157 (524)
T 2xut_A 85 YNTILWLSLIYCVGHAFLAIFE-------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTI 157 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS-------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHH
Confidence 9999999888877777666543 0233444445555555566667788899999999999876666 88889
Q ss_pred HHHHHHHHHHHHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhhee
Q 036040 254 KAGAIIGAFGFLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTF 305 (338)
Q Consensus 254 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (338)
.+|..++|.+.+.+. +..+|+..|++.+++.+++.+..+
T Consensus 158 ~~g~~~g~~~~~~l~-------------~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 158 NFGSFFASLSMPLLL-------------KNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHHHTSTHHH-------------HTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-------------ccccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887 467899999888877766655543
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.33 E-value=4.2e-14 Score=123.42 Aligned_cols=159 Identities=11% Similarity=-0.013 Sum_probs=91.8
Q ss_pred HHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHH-H
Q 036040 110 LLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFF-M 187 (338)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~-~ 187 (338)
++.....+....+.|.++++ .|+++. ..........++.+++.++.+++.||++++. ..+... .
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~g~~~~------------~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~ 274 (375)
T 2gfp_A 209 IGGLAGIAAFEACSGVLMGAVLGLSSM------------TVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCL 274 (375)
T ss_dssp HHHHHHHHHHHHHCSCSSHHHHHHHHH------------HHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 33444455555555555444 343332 2445666677888888888999999988732 222221 1
Q ss_pred HHHHHHHHhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 036040 188 TVFMLALAIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAGAIIGAFGFLYA 267 (338)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g~~~~~~~~~~~ 267 (338)
..+...+..... ............++.+++.....+....+..|.+| +.|+++.|+.+....+|..++|.+.+.+
T Consensus 275 ~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l 349 (375)
T 2gfp_A 275 LAGLLMWIPDWF----GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAML 349 (375)
T ss_dssp HTSSSSSHHHHH----HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHH
T ss_pred HHHHHHHHHhhh----ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111011100 00112222222333333334445667788899998 8999999999999999999999999888
Q ss_pred hhccccCCCCCCCCCCcchHHHHHHHHHHHHHhH
Q 036040 268 AQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGL 301 (338)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (338)
. +..++...+.+. ++.+++.
T Consensus 350 ~-------------~~~~~~~~~~~~-~~~~~~~ 369 (375)
T 2gfp_A 350 P-------------QTGQGSLGLLMT-LMGLLIV 369 (375)
T ss_dssp H-------------HHHHHHHHHHHH-HHHHHHH
T ss_pred h-------------cCCcccHHHHHH-HHHHHHH
Confidence 6 455666666543 3333333
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.07 E-value=1e-10 Score=106.59 Aligned_cols=133 Identities=8% Similarity=0.007 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcc-cccchhhHHHHHHHHHHhhccCccceeeeeecccCCccchhhhHHHHHHHHHHH
Q 036040 178 TIQLIGFFFMTVFMLALAIPYHHWI-QKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPARFRSTCHGISAAAGKAG 256 (338)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~g 256 (338)
+.+.++.++.+++.+++........ ........++...++.+++.....+..+.++.|..|++.|++++|+.++...+|
T Consensus 374 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g 453 (524)
T 2xut_A 374 RKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVG 453 (524)
T ss_dssp HHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHH
Confidence 4455555555555444433211000 001122233333344444444445667788999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCC--Ccch-HHHHHHHHHHHHHhHhhee-ecccCCCCCh
Q 036040 257 AIIGAFGFLYAAQDQDKSKADPGYPA--GIGI-KNTLFLLAAVNVLGLLFTF-LVPEPNGRSL 315 (338)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~ 315 (338)
+.+++.+.+.+.+.... ++.. ..+. ...|++.+++++++.++.+ +.++.++++.
T Consensus 454 ~~~g~~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (524)
T 2xut_A 454 NLWVLLANVSVKSPTVT-----EQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQDH 511 (524)
T ss_dssp HHHHHHHHHHTTSCHHH-----HHHHHHHSCHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHhcccccc-----cccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 99999999988620000 0000 0111 2336666777676666555 5566655443
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.95 E-value=5.4e-11 Score=105.25 Aligned_cols=166 Identities=10% Similarity=-0.130 Sum_probs=95.7
Q ss_pred HHHhHhhhhhhccHHHHHHH-ccCCCCCCCCChhhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhchHHHHHHHHHHHH
Q 036040 110 LLLDVSYFSQNLFQKEIFTA-VGWLPAAHTMGALDELFNFARAQTLVALCGLIPGYWITVILIDIIGRVTIQLIGFFFMT 188 (338)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~ 188 (338)
+.....+.....+.|.++++ .|+++.+ .........++.+++.+++|+++||+|||++++++..+.+
T Consensus 17 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~------------~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~ 84 (417)
T 2cfq_A 17 FFYFFIMGAYFPFFPIWLHDINHISKSD------------TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML 84 (417)
T ss_dssp HHHHHHHHHHTTTHHHHHHTTTCCCTTT------------SHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 33444455556788888876 7888776 3346777788888999999999999999999988766554
Q ss_pred HHHHHH---HhhhhhcccccchhhHHHHHHHHHHhhccCccceeeeeecccCCc--cchhhhHHHHHHHHHHHHHHHHHH
Q 036040 189 VFMLAL---AIPYHHWIQKHNSTGFVVMYALTFFFANFGPNSTTFIVPAEIFPA--RFRSTCHGISAAAGKAGAIIGAFG 263 (338)
Q Consensus 189 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~R~~~~~~~~~~~~~g~~~~~~~ 263 (338)
+..... .+..... .... ......+.......+.......+..++ +.|+.+.|.....+.+|..++|.+
T Consensus 85 ~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l 157 (417)
T 2cfq_A 85 VMFAPFFIFIFGPLLQ------YNIL-VGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASI 157 (417)
T ss_dssp SCHHHHHHHTHHHHHH------TTCC-HHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH------HHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHH
Confidence 322111 1111000 0000 111111110000001111122333332 345667777777788899999999
Q ss_pred HHHhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHhHhheeecc
Q 036040 264 FLYAAQDQDKSKADPGYPAGIGIKNTLFLLAAVNVLGLLFTFLVP 308 (338)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (338)
.+.+. + .+|+..|++.++..++..+..++.+
T Consensus 158 ~~~l~-------------~-~~~~~~f~~~~~~~~~~~~~~~~~~ 188 (417)
T 2cfq_A 158 VGIMF-------------T-INNQFVFWLGSGCALILAVLLFFAK 188 (417)
T ss_dssp HHHHH-------------H-HCSHHHHTTTTTTTTTHHHHSCSSC
T ss_pred HHHHH-------------H-hchhHHHHHHHHHHHHHHHHHHHcC
Confidence 98886 2 4678888766655544444444333
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=66.27 E-value=4.3 Score=18.40 Aligned_cols=14 Identities=36% Similarity=0.401 Sum_probs=11.4
Q ss_pred HHHHHHHhhchHHH
Q 036040 166 ITVILIDIIGRVTI 179 (338)
Q Consensus 166 ~~g~l~d~~grr~~ 179 (338)
+.|.++.++|||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 36889999999865
No 16
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=50.29 E-value=19 Score=18.10 Aligned_cols=15 Identities=13% Similarity=0.461 Sum_probs=10.3
Q ss_pred HHHHHHHhccCCchh
Q 036040 14 FTYYWRMKMPETPHY 28 (338)
Q Consensus 14 i~~~~~~~lpEsp~~ 28 (338)
..+++..+.+|+||.
T Consensus 15 giiFFAI~FRePPri 29 (32)
T 3arc_T 15 ALFFFAIFFREPPRI 29 (32)
T ss_dssp HHHHHHHHTSCCCCC
T ss_pred HHHHHhhhhcCCCCC
Confidence 344555678999986
No 17
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=33.16 E-value=36 Score=21.11 Aligned_cols=31 Identities=10% Similarity=0.098 Sum_probs=15.9
Q ss_pred cchHHHHHHHHHHHHHhHhhee-ecccCCCCC
Q 036040 284 IGIKNTLFLLAAVNVLGLLFTF-LVPEPNGRS 314 (338)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~ 314 (338)
.||..++++...+.++++-++- .+||..+..
T Consensus 30 Ag~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~a 61 (77)
T 2dw3_A 30 AGWAGGVFFGTLLLIGFFRVVGRMLPIQENQA 61 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTCSSC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCchhcccC
Confidence 3555555544444444433333 788865544
Done!