Query 036042
Match_columns 121
No_of_seqs 101 out of 296
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 14:54:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036042.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036042hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qyi_A ZR25, hypothetical prot 43.3 6.5 0.00022 32.2 0.7 11 13-23 4-14 (384)
2 1hym_B CMTI-V, hydrolyzed cucu 38.7 25 0.00086 19.0 2.4 19 9-27 5-23 (26)
3 3pct_A Class C acid phosphatas 33.5 12 0.00043 29.3 0.9 20 10-29 58-77 (260)
4 3ocu_A Lipoprotein E; hydrolas 33.3 13 0.00044 29.3 0.9 17 12-28 60-76 (262)
5 2ov2_I Serine/threonine-protei 26.6 43 0.0015 18.6 2.1 25 6-30 7-31 (35)
6 2qme_I CRIB domain of the seri 24.9 19 0.00064 20.3 0.4 24 6-29 7-30 (36)
7 4ay0_A Chaperone protein CAF1M 21.5 34 0.0011 26.0 1.3 17 3-19 3-27 (218)
8 2y5p_A Internalin B, INLB; pro 21.2 51 0.0017 20.8 2.0 14 10-23 4-17 (74)
9 2odb_B Serine/threonine-protei 20.4 27 0.00092 19.5 0.4 21 6-26 7-27 (35)
10 2bj0_A Acetylcholine-binding p 17.8 64 0.0022 23.4 2.1 28 2-29 82-118 (203)
No 1
>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13
Probab=43.26 E-value=6.5 Score=32.21 Aligned_cols=11 Identities=36% Similarity=0.582 Sum_probs=8.6
Q ss_pred EEEecCceeee
Q 036042 13 VVFDVDCGVAN 23 (121)
Q Consensus 13 ~~~~~~~~VlS 23 (121)
|.||+||+.||
T Consensus 4 ~~fdvdgv~~~ 14 (384)
T 1qyi_A 4 ILFDVDGVFLS 14 (384)
T ss_dssp EEECSBTTTBC
T ss_pred EEEecCceeec
Confidence 67888888765
No 2
>1hym_B CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=38.68 E-value=25 Score=18.95 Aligned_cols=19 Identities=11% Similarity=0.045 Sum_probs=15.7
Q ss_pred cceeEEEecCceeeecCCC
Q 036042 9 HSTRVVFDVDCGVANFEPV 27 (121)
Q Consensus 9 ~~~~~~~~~~~~VlSgPPV 27 (121)
+|.||..|.+|.|..-|-|
T Consensus 5 ~RVrvfvd~~g~V~~~P~i 23 (26)
T 1hym_B 5 NRVRIWVNKRGLVVSPPRI 23 (26)
T ss_dssp TEEEEEEETTTEEECCSBC
T ss_pred CEEEEEECCCCcEEECCcc
Confidence 6889999999888877755
No 3
>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}
Probab=33.51 E-value=12 Score=29.31 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=16.8
Q ss_pred ceeEEEecCceeeecCCCCC
Q 036042 10 STRVVFDVDCGVANFEPVYG 29 (121)
Q Consensus 10 ~~~~~~~~~~~VlSgPPVy~ 29 (121)
.--|+||+|+-++++-|.|.
T Consensus 58 ~~avVfDIDgTlldn~~y~~ 77 (260)
T 3pct_A 58 KKAVVVDLDETMIDNSAYAG 77 (260)
T ss_dssp CEEEEECCBTTTEECHHHHH
T ss_pred CCEEEEECCccCcCChhHHH
Confidence 33599999999999998763
No 4
>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A
Probab=33.28 E-value=13 Score=29.28 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=15.3
Q ss_pred eEEEecCceeeecCCCC
Q 036042 12 RVVFDVDCGVANFEPVY 28 (121)
Q Consensus 12 ~~~~~~~~~VlSgPPVy 28 (121)
-|+||+|+-++++.|.|
T Consensus 60 avVfDIDgTlldn~~y~ 76 (262)
T 3ocu_A 60 AVVADLNETMLDNSPYA 76 (262)
T ss_dssp EEEECCBTTTEECHHHH
T ss_pred EEEEECCCcCCCCchhh
Confidence 59999999999999865
No 5
>2ov2_I Serine/threonine-protein kinase PAK 4; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3, signalling protein; HET: GCP; 2.10A {Homo sapiens}
Probab=26.61 E-value=43 Score=18.59 Aligned_cols=25 Identities=20% Similarity=0.068 Sum_probs=19.3
Q ss_pred ccccceeEEEecCceeeecCCCCCC
Q 036042 6 AFGHSTRVVFDVDCGVANFEPVYGD 30 (121)
Q Consensus 6 ~~~~~~~~~~~~~~~VlSgPPVy~k 30 (121)
-|-|..-|-||.+-|=+.|=|--|+
T Consensus 7 nf~H~~Hvg~d~~tg~~~Glp~eW~ 31 (35)
T 2ov2_I 7 NFEHRVHTGFDQHEQKFTGLPRQWQ 31 (35)
T ss_dssp EEEEEEEEEEETTTTEEESCCGGGT
T ss_pred CCcCeeeeeeCCCCCcccCCCHHHH
Confidence 4889999999998777777665554
No 6
>2qme_I CRIB domain of the serine/threonine-protein kinas; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3; HET: GCP; 1.75A {Homo sapiens}
Probab=24.88 E-value=19 Score=20.30 Aligned_cols=24 Identities=29% Similarity=0.246 Sum_probs=14.8
Q ss_pred ccccceeEEEecCceeeecCCCCC
Q 036042 6 AFGHSTRVVFDVDCGVANFEPVYG 29 (121)
Q Consensus 6 ~~~~~~~~~~~~~~~VlSgPPVy~ 29 (121)
-|.|.+-|-||..-|-+.|-|--|
T Consensus 7 nf~H~~Hvg~d~~tG~~~glp~~W 30 (36)
T 2qme_I 7 DFEHTIHVGFDAVTGEFTGMPEQW 30 (36)
T ss_dssp EEEEEEEECCBTTTTBCC------
T ss_pred CCCCeeEcccCCCCCcccCCCHHH
Confidence 478999999999877676765444
No 7
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=21.53 E-value=34 Score=26.03 Aligned_cols=17 Identities=35% Similarity=0.901 Sum_probs=8.8
Q ss_pred Cccccc--------cceeEEEecCc
Q 036042 3 PDIAFG--------HSTRVVFDVDC 19 (121)
Q Consensus 3 ~~~~~~--------~~~~~~~~~~~ 19 (121)
|+|.|+ .+|||.|++|-
T Consensus 3 ~~i~~as~~agv~l~~TRvIy~~~~ 27 (218)
T 4ay0_A 3 PDIKFASKEYGVTIGESRIIYPLDA 27 (218)
T ss_dssp ----------CEEESCCEEEEETTC
T ss_pred CCCccEeeeeeEEECceEEEECCCC
Confidence 677777 48999998774
No 8
>2y5p_A Internalin B, INLB; protein binding, virulence factor, pathogenicity factor, BET fold; 1.30A {Listeria monocytogenes}
Probab=21.25 E-value=51 Score=20.80 Aligned_cols=14 Identities=36% Similarity=0.418 Sum_probs=11.0
Q ss_pred ceeEEEecCceeee
Q 036042 10 STRVVFDVDCGVAN 23 (121)
Q Consensus 10 ~~~~~~~~~~~VlS 23 (121)
+..|.||+|||+.+
T Consensus 4 ~ytVtFd~nGg~~~ 17 (74)
T 2y5p_A 4 VYTVSYDVDGTVIK 17 (74)
T ss_dssp EEEEEEEETTEEEE
T ss_pred EEEEEEECCCCEee
Confidence 45799999999643
No 9
>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structu genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens}
Probab=20.45 E-value=27 Score=19.46 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=16.6
Q ss_pred ccccceeEEEecCceeeecCC
Q 036042 6 AFGHSTRVVFDVDCGVANFEP 26 (121)
Q Consensus 6 ~~~~~~~~~~~~~~~VlSgPP 26 (121)
-|-|..-|-||.+-|-+.|=|
T Consensus 7 nf~H~~Hvg~d~~tG~f~Glp 27 (35)
T 2odb_B 7 NFQHRVHTSFDPKEGKFVGLP 27 (35)
T ss_dssp EEEEEEEEEEETTTTEEESCC
T ss_pred CCcCeeeeeECCCCCcccCCC
Confidence 478999999999977576654
No 10
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus}
Probab=17.79 E-value=64 Score=23.39 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=19.0
Q ss_pred CCccccccc---------eeEEEecCceeeecCCCCC
Q 036042 2 VPDIAFGHS---------TRVVFDVDCGVANFEPVYG 29 (121)
Q Consensus 2 ~~~~~~~~~---------~~~~~~~~~~VlSgPPVy~ 29 (121)
+|||.|-.+ +.|....||-|+..+|+--
T Consensus 82 ~PDi~~~N~~~~~~~~~~~~v~i~~~G~V~~~~~~~~ 118 (203)
T 2bj0_A 82 TPDLSFYNAIAAPELLSADRVVVSKDGSVIYVPSQRV 118 (203)
T ss_dssp CCCEEETTCSSCCEECSCCEEEEETTSEEEECCEEEE
T ss_pred CCCccccccccccccccceEEEEeCCcEEEEecceEE
Confidence 477766555 5677777888877777533
Done!