Query 036042
Match_columns 121
No_of_seqs 101 out of 296
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 08:51:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036042.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036042hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 99.9 3.5E-27 7.6E-32 206.0 5.6 95 4-98 183-305 (506)
2 PF03141 Methyltransf_29: Puta 45.2 12 0.00027 33.9 1.5 23 1-23 108-130 (506)
3 COG2052 Uncharacterized protei 40.1 21 0.00045 25.4 1.7 25 1-25 42-68 (89)
4 KOG4123 Putative alpha 1,2 man 28.1 21 0.00045 32.7 0.2 36 82-117 246-283 (550)
5 COG0723 QcrA Rieske Fe-S prote 23.9 46 0.00099 25.0 1.3 14 14-27 134-147 (177)
6 KOG4004 Matricellular protein 21.2 30 0.00064 28.8 -0.2 23 81-103 215-237 (259)
7 PF07623 PEGSRP: Protein of un 20.3 33 0.00072 19.7 -0.1 10 48-57 1-10 (27)
8 TIGR01509 HAD-SF-IA-v3 haloaci 20.1 30 0.00066 24.4 -0.3 17 13-29 2-18 (183)
9 PF09981 DUF2218: Uncharacteri 19.8 87 0.0019 21.6 2.0 20 7-26 21-40 (89)
10 PF11396 DUF2874: Protein of u 19.6 97 0.0021 18.8 2.0 15 8-22 47-61 (61)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.93 E-value=3.5e-27 Score=205.95 Aligned_cols=95 Identities=35% Similarity=0.689 Sum_probs=82.6
Q ss_pred ccccccceeEEEecCce----------------eeecCCCCCCC-cccHHHHHH-----------HhhhcCceEEEEcCC
Q 036042 4 DIAFGHSTRVVFDVDCG----------------VANFEPVYGDG-KIRVEQWKE-----------LVKKEGYIAMWRKPV 55 (121)
Q Consensus 4 ~~~~~~~~~~~~~~~~~----------------VlSgPPVy~k~-~ed~~eW~~-----------kvaekg~~AIWqKP~ 55 (121)
|++---||++.|..++| ||||||||+++ +++.+||++ +|++++++||||||+
T Consensus 183 DmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~~~~~aIwqKp~ 262 (506)
T PF03141_consen 183 DMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAEKGDTAIWQKPT 262 (506)
T ss_pred hhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHheeeCCEEEEeccC
Confidence 44445688888888765 49999999554 455679999 999999999999999
Q ss_pred CChhhhccCCCCCCCCCCCCCCCCCcccccccccccccccCCc
Q 036042 56 NNTCYASHGAGVQPPICDSDDDPENVCYVGARACITEVQNCQR 98 (121)
Q Consensus 56 nnsCy~kR~~~~~PplC~~~ddpD~aWY~pMeaCITplP~~~~ 98 (121)
||+||.+|+..+.||+|++++|||++||+||++||||+|++.+
T Consensus 263 ~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~ 305 (506)
T PF03141_consen 263 NNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSS 305 (506)
T ss_pred CchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccc
Confidence 9999999988789999999999999999999999999998744
No 2
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=45.17 E-value=12 Score=33.94 Aligned_cols=23 Identities=48% Similarity=0.912 Sum_probs=20.2
Q ss_pred CCCccccccceeEEEecCceeee
Q 036042 1 MVPDIAFGHSTRVVFDVDCGVAN 23 (121)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~VlS 23 (121)
|+|.+..|.+.|+.+|+=|||-|
T Consensus 108 ~~~~~~~~g~iR~~LDvGcG~aS 130 (506)
T PF03141_consen 108 MIPLIKWGGGIRTALDVGCGVAS 130 (506)
T ss_pred HhhccccCCceEEEEeccceeeh
Confidence 57888899999999999999944
No 3
>COG2052 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.08 E-value=21 Score=25.45 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=20.1
Q ss_pred CCCccccccceeEE--EecCceeeecC
Q 036042 1 MVPDIAFGHSTRVV--FDVDCGVANFE 25 (121)
Q Consensus 1 ~~~~~~~~~~~~~~--~~~~~~VlSgP 25 (121)
|+-|-.+|.|||-+ -|.|-.|||+-
T Consensus 42 ~LIDATYGRrTRavii~DS~hvILSAi 68 (89)
T COG2052 42 MLIDATYGRRTRAVIITDSDHVILSAI 68 (89)
T ss_pred cEEEcccCceeeEEEEecCCcEEEecc
Confidence 34577899999965 59999999984
No 4
>KOG4123 consensus Putative alpha 1,2 mannosyltransferase [Carbohydrate transport and metabolism]
Probab=28.10 E-value=21 Score=32.70 Aligned_cols=36 Identities=31% Similarity=0.379 Sum_probs=26.1
Q ss_pred cccccc-cccccccc-CCccchhhHHhhhhhhheeeec
Q 036042 82 CYVGAR-ACITEVQN-CQRMIMDLIIQHGLHAFMIHLT 117 (121)
Q Consensus 82 WY~pMe-aCITplP~-~~~~~~~~~~~~~~~~~~~~~~ 117 (121)
.|..-+ ==|||+-. --++++..|++||+||-..||.
T Consensus 246 yy~~~~nfViTpwNnLkyNln~qnla~HGlHprytHl~ 283 (550)
T KOG4123|consen 246 YYGNGKNFVITPWNNLKYNLNIQNLAQHGLHPRYTHLF 283 (550)
T ss_pred hhcCCCcEEEeehhhhhhcCCHHHHHhcCcchhHHHHH
Confidence 444444 45677544 4578999999999999988863
No 5
>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion]
Probab=23.91 E-value=46 Score=25.01 Aligned_cols=14 Identities=29% Similarity=0.297 Sum_probs=11.9
Q ss_pred EEecCceeeecCCC
Q 036042 14 VFDVDCGVANFEPV 27 (121)
Q Consensus 14 ~~~~~~~VlSgPPV 27 (121)
+||+||+|+.||+.
T Consensus 134 ~yd~~g~vv~GPA~ 147 (177)
T COG0723 134 RYDPDGGVVKGPAP 147 (177)
T ss_pred eEcCCCCeeCCCCC
Confidence 48999999999654
No 6
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=21.22 E-value=30 Score=28.83 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=17.9
Q ss_pred cccccccccccccccCCccchhh
Q 036042 81 VCYVGARACITEVQNCQRMIMDL 103 (121)
Q Consensus 81 aWY~pMeaCITplP~~~~~~~~~ 103 (121)
|=-.||+.|+||.-+.-++++|-
T Consensus 215 ap~ipme~c~~~f~e~cd~~nd~ 237 (259)
T KOG4004|consen 215 APLIPMEHCTTRFFETCDLDNDK 237 (259)
T ss_pred CCcccHHhhchhhhhcccCCCCC
Confidence 34589999999988877776654
No 7
>PF07623 PEGSRP: Protein of unknown function (DUF1584); InterPro: IPR011477 This sequence motif is highly conserved in several short hypothetical proteins from Rhodopirellula baltica. It is also associated with IPR011476 from INTERPRO in Q7UJJ9 from SWISSPROT.
Probab=20.26 E-value=33 Score=19.66 Aligned_cols=10 Identities=50% Similarity=1.199 Sum_probs=7.3
Q ss_pred eEEEEcCCCC
Q 036042 48 IAMWRKPVNN 57 (121)
Q Consensus 48 ~AIWqKP~nn 57 (121)
+|+||||.-.
T Consensus 1 LA~~RkppG~ 10 (27)
T PF07623_consen 1 LAVWRKPPGE 10 (27)
T ss_pred CcccccCCCC
Confidence 4789999753
No 8
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=20.07 E-value=30 Score=24.39 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=14.6
Q ss_pred EEEecCceeeecCCCCC
Q 036042 13 VVFDVDCGVANFEPVYG 29 (121)
Q Consensus 13 ~~~~~~~~VlSgPPVy~ 29 (121)
|.||.||.++++.|.+.
T Consensus 2 vlFDlDgtLv~~~~~~~ 18 (183)
T TIGR01509 2 ILFDLDGVLVDTSSAIE 18 (183)
T ss_pred eeeccCCceechHHHHH
Confidence 68999999999988754
No 9
>PF09981 DUF2218: Uncharacterized protein conserved in bacteria (DUF2218); InterPro: IPR014543 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2JPI_A.
Probab=19.75 E-value=87 Score=21.59 Aligned_cols=20 Identities=35% Similarity=0.526 Sum_probs=15.5
Q ss_pred cccceeEEEecCceeeecCC
Q 036042 7 FGHSTRVVFDVDCGVANFEP 26 (121)
Q Consensus 7 ~~~~~~~~~~~~~~VlSgPP 26 (121)
|+|..-|.||.+.|.+..|-
T Consensus 21 f~hk~~v~~d~~~g~i~f~~ 40 (89)
T PF09981_consen 21 FAHKFEVEWDEDSGRITFPF 40 (89)
T ss_dssp TTTSSEEEE-SSEEEEE-SS
T ss_pred hcCCCceEEcCCceEEEeCC
Confidence 88999999999998888773
No 10
>PF11396 DUF2874: Protein of unknown function (DUF2874); InterPro: IPR021533 This bacterial family of proteins are probable periplasmic proteins with unknown function. There are between one and four copies of this domain per sequence. ; PDB: 3DUE_A 3U1W_B 3DB7_A 4DSD_A 3ELG_A.
Probab=19.56 E-value=97 Score=18.79 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=11.4
Q ss_pred ccceeEEEecCceee
Q 036042 8 GHSTRVVFDVDCGVA 22 (121)
Q Consensus 8 ~~~~~~~~~~~~~Vl 22 (121)
|....|.||++|-+|
T Consensus 47 ~~~~~v~fd~~G~~l 61 (61)
T PF11396_consen 47 GNEYEVYFDANGNWL 61 (61)
T ss_dssp TTSEEEEEETTS-EE
T ss_pred CCeEEEEEcCCCCCC
Confidence 367889999999764
Done!