Query 036046
Match_columns 538
No_of_seqs 225 out of 1544
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 08:53:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036046.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036046hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 9E-145 2E-149 1141.8 44.1 475 60-537 31-508 (524)
2 PLN02849 beta-glucosidase 100.0 5E-133 1E-137 1081.9 47.3 456 60-537 24-482 (503)
3 PLN02998 beta-glucosidase 100.0 5E-133 1E-137 1080.5 45.7 459 61-537 26-487 (497)
4 PLN02814 beta-glucosidase 100.0 1E-131 3E-136 1071.1 44.4 455 61-537 23-482 (504)
5 PRK13511 6-phospho-beta-galact 100.0 2E-127 5E-132 1035.5 45.3 447 64-537 3-465 (469)
6 TIGR01233 lacG 6-phospho-beta- 100.0 4E-127 8E-132 1031.4 45.3 443 65-538 3-464 (467)
7 PF00232 Glyco_hydro_1: Glycos 100.0 9E-128 2E-132 1038.3 36.4 449 63-538 2-453 (455)
8 COG2723 BglB Beta-glucosidase/ 100.0 4E-127 8E-132 1002.2 39.7 447 64-537 2-452 (460)
9 PRK09589 celA 6-phospho-beta-g 100.0 2E-126 4E-131 1027.4 45.7 444 65-537 3-471 (476)
10 PRK09593 arb 6-phospho-beta-gl 100.0 2E-126 5E-131 1027.2 44.2 444 64-537 4-472 (478)
11 PRK15014 6-phospho-beta-glucos 100.0 3E-125 7E-130 1017.1 44.9 446 62-537 2-472 (477)
12 PRK09852 cryptic 6-phospho-bet 100.0 1E-124 3E-129 1011.0 45.4 443 65-537 3-468 (474)
13 TIGR03356 BGL beta-galactosida 100.0 1E-121 3E-126 980.6 41.2 427 66-531 1-427 (427)
14 smart00633 Glyco_10 Glycosyl h 99.6 1.4E-13 2.9E-18 138.4 23.8 250 141-530 1-253 (254)
15 PF02449 Glyco_hydro_42: Beta- 99.3 3.5E-12 7.6E-17 135.2 9.4 109 120-234 10-141 (374)
16 PF07745 Glyco_hydro_53: Glyco 99.1 2.4E-08 5.2E-13 103.6 25.4 251 123-498 27-299 (332)
17 PF00331 Glyco_hydro_10: Glyco 99.1 2.7E-08 5.9E-13 103.4 24.7 273 133-533 34-318 (320)
18 PRK10150 beta-D-glucuronidase; 99.1 2.7E-08 5.9E-13 112.0 25.2 264 120-536 313-593 (604)
19 PF00150 Cellulase: Cellulase 99.0 5.9E-10 1.3E-14 112.2 9.7 109 121-234 22-134 (281)
20 PF01229 Glyco_hydro_39: Glyco 98.9 1E-07 2.3E-12 104.6 19.5 291 121-533 40-358 (486)
21 COG1874 LacA Beta-galactosidas 98.7 2.5E-08 5.4E-13 111.4 8.4 121 120-246 30-177 (673)
22 COG3693 XynA Beta-1,4-xylanase 98.7 4.3E-06 9.4E-11 84.9 23.4 274 140-537 66-343 (345)
23 COG3867 Arabinogalactan endo-1 98.2 0.0011 2.4E-08 66.8 24.1 256 123-496 66-343 (403)
24 PF02836 Glyco_hydro_2_C: Glyc 98.1 8.7E-05 1.9E-09 76.3 15.0 93 118-231 34-132 (298)
25 COG2730 BglC Endoglucanase [Ca 97.8 6.3E-05 1.4E-09 80.9 9.4 111 123-233 76-193 (407)
26 PF01301 Glyco_hydro_35: Glyco 97.6 0.00025 5.5E-09 73.8 9.3 109 121-232 25-151 (319)
27 PLN03059 beta-galactosidase; P 97.5 0.0013 2.7E-08 75.6 13.8 110 120-233 59-189 (840)
28 PF14587 Glyco_hydr_30_2: O-Gl 96.6 0.013 2.8E-07 61.9 10.1 103 130-233 57-185 (384)
29 PF01373 Glyco_hydro_14: Glyco 96.4 0.0059 1.3E-07 64.8 6.5 106 119-232 15-151 (402)
30 PLN02161 beta-amylase 96.3 0.019 4.1E-07 62.2 9.8 111 116-233 113-262 (531)
31 PLN02803 beta-amylase 96.3 0.02 4.4E-07 62.3 9.6 109 118-233 105-252 (548)
32 PF11790 Glyco_hydro_cc: Glyco 96.2 0.027 5.9E-07 56.3 9.7 66 423-500 152-217 (239)
33 PLN00197 beta-amylase; Provisi 96.2 0.025 5.4E-07 61.8 9.7 109 118-233 125-272 (573)
34 PLN02801 beta-amylase 96.0 0.041 8.8E-07 59.7 10.4 100 118-222 35-173 (517)
35 PF03198 Glyco_hydro_72: Gluca 95.8 0.17 3.8E-06 52.1 13.4 48 121-184 54-101 (314)
36 PLN02905 beta-amylase 95.7 0.069 1.5E-06 59.1 10.6 101 116-221 282-421 (702)
37 PLN02705 beta-amylase 95.6 0.073 1.6E-06 58.8 10.2 100 117-221 265-403 (681)
38 KOG0496 Beta-galactosidase [Ca 95.4 0.094 2E-06 58.5 10.3 109 121-233 50-177 (649)
39 PF13204 DUF4038: Protein of u 95.1 0.16 3.4E-06 52.3 10.4 105 122-231 32-156 (289)
40 PF14488 DUF4434: Domain of un 94.6 0.27 5.8E-06 46.4 9.9 105 120-232 20-131 (166)
41 PRK09525 lacZ beta-D-galactosi 94.0 0.21 4.7E-06 59.9 9.6 91 118-232 369-464 (1027)
42 PF12891 Glyco_hydro_44: Glyco 93.6 0.2 4.4E-06 49.8 7.1 116 162-300 24-182 (239)
43 COG3250 LacZ Beta-galactosidas 93.2 0.39 8.5E-06 56.0 9.7 90 116-232 317-408 (808)
44 PRK10340 ebgA cryptic beta-D-g 92.9 0.41 8.9E-06 57.6 9.6 90 118-231 353-450 (1021)
45 COG3934 Endo-beta-mannanase [C 86.8 0.36 7.7E-06 52.2 1.9 109 121-233 27-150 (587)
46 COG3664 XynB Beta-xylosidase [ 81.3 1.9 4E-05 46.0 4.4 99 129-234 14-117 (428)
47 PF07488 Glyco_hydro_67M: Glyc 80.4 15 0.00033 37.9 10.3 88 119-220 56-150 (328)
48 smart00642 Aamy Alpha-amylase 78.9 5.5 0.00012 37.5 6.4 65 118-182 17-90 (166)
49 PF14871 GHL6: Hypothetical gl 78.6 22 0.00048 32.2 9.9 94 124-218 4-123 (132)
50 PF02638 DUF187: Glycosyl hydr 75.7 12 0.00026 39.0 8.3 97 119-219 18-154 (311)
51 KOG2233 Alpha-N-acetylglucosam 74.8 9.5 0.0002 41.6 7.3 114 118-231 76-248 (666)
52 TIGR02402 trehalose_TreZ malto 69.5 24 0.00052 39.6 9.5 93 118-219 109-237 (542)
53 PF00332 Glyco_hydro_17: Glyco 67.9 8.1 0.00018 40.2 5.0 82 424-516 212-302 (310)
54 PF05089 NAGLU: Alpha-N-acetyl 65.6 18 0.00039 37.9 6.9 111 119-231 18-184 (333)
55 PRK05402 glycogen branching en 65.5 37 0.0008 39.6 10.2 100 119-228 264-404 (726)
56 PRK12313 glycogen branching en 65.2 30 0.00066 39.6 9.4 101 118-228 168-309 (633)
57 PLN02361 alpha-amylase 62.7 16 0.00034 39.5 6.1 66 117-182 26-96 (401)
58 PRK05799 coproporphyrinogen II 61.7 16 0.00035 38.7 6.0 94 123-234 99-195 (374)
59 PF10566 Glyco_hydro_97: Glyco 61.5 47 0.001 34.0 9.0 100 115-217 27-149 (273)
60 PF00128 Alpha-amylase: Alpha 59.0 11 0.00025 37.6 4.1 59 122-183 6-73 (316)
61 cd06543 GH18_PF-ChiA-like PF-C 55.9 58 0.0013 33.6 8.7 74 127-219 19-104 (294)
62 cd06593 GH31_xylosidase_YicI Y 53.6 83 0.0018 32.4 9.5 106 121-231 25-160 (308)
63 cd06601 GH31_lyase_GLase GLase 51.7 49 0.0011 34.7 7.5 68 165-236 67-139 (332)
64 TIGR01515 branching_enzym alph 51.6 84 0.0018 35.9 9.9 100 119-228 155-295 (613)
65 TIGR00433 bioB biotin syntheta 51.6 40 0.00086 34.3 6.7 54 123-181 123-177 (296)
66 COG5309 Exo-beta-1,3-glucanase 51.4 48 0.001 33.8 6.9 53 113-183 56-108 (305)
67 PRK09441 cytoplasmic alpha-amy 50.9 31 0.00068 38.0 6.2 67 117-183 19-102 (479)
68 cd03174 DRE_TIM_metallolyase D 50.4 49 0.0011 32.8 7.1 83 123-219 77-159 (265)
69 TIGR00612 ispG_gcpE 1-hydroxy- 49.4 93 0.002 32.8 8.8 88 112-215 74-161 (346)
70 cd07945 DRE_TIM_CMS Leptospira 48.9 48 0.0011 33.9 6.8 82 123-216 77-158 (280)
71 TIGR03581 EF_0839 conserved hy 48.8 36 0.00078 33.5 5.4 51 120-180 135-207 (236)
72 PF02055 Glyco_hydro_30: O-Gly 47.8 1.1E+02 0.0023 34.2 9.7 98 427-535 319-420 (496)
73 PRK04161 tagatose 1,6-diphosph 47.5 88 0.0019 32.8 8.3 91 125-226 112-205 (329)
74 PRK08599 coproporphyrinogen II 47.5 69 0.0015 34.0 8.0 94 123-234 100-196 (377)
75 TIGR02090 LEU1_arch isopropylm 47.1 54 0.0012 34.8 7.1 61 122-183 73-133 (363)
76 PRK12399 tagatose 1,6-diphosph 47.1 89 0.0019 32.7 8.3 90 126-226 111-203 (324)
77 cd06592 GH31_glucosidase_KIAA1 47.1 84 0.0018 32.4 8.3 107 121-232 31-167 (303)
78 PRK14705 glycogen branching en 46.3 1E+02 0.0023 38.1 9.9 94 119-219 764-897 (1224)
79 cd07939 DRE_TIM_NifV Streptomy 46.0 56 0.0012 32.8 6.7 59 123-182 72-130 (259)
80 cd06603 GH31_GANC_GANAB_alpha 45.8 91 0.002 32.7 8.5 71 165-235 67-167 (339)
81 PRK12858 tagatose 1,6-diphosph 45.7 87 0.0019 33.1 8.2 57 126-187 112-168 (340)
82 PF03659 Glyco_hydro_71: Glyco 45.0 84 0.0018 33.8 8.1 51 120-182 17-67 (386)
83 PRK14041 oxaloacetate decarbox 44.8 80 0.0017 34.9 8.0 56 118-188 88-148 (467)
84 PRK12581 oxaloacetate decarbox 44.8 54 0.0012 36.2 6.7 56 118-188 98-158 (468)
85 PRK12568 glycogen branching en 44.3 87 0.0019 36.6 8.5 102 119-228 268-408 (730)
86 TIGR02403 trehalose_treC alpha 43.8 36 0.00078 38.2 5.3 67 117-183 24-96 (543)
87 PLN00196 alpha-amylase; Provis 43.5 51 0.0011 35.9 6.3 65 118-182 42-112 (428)
88 COG0821 gcpE 1-hydroxy-2-methy 43.3 1.6E+02 0.0035 31.0 9.4 86 114-215 78-163 (361)
89 PF12876 Cellulase-like: Sugar 43.0 13 0.00029 30.9 1.3 19 214-232 1-22 (88)
90 PRK14511 maltooligosyl trehalo 42.8 77 0.0017 37.7 7.9 57 119-183 19-90 (879)
91 PRK10933 trehalose-6-phosphate 42.6 40 0.00086 38.0 5.4 64 117-183 30-102 (551)
92 cd06602 GH31_MGAM_SI_GAA This 42.3 1.3E+02 0.0028 31.6 9.0 69 165-234 69-169 (339)
93 PRK14706 glycogen branching en 42.0 98 0.0021 35.6 8.5 87 127-219 175-299 (639)
94 COG1523 PulA Type II secretory 41.5 60 0.0013 37.6 6.6 57 126-182 206-285 (697)
95 PLN02447 1,4-alpha-glucan-bran 41.4 55 0.0012 38.3 6.4 95 117-219 247-383 (758)
96 cd06600 GH31_MGAM-like This fa 41.2 1.6E+02 0.0035 30.6 9.3 70 164-234 66-164 (317)
97 PRK14040 oxaloacetate decarbox 40.7 92 0.002 35.5 7.9 92 123-233 100-211 (593)
98 PRK05692 hydroxymethylglutaryl 40.6 70 0.0015 32.9 6.4 87 122-219 81-168 (287)
99 PLN02784 alpha-amylase 40.2 59 0.0013 38.5 6.3 66 117-182 518-588 (894)
100 cd07948 DRE_TIM_HCS Saccharomy 40.1 48 0.001 33.6 5.1 60 123-183 74-133 (262)
101 PRK09058 coproporphyrinogen II 39.1 88 0.0019 34.2 7.3 104 123-245 163-270 (449)
102 cd06598 GH31_transferase_CtsZ 39.1 1.8E+02 0.0038 30.2 9.3 110 122-234 26-168 (317)
103 PF02065 Melibiase: Melibiase; 38.9 1.6E+02 0.0034 31.9 9.0 93 120-219 58-183 (394)
104 PLN02746 hydroxymethylglutaryl 38.6 79 0.0017 33.5 6.6 85 122-216 123-208 (347)
105 PRK00366 ispG 4-hydroxy-3-meth 38.5 1.8E+02 0.0039 30.9 9.0 89 112-215 82-170 (360)
106 TIGR02660 nifV_homocitr homoci 37.8 81 0.0018 33.5 6.6 81 123-219 75-155 (365)
107 TIGR01210 conserved hypothetic 37.7 1.9E+02 0.0041 30.0 9.2 109 123-246 117-229 (313)
108 PRK07379 coproporphyrinogen II 37.3 1.5E+02 0.0032 31.9 8.6 104 123-244 115-221 (400)
109 PRK12331 oxaloacetate decarbox 37.0 1.5E+02 0.0032 32.7 8.5 52 122-188 98-149 (448)
110 cd07938 DRE_TIM_HMGL 3-hydroxy 36.8 1.1E+02 0.0025 31.0 7.3 86 123-219 76-162 (274)
111 TIGR03234 OH-pyruv-isom hydrox 36.8 1.1E+02 0.0025 30.0 7.2 69 117-188 81-150 (254)
112 cd06591 GH31_xylosidase_XylS X 36.4 2E+02 0.0043 29.9 9.2 70 164-234 68-163 (319)
113 PRK09505 malS alpha-amylase; R 35.8 72 0.0016 37.0 6.2 64 120-183 230-313 (683)
114 TIGR00539 hemN_rel putative ox 35.8 1.5E+02 0.0032 31.3 8.3 91 123-232 100-194 (360)
115 PRK11858 aksA trans-homoaconit 35.8 1E+02 0.0022 32.9 7.0 59 123-182 78-136 (378)
116 cd07944 DRE_TIM_HOA_like 4-hyd 35.5 1.5E+02 0.0032 30.0 7.8 67 123-219 85-151 (266)
117 cd02874 GH18_CFLE_spore_hydrol 35.3 1.5E+02 0.0033 30.4 8.0 84 126-219 16-103 (313)
118 PLN02389 biotin synthase 34.9 1.1E+02 0.0024 32.8 7.1 57 121-182 176-233 (379)
119 COG2951 MltB Membrane-bound ly 34.8 47 0.001 35.1 4.2 95 422-526 110-223 (343)
120 cd06545 GH18_3CO4_chitinase Th 34.6 1.3E+02 0.0028 29.9 7.3 74 139-219 26-99 (253)
121 TIGR02456 treS_nterm trehalose 34.3 58 0.0013 36.5 5.1 61 119-183 27-97 (539)
122 PF13200 DUF4015: Putative gly 34.2 1.2E+02 0.0027 31.6 7.1 97 120-217 13-136 (316)
123 PF10566 Glyco_hydro_97: Glyco 34.2 70 0.0015 32.8 5.2 71 122-205 108-178 (273)
124 PF00150 Cellulase: Cellulase 33.2 1.1E+02 0.0024 30.2 6.5 57 163-222 22-78 (281)
125 PRK06294 coproporphyrinogen II 33.1 2E+02 0.0043 30.6 8.7 93 123-234 103-199 (370)
126 cd07937 DRE_TIM_PC_TC_5S Pyruv 33.1 2.4E+02 0.0053 28.6 9.0 68 122-216 93-160 (275)
127 TIGR02635 RhaI_grampos L-rhamn 32.9 3E+02 0.0064 29.6 9.9 89 114-220 35-130 (378)
128 TIGR02401 trehalose_TreY malto 32.7 1.2E+02 0.0025 36.0 7.2 60 119-186 15-91 (825)
129 PRK07094 biotin synthase; Prov 31.5 81 0.0018 32.6 5.3 56 121-181 127-184 (323)
130 cd06599 GH31_glycosidase_Aec37 31.2 3.3E+02 0.0072 28.2 9.8 111 122-233 31-171 (317)
131 PRK13398 3-deoxy-7-phosphohept 30.6 1.9E+02 0.0042 29.4 7.7 72 116-192 37-108 (266)
132 TIGR01211 ELP3 histone acetylt 30.3 2.3E+02 0.005 31.8 8.8 107 123-247 206-317 (522)
133 COG3589 Uncharacterized conser 29.9 1.1E+02 0.0024 32.3 5.7 58 123-193 19-76 (360)
134 smart00729 Elp3 Elongator prot 29.3 2.7E+02 0.0058 25.6 8.1 57 122-182 99-157 (216)
135 COG1501 Alpha-glucosidases, fa 28.8 1.8E+02 0.0039 34.3 8.0 99 133-236 295-421 (772)
136 COG5510 Predicted small secret 28.7 38 0.00082 24.7 1.5 21 22-42 5-25 (44)
137 PRK00694 4-hydroxy-3-methylbut 28.6 2.7E+02 0.0059 31.5 8.8 57 123-193 48-105 (606)
138 TIGR01108 oadA oxaloacetate de 28.2 2.3E+02 0.005 32.3 8.5 93 122-233 93-205 (582)
139 cd07947 DRE_TIM_Re_CS Clostrid 28.2 1.9E+02 0.0042 29.5 7.3 60 122-182 76-135 (279)
140 PF03511 Fanconi_A: Fanconi an 28.1 40 0.00088 26.4 1.7 38 144-185 19-56 (64)
141 KOG1065 Maltase glucoamylase a 28.0 2.3E+02 0.005 33.3 8.4 107 122-236 313-454 (805)
142 TIGR01232 lacD tagatose 1,6-di 28.0 2.7E+02 0.0058 29.2 8.2 91 125-226 111-204 (325)
143 PF04551 GcpE: GcpE protein; 27.9 1.4E+02 0.0031 31.6 6.3 87 112-214 76-169 (359)
144 PRK11572 copper homeostasis pr 27.1 1.5E+02 0.0033 29.9 6.1 44 117-171 70-113 (248)
145 PRK12755 phospho-2-dehydro-3-d 26.9 2.4E+02 0.0053 30.0 7.8 64 117-181 65-143 (353)
146 cd02742 GH20_hexosaminidase Be 26.9 1.7E+02 0.0038 30.1 6.8 66 120-191 16-98 (303)
147 PRK09249 coproporphyrinogen II 26.6 2.4E+02 0.0051 30.9 8.1 77 122-216 150-229 (453)
148 PRK03705 glycogen debranching 26.5 1.5E+02 0.0032 34.4 6.6 55 126-183 185-263 (658)
149 PRK10785 maltodextrin glucosid 26.5 1.2E+02 0.0026 34.5 6.0 56 120-183 179-247 (598)
150 PLN02960 alpha-amylase 26.2 1.3E+02 0.0029 35.8 6.2 95 117-219 413-549 (897)
151 cd06542 GH18_EndoS-like Endo-b 26.2 1.8E+02 0.004 28.7 6.7 55 161-219 50-104 (255)
152 PRK06256 biotin synthase; Vali 26.0 1.1E+02 0.0024 31.8 5.2 56 121-181 150-206 (336)
153 PRK14507 putative bifunctional 25.7 1.8E+02 0.0039 37.3 7.6 67 118-192 756-844 (1693)
154 PRK13209 L-xylulose 5-phosphat 25.4 5E+02 0.011 25.8 9.8 53 121-179 22-74 (283)
155 PRK14510 putative bifunctional 24.6 89 0.0019 38.8 4.7 65 118-182 183-267 (1221)
156 PF04551 GcpE: GcpE protein; 24.5 3.8E+02 0.0082 28.6 8.6 58 123-194 34-92 (359)
157 cd07940 DRE_TIM_IPMS 2-isoprop 24.3 2.2E+02 0.0049 28.6 6.9 81 123-219 72-156 (268)
158 PRK09856 fructoselysine 3-epim 24.3 1.3E+02 0.0029 29.9 5.3 61 117-180 87-147 (275)
159 cd06419 GH25_muramidase_2 Unch 24.0 1.8E+02 0.004 27.8 5.9 25 201-225 109-133 (190)
160 cd06594 GH31_glucosidase_YihQ 23.5 5.7E+02 0.012 26.5 9.9 66 165-232 74-168 (317)
161 cd06570 GH20_chitobiase-like_1 23.5 3.1E+02 0.0066 28.6 7.8 66 120-191 18-94 (311)
162 TIGR02100 glgX_debranch glycog 23.3 1.3E+02 0.0027 35.1 5.4 56 126-183 190-266 (688)
163 TIGR01212 radical SAM protein, 23.3 5E+02 0.011 26.7 9.4 72 162-246 163-234 (302)
164 cd06568 GH20_SpHex_like A subg 23.1 2.7E+02 0.0059 29.1 7.4 67 120-192 18-102 (329)
165 PTZ00445 p36-lilke protein; Pr 23.0 1.4E+02 0.003 29.5 4.8 51 162-216 29-89 (219)
166 cd06565 GH20_GcnA-like Glycosy 22.9 3.2E+02 0.007 28.1 7.9 65 121-192 18-87 (301)
167 cd02803 OYE_like_FMN_family Ol 22.6 4.8E+02 0.01 26.7 9.2 32 154-185 69-100 (327)
168 cd07943 DRE_TIM_HOA 4-hydroxy- 22.4 5E+02 0.011 26.0 9.0 46 123-183 88-133 (263)
169 PRK09432 metF 5,10-methylenete 22.4 2.2E+02 0.0047 29.4 6.4 76 156-234 186-283 (296)
170 PF04055 Radical_SAM: Radical 22.2 1.3E+02 0.0028 26.4 4.3 52 123-178 90-143 (166)
171 TIGR00423 radical SAM domain p 21.7 1.4E+02 0.003 30.8 4.8 53 122-182 106-165 (309)
172 PRK08508 biotin synthase; Prov 21.6 1.9E+02 0.004 29.5 5.7 56 122-182 101-157 (279)
173 PF01261 AP_endonuc_2: Xylose 21.6 1.3E+02 0.0028 28.0 4.3 63 117-180 68-130 (213)
174 PRK08446 coproporphyrinogen II 21.3 3.1E+02 0.0066 28.9 7.5 92 123-233 98-193 (350)
175 TIGR02631 xylA_Arthro xylose i 21.3 5.4E+02 0.012 27.6 9.4 72 121-201 33-105 (382)
176 PRK01060 endonuclease IV; Prov 20.9 3.3E+02 0.0073 27.1 7.4 50 122-178 14-63 (281)
177 PRK08195 4-hyroxy-2-oxovalerat 20.8 3.8E+02 0.0082 28.2 7.9 68 123-220 91-158 (337)
178 PRK10340 ebgA cryptic beta-D-g 20.7 3.3E+02 0.0072 33.2 8.4 76 437-536 505-600 (1021)
179 PTZ00445 p36-lilke protein; Pr 20.5 2E+02 0.0043 28.5 5.3 56 126-183 35-99 (219)
180 cd07941 DRE_TIM_LeuA3 Desulfob 20.4 1.6E+02 0.0034 29.9 4.9 61 124-185 82-142 (273)
181 TIGR00419 tim triosephosphate 20.3 2.6E+02 0.0056 27.4 6.1 43 127-182 75-117 (205)
182 cd00019 AP2Ec AP endonuclease 20.0 4.3E+02 0.0093 26.3 8.0 54 120-180 10-64 (279)
183 TIGR00542 hxl6Piso_put hexulos 20.0 2.1E+02 0.0046 28.6 5.8 60 118-180 92-151 (279)
184 TIGR00676 fadh2 5,10-methylene 20.0 2.7E+02 0.0058 28.2 6.5 97 122-234 143-264 (272)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9e-145 Score=1141.75 Aligned_cols=475 Identities=55% Similarity=1.051 Sum_probs=439.3
Q ss_pred cccccCCCCcccccccccccccCCCcCCCCCcCcceeecccccCCcccCCCCCcccchhhhchHHHHHHHHHhCCCEEEe
Q 036046 60 NIKRSNFPANFSFGASTSAAQIEGATTEDGKGPSIWDDFIERYPGKVMNGNDLITAIDSYRRYKEDMKAVKELGVDSYRF 139 (538)
Q Consensus 60 ~~~~~~fP~~FlwG~atsa~QvEG~~~~dgk~~s~WD~~~~~~~~~~~~~~~~~~a~d~Y~~y~eDi~lm~~lG~~~~Rf 139 (538)
.+.|.+||+||+||+||||||+|||+++|||++|+||+|+|..|+++.+++++|+|||+||||+|||+|||+||+++|||
T Consensus 31 ~~~r~~FP~~F~FGtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~afRF 110 (524)
T KOG0626|consen 31 KFSRADFPKGFLFGTATSAYQVEGAANEDGRGPSVWDTFTHKYPGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDAFRF 110 (524)
T ss_pred cccccCCCCCceeeccchHHHhhhhhccCCCCCchhhhhhccCCcccccCCCCCeechhhhhhHHHHHHHHHcCCCeEEE
Confidence 46788999999999999999999999999999999999999778788888899999999999999999999999999999
Q ss_pred cccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCCCCchhHHHHHHHHHHHHHHhC
Q 036046 140 SISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGPLNRSFVDDFKDYAEICFKSFG 219 (538)
Q Consensus 140 si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fg 219 (538)
|||||||+|.|+..+.||++||+||+++|++|+++||+|+|||+|||+|++|+++||||+|++++++|++||++||++||
T Consensus 111 SIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~fG 190 (524)
T KOG0626|consen 111 SISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQEFG 190 (524)
T ss_pred EeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999655789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceEEeeccchhhhhcccccCcCCCCCCCC-CCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEee
Q 036046 220 DRVKNWMTINEPLIASKYGYESGTAAPGRCSD-RNNCPAGNSSTEPYIASHNFLLAHAAAFRLYEQKFRAKQGGQIGLSL 298 (538)
Q Consensus 220 d~V~~W~t~NEp~~~~~~gy~~G~~pPg~~~~-~~~~~~g~~~~~~~~~~h~lllAHa~A~~~~r~~~~~~~~g~IGi~~ 298 (538)
|+||+|||||||++++..||..|..|||+|+. ..+|+.|+|++++|+|+||||+|||+||++||++|+..|+|+|||++
T Consensus 191 DrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~ 270 (524)
T KOG0626|consen 191 DRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIAL 270 (524)
T ss_pred ccceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEE
Confidence 99999999999999999999999999999987 57899999999999999999999999999999999999999999999
Q ss_pred cCceeecCCCCHHHHHHHHHHHHHhhcccccceeecccchHHHHHhhccCCCCCHHHHHHhcCCcceeeeecCcceeeec
Q 036046 299 VSQFYEPLSNSSDDKAAAERALDFQLGWYLNPLVYGDYPKIMRKLARNRLPTFTAEEKKLVKGAFDFIGLNYYTTNYAKS 378 (538)
Q Consensus 299 ~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dpi~~G~YP~~m~~~l~~~lp~ft~ed~~~ikgs~DFiGiNyY~~~~v~~ 378 (538)
+..|++|++++++|++||+|+.+|..+|+++|++.|+||+.|++.+++|||.||++|++++||+.||+|||||++.+++.
T Consensus 271 ~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~~ 350 (524)
T KOG0626|consen 271 SARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVKH 350 (524)
T ss_pred eeeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhhc
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCccccCccceeeeccCC-ccCCCCCCCCCCcccChHHHHHHHHHHHHHcCCCeEEEeecCccccCCCCcCc
Q 036046 379 IPMNSNGPPVSVTADQFVDFTVERDG-VLIGPEAEGSGYIYIYPKGMQQVLEYVKNNYQNPAIYITENGVTEQRNDNLTL 457 (538)
Q Consensus 379 ~~~~~~~~~~~~~~d~~~~~~~~~~g-~~~~~~~~~~~w~~i~P~GL~~~L~~l~~~Y~~pPI~ITENG~~~~~~~~~~~ 457 (538)
.......+.+.+..|..+.. ..++ ...+..+ .+.|..++|+||+++|++++++|++|||||||||+++.+....+.
T Consensus 351 ~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~-~~~~~~v~P~Glr~~L~yiK~~Y~np~iyItENG~~d~~~~~~~~ 427 (524)
T KOG0626|consen 351 LKPPPDPSQPGWSTDSGVDW--TLEGNDLIGPKA-GSDWLPVYPWGLRKLLNYIKDKYGNPPIYITENGFDDLDGGTKSL 427 (524)
T ss_pred cCCCCCCCCcccccccceee--eecccccccccc-cccceeeccHHHHHHHHHHHhhcCCCcEEEEeCCCCcccccccch
Confidence 65422211344555555444 1222 3445555 678989999999999999999999999999999999976543344
Q ss_pred CcccChhhhHHHHHHHHHHHHHHHH-cCCCEEEEEeccCCCcccccCCCCCccceEEEeCCCCCccccChhHHHHHHHHh
Q 036046 458 DVALKDEHRVDFVLGHLYYLHEAIK-NGVNVKGYFYWSAFDDFEWGIGYLPRFGLYFIDYNNNLTRIPKESAKWVRDFLE 536 (538)
Q Consensus 458 ~~~i~D~~Ri~yl~~hL~~~~kAi~-dGv~v~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~~~~~R~pK~S~~~y~~ii~ 536 (538)
...++|..||+|++.||.+|+|||. +||||+|||+|||||||||..||+.|||||+|||+|+++|+||.|++||+++|+
T Consensus 428 ~~~l~D~~Ri~Y~~~~L~~~~kAi~~dgvnv~GYf~WSLmDnfEw~~Gy~~RFGlyyVDf~d~l~R~pK~Sa~wy~~fl~ 507 (524)
T KOG0626|consen 428 EVALKDTKRIEYLQNHLQAVLKAIKEDGVNVKGYFVWSLLDNFEWLDGYKVRFGLYYVDFKDPLKRYPKLSAKWYKKFLK 507 (524)
T ss_pred hhhhcchHHHHHHHHHHHHHHHHHHhcCCceeeEEEeEcccchhhhcCcccccccEEEeCCCCCcCCchhHHHHHHHHHc
Confidence 5577999999999999999999997 999999999999999999999999999999999998899999999999999998
Q ss_pred c
Q 036046 537 G 537 (538)
Q Consensus 537 ~ 537 (538)
+
T Consensus 508 ~ 508 (524)
T KOG0626|consen 508 G 508 (524)
T ss_pred C
Confidence 5
No 2
>PLN02849 beta-glucosidase
Probab=100.00 E-value=5e-133 Score=1081.91 Aligned_cols=456 Identities=45% Similarity=0.843 Sum_probs=407.8
Q ss_pred cccccCCCCcccccccccccccCCCcCCCCCcCcceeecccccCCcccCCCCCcccchhhhchHHHHHHHHHhCCCEEEe
Q 036046 60 NIKRSNFPANFSFGASTSAAQIEGATTEDGKGPSIWDDFIERYPGKVMNGNDLITAIDSYRRYKEDMKAVKELGVDSYRF 139 (538)
Q Consensus 60 ~~~~~~fP~~FlwG~atsa~QvEG~~~~dgk~~s~WD~~~~~~~~~~~~~~~~~~a~d~Y~~y~eDi~lm~~lG~~~~Rf 139 (538)
.+++.+||+||+||+|||||||||++++||||+|+||+|.+. + ++.++++||||||||+|||+|||+||+++|||
T Consensus 24 ~~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~SiwD~~~~~-~----~~~~~~~a~D~YhrY~eDI~Lm~~lG~~aYRf 98 (503)
T PLN02849 24 DYSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKPSVWDTFLHS-R----NMSNGDIACDGYHKYKEDVKLMVETGLDAFRF 98 (503)
T ss_pred CCccccCCCCCEEEeechhhhhcCCcCCCCCcCcceeeeecc-C----CCCCCCccccHHHhHHHHHHHHHHcCCCeEEE
Confidence 355678999999999999999999999999999999999873 3 34678999999999999999999999999999
Q ss_pred cccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCCCCchhHHHHHHHHHHHHHHhC
Q 036046 140 SISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGPLNRSFVDDFKDYAEICFKSFG 219 (538)
Q Consensus 140 si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fg 219 (538)
||+||||+|+| +|.+|++||+||+++|++|+++||+|||||+|||+|+||+++||||+|++++++|++||+.||++||
T Consensus 99 SIsWsRI~P~G--~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fg 176 (503)
T PLN02849 99 SISWSRLIPNG--RGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRRIIKDFTAYADVCFREFG 176 (503)
T ss_pred eccHHhcCcCC--CCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCchHHHHHHHHHHHHHHHhc
Confidence 99999999998 4899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceEEeeccchhhhhcccccCcCCCCCCCC-CCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEee
Q 036046 220 DRVKNWMTINEPLIASKYGYESGTAAPGRCSD-RNNCPAGNSSTEPYIASHNFLLAHAAAFRLYEQKFRAKQGGQIGLSL 298 (538)
Q Consensus 220 d~V~~W~t~NEp~~~~~~gy~~G~~pPg~~~~-~~~~~~g~~~~~~~~~~h~lllAHa~A~~~~r~~~~~~~~g~IGi~~ 298 (538)
|+||+|+|||||++++..||..|.+|||++.. ...|+.+++.++.++++||+++|||+||++||++++..++++||+++
T Consensus 177 DrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~ 256 (503)
T PLN02849 177 NHVKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKYKDMQGGSIGFSL 256 (503)
T ss_pred CcCCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 99999999999999999999999999997542 12466566667899999999999999999999976545789999999
Q ss_pred cCceeecCCCCHHHHHHHHHHHHHhhcccccceeecccchHHHHHhhccCCCCCHHHHHHhcCCcceeeeecCcceeeec
Q 036046 299 VSQFYEPLSNSSDDKAAAERALDFQLGWYLNPLVYGDYPKIMRKLARNRLPTFTAEEKKLVKGAFDFIGLNYYTTNYAKS 378 (538)
Q Consensus 299 ~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dpi~~G~YP~~m~~~l~~~lp~ft~ed~~~ikgs~DFiGiNyY~~~~v~~ 378 (538)
+..+++|.+++++|++||++++++.++||+||++.|+||+.|++.+++++|.|+++|+++|++++||||||||++.+|+.
T Consensus 257 ~~~~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~~ 336 (503)
T PLN02849 257 FALGFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGSRLPVFSKEESEQVKGSSDFIGVIHYLAASVTN 336 (503)
T ss_pred ECceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEeccchhhccc
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999999999975
Q ss_pred CCCCCC-CCCCccccCccceeeeccCCccCCCCCCCCCCcccChHHHHHHHHHHHHHcCCCeEEEeecCccccCCCCcCc
Q 036046 379 IPMNSN-GPPVSVTADQFVDFTVERDGVLIGPEAEGSGYIYIYPKGMQQVLEYVKNNYQNPAIYITENGVTEQRNDNLTL 457 (538)
Q Consensus 379 ~~~~~~-~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~~w~~i~P~GL~~~L~~l~~~Y~~pPI~ITENG~~~~~~~~~~~ 457 (538)
...... ...+.+.. ..+.+....+ +++| +|+|+||+++|++++++|++|||||||||++..++ .
T Consensus 337 ~~~~~~~~~~~~~~~---------~~~~~~~~~~-~~gw-~i~P~Gl~~~L~~~~~rY~~pPi~ITENG~~~~d~----~ 401 (503)
T PLN02849 337 IKIKPSLSGNPDFYS---------DMGVSLGKFS-AFEY-AVAPWAMESVLEYIKQSYGNPPVYILENGTPMKQD----L 401 (503)
T ss_pred CCCCCCCCCCCcccc---------ccCCCCCccC-CCCC-eEChHHHHHHHHHHHHhcCCCCEEEeCCCCCccCC----C
Confidence 321100 00000000 0011111233 7889 59999999999999999999899999999998753 3
Q ss_pred CcccChhhhHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCcccccCCCCCccceEEEeCCC-CCccccChhHHHHHHHHh
Q 036046 458 DVALKDEHRVDFVLGHLYYLHEAIKNGVNVKGYFYWSAFDDFEWGIGYLPRFGLYFIDYNN-NLTRIPKESAKWVRDFLE 536 (538)
Q Consensus 458 ~~~i~D~~Ri~yl~~hL~~~~kAi~dGv~v~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~~-~~~R~pK~S~~~y~~ii~ 536 (538)
+++++|++||+||++||++|++||+|||||+||++|||+|||||..||++|||||+||+++ +++|+||+|++|||++|+
T Consensus 402 ~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLi~VD~~~~~~~R~pK~S~~wy~~ii~ 481 (503)
T PLN02849 402 QLQQKDTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFMDLYELLKGYEFSFGLYSVNFSDPHRKRSPKLSAHWYSAFLK 481 (503)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceecccHHHHHHHHHH
Confidence 5689999999999999999999999999999999999999999999999999999999996 369999999999999998
Q ss_pred c
Q 036046 537 G 537 (538)
Q Consensus 537 ~ 537 (538)
+
T Consensus 482 ~ 482 (503)
T PLN02849 482 G 482 (503)
T ss_pred h
Confidence 5
No 3
>PLN02998 beta-glucosidase
Probab=100.00 E-value=5e-133 Score=1080.52 Aligned_cols=459 Identities=46% Similarity=0.820 Sum_probs=407.6
Q ss_pred ccccCCCCcccccccccccccCCCcCCCCCcCcceeecccccCCcccCCCCCcccchhhhchHHHHHHHHHhCCCEEEec
Q 036046 61 IKRSNFPANFSFGASTSAAQIEGATTEDGKGPSIWDDFIERYPGKVMNGNDLITAIDSYRRYKEDMKAVKELGVDSYRFS 140 (538)
Q Consensus 61 ~~~~~fP~~FlwG~atsa~QvEG~~~~dgk~~s~WD~~~~~~~~~~~~~~~~~~a~d~Y~~y~eDi~lm~~lG~~~~Rfs 140 (538)
+.+.+||++|+||+|||||||||++++||||+|+||.|++ ++. .+..++++||||||||+|||+|||+||+++||||
T Consensus 26 ~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~--~~~-~~~~~~~~a~D~Yhry~EDi~lmk~lG~~~YRfS 102 (497)
T PLN02998 26 YSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAH--AGH-SGVAAGNVACDQYHKYKEDVKLMADMGLEAYRFS 102 (497)
T ss_pred CccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccc--cCc-CCCCCCcccccHHHhhHHHHHHHHHcCCCeEEee
Confidence 4566899999999999999999999999999999999987 442 2224789999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCCCCchhHHHHHHHHHHHHHHhCC
Q 036046 141 ISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGPLNRSFVDDFKDYAEICFKSFGD 220 (538)
Q Consensus 141 i~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fgd 220 (538)
|+||||+|+| +|.+|++||+||+++|++|+++||+|||||+|||+|+||+++||||+|++++++|++||++||++|||
T Consensus 103 IsWsRI~P~G--~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~v~~F~~YA~~~~~~fgd 180 (497)
T PLN02998 103 ISWSRLLPSG--RGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEIVRDFTAYADTCFKEFGD 180 (497)
T ss_pred ccHHhcCcCC--CCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchHHHHHHHHHHHHHHHhcC
Confidence 9999999998 48899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEeeccchhhhhcccccCcCCCCCCCC--CCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEee
Q 036046 221 RVKNWMTINEPLIASKYGYESGTAAPGRCSD--RNNCPAGNSSTEPYIASHNFLLAHAAAFRLYEQKFRAKQGGQIGLSL 298 (538)
Q Consensus 221 ~V~~W~t~NEp~~~~~~gy~~G~~pPg~~~~--~~~~~~g~~~~~~~~~~h~lllAHa~A~~~~r~~~~~~~~g~IGi~~ 298 (538)
+||+|+|||||++++..||..|.+|||+++. ..+|..+++.++.++++||+++|||+||++||+.++..|+++||+++
T Consensus 181 rVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~ 260 (497)
T PLN02998 181 RVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYKYKQHGSVGISV 260 (497)
T ss_pred cCCEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEE
Confidence 9999999999999999999999999997552 12477777677899999999999999999999987656889999999
Q ss_pred cCceeecCCCCHHHHHHHHHHHHHhhcccccceeecccchHHHHHhhccCCCCCHHHHHHhcCCcceeeeecCcceeeec
Q 036046 299 VSQFYEPLSNSSDDKAAAERALDFQLGWYLNPLVYGDYPKIMRKLARNRLPTFTAEEKKLVKGAFDFIGLNYYTTNYAKS 378 (538)
Q Consensus 299 ~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dpi~~G~YP~~m~~~l~~~lp~ft~ed~~~ikgs~DFiGiNyY~~~~v~~ 378 (538)
+..+++|.+++++|++||++++++.++||+||++.|+||+.|++.+++++|.|+++|+++|++++||||||||++.+|+.
T Consensus 261 ~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~DFlGiNyYts~~v~~ 340 (497)
T PLN02998 261 YTYGAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKGAFDFVGVINYMALYVKD 340 (497)
T ss_pred eCCeeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEchhcCccccc
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999999999975
Q ss_pred CCCCCCCCCCccccCccceeeeccCCccCCCCCCCCCCcccChHHHHHHHHHHHHHcCCCeEEEeecCccccCCCCcCcC
Q 036046 379 IPMNSNGPPVSVTADQFVDFTVERDGVLIGPEAEGSGYIYIYPKGMQQVLEYVKNNYQNPAIYITENGVTEQRNDNLTLD 458 (538)
Q Consensus 379 ~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~~w~~i~P~GL~~~L~~l~~~Y~~pPI~ITENG~~~~~~~~~~~~ 458 (538)
...........+..+..... ...++.+..++| +|+|+||+++|++++++|++|||||||||+++.+ +
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~w-~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~------~ 407 (497)
T PLN02998 341 NSSSLKPNLQDFNTDIAVEM------TLVGNTSIENEY-ANTPWSLQQILLYVKETYGNPPVYILENGQMTPH------S 407 (497)
T ss_pred CCCcCCCCcccccccccccc------ccCCCcCCCCCC-EEChHHHHHHHHHHHHHcCCCCEEEeCCCCccCC------C
Confidence 32110000011111110000 011222213677 6999999999999999999989999999998753 3
Q ss_pred cccChhhhHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCcccccCCCCCccceEEEeCCC-CCccccChhHHHHHHHHhc
Q 036046 459 VALKDEHRVDFVLGHLYYLHEAIKNGVNVKGYFYWSAFDDFEWGIGYLPRFGLYFIDYNN-NLTRIPKESAKWVRDFLEG 537 (538)
Q Consensus 459 ~~i~D~~Ri~yl~~hL~~~~kAi~dGv~v~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~~-~~~R~pK~S~~~y~~ii~~ 537 (538)
++++|++||+||++||.+|++||+|||||+|||+|||+|||||..||++|||||+||++| +++|+||+|++|||++|++
T Consensus 408 g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLv~VD~~~~~~~R~pK~S~~wy~~ii~~ 487 (497)
T PLN02998 408 SSLVDTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLMDVFELFGGYERSFGLLYVDFKDPSLKRSPKLSAHWYSSFLKG 487 (497)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceecccHHHHHHHHHhc
Confidence 678999999999999999999999999999999999999999999999999999999996 4799999999999999986
No 4
>PLN02814 beta-glucosidase
Probab=100.00 E-value=1.3e-131 Score=1071.14 Aligned_cols=455 Identities=44% Similarity=0.786 Sum_probs=405.4
Q ss_pred ccccCCCCcccccccccccccCCCcCCCCCcCcceeecccccCCcccCCCCCcccchhhhchHHHHHHHHHhCCCEEEec
Q 036046 61 IKRSNFPANFSFGASTSAAQIEGATTEDGKGPSIWDDFIERYPGKVMNGNDLITAIDSYRRYKEDMKAVKELGVDSYRFS 140 (538)
Q Consensus 61 ~~~~~fP~~FlwG~atsa~QvEG~~~~dgk~~s~WD~~~~~~~~~~~~~~~~~~a~d~Y~~y~eDi~lm~~lG~~~~Rfs 140 (538)
+.+.+||++|+||+|||||||||++++||||+|+||+|++. .++.++++||||||||+|||+|||+||+++||||
T Consensus 23 ~~~~~fP~~FlwG~AtaA~QiEGa~~~~gkg~siwD~~~~~-----~~~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfS 97 (504)
T PLN02814 23 FTRNDFPEDFLFGAATSAYQWEGAVDEDGRTPSVWDTTSHC-----YNGGNGDIASDGYHKYKEDVKLMAEMGLESFRFS 97 (504)
T ss_pred cccccCCCCCEEeeechhhhhcCCcCCCCCccchhheeeec-----cCCCCCCccccHHHhhHHHHHHHHHcCCCEEEEe
Confidence 45568999999999999999999999999999999999872 2346889999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCCCCchhHHHHHHHHHHHHHHhCC
Q 036046 141 ISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGPLNRSFVDDFKDYAEICFKSFGD 220 (538)
Q Consensus 141 i~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fgd 220 (538)
|+||||+|+| +|.+|++||+||+++|++|+++||+|||||+|||+|+||+++||||+|++++++|++||+.||++|||
T Consensus 98 IsWsRI~P~G--~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgd 175 (504)
T PLN02814 98 ISWSRLIPNG--RGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGE 175 (504)
T ss_pred ccHhhcCcCC--CCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCC
Confidence 9999999998 48999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEeeccchhhhhcccccCcCCCCCCCC--CCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEee
Q 036046 221 RVKNWMTINEPLIASKYGYESGTAAPGRCSD--RNNCPAGNSSTEPYIASHNFLLAHAAAFRLYEQKFRAKQGGQIGLSL 298 (538)
Q Consensus 221 ~V~~W~t~NEp~~~~~~gy~~G~~pPg~~~~--~~~~~~g~~~~~~~~~~h~lllAHa~A~~~~r~~~~~~~~g~IGi~~ 298 (538)
+||+|+|||||++++..||..|.. ||+++. ..+|..+++.++.|+++||+++|||+||++||++++..|+++||+++
T Consensus 176 rVk~WiT~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~ 254 (504)
T PLN02814 176 DVKLWTTINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSI 254 (504)
T ss_pred cCCEEEeccccchhhhcccccCcC-CCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEE
Confidence 999999999999999999999984 886553 12465555567899999999999999999999987666899999999
Q ss_pred cCceeecCCCCHHHHHHHHHHHHHhhcccccceeecccchHHHHHhhccCCCCCHHHHHHhcCCcceeeeecCcceeeec
Q 036046 299 VSQFYEPLSNSSDDKAAAERALDFQLGWYLNPLVYGDYPKIMRKLARNRLPTFTAEEKKLVKGAFDFIGLNYYTTNYAKS 378 (538)
Q Consensus 299 ~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dpi~~G~YP~~m~~~l~~~lp~ft~ed~~~ikgs~DFiGiNyY~~~~v~~ 378 (538)
+..+++|++++|+|++||++++++.++||+||++.|+||+.|++.+++++|.|+++|+++|++++||||||||++.+|+.
T Consensus 255 ~~~~~~P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~ 334 (504)
T PLN02814 255 FAFGLSPYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTN 334 (504)
T ss_pred eCceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCCCCC-C-CCccccCccceeeeccCCccCCCCCCCCCCcccChHHHHHHHHHHHHHcCCCeEEEeecCccccCCCCcC
Q 036046 379 IPMNSNG-P-PVSVTADQFVDFTVERDGVLIGPEAEGSGYIYIYPKGMQQVLEYVKNNYQNPAIYITENGVTEQRNDNLT 456 (538)
Q Consensus 379 ~~~~~~~-~-~~~~~~d~~~~~~~~~~g~~~~~~~~~~~w~~i~P~GL~~~L~~l~~~Y~~pPI~ITENG~~~~~~~~~~ 456 (538)
....... . ...+..+.+.. ..+.++.+ +++| +|+|+||+++|++++++|++|||||||||++..+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~gW-ei~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~----- 401 (504)
T PLN02814 335 RPAPSIFPSMNEGFFTDMGAY------IISAGNSS-FFEF-DATPWGLEGILEHIKQSYNNPPIYILENGMPMKH----- 401 (504)
T ss_pred CCCCCcccccCCCcccccccc------cCCCCCcC-CCCC-eECcHHHHHHHHHHHHhcCCCCEEEECCCCCCCC-----
Confidence 3211000 0 00110000000 01123445 7899 5999999999999999999989999999999753
Q ss_pred cCcccChhhhHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCcccccCCCCCccceEEEeCCC-CCccccChhHHHHHHHH
Q 036046 457 LDVALKDEHRVDFVLGHLYYLHEAIKNGVNVKGYFYWSAFDDFEWGIGYLPRFGLYFIDYNN-NLTRIPKESAKWVRDFL 535 (538)
Q Consensus 457 ~~~~i~D~~Ri~yl~~hL~~~~kAi~dGv~v~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~~-~~~R~pK~S~~~y~~ii 535 (538)
++.++|++||+||++||++|++||+|||||+||++|||+|||||..||++|||||+||++| +++|+||+|++||+++|
T Consensus 402 -~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WSllDnfEW~~Gy~~RfGLvyVD~~~~~~~R~pK~S~~wy~~~i 480 (504)
T PLN02814 402 -DSTLQDTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWSMIDLYELLGGYTTSFGMYYVNFSDPGRKRSPKLSASWYTGFL 480 (504)
T ss_pred -CCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceeeecHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999996 46999999999999999
Q ss_pred hc
Q 036046 536 EG 537 (538)
Q Consensus 536 ~~ 537 (538)
++
T Consensus 481 ~~ 482 (504)
T PLN02814 481 NG 482 (504)
T ss_pred hc
Confidence 75
No 5
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=2.1e-127 Score=1035.54 Aligned_cols=447 Identities=35% Similarity=0.612 Sum_probs=391.0
Q ss_pred cCCCCcccccccccccccCCCcCCCCCcCcceeecccccCCcccCCCCCcccchhhhchHHHHHHHHHhCCCEEEecccc
Q 036046 64 SNFPANFSFGASTSAAQIEGATTEDGKGPSIWDDFIERYPGKVMNGNDLITAIDSYRRYKEDMKAVKELGVDSYRFSISW 143 (538)
Q Consensus 64 ~~fP~~FlwG~atsa~QvEG~~~~dgk~~s~WD~~~~~~~~~~~~~~~~~~a~d~Y~~y~eDi~lm~~lG~~~~Rfsi~W 143 (538)
.+||++|+||+|||||||||++++||||+|+||+|++ .++++ ++++||||||||+|||+|||+||+++|||||+|
T Consensus 3 ~~fP~~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~-~~~~~----~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsW 77 (469)
T PRK13511 3 KTLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLE-ENYWF----TPDPASDFYHRYPEDLKLAEEFGVNGIRISIAW 77 (469)
T ss_pred CCCCCCCEEEeechHhhhcCCcCCCCCccchhhcccc-cCCCC----CCCcccchhhhhHHHHHHHHHhCCCEEEeeccH
Confidence 3699999999999999999999999999999999987 45553 689999999999999999999999999999999
Q ss_pred cccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCCCCchhHHHHHHHHHHHHHHhCCccc
Q 036046 144 TRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGPLNRSFVDDFKDYAEICFKSFGDRVK 223 (538)
Q Consensus 144 sri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fgd~V~ 223 (538)
|||+|+| +|.+|++||+||++||++|+++||+|||||+|||+|+||+++ |||+|++++++|++||++||++||| ||
T Consensus 78 sRI~P~G--~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk 153 (469)
T PRK13511 78 SRIFPDG--YGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VK 153 (469)
T ss_pred hhcCcCC--CCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CC
Confidence 9999998 488999999999999999999999999999999999999987 9999999999999999999999999 99
Q ss_pred eEEeeccchhhhhcccccCcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEeecCcee
Q 036046 224 NWMTINEPLIASKYGYESGTAAPGRCSDRNNCPAGNSSTEPYIASHNFLLAHAAAFRLYEQKFRAKQGGQIGLSLVSQFY 303 (538)
Q Consensus 224 ~W~t~NEp~~~~~~gy~~G~~pPg~~~~~~~~~~g~~~~~~~~~~h~lllAHa~A~~~~r~~~~~~~~g~IGi~~~~~~~ 303 (538)
+|+|||||++++..||..|.+|||++.. .++.++++||+++|||+||++||+.. |+++||++++..++
T Consensus 154 ~W~T~NEP~~~~~~gy~~G~~~Pg~~~~---------~~~~~~~~hn~llAHa~A~~~~~~~~---~~g~IGi~~~~~~~ 221 (469)
T PRK13511 154 YWTTFNEIGPIGDGQYLVGKFPPGIKYD---------LAKVFQSHHNMMVAHARAVKLFKDKG---YKGEIGVVHALPTK 221 (469)
T ss_pred EEEEccchhhhhhcchhhcccCCCCCcc---------HHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceE
Confidence 9999999999999999999999997531 14789999999999999999999864 68999999999999
Q ss_pred ecCC-CCHHHHHHHHHHHHHhhcccccceeecccchHHHHHhhc------cCCCCCHHHHHHhcC---CcceeeeecCcc
Q 036046 304 EPLS-NSSDDKAAAERALDFQLGWYLNPLVYGDYPKIMRKLARN------RLPTFTAEEKKLVKG---AFDFIGLNYYTT 373 (538)
Q Consensus 304 ~P~~-~~~~D~~aa~~~~~~~~~~f~dpi~~G~YP~~m~~~l~~------~lp~ft~ed~~~ikg---s~DFiGiNyY~~ 373 (538)
+|.+ ++++|++||++++++.++||+||++.|+||+.|++.++. ..|.|+++|+++|++ ++||||||||++
T Consensus 222 ~P~~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~ 301 (469)
T PRK13511 222 YPIDPDNPEDVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMS 301 (469)
T ss_pred eeCCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhc
Confidence 9998 899999999999999999999999999999999997741 124899999999974 589999999999
Q ss_pred eeeecCCCCCCCCCCccccCccce---e--eeccCCccCCCCCCCCCCcccChHHHHHHHHHHHHHcCC-CeEEEeecCc
Q 036046 374 NYAKSIPMNSNGPPVSVTADQFVD---F--TVERDGVLIGPEAEGSGYIYIYPKGMQQVLEYVKNNYQN-PAIYITENGV 447 (538)
Q Consensus 374 ~~v~~~~~~~~~~~~~~~~d~~~~---~--~~~~~g~~~~~~~~~~~w~~i~P~GL~~~L~~l~~~Y~~-pPI~ITENG~ 447 (538)
.+|+........ ......+.... . .......+..+.+ +++| +|+|+||+++|++++++|++ |||||||||+
T Consensus 302 ~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gw-~i~P~Gl~~~l~~~~~~Y~~~~pi~ITENG~ 378 (469)
T PRK13511 302 DWMRAYDGETEI-IHNGTGEKGSSKYQLKGVGERVKPPDVPTT-DWDW-IIYPQGLYDQLMRIKKDYPNYKKIYITENGL 378 (469)
T ss_pred ceeecCCCcccc-ccCCCCccccccccccCccccccCCCCCcC-CCCC-eECcHHHHHHHHHHHHHcCCCCCEEEecCCc
Confidence 999753211000 00000000000 0 0000001112445 7889 59999999999999999997 7899999999
Q ss_pred cccCCCCcCcCcccChhhhHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCcccccCCCCCccceEEEeCCCCCccccChh
Q 036046 448 TEQRNDNLTLDVALKDEHRVDFVLGHLYYLHEAIKNGVNVKGYFYWSAFDDFEWGIGYLPRFGLYFIDYNNNLTRIPKES 527 (538)
Q Consensus 448 ~~~~~~~~~~~~~i~D~~Ri~yl~~hL~~~~kAi~dGv~v~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~~~~~R~pK~S 527 (538)
+..++ .+.+++++|++||+||++||++|++||++||||+|||+|||+|||||..||++|||||+||++ |++|+||+|
T Consensus 379 ~~~d~--~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~DnfEW~~Gy~~RfGl~~VD~~-~~~R~pK~S 455 (469)
T PRK13511 379 GYKDE--FVDGKTVDDDKRIDYVKQHLEVISDAISDGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFE-TQERYPKKS 455 (469)
T ss_pred CCCCC--cCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecccccccchhcCccCccceEEECCC-cCccccccH
Confidence 97654 334568999999999999999999999999999999999999999999999999999999999 599999999
Q ss_pred HHHHHHHHhc
Q 036046 528 AKWVRDFLEG 537 (538)
Q Consensus 528 ~~~y~~ii~~ 537 (538)
++||+++|++
T Consensus 456 ~~wy~~~i~~ 465 (469)
T PRK13511 456 AYWYKKLAET 465 (469)
T ss_pred HHHHHHHHHh
Confidence 9999999986
No 6
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=3.9e-127 Score=1031.38 Aligned_cols=443 Identities=35% Similarity=0.608 Sum_probs=390.7
Q ss_pred CCCCcccccccccccccCCCcCCCCCcCcceeecccccCCcccCCCCCcccchhhhchHHHHHHHHHhCCCEEEeccccc
Q 036046 65 NFPANFSFGASTSAAQIEGATTEDGKGPSIWDDFIERYPGKVMNGNDLITAIDSYRRYKEDMKAVKELGVDSYRFSISWT 144 (538)
Q Consensus 65 ~fP~~FlwG~atsa~QvEG~~~~dgk~~s~WD~~~~~~~~~~~~~~~~~~a~d~Y~~y~eDi~lm~~lG~~~~Rfsi~Ws 144 (538)
+||+||+||+|||||||||++++||||+|+||++.+ .+++ .++++||||||||+|||+|||+||+++|||||+||
T Consensus 3 ~fP~~FlwG~AtsA~QvEG~~~~~Gkg~siwD~~~~-~~~~----~~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWs 77 (467)
T TIGR01233 3 TLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLE-DNYW----YTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWS 77 (467)
T ss_pred CCCCCCEEeeechhhhcCCCcCCCCCcCchhhcccc-CCCC----CCCCccCchhhhHHHHHHHHHHcCCCEEEEecchh
Confidence 599999999999999999999999999999999886 3454 35789999999999999999999999999999999
Q ss_pred ccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCCCCchhHHHHHHHHHHHHHHhCCccce
Q 036046 145 RILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGPLNRSFVDDFKDYAEICFKSFGDRVKN 224 (538)
Q Consensus 145 ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fgd~V~~ 224 (538)
||+|+| .|.+|++||+||++||++|+++||+|||||+|||+|+||+++ |||+|++++++|++||++||++||+ |++
T Consensus 78 RI~P~g--~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~ 153 (467)
T TIGR01233 78 RIFPTG--YGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VNY 153 (467)
T ss_pred hccCCC--CCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCE
Confidence 999998 488999999999999999999999999999999999999987 9999999999999999999999998 999
Q ss_pred EEeeccchhhhhcccccCcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEeecCceee
Q 036046 225 WMTINEPLIASKYGYESGTAAPGRCSDRNNCPAGNSSTEPYIASHNFLLAHAAAFRLYEQKFRAKQGGQIGLSLVSQFYE 304 (538)
Q Consensus 225 W~t~NEp~~~~~~gy~~G~~pPg~~~~~~~~~~g~~~~~~~~~~h~lllAHa~A~~~~r~~~~~~~~g~IGi~~~~~~~~ 304 (538)
|+|||||++++..||..|.+|||.+.. .++.++++||+++|||+||++||++. ++++||++++..+++
T Consensus 154 WiT~NEP~~~~~~gy~~G~~~Pg~~~~---------~~~~~~a~hn~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~ 221 (467)
T TIGR01233 154 WTTFNEIGPIGDGQYLVGKFPPGIKYD---------LAKVFQSHHNMMVSHARAVKLYKDKG---YKGEIGVVHALPTKY 221 (467)
T ss_pred EEEecchhhhhhccchhcccCCCccch---------hHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceeE
Confidence 999999999999999999999996431 14789999999999999999999964 689999999999999
Q ss_pred cCC-CCHHHHHHHHHHHHHhhcccccceeecccchHHHHHhhcc------CCCCCHHHHHHh---cCCcceeeeecCcce
Q 036046 305 PLS-NSSDDKAAAERALDFQLGWYLNPLVYGDYPKIMRKLARNR------LPTFTAEEKKLV---KGAFDFIGLNYYTTN 374 (538)
Q Consensus 305 P~~-~~~~D~~aa~~~~~~~~~~f~dpi~~G~YP~~m~~~l~~~------lp~ft~ed~~~i---kgs~DFiGiNyY~~~ 374 (538)
|++ ++++|++||++++++.++||+||+++|+||+.|++.++.+ +|.|+++|+++| ++++||||||||++.
T Consensus 222 P~~~~~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~ 301 (467)
T TIGR01233 222 PYDPENPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSD 301 (467)
T ss_pred ECCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccccce
Confidence 997 8999999999999999999999999999999999988632 378999999999 488999999999999
Q ss_pred eeecCCCCCCC--CCC---c--cccCccceeeeccCCccCC-CCCCCCCCcccChHHHHHHHHHHHHHcCC-CeEEEeec
Q 036046 375 YAKSIPMNSNG--PPV---S--VTADQFVDFTVERDGVLIG-PEAEGSGYIYIYPKGMQQVLEYVKNNYQN-PAIYITEN 445 (538)
Q Consensus 375 ~v~~~~~~~~~--~~~---~--~~~d~~~~~~~~~~g~~~~-~~~~~~~w~~i~P~GL~~~L~~l~~~Y~~-pPI~ITEN 445 (538)
+|+........ ... . .....+.. ....+.+ +.+ +++| +|+|+||+++|++++++|++ ||||||||
T Consensus 302 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~t-~~gw-~i~P~Gl~~~L~~~~~~Y~~~ppi~ItEN 375 (467)
T TIGR01233 302 WMQAFDGETEIIHNGKGEKGSSKYQIKGVG----RRVAPDYVPRT-DWDW-IIYPEGLYDQIMRVKNDYPNYKKIYITEN 375 (467)
T ss_pred eeccCCCccccccCCccccCcccccCCCcc----cccCCCCCCcC-CCCC-eeChHHHHHHHHHHHHHcCCCCCEEEeCC
Confidence 99753111000 000 0 00000000 0001112 445 7888 59999999999999999997 78999999
Q ss_pred CccccCCCCcCcCcccChhhhHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCcccccCCCCCccceEEEeCCCCCccccC
Q 036046 446 GVTEQRNDNLTLDVALKDEHRVDFVLGHLYYLHEAIKNGVNVKGYFYWSAFDDFEWGIGYLPRFGLYFIDYNNNLTRIPK 525 (538)
Q Consensus 446 G~~~~~~~~~~~~~~i~D~~Ri~yl~~hL~~~~kAi~dGv~v~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~~~~~R~pK 525 (538)
|++..++ + .+|.++|++||+||++||++|++||+|||||+||++|||+|||||..||++|||||+||++ |++|+||
T Consensus 376 G~~~~d~--~-~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~Ew~~Gy~~RfGLv~VD~~-t~~R~~K 451 (467)
T TIGR01233 376 GLGYKDE--F-VDNTVYDDGRIDYVKQHLEVLSDAIADGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFD-TQERYPK 451 (467)
T ss_pred CCCCCCC--C-CCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCC-CCccccc
Confidence 9998764 2 2578999999999999999999999999999999999999999999999999999999999 5999999
Q ss_pred hhHHHHHHHHhcC
Q 036046 526 ESAKWVRDFLEGT 538 (538)
Q Consensus 526 ~S~~~y~~ii~~~ 538 (538)
+|++|||++|+++
T Consensus 452 ~S~~wy~~ii~~~ 464 (467)
T TIGR01233 452 KSAHWYKKLAETQ 464 (467)
T ss_pred cHHHHHHHHHHhc
Confidence 9999999999863
No 7
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=9.2e-128 Score=1038.28 Aligned_cols=449 Identities=49% Similarity=0.884 Sum_probs=388.5
Q ss_pred ccCCCCcccccccccccccCCCcCCCCCcCcceeecccccCCcccCCCCCcccchhhhchHHHHHHHHHhCCCEEEeccc
Q 036046 63 RSNFPANFSFGASTSAAQIEGATTEDGKGPSIWDDFIERYPGKVMNGNDLITAIDSYRRYKEDMKAVKELGVDSYRFSIS 142 (538)
Q Consensus 63 ~~~fP~~FlwG~atsa~QvEG~~~~dgk~~s~WD~~~~~~~~~~~~~~~~~~a~d~Y~~y~eDi~lm~~lG~~~~Rfsi~ 142 (538)
+.+||++|+||+|||||||||++++||||+|+||+|++ .++++.++.++++||||||||+|||+|||+||+++|||||+
T Consensus 2 ~~~fp~~F~wG~atsa~Q~EG~~~~dGkg~s~wd~~~~-~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~ 80 (455)
T PF00232_consen 2 SKKFPEDFLWGVATSAYQIEGAWNEDGKGPSIWDTFCH-EPGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSIS 80 (455)
T ss_dssp GGGS-TT-EEEEE--HHHHSSSTTSTTSTTBHHHHHHH-STTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--
T ss_pred CCCCCCCCeEEEeceeccccceecCCCCCccccccccc-ccceeeccccCcccccchhhhhHHHHHHHhhccceeeeecc
Confidence 35899999999999999999999999999999999999 48888888999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCCCCchhHHHHHHHHHHHHHHhCCcc
Q 036046 143 WTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGPLNRSFVDDFKDYAEICFKSFGDRV 222 (538)
Q Consensus 143 Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fgd~V 222 (538)
|+||+|+|. .|.+|++||+||+++|++|+++||+|||||+|||+|+||++ +|||+|+++++.|++||++||++|||+|
T Consensus 81 W~Ri~P~g~-~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V 158 (455)
T PF00232_consen 81 WSRIFPDGF-EGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRV 158 (455)
T ss_dssp HHHHSTTSS-SSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTB
T ss_pred hhheeeccc-ccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999983 39999999999999999999999999999999999999998 6999999999999999999999999999
Q ss_pred ceEEeeccchhhhhcccccCcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEeecCce
Q 036046 223 KNWMTINEPLIASKYGYESGTAAPGRCSDRNNCPAGNSSTEPYIASHNFLLAHAAAFRLYEQKFRAKQGGQIGLSLVSQF 302 (538)
Q Consensus 223 ~~W~t~NEp~~~~~~gy~~G~~pPg~~~~~~~~~~g~~~~~~~~~~h~lllAHa~A~~~~r~~~~~~~~g~IGi~~~~~~ 302 (538)
++|+|||||++++..||..|.+|||..+. ++.++++||+++|||+|+++||+++ ++++||++++..+
T Consensus 159 ~~w~T~NEp~~~~~~~y~~g~~~p~~~~~----------~~~~~~~h~~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~ 225 (455)
T PF00232_consen 159 KYWITFNEPNVFALLGYLYGGFPPGRDSL----------KAFYQAAHNLLLAHAKAVKAIKEKY---PDGKIGIALNFSP 225 (455)
T ss_dssp SEEEEEETHHHHHHHHHTSSSSTTCSSTH----------HHHHHHHHHHHHHHHHHHHHHHHHT---CTSEEEEEEEEEE
T ss_pred ceEEeccccceeecccccccccccccccc----------chhhHHHhhHHHHHHHHHHHHhhcc---cceEEeccccccc
Confidence 99999999999999999999999996553 7899999999999999999999987 7999999999999
Q ss_pred eecCCCCHHHH-HHHHHHHHHhhcccccceeecccchHHHHHhhcc--CCCCCHHHHHHhcCCcceeeeecCcceeeecC
Q 036046 303 YEPLSNSSDDK-AAAERALDFQLGWYLNPLVYGDYPKIMRKLARNR--LPTFTAEEKKLVKGAFDFIGLNYYTTNYAKSI 379 (538)
Q Consensus 303 ~~P~~~~~~D~-~aa~~~~~~~~~~f~dpi~~G~YP~~m~~~l~~~--lp~ft~ed~~~ikgs~DFiGiNyY~~~~v~~~ 379 (538)
++|.+++++|. +||++.+++.++||+||++.|+||..|++.++++ +|.||++|++.|++++||+|||||++..|+..
T Consensus 226 ~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~ 305 (455)
T PF00232_consen 226 FYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRAD 305 (455)
T ss_dssp EEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEES
T ss_pred cCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceeeccC
Confidence 99999887766 8999999999999999999999999999999987 99999999999999999999999999999987
Q ss_pred CCCCCCCCCccccCccceeeeccCCccCCCCCCCCCCcccChHHHHHHHHHHHHHcCCCeEEEeecCccccCCCCcCcCc
Q 036046 380 PMNSNGPPVSVTADQFVDFTVERDGVLIGPEAEGSGYIYIYPKGMQQVLEYVKNNYQNPAIYITENGVTEQRNDNLTLDV 459 (538)
Q Consensus 380 ~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~~w~~i~P~GL~~~L~~l~~~Y~~pPI~ITENG~~~~~~~~~~~~~ 459 (538)
+..... +....... ..... .+.++.+ +++|. ++|+||+++|++++++|++|||||||||+++.++. .++
T Consensus 306 ~~~~~~--~~~~~~~~--~~~~~--~~~~~~t-~~gw~-i~P~Gl~~~L~~l~~~Y~~~pI~ITENG~~~~~~~---~~~ 374 (455)
T PF00232_consen 306 PNPSSP--PSYDSDAP--FGQPY--NPGGPTT-DWGWE-IYPEGLRDVLRYLKDRYGNPPIYITENGIGDPDEV---DDG 374 (455)
T ss_dssp SSSTSS--TTHEEEES--EEEEC--ETSSEBC-TTSTB-BETHHHHHHHHHHHHHHTSSEEEEEEE---EETTC---TTS
T ss_pred cccccc--ccccCCcc--ccccc--ccccccc-ccCcc-cccchHhhhhhhhccccCCCcEEEecccccccccc---ccc
Confidence 532211 11110000 00000 1233456 89995 88999999999999999999999999999998753 228
Q ss_pred ccChhhhHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCcccccCCCCCccceEEEeCCCCCccccChhHHHHHHHHhcC
Q 036046 460 ALKDEHRVDFVLGHLYYLHEAIKNGVNVKGYFYWSAFDDFEWGIGYLPRFGLYFIDYNNNLTRIPKESAKWVRDFLEGT 538 (538)
Q Consensus 460 ~i~D~~Ri~yl~~hL~~~~kAi~dGv~v~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~~~~~R~pK~S~~~y~~ii~~~ 538 (538)
.++|+.||+||++||++|++||+|||||+||++|||+|||||..||++|||||+|||.+|++|+||+|++||+++|+++
T Consensus 375 ~v~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~Ew~~Gy~~rfGl~~VD~~~~~~R~pK~S~~~y~~~i~~n 453 (455)
T PF00232_consen 375 KVDDDYRIDYLQDHLNQVLKAIEDGVNVRGYFAWSLLDNFEWAEGYKKRFGLVYVDFFDTLKRTPKKSAYWYKDFIRSN 453 (455)
T ss_dssp HBSHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEETSB---BGGGGGGSE--SEEEETTTTTEEEEBHHHHHHHHHHHHT
T ss_pred CcCcHHHHHHHHHHHHHHHhhhccCCCeeeEeeeccccccccccCccCccCceEEcCCCCcCeeeccHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999955579999999999999999863
No 8
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.9e-127 Score=1002.21 Aligned_cols=447 Identities=39% Similarity=0.720 Sum_probs=398.4
Q ss_pred cCCCCcccccccccccccCCCcCCCCCcCcceeeccccc-CCcccCCCCCcccchhhhchHHHHHHHHHhCCCEEEeccc
Q 036046 64 SNFPANFSFGASTSAAQIEGATTEDGKGPSIWDDFIERY-PGKVMNGNDLITAIDSYRRYKEDMKAVKELGVDSYRFSIS 142 (538)
Q Consensus 64 ~~fP~~FlwG~atsa~QvEG~~~~dgk~~s~WD~~~~~~-~~~~~~~~~~~~a~d~Y~~y~eDi~lm~~lG~~~~Rfsi~ 142 (538)
.+||++|+||+||||+|+|||+++||||+|+||.|.+.. |+++..+.++++||||||||+|||+|||+||+++|||||+
T Consensus 2 ~~FPkdFlWG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~ 81 (460)
T COG2723 2 LKFPKDFLWGGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIE 81 (460)
T ss_pred CCCCCCCeeecccccccccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeee
Confidence 379999999999999999999999999999999999854 6777778899999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCCCCchhHHHHHHHHHHHHHHhCCcc
Q 036046 143 WTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGPLNRSFVDDFKDYAEICFKSFGDRV 222 (538)
Q Consensus 143 Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fgd~V 222 (538)
||||+|+++ .+.+|++||+||+++||+|+++||+|+|||+|||+|+||+++||||.|++++++|++||+.||++|||+|
T Consensus 82 WsRIfP~g~-~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkV 160 (460)
T COG2723 82 WSRIFPNGD-GGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKV 160 (460)
T ss_pred EEEeecCCC-CCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcc
Confidence 999999984 2389999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEeeccchhhhhcccccCcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEeecCce
Q 036046 223 KNWMTINEPLIASKYGYESGTAAPGRCSDRNNCPAGNSSTEPYIASHNFLLAHAAAFRLYEQKFRAKQGGQIGLSLVSQF 302 (538)
Q Consensus 223 ~~W~t~NEp~~~~~~gy~~G~~pPg~~~~~~~~~~g~~~~~~~~~~h~lllAHa~A~~~~r~~~~~~~~g~IGi~~~~~~ 302 (538)
|+|+|||||++++.+||+.|.+||+..+. +..+||+||+++|||+|++++|+..+ +.+||++++..+
T Consensus 161 k~W~TFNE~n~~~~~~y~~~~~~p~~~~~----------~~~~qa~hh~~lA~A~avk~~~~~~~---~~kIG~~~~~~p 227 (460)
T COG2723 161 KYWFTFNEPNVVVELGYLYGGHPPGIVDP----------KAAYQVAHHMLLAHALAVKAIKKINP---KGKVGIILNLTP 227 (460)
T ss_pred eEEEEecchhhhhcccccccccCCCccCH----------HHHHHHHHHHHHHHHHHHHHHHhhCC---cCceEEEeccCc
Confidence 99999999999999999999999997663 78899999999999999999999763 349999999999
Q ss_pred eecCCCCHHHHHHHHHHHHHhhcccccceeecccchHHHHHhhcc--CCCCCHHHHHHhcC-CcceeeeecCcceeeecC
Q 036046 303 YEPLSNSSDDKAAAERALDFQLGWYLNPLVYGDYPKIMRKLARNR--LPTFTAEEKKLVKG-AFDFIGLNYYTTNYAKSI 379 (538)
Q Consensus 303 ~~P~~~~~~D~~aa~~~~~~~~~~f~dpi~~G~YP~~m~~~l~~~--lp~ft~ed~~~ikg-s~DFiGiNyY~~~~v~~~ 379 (538)
.||.+++|+|+.||+.++++.+++|+||+++|+||..+.+.+... +|.++++|+++||. ++||||+|||++..|...
T Consensus 228 ~YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~~~ 307 (460)
T COG2723 228 AYPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVKAA 307 (460)
T ss_pred CCCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEeec
Confidence 999999999999999999999999999999999999999998764 79999999999986 589999999995555433
Q ss_pred CCCCCCCCCccccCccceeeeccCCccCCCCCCCCCCcccChHHHHHHHHHHHHHcCCCeEEEeecCccccCCCCcCcCc
Q 036046 380 PMNSNGPPVSVTADQFVDFTVERDGVLIGPEAEGSGYIYIYPKGMQQVLEYVKNNYQNPAIYITENGVTEQRNDNLTLDV 459 (538)
Q Consensus 380 ~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~~w~~i~P~GL~~~L~~l~~~Y~~pPI~ITENG~~~~~~~~~~~~~ 459 (538)
..... ..+..+... .... .|..+.+ +.|| +|||+||+.+|+++++||+ +||||||||++..++. ..++
T Consensus 308 ~~~~~---~~~~~~~~~--~~~~--~p~~~~s-dwGW-eI~P~GL~~~l~~~~~rY~-~p~fItENG~G~~d~~--~~~~ 375 (460)
T COG2723 308 EPRYV---SGYGPGGFF--TSVP--NPGLEVS-DWGW-EIYPKGLYDILEKLYERYG-IPLFITENGLGVKDEV--DFDG 375 (460)
T ss_pred cCCcC---Ccccccccc--cccC--CCCCccc-CCCc-eeChHHHHHHHHHHHHHhC-CCeEEecCCCCccccc--ccCC
Confidence 21100 001000000 0000 1222344 8899 5999999999999999999 6899999999988762 2233
Q ss_pred ccChhhhHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCcccccCCCCCccceEEEeCCCCCccccChhHHHHHHHHhc
Q 036046 460 ALKDEHRVDFVLGHLYYLHEAIKNGVNVKGYFYWSAFDDFEWGIGYLPRFGLYFIDYNNNLTRIPKESAKWVRDFLEG 537 (538)
Q Consensus 460 ~i~D~~Ri~yl~~hL~~~~kAi~dGv~v~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~~~~~R~pK~S~~~y~~ii~~ 537 (538)
|+|++||+||++||.+|++||+|||+|+||++||++||+||.+||++|||||+||+++.++|+||+|++|||++|++
T Consensus 376 -i~DdyRI~Yl~~Hl~~v~~AI~dGv~v~GY~~Ws~iD~~sw~~gy~kRYGli~VD~~~~~~R~~KkS~~WyK~vi~s 452 (460)
T COG2723 376 -INDDYRIDYLKEHLKAVKKAIEDGVDVRGYFAWSLIDNYSWANGYKKRYGLVYVDYDTDLERTPKKSFYWYKEVIES 452 (460)
T ss_pred -cCchHHHHHHHHHHHHHHHHHHcCCCcccceecccccccchhhccccccccEEEcccccceeeecCceeeeHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999943799999999999999975
No 9
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=1.8e-126 Score=1027.42 Aligned_cols=444 Identities=32% Similarity=0.541 Sum_probs=384.3
Q ss_pred CCCCcccccccccccccCCCcCCCCCcCcceeecc---cccCCccc----CCC--CCcccchhhhchHHHHHHHHHhCCC
Q 036046 65 NFPANFSFGASTSAAQIEGATTEDGKGPSIWDDFI---ERYPGKVM----NGN--DLITAIDSYRRYKEDMKAVKELGVD 135 (538)
Q Consensus 65 ~fP~~FlwG~atsa~QvEG~~~~dgk~~s~WD~~~---~~~~~~~~----~~~--~~~~a~d~Y~~y~eDi~lm~~lG~~ 135 (538)
+||++|+||+|||||||||++++||||+|+||+|+ +..|+++. ++. ++++||||||||+|||+|||+||++
T Consensus 3 ~fP~~FlwG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~ 82 (476)
T PRK09589 3 GFKKGFLWGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFK 82 (476)
T ss_pred CCCCCCEEeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 69999999999999999999999999999999998 42345443 222 5789999999999999999999999
Q ss_pred EEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCCCCchhHHHHHHHHHHHH
Q 036046 136 SYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGPLNRSFVDDFKDYAEICF 215 (538)
Q Consensus 136 ~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~ 215 (538)
+|||||+||||+|+|. .|.+|++||+||++||++|+++||+|||||+|||+|+||+++||||+|++++++|++||++||
T Consensus 83 ~yRfSIsWsRI~P~G~-~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f 161 (476)
T PRK09589 83 CFRTSIAWTRIFPQGD-ELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVF 161 (476)
T ss_pred EEEeccchhhcCcCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHH
Confidence 9999999999999984 256899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCccceEEeeccchhhhhc-----ccc-cCc-CCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcc
Q 036046 216 KSFGDRVKNWMTINEPLIASKY-----GYE-SGT-AAPGRCSDRNNCPAGNSSTEPYIASHNFLLAHAAAFRLYEQKFRA 288 (538)
Q Consensus 216 ~~fgd~V~~W~t~NEp~~~~~~-----gy~-~G~-~pPg~~~~~~~~~~g~~~~~~~~~~h~lllAHa~A~~~~r~~~~~ 288 (538)
++|||+||+|+|||||++++.. ||. .|. +|||... ....|+++||+++|||+|++++|+..
T Consensus 162 ~~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~~----------~~~~~~~~h~~llAha~A~~~~~~~~-- 229 (476)
T PRK09589 162 TRYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGEDR----------EQIMYQAAHYELVASALAVKTGHEIN-- 229 (476)
T ss_pred HHhcCCCCEEEEecchhhhhccccccCCccccccccCCCCch----------hHHHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 9999999999999999998766 333 343 3555321 24579999999999999999999875
Q ss_pred CCCCeEEEeecCceeecCCCCHHHHHHHHHHHHHhhcccccceeecccchHHHHHhhcc--CCCCCHHHHHHh-cCCcce
Q 036046 289 KQGGQIGLSLVSQFYEPLSNSSDDKAAAERALDFQLGWYLNPLVYGDYPKIMRKLARNR--LPTFTAEEKKLV-KGAFDF 365 (538)
Q Consensus 289 ~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dpi~~G~YP~~m~~~l~~~--lp~ft~ed~~~i-kgs~DF 365 (538)
++++||++++..+++|.+++++|++||++++.+ +.||+||+++|+||+.|++.++++ .|.|+++|+++| ++++||
T Consensus 230 -~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~-~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~DF 307 (476)
T PRK09589 230 -PDFQIGCMIAMCPIYPLTCAPNDMMMATKAMHR-RYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILAEGCVDY 307 (476)
T ss_pred -CCCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHh-ccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCE
Confidence 688999999999999999999999999998854 679999999999999999999864 489999999988 589999
Q ss_pred eeeecCcceeeecCCCCCCCCCCccccCccceeeeccCCccCCCCCCCCCCcccChHHHHHHHHHHHHHcCCCeEEEeec
Q 036046 366 IGLNYYTTNYAKSIPMNSNGPPVSVTADQFVDFTVERDGVLIGPEAEGSGYIYIYPKGMQQVLEYVKNNYQNPAIYITEN 445 (538)
Q Consensus 366 iGiNyY~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~~w~~i~P~GL~~~L~~l~~~Y~~pPI~ITEN 445 (538)
||||||++.+|+....... .....+ .. ...+ +..+.+ +++| +|+|+||+++|++++++|++ |||||||
T Consensus 308 lGiNyYts~~v~~~~~~~~---~~~~~~--~~--~~~~--~~~~~~-~~gw-~i~P~Gl~~~L~~~~~~Y~~-Pi~ItEN 375 (476)
T PRK09589 308 IGFSYYMSFATKFHEDNPQ---LDYVET--RD--LVSN--PYVKAS-EWGW-QIDPAGLRYSLNWFWDHYQL-PLFIVEN 375 (476)
T ss_pred EEEecccCcccccCCCCCC---CCcccc--cc--cccC--CCcccC-CCCC-ccCcHHHHHHHHHHHHhcCC-CEEEEeC
Confidence 9999999999875321100 000000 00 0011 122334 6888 59999999999999999997 6999999
Q ss_pred CccccCCCCcCcCcccChhhhHHHHHHHHHHHHHHH-HcCCCEEEEEeccCCCcccccCC-CCCccceEEEeCCC----C
Q 036046 446 GVTEQRNDNLTLDVALKDEHRVDFVLGHLYYLHEAI-KNGVNVKGYFYWSAFDDFEWGIG-YLPRFGLYFIDYNN----N 519 (538)
Q Consensus 446 G~~~~~~~~~~~~~~i~D~~Ri~yl~~hL~~~~kAi-~dGv~v~GY~~WSl~Dn~EW~~G-y~~RfGL~~VD~~~----~ 519 (538)
|++..++ ++.+|+++|++||+||++||.+|++|| +|||||+|||+|||+|||||..| |++|||||+||++| +
T Consensus 376 G~~~~d~--~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGlv~VD~~~~~~~t 453 (476)
T PRK09589 376 GFGAIDQ--READGTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCIDLVSAGTGEMKKRYGFIYVDKDNEGKGT 453 (476)
T ss_pred CcccCCC--CCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccccccccccCCccccceeeEEEcCCCCCCcc
Confidence 9998765 345678999999999999999999999 89999999999999999999999 99999999999986 4
Q ss_pred CccccChhHHHHHHHHhc
Q 036046 520 LTRIPKESAKWVRDFLEG 537 (538)
Q Consensus 520 ~~R~pK~S~~~y~~ii~~ 537 (538)
++|+||+|++|||++|++
T Consensus 454 ~~R~pK~S~~wy~~~i~~ 471 (476)
T PRK09589 454 LERSRKKSFYWYRDVIAN 471 (476)
T ss_pred cccccccHHHHHHHHHHh
Confidence 699999999999999975
No 10
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=2.2e-126 Score=1027.24 Aligned_cols=444 Identities=30% Similarity=0.502 Sum_probs=388.0
Q ss_pred cCCCCcccccccccccccCCCcCCCCCcCcceeecccccCCccc--C----------C--CCCcccchhhhchHHHHHHH
Q 036046 64 SNFPANFSFGASTSAAQIEGATTEDGKGPSIWDDFIERYPGKVM--N----------G--NDLITAIDSYRRYKEDMKAV 129 (538)
Q Consensus 64 ~~fP~~FlwG~atsa~QvEG~~~~dgk~~s~WD~~~~~~~~~~~--~----------~--~~~~~a~d~Y~~y~eDi~lm 129 (538)
.+||++|+||+|||||||||++++||||+|+||+|.+ .++++. . + .++++||||||||+|||+||
T Consensus 4 ~~fP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~Lm 82 (478)
T PRK09593 4 MPFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPI-GEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIALF 82 (478)
T ss_pred ccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccc-CcCcccccccccccccccccccCCCCcccchHHhhHHHHHHH
Confidence 3699999999999999999999999999999999987 355431 1 1 15789999999999999999
Q ss_pred HHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCCCCchhHHHHHH
Q 036046 130 KELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGPLNRSFVDDFKD 209 (538)
Q Consensus 130 ~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ 209 (538)
|+||+++|||||+||||+|+|. .|.+|++||+||++||++|+++||+|+|||+|||+|+||+++||||+|++++++|++
T Consensus 83 ~~lG~~aYRfSIsWsRI~P~G~-~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~~ 161 (478)
T PRK09593 83 AEMGFKTYRMSIAWTRIFPKGD-ELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYER 161 (478)
T ss_pred HHcCCCEEEEecchhhcccCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHHH
Confidence 9999999999999999999974 256999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCccceEEeeccchhhhhcccc-cCc-CCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhc
Q 036046 210 YAEICFKSFGDRVKNWMTINEPLIASKYGYE-SGT-AAPGRCSDRNNCPAGNSSTEPYIASHNFLLAHAAAFRLYEQKFR 287 (538)
Q Consensus 210 ya~~~~~~fgd~V~~W~t~NEp~~~~~~gy~-~G~-~pPg~~~~~~~~~~g~~~~~~~~~~h~lllAHa~A~~~~r~~~~ 287 (538)
||++||++|||+|++|+|||||++++..||. .|. +|||..+ ..+.|+++||+++|||+||++||+..
T Consensus 162 YA~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~~----------~~~~~~a~h~~llAHa~A~~~~~~~~- 230 (478)
T PRK09593 162 LCRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGENK----------EQVKYQAAHHELVASAIATKIAHEVD- 230 (478)
T ss_pred HHHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCch----------hhhHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 9999999999999999999999999888876 454 3666422 25689999999999999999999854
Q ss_pred cCCCCeEEEeecCceeecCCCCHHHHHHHHHHHHHhhcccccceeecccchHHHHHhhc--cCCCCCHHHHHHhc-CCcc
Q 036046 288 AKQGGQIGLSLVSQFYEPLSNSSDDKAAAERALDFQLGWYLNPLVYGDYPKIMRKLARN--RLPTFTAEEKKLVK-GAFD 364 (538)
Q Consensus 288 ~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dpi~~G~YP~~m~~~l~~--~lp~ft~ed~~~ik-gs~D 364 (538)
|+++||++++..+++|.+++++|++||++++ +.++||+||+++|+||+.|++.++. .+|.|+++|+++|+ +++|
T Consensus 231 --~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~-~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g~~D 307 (478)
T PRK09593 231 --PENKVGCMLAAGQYYPNTCHPEDVWAAMKED-RENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKENTVD 307 (478)
T ss_pred --CCCeEEEEEeCCeeEeCCCCHHHHHHHHHHH-HHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcCCCC
Confidence 6899999999999999999999999999887 5578999999999999999999975 46889999999996 8999
Q ss_pred eeeeecCcceeeecCCCCCCCCCCccccCccceeeeccCCccCCCCCCCCCCcccChHHHHHHHHHHHHHcCCCeEEEee
Q 036046 365 FIGLNYYTTNYAKSIPMNSNGPPVSVTADQFVDFTVERDGVLIGPEAEGSGYIYIYPKGMQQVLEYVKNNYQNPAIYITE 444 (538)
Q Consensus 365 FiGiNyY~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~~w~~i~P~GL~~~L~~l~~~Y~~pPI~ITE 444 (538)
|||||||++.+|+...... +.. .... .....+ +..+.+ +++| +|+|+||+++|++++++|++ ||||||
T Consensus 308 FlGiNyYt~~~v~~~~~~~----~~~--~~~~-~~~~~~--p~~~~~-~~gw-~i~P~Gl~~~l~~~~~~Y~~-Pi~ItE 375 (478)
T PRK09593 308 FISFSYYSSRVASGDPKVN----EKT--AGNI-FASLKN--PYLKAS-EWGW-QIDPLGLRITLNTIWDRYQK-PMFIVE 375 (478)
T ss_pred EEEEecccCcccccCCCCC----CCC--CCCc-cccccC--CCcccC-CCCC-EECHHHHHHHHHHHHHHcCC-CEEEEc
Confidence 9999999999997532110 000 0000 000000 222344 7889 59999999999999999997 699999
Q ss_pred cCccccCCCCcCcCcccChhhhHHHHHHHHHHHHHHHH-cCCCEEEEEeccCCCcccccCC-CCCccceEEEeCCC----
Q 036046 445 NGVTEQRNDNLTLDVALKDEHRVDFVLGHLYYLHEAIK-NGVNVKGYFYWSAFDDFEWGIG-YLPRFGLYFIDYNN---- 518 (538)
Q Consensus 445 NG~~~~~~~~~~~~~~i~D~~Ri~yl~~hL~~~~kAi~-dGv~v~GY~~WSl~Dn~EW~~G-y~~RfGL~~VD~~~---- 518 (538)
||++..++ .+.+|.++|++||+||++||++|++||+ |||||+|||+|||+|||||..| |++|||||+||+++
T Consensus 376 NG~~~~d~--~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~G~y~~RfGl~~VD~~~~~~~ 453 (478)
T PRK09593 376 NGLGAVDK--PDENGYVEDDYRIDYLAAHIKAMRDAINEDGVELLGYTTWGCIDLVSAGTGEMKKRYGFIYVDRDNEGKG 453 (478)
T ss_pred CCCCCCCC--CCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHhhcccCCCccCeeceEEECCCCCCCc
Confidence 99998764 3456789999999999999999999995 9999999999999999999999 99999999999986
Q ss_pred CCccccChhHHHHHHHHhc
Q 036046 519 NLTRIPKESAKWVRDFLEG 537 (538)
Q Consensus 519 ~~~R~pK~S~~~y~~ii~~ 537 (538)
+++|+||+|++||+++|++
T Consensus 454 ~~~R~pK~S~~wy~~ii~~ 472 (478)
T PRK09593 454 TLKRSKKKSFDWYKKVIAS 472 (478)
T ss_pred ccceecccHHHHHHHHHHh
Confidence 4799999999999999975
No 11
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=3.2e-125 Score=1017.09 Aligned_cols=446 Identities=28% Similarity=0.520 Sum_probs=386.1
Q ss_pred cccCCCCcccccccccccccCCCcCCCCCcCcceeecc---cccCCccc----CC--CCCcccchhhhchHHHHHHHHHh
Q 036046 62 KRSNFPANFSFGASTSAAQIEGATTEDGKGPSIWDDFI---ERYPGKVM----NG--NDLITAIDSYRRYKEDMKAVKEL 132 (538)
Q Consensus 62 ~~~~fP~~FlwG~atsa~QvEG~~~~dgk~~s~WD~~~---~~~~~~~~----~~--~~~~~a~d~Y~~y~eDi~lm~~l 132 (538)
++.+||++|+||+|||||||||++++||||+|+||+|+ +..|+++. ++ .++++||||||||+|||+|||+|
T Consensus 2 ~~~~FP~~FlwG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~el 81 (477)
T PRK15014 2 KKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAEM 81 (477)
T ss_pred CcCCCCCCCEEeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHHc
Confidence 45679999999999999999999999999999999998 42345441 23 26789999999999999999999
Q ss_pred CCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCCCCchhHHHHHHHHH
Q 036046 133 GVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGPLNRSFVDDFKDYAE 212 (538)
Q Consensus 133 G~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~ 212 (538)
|+++|||||+||||+|+|. .+.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||+
T Consensus 82 G~~~yRfSIsWsRI~P~G~-~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~ 160 (477)
T PRK15014 82 GFKCFRTSIAWTRIFPKGD-EAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAE 160 (477)
T ss_pred CCCEEEecccceeeccCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHH
Confidence 9999999999999999984 256999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCccceEEeeccchhh-----hhccccc-CcC-CCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 036046 213 ICFKSFGDRVKNWMTINEPLIA-----SKYGYES-GTA-APGRCSDRNNCPAGNSSTEPYIASHNFLLAHAAAFRLYEQK 285 (538)
Q Consensus 213 ~~~~~fgd~V~~W~t~NEp~~~-----~~~gy~~-G~~-pPg~~~~~~~~~~g~~~~~~~~~~h~lllAHa~A~~~~r~~ 285 (538)
+||++|||+|++|+|||||+++ +..||.. |.+ ||+... ..+.|+++||+++|||+||+++|+.
T Consensus 161 ~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~~----------~~~~~~~~h~~llAHa~A~~~~~~~ 230 (477)
T PRK15014 161 VVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHENP----------EETMYQVLHHQFVASALAVKAARRI 230 (477)
T ss_pred HHHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCch----------hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999987 6678874 665 454211 2568999999999999999999997
Q ss_pred hccCCCCeEEEeecCceeecCCCCHHHHHHHHHHHHHhhcccccceeecccchHHHHHhhccC--CCCCHHHHHHh-cCC
Q 036046 286 FRAKQGGQIGLSLVSQFYEPLSNSSDDKAAAERALDFQLGWYLNPLVYGDYPKIMRKLARNRL--PTFTAEEKKLV-KGA 362 (538)
Q Consensus 286 ~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dpi~~G~YP~~m~~~l~~~l--p~ft~ed~~~i-kgs 362 (538)
. ++++||++++..+++|.+++|+|++||++++. ...+|+||+++|+||+.|++.++++. |.++++|+++| +++
T Consensus 231 ~---~~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~-~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~~~ 306 (477)
T PRK15014 231 N---PEMKVGCMLAMVPLYPYSCNPDDVMFAQESMR-ERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREGT 306 (477)
T ss_pred C---CCCeEEEEEeCceeccCCCCHHHHHHHHHHHH-hcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhcCC
Confidence 5 68999999999999999999999999998773 22359999999999999999998764 78999999988 589
Q ss_pred cceeeeecCcceeeecCCCCCCCCCCccccCccceeeeccCCccCCCCCCCCCCcccChHHHHHHHHHHHHHcCCCeEEE
Q 036046 363 FDFIGLNYYTTNYAKSIPMNSNGPPVSVTADQFVDFTVERDGVLIGPEAEGSGYIYIYPKGMQQVLEYVKNNYQNPAIYI 442 (538)
Q Consensus 363 ~DFiGiNyY~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~~w~~i~P~GL~~~L~~l~~~Y~~pPI~I 442 (538)
+||||||||++.+|+........ .+.+. ....+ +..+.+ +++| +|+|+||+.+|++++++|++ ||||
T Consensus 307 ~DFlGiNyYt~~~v~~~~~~~~~-~~~~~-------~~~~~--~~~~~~-~~gw-~i~P~Gl~~~l~~~~~~Y~~-Pi~I 373 (477)
T PRK15014 307 CDYLGFSYYMTNAVKAEGGTGDA-ISGFE-------GSVPN--PYVKAS-DWGW-QIDPVGLRYALCELYERYQK-PLFI 373 (477)
T ss_pred CCEEEEcceeCeeeccCCCCCCC-ccccc-------cccCC--CCcccC-CCCC-ccCcHHHHHHHHHHHHhcCC-CEEE
Confidence 99999999999999753210000 00000 00011 112234 6889 59999999999999999997 6999
Q ss_pred eecCccccCCCCcCcCcccChhhhHHHHHHHHHHHHHHHH-cCCCEEEEEeccCCCcccccCC-CCCccceEEEeCCC--
Q 036046 443 TENGVTEQRNDNLTLDVALKDEHRVDFVLGHLYYLHEAIK-NGVNVKGYFYWSAFDDFEWGIG-YLPRFGLYFIDYNN-- 518 (538)
Q Consensus 443 TENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hL~~~~kAi~-dGv~v~GY~~WSl~Dn~EW~~G-y~~RfGL~~VD~~~-- 518 (538)
||||++..++ ++.+|+++|++||+||++||++|++||+ |||||+||++|||+|||||..| |++|||||+||+++
T Consensus 374 tENG~~~~d~--~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~GY~~WSl~DnfEw~~G~y~~RfGl~~VD~~~~~ 451 (477)
T PRK15014 374 VENGFGAYDK--VEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDDG 451 (477)
T ss_pred eCCCCCCCCC--cCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhcccCCCccCccceEEECCCCCC
Confidence 9999998764 3457889999999999999999999995 9999999999999999999999 99999999999986
Q ss_pred --CCccccChhHHHHHHHHhc
Q 036046 519 --NLTRIPKESAKWVRDFLEG 537 (538)
Q Consensus 519 --~~~R~pK~S~~~y~~ii~~ 537 (538)
+++|+||+|++||+++|++
T Consensus 452 ~~~~~R~pK~S~~wy~~ii~~ 472 (477)
T PRK15014 452 TGDMSRSRKKSFNWYKEVIAS 472 (477)
T ss_pred CcccceecccHHHHHHHHHHh
Confidence 3699999999999999975
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=1.2e-124 Score=1010.99 Aligned_cols=443 Identities=29% Similarity=0.502 Sum_probs=391.0
Q ss_pred CCCCcccccccccccccCCCcCCCCCcCcceeecccccCCccc------------CCC--CCcccchhhhchHHHHHHHH
Q 036046 65 NFPANFSFGASTSAAQIEGATTEDGKGPSIWDDFIERYPGKVM------------NGN--DLITAIDSYRRYKEDMKAVK 130 (538)
Q Consensus 65 ~fP~~FlwG~atsa~QvEG~~~~dgk~~s~WD~~~~~~~~~~~------------~~~--~~~~a~d~Y~~y~eDi~lm~ 130 (538)
+||++|+||+|||||||||++++||||+|+||+|++ .++++. ++. ++++||||||||+|||+||+
T Consensus 3 ~FP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~ 81 (474)
T PRK09852 3 VFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPH-GEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMA 81 (474)
T ss_pred CCCCCCEEeccchHhhcCCCcCCCCCCCchhhcccc-CCCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHH
Confidence 599999999999999999999999999999999988 356542 222 67899999999999999999
Q ss_pred HhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCCCCchhHHHHHHH
Q 036046 131 ELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGPLNRSFVDDFKDY 210 (538)
Q Consensus 131 ~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~y 210 (538)
+||+++|||||+|+||+|+|. .+.+|++||+||+++|++|+++||+|||||+|||+|+||+++||||+|++++++|++|
T Consensus 82 ~lG~~~yR~si~WsRi~P~g~-~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~y 160 (474)
T PRK09852 82 EMGFKVFRTSIAWSRLFPQGD-ELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRY 160 (474)
T ss_pred HcCCCeEEeeceeeeeeeCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHH
Confidence 999999999999999999984 2568999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCccceEEeeccchhhhhcccc-cCc-CCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcc
Q 036046 211 AEICFKSFGDRVKNWMTINEPLIASKYGYE-SGT-AAPGRCSDRNNCPAGNSSTEPYIASHNFLLAHAAAFRLYEQKFRA 288 (538)
Q Consensus 211 a~~~~~~fgd~V~~W~t~NEp~~~~~~gy~-~G~-~pPg~~~~~~~~~~g~~~~~~~~~~h~lllAHa~A~~~~r~~~~~ 288 (538)
|++||++|||+|++|+|||||++++..||. .|. +|||... ....|+++||+++|||+||+++|+..
T Consensus 161 a~~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~----------~~~~~~~~hn~llAHa~A~~~~~~~~-- 228 (474)
T PRK09852 161 ARTCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQ----------DQVKYQAAHHELVASALATKIAHEVN-- 228 (474)
T ss_pred HHHHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCc----------hHhHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 999999999999999999999999999996 665 5887532 25689999999999999999999875
Q ss_pred CCCCeEEEeecCceeecCCCCHHHHHHHHHHHHHhhcccccceeecccchHHHHHhhcc--CCCCCHHHHHHhcCCccee
Q 036046 289 KQGGQIGLSLVSQFYEPLSNSSDDKAAAERALDFQLGWYLNPLVYGDYPKIMRKLARNR--LPTFTAEEKKLVKGAFDFI 366 (538)
Q Consensus 289 ~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dpi~~G~YP~~m~~~l~~~--lp~ft~ed~~~ikgs~DFi 366 (538)
++++||++++..+++|++++++|++||++++ +.+.||+||+++|+||+.|++.++++ +|.|+++|+++|++++|||
T Consensus 229 -~~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~-~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFl 306 (474)
T PRK09852 229 -PQNQVGCMLAGGNFYPYSCKPEDVWAALEKD-RENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVDFV 306 (474)
T ss_pred -CCCeEEEEEeCCeeeeCCCCHHHHHHHHHHH-HHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEE
Confidence 5899999999999999999999999998877 55789999999999999999999864 7999999999999999999
Q ss_pred eeecCcceeeecCCCCCCCCCCccccCccceeeeccCCccCCCCCCCCCCcccChHHHHHHHHHHHHHcCCCeEEEeecC
Q 036046 367 GLNYYTTNYAKSIPMNSNGPPVSVTADQFVDFTVERDGVLIGPEAEGSGYIYIYPKGMQQVLEYVKNNYQNPAIYITENG 446 (538)
Q Consensus 367 GiNyY~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~~w~~i~P~GL~~~L~~l~~~Y~~pPI~ITENG 446 (538)
|||||++.+|+...... ... .+..... .. .+..+.+ +++| +|+|+||+++|++++++|++ ||||||||
T Consensus 307 GiNyYt~~~v~~~~~~~---~~~--~~~~~~~--~~--~p~~~~~-~~gw-~i~P~Gl~~~l~~~~~~Y~~-Pi~ItENG 374 (474)
T PRK09852 307 SFSYYASRCASAEMNAN---NSS--AANVVKS--LR--NPYLQVS-DWGW-GIDPLGLRITMNMMYDRYQK-PLFLVENG 374 (474)
T ss_pred EEccccCeecccCCCCC---CCC--cCCceec--cc--CCCcccC-CCCC-eeChHHHHHHHHHHHHhcCC-CEEEeCCC
Confidence 99999999997532100 000 0000000 01 1222345 7889 59999999999999999997 59999999
Q ss_pred ccccCCCCcCcCcccChhhhHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCcccccCC-CCCccceEEEeCCC----CCc
Q 036046 447 VTEQRNDNLTLDVALKDEHRVDFVLGHLYYLHEAIKNGVNVKGYFYWSAFDDFEWGIG-YLPRFGLYFIDYNN----NLT 521 (538)
Q Consensus 447 ~~~~~~~~~~~~~~i~D~~Ri~yl~~hL~~~~kAi~dGv~v~GY~~WSl~Dn~EW~~G-y~~RfGL~~VD~~~----~~~ 521 (538)
++..++ .+.++.++|++||+||++||++|++||++||||+|||+|||+|||||..| |++|||||+||+++ +++
T Consensus 375 ~~~~d~--~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGLv~VD~~~~~~~t~~ 452 (474)
T PRK09852 375 LGAKDE--IAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWGCIDLVSASTGEMSKRYGFVYVDRDDAGNGTLT 452 (474)
T ss_pred CCCCCC--cCCCCccCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccccccCCCccceeeeEEECCCCCCCcccc
Confidence 998764 34567899999999999999999999999999999999999999999999 99999999999986 479
Q ss_pred cccChhHHHHHHHHhc
Q 036046 522 RIPKESAKWVRDFLEG 537 (538)
Q Consensus 522 R~pK~S~~~y~~ii~~ 537 (538)
|+||+|++||+++|++
T Consensus 453 R~pK~S~~wy~~ii~~ 468 (474)
T PRK09852 453 RTRKKSFWWYKKVIAS 468 (474)
T ss_pred eecccHHHHHHHHHHh
Confidence 9999999999999975
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=1.3e-121 Score=980.62 Aligned_cols=427 Identities=43% Similarity=0.783 Sum_probs=391.8
Q ss_pred CCCcccccccccccccCCCcCCCCCcCcceeecccccCCcccCCCCCcccchhhhchHHHHHHHHHhCCCEEEecccccc
Q 036046 66 FPANFSFGASTSAAQIEGATTEDGKGPSIWDDFIERYPGKVMNGNDLITAIDSYRRYKEDMKAVKELGVDSYRFSISWTR 145 (538)
Q Consensus 66 fP~~FlwG~atsa~QvEG~~~~dgk~~s~WD~~~~~~~~~~~~~~~~~~a~d~Y~~y~eDi~lm~~lG~~~~Rfsi~Wsr 145 (538)
||++|+||+|||||||||+++++|||+|+||++.+ .++++.++.++++||||||+|+|||++||+||+++|||||+|+|
T Consensus 1 fp~~FlwG~atsa~Q~EG~~~~~gkg~s~wd~~~~-~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsr 79 (427)
T TIGR03356 1 FPKDFLWGVATASYQIEGAVNEDGRGPSIWDTFSH-TPGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPR 79 (427)
T ss_pred CCCCCEEeeechHHhhCCCcCCCCCccchhheecc-CCCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhh
Confidence 89999999999999999999999999999999988 47777677789999999999999999999999999999999999
Q ss_pred cccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCCCCchhHHHHHHHHHHHHHHhCCccceE
Q 036046 146 ILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGPLNRSFVDDFKDYAEICFKSFGDRVKNW 225 (538)
Q Consensus 146 i~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fgd~V~~W 225 (538)
|+|+| .|.+|+++++||+++|++|+++||+|||||+|||+|+||+++ |||.|+++++.|++||+.||++|||+|++|
T Consensus 80 i~p~g--~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w 156 (427)
T TIGR03356 80 IFPEG--TGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHW 156 (427)
T ss_pred cccCC--CCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEE
Confidence 99997 388999999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred EeeccchhhhhcccccCcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEeecCceeec
Q 036046 226 MTINEPLIASKYGYESGTAAPGRCSDRNNCPAGNSSTEPYIASHNFLLAHAAAFRLYEQKFRAKQGGQIGLSLVSQFYEP 305 (538)
Q Consensus 226 ~t~NEp~~~~~~gy~~G~~pPg~~~~~~~~~~g~~~~~~~~~~h~lllAHa~A~~~~r~~~~~~~~g~IGi~~~~~~~~P 305 (538)
+|+|||++++..||..|.+||+.++. .+.++++||+++|||+|+++||++. ++++||++++..+++|
T Consensus 157 ~t~NEp~~~~~~~y~~G~~~P~~~~~----------~~~~~~~hnll~Aha~A~~~~~~~~---~~~~IGi~~~~~~~~P 223 (427)
T TIGR03356 157 ITLNEPWCSAFLGYGLGVHAPGLRDL----------RAALQAAHHLLLAHGLAVQALRANG---PGAQVGIVLNLTPVYP 223 (427)
T ss_pred EEecCcceecccchhhccCCCCCccH----------HHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCCeeee
Confidence 99999999999999999999986542 4579999999999999999999976 5899999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcccccceeecccchHHHHHhhccCCCCCHHHHHHhcCCcceeeeecCcceeeecCCCCCCC
Q 036046 306 LSNSSDDKAAAERALDFQLGWYLNPLVYGDYPKIMRKLARNRLPTFTAEEKKLVKGAFDFIGLNYYTTNYAKSIPMNSNG 385 (538)
Q Consensus 306 ~~~~~~D~~aa~~~~~~~~~~f~dpi~~G~YP~~m~~~l~~~lp~ft~ed~~~ikgs~DFiGiNyY~~~~v~~~~~~~~~ 385 (538)
.+++++|+.||++++++.++||+||++.|+||+.|++.++ .+|.|+++|++++++++||||||||++.+|+......
T Consensus 224 ~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~-~~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~~~-- 300 (427)
T TIGR03356 224 ASDSPEDVAAARRADGLLNRWFLDPLLKGRYPEDLLEYLG-DAPFVQDGDLETIAQPLDFLGINYYTRSVVAADPGTG-- 300 (427)
T ss_pred CCCCHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHHhc-cCCCCCHHHHHHhcCCCCEEEEeccccceeccCCCCC--
Confidence 9999999999999999999999999999999999999997 4799999999999999999999999999997532110
Q ss_pred CCCccccCccceeeeccCCccCCCCCCCCCCcccChHHHHHHHHHHHHHcCCCeEEEeecCccccCCCCcCcCcccChhh
Q 036046 386 PPVSVTADQFVDFTVERDGVLIGPEAEGSGYIYIYPKGMQQVLEYVKNNYQNPAIYITENGVTEQRNDNLTLDVALKDEH 465 (538)
Q Consensus 386 ~~~~~~~d~~~~~~~~~~g~~~~~~~~~~~w~~i~P~GL~~~L~~l~~~Y~~pPI~ITENG~~~~~~~~~~~~~~i~D~~ 465 (538)
... . .. .+..+.+ +++| +|+|+||+++|+++++||++|||||||||++..++ .+ +|+++|++
T Consensus 301 --~~~---~------~~--~~~~~~~-~~gw-~i~P~Gl~~~L~~~~~rY~~ppi~ITENG~~~~d~--~~-~g~~~D~~ 362 (427)
T TIGR03356 301 --AGF---V------EV--PEGVPKT-AMGW-EVYPEGLYDLLLRLKEDYPGPPIYITENGAAFDDE--VT-DGEVHDPE 362 (427)
T ss_pred --CCc---c------cc--CCCCCcC-CCCC-eechHHHHHHHHHHHHhcCCCCEEEeCCCCCcCCC--Cc-CCCcCCHH
Confidence 000 0 00 0112445 6889 69999999999999999999899999999998764 23 67899999
Q ss_pred hHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCcccccCCCCCccceEEEeCCCCCccccChhHHHH
Q 036046 466 RVDFVLGHLYYLHEAIKNGVNVKGYFYWSAFDDFEWGIGYLPRFGLYFIDYNNNLTRIPKESAKWV 531 (538)
Q Consensus 466 Ri~yl~~hL~~~~kAi~dGv~v~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~~~~~R~pK~S~~~y 531 (538)
||+||++||++|++||+|||||+||++|||+|||||..||++|||||+||++ |++|+||+|++||
T Consensus 363 Ri~yl~~hl~~~~~Ai~dGv~v~GY~~Wsl~Dn~ew~~gy~~rfGl~~VD~~-~~~R~~K~S~~wy 427 (427)
T TIGR03356 363 RIAYLRDHLAALARAIEEGVDVRGYFVWSLLDNFEWAEGYSKRFGLVHVDYE-TQKRTPKDSAKWY 427 (427)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEecccccccchhcccccccceEEECCC-CCcccccceeeeC
Confidence 9999999999999999999999999999999999999999999999999999 5999999999997
No 14
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.61 E-value=1.4e-13 Score=138.45 Aligned_cols=250 Identities=16% Similarity=0.191 Sum_probs=161.6
Q ss_pred ccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCE--EEEEecCCCCchHHHHhhCCCCCchhHHHHHHHHHHHHHHh
Q 036046 141 ISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIK--PFVTIFHFDSPQGLQEKYGGPLNRSFVDDFKDYAEICFKSF 218 (538)
Q Consensus 141 i~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~--p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~f 218 (538)
+.|++++|++ |.+|+ +..+.+++.++++||+ ..+.++|...|.|+... + .++..+.+.+|++.+++||
T Consensus 1 ~kW~~~ep~~---G~~n~---~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~-~---~~~~~~~~~~~i~~v~~ry 70 (254)
T smart00633 1 MKWDSTEPSR---GQFNF---SGADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL-S---KETLLARLENHIKTVVGRY 70 (254)
T ss_pred CCcccccCCC---CccCh---HHHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC-C---HHHHHHHHHHHHHHHHHHh
Confidence 3699999998 99999 6678899999999999 45567888999998753 2 5678899999999999999
Q ss_pred CCccceEEeeccchhhhhcccccCcCCCCCCCCCCCCCCCCCCchhHHHH-HHHHHHHHHHHHHHHHHhccCCCCeEEEe
Q 036046 219 GDRVKNWMTINEPLIASKYGYESGTAAPGRCSDRNNCPAGNSSTEPYIAS-HNFLLAHAAAFRLYEQKFRAKQGGQIGLS 297 (538)
Q Consensus 219 gd~V~~W~t~NEp~~~~~~gy~~G~~pPg~~~~~~~~~~g~~~~~~~~~~-h~lllAHa~A~~~~r~~~~~~~~g~IGi~ 297 (538)
+++|..|-++|||...... |.+. ...+.+. ... -..|.++.|+.. ++.++-+
T Consensus 71 ~g~i~~wdV~NE~~~~~~~---------~~~~-----------~~w~~~~G~~~---i~~af~~ar~~~---P~a~l~~- 123 (254)
T smart00633 71 KGKIYAWDVVNEALHDNGS---------GLRR-----------SVWYQILGEDY---IEKAFRYAREAD---PDAKLFY- 123 (254)
T ss_pred CCcceEEEEeeecccCCCc---------cccc-----------chHHHhcChHH---HHHHHHHHHHhC---CCCEEEE-
Confidence 9999999999999752110 1110 0111111 111 124566667665 3555533
Q ss_pred ecCceeecCCCCHHHHHHHHHHHHHhhcccccceeecccchHHHHHhhccCCCCCHHHHHHhcCCcceeeeecCcceeee
Q 036046 298 LVSQFYEPLSNSSDDKAAAERALDFQLGWYLNPLVYGDYPKIMRKLARNRLPTFTAEEKKLVKGAFDFIGLNYYTTNYAK 377 (538)
Q Consensus 298 ~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dpi~~G~YP~~m~~~l~~~lp~ft~ed~~~ikgs~DFiGiNyY~~~~v~ 377 (538)
|--... +. .. ......++. + ++..-..++|-||++....
T Consensus 124 -Ndy~~~--~~-~~---k~~~~~~~v------------------~------------~l~~~g~~iDgiGlQ~H~~---- 162 (254)
T smart00633 124 -NDYNTE--EP-NA---KRQAIYELV------------------K------------KLKAKGVPIDGIGLQSHLS---- 162 (254)
T ss_pred -eccCCc--Cc-cH---HHHHHHHHH------------------H------------HHHHCCCccceeeeeeeec----
Confidence 311111 00 00 011111110 0 1111123478999953210
Q ss_pred cCCCCCCCCCCccccCccceeeeccCCccCCCCCCCCCCcccChHHHHHHHHHHHHHcCCCeEEEeecCccccCCCCcCc
Q 036046 378 SIPMNSNGPPVSVTADQFVDFTVERDGVLIGPEAEGSGYIYIYPKGMQQVLEYVKNNYQNPAIYITENGVTEQRNDNLTL 457 (538)
Q Consensus 378 ~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~~w~~i~P~GL~~~L~~l~~~Y~~pPI~ITENG~~~~~~~~~~~ 457 (538)
.. ...|..|...|+.+.+. +. ||+|||.++...++
T Consensus 163 ~~--------------------------------------~~~~~~~~~~l~~~~~~-g~-pi~iTE~dv~~~~~----- 197 (254)
T smart00633 163 LG--------------------------------------SPNIAEIRAALDRFASL-GL-EIQITELDISGYPN----- 197 (254)
T ss_pred CC--------------------------------------CCCHHHHHHHHHHHHHc-CC-ceEEEEeecCCCCc-----
Confidence 00 01245799999998765 65 79999999987531
Q ss_pred CcccChhhhHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCcccccCCCCCccceEEEeCCCCCccccChhHHH
Q 036046 458 DVALKDEHRVDFVLGHLYYLHEAIKNGVNVKGYFYWSAFDDFEWGIGYLPRFGLYFIDYNNNLTRIPKESAKW 530 (538)
Q Consensus 458 ~~~i~D~~Ri~yl~~hL~~~~kAi~dGv~v~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~~~~~R~pK~S~~~ 530 (538)
...+.+++++++..+.+ .. .|.|.++|.+.|..+|..+ .+.||+.=|+ +|||++++
T Consensus 198 -----~~~qA~~~~~~l~~~~~---~p-~v~gi~~Wg~~d~~~W~~~--~~~~L~d~~~------~~kpa~~~ 253 (254)
T smart00633 198 -----PQAQAADYEEVFKACLA---HP-AVTGVTVWGVTDKYSWLDG--GAPLLFDANY------QPKPAYWA 253 (254)
T ss_pred -----HHHHHHHHHHHHHHHHc---CC-CeeEEEEeCCccCCcccCC--CCceeECCCC------CCChhhhc
Confidence 25677788777776654 22 7899999999999999765 5678874333 58888765
No 15
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.32 E-value=3.5e-12 Score=135.22 Aligned_cols=109 Identities=25% Similarity=0.453 Sum_probs=89.7
Q ss_pred hchHHHHHHHHHhCCCEEEe-cccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCC-
Q 036046 120 RRYKEDMKAVKELGVDSYRF-SISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGG- 197 (538)
Q Consensus 120 ~~y~eDi~lm~~lG~~~~Rf-si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~gg- 197 (538)
..+++|+++|+++|+|++|+ .++|+++||++ |++|+ .++|++|+.+.++||++++.+.+...|.||.++|..
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~e---G~ydF---~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~ 83 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEE---GQYDF---SWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEI 83 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBT---TB------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCC
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCC---Ceeec---HHHHHHHHHHHhccCeEEEEecccccccchhhhcccc
Confidence 46899999999999999996 56999999999 99999 779999999999999999999999999999876421
Q ss_pred -------------------CCCchhHHHHHHHHHHHHHHhCCc--cceEEeeccchhh
Q 036046 198 -------------------PLNRSFVDDFKDYAEICFKSFGDR--VKNWMTINEPLIA 234 (538)
Q Consensus 198 -------------------w~~~~~~~~f~~ya~~~~~~fgd~--V~~W~t~NEp~~~ 234 (538)
..+|.+++.+.++++.++++|++. |..|.+.|||...
T Consensus 84 ~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 84 LPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp C-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred cccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 235678899999999999999974 8999999999753
No 16
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.12 E-value=2.4e-08 Score=103.62 Aligned_cols=251 Identities=20% Similarity=0.276 Sum_probs=142.5
Q ss_pred HHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecC---CCCchHHHHhhCCCC
Q 036046 123 KEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFH---FDSPQGLQEKYGGPL 199 (538)
Q Consensus 123 ~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H---~~~P~~l~~~~ggw~ 199 (538)
++=+++||+.|+|++|+-+ | +-|.. .|.-|. +.-.++..+.+++||+.+|++|- |.=|.--..+ .+|.
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~--~g~~~~---~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P-~aW~ 97 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYD--GGYNDL---EDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKP-AAWA 97 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TT--TTTTSH---HHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B---TTCT
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcc--cccCCH---HHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCC-ccCC
Confidence 4457999999999999977 4 34443 266666 78899999999999999999973 3334322222 5788
Q ss_pred C---chhHHHHHHHHHHHHHHhCC---ccceEEeeccchhhhhcccccCcCCCCCCCCCCCCCCCCCCchhHHHHHHHHH
Q 036046 200 N---RSFVDDFKDYAEICFKSFGD---RVKNWMTINEPLIASKYGYESGTAAPGRCSDRNNCPAGNSSTEPYIASHNFLL 273 (538)
Q Consensus 200 ~---~~~~~~f~~ya~~~~~~fgd---~V~~W~t~NEp~~~~~~gy~~G~~pPg~~~~~~~~~~g~~~~~~~~~~h~lll 273 (538)
+ .+..+.-.+|.+.+.+.+.+ .++++++=||.+.- . .||-|.. ..+.-.-.++.
T Consensus 98 ~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~G----m---lwp~g~~-------------~~~~~~a~ll~ 157 (332)
T PF07745_consen 98 NLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNG----M---LWPDGKP-------------SNWDNLAKLLN 157 (332)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGE----S---TBTTTCT-------------T-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCcccccc----c---cCcCCCc-------------cCHHHHHHHHH
Confidence 8 67778888999999888854 58999999998741 1 2444432 22334445666
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEeecCceeecCCCCHHHHHHHHHHHHHhhcccccceeecccchHHHHHhhccCCCCCH
Q 036046 274 AHAAAFRLYEQKFRAKQGGQIGLSLVSQFYEPLSNSSDDKAAAERALDFQLGWYLNPLVYGDYPKIMRKLARNRLPTFTA 353 (538)
Q Consensus 274 AHa~A~~~~r~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dpi~~G~YP~~m~~~l~~~lp~ft~ 353 (538)
|- ++++|+.. ++.+|.+.+... .|.... .||.+-+
T Consensus 158 ag---~~AVr~~~---p~~kV~lH~~~~---------~~~~~~--------~~~f~~l---------------------- 192 (332)
T PF07745_consen 158 AG---IKAVREVD---PNIKVMLHLANG---------GDNDLY--------RWFFDNL---------------------- 192 (332)
T ss_dssp HH---HHHHHTHS---STSEEEEEES-T---------TSHHHH--------HHHHHHH----------------------
T ss_pred HH---HHHHHhcC---CCCcEEEEECCC---------CchHHH--------HHHHHHH----------------------
Confidence 64 44455544 567776655431 111111 1222211
Q ss_pred HHHHHhcCCcceeeeecCcceeeecCCCCCCCCCCccccCccceeeeccCCccCCCCCCCCCCcccChHHHHHHHHHHHH
Q 036046 354 EEKKLVKGAFDFIGLNYYTTNYAKSIPMNSNGPPVSVTADQFVDFTVERDGVLIGPEAEGSGYIYIYPKGMQQVLEYVKN 433 (538)
Q Consensus 354 ed~~~ikgs~DFiGiNyY~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~~w~~i~P~GL~~~L~~l~~ 433 (538)
+.-....|.||++||.- | . -....|+..|+.+.+
T Consensus 193 ---~~~g~d~DviGlSyYP~----------------w--------------------------~-~~l~~l~~~l~~l~~ 226 (332)
T PF07745_consen 193 ---KAAGVDFDVIGLSYYPF----------------W--------------------------H-GTLEDLKNNLNDLAS 226 (332)
T ss_dssp ---HHTTGG-SEEEEEE-ST----------------T--------------------------S-T-HHHHHHHHHHHHH
T ss_pred ---HhcCCCcceEEEecCCC----------------C--------------------------c-chHHHHHHHHHHHHH
Confidence 11123569999999931 0 0 123579999999999
Q ss_pred HcCCCeEEEeecCccccCCC-CcCcCc----------ccChhhhHHHHHHHHHHHHHHHHc--CCCEEEEEeccCCCc
Q 036046 434 NYQNPAIYITENGVTEQRND-NLTLDV----------ALKDEHRVDFVLGHLYYLHEAIKN--GVNVKGYFYWSAFDD 498 (538)
Q Consensus 434 ~Y~~pPI~ITENG~~~~~~~-~~~~~~----------~i~D~~Ri~yl~~hL~~~~kAi~d--Gv~v~GY~~WSl~Dn 498 (538)
||++ ||+|+|.|++...+. +-..+. ...-+-..+|| ..+.+++.+ +-...|.|+|-..-.
T Consensus 227 ry~K-~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l----~~l~~~v~~~p~~~g~GvfYWeP~w~ 299 (332)
T PF07745_consen 227 RYGK-PVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFL----RDLINAVKNVPNGGGLGVFYWEPAWI 299 (332)
T ss_dssp HHT--EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHH----HHHHHHHHTS--TTEEEEEEE-TT-G
T ss_pred HhCC-eeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHH----HHHHHHHHHhccCCeEEEEeeccccc
Confidence 9987 799999998776211 000000 01122344444 555555554 679999999965443
No 17
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=99.10 E-value=2.7e-08 Score=103.45 Aligned_cols=273 Identities=20% Similarity=0.229 Sum_probs=162.3
Q ss_pred CCCEEEe--cccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEE--EEecCCCCchHHHHhhCCCCCch---hHH
Q 036046 133 GVDSYRF--SISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPF--VTIFHFDSPQGLQEKYGGPLNRS---FVD 205 (538)
Q Consensus 133 G~~~~Rf--si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~--vtL~H~~~P~~l~~~~ggw~~~~---~~~ 205 (538)
.+|..-. .+.|..++|.. |.+|+ +-.+++++.++++||++- .-++|--.|.|+... .-+...+ ..+
T Consensus 34 ~Fn~~t~eN~~Kw~~~e~~~---g~~~~---~~~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~~~~~~~~~ 106 (320)
T PF00331_consen 34 HFNSVTPENEMKWGSIEPEP---GRFNF---ESADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSPDEKEELRA 106 (320)
T ss_dssp H-SEEEESSTTSHHHHESBT---TBEE----HHHHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSBHHHHHHHH
T ss_pred hCCeeeeccccchhhhcCCC---CccCc---cchhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCcccHHHHHH
Confidence 3444444 47899999998 99999 568999999999999976 455688899999863 1233333 788
Q ss_pred HHHHHHHHHHHHhCC--ccceEEeeccchhhhhcccccCcCCCCCCCCCCCCCCCCCCchhHHHHH--HHHHHHHHHHHH
Q 036046 206 DFKDYAEICFKSFGD--RVKNWMTINEPLIASKYGYESGTAAPGRCSDRNNCPAGNSSTEPYIASH--NFLLAHAAAFRL 281 (538)
Q Consensus 206 ~f~~ya~~~~~~fgd--~V~~W~t~NEp~~~~~~gy~~G~~pPg~~~~~~~~~~g~~~~~~~~~~h--~lllAHa~A~~~ 281 (538)
...+|.+.+++||++ +|..|=++|||..... .+-+.++ ...++++= .+ ..|.+.
T Consensus 107 ~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~-------~~~~~r~-----------~~~~~~lG~~yi----~~aF~~ 164 (320)
T PF00331_consen 107 RLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDG-------NPGGLRD-----------SPWYDALGPDYI----ADAFRA 164 (320)
T ss_dssp HHHHHHHHHHHHTTTTTTESEEEEEES-B-TTS-------SSSSBCT-----------SHHHHHHTTCHH----HHHHHH
T ss_pred HHHHHHHHHHhHhccccceEEEEEeeecccCCC-------ccccccC-----------ChhhhcccHhHH----HHHHHH
Confidence 999999999999995 8999999999864321 0011111 22333221 22 234455
Q ss_pred HHHHhccCCCCeEEEeecCceeecCCCCHHHHHHHHHHHHHhhcccccceeecccchHHHHHhhccCCCCCHHHHHHhcC
Q 036046 282 YEQKFRAKQGGQIGLSLVSQFYEPLSNSSDDKAAAERALDFQLGWYLNPLVYGDYPKIMRKLARNRLPTFTAEEKKLVKG 361 (538)
Q Consensus 282 ~r~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dpi~~G~YP~~m~~~l~~~lp~ft~ed~~~ikg 361 (538)
-|+.. ++.+.=+ |-...+. + +++ ..+. .|.+.| ..-.-
T Consensus 165 A~~~~---P~a~L~~--NDy~~~~----~-----~k~-~~~~---------------~lv~~l------------~~~gv 202 (320)
T PF00331_consen 165 AREAD---PNAKLFY--NDYNIES----P-----AKR-DAYL---------------NLVKDL------------KARGV 202 (320)
T ss_dssp HHHHH---TTSEEEE--EESSTTS----T-----HHH-HHHH---------------HHHHHH------------HHTTH
T ss_pred HHHhC---CCcEEEe--ccccccc----h-----HHH-HHHH---------------HHHHHH------------HhCCC
Confidence 56655 3554433 2211111 1 111 0010 011111 10112
Q ss_pred CcceeeeecCcceeeecCCCCCCCCCCccccCccceeeeccCCccCCCCCCCCCCcccChHHHHHHHHHHHHHcCCCeEE
Q 036046 362 AFDFIGLNYYTTNYAKSIPMNSNGPPVSVTADQFVDFTVERDGVLIGPEAEGSGYIYIYPKGMQQVLEYVKNNYQNPAIY 441 (538)
Q Consensus 362 s~DFiGiNyY~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~~w~~i~P~GL~~~L~~l~~~Y~~pPI~ 441 (538)
++|=||++-.. .. .. . |..+...|+++.+ .+ .||.
T Consensus 203 pIdgIG~Q~H~----~~-------------------------------~~-------~-~~~i~~~l~~~~~-~G-l~i~ 237 (320)
T PF00331_consen 203 PIDGIGLQSHF----DA-------------------------------GY-------P-PEQIWNALDRFAS-LG-LPIH 237 (320)
T ss_dssp CS-EEEEEEEE----ET-------------------------------TS-------S-HHHHHHHHHHHHT-TT-SEEE
T ss_pred ccceechhhcc----CC-------------------------------CC-------C-HHHHHHHHHHHHH-cC-CceE
Confidence 47889886431 00 00 1 6789999999855 46 4899
Q ss_pred EeecCccccCCCCcCcCcccChhhhHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCcccccCCCCC-ccceEEEeCCCCC
Q 036046 442 ITENGVTEQRNDNLTLDVALKDEHRVDFVLGHLYYLHEAIKNGVNVKGYFYWSAFDDFEWGIGYLP-RFGLYFIDYNNNL 520 (538)
Q Consensus 442 ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hL~~~~kAi~dGv~v~GY~~WSl~Dn~EW~~Gy~~-RfGL~~VD~~~~~ 520 (538)
|||.-+...+... ..-.+..+.+++++.+..+.+.-.. .|.|.+.|.+.|+.+|-....+ +=+|+.=
T Consensus 238 ITElDv~~~~~~~----~~~~~~~qA~~~~~~~~~~~~~~~~--~v~git~Wg~~D~~sW~~~~~~~~~~lfd~------ 305 (320)
T PF00331_consen 238 ITELDVRDDDNPP----DAEEEEAQAEYYRDFLTACFSHPPA--AVEGITWWGFTDGYSWRPDTPPDRPLLFDE------ 305 (320)
T ss_dssp EEEEEEESSSTTS----CHHHHHHHHHHHHHHHHHHHHTTHC--TEEEEEESSSBTTGSTTGGHSEG--SSB-T------
T ss_pred EEeeeecCCCCCc----chHHHHHHHHHHHHHHHHHHhCCcc--CCCEEEEECCCCCCcccCCCCCCCCeeECC------
Confidence 9999988764210 0123567788888777666654322 8999999999999999766333 3355533
Q ss_pred ccccChhHHHHHH
Q 036046 521 TRIPKESAKWVRD 533 (538)
Q Consensus 521 ~R~pK~S~~~y~~ 533 (538)
.-+|||+++.+.+
T Consensus 306 ~~~~Kpa~~~~~~ 318 (320)
T PF00331_consen 306 DYQPKPAYDAIVD 318 (320)
T ss_dssp TSBB-HHHHHHHH
T ss_pred CcCCCHHHHHHHh
Confidence 3469999888765
No 18
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.07 E-value=2.7e-08 Score=112.02 Aligned_cols=264 Identities=18% Similarity=0.098 Sum_probs=152.3
Q ss_pred hchHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHH------
Q 036046 120 RRYKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQE------ 193 (538)
Q Consensus 120 ~~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~------ 193 (538)
..+..|+++||++|+|++|+| ..|.. .++++.|=+.||-++.-+.-+....|+..
T Consensus 313 ~~~~~d~~l~K~~G~N~vR~s-----h~p~~--------------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~ 373 (604)
T PRK10150 313 VLNVHDHNLMKWIGANSFRTS-----HYPYS--------------EEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGN 373 (604)
T ss_pred HHHHHHHHHHHHCCCCEEEec-----cCCCC--------------HHHHHHHHhcCcEEEEecccccccccccccccccc
Confidence 457899999999999999995 33433 35677888899987765543333222210
Q ss_pred -hhCCCC----CchhHHHHHHHHHHHHHHhCCc--cceEEeeccchhhhhcccccCcCCCCCCCCCCCCCCCCCCchhHH
Q 036046 194 -KYGGPL----NRSFVDDFKDYAEICFKSFGDR--VKNWMTINEPLIASKYGYESGTAAPGRCSDRNNCPAGNSSTEPYI 266 (538)
Q Consensus 194 -~~ggw~----~~~~~~~f~~ya~~~~~~fgd~--V~~W~t~NEp~~~~~~gy~~G~~pPg~~~~~~~~~~g~~~~~~~~ 266 (538)
....|. +++..+.+.+-++.+++++.++ |..|.+.||+..- .....
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~---------------------------~~~~~ 426 (604)
T PRK10150 374 KPKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPASR---------------------------EQGAR 426 (604)
T ss_pred cccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCcc---------------------------chhHH
Confidence 001222 3567888899999999999875 8899999996310 00001
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCeEEEeecCceeecCCCCHHHHHHHHHHHHHhhcccccceeecccchHHHHHhhc
Q 036046 267 ASHNFLLAHAAAFRLYEQKFRAKQGGQIGLSLVSQFYEPLSNSSDDKAAAERALDFQLGWYLNPLVYGDYPKIMRKLARN 346 (538)
Q Consensus 267 ~~h~lllAHa~A~~~~r~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dpi~~G~YP~~m~~~l~~ 346 (538)
. .+...++++|+..+ .-.|..+.+... .+
T Consensus 427 ~------~~~~l~~~~k~~Dp---tR~vt~~~~~~~-~~----------------------------------------- 455 (604)
T PRK10150 427 E------YFAPLAELTRKLDP---TRPVTCVNVMFA-TP----------------------------------------- 455 (604)
T ss_pred H------HHHHHHHHHHhhCC---CCceEEEecccC-Cc-----------------------------------------
Confidence 1 12234455566542 222332221100 00
Q ss_pred cCCCCCHHHHHHhcCCcceeeeecCcceeeecCCCCCCCCCCccccCccceeeeccCCccCCCCCCCCCCcccChHHHHH
Q 036046 347 RLPTFTAEEKKLVKGAFDFIGLNYYTTNYAKSIPMNSNGPPVSVTADQFVDFTVERDGVLIGPEAEGSGYIYIYPKGMQQ 426 (538)
Q Consensus 347 ~lp~ft~ed~~~ikgs~DFiGiNyY~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~~w~~i~P~GL~~ 426 (538)
. ...+....|++|+|.|...+..... . . .+ -..+..
T Consensus 456 -----~---~~~~~~~~Dv~~~N~Y~~wy~~~~~-------------~----------------~------~~-~~~~~~ 491 (604)
T PRK10150 456 -----D---TDTVSDLVDVLCLNRYYGWYVDSGD-------------L----------------E------TA-EKVLEK 491 (604)
T ss_pred -----c---cccccCcccEEEEcccceecCCCCC-------------H----------------H------HH-HHHHHH
Confidence 0 0001223599999988653321100 0 0 00 012444
Q ss_pred HHHHHHHHcCCCeEEEeecCccccCCCCcCcCcccChhhhHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCcccccCCC-
Q 036046 427 VLEYVKNNYQNPAIYITENGVTEQRNDNLTLDVALKDEHRVDFVLGHLYYLHEAIKNGVNVKGYFYWSAFDDFEWGIGY- 505 (538)
Q Consensus 427 ~L~~l~~~Y~~pPI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hL~~~~kAi~dGv~v~GY~~WSl~Dn~EW~~Gy- 505 (538)
.+....+.|+ .|++|||.|.+.........++.-..++...|+++|+..+. +-=.+.|-|+|.+.|- .+..|.
T Consensus 492 ~~~~~~~~~~-kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~----~~p~~~G~~iW~~~D~-~~~~g~~ 565 (604)
T PRK10150 492 ELLAWQEKLH-KPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFD----RVPAVVGEQVWNFADF-ATSQGIL 565 (604)
T ss_pred HHHHHHHhcC-CCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHh----cCCceEEEEEEeeecc-CCCCCCc
Confidence 5555556664 47999999965421100000112235677788887777544 3358999999999992 222221
Q ss_pred ---CCccceEEEeCCCCCccccChhHHHHHHHHh
Q 036046 506 ---LPRFGLYFIDYNNNLTRIPKESAKWVRDFLE 536 (538)
Q Consensus 506 ---~~RfGL~~VD~~~~~~R~pK~S~~~y~~ii~ 536 (538)
....||+. ..|+||++++.||++-+
T Consensus 566 ~~~g~~~Gl~~------~dr~~k~~~~~~k~~~~ 593 (604)
T PRK10150 566 RVGGNKKGIFT------RDRQPKSAAFLLKKRWT 593 (604)
T ss_pred ccCCCcceeEc------CCCCChHHHHHHHHHhh
Confidence 13568873 45789999999998764
No 19
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.05 E-value=5.9e-10 Score=112.20 Aligned_cols=109 Identities=22% Similarity=0.343 Sum_probs=90.9
Q ss_pred chHHHHHHHHHhCCCEEEecccccccc-cCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCCC
Q 036046 121 RYKEDMKAVKELGVDSYRFSISWTRIL-PNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGPL 199 (538)
Q Consensus 121 ~y~eDi~lm~~lG~~~~Rfsi~Wsri~-P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw~ 199 (538)
..++|++.|+++|+|++|+.|.|..++ |.+ .+.++...++.++++|+.+.++||.+||++|+. |.|.... ++..
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~--~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~ 96 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNP--GYNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYG 96 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTST--TTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTT
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCC--CccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-cccc
Confidence 579999999999999999999998888 565 357999999999999999999999999999885 6664332 2333
Q ss_pred -CchhHHHHHHHHHHHHHHhCC--ccceEEeeccchhh
Q 036046 200 -NRSFVDDFKDYAEICFKSFGD--RVKNWMTINEPLIA 234 (538)
Q Consensus 200 -~~~~~~~f~~ya~~~~~~fgd--~V~~W~t~NEp~~~ 234 (538)
.....+.|.++++.++++|++ .|..|-++|||...
T Consensus 97 ~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~ 134 (281)
T PF00150_consen 97 NNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGG 134 (281)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCST
T ss_pred cchhhHHHHHhhhhhhccccCCCCcEEEEEecCCcccc
Confidence 345678899999999999954 68899999999854
No 20
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.87 E-value=1e-07 Score=104.58 Aligned_cols=291 Identities=22% Similarity=0.357 Sum_probs=138.0
Q ss_pred chHHHHHHHH-HhCCCEEEec--c--ccccccc-CCCCCCC--CChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHH
Q 036046 121 RYKEDMKAVK-ELGVDSYRFS--I--SWTRILP-NGSLSGG--VNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQ 192 (538)
Q Consensus 121 ~y~eDi~lm~-~lG~~~~Rfs--i--~Wsri~P-~~~~~g~--~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~ 192 (538)
.+++.+..++ ++|++.+||- + ...-... ++ +|. +|+ .+.|+++|.|+++||+|+|.|-. +|.++.
T Consensus 40 ~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~--~~~~~Ynf---~~lD~i~D~l~~~g~~P~vel~f--~p~~~~ 112 (486)
T PF01229_consen 40 DWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDE--DGIPPYNF---TYLDQILDFLLENGLKPFVELGF--MPMALA 112 (486)
T ss_dssp HHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEET--TEEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGB
T ss_pred HHHHHHHHHHhccCceEEEEEeeccCchhhcccccc--CCCCcCCh---HHHHHHHHHHHHcCCEEEEEEEe--chhhhc
Confidence 3677777776 9999999985 2 2222222 22 132 799 88899999999999999999965 566654
Q ss_pred Hh------hCCCCC-chhHHHHHHHHHHH----HHHhCC-ccceE--EeeccchhhhhcccccCcCCCCCCCCCCCCCCC
Q 036046 193 EK------YGGPLN-RSFVDDFKDYAEIC----FKSFGD-RVKNW--MTINEPLIASKYGYESGTAAPGRCSDRNNCPAG 258 (538)
Q Consensus 193 ~~------~ggw~~-~~~~~~f~~ya~~~----~~~fgd-~V~~W--~t~NEp~~~~~~gy~~G~~pPg~~~~~~~~~~g 258 (538)
.. +.|+.+ |+-.+.+.++++.+ .+|||. .|..| .++|||++... |..|.
T Consensus 113 ~~~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f-------~~~~~---------- 175 (486)
T PF01229_consen 113 SGYQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDF-------WWDGT---------- 175 (486)
T ss_dssp SS--EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTT-------SGGG-----------
T ss_pred CCCCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcccc-------cCCCC----------
Confidence 32 122332 45556666665555 455553 57754 79999996421 11110
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEeecCceeecCCCCHHHHHHHHHHHHHhhcccccceeecccch
Q 036046 259 NSSTEPYIASHNFLLAHAAAFRLYEQKFRAKQGGQIGLSLVSQFYEPLSNSSDDKAAAERALDFQLGWYLNPLVYGDYPK 338 (538)
Q Consensus 259 ~~~~~~~~~~h~lllAHa~A~~~~r~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dpi~~G~YP~ 338 (538)
.+.|- .+. ..+++++|+.. +..+||-.-- .... . ..+. .|
T Consensus 176 ---~~ey~---~ly---~~~~~~iK~~~---p~~~vGGp~~-----~~~~-~---~~~~---~~---------------- 215 (486)
T PF01229_consen 176 ---PEEYF---ELY---DATARAIKAVD---PELKVGGPAF-----AWAY-D---EWCE---DF---------------- 215 (486)
T ss_dssp ---HHHHH---HHH---HHHHHHHHHH----TTSEEEEEEE-----ETT--T---HHHH---HH----------------
T ss_pred ---HHHHH---HHH---HHHHHHHHHhC---CCCcccCccc-----cccH-H---HHHH---HH----------------
Confidence 12222 232 33556667665 5788885410 0000 0 0111 11
Q ss_pred HHHHHhhccCCCCCHHHHHHhcCCcceeeeecCcceeeecCCCCCCCCCCccccCccceeeeccCCccCCCCCCCCCCcc
Q 036046 339 IMRKLARNRLPTFTAEEKKLVKGAFDFIGLNYYTTNYAKSIPMNSNGPPVSVTADQFVDFTVERDGVLIGPEAEGSGYIY 418 (538)
Q Consensus 339 ~m~~~l~~~lp~ft~ed~~~ikgs~DFiGiNyY~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~~w~~ 418 (538)
++++.. -+-++|||.+..|......... +... . .. . +. ..
T Consensus 216 --l~~~~~------------~~~~~DfiS~H~y~~~~~~~~~------------~~~~---~-----~~---~-~~--~~ 255 (486)
T PF01229_consen 216 --LEFCKG------------NNCPLDFISFHSYGTDSAEDIN------------ENMY---E-----RI---E-DS--RR 255 (486)
T ss_dssp --HHHHHH------------CT---SEEEEEEE-BESESE-S------------S-EE---E-----EB------H--HH
T ss_pred --HHHHhc------------CCCCCCEEEEEecccccccccc------------hhHH---h-----hh---h-hH--HH
Confidence 111111 0124699999999754321110 0000 0 00 0 00 01
Q ss_pred cChHHHHHHHHHHHH-HcCCCeEEEeecCccccCCCCcCcCcccChh-hhHHHHHHHHHHHHHHHHcCCCEEEEEeccCC
Q 036046 419 IYPKGMQQVLEYVKN-NYQNPAIYITENGVTEQRNDNLTLDVALKDE-HRVDFVLGHLYYLHEAIKNGVNVKGYFYWSAF 496 (538)
Q Consensus 419 i~P~GL~~~L~~l~~-~Y~~pPI~ITENG~~~~~~~~~~~~~~i~D~-~Ri~yl~~hL~~~~kAi~dGv~v~GY~~WSl~ 496 (538)
+.| .+..+.+.+.+ .+++.|+++||-+...... ..++|+ ++..|+.+. ++. .+|..+-++.+|++.
T Consensus 256 ~~~-~~~~~~~~~~~e~~p~~~~~~tE~n~~~~~~------~~~~dt~~~aA~i~k~---lL~--~~~~~l~~~sywt~s 323 (486)
T PF01229_consen 256 LFP-ELKETRPIINDEADPNLPLYITEWNASISPR------NPQHDTCFKAAYIAKN---LLS--NDGAFLDSFSYWTFS 323 (486)
T ss_dssp HHH-HHHHHHHHHHTSSSTT--EEEEEEES-SSTT-------GGGGSHHHHHHHHH----HHH--HGGGT-SEEEES-SB
T ss_pred HHH-HHHHHHHHHhhccCCCCceeecccccccCCC------cchhccccchhhHHHH---HHH--hhhhhhhhhhccchh
Confidence 222 24444333433 3455689999965544321 234554 455554333 222 256667779999999
Q ss_pred CcccccCC----CCCccceEEEeCCCCCccccChhHHHHHH
Q 036046 497 DDFEWGIG----YLPRFGLYFIDYNNNLTRIPKESAKWVRD 533 (538)
Q Consensus 497 Dn~EW~~G----y~~RfGL~~VD~~~~~~R~pK~S~~~y~~ 533 (538)
|.||=..- +-.-|||+..+ .++|||++.|+-
T Consensus 324 D~Fee~~~~~~pf~ggfGLlt~~------gI~KPa~~A~~~ 358 (486)
T PF01229_consen 324 DRFEENGTPRKPFHGGFGLLTKL------GIPKPAYYAFQL 358 (486)
T ss_dssp S---TTSS-SSSSSS-S-SEECC------CEE-HHHHHHHH
T ss_pred hhhhccCCCCCceecchhhhhcc------CCCchHHHHHHH
Confidence 99983221 33358999754 589999988764
No 21
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.72 E-value=2.5e-08 Score=111.39 Aligned_cols=121 Identities=18% Similarity=0.312 Sum_probs=97.5
Q ss_pred hchHHHHHHHHHhCCCEEEecc-cccccccCCCCCCCCChhHHHHHHHH-HHHHHHcCCEEEEEe-cCCCCchHHHHhh-
Q 036046 120 RRYKEDMKAVKELGVDSYRFSI-SWTRILPNGSLSGGVNQMGIDHYNSL-IDELIKYGIKPFVTI-FHFDSPQGLQEKY- 195 (538)
Q Consensus 120 ~~y~eDi~lm~~lG~~~~Rfsi-~Wsri~P~~~~~g~~n~~gl~~y~~~-i~~l~~~gI~p~vtL-~H~~~P~~l~~~~- 195 (538)
..|++|+++||++|+|++|.++ +|++++|+. |++|+. +.|.. ++.+.+.||.+++.. .....|.|+.++|
T Consensus 30 ~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~e---G~fdf~---~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~P 103 (673)
T COG1874 30 ETWMDDLRKMKALGLNTVRIGYFAWNLHEPEE---GKFDFT---WLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYP 103 (673)
T ss_pred HHHHHHHHHHHHhCCCeeEeeeEEeeccCccc---cccCcc---cchHHHHHHHHhcCceEEEecCCCCCCchHHhcCCh
Confidence 3488999999999999999966 999999998 999995 77777 999999999999999 8899999999875
Q ss_pred --------------CCCCC-----chhHHHHHHHHHHHHHH-hCC--ccceEEeeccchh-hhhcccccCcCCC
Q 036046 196 --------------GGPLN-----RSFVDDFKDYAEICFKS-FGD--RVKNWMTINEPLI-ASKYGYESGTAAP 246 (538)
Q Consensus 196 --------------ggw~~-----~~~~~~f~~ya~~~~~~-fgd--~V~~W~t~NEp~~-~~~~gy~~G~~pP 246 (538)
|+|.+ +-..+.-..+.+.+.+| ||+ .|..|.+-||-.. .|++.|+.+.|++
T Consensus 104 eiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~~ 177 (673)
T COG1874 104 EILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAFRL 177 (673)
T ss_pred hheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHHHHHH
Confidence 45543 33333334444458888 877 4999999999877 5777777776663
No 22
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=98.71 E-value=4.3e-06 Score=84.93 Aligned_cols=274 Identities=17% Similarity=0.180 Sum_probs=159.5
Q ss_pred cccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEE-E-ecCCCCchHHHHhhCCCCCchhHHHHHHHHHHHHHH
Q 036046 140 SISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFV-T-IFHFDSPQGLQEKYGGPLNRSFVDDFKDYAEICFKS 217 (538)
Q Consensus 140 si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~v-t-L~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~ 217 (538)
-+.|.-|+|+. |.+|+++ -|.+.+-+++||+.--- | ++|--.|.||.. -.+..+...+...++...+++|
T Consensus 66 emKwe~i~p~~---G~f~Fe~---AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e~hI~tV~~r 137 (345)
T COG3693 66 EMKWEAIEPER---GRFNFEA---ADAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVEEHIKTVVGR 137 (345)
T ss_pred ccccccccCCC---CccCccc---hHHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHHHHHHHHHHh
Confidence 35799999976 9999955 68889999999997322 2 357778999863 3477889999999999999999
Q ss_pred hCCccceEEeeccchhhhhcccccCcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEe
Q 036046 218 FGDRVKNWMTINEPLIASKYGYESGTAAPGRCSDRNNCPAGNSSTEPYIASHNFLLAHAAAFRLYEQKFRAKQGGQIGLS 297 (538)
Q Consensus 218 fgd~V~~W~t~NEp~~~~~~gy~~G~~pPg~~~~~~~~~~g~~~~~~~~~~h~lllAHa~A~~~~r~~~~~~~~g~IGi~ 297 (538)
|.+.|..|=+.|||-- ...++-...|--+.. +.+ ++.+ |.++-|+.. ++++.=+.
T Consensus 138 Ykg~~~sWDVVNE~vd-d~g~~R~s~w~~~~~-----------gpd------~I~~----aF~~Aread---P~AkL~~N 192 (345)
T COG3693 138 YKGSVASWDVVNEAVD-DQGSLRRSAWYDGGT-----------GPD------YIKL----AFHIAREAD---PDAKLVIN 192 (345)
T ss_pred ccCceeEEEecccccC-CCchhhhhhhhccCC-----------ccH------HHHH----HHHHHHhhC---CCceEEee
Confidence 9999999999999853 222222111111100 012 2323 344445544 46655433
Q ss_pred ecCceeecCCCCHHHHHHHHHHHHHhhcccccceeecccchHHHHHhhccCCCCCHHHHHHhcC-CcceeeeecCcceee
Q 036046 298 LVSQFYEPLSNSSDDKAAAERALDFQLGWYLNPLVYGDYPKIMRKLARNRLPTFTAEEKKLVKG-AFDFIGLNYYTTNYA 376 (538)
Q Consensus 298 ~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dpi~~G~YP~~m~~~l~~~lp~ft~ed~~~ikg-s~DFiGiNyY~~~~v 376 (538)
--+ ...+| +..+. +. .|++.|. -|| ++|=||++-= +
T Consensus 193 DY~-----ie~~~----~kr~~--~~---------------nlI~~Lk-------------ekG~pIDgiG~QsH----~ 229 (345)
T COG3693 193 DYS-----IEGNP----AKRNY--VL---------------NLIEELK-------------EKGAPIDGIGIQSH----F 229 (345)
T ss_pred ccc-----ccCCh----HHHHH--HH---------------HHHHHHH-------------HCCCCccceeeeee----e
Confidence 221 11222 11110 10 0112111 134 3788888632 1
Q ss_pred ecCCCCCCCCCCccccCccceeeeccCCccCCCCCCCCCCcccChHHHHHHHHHHHHHcCCCeEEEeecCccccCCCCcC
Q 036046 377 KSIPMNSNGPPVSVTADQFVDFTVERDGVLIGPEAEGSGYIYIYPKGMQQVLEYVKNNYQNPAIYITENGVTEQRNDNLT 456 (538)
Q Consensus 377 ~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~~w~~i~P~GL~~~L~~l~~~Y~~pPI~ITENG~~~~~~~~~~ 456 (538)
+ .+| ..++-++..+....+. +. ||||||--|.... +
T Consensus 230 ~------------------------------------~~~--~~~~~~~~a~~~~~k~-Gl-~i~VTELD~~~~~-P--- 265 (345)
T COG3693 230 S------------------------------------GDG--PSIEKMRAALLKFSKL-GL-PIYVTELDMSDYT-P--- 265 (345)
T ss_pred c------------------------------------CCC--CCHHHHHHHHHHHhhc-CC-CceEEEeeeeccC-C---
Confidence 0 111 1122233344444444 65 7999999988743 1
Q ss_pred cCcccChhhhHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCcccccCCCCCccc-eEEEeCCCCCccccChhHHHHHHHH
Q 036046 457 LDVALKDEHRVDFVLGHLYYLHEAIKNGVNVKGYFYWSAFDDFEWGIGYLPRFG-LYFIDYNNNLTRIPKESAKWVRDFL 535 (538)
Q Consensus 457 ~~~~i~D~~Ri~yl~~hL~~~~kAi~dGv~v~GY~~WSl~Dn~EW~~Gy~~RfG-L~~VD~~~~~~R~pK~S~~~y~~ii 535 (538)
..+...+..+..+. ..+.-.......-.|.+.+.|.++|+++|..|..+|++ +=-.=|+ ..-+|||...+..+++
T Consensus 266 ~~~~p~~~~~~~~~--~~~~f~~~~~~~~~v~~it~WGi~D~ySWl~g~~~~~~~~rPl~~D--~n~~pKPa~~aI~e~l 341 (345)
T COG3693 266 DSGAPRLYLQKAAS--RAKAFLLLLLNPNQVKAITFWGITDRYSWLRGRDPRRDGLRPLLFD--DNYQPKPAYKAIAEVL 341 (345)
T ss_pred CCccHHHHHHHHHH--HHHHHHHHHhcccccceEEEeeeccCcccccCCccCcCCCCCcccC--CCCCcchHHHHHHHHh
Confidence 11122222232222 11122222346667999999999999999999888885 1111111 2346999999999887
Q ss_pred hc
Q 036046 536 EG 537 (538)
Q Consensus 536 ~~ 537 (538)
..
T Consensus 342 a~ 343 (345)
T COG3693 342 AP 343 (345)
T ss_pred cC
Confidence 64
No 23
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.16 E-value=0.0011 Score=66.78 Aligned_cols=256 Identities=18% Similarity=0.247 Sum_probs=141.6
Q ss_pred HHHHHHHHHhCCCEEEecc-cccccccCCCC-CCCCChhHHHHHHHHHHHHHHcCCEEEEEec---CCCCchHHHHhhCC
Q 036046 123 KEDMKAVKELGVDSYRFSI-SWTRILPNGSL-SGGVNQMGIDHYNSLIDELIKYGIKPFVTIF---HFDSPQGLQEKYGG 197 (538)
Q Consensus 123 ~eDi~lm~~lG~~~~Rfsi-~Wsri~P~~~~-~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~---H~~~P~~l~~~~gg 197 (538)
++=++.+|+.|+|.+|+-| .=++=.-.... .|.=|. +---++-++.+.+||++++..| ||.=|.--. +.-.
T Consensus 66 qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~---~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~-kPka 141 (403)
T COG3867 66 QDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDL---KKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQK-KPKA 141 (403)
T ss_pred HHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchH---HHHHHHHHHHHhcCcEEEeeccchhhccChhhcC-CcHH
Confidence 3347999999999999976 21111100000 122233 3345677788899999999987 566665432 2256
Q ss_pred CCCc---hhHHHHHHHHHHHHHHh---CCccceEEeeccchhhhhcccccCcCCCCCCCCCCCCCCCCCCchhHHHHHHH
Q 036046 198 PLNR---SFVDDFKDYAEICFKSF---GDRVKNWMTINEPLIASKYGYESGTAAPGRCSDRNNCPAGNSSTEPYIASHNF 271 (538)
Q Consensus 198 w~~~---~~~~~f~~ya~~~~~~f---gd~V~~W~t~NEp~~~~~~gy~~G~~pPg~~~~~~~~~~g~~~~~~~~~~h~l 271 (538)
|.+- ....+.-+|.+.+...+ |-..+..++=||-+- |+ .||-|.. .-+.-+-.+
T Consensus 142 W~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~----gf---lwp~Ge~-------------~~f~k~a~L 201 (403)
T COG3867 142 WENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNG----GF---LWPDGEG-------------RNFDKMAAL 201 (403)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCC----ce---eccCCCC-------------cChHHHHHH
Confidence 7762 33344455556665555 445788889999652 22 2554432 122333345
Q ss_pred HHHHHHHHHHHHHHhccCCCCeEEEeecCceeecCCCCHHHHHHHHHHHHHhhcccccceeecccchHHHHHhhccCCCC
Q 036046 272 LLAHAAAFRLYEQKFRAKQGGQIGLSLVSQFYEPLSNSSDDKAAAERALDFQLGWYLNPLVYGDYPKIMRKLARNRLPTF 351 (538)
Q Consensus 272 llAHa~A~~~~r~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dpi~~G~YP~~m~~~l~~~lp~f 351 (538)
+.| +++++|+.. ++-+|-+.+. .|..++. .+|+.|-+.
T Consensus 202 ~n~---g~~avrev~---p~ikv~lHla----~g~~n~~-------------y~~~fd~lt------------------- 239 (403)
T COG3867 202 LNA---GIRAVREVS---PTIKVALHLA----EGENNSL-------------YRWIFDELT------------------- 239 (403)
T ss_pred HHH---HhhhhhhcC---CCceEEEEec----CCCCCch-------------hhHHHHHHH-------------------
Confidence 554 566667643 4545544332 2333221 123322111
Q ss_pred CHHHHHHhcCCcceeeeecCcceeeecCCCCCCCCCCccccCccceeeeccCCccCCCCCCCCCCcccChHHHHHHHHHH
Q 036046 352 TAEEKKLVKGAFDFIGLNYYTTNYAKSIPMNSNGPPVSVTADQFVDFTVERDGVLIGPEAEGSGYIYIYPKGMQQVLEYV 431 (538)
Q Consensus 352 t~ed~~~ikgs~DFiGiNyY~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~~w~~i~P~GL~~~L~~l 431 (538)
.-.-.+|.||.+||.- +. |+. ..|...|..+
T Consensus 240 ------k~nvdfDVig~SyYpy--Wh------------------------------gtl-----------~nL~~nl~di 270 (403)
T COG3867 240 ------KRNVDFDVIGSSYYPY--WH------------------------------GTL-----------NNLTTNLNDI 270 (403)
T ss_pred ------HcCCCceEEeeecccc--cc------------------------------CcH-----------HHHHhHHHHH
Confidence 1123569999999941 11 001 1577889999
Q ss_pred HHHcCCCeEEEeecCccccCCC-----C-cCcCc-----ccChhhhHHHHHHHHHHHHHHHHcCCCEEEEEeccCC
Q 036046 432 KNNYQNPAIYITENGVTEQRND-----N-LTLDV-----ALKDEHRVDFVLGHLYYLHEAIKNGVNVKGYFYWSAF 496 (538)
Q Consensus 432 ~~~Y~~pPI~ITENG~~~~~~~-----~-~~~~~-----~i~D~~Ri~yl~~hL~~~~kAi~dGv~v~GY~~WSl~ 496 (538)
..||++ .+||.|.+.+..-+. + -+..+ .+.-+-+..++++-++.|... -+.+=.|.|+|-.-
T Consensus 271 a~rY~K-~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nv--p~~~GlGvFYWEp~ 343 (403)
T COG3867 271 ASRYHK-DVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNV--PKSNGLGVFYWEPA 343 (403)
T ss_pred HHHhcC-eEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhC--CCCCceEEEEeccc
Confidence 999998 599999987432110 0 00111 112234566777766665532 45566899999653
No 24
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=98.06 E-value=8.7e-05 Score=76.31 Aligned_cols=93 Identities=16% Similarity=0.198 Sum_probs=61.7
Q ss_pred hhhchHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhC-
Q 036046 118 SYRRYKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYG- 196 (538)
Q Consensus 118 ~Y~~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~g- 196 (538)
....++.|+++||+||+|++|++- .|.. .++++.|-+.||-++.-+.....-.|-. .+
T Consensus 34 ~~~~~~~d~~l~k~~G~N~iR~~h-----~p~~--------------~~~~~~cD~~GilV~~e~~~~~~~~~~~--~~~ 92 (298)
T PF02836_consen 34 PDEAMERDLELMKEMGFNAIRTHH-----YPPS--------------PRFYDLCDELGILVWQEIPLEGHGSWQD--FGN 92 (298)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEETT-----S--S--------------HHHHHHHHHHT-EEEEE-S-BSCTSSSS--TSC
T ss_pred CHHHHHHHHHHHHhcCcceEEccc-----ccCc--------------HHHHHHHhhcCCEEEEeccccccCcccc--CCc
Confidence 356899999999999999999842 2322 3456678889998887654322111110 01
Q ss_pred ---CCCCchhHHHHHHHHHHHHHHhCCc--cceEEeeccc
Q 036046 197 ---GPLNRSFVDDFKDYAEICFKSFGDR--VKNWMTINEP 231 (538)
Q Consensus 197 ---gw~~~~~~~~f~~ya~~~~~~fgd~--V~~W~t~NEp 231 (538)
--.+++..+.+.+-++.+++++.+. |..|.+.||+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 93 CNYDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TSCTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred cccCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 0135778888888899999999874 9999999998
No 25
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=97.83 E-value=6.3e-05 Score=80.91 Aligned_cols=111 Identities=17% Similarity=0.195 Sum_probs=81.4
Q ss_pred HHHHHHHHHhCCCEEEecccccccccCCCCC-CCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhh---CCC
Q 036046 123 KEDMKAVKELGVDSYRFSISWTRILPNGSLS-GGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKY---GGP 198 (538)
Q Consensus 123 ~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~-g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~---ggw 198 (538)
++|+..||++|+|++|+.+.|-.+.+.+... ...+...+.+.+++|+..++.||.+++.||+..-..--.+.- +.+
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 8999999999999999999855544432001 223244455899999999999999999999876333222220 111
Q ss_pred C-CchhHHHHHHHHHHHHHHhCC--ccceEEeeccchh
Q 036046 199 L-NRSFVDDFKDYAEICFKSFGD--RVKNWMTINEPLI 233 (538)
Q Consensus 199 ~-~~~~~~~f~~ya~~~~~~fgd--~V~~W~t~NEp~~ 233 (538)
. ....++++.+-.++++.+|++ .|....++|||+-
T Consensus 156 ~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 156 KEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred cccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 1 356779999999999999997 3666889999984
No 26
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.59 E-value=0.00025 Score=73.82 Aligned_cols=109 Identities=15% Similarity=0.177 Sum_probs=74.6
Q ss_pred chHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEec--------CCCCchHHH
Q 036046 121 RYKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIF--------HFDSPQGLQ 192 (538)
Q Consensus 121 ~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~--------H~~~P~~l~ 192 (538)
.|++-++.||++|+|++-+-|.|.-++|.+ |++|++|..=.+++|+.++++|+.+++-.= .-.+|.||.
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~~---g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~ 101 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPEE---GQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLL 101 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSBT---TB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGG
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCCC---CcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhh
Confidence 488889999999999999999999999998 999999988899999999999999776431 235999998
Q ss_pred HhhCCCC---CchhHHHHHHHHHHHHHHhCC-------ccceEEeeccch
Q 036046 193 EKYGGPL---NRSFVDDFKDYAEICFKSFGD-------RVKNWMTINEPL 232 (538)
Q Consensus 193 ~~~ggw~---~~~~~~~f~~ya~~~~~~fgd-------~V~~W~t~NEp~ 232 (538)
.+.+... ++.+.+.-.+|.+.+++...+ -|..-++=||..
T Consensus 102 ~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg 151 (319)
T PF01301_consen 102 RKPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYG 151 (319)
T ss_dssp GSTTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGG
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhC
Confidence 7633322 345556666666666666533 366778888854
No 27
>PLN03059 beta-galactosidase; Provisional
Probab=97.49 E-value=0.0013 Score=75.59 Aligned_cols=110 Identities=15% Similarity=0.101 Sum_probs=89.4
Q ss_pred hchHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCchHH
Q 036046 120 RRYKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTI--------FHFDSPQGL 191 (538)
Q Consensus 120 ~~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL--------~H~~~P~~l 191 (538)
..|++-++.||++|+|++-.=|.|.-+||.+ |++|++|..=..++|+.+.+.|+-+|+-. -.-.+|.||
T Consensus 59 ~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~---G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL 135 (840)
T PLN03059 59 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP---GNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWL 135 (840)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccCCCC---CeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhh
Confidence 3588889999999999999999999999998 99999999999999999999999877754 246889999
Q ss_pred HHhhCCCC----CchhHHHHHHHHHHHHHHhC---------CccceEEeeccchh
Q 036046 192 QEKYGGPL----NRSFVDDFKDYAEICFKSFG---------DRVKNWMTINEPLI 233 (538)
Q Consensus 192 ~~~~ggw~----~~~~~~~f~~ya~~~~~~fg---------d~V~~W~t~NEp~~ 233 (538)
... .|.. ++.+.++-.+|.+.+++... .-|...++=||-..
T Consensus 136 ~~~-~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs 189 (840)
T PLN03059 136 KYV-PGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGP 189 (840)
T ss_pred hcC-CCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccc
Confidence 864 4532 46677777777777777763 23778888899643
No 28
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.57 E-value=0.013 Score=61.87 Aligned_cols=103 Identities=22% Similarity=0.275 Sum_probs=58.4
Q ss_pred HHhCCCEEEecc---cc------------cccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHh
Q 036046 130 KELGVDSYRFSI---SW------------TRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEK 194 (538)
Q Consensus 130 ~~lG~~~~Rfsi---~W------------sri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~ 194 (538)
+.+|++.+||.| ++ .|.+--...+|.+|+.+=+-=+.+++..+++|+.-++ ++-+..|.|+...
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~-aFSNSPP~~MT~N 135 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFE-AFSNSPPWWMTKN 135 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EE-EE-SSS-GGGSSS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEE-EeecCCCHHHhcC
Confidence 458999999988 33 3432111124788886655566799999999999655 7888899988754
Q ss_pred h---CC-----CCCchhHHHHHHHHHHHHHHhCC---ccceEEeeccchh
Q 036046 195 Y---GG-----PLNRSFVDDFKDYAEICFKSFGD---RVKNWMTINEPLI 233 (538)
Q Consensus 195 ~---gg-----w~~~~~~~~f~~ya~~~~~~fgd---~V~~W~t~NEp~~ 233 (538)
- |+ =+.++..+.|++|-..|+++|.. .+++--++|||..
T Consensus 136 G~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~ 185 (384)
T PF14587_consen 136 GSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQW 185 (384)
T ss_dssp SSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS
T ss_pred CCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCC
Confidence 1 11 24578899999999999999933 5899999999983
No 29
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=96.43 E-value=0.0059 Score=64.76 Aligned_cols=106 Identities=23% Similarity=0.364 Sum_probs=81.0
Q ss_pred hhchHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEe-cC-----------CC
Q 036046 119 YRRYKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTI-FH-----------FD 186 (538)
Q Consensus 119 Y~~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL-~H-----------~~ 186 (538)
+...+.+++.||++|++.+-+.+=|.-+|+.++ +++|| ..|+++.+.+++.|++..+.| +| .-
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p--~~ydW---s~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~Ip 89 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEGP--QQYDW---SGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIP 89 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSST--TB------HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCC--CccCc---HHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCc
Confidence 447899999999999999999999999999973 89999 669999999999999987766 34 36
Q ss_pred CchHHHHh-----------hC--------CCCCchhHHHHHHHHHHHHHHhCCccceEEeeccch
Q 036046 187 SPQGLQEK-----------YG--------GPLNRSFVDDFKDYAEICFKSFGDRVKNWMTINEPL 232 (538)
Q Consensus 187 ~P~~l~~~-----------~g--------gw~~~~~~~~f~~ya~~~~~~fgd~V~~W~t~NEp~ 232 (538)
||.|+.+. .| -|....+++.+.+|-+-..++|.+.. -|+-|..
T Consensus 90 LP~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~---~~I~~I~ 151 (402)
T PF01373_consen 90 LPSWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL---STITEIQ 151 (402)
T ss_dssp S-HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH---TGEEEEE
T ss_pred CCHHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH---hhheEEE
Confidence 89998753 12 25555669999999999999998765 5666654
No 30
>PLN02161 beta-amylase
Probab=96.35 E-value=0.019 Score=62.20 Aligned_cols=111 Identities=22% Similarity=0.281 Sum_probs=85.8
Q ss_pred chhhhchHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEec-CC---------
Q 036046 116 IDSYRRYKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIF-HF--------- 185 (538)
Q Consensus 116 ~d~Y~~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~-H~--------- 185 (538)
..+....+.+++.+|++|++.+-+.+=|.-+|+.++ +++|| ..|+++++.+++.|++..+.|. |-
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p--~~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~ 187 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSP--LEFKW---SLYEELFRLISEAGLKLHVALCFHSNMHLFGGKG 187 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCC--CcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 467777899999999999999999999999999873 89999 6699999999999999777663 53
Q ss_pred --CCchHHHHh--------h---CCCC----------------CchhHHHHHHHHHHHHHHhCCccceEEeeccchh
Q 036046 186 --DSPQGLQEK--------Y---GGPL----------------NRSFVDDFKDYAEICFKSFGDRVKNWMTINEPLI 233 (538)
Q Consensus 186 --~~P~~l~~~--------~---ggw~----------------~~~~~~~f~~ya~~~~~~fgd~V~~W~t~NEp~~ 233 (538)
-||+|+.+. | .|-. .+--++.+.+|-+-..++|.+... -||.|..+
T Consensus 188 ~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~--~~I~eI~V 262 (531)
T PLN02161 188 GISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIG--NVIEEISI 262 (531)
T ss_pred CccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 499998853 0 1211 222346788888888888877654 36666543
No 31
>PLN02803 beta-amylase
Probab=96.28 E-value=0.02 Score=62.32 Aligned_cols=109 Identities=23% Similarity=0.330 Sum_probs=82.7
Q ss_pred hhhchHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEec-CC-----------
Q 036046 118 SYRRYKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIF-HF----------- 185 (538)
Q Consensus 118 ~Y~~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~-H~----------- 185 (538)
+-...+.+++.||++|++.+-+.+=|.-+|++++ +++|| ..|+++++.+++.|++..+.|. |-
T Consensus 105 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p--~~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~I 179 (548)
T PLN02803 105 KPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGP--MKYNW---EGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSI 179 (548)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCC--CcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccc
Confidence 3355788999999999999999999999999873 89999 6699999999999999777663 42
Q ss_pred CCchHHHHh--------h---CCCC----------------CchhHHHHHHHHHHHHHHhCCccceEEeeccchh
Q 036046 186 DSPQGLQEK--------Y---GGPL----------------NRSFVDDFKDYAEICFKSFGDRVKNWMTINEPLI 233 (538)
Q Consensus 186 ~~P~~l~~~--------~---ggw~----------------~~~~~~~f~~ya~~~~~~fgd~V~~W~t~NEp~~ 233 (538)
-||+|+.+. | .|-. .+--++.+.+|-+-.-++|.+... -||.|..+
T Consensus 180 pLP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~--~~I~eI~V 252 (548)
T PLN02803 180 PLPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLG--GVIAEIQV 252 (548)
T ss_pred cCCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 599998863 0 1211 222346677777777777777654 36777553
No 32
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.21 E-value=0.027 Score=56.26 Aligned_cols=66 Identities=23% Similarity=0.378 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHcCCCeEEEeecCccccCCCCcCcCcccChhhhHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCccc
Q 036046 423 GMQQVLEYVKNNYQNPAIYITENGVTEQRNDNLTLDVALKDEHRVDFVLGHLYYLHEAIKNGVNVKGYFYWSAFDDFE 500 (538)
Q Consensus 423 GL~~~L~~l~~~Y~~pPI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hL~~~~kAi~dGv~v~GY~~WSl~Dn~E 500 (538)
++...|..++++|++ ||.|||.|+..... .-.++...+|+++-+..+ +.---|.+|++.+.++..+
T Consensus 152 ~~~~~i~~~~~~~~k-PIWITEf~~~~~~~-------~~~~~~~~~fl~~~~~~l----d~~~~VeryawF~~~~~~~ 217 (239)
T PF11790_consen 152 DFKDYIDDLHNRYGK-PIWITEFGCWNGGS-------QGSDEQQASFLRQALPWL----DSQPYVERYAWFGFMNDGS 217 (239)
T ss_pred HHHHHHHHHHHHhCC-CEEEEeecccCCCC-------CCCHHHHHHHHHHHHHHH----hcCCCeeEEEecccccccC
Confidence 688889999999996 79999999875221 124566666665555554 4557899999999555433
No 33
>PLN00197 beta-amylase; Provisional
Probab=96.17 E-value=0.025 Score=61.81 Aligned_cols=109 Identities=24% Similarity=0.354 Sum_probs=83.4
Q ss_pred hhhchHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEec-CC-----------
Q 036046 118 SYRRYKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIF-HF----------- 185 (538)
Q Consensus 118 ~Y~~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~-H~----------- 185 (538)
+-...+.+++.+|++|++.+-+.+=|.-+|+.++ +++|| ..|+++++.+++.|++..+.|. |-
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p--~~YdW---sgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~I 199 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESP--GVYNW---GGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTI 199 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCC--CcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccc
Confidence 3345889999999999999999999999999873 89999 6699999999999999777663 42
Q ss_pred CCchHHHHh--------h---CCCCC----------------chhHHHHHHHHHHHHHHhCCccceEEeeccchh
Q 036046 186 DSPQGLQEK--------Y---GGPLN----------------RSFVDDFKDYAEICFKSFGDRVKNWMTINEPLI 233 (538)
Q Consensus 186 ~~P~~l~~~--------~---ggw~~----------------~~~~~~f~~ya~~~~~~fgd~V~~W~t~NEp~~ 233 (538)
-||+|+.+. | .|-.| +--++.+.+|-+-.-++|.+..+. ||.|..+
T Consensus 200 pLP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~~--~I~eI~V 272 (573)
T PLN00197 200 PLPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLGD--TIVEIQV 272 (573)
T ss_pred cCCHHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhcC--ceeEEEe
Confidence 599998763 0 12111 222678888888888888776553 6667543
No 34
>PLN02801 beta-amylase
Probab=96.03 E-value=0.041 Score=59.72 Aligned_cols=100 Identities=23% Similarity=0.420 Sum_probs=78.0
Q ss_pred hhhchHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEec-C-----------C
Q 036046 118 SYRRYKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIF-H-----------F 185 (538)
Q Consensus 118 ~Y~~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~-H-----------~ 185 (538)
+=...+.+++.+|++|++.+-+.+=|.-+|..++ +++|| ..|+++++.+++.|++..+.|. | .
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P--~~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~I 109 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGP--KQYDW---SAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNI 109 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCC--CccCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccc
Confidence 3345788999999999999999999999999873 89999 6699999999999999766653 4 3
Q ss_pred CCchHHHHh--------h---CC---------------CCC-chhHHHHHHHHHHHHHHhCCcc
Q 036046 186 DSPQGLQEK--------Y---GG---------------PLN-RSFVDDFKDYAEICFKSFGDRV 222 (538)
Q Consensus 186 ~~P~~l~~~--------~---gg---------------w~~-~~~~~~f~~ya~~~~~~fgd~V 222 (538)
-||+|+.+. | .| +.. +--++.+.+|-+-.-++|.+..
T Consensus 110 pLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l 173 (517)
T PLN02801 110 PIPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFL 173 (517)
T ss_pred cCCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 599998863 0 12 112 2235788888888888887754
No 35
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=95.81 E-value=0.17 Score=52.10 Aligned_cols=48 Identities=21% Similarity=0.360 Sum_probs=33.4
Q ss_pred chHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecC
Q 036046 121 RYKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFH 184 (538)
Q Consensus 121 ~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H 184 (538)
..+.||.+||+||+|+.|+= .+|... + .++-.+.|.++||-+++.|-.
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY--------------~vdp~~-n-Hd~CM~~~~~aGIYvi~Dl~~ 101 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVY--------------SVDPSK-N-HDECMSAFADAGIYVILDLNT 101 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES-----------------TTS----HHHHHHHHHTT-EEEEES-B
T ss_pred HHHHhHHHHHHcCCCEEEEE--------------EeCCCC-C-HHHHHHHHHhCCCEEEEecCC
Confidence 56999999999999999973 233222 1 477778899999999999943
No 36
>PLN02905 beta-amylase
Probab=95.70 E-value=0.069 Score=59.15 Aligned_cols=101 Identities=18% Similarity=0.279 Sum_probs=78.5
Q ss_pred chhhhchHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEec-CC---------
Q 036046 116 IDSYRRYKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIF-HF--------- 185 (538)
Q Consensus 116 ~d~Y~~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~-H~--------- 185 (538)
..+....+..++.||++|++.+-+.+=|.-+|+.++ +++|| ..|+++++.+++.|++..+.|. |-
T Consensus 282 l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP--~~YdW---sgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~ 356 (702)
T PLN02905 282 LADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAP--QEYNW---NGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDV 356 (702)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCC--CcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 456777899999999999999999999999999873 89999 6699999999999999777663 43
Q ss_pred --CCchHHHHh--------h---CCCCC----------------chhHHHHHHHHHHHHHHhCCc
Q 036046 186 --DSPQGLQEK--------Y---GGPLN----------------RSFVDDFKDYAEICFKSFGDR 221 (538)
Q Consensus 186 --~~P~~l~~~--------~---ggw~~----------------~~~~~~f~~ya~~~~~~fgd~ 221 (538)
-||+|+.+. | .|-.| +--++.+.+|-+-.-++|.+.
T Consensus 357 ~IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 421 (702)
T PLN02905 357 CIPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEF 421 (702)
T ss_pred cccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 699998863 0 12221 233467777777777777654
No 37
>PLN02705 beta-amylase
Probab=95.60 E-value=0.073 Score=58.81 Aligned_cols=100 Identities=19% Similarity=0.245 Sum_probs=77.2
Q ss_pred hhhhchHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEec-CC----------
Q 036046 117 DSYRRYKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIF-HF---------- 185 (538)
Q Consensus 117 d~Y~~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~-H~---------- 185 (538)
.+-...+.+++.||++||+.+-+.+=|.-+|..+. +++|| ..|+++++.+++.|++..+.|. |-
T Consensus 265 ~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P--~~YdW---sgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~ 339 (681)
T PLN02705 265 VDPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNP--QKYVW---SGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVM 339 (681)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCC--CcCCc---HHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCccc
Confidence 44566889999999999999999999999999873 89999 6699999999999999766663 42
Q ss_pred -CCchHHHHh--------h---CCCCC----------------chhHHHHHHHHHHHHHHhCCc
Q 036046 186 -DSPQGLQEK--------Y---GGPLN----------------RSFVDDFKDYAEICFKSFGDR 221 (538)
Q Consensus 186 -~~P~~l~~~--------~---ggw~~----------------~~~~~~f~~ya~~~~~~fgd~ 221 (538)
-||.|+.+. | .|-.| +--++.+.+|.+-.-++|.+.
T Consensus 340 IPLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 403 (681)
T PLN02705 340 ISLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDL 403 (681)
T ss_pred ccCCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 599998863 0 12111 223477777777777777664
No 38
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.37 E-value=0.094 Score=58.51 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=88.9
Q ss_pred chHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCchHHH
Q 036046 121 RYKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTI--------FHFDSPQGLQ 192 (538)
Q Consensus 121 ~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL--------~H~~~P~~l~ 192 (538)
.|++=|+.||++|+|+...=+-|.-++|.+ |++|++|.-=..++|..+.++|+-+++-+ -|-.+|.||.
T Consensus 50 ~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~---g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~ 126 (649)
T KOG0496|consen 50 MWPDLIKKAKAGGLNVIQTYVFWNLHEPSP---GKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLR 126 (649)
T ss_pred hhHHHHHHHHhcCCceeeeeeecccccCCC---CcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhh
Confidence 477889999999999999999999999999 89999998777899999999998755533 3678899988
Q ss_pred HhhCCCC----CchhHHHHHHHHHHHHHHh-------CCccceEEeeccchh
Q 036046 193 EKYGGPL----NRSFVDDFKDYAEICFKSF-------GDRVKNWMTINEPLI 233 (538)
Q Consensus 193 ~~~ggw~----~~~~~~~f~~ya~~~~~~f-------gd~V~~W~t~NEp~~ 233 (538)
.. .|-. |+.+..++.+|.+.++... |.=|..-++=||-.-
T Consensus 127 ~~-pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG~ 177 (649)
T KOG0496|consen 127 NV-PGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYGN 177 (649)
T ss_pred hC-CceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhhH
Confidence 76 4532 6778888888888888833 334778888888763
No 39
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=95.08 E-value=0.16 Score=52.31 Aligned_cols=105 Identities=15% Similarity=0.238 Sum_probs=63.5
Q ss_pred hHHHHHHHHHhCCCEEEecc--ccccc-c----cCCCC---C------CCCChhHHHHHHHHHHHHHHcCCEEEEEecCC
Q 036046 122 YKEDMKAVKELGVDSYRFSI--SWTRI-L----PNGSL---S------GGVNQMGIDHYNSLIDELIKYGIKPFVTIFHF 185 (538)
Q Consensus 122 y~eDi~lm~~lG~~~~Rfsi--~Wsri-~----P~~~~---~------g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~ 185 (538)
.+.=++..|+-|+|.+|+.+ .|... . |.... + ..+|++=.++.+++|+.|.+.||+|.+.+.|
T Consensus 32 ~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w- 110 (289)
T PF13204_consen 32 WEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW- 110 (289)
T ss_dssp HHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--
T ss_pred HHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-
Confidence 34447888999999999999 55543 1 11100 0 1378888899999999999999999876655
Q ss_pred CCchHHHHhhCCCCC---chhHHHHHHHHHHHHHHhCCc-cceEEeeccc
Q 036046 186 DSPQGLQEKYGGPLN---RSFVDDFKDYAEICFKSFGDR-VKNWMTINEP 231 (538)
Q Consensus 186 ~~P~~l~~~~ggw~~---~~~~~~f~~ya~~~~~~fgd~-V~~W~t~NEp 231 (538)
+.|. .+ +.|-. .-..+.-.+|.+.|++||+.. =..|++-||-
T Consensus 111 g~~~---~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 111 GCPY---VP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp HHHH---H--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred CCcc---cc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 2221 11 44543 333677889999999999998 4789999995
No 40
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=94.63 E-value=0.27 Score=46.43 Aligned_cols=105 Identities=23% Similarity=0.398 Sum_probs=68.6
Q ss_pred hchHHHHHHHHHhCCCEEEecccccccc-----cCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHh
Q 036046 120 RRYKEDMKAVKELGVDSYRFSISWTRIL-----PNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEK 194 (538)
Q Consensus 120 ~~y~eDi~lm~~lG~~~~Rfsi~Wsri~-----P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~ 194 (538)
.+|+++++.|+++|++.+=+- |+... |.....+.+.....+....+++++-++||+++|+|+.. |.|..+.
T Consensus 20 ~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~--~~~w~~~ 95 (166)
T PF14488_consen 20 AQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD--PDYWDQG 95 (166)
T ss_pred HHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC--chhhhcc
Confidence 469999999999999987432 44332 22100012333455789999999999999999999753 3444321
Q ss_pred hCCCCCchhHHHHHHHHHHHHHHhCCc--cceEEeeccch
Q 036046 195 YGGPLNRSFVDDFKDYAEICFKSFGDR--VKNWMTINEPL 232 (538)
Q Consensus 195 ~ggw~~~~~~~~f~~ya~~~~~~fgd~--V~~W~t~NEp~ 232 (538)
-..| -++.=..-++.+.++||.+ +..|-.-.|+.
T Consensus 96 ~~~~----~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~ 131 (166)
T PF14488_consen 96 DLDW----EAERNKQVADELWQRYGHHPSFYGWYIPYEID 131 (166)
T ss_pred CHHH----HHHHHHHHHHHHHHHHcCCCCCceEEEecccC
Confidence 0112 2333345778888889874 77787777764
No 41
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=93.99 E-value=0.21 Score=59.92 Aligned_cols=91 Identities=14% Similarity=0.109 Sum_probs=64.1
Q ss_pred hhhchHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEec---CCCCchHHHHh
Q 036046 118 SYRRYKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIF---HFDSPQGLQEK 194 (538)
Q Consensus 118 ~Y~~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~---H~~~P~~l~~~ 194 (538)
....+++||++||++|+|++|+| ..|.. .++.+.|=+.||-++--.. |.-.|..
T Consensus 369 t~e~~~~di~lmK~~g~NaVR~s-----HyP~~--------------p~fydlcDe~GilV~dE~~~e~hg~~~~~---- 425 (1027)
T PRK09525 369 DEETMVQDILLMKQHNFNAVRCS-----HYPNH--------------PLWYELCDRYGLYVVDEANIETHGMVPMN---- 425 (1027)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCCC--------------HHHHHHHHHcCCEEEEecCccccCCcccc----
Confidence 45778999999999999999995 34433 2345677789997776542 2111110
Q ss_pred hCCCCCchhHHHHHHHHHHHHHHhCCc--cceEEeeccch
Q 036046 195 YGGPLNRSFVDDFKDYAEICFKSFGDR--VKNWMTINEPL 232 (538)
Q Consensus 195 ~ggw~~~~~~~~f~~ya~~~~~~fgd~--V~~W~t~NEp~ 232 (538)
....+++..+.+.+=++.+++|..++ |..|...||+.
T Consensus 426 -~~~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 426 -RLSDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred -CCCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 01124566777888889999999885 99999999974
No 42
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=93.65 E-value=0.2 Score=49.76 Aligned_cols=116 Identities=15% Similarity=0.109 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHcCCEEEEEecC--------------CCCchHHHHh----------------hCC----CCCch---hH
Q 036046 162 DHYNSLIDELIKYGIKPFVTIFH--------------FDSPQGLQEK----------------YGG----PLNRS---FV 204 (538)
Q Consensus 162 ~~y~~~i~~l~~~gI~p~vtL~H--------------~~~P~~l~~~----------------~gg----w~~~~---~~ 204 (538)
+.++.+|+.-+++|..+|+||.= ...|.|=..+ .+| ..+|+ -.
T Consensus 24 ~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~~ 103 (239)
T PF12891_consen 24 DVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDNP 103 (239)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSSE
T ss_pred HHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCccH
Confidence 77999999999999999999952 1122211000 001 11333 11
Q ss_pred HHHHHHHHHHHHHhCCc-----cceEEeeccchhhhhcccccCcCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 036046 205 DDFKDYAEICFKSFGDR-----VKNWMTINEPLIASKYGYESGTAAPGRCSDRNNCPAGNSSTEPYIASHNFLLAHAAAF 279 (538)
Q Consensus 205 ~~f~~ya~~~~~~fgd~-----V~~W~t~NEp~~~~~~gy~~G~~pPg~~~~~~~~~~g~~~~~~~~~~h~lllAHa~A~ 279 (538)
.+-.+++..+..+||.. |++|..-|||.+-. +.++-=+. ....+.-+.....+.|+|+
T Consensus 104 ~y~~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~------~TH~dVHP-----------~~~t~~El~~r~i~~Akai 166 (239)
T PF12891_consen 104 VYMDEWVNYLVNKYGNASTNGGVKYYSLDNEPDLWH------STHRDVHP-----------EPVTYDELRDRSIEYAKAI 166 (239)
T ss_dssp EEHHHHHHHHHHHH--TTSTTS--EEEESS-GGGHH------HHTTTT-------------S---HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccccCCCceEEEecCchHhhc------ccccccCC-----------CCCCHHHHHHHHHHHHHHH
Confidence 22334466777777764 99999999998642 12211000 0233455666677778776
Q ss_pred HHHHHHhccCCCCeE-EEeecC
Q 036046 280 RLYEQKFRAKQGGQI-GLSLVS 300 (538)
Q Consensus 280 ~~~r~~~~~~~~g~I-Gi~~~~ 300 (538)
+... ++++| |.+.-.
T Consensus 167 K~~D------P~a~v~GP~~wg 182 (239)
T PF12891_consen 167 KAAD------PDAKVFGPVEWG 182 (239)
T ss_dssp HHH-------TTSEEEEEEE-S
T ss_pred HhhC------CCCeEeechhhc
Confidence 6543 46654 776443
No 43
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=93.22 E-value=0.39 Score=55.98 Aligned_cols=90 Identities=18% Similarity=0.199 Sum_probs=67.8
Q ss_pred chhhhchHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhh
Q 036046 116 IDSYRRYKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKY 195 (538)
Q Consensus 116 ~d~Y~~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ 195 (538)
+-.+..+..|+++||++|+|++|.| ..|+. .++.+.|-+.||=++=-..+ +- +
T Consensus 317 ~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~--------------~~~ydLcDelGllV~~Ea~~-----~~---~ 369 (808)
T COG3250 317 VTDEDAMERDLKLMKEANMNSVRTS-----HYPNS--------------EEFYDLCDELGLLVIDEAMI-----ET---H 369 (808)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC--------------HHHHHHHHHhCcEEEEecch-----hh---c
Confidence 4456669999999999999999999 67765 34556677789976654332 11 2
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhCCc--cceEEeeccch
Q 036046 196 GGPLNRSFVDDFKDYAEICFKSFGDR--VKNWMTINEPL 232 (538)
Q Consensus 196 ggw~~~~~~~~f~~ya~~~~~~fgd~--V~~W~t~NEp~ 232 (538)
++..+++..+...+=++.+++|-.+. |..|..-||.+
T Consensus 370 ~~~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~ 408 (808)
T COG3250 370 GMPDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESG 408 (808)
T ss_pred CCCCCcchhHHHHHHHHHHHHhccCCCcEEEEecccccc
Confidence 44456677777888899999999874 99999999965
No 44
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=92.88 E-value=0.41 Score=57.57 Aligned_cols=90 Identities=16% Similarity=0.214 Sum_probs=63.5
Q ss_pred hhhchHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEe----cCCCCchHHHH
Q 036046 118 SYRRYKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTI----FHFDSPQGLQE 193 (538)
Q Consensus 118 ~Y~~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL----~H~~~P~~l~~ 193 (538)
....+++|+++||++|+|++|+| +.|.. ..+.+.|=+.||-++--. +.|.....
T Consensus 353 ~~e~~~~dl~lmK~~g~NavR~s-----HyP~~--------------~~fydlcDe~GllV~dE~~~e~~g~~~~~~--- 410 (1021)
T PRK10340 353 GMDRVEKDIQLMKQHNINSVRTA-----HYPND--------------PRFYELCDIYGLFVMAETDVESHGFANVGD--- 410 (1021)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCCC--------------HHHHHHHHHCCCEEEECCcccccCcccccc---
Confidence 35789999999999999999996 35554 245677888999866643 11211100
Q ss_pred hhCCC--CCchhHHHHHHHHHHHHHHhCCc--cceEEeeccc
Q 036046 194 KYGGP--LNRSFVDDFKDYAEICFKSFGDR--VKNWMTINEP 231 (538)
Q Consensus 194 ~~ggw--~~~~~~~~f~~ya~~~~~~fgd~--V~~W~t~NEp 231 (538)
+ .+ .++...+.|.+=++.+++|.+++ |..|..-||.
T Consensus 411 -~-~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~ 450 (1021)
T PRK10340 411 -I-SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNES 450 (1021)
T ss_pred -c-ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 0 01 23455677777789999999885 9999999997
No 45
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=86.82 E-value=0.36 Score=52.18 Aligned_cols=109 Identities=21% Similarity=0.242 Sum_probs=80.4
Q ss_pred chHHHHHHHHHhCCCEEEecccc-cccccCCCCCCCCChhH-HHHHHHHHHHHHHcCCEEEEEec----C-----CCCch
Q 036046 121 RYKEDMKAVKELGVDSYRFSISW-TRILPNGSLSGGVNQMG-IDHYNSLIDELIKYGIKPFVTIF----H-----FDSPQ 189 (538)
Q Consensus 121 ~y~eDi~lm~~lG~~~~Rfsi~W-sri~P~~~~~g~~n~~g-l~~y~~~i~~l~~~gI~p~vtL~----H-----~~~P~ 189 (538)
..+.|++.|+.+|++..|.+|-= .. .-+. .|..|.+. ..+.+.+++.+...+|+.++||. | |-+|.
T Consensus 27 ei~~dle~a~~vg~k~lR~fiLDgEd-c~d~--~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipw 103 (587)
T COG3934 27 EIKADLEPAGFVGVKDLRLFILDGED-CRDK--EGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPW 103 (587)
T ss_pred hhhcccccccCccceeEEEEEecCcc-hhhh--hceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeec
Confidence 45678999999999999999632 11 2222 26777766 88999999999999999999986 3 33342
Q ss_pred HHHHhh--CCCCCchhHHHHHHHHHHHHHHhCCc--cceEEeeccchh
Q 036046 190 GLQEKY--GGPLNRSFVDDFKDYAEICFKSFGDR--VKNWMTINEPLI 233 (538)
Q Consensus 190 ~l~~~~--ggw~~~~~~~~f~~ya~~~~~~fgd~--V~~W~t~NEp~~ 233 (538)
.-... .-...+.++.-|.+|++.+++.|+.. +-.|..-|||.+
T Consensus 104 -ag~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 104 -AGEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred -CCCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 20000 11345788889999999999988864 788999999766
No 46
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=81.29 E-value=1.9 Score=46.01 Aligned_cols=99 Identities=15% Similarity=0.190 Sum_probs=71.5
Q ss_pred HHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCCCC-c-hhHHH
Q 036046 129 VKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGPLN-R-SFVDD 206 (538)
Q Consensus 129 m~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw~~-~-~~~~~ 206 (538)
-+|+|++-.|+---|.=++... -+++ .++++++|.+.+.|+.=+.+-+||+.+.--...|.+=.. + ...+.
T Consensus 14 ~~Ei~v~yi~~~~v~h~~~q~~----~~~~---t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl 86 (428)
T COG3664 14 DDEIQVNYIRRHGVWHVNAQKL----FYPF---TYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDL 86 (428)
T ss_pred hhhhceeeehhcceeeeeeccc----cCCh---HHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHH
Confidence 4688999998888888333332 4777 899999999999994433445688877765553433222 2 47899
Q ss_pred HHHHHHHHHHHhCCc-c--ceEEeeccchhh
Q 036046 207 FKDYAEICFKSFGDR-V--KNWMTINEPLIA 234 (538)
Q Consensus 207 f~~ya~~~~~~fgd~-V--~~W~t~NEp~~~ 234 (538)
+.++++.|+.++|-+ | -....+||||..
T Consensus 87 ~~~fl~h~~~~vg~e~v~kw~f~~~~~pn~~ 117 (428)
T COG3664 87 IAAFLKHVIRRVGVEFVRKWPFYSPNEPNLL 117 (428)
T ss_pred HHHHHHHHHHHhChhheeecceeecCCCCcc
Confidence 999999999999964 3 344688999865
No 47
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=80.36 E-value=15 Score=37.90 Aligned_cols=88 Identities=26% Similarity=0.508 Sum_probs=61.0
Q ss_pred hhchHHHHHHHHHhCCCEEEecc--cccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhC
Q 036046 119 YRRYKEDMKAVKELGVDSYRFSI--SWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYG 196 (538)
Q Consensus 119 Y~~y~eDi~lm~~lG~~~~Rfsi--~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~g 196 (538)
..||++--+++++.|||+.-+.= .=++++ ..+-|+-+.++-+.++.+||++.+++ .|..|.-+ |
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~~~L---------t~~~l~~v~~lAdvfRpYGIkv~LSv-nFasP~~l----g 121 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANPKLL---------TPEYLDKVARLADVFRPYGIKVYLSV-NFASPIEL----G 121 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--CGGG---------STTTHHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----T
T ss_pred hhHHHHHHHHHhhcCCceEEecccccChhhc---------CHHHHHHHHHHHHHHhhcCCEEEEEe-eccCCccc----C
Confidence 45788889999999999986532 111222 22335668899999999999999998 45667653 5
Q ss_pred C-----CCCchhHHHHHHHHHHHHHHhCC
Q 036046 197 G-----PLNRSFVDDFKDYAEICFKSFGD 220 (538)
Q Consensus 197 g-----w~~~~~~~~f~~ya~~~~~~fgd 220 (538)
| -++++++.++.+=++.+.++..|
T Consensus 122 gL~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 122 GLPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp S-S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred CcCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 5 46789999999999999999866
No 48
>smart00642 Aamy Alpha-amylase domain.
Probab=78.90 E-value=5.5 Score=37.46 Aligned_cols=65 Identities=17% Similarity=0.274 Sum_probs=43.6
Q ss_pred hhhchHHHHHHHHHhCCCEEEeccccccccc--CC-CCC----CCCCh--hHHHHHHHHHHHHHHcCCEEEEEe
Q 036046 118 SYRRYKEDMKAVKELGVDSYRFSISWTRILP--NG-SLS----GGVNQ--MGIDHYNSLIDELIKYGIKPFVTI 182 (538)
Q Consensus 118 ~Y~~y~eDi~lm~~lG~~~~Rfsi~Wsri~P--~~-~~~----g~~n~--~gl~~y~~~i~~l~~~gI~p~vtL 182 (538)
.+....+-+.-+++||++++-++=-+..... .. ... -.+|+ -..+=++++|++|+++||++|+.+
T Consensus 17 ~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~ 90 (166)
T smart00642 17 DLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDV 90 (166)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3455677788999999999988775554431 10 000 01111 123558999999999999999987
No 49
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=78.56 E-value=22 Score=32.22 Aligned_cols=94 Identities=12% Similarity=0.072 Sum_probs=57.5
Q ss_pred HHHHHHHHhCCCEEEeccc--ccc-cccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecC-C------CCchHHHH
Q 036046 124 EDMKAVKELGVDSYRFSIS--WTR-ILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFH-F------DSPQGLQE 193 (538)
Q Consensus 124 eDi~lm~~lG~~~~Rfsi~--Wsr-i~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H-~------~~P~~l~~ 193 (538)
+=++.||++|+|+.-+... +-- -.|...-.-....+ -+...++|+.|+++||++++=+-. | ..|.|+..
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HPeW~~~ 82 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHPEWFVR 82 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCCceeeE
Confidence 4478999999999998332 110 12332100112233 378999999999999998885532 2 35777652
Q ss_pred hhC------------CCC----CchhHHHHHHHHHHHHHHh
Q 036046 194 KYG------------GPL----NRSFVDDFKDYAEICFKSF 218 (538)
Q Consensus 194 ~~g------------gw~----~~~~~~~f~~ya~~~~~~f 218 (538)
.-. ||. |..+++...+-.+.++++|
T Consensus 83 ~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 83 DADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred CCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 211 232 4456677777777777777
No 50
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=75.67 E-value=12 Score=38.98 Aligned_cols=97 Identities=20% Similarity=0.275 Sum_probs=65.4
Q ss_pred hhchHHHHHHHHHhCCCEEEecc-------------cccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEe---
Q 036046 119 YRRYKEDMKAVKELGVDSYRFSI-------------SWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTI--- 182 (538)
Q Consensus 119 Y~~y~eDi~lm~~lG~~~~Rfsi-------------~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL--- 182 (538)
-...++-++.|+++|+|++=+-+ .|++..+.. .| .+ .|.+....+|+++.++||++..-+
T Consensus 18 ~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~--~~-~~-pg~DpL~~~I~eaHkrGlevHAW~~~~ 93 (311)
T PF02638_consen 18 KEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGK--QG-KD-PGFDPLEFMIEEAHKRGLEVHAWFRVG 93 (311)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCC--CC-CC-CCccHHHHHHHHHHHcCCEEEEEEEee
Confidence 34578889999999999865544 344443322 01 12 144679999999999999987554
Q ss_pred -cC-------CCCchHHHHhhCC-------------CCC---chhHHHHHHHHHHHHHHhC
Q 036046 183 -FH-------FDSPQGLQEKYGG-------------PLN---RSFVDDFKDYAEICFKSFG 219 (538)
Q Consensus 183 -~H-------~~~P~~l~~~~gg-------------w~~---~~~~~~f~~ya~~~~~~fg 219 (538)
-. -..|.|+.....| |+| |++++...+-++.++++|.
T Consensus 94 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 94 FNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred cCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 11 1346665422111 454 6999999999999999995
No 51
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.79 E-value=9.5 Score=41.62 Aligned_cols=114 Identities=14% Similarity=0.255 Sum_probs=74.7
Q ss_pred hhhchHHHHHHHHHhCCCEEEec----ccccccccCC--------------------------CCCCCCChhH----HHH
Q 036046 118 SYRRYKEDMKAVKELGVDSYRFS----ISWTRILPNG--------------------------SLSGGVNQMG----IDH 163 (538)
Q Consensus 118 ~Y~~y~eDi~lm~~lG~~~~Rfs----i~Wsri~P~~--------------------------~~~g~~n~~g----l~~ 163 (538)
.|.+|+..|+-|+=+|+|..=.. +-|-+|+-.- .-.|...+.. +-.
T Consensus 76 ~w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~L 155 (666)
T KOG2233|consen 76 GWEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLL 155 (666)
T ss_pred chHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHH
Confidence 36789999999999999966433 2444444331 1113333211 222
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCCchHHHHhhC--------CCC---------------CchhHHHHHHHHHHHHHHhCC
Q 036046 164 YNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYG--------GPL---------------NRSFVDDFKDYAEICFKSFGD 220 (538)
Q Consensus 164 y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~g--------gw~---------------~~~~~~~f~~ya~~~~~~fgd 220 (538)
=+++|+.+++-||+|++-.+--..|..|..-+. -|. .|-+.+-=..|-+...++||.
T Consensus 156 qkrIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~ 235 (666)
T KOG2233|consen 156 QKRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGG 235 (666)
T ss_pred HHHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCC
Confidence 358999999999999999998889999986542 233 234555556677888899996
Q ss_pred c--cceEEeeccc
Q 036046 221 R--VKNWMTINEP 231 (538)
Q Consensus 221 ~--V~~W~t~NEp 231 (538)
- +-.==||||.
T Consensus 236 ~tniy~~DpFNE~ 248 (666)
T KOG2233|consen 236 VTNIYSADPFNEI 248 (666)
T ss_pred cccccccCccccc
Confidence 2 2222288884
No 52
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=69.47 E-value=24 Score=39.65 Aligned_cols=93 Identities=16% Similarity=0.272 Sum_probs=58.8
Q ss_pred hhhchHHHHHHHHHhCCCEEEeccc--------c-------cccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEe
Q 036046 118 SYRRYKEDMKAVKELGVDSYRFSIS--------W-------TRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTI 182 (538)
Q Consensus 118 ~Y~~y~eDi~lm~~lG~~~~Rfsi~--------W-------sri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 182 (538)
.|.-..+-+.-+|+||++++-+.=- | -.+.|.- |. .+=+++||++|.++||++|+.+
T Consensus 109 ~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~---G~-----~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 109 TFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAY---GG-----PDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccccc---CC-----HHHHHHHHHHHHHCCCEEEEEE
Confidence 4556677799999999999875431 2 1122221 33 3448999999999999999986
Q ss_pred c--CCC---------CchHHHHh-hCCC------CCc---hhHHHHHHHHHHHHHHhC
Q 036046 183 F--HFD---------SPQGLQEK-YGGP------LNR---SFVDDFKDYAEICFKSFG 219 (538)
Q Consensus 183 ~--H~~---------~P~~l~~~-~ggw------~~~---~~~~~f~~ya~~~~~~fg 219 (538)
. |.. -| |+... ..+| .++ ++++.+.+-++.-+++||
T Consensus 181 V~NH~~~~~~~~~~~~~-y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~ 237 (542)
T TIGR02402 181 VYNHFGPEGNYLPRYAP-YFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYH 237 (542)
T ss_pred ccCCCCCccccccccCc-cccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhC
Confidence 3 542 12 33211 1233 234 677777777777776665
No 53
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=67.94 E-value=8.1 Score=40.19 Aligned_cols=82 Identities=18% Similarity=0.347 Sum_probs=38.7
Q ss_pred HHHHHHHHHHH--cCCCeEEEeecCccccCCCCcCcCcccChhhhHHHHHHHHHHHHHHHHcCCCE-----EEEEeccCC
Q 036046 424 MQQVLEYVKNN--YQNPAIYITENGVTEQRNDNLTLDVALKDEHRVDFVLGHLYYLHEAIKNGVNV-----KGYFYWSAF 496 (538)
Q Consensus 424 L~~~L~~l~~~--Y~~pPI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hL~~~~kAi~dGv~v-----~GY~~WSl~ 496 (538)
+.+.+...-++ +++.||+|||.|++..++.. ..+ .. =+.+.+.+.+.+.+|.+. .-+++.+++
T Consensus 212 ~~da~~~a~~~~g~~~~~vvv~ETGWPs~G~~~----a~~--~n----A~~~~~nl~~~~~~gt~~~~~~~~~~y~F~~F 281 (310)
T PF00332_consen 212 MVDAVYAAMEKLGFPNVPVVVGETGWPSAGDPG----ATP--EN----AQAYNQNLIKHVLKGTPLRPGNGIDVYIFEAF 281 (310)
T ss_dssp HHHHHHHHHHTTT-TT--EEEEEE---SSSSTT----CSH--HH----HHHHHHHHHHHCCGBBSSSBSS---EEES-SB
T ss_pred HHHHHHHHHHHhCCCCceeEEeccccccCCCCC----CCc--ch----hHHHHHHHHHHHhCCCcccCCCCCeEEEEEEe
Confidence 44444445444 45678999999999876310 011 11 234445555555566554 346778888
Q ss_pred CcccccCC--CCCccceEEEeC
Q 036046 497 DDFEWGIG--YLPRFGLYFIDY 516 (538)
Q Consensus 497 Dn~EW~~G--y~~RfGL~~VD~ 516 (538)
|- .|-.| .++.|||++-|.
T Consensus 282 dE-~~K~~~~~E~~wGlf~~d~ 302 (310)
T PF00332_consen 282 DE-NWKPGPEVERHWGLFYPDG 302 (310)
T ss_dssp ---TTSSSSGGGGG--SB-TTS
T ss_pred cC-cCCCCCcccceeeeECCCC
Confidence 73 34444 577899998765
No 54
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=65.64 E-value=18 Score=37.93 Aligned_cols=111 Identities=18% Similarity=0.323 Sum_probs=58.4
Q ss_pred hhchHHHHHHHHHhCCCEEEecc------------------------------cccccccCCCCCCCCChh----HHHHH
Q 036046 119 YRRYKEDMKAVKELGVDSYRFSI------------------------------SWTRILPNGSLSGGVNQM----GIDHY 164 (538)
Q Consensus 119 Y~~y~eDi~lm~~lG~~~~Rfsi------------------------------~Wsri~P~~~~~g~~n~~----gl~~y 164 (538)
|.||++.|+-|+=-|||.-=--+ .|.|+---..-.|.+..+ -.+.=
T Consensus 18 W~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~Lq 97 (333)
T PF05089_consen 18 WERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAELQ 97 (333)
T ss_dssp HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHHHH
Confidence 67899999999999998643221 344432221111333321 23445
Q ss_pred HHHHHHHHHcCCEEEEEecCCCCchHHHHhhCC--------C--------CCchhHHHHHHHHHH----HHHHhCCccce
Q 036046 165 NSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGG--------P--------LNRSFVDDFKDYAEI----CFKSFGDRVKN 224 (538)
Q Consensus 165 ~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~gg--------w--------~~~~~~~~f~~ya~~----~~~~fgd~V~~ 224 (538)
+++++++++.||+|++--+---.|..|.++|.+ | ++| .-+.|.+.++. --+.|| .-.+
T Consensus 98 ~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P-~dplF~~i~~~F~~~q~~~yG-~~~~ 175 (333)
T PF05089_consen 98 KKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDP-TDPLFAEIAKLFYEEQIKLYG-TDHI 175 (333)
T ss_dssp HHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-S-S--HHHHHHHHHHHHHHHHH----SE
T ss_pred HHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCC-CCchHHHHHHHHHHHHHHhcC-CCce
Confidence 689999999999999999988899999988622 3 232 12455555544 455677 3344
Q ss_pred EE--eeccc
Q 036046 225 WM--TINEP 231 (538)
Q Consensus 225 W~--t~NEp 231 (538)
+. +|||-
T Consensus 176 Y~~D~FnE~ 184 (333)
T PF05089_consen 176 YAADPFNEG 184 (333)
T ss_dssp EE--TTTTS
T ss_pred eCCCccCCC
Confidence 43 77884
No 55
>PRK05402 glycogen branching enzyme; Provisional
Probab=65.45 E-value=37 Score=39.62 Aligned_cols=100 Identities=16% Similarity=0.187 Sum_probs=64.1
Q ss_pred hhchHHHH-HHHHHhCCCEEEeccc--------cc-------ccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEe
Q 036046 119 YRRYKEDM-KAVKELGVDSYRFSIS--------WT-------RILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTI 182 (538)
Q Consensus 119 Y~~y~eDi-~lm~~lG~~~~Rfsi~--------Ws-------ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 182 (538)
|.-..+.+ .-+|+||++++-+.=- |. .|.|.- |. .+=.++||++|.++||++|+.+
T Consensus 264 ~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~---Gt-----~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 264 YRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRF---GT-----PDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCccc---CC-----HHHHHHHHHHHHHCCCEEEEEE
Confidence 44445553 7789999999876542 21 122222 33 3448999999999999999986
Q ss_pred c--CCCC-----------chHHHH-----hhCC-------CCCchhHHHHHHHHHHHHHHhCCccceEEee
Q 036046 183 F--HFDS-----------PQGLQE-----KYGG-------PLNRSFVDDFKDYAEICFKSFGDRVKNWMTI 228 (538)
Q Consensus 183 ~--H~~~-----------P~~l~~-----~~gg-------w~~~~~~~~f~~ya~~~~~~fgd~V~~W~t~ 228 (538)
- |... |.+... .+.. +.++++++.+.+-++.-+++|| |+.|-..
T Consensus 336 V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~--iDG~R~D 404 (726)
T PRK05402 336 VPAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH--IDGLRVD 404 (726)
T ss_pred CCCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC--CcEEEEC
Confidence 3 5422 111110 0112 3468889999999999998886 6666544
No 56
>PRK12313 glycogen branching enzyme; Provisional
Probab=65.21 E-value=30 Score=39.59 Aligned_cols=101 Identities=18% Similarity=0.241 Sum_probs=65.2
Q ss_pred hhhchHHH-HHHHHHhCCCEEEeccc--------c-------cccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEE
Q 036046 118 SYRRYKED-MKAVKELGVDSYRFSIS--------W-------TRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVT 181 (538)
Q Consensus 118 ~Y~~y~eD-i~lm~~lG~~~~Rfsi~--------W-------sri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vt 181 (538)
.|.-..+. +.-+|+||++++=+.=- | -.|.|.- |. .+=+++||++|.++||++|+.
T Consensus 168 ~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~---Gt-----~~d~k~lv~~~H~~Gi~VilD 239 (633)
T PRK12313 168 SYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRY---GT-----PEDFMYLVDALHQNGIGVILD 239 (633)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCC---CC-----HHHHHHHHHHHHHCCCEEEEE
Confidence 35556667 49999999999875432 2 1222222 33 244899999999999999998
Q ss_pred ec--CCCCch----HHH--------H---h-hCC-------CCCchhHHHHHHHHHHHHHHhCCccceEEee
Q 036046 182 IF--HFDSPQ----GLQ--------E---K-YGG-------PLNRSFVDDFKDYAEICFKSFGDRVKNWMTI 228 (538)
Q Consensus 182 L~--H~~~P~----~l~--------~---~-~gg-------w~~~~~~~~f~~ya~~~~~~fgd~V~~W~t~ 228 (538)
+- |..... ++. + . +.+ +.++++++.+.+-++.-+++|| |+.|-..
T Consensus 240 ~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~--iDG~R~D 309 (633)
T PRK12313 240 WVPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH--LDGLRVD 309 (633)
T ss_pred ECCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC--CcEEEEc
Confidence 53 543110 110 0 0 112 3468889999999999999886 5555543
No 57
>PLN02361 alpha-amylase
Probab=62.72 E-value=16 Score=39.50 Aligned_cols=66 Identities=18% Similarity=0.325 Sum_probs=46.0
Q ss_pred hhhhchHHHHHHHHHhCCCEEEecccccccccCCCC-C--CCCChh--HHHHHHHHHHHHHHcCCEEEEEe
Q 036046 117 DSYRRYKEDMKAVKELGVDSYRFSISWTRILPNGSL-S--GGVNQM--GIDHYNSLIDELIKYGIKPFVTI 182 (538)
Q Consensus 117 d~Y~~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~-~--g~~n~~--gl~~y~~~i~~l~~~gI~p~vtL 182 (538)
.+|....+-+.-+++||++++=++=.....-+.|=. . -.+|.. ..+=++++|++|.++||++|+.+
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 488999999999999999999877654433332200 0 011110 12448999999999999999975
No 58
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=61.73 E-value=16 Score=38.69 Aligned_cols=94 Identities=18% Similarity=0.293 Sum_probs=56.5
Q ss_pred HHHHHHHHHhCCCEEEecc-ccc-ccccCCCCCCC-CChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCCC
Q 036046 123 KEDMKAVKELGVDSYRFSI-SWT-RILPNGSLSGG-VNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGPL 199 (538)
Q Consensus 123 ~eDi~lm~~lG~~~~Rfsi-~Ws-ri~P~~~~~g~-~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw~ 199 (538)
++.++.|+++|++.+-+++ +-+ ++...- |. .+. +-+.+.|+.+++.|+..+-.-.=+++|.
T Consensus 99 ~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l---~R~~~~---~~~~~ai~~l~~~g~~~v~~dli~GlPg---------- 162 (374)
T PRK05799 99 EEKLKILKSMGVNRLSIGLQAWQNSLLKYL---GRIHTF---EEFLENYKLARKLGFNNINVDLMFGLPN---------- 162 (374)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHc---CCCCCH---HHHHHHHHHHHHcCCCcEEEEeecCCCC----------
Confidence 6789999999999555555 222 222211 21 222 4577889999999997443223456664
Q ss_pred CchhHHHHHHHHHHHHHHhCCccceEEeeccchhh
Q 036046 200 NRSFVDDFKDYAEICFKSFGDRVKNWMTINEPLIA 234 (538)
Q Consensus 200 ~~~~~~~f~~ya~~~~~~fgd~V~~W~t~NEp~~~ 234 (538)
++.+.|.+-.+.+.+.=-+.|..+...-+|++.
T Consensus 163 --qt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~ 195 (374)
T PRK05799 163 --QTLEDWKETLEKVVELNPEHISCYSLIIEEGTP 195 (374)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEEeccEecCCCH
Confidence 345566666666654323556555555577754
No 59
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=61.54 E-value=47 Score=33.96 Aligned_cols=100 Identities=14% Similarity=0.173 Sum_probs=65.5
Q ss_pred cchhhhchHHHHHHHHHhCCCEEEecccccccccCCC--CCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCC------
Q 036046 115 AIDSYRRYKEDMKAVKELGVDSYRFSISWTRILPNGS--LSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFD------ 186 (538)
Q Consensus 115 a~d~Y~~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~--~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~------ 186 (538)
+.-.+..+++=|+..+++|+..+=+..-|+.-..... .+..... ....++++..+++|+.+++-.+|-+
T Consensus 27 ~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~---~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~ 103 (273)
T PF10566_consen 27 HGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPD---FDLPELVDYAKEKGVGIWLWYHSETGGNVAN 103 (273)
T ss_dssp BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT-----HHHHHHHHHHTT-EEEEEEECCHTTBHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCc---cCHHHHHHHHHHcCCCEEEEEeCCcchhhHh
Confidence 4456788999999999999999999999997332221 0111122 4568999999999999999998866
Q ss_pred CchHHHHh---h---C---------CCCCchhHHHHHHHHHHHHHH
Q 036046 187 SPQGLQEK---Y---G---------GPLNRSFVDDFKDYAEICFKS 217 (538)
Q Consensus 187 ~P~~l~~~---~---g---------gw~~~~~~~~f~~ya~~~~~~ 217 (538)
+=.-+++. | | +-.+.+.++.+.+.++.++++
T Consensus 104 ~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 104 LEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp HHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 31112221 1 1 234567788888888888764
No 60
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=58.98 E-value=11 Score=37.63 Aligned_cols=59 Identities=27% Similarity=0.499 Sum_probs=40.2
Q ss_pred hHHHHHHHHHhCCCEEEecccccccccCCCCCC-------CCC--hhHHHHHHHHHHHHHHcCCEEEEEec
Q 036046 122 YKEDMKAVKELGVDSYRFSISWTRILPNGSLSG-------GVN--QMGIDHYNSLIDELIKYGIKPFVTIF 183 (538)
Q Consensus 122 y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g-------~~n--~~gl~~y~~~i~~l~~~gI~p~vtL~ 183 (538)
..+-++-+|+||++++-++=-+.. |.+. .| .+| .-..+=+++||++|.++||++|+.+.
T Consensus 6 i~~kLdyl~~lGv~~I~l~Pi~~~--~~~~-~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 6 IIDKLDYLKDLGVNAIWLSPIFES--PNGY-HGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHHTHHHHHHHTESEEEESS-EES--SSST-TTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHhhHHHHHcCCCceeccccccc--cccc-ccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 456688999999999998765541 1110 01 111 11345689999999999999999873
No 61
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=55.93 E-value=58 Score=33.63 Aligned_cols=74 Identities=18% Similarity=0.196 Sum_probs=51.6
Q ss_pred HHHHHhCCCEEEecccccccccCCCCCCCCChhH------HHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCCCC
Q 036046 127 KAVKELGVDSYRFSISWTRILPNGSLSGGVNQMG------IDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGPLN 200 (538)
Q Consensus 127 ~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~g------l~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw~~ 200 (538)
+.+++.|++++-++..= . .+ +|.+.+.+ .......|..|+++|++++|.+ |||..
T Consensus 19 ~~~~~~g~~~v~lAFi~--~--~~--~~~~~w~g~~~~~~~~~~~~~i~~lk~~G~kViiS~-------------GG~~g 79 (294)
T cd06543 19 TYAAATGVKAFTLAFIV--A--SG--GCKPAWGGSYPLDQGGWIKSDIAALRAAGGDVIVSF-------------GGASG 79 (294)
T ss_pred HHHHHcCCCEEEEEEEE--c--CC--CCcccCCCCCCcccchhHHHHHHHHHHcCCeEEEEe-------------cCCCC
Confidence 56778899988876531 1 11 12332222 2456778999999999999998 66654
Q ss_pred ------chhHHHHHHHHHHHHHHhC
Q 036046 201 ------RSFVDDFKDYAEICFKSFG 219 (538)
Q Consensus 201 ------~~~~~~f~~ya~~~~~~fg 219 (538)
+..++.|++....+.++||
T Consensus 80 ~~~~~~~~~~~~~~~a~~~~i~~y~ 104 (294)
T cd06543 80 TPLATSCTSADQLAAAYQKVIDAYG 104 (294)
T ss_pred CccccCcccHHHHHHHHHHHHHHhC
Confidence 3577888888888888887
No 62
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=53.57 E-value=83 Score=32.36 Aligned_cols=106 Identities=16% Similarity=0.128 Sum_probs=65.5
Q ss_pred chHHHHHHHHHhC--CCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCC---CCchHHHH--
Q 036046 121 RYKEDMKAVKELG--VDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHF---DSPQGLQE-- 193 (538)
Q Consensus 121 ~y~eDi~lm~~lG--~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~---~~P~~l~~-- 193 (538)
..++-++.+++.| ++++=+.+.|.+-.-.+ +=.+|.+-.---+.+|++|+++|+++++.+.-+ +.|..-+-
T Consensus 25 ~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~--~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~ 102 (308)
T cd06593 25 EVNEFADGMRERNLPCDVIHLDCFWMKEFQWC--DFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAE 102 (308)
T ss_pred HHHHHHHHHHHcCCCeeEEEEecccccCCcce--eeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHH
Confidence 3578889999999 45566777787432211 013343333335799999999999988766522 22321110
Q ss_pred h----------------------hCCCCCchhHHHHHHHHHHHHHHhCCccce-EEeeccc
Q 036046 194 K----------------------YGGPLNRSFVDDFKDYAEICFKSFGDRVKN-WMTINEP 231 (538)
Q Consensus 194 ~----------------------~ggw~~~~~~~~f~~ya~~~~~~fgd~V~~-W~t~NEp 231 (538)
+ +-.+.||+.++.|.+..+.+.+ .| |++ |+=+||+
T Consensus 103 ~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~G--id~~~~D~~e~ 160 (308)
T cd06593 103 KGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MG--VDCFKTDFGER 160 (308)
T ss_pred CCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hC--CcEEecCCCCC
Confidence 0 0126789999999887776554 44 554 4457886
No 63
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=51.66 E-value=49 Score=34.75 Aligned_cols=68 Identities=16% Similarity=0.182 Sum_probs=44.7
Q ss_pred HHHHHHHHHcCCEEEEEecC-C----CCchHHHHhhCCCCCchhHHHHHHHHHHHHHHhCCccceEEeeccchhhhh
Q 036046 165 NSLIDELIKYGIKPFVTIFH-F----DSPQGLQEKYGGPLNRSFVDDFKDYAEICFKSFGDRVKNWMTINEPLIASK 236 (538)
Q Consensus 165 ~~~i~~l~~~gI~p~vtL~H-~----~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fgd~V~~W~t~NEp~~~~~ 236 (538)
++|+++|++.|++.++.+.- . ..|.. ..+..|.||+.++++.+..+.+.+ .|- .-+|+=+|||.+++.
T Consensus 67 ~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~--~~~pDftnp~ar~wW~~~~~~l~~-~Gv-~~~W~DmnEp~~~~~ 139 (332)
T cd06601 67 KEMFDNLHNKGLKCSTNITPVISYGGGLGSP--GLYPDLGRPDVREWWGNQYKYLFD-IGL-EFVWQDMTTPAIMPS 139 (332)
T ss_pred HHHHHHHHHCCCeEEEEecCceecCccCCCC--ceeeCCCCHHHHHHHHHHHHHHHh-CCC-ceeecCCCCcccccC
Confidence 68999999999997765531 1 11110 012358889999988776655433 342 348889999998754
No 64
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=51.62 E-value=84 Score=35.89 Aligned_cols=100 Identities=16% Similarity=0.147 Sum_probs=64.6
Q ss_pred hhchHHHH-HHHHHhCCCEEEe-cccccc--------------cccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEe
Q 036046 119 YRRYKEDM-KAVKELGVDSYRF-SISWTR--------------ILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTI 182 (538)
Q Consensus 119 Y~~y~eDi-~lm~~lG~~~~Rf-si~Wsr--------------i~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 182 (538)
|.-..+.+ .-+|+||++++-+ .|..+. +.|.- |. .+=+++||++|.++||++|+.+
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~---Gt-----~~dlk~lV~~~H~~Gi~VilD~ 226 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRF---GT-----PDDFMYFVDACHQAGIGVILDW 226 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCccccccc---CC-----HHHHHHHHHHHHHCCCEEEEEe
Confidence 44455664 8899999999987 333221 11111 22 2348999999999999999986
Q ss_pred c--CCCC-----------chHHHH-----hhCC-------CCCchhHHHHHHHHHHHHHHhCCccceEEee
Q 036046 183 F--HFDS-----------PQGLQE-----KYGG-------PLNRSFVDDFKDYAEICFKSFGDRVKNWMTI 228 (538)
Q Consensus 183 ~--H~~~-----------P~~l~~-----~~gg-------w~~~~~~~~f~~ya~~~~~~fgd~V~~W~t~ 228 (538)
- |... |.+... .+.. +.++++++.+.+-++..+++|+ |+.|-..
T Consensus 227 V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~--iDG~R~D 295 (613)
T TIGR01515 227 VPGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH--IDGLRVD 295 (613)
T ss_pred cccCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC--CcEEEEc
Confidence 4 5421 112110 0011 2468999999999999999996 5555544
No 65
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=51.61 E-value=40 Score=34.26 Aligned_cols=54 Identities=20% Similarity=0.257 Sum_probs=39.5
Q ss_pred HHHHHHHHHhCCCEEEeccccc-ccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEE
Q 036046 123 KEDMKAVKELGVDSYRFSISWT-RILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVT 181 (538)
Q Consensus 123 ~eDi~lm~~lG~~~~Rfsi~Ws-ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vt 181 (538)
+|.+++|+++|++.+-++++-+ .+.+.- .+.-+. +.+.+.++.++++||.+.++
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i--~~~~s~---~~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNI--ISTHTY---DDRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhc--cCCCCH---HHHHHHHHHHHHcCCEEEEe
Confidence 8999999999999999999821 133332 122344 66789999999999986544
No 66
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=51.40 E-value=48 Score=33.77 Aligned_cols=53 Identities=17% Similarity=0.217 Sum_probs=40.1
Q ss_pred cccchhhhchHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEec
Q 036046 113 ITAIDSYRRYKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIF 183 (538)
Q Consensus 113 ~~a~d~Y~~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~ 183 (538)
|-+|..=..|..|+++++.-+. ..|.= | -|. .-..++...+.+.|++.+++++
T Consensus 56 dGtCKSa~~~~sDLe~l~~~t~-~IR~Y-------------~-sDC---n~le~v~pAa~~~g~kv~lGiw 108 (305)
T COG5309 56 DGTCKSADQVASDLELLASYTH-SIRTY-------------G-SDC---NTLENVLPAAEASGFKVFLGIW 108 (305)
T ss_pred CCCCcCHHHHHhHHHHhccCCc-eEEEe-------------e-ccc---hhhhhhHHHHHhcCceEEEEEe
Confidence 4478888889999999999886 44421 2 344 3367889999999999999884
No 67
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=50.90 E-value=31 Score=37.98 Aligned_cols=67 Identities=18% Similarity=0.261 Sum_probs=44.3
Q ss_pred hhhhchHHHHHHHHHhCCCEEEeccccccc--------ccCCCC-------CCCCChh--HHHHHHHHHHHHHHcCCEEE
Q 036046 117 DSYRRYKEDMKAVKELGVDSYRFSISWTRI--------LPNGSL-------SGGVNQM--GIDHYNSLIDELIKYGIKPF 179 (538)
Q Consensus 117 d~Y~~y~eDi~lm~~lG~~~~Rfsi~Wsri--------~P~~~~-------~g~~n~~--gl~~y~~~i~~l~~~gI~p~ 179 (538)
|.|....+-++-+++||+++.=++=...-. -|..-. .|.+|.. ..+=+++||++|.++||++|
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 456667788999999999999877644322 111100 0122211 23448999999999999999
Q ss_pred EEec
Q 036046 180 VTIF 183 (538)
Q Consensus 180 vtL~ 183 (538)
+.+-
T Consensus 99 ~D~V 102 (479)
T PRK09441 99 ADVV 102 (479)
T ss_pred EEEC
Confidence 9863
No 68
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=50.41 E-value=49 Score=32.79 Aligned_cols=83 Identities=13% Similarity=0.078 Sum_probs=55.5
Q ss_pred HHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCCCCch
Q 036046 123 KEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGPLNRS 202 (538)
Q Consensus 123 ~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw~~~~ 202 (538)
+++++++++.|++.+|++++-+-..-.... +.=....++-..+.++.+++.|+++.+.+....-| ..
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~-~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~------------~~ 143 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNL-NKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC------------KT 143 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC------------CC
Confidence 899999999999999999976632111100 11122345668899999999999999999654444 13
Q ss_pred hHHHHHHHHHHHHHHhC
Q 036046 203 FVDDFKDYAEICFKSFG 219 (538)
Q Consensus 203 ~~~~f~~ya~~~~~~fg 219 (538)
..+.+.++++.+. .+|
T Consensus 144 ~~~~l~~~~~~~~-~~g 159 (265)
T cd03174 144 DPEYVLEVAKALE-EAG 159 (265)
T ss_pred CHHHHHHHHHHHH-HcC
Confidence 3455666666655 344
No 69
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=49.43 E-value=93 Score=32.77 Aligned_cols=88 Identities=18% Similarity=0.204 Sum_probs=65.2
Q ss_pred CcccchhhhchHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHH
Q 036046 112 LITAIDSYRRYKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGL 191 (538)
Q Consensus 112 ~~~a~d~Y~~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l 191 (538)
+-+|.=||+ |+.-+. ..+.|++.+|+. + |++-. -+..+.+++.++++|+-.=+...|-.++.-+
T Consensus 74 PlVADIHFd-~~lAl~-a~~~g~dkiRIN---------P---GNig~--~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~ 137 (346)
T TIGR00612 74 PLVADIHFD-YRLAAL-AMAKGVAKVRIN---------P---GNIGF--RERVRDVVEKARDHGKAMRIGVNHGSLERRL 137 (346)
T ss_pred CEEEeeCCC-cHHHHH-HHHhccCeEEEC---------C---CCCCC--HHHHHHHHHHHHHCCCCEEEecCCCCCcHHH
Confidence 445666776 455443 346699999873 3 44432 3678999999999999999999999999999
Q ss_pred HHhhCCCCCchhHHHHHHHHHHHH
Q 036046 192 QEKYGGPLNRSFVDDFKDYAEICF 215 (538)
Q Consensus 192 ~~~~ggw~~~~~~~~f~~ya~~~~ 215 (538)
.++||+-..+.+++--.++++.|-
T Consensus 138 ~~kyg~~t~eamveSAl~~v~~le 161 (346)
T TIGR00612 138 LEKYGDATAEAMVQSALEEAAILE 161 (346)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHH
Confidence 999877566666776666666553
No 70
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=48.88 E-value=48 Score=33.90 Aligned_cols=82 Identities=12% Similarity=0.086 Sum_probs=59.8
Q ss_pred HHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCCCCch
Q 036046 123 KEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGPLNRS 202 (538)
Q Consensus 123 ~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw~~~~ 202 (538)
+.|++++++.|++..++.++=|...-.... +.--.+.++-..++++.+++.|+++.+++-+|.-|. +.
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~-~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~-----------r~ 144 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGSLKHCTEQL-RKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM-----------RD 144 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC-----------cC
Confidence 568999999999999999955544433211 233466788899999999999999999998876663 11
Q ss_pred hHHHHHHHHHHHHH
Q 036046 203 FVDDFKDYAEICFK 216 (538)
Q Consensus 203 ~~~~f~~ya~~~~~ 216 (538)
..+.+.++++.+.+
T Consensus 145 ~~~~~~~~~~~~~~ 158 (280)
T cd07945 145 SPDYVFQLVDFLSD 158 (280)
T ss_pred CHHHHHHHHHHHHH
Confidence 24566677776654
No 71
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=48.79 E-value=36 Score=33.54 Aligned_cols=51 Identities=18% Similarity=0.548 Sum_probs=40.0
Q ss_pred hchHHHHHHHHHhCCCEEEe----------------------cccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCE
Q 036046 120 RRYKEDMKAVKELGVDSYRF----------------------SISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIK 177 (538)
Q Consensus 120 ~~y~eDi~lm~~lG~~~~Rf----------------------si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~ 177 (538)
-.-+.=|+||++||.++..| ++ | +||.| | +|. +.+.+++..+++.|++
T Consensus 135 V~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPTG---G-Idl---~Nf~~I~~i~ldaGv~ 204 (236)
T TIGR03581 135 VPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPTG---G-IDL---DNFEEIVQIALDAGVE 204 (236)
T ss_pred eeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCCC---C-ccH---HhHHHHHHHHHHcCCC
Confidence 34577799999999999885 23 3 57776 4 777 7789999999999998
Q ss_pred EEE
Q 036046 178 PFV 180 (538)
Q Consensus 178 p~v 180 (538)
-++
T Consensus 205 kvi 207 (236)
T TIGR03581 205 KVI 207 (236)
T ss_pred eec
Confidence 543
No 72
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=47.83 E-value=1.1e+02 Score=34.16 Aligned_cols=98 Identities=17% Similarity=0.207 Sum_probs=53.6
Q ss_pred HHHHHHHHcCCCeEEEeecCccccCCCCcCcCcccChhhhHHHHHHHHHHHHHHHHcCCCEEEEEeccC-CCc---cccc
Q 036046 427 VLEYVKNNYQNPAIYITENGVTEQRNDNLTLDVALKDEHRVDFVLGHLYYLHEAIKNGVNVKGYFYWSA-FDD---FEWG 502 (538)
Q Consensus 427 ~L~~l~~~Y~~pPI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hL~~~~kAi~dGv~v~GY~~WSl-~Dn---~EW~ 502 (538)
.|..++++|++..|+-||.-.+..... ....+-.-.|. ..+...+...+..| +.||+.|.| +|. .-|.
T Consensus 319 ~l~~~h~~~P~k~l~~TE~~~g~~~~~---~~~~~g~w~~~---~~y~~~ii~~lnn~--~~gw~~WNl~LD~~GGP~~~ 390 (496)
T PF02055_consen 319 ALDQVHNKFPDKFLLFTEACCGSWNWD---TSVDLGSWDRA---ERYAHDIIGDLNNW--VSGWIDWNLALDENGGPNWV 390 (496)
T ss_dssp HHHHHHHHSTTSEEEEEEEESS-STTS----SS-TTHHHHH---HHHHHHHHHHHHTT--EEEEEEEESEBETTS---TT
T ss_pred HHHHHHHHCCCcEEEeeccccCCCCcc---cccccccHHHH---HHHHHHHHHHHHhh--ceeeeeeeeecCCCCCCccc
Confidence 466789999988899999866553210 00011122333 33445556666777 579999998 442 2243
Q ss_pred CCCCCccceEEEeCCCCCccccChhHHHHHHHH
Q 036046 503 IGYLPRFGLYFIDYNNNLTRIPKESAKWVRDFL 535 (538)
Q Consensus 503 ~Gy~~RfGL~~VD~~~~~~R~pK~S~~~y~~ii 535 (538)
.++.. ..+-||.++ .+-+..+.++.++++-
T Consensus 391 ~n~~d--~~iivd~~~-~~~~~~p~yY~~gHfS 420 (496)
T PF02055_consen 391 GNFCD--APIIVDSDT-GEFYKQPEYYAMGHFS 420 (496)
T ss_dssp ---B----SEEEEGGG-TEEEE-HHHHHHHHHH
T ss_pred CCCCC--ceeEEEcCC-CeEEEcHHHHHHHHHh
Confidence 33332 334577763 5556667777666553
No 73
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=47.49 E-value=88 Score=32.80 Aligned_cols=91 Identities=18% Similarity=0.260 Sum_probs=65.2
Q ss_pred HHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCCCCchhH
Q 036046 125 DMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGPLNRSFV 204 (538)
Q Consensus 125 Di~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw~~~~~~ 204 (538)
..+.+|++|.++..|=+=|. |++ +-.+|..-.++.+++.++|.+.+|-=++=+..+|.+.- +. .++++.
T Consensus 112 s~~rike~GadavK~Llyy~---pD~--~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~~~--d~----~~~eya 180 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYD---VDG--DEEINDQKQAYIERIGSECTAEDIPFFLELLTYDERIS--DN----NSAAYA 180 (329)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCC--CHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCccc--cc----ccHHHH
Confidence 46889999999999999886 665 25688888999999999999999998888888765531 11 223333
Q ss_pred HHHHHHHHHHHHHhCC---ccceEE
Q 036046 205 DDFKDYAEICFKSFGD---RVKNWM 226 (538)
Q Consensus 205 ~~f~~ya~~~~~~fgd---~V~~W~ 226 (538)
+..-+.+-..++.|++ .|+.|=
T Consensus 181 k~kP~~V~~amkefs~~~~gvDVlK 205 (329)
T PRK04161 181 KLKPHKVNGAMKVFSDKRFGVDVLK 205 (329)
T ss_pred hhChHHHHHHHHHhccCCCCCcEEE
Confidence 3333345556677775 366554
No 74
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=47.49 E-value=69 Score=33.99 Aligned_cols=94 Identities=18% Similarity=0.312 Sum_probs=57.2
Q ss_pred HHHHHHHHHhCCCEEEecc-cc-cccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCCCC
Q 036046 123 KEDMKAVKELGVDSYRFSI-SW-TRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGPLN 200 (538)
Q Consensus 123 ~eDi~lm~~lG~~~~Rfsi-~W-sri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw~~ 200 (538)
++.+++|+++|++.+-+++ += .++...-. ...+. +-..+.|+.+++.|+..+-.-.=+++|.
T Consensus 100 ~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~--r~~~~---~~~~~~i~~l~~~g~~~v~~dli~GlPg----------- 163 (377)
T PRK08599 100 KEKLQVLKDSGVNRISLGVQTFNDELLKKIG--RTHNE---EDVYEAIANAKKAGFDNISIDLIYALPG----------- 163 (377)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcC--CCCCH---HHHHHHHHHHHHcCCCcEEEeeecCCCC-----------
Confidence 6889999999999887777 32 33443321 22333 5577899999999997443323456664
Q ss_pred chhHHHHHHHHHHHHHHhC-CccceEEeeccchhh
Q 036046 201 RSFVDDFKDYAEICFKSFG-DRVKNWMTINEPLIA 234 (538)
Q Consensus 201 ~~~~~~f~~ya~~~~~~fg-d~V~~W~t~NEp~~~ 234 (538)
++.+.+.+=.+.+.+ ++ +.|......-+|.+.
T Consensus 164 -qt~~~~~~~l~~~~~-l~~~~i~~y~l~~~pgT~ 196 (377)
T PRK08599 164 -QTIEDFKESLAKALA-LDIPHYSAYSLILEPKTV 196 (377)
T ss_pred -CCHHHHHHHHHHHHc-cCCCEEeeeceeecCCCh
Confidence 234455555555543 43 345444444577654
No 75
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=47.10 E-value=54 Score=34.81 Aligned_cols=61 Identities=16% Similarity=0.091 Sum_probs=46.9
Q ss_pred hHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEec
Q 036046 122 YKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIF 183 (538)
Q Consensus 122 y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~ 183 (538)
.++|++.+.+.|++.+|+.++-|.+.-.... +.=-.+.++-..+.++.+++.|+++.+++-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~-~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKL-KKSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 4899999999999999998877665433211 222345678889999999999999888874
No 76
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=47.07 E-value=89 Score=32.70 Aligned_cols=90 Identities=17% Similarity=0.230 Sum_probs=63.7
Q ss_pred HHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCCCCchhHH
Q 036046 126 MKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGPLNRSFVD 205 (538)
Q Consensus 126 i~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw~~~~~~~ 205 (538)
.+.+|++|.++..|=+=|. |++ +..+|..-.++.+++.++|.+.+|-=++=+..++.+.- +. .+.++.+
T Consensus 111 ~~rike~GadavK~Llyy~---pD~--~~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~~~--d~----~~~~yak 179 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD---VDE--PDEINEQKKAYIERIGSECVAEDIPFFLEILTYDEKIA--DN----GSVEYAK 179 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC---CCC--CHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCccc--cc----ccHHHHh
Confidence 5889999999999999886 665 25589888999999999999999988887777765532 11 1223333
Q ss_pred HHHHHHHHHHHHhCC---ccceEE
Q 036046 206 DFKDYAEICFKSFGD---RVKNWM 226 (538)
Q Consensus 206 ~f~~ya~~~~~~fgd---~V~~W~ 226 (538)
..-+.+-..++.|++ .|+.|=
T Consensus 180 ~kP~~V~~a~kefs~~~~gvDVlK 203 (324)
T PRK12399 180 VKPHKVNEAMKVFSKPRFGVDVLK 203 (324)
T ss_pred hChHHHHHHHHHhccCCCCCcEEE
Confidence 333344456677765 355554
No 77
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=47.05 E-value=84 Score=32.39 Aligned_cols=107 Identities=16% Similarity=0.140 Sum_probs=70.2
Q ss_pred chHHHHHHHHHhCC--CEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCC---CchHHH---
Q 036046 121 RYKEDMKAVKELGV--DSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFD---SPQGLQ--- 192 (538)
Q Consensus 121 ~y~eDi~lm~~lG~--~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~---~P~~l~--- 192 (538)
...+-++.+++.|+ +++-+.+.|..-. + +=.+|.+-..--.+++++|++.|+++++.+.=+- .+..-+
T Consensus 31 ~v~~~~~~~~~~~iP~d~i~iD~~w~~~~--g--~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~ 106 (303)
T cd06592 31 TVLNYAQEIIDNGFPNGQIEIDDNWETCY--G--DFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVE 106 (303)
T ss_pred HHHHHHHHHHHcCCCCCeEEeCCCccccC--C--ccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhh
Confidence 35777888999995 4777777785321 1 1134433333357999999999999888765321 121111
Q ss_pred ------HhhC----------------CCCCchhHHHHHHHHHHHHHHhCCccceEEeeccch
Q 036046 193 ------EKYG----------------GPLNRSFVDDFKDYAEICFKSFGDRVKNWMTINEPL 232 (538)
Q Consensus 193 ------~~~g----------------gw~~~~~~~~f~~ya~~~~~~fgd~V~~W~t~NEp~ 232 (538)
++-| .+.||+.++.+.+..+.+....|= --+|+=+|||.
T Consensus 107 ~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~ 167 (303)
T cd06592 107 KGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGI-DSFKFDAGEAS 167 (303)
T ss_pred CCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCC-cEEEeCCCCcc
Confidence 0001 277899999999999988877762 34667799996
No 78
>PRK14705 glycogen branching enzyme; Provisional
Probab=46.27 E-value=1e+02 Score=38.06 Aligned_cols=94 Identities=22% Similarity=0.298 Sum_probs=59.1
Q ss_pred hhchHHH-HHHHHHhCCCEEEecc--------cccccc------cCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEec
Q 036046 119 YRRYKED-MKAVKELGVDSYRFSI--------SWTRIL------PNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIF 183 (538)
Q Consensus 119 Y~~y~eD-i~lm~~lG~~~~Rfsi--------~Wsri~------P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~ 183 (538)
|.-..+. |.-+|+||++++-+.= +|- -. |++.. |. .+=++.+|++|.++||.+|+.+.
T Consensus 764 ~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swG-Y~~~~y~ap~~ry-Gt-----~~dfk~lVd~~H~~GI~VILD~V 836 (1224)
T PRK14705 764 YRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWG-YQVTSYFAPTSRF-GH-----PDEFRFLVDSLHQAGIGVLLDWV 836 (1224)
T ss_pred hHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCC-CCccccCCcCccc-CC-----HHHHHHHHHHHHHCCCEEEEEec
Confidence 3333445 6889999999987542 231 11 11111 32 23489999999999999999864
Q ss_pred --CCCCchHHHHh----------------hCC-------CCCchhHHHHHHHHHHHHHHhC
Q 036046 184 --HFDSPQGLQEK----------------YGG-------PLNRSFVDDFKDYAEICFKSFG 219 (538)
Q Consensus 184 --H~~~P~~l~~~----------------~gg-------w~~~~~~~~f~~ya~~~~~~fg 219 (538)
|+..=.|.... +.. +.++++++.+.+=+..-+++|+
T Consensus 837 ~nH~~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 837 PAHFPKDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred cccCCcchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 54211111101 112 3467888999999999999996
No 79
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=46.05 E-value=56 Score=32.78 Aligned_cols=59 Identities=25% Similarity=0.265 Sum_probs=46.0
Q ss_pred HHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEe
Q 036046 123 KEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTI 182 (538)
Q Consensus 123 ~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 182 (538)
.+|++++.+.|++..|+.++.|-+.-.... +.=-.++++-..++++.+++.|+++.+++
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~-~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 130 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSDIHLAHKL-GKDRAWVLDQLRRLVGRAKDRGLFVSVGA 130 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 789999999999999999988766433211 22234677889999999999999987665
No 80
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=45.77 E-value=91 Score=32.66 Aligned_cols=71 Identities=15% Similarity=0.082 Sum_probs=49.0
Q ss_pred HHHHHHHHHcCCEEEEEecCCCC-----chHHHHh------------------------hCCCCCchhHHHHHHHHHHHH
Q 036046 165 NSLIDELIKYGIKPFVTIFHFDS-----PQGLQEK------------------------YGGPLNRSFVDDFKDYAEICF 215 (538)
Q Consensus 165 ~~~i~~l~~~gI~p~vtL~H~~~-----P~~l~~~------------------------~ggw~~~~~~~~f~~ya~~~~ 215 (538)
+.||++|++.|++.++.+.-+-. |..-+-+ +-.+.||+.+++|.+..+.+.
T Consensus 67 ~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 146 (339)
T cd06603 67 EKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDK 146 (339)
T ss_pred HHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHh
Confidence 67999999999998777764422 2221100 113789999999999888776
Q ss_pred HHhCC-ccceEEeeccchhhh
Q 036046 216 KSFGD-RVKNWMTINEPLIAS 235 (538)
Q Consensus 216 ~~fgd-~V~~W~t~NEp~~~~ 235 (538)
...+. -+-+|+=+|||.++.
T Consensus 147 ~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 147 YKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred hcccCCCceEEeccCCccccC
Confidence 64432 356889999998753
No 81
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=45.74 E-value=87 Score=33.12 Aligned_cols=57 Identities=18% Similarity=0.328 Sum_probs=45.6
Q ss_pred HHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCC
Q 036046 126 MKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDS 187 (538)
Q Consensus 126 i~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~ 187 (538)
++.++++|.+++-+-+-|. |+. ...+|.+-+++..++.++|.+.||.-++-+.-++.
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~--~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~ 168 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDE--DDAINDRKHAFVERVGAECRANDIPFFLEPLTYDG 168 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCc--chHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCC
Confidence 5779999999999999887 553 13467888899999999999999987775534433
No 82
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=44.96 E-value=84 Score=33.78 Aligned_cols=51 Identities=16% Similarity=0.384 Sum_probs=40.3
Q ss_pred hchHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEe
Q 036046 120 RRYKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTI 182 (538)
Q Consensus 120 ~~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 182 (538)
..|++||++++++||++|=+.|- .. ...+. +....+.+...+.|.+.++.+
T Consensus 17 ~dw~~di~~A~~~GIDgFaLNig------~~---d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 17 EDWEADIRLAQAAGIDGFALNIG------SS---DSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred HHHHHHHHHHHHcCCCEEEEecc------cC---CcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 45899999999999999999885 11 23444 557888889999998888776
No 83
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=44.82 E-value=80 Score=34.88 Aligned_cols=56 Identities=30% Similarity=0.352 Sum_probs=41.2
Q ss_pred hhhchHHH-----HHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCc
Q 036046 118 SYRRYKED-----MKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSP 188 (538)
Q Consensus 118 ~Y~~y~eD-----i~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P 188 (538)
.|..|.+| ++.+.+.|++.+|+.++-+. ++-....++..+++|+....++.+-..|
T Consensus 88 G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd---------------~~n~~~~i~~ak~~G~~v~~~i~~t~~p 148 (467)
T PRK14041 88 GYRHYADDVVELFVKKVAEYGLDIIRIFDALND---------------IRNLEKSIEVAKKHGAHVQGAISYTVSP 148 (467)
T ss_pred CcccccchhhHHHHHHHHHCCcCEEEEEEeCCH---------------HHHHHHHHHHHHHCCCEEEEEEEeccCC
Confidence 46667888 99999999999999985543 1335667788888888877777654335
No 84
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=44.79 E-value=54 Score=36.16 Aligned_cols=56 Identities=23% Similarity=0.372 Sum_probs=43.3
Q ss_pred hhhchHHH-----HHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCc
Q 036046 118 SYRRYKED-----MKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSP 188 (538)
Q Consensus 118 ~Y~~y~eD-----i~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P 188 (538)
.|..|.+| ++++++.|++.+|..-.. |. ++-....|+.+++.|....+++.+-+.|
T Consensus 98 gy~~ypddvv~~fv~~a~~~Gidi~Rifd~l-------------nd--~~n~~~ai~~ak~~G~~~~~~i~yt~sp 158 (468)
T PRK12581 98 GYRHYADDIVDKFISLSAQNGIDVFRIFDAL-------------ND--PRNIQQALRAVKKTGKEAQLCIAYTTSP 158 (468)
T ss_pred CccCCcchHHHHHHHHHHHCCCCEEEEcccC-------------CC--HHHHHHHHHHHHHcCCEEEEEEEEEeCC
Confidence 47778888 999999999999987532 21 2446778888888999888888886666
No 85
>PRK12568 glycogen branching enzyme; Provisional
Probab=44.31 E-value=87 Score=36.57 Aligned_cols=102 Identities=15% Similarity=0.214 Sum_probs=63.4
Q ss_pred hhchHHH-HHHHHHhCCCEEEecc--------cccc-----cccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEec-
Q 036046 119 YRRYKED-MKAVKELGVDSYRFSI--------SWTR-----ILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIF- 183 (538)
Q Consensus 119 Y~~y~eD-i~lm~~lG~~~~Rfsi--------~Wsr-----i~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~- 183 (538)
|....+. |.-+|+||++++-+.= +|.= .-|++.. |. .+=++.+|++|.++||.+|+.+.
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~-G~-----~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARH-GS-----PDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCccc-CC-----HHHHHHHHHHHHHCCCEEEEEecc
Confidence 4445555 6889999999986542 3420 1112111 33 34589999999999999999864
Q ss_pred -CCCC----------chHHH--H-h---hCC-------CCCchhHHHHHHHHHHHHHHhCCccceEEee
Q 036046 184 -HFDS----------PQGLQ--E-K---YGG-------PLNRSFVDDFKDYAEICFKSFGDRVKNWMTI 228 (538)
Q Consensus 184 -H~~~----------P~~l~--~-~---~gg-------w~~~~~~~~f~~ya~~~~~~fgd~V~~W~t~ 228 (538)
|+.- +...+ + . +.. +.++++++.+.+=+..-+++|+ |+.|-..
T Consensus 342 nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh--IDG~R~D 408 (730)
T PRK12568 342 AHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH--LDGLRVD 408 (730)
T ss_pred ccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC--ceEEEEc
Confidence 4321 11010 0 0 112 3467888999999999999986 5555443
No 86
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=43.75 E-value=36 Score=38.22 Aligned_cols=67 Identities=21% Similarity=0.285 Sum_probs=42.2
Q ss_pred hhhhchHHHHHHHHHhCCCEEEecccccccccCCCC--C--CCCCh--hHHHHHHHHHHHHHHcCCEEEEEec
Q 036046 117 DSYRRYKEDMKAVKELGVDSYRFSISWTRILPNGSL--S--GGVNQ--MGIDHYNSLIDELIKYGIKPFVTIF 183 (538)
Q Consensus 117 d~Y~~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~--~--g~~n~--~gl~~y~~~i~~l~~~gI~p~vtL~ 183 (538)
..+.-..+-++-+++||+++.=++=-...-.-.... . -.+|+ -..+=++++|+++.++||++|+.+.
T Consensus 24 G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 24 GDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred cCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 345556777899999999998776433221100000 0 01111 1235589999999999999999863
No 87
>PLN00196 alpha-amylase; Provisional
Probab=43.54 E-value=51 Score=35.91 Aligned_cols=65 Identities=12% Similarity=0.157 Sum_probs=44.0
Q ss_pred hhhchHHHHHHHHHhCCCEEEecccccccccCCC-CC--CCCCh---hHHHHHHHHHHHHHHcCCEEEEEe
Q 036046 118 SYRRYKEDMKAVKELGVDSYRFSISWTRILPNGS-LS--GGVNQ---MGIDHYNSLIDELIKYGIKPFVTI 182 (538)
Q Consensus 118 ~Y~~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~-~~--g~~n~---~gl~~y~~~i~~l~~~gI~p~vtL 182 (538)
+|....+.+.-+++||+++.=++=......+.|= .. -.+|. -..+=+++||+++.++||++|+..
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4666788899999999999988865543322220 00 01221 112348999999999999999985
No 88
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=43.28 E-value=1.6e+02 Score=30.97 Aligned_cols=86 Identities=24% Similarity=0.323 Sum_probs=62.8
Q ss_pred ccchhhhchHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHH
Q 036046 114 TAIDSYRRYKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQE 193 (538)
Q Consensus 114 ~a~d~Y~~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~ 193 (538)
+|-=||+ |+-= -...+.|+..+|+. + |++-.+ +....+++.++++||-.=+...|-.|.+-+.+
T Consensus 78 VaDiHf~-~rla-~~~~~~g~~k~RIN---------P---GNig~~--~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ 141 (361)
T COG0821 78 VADIHFD-YRLA-LEAAECGVDKVRIN---------P---GNIGFK--DRVREVVEAAKDKGIPIRIGVNAGSLEKRLLE 141 (361)
T ss_pred EEEeecc-HHHH-HHhhhcCcceEEEC---------C---cccCcH--HHHHHHHHHHHHcCCCEEEecccCchhHHHHH
Confidence 3444666 4433 33446679999863 2 444332 36899999999999999999999999999999
Q ss_pred hhCCCCCchhHHHHHHHHHHHH
Q 036046 194 KYGGPLNRSFVDDFKDYAEICF 215 (538)
Q Consensus 194 ~~ggw~~~~~~~~f~~ya~~~~ 215 (538)
+||+-..+..++--..+|+.+-
T Consensus 142 ky~~pt~ealveSAl~~a~~~e 163 (361)
T COG0821 142 KYGGPTPEALVESALEHAELLE 163 (361)
T ss_pred HhcCCCHHHHHHHHHHHHHHHH
Confidence 9987766666666666666554
No 89
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=42.97 E-value=13 Score=30.85 Aligned_cols=19 Identities=37% Similarity=0.618 Sum_probs=14.0
Q ss_pred HHHHhCC--ccceEEeecc-ch
Q 036046 214 CFKSFGD--RVKNWMTINE-PL 232 (538)
Q Consensus 214 ~~~~fgd--~V~~W~t~NE-p~ 232 (538)
++.+||+ +|.+|-.+|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 4567775 7999999999 76
No 90
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=42.80 E-value=77 Score=37.68 Aligned_cols=57 Identities=26% Similarity=0.324 Sum_probs=42.8
Q ss_pred hhchHHHHHHHHHhCCCEEEecc---------------cccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEec
Q 036046 119 YRRYKEDMKAVKELGVDSYRFSI---------------SWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIF 183 (538)
Q Consensus 119 Y~~y~eDi~lm~~lG~~~~Rfsi---------------~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~ 183 (538)
+....+-+.-+++||+++.=+|= .+.+|.|.- | +.+=++++++++.++||.+|+.+-
T Consensus 19 f~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~l---G-----t~e~f~~Lv~aah~~Gi~VIlDiV 90 (879)
T PRK14511 19 FDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPEL---G-----GEEGLRRLAAALRAHGMGLILDIV 90 (879)
T ss_pred HHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCC---C-----CHHHHHHHHHHHHHCCCEEEEEec
Confidence 45578889999999999986654 333444443 3 235589999999999999999863
No 91
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=42.56 E-value=40 Score=38.02 Aligned_cols=64 Identities=17% Similarity=0.412 Sum_probs=43.0
Q ss_pred hhhhchHHHHHHHHHhCCCEEEecccccccccCCCCCC-------CCCh--hHHHHHHHHHHHHHHcCCEEEEEec
Q 036046 117 DSYRRYKEDMKAVKELGVDSYRFSISWTRILPNGSLSG-------GVNQ--MGIDHYNSLIDELIKYGIKPFVTIF 183 (538)
Q Consensus 117 d~Y~~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g-------~~n~--~gl~~y~~~i~~l~~~gI~p~vtL~ 183 (538)
.-+.-..+.++-+++||+++.=++=-+.. |... .| .+|+ -..+=+++||+++.++||++|+.+.
T Consensus 30 Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~-~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 30 GDLRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVD-NGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred cCHHHHHHhhHHHHhCCCCEEEECCCCCC--CCCC-CCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 44556778899999999999987654321 2110 01 0111 1234589999999999999999874
No 92
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=42.34 E-value=1.3e+02 Score=31.60 Aligned_cols=69 Identities=17% Similarity=0.074 Sum_probs=47.4
Q ss_pred HHHHHHHHHcCCEEEEEecCCCCc--------hHHHH--h----------------------hCCCCCchhHHHHHHHHH
Q 036046 165 NSLIDELIKYGIKPFVTIFHFDSP--------QGLQE--K----------------------YGGPLNRSFVDDFKDYAE 212 (538)
Q Consensus 165 ~~~i~~l~~~gI~p~vtL~H~~~P--------~~l~~--~----------------------~ggw~~~~~~~~f~~ya~ 212 (538)
++||++|++.|++.++.+.-+-.+ .+-+. + +-.++||+.+++|.+..+
T Consensus 69 ~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~ 148 (339)
T cd06602 69 PEFVDELHANGQHYVPILDPAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIK 148 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHH
Confidence 889999999999988877544332 22110 0 013778999999988887
Q ss_pred HHHHHhCCccceEEeeccchhh
Q 036046 213 ICFKSFGDRVKNWMTINEPLIA 234 (538)
Q Consensus 213 ~~~~~fgd~V~~W~t~NEp~~~ 234 (538)
.++...|- --+|+=+|||..+
T Consensus 149 ~~~~~~Gv-dg~w~D~~Ep~~~ 169 (339)
T cd06602 149 DFHDQVPF-DGLWIDMNEPSNF 169 (339)
T ss_pred HHHhcCCC-cEEEecCCCCchH
Confidence 77766652 3567788998643
No 93
>PRK14706 glycogen branching enzyme; Provisional
Probab=42.04 E-value=98 Score=35.62 Aligned_cols=87 Identities=21% Similarity=0.261 Sum_probs=53.4
Q ss_pred HHHHHhCCCEEEecc--------cccc-----cccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEec--CCC-----
Q 036046 127 KAVKELGVDSYRFSI--------SWTR-----ILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIF--HFD----- 186 (538)
Q Consensus 127 ~lm~~lG~~~~Rfsi--------~Wsr-----i~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~--H~~----- 186 (538)
.-+|+||++++-+.= +|.- .-|++.. |. .+=++.+|++|.++||.+|+.+. |+.
T Consensus 175 ~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~-g~-----~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~ 248 (639)
T PRK14706 175 EYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRL-GT-----PEDFKYLVNHLHGLGIGVILDWVPGHFPTDESG 248 (639)
T ss_pred HHHHHcCCCEEEccchhcCCCCCCCCcCccccccccccc-CC-----HHHHHHHHHHHHHCCCEEEEEecccccCcchhh
Confidence 568999999987542 1210 0011100 21 23479999999999999999854 432
Q ss_pred ------CchH-HHHhhCC----C-------CCchhHHHHHHHHHHHHHHhC
Q 036046 187 ------SPQG-LQEKYGG----P-------LNRSFVDDFKDYAEICFKSFG 219 (538)
Q Consensus 187 ------~P~~-l~~~~gg----w-------~~~~~~~~f~~ya~~~~~~fg 219 (538)
.|.+ ..+...| | .++++++.+.+=|+.-+++|+
T Consensus 249 l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 249 LAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred hhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 1211 0110011 2 267889999999999999996
No 94
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=41.52 E-value=60 Score=37.64 Aligned_cols=57 Identities=23% Similarity=0.380 Sum_probs=40.3
Q ss_pred HHHHHHhCCCEEE----ecccccccccCCCCC----------------CCCCh---hHHHHHHHHHHHHHHcCCEEEEEe
Q 036046 126 MKAVKELGVDSYR----FSISWTRILPNGSLS----------------GGVNQ---MGIDHYNSLIDELIKYGIKPFVTI 182 (538)
Q Consensus 126 i~lm~~lG~~~~R----fsi~Wsri~P~~~~~----------------g~~n~---~gl~~y~~~i~~l~~~gI~p~vtL 182 (538)
|+-+|+|||+++. +++.+.+...+.... -..|. ..+.=++.||++|.++||++|+.+
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 9999999999999 345555555422101 11122 246668999999999999999986
No 95
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=41.38 E-value=55 Score=38.30 Aligned_cols=95 Identities=15% Similarity=0.247 Sum_probs=60.4
Q ss_pred hhhhchHH-HHHHHHHhCCCEEEecccccc---------------cccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEE
Q 036046 117 DSYRRYKE-DMKAVKELGVDSYRFSISWTR---------------ILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFV 180 (538)
Q Consensus 117 d~Y~~y~e-Di~lm~~lG~~~~Rfsi~Wsr---------------i~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~v 180 (538)
..|.-+.+ -+.-+|+||++++-+.=-... +.|.- |. .+=++++|++|.++||.+|+
T Consensus 247 gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~---Gt-----p~dlk~LVd~aH~~GI~Vil 318 (758)
T PLN02447 247 NSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRS---GT-----PEDLKYLIDKAHSLGLRVLM 318 (758)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccccc---CC-----HHHHHHHHHHHHHCCCEEEE
Confidence 34555433 489999999999987642221 11211 32 24489999999999999999
Q ss_pred EecC--CCC-------------chHHHHhhCC----C-------CCchhHHHHHHHHHHHHHHhC
Q 036046 181 TIFH--FDS-------------PQGLQEKYGG----P-------LNRSFVDDFKDYAEICFKSFG 219 (538)
Q Consensus 181 tL~H--~~~-------------P~~l~~~~gg----w-------~~~~~~~~f~~ya~~~~~~fg 219 (538)
.+.+ ..- +.|+.....| | .+++++..+.+=++.-+++|+
T Consensus 319 DvV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~ 383 (758)
T PLN02447 319 DVVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYK 383 (758)
T ss_pred EeccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 8753 211 2333211011 2 246788888888888888885
No 96
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=41.16 E-value=1.6e+02 Score=30.57 Aligned_cols=70 Identities=23% Similarity=0.133 Sum_probs=46.7
Q ss_pred HHHHHHHHHHcCCEEEEEecCCCC-----chHHHHh------------------------hCCCCCchhHHHHHHHHHHH
Q 036046 164 YNSLIDELIKYGIKPFVTIFHFDS-----PQGLQEK------------------------YGGPLNRSFVDDFKDYAEIC 214 (538)
Q Consensus 164 y~~~i~~l~~~gI~p~vtL~H~~~-----P~~l~~~------------------------~ggw~~~~~~~~f~~ya~~~ 214 (538)
-.+||+.|++.|++.++.+.-+-. |...+.. +-.|.||+.++.|.+..+.+
T Consensus 66 p~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~ 145 (317)
T cd06600 66 PKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEW 145 (317)
T ss_pred HHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHH
Confidence 368999999999997776643211 2221100 12378999999999888877
Q ss_pred HHHhCCccceEEeeccchhh
Q 036046 215 FKSFGDRVKNWMTINEPLIA 234 (538)
Q Consensus 215 ~~~fgd~V~~W~t~NEp~~~ 234 (538)
....|- .-+|+=+|||..+
T Consensus 146 ~~~~gv-dg~w~D~~Ep~~~ 164 (317)
T cd06600 146 LNSQGV-DGIWLDMNEPSDF 164 (317)
T ss_pred hhcCCC-ceEEeeCCCCccH
Confidence 665552 3477889998643
No 97
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=40.71 E-value=92 Score=35.50 Aligned_cols=92 Identities=14% Similarity=0.064 Sum_probs=51.9
Q ss_pred HHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCc----hHHHHh----
Q 036046 123 KEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSP----QGLQEK---- 194 (538)
Q Consensus 123 ~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P----~~l~~~---- 194 (538)
++|+++.++.|++.+|+..+.+-+ +-....|+..+++|....+++.+-+.| ..+.+.
T Consensus 100 ~~~v~~a~~~Gid~~rifd~lnd~---------------~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l 164 (593)
T PRK14040 100 ERFVERAVKNGMDVFRVFDAMNDP---------------RNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQL 164 (593)
T ss_pred HHHHHHHHhcCCCEEEEeeeCCcH---------------HHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHH
Confidence 444999999999999999644322 234556666677777655555432333 222111
Q ss_pred ------------hCCCCCchhHHHHHHHHHHHHHHhCCccceEEeeccchh
Q 036046 195 ------------YGGPLNRSFVDDFKDYAEICFKSFGDRVKNWMTINEPLI 233 (538)
Q Consensus 195 ------------~ggw~~~~~~~~f~~ya~~~~~~fgd~V~~W~t~NEp~~ 233 (538)
-.|-..|.- ..+.++.+-+++ +.--...+-|-..+
T Consensus 165 ~~~Gad~i~i~Dt~G~l~P~~---~~~lv~~lk~~~-~~pi~~H~Hnt~Gl 211 (593)
T PRK14040 165 EDMGVDSLCIKDMAGLLKPYA---AYELVSRIKKRV-DVPLHLHCHATTGL 211 (593)
T ss_pred HHcCCCEEEECCCCCCcCHHH---HHHHHHHHHHhc-CCeEEEEECCCCch
Confidence 134555543 334445555566 33345667777654
No 98
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=40.56 E-value=70 Score=32.86 Aligned_cols=87 Identities=14% Similarity=0.211 Sum_probs=61.0
Q ss_pred hHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecC-CCCchHHHHhhCCCCC
Q 036046 122 YKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFH-FDSPQGLQEKYGGPLN 200 (538)
Q Consensus 122 y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H-~~~P~~l~~~~ggw~~ 200 (538)
-.+|+++..+.|++.+++.++=|...-.... +.=-.+.++-..++|+..+++|+++.+++.. |..|. .|..+
T Consensus 81 ~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~-~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~------~~~~~ 153 (287)
T PRK05692 81 NLKGLEAALAAGADEVAVFASASEAFSQKNI-NCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPY------EGEVP 153 (287)
T ss_pred CHHHHHHHHHcCCCEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCC------CCCCC
Confidence 4889999999999999999855443222111 2234467888999999999999999887763 55552 34333
Q ss_pred chhHHHHHHHHHHHHHHhC
Q 036046 201 RSFVDDFKDYAEICFKSFG 219 (538)
Q Consensus 201 ~~~~~~f~~ya~~~~~~fg 219 (538)
.+.+.++++.+.+ .|
T Consensus 154 ---~~~~~~~~~~~~~-~G 168 (287)
T PRK05692 154 ---PEAVADVAERLFA-LG 168 (287)
T ss_pred ---HHHHHHHHHHHHH-cC
Confidence 5667777777764 35
No 99
>PLN02784 alpha-amylase
Probab=40.18 E-value=59 Score=38.49 Aligned_cols=66 Identities=20% Similarity=0.278 Sum_probs=46.3
Q ss_pred hhhhchHHHHHHHHHhCCCEEEecccccccccCCCC-C--CCCChh--HHHHHHHHHHHHHHcCCEEEEEe
Q 036046 117 DSYRRYKEDMKAVKELGVDSYRFSISWTRILPNGSL-S--GGVNQM--GIDHYNSLIDELIKYGIKPFVTI 182 (538)
Q Consensus 117 d~Y~~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~-~--g~~n~~--gl~~y~~~i~~l~~~gI~p~vtL 182 (538)
.+|....+.+.-+++||++++=++=......+.|=. . -.+|.+ ..+=++++|++|.++||.+|+.+
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 478899999999999999999877654433332200 0 001111 22458999999999999999985
No 100
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=40.05 E-value=48 Score=33.60 Aligned_cols=60 Identities=20% Similarity=0.165 Sum_probs=45.5
Q ss_pred HHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEec
Q 036046 123 KEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIF 183 (538)
Q Consensus 123 ~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~ 183 (538)
.+|++.+.+.|++.+|+.++=|...-.... +.=-.+.++...+++..+++.|+++.+++-
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~~~~~~~~-~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSPFLREASH-GKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 679999999999999998854443322211 222246788899999999999999999884
No 101
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=39.08 E-value=88 Score=34.21 Aligned_cols=104 Identities=14% Similarity=0.165 Sum_probs=62.7
Q ss_pred HHHHHHHHHhCCCEEEecc-cccc-cccCCCCCCC-CChhHHHHHHHHHHHHHHcC-CEEEEEecCCCCchHHHHhhCCC
Q 036046 123 KEDMKAVKELGVDSYRFSI-SWTR-ILPNGSLSGG-VNQMGIDHYNSLIDELIKYG-IKPFVTIFHFDSPQGLQEKYGGP 198 (538)
Q Consensus 123 ~eDi~lm~~lG~~~~Rfsi-~Wsr-i~P~~~~~g~-~n~~gl~~y~~~i~~l~~~g-I~p~vtL~H~~~P~~l~~~~ggw 198 (538)
+|.+++|+++|+|-+.+++ |-+. +...- |+ .+. +-..+.|+.+++.| +.+.+.| =+++|.
T Consensus 163 ~e~l~~l~~aGvnRiSiGVQSf~d~vLk~l---gR~~~~---~~~~~~i~~l~~~g~~~v~~Dl-I~GlPg--------- 226 (449)
T PRK09058 163 DEKADAALDAGANRFSIGVQSFNTQVRRRA---GRKDDR---EEVLARLEELVARDRAAVVCDL-IFGLPG--------- 226 (449)
T ss_pred HHHHHHHHHcCCCEEEecCCcCCHHHHHHh---CCCCCH---HHHHHHHHHHHhCCCCcEEEEE-EeeCCC---------
Confidence 6789999999999888888 4422 22211 21 122 44567889999999 5555544 345553
Q ss_pred CCchhHHHHHHHHHHHHHHhCCccceEEeeccchhhhhcccccCcCC
Q 036046 199 LNRSFVDDFKDYAEICFKSFGDRVKNWMTINEPLIASKYGYESGTAA 245 (538)
Q Consensus 199 ~~~~~~~~f~~ya~~~~~~fgd~V~~W~t~NEp~~~~~~gy~~G~~p 245 (538)
++.+.|.+=.+.+.+-=-+.|..+...-||++.....+..|.++
T Consensus 227 ---qT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~ 270 (449)
T PRK09058 227 ---QTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLP 270 (449)
T ss_pred ---CCHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCC
Confidence 23444444455555433467888888888886433333345544
No 102
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=39.06 E-value=1.8e+02 Score=30.23 Aligned_cols=110 Identities=16% Similarity=0.171 Sum_probs=62.6
Q ss_pred hHHHHHHHHHhCCC--EEEecccccccccCCCCCC--CCChhHHHHHHHHHHHHHHcCCEEEEEecCC---CCchHHHHh
Q 036046 122 YKEDMKAVKELGVD--SYRFSISWTRILPNGSLSG--GVNQMGIDHYNSLIDELIKYGIKPFVTIFHF---DSPQGLQEK 194 (538)
Q Consensus 122 y~eDi~lm~~lG~~--~~Rfsi~Wsri~P~~~~~g--~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~---~~P~~l~~~ 194 (538)
..+-++.+++.|+. ++=+.+.|......+...| .+|.+-.---++||+.|+++|++.++.+.-+ +.|..-+-+
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~ 105 (317)
T cd06598 26 VDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAV 105 (317)
T ss_pred HHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHH
Confidence 35556666666654 5555556643222110001 1222211223689999999999988877643 334321100
Q ss_pred ---h----------------------CCCCCchhHHHHHHHHHHHHHHhCCccc-eEEeeccchhh
Q 036046 195 ---Y----------------------GGPLNRSFVDDFKDYAEICFKSFGDRVK-NWMTINEPLIA 234 (538)
Q Consensus 195 ---~----------------------ggw~~~~~~~~f~~ya~~~~~~fgd~V~-~W~t~NEp~~~ 234 (538)
| -.++||+.++.|.+..+.+ ... -|+ +|+=+|||..+
T Consensus 106 ~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~-~~~--Gvdg~w~D~~Ep~~~ 168 (317)
T cd06598 106 KAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL-IDQ--GVTGWWGDLGEPEVH 168 (317)
T ss_pred hCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh-hhC--CccEEEecCCCcccc
Confidence 0 0366999999998877765 333 354 57788999654
No 103
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=38.91 E-value=1.6e+02 Score=31.87 Aligned_cols=93 Identities=18% Similarity=0.220 Sum_probs=61.9
Q ss_pred hchHHHHHHHHHhCCCEEEeccccccc-----------ccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEe------
Q 036046 120 RRYKEDMKAVKELGVDSYRFSISWTRI-----------LPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTI------ 182 (538)
Q Consensus 120 ~~y~eDi~lm~~lG~~~~Rfsi~Wsri-----------~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL------ 182 (538)
....+.++.++++|++.+-+.--|..- .|+. .++ +.| ...+++.+.+.|+++=+=+
T Consensus 58 ~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~---~kF-P~G---l~~l~~~i~~~Gmk~GlW~ePe~v~ 130 (394)
T PF02065_consen 58 EKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDP---KKF-PNG---LKPLADYIHSLGMKFGLWFEPEMVS 130 (394)
T ss_dssp HHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBT---TTS-TTH---HHHHHHHHHHTT-EEEEEEETTEEE
T ss_pred HHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeECh---hhh-CCc---HHHHHHHHHHCCCeEEEEecccccc
Confidence 346777899999999998888899643 3332 112 224 5889999999999965522
Q ss_pred ----cCCCCchHHHHhhC------------CCCCchhHHHHHHHHHHHHHHhC
Q 036046 183 ----FHFDSPQGLQEKYG------------GPLNRSFVDDFKDYAEICFKSFG 219 (538)
Q Consensus 183 ----~H~~~P~~l~~~~g------------gw~~~~~~~~f~~ya~~~~~~fg 219 (538)
..-..|.|+...-+ ...+|+++++..+-...+++.+|
T Consensus 131 ~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g 183 (394)
T PF02065_consen 131 PDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWG 183 (394)
T ss_dssp SSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT
T ss_pred chhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcC
Confidence 12357888753201 14578889998888888888887
No 104
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=38.59 E-value=79 Score=33.53 Aligned_cols=85 Identities=12% Similarity=0.077 Sum_probs=61.2
Q ss_pred hHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecC-CCCchHHHHhhCCCCC
Q 036046 122 YKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFH-FDSPQGLQEKYGGPLN 200 (538)
Q Consensus 122 y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H-~~~P~~l~~~~ggw~~ 200 (538)
=.+|++++.+.|++.+++.++=|...-.... +.=-.+.++-+.++|+.++++|+++.+++.. |..|. .|-.+
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~-~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~------~~r~~ 195 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNI-NCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPI------EGPVP 195 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCc------cCCCC
Confidence 5899999999999999999866655444321 3334678899999999999999999877753 55552 33333
Q ss_pred chhHHHHHHHHHHHHH
Q 036046 201 RSFVDDFKDYAEICFK 216 (538)
Q Consensus 201 ~~~~~~f~~ya~~~~~ 216 (538)
++.+.++++.+.+
T Consensus 196 ---~~~l~~~~~~~~~ 208 (347)
T PLN02746 196 ---PSKVAYVAKELYD 208 (347)
T ss_pred ---HHHHHHHHHHHHH
Confidence 5666677777654
No 105
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=38.46 E-value=1.8e+02 Score=30.87 Aligned_cols=89 Identities=24% Similarity=0.365 Sum_probs=62.1
Q ss_pred CcccchhhhchHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHH
Q 036046 112 LITAIDSYRRYKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGL 191 (538)
Q Consensus 112 ~~~a~d~Y~~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l 191 (538)
+-+|.=||+ |+-=+ ...+.|++..|+. | |++-. --+..+.+++.++++|+..=+...|-.++.-+
T Consensus 82 PlvADIHFd-~~lAl-~a~~~G~~~iRIN-------P-----GNig~-~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~ 146 (360)
T PRK00366 82 PLVADIHFD-YRLAL-AAAEAGADALRIN-------P-----GNIGK-RDERVREVVEAAKDYGIPIRIGVNAGSLEKDL 146 (360)
T ss_pred CEEEecCCC-HHHHH-HHHHhCCCEEEEC-------C-----CCCCc-hHHHHHHHHHHHHHCCCCEEEecCCccChHHH
Confidence 334555654 23222 2346799999653 3 54521 02678999999999999999999999999999
Q ss_pred HHhhCCCCCchhHHHHHHHHHHHH
Q 036046 192 QEKYGGPLNRSFVDDFKDYAEICF 215 (538)
Q Consensus 192 ~~~~ggw~~~~~~~~f~~ya~~~~ 215 (538)
.++||+-..+.+++--.++++.|-
T Consensus 147 ~~~yg~~t~eamveSAl~~~~~le 170 (360)
T PRK00366 147 LEKYGEPTPEALVESALRHAKILE 170 (360)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHH
Confidence 999976455666776666666553
No 106
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=37.77 E-value=81 Score=33.50 Aligned_cols=81 Identities=19% Similarity=0.174 Sum_probs=55.6
Q ss_pred HHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCCCCch
Q 036046 123 KEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGPLNRS 202 (538)
Q Consensus 123 ~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw~~~~ 202 (538)
++||+.+.+.|++.+|+.++-|.+.-.... +.=-.+.++-..+.|+.++++|+++.++... .+..+
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~-~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed-----------~~r~~-- 140 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSDLQIEAKL-RKDRAWVLERLARLVSFARDRGLFVSVGGED-----------ASRAD-- 140 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCHHHHHHHh-CcCHHHHHHHHHHHHHHHHhCCCEEEEeecC-----------CCCCC--
Confidence 899999999999999999977654333211 2223457788899999999999998776532 22222
Q ss_pred hHHHHHHHHHHHHHHhC
Q 036046 203 FVDDFKDYAEICFKSFG 219 (538)
Q Consensus 203 ~~~~f~~ya~~~~~~fg 219 (538)
.+.+.++++.+.+ .|
T Consensus 141 -~~~l~~~~~~~~~-~G 155 (365)
T TIGR02660 141 -PDFLVELAEVAAE-AG 155 (365)
T ss_pred -HHHHHHHHHHHHH-cC
Confidence 4556666666543 45
No 107
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=37.68 E-value=1.9e+02 Score=30.02 Aligned_cols=109 Identities=17% Similarity=0.250 Sum_probs=71.1
Q ss_pred HHHHHHHHHhCCC-EEEecc-cc-ccccc-CCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCC
Q 036046 123 KEDMKAVKELGVD-SYRFSI-SW-TRILP-NGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGP 198 (538)
Q Consensus 123 ~eDi~lm~~lG~~-~~Rfsi-~W-sri~P-~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw 198 (538)
+|.+++|+++|++ .+-+++ +- .++.- .-. +| .+. +-+.+.++.++++||.+.+.+. +.+|. .
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~in-Kg-~t~---~~~~~ai~~~~~~Gi~v~~~~i-~G~P~--------~ 182 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSIN-KG-STF---EDFIRAAELARKYGAGVKAYLL-FKPPF--------L 182 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhC-CC-CCH---HHHHHHHHHHHHcCCcEEEEEE-ecCCC--------C
Confidence 7889999999998 466666 22 22221 110 12 333 5678999999999999666553 23452 1
Q ss_pred CCchhHHHHHHHHHHHHHHhCCccceEEeeccchhhhhcccccCcCCC
Q 036046 199 LNRSFVDDFKDYAEICFKSFGDRVKNWMTINEPLIASKYGYESGTAAP 246 (538)
Q Consensus 199 ~~~~~~~~f~~ya~~~~~~fgd~V~~W~t~NEp~~~~~~gy~~G~~pP 246 (538)
...+.++.+.+.++.+.+ +++.|....+.=+|++....-|..|.|.|
T Consensus 183 se~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 183 SEKEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred ChhhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 223677888888887765 45888888887788765444466677655
No 108
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=37.35 E-value=1.5e+02 Score=31.90 Aligned_cols=104 Identities=16% Similarity=0.238 Sum_probs=61.3
Q ss_pred HHHHHHHHHhCCCEEEecc-ccc-ccccCCCCCCCCChhHHHHHHHHHHHHHHcCCE-EEEEecCCCCchHHHHhhCCCC
Q 036046 123 KEDMKAVKELGVDSYRFSI-SWT-RILPNGSLSGGVNQMGIDHYNSLIDELIKYGIK-PFVTIFHFDSPQGLQEKYGGPL 199 (538)
Q Consensus 123 ~eDi~lm~~lG~~~~Rfsi-~Ws-ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~-p~vtL~H~~~P~~l~~~~ggw~ 199 (538)
++.+++|+++|+|-+-+++ +-+ ++...-. -..+. +-..+.++.+++.|+. +.+.| =+++|.
T Consensus 115 ~e~l~~l~~~GvnrislGvQS~~d~~L~~l~--R~~~~---~~~~~ai~~l~~~G~~~v~~dl-I~GlPg---------- 178 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLGVQAFQDELLALCG--RSHRV---KDIFAAVDLIHQAGIENFSLDL-ISGLPH---------- 178 (400)
T ss_pred HHHHHHHHHCCCCEEEEEcccCCHHHHHHhC--CCCCH---HHHHHHHHHHHHcCCCeEEEEe-ecCCCC----------
Confidence 6889999999999777766 321 2222210 11222 3356788899999998 44554 346663
Q ss_pred CchhHHHHHHHHHHHHHHhCCccceEEeeccchhhhhcccccCcC
Q 036046 200 NRSFVDDFKDYAEICFKSFGDRVKNWMTINEPLIASKYGYESGTA 244 (538)
Q Consensus 200 ~~~~~~~f~~ya~~~~~~fgd~V~~W~t~NEp~~~~~~gy~~G~~ 244 (538)
++.+.+.+=++.+.+-=-++|......-||++.....+..|.+
T Consensus 179 --qt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~ 221 (400)
T PRK07379 179 --QTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKA 221 (400)
T ss_pred --CCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCC
Confidence 2344455444444443336777777778888654444444543
No 109
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=36.95 E-value=1.5e+02 Score=32.68 Aligned_cols=52 Identities=19% Similarity=0.165 Sum_probs=39.9
Q ss_pred hHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCc
Q 036046 122 YKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSP 188 (538)
Q Consensus 122 y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P 188 (538)
.++||+.+.+.|++.+|+.++-+.+ .-....|+.++++|+.+.+++..-+-|
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~---------------~n~~~~v~~ak~~G~~v~~~i~~t~~p 149 (448)
T PRK12331 98 VESFVQKSVENGIDIIRIFDALNDV---------------RNLETAVKATKKAGGHAQVAISYTTSP 149 (448)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcH---------------HHHHHHHHHHHHcCCeEEEEEEeecCC
Confidence 3677899999999999999855432 114568899999999888887765556
No 110
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=36.85 E-value=1.1e+02 Score=31.02 Aligned_cols=86 Identities=13% Similarity=0.186 Sum_probs=60.1
Q ss_pred HHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEec-CCCCchHHHHhhCCCCCc
Q 036046 123 KEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIF-HFDSPQGLQEKYGGPLNR 201 (538)
Q Consensus 123 ~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~-H~~~P~~l~~~~ggw~~~ 201 (538)
++|++.+.+.|++.+++.++=|...-.... +.=-.+.++...+.++.++++|+++.+++. .|+.|. .|-.
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~-~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~------~~~~-- 146 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSASETFSQKNI-NCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPY------EGEV-- 146 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHc-CCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCC------CCCC--
Confidence 779999999999999999855543222211 222356778899999999999999998876 455552 2322
Q ss_pred hhHHHHHHHHHHHHHHhC
Q 036046 202 SFVDDFKDYAEICFKSFG 219 (538)
Q Consensus 202 ~~~~~f~~ya~~~~~~fg 219 (538)
..+.+.++++.+.+ .|
T Consensus 147 -~~~~~~~~~~~~~~-~G 162 (274)
T cd07938 147 -PPERVAEVAERLLD-LG 162 (274)
T ss_pred -CHHHHHHHHHHHHH-cC
Confidence 35667777777654 44
No 111
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=36.83 E-value=1.1e+02 Score=30.04 Aligned_cols=69 Identities=16% Similarity=0.203 Sum_probs=43.1
Q ss_pred hhhhchHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEE-ecCCCCc
Q 036046 117 DSYRRYKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVT-IFHFDSP 188 (538)
Q Consensus 117 d~Y~~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vt-L~H~~~P 188 (538)
+.-..+++=|+++++||.+..++...+ . |......+.....++..+++.+.+.+.||...+= +.+++.|
T Consensus 81 ~~~~~~~~~i~~a~~lg~~~i~~~~g~--~-~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 81 EFREGVALAIAYARALGCPQVNCLAGK--R-PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECcCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 344667788999999999999864322 1 1110001122344566788888899999986663 3445544
No 112
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=36.40 E-value=2e+02 Score=29.86 Aligned_cols=70 Identities=11% Similarity=0.171 Sum_probs=45.1
Q ss_pred HHHHHHHHHHcCCEEEEEecCC---CCchHHHHh-----------------------hCCCCCchhHHHHHHHHHHHHHH
Q 036046 164 YNSLIDELIKYGIKPFVTIFHF---DSPQGLQEK-----------------------YGGPLNRSFVDDFKDYAEICFKS 217 (538)
Q Consensus 164 y~~~i~~l~~~gI~p~vtL~H~---~~P~~l~~~-----------------------~ggw~~~~~~~~f~~ya~~~~~~ 217 (538)
-.++|++|+++|++.++.+.-+ +.+.+-+-+ +-.|.||+.++.|.+..+..+..
T Consensus 68 p~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~ 147 (319)
T cd06591 68 PKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYD 147 (319)
T ss_pred HHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhc
Confidence 4789999999999988866422 112111000 11377899988887766655544
Q ss_pred hCCccceEEeeccchhh
Q 036046 218 FGDRVKNWMTINEPLIA 234 (538)
Q Consensus 218 fgd~V~~W~t~NEp~~~ 234 (538)
.|= --+|+=+|||..+
T Consensus 148 ~Gv-dg~w~D~~Ep~~~ 163 (319)
T cd06591 148 KGV-DAWWLDAAEPEYS 163 (319)
T ss_pred CCC-cEEEecCCCCCcc
Confidence 442 4577889999764
No 113
>PRK09505 malS alpha-amylase; Reviewed
Probab=35.82 E-value=72 Score=36.96 Aligned_cols=64 Identities=22% Similarity=0.374 Sum_probs=42.0
Q ss_pred hchHHHHHHHHHhCCCEEEecccccccc-----------cCCCCCC-------CCCh--hHHHHHHHHHHHHHHcCCEEE
Q 036046 120 RRYKEDMKAVKELGVDSYRFSISWTRIL-----------PNGSLSG-------GVNQ--MGIDHYNSLIDELIKYGIKPF 179 (538)
Q Consensus 120 ~~y~eDi~lm~~lG~~~~Rfsi~Wsri~-----------P~~~~~g-------~~n~--~gl~~y~~~i~~l~~~gI~p~ 179 (538)
.-..+-+.-+++||+++.=++=-...+. |.....| .+|. -..+=+++||+++.++||++|
T Consensus 230 ~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~Vi 309 (683)
T PRK09505 230 RGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRIL 309 (683)
T ss_pred HHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 3356678899999999998875444331 1000000 1222 134558999999999999999
Q ss_pred EEec
Q 036046 180 VTIF 183 (538)
Q Consensus 180 vtL~ 183 (538)
+.+.
T Consensus 310 lD~V 313 (683)
T PRK09505 310 FDVV 313 (683)
T ss_pred EEEC
Confidence 9863
No 114
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=35.82 E-value=1.5e+02 Score=31.25 Aligned_cols=91 Identities=16% Similarity=0.249 Sum_probs=55.1
Q ss_pred HHHHHHHHHhCCCEEEecc-ccc-ccccCCCCCCC-CChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCCC
Q 036046 123 KEDMKAVKELGVDSYRFSI-SWT-RILPNGSLSGG-VNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGPL 199 (538)
Q Consensus 123 ~eDi~lm~~lG~~~~Rfsi-~Ws-ri~P~~~~~g~-~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw~ 199 (538)
++.++.|+++|++.+.+++ +-+ ++...- |. .+. +-+.+.|+.+++.|+.++-.-.=+++|.
T Consensus 100 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l---gR~~~~---~~~~~ai~~l~~~G~~~v~~dli~GlPg---------- 163 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGVQSFRDDKLLFL---GRQHSA---KNIAPAIETALKSGIENISLDLMYGLPL---------- 163 (360)
T ss_pred HHHHHHHHHcCCCEEEEecccCChHHHHHh---CCCCCH---HHHHHHHHHHHHcCCCeEEEeccCCCCC----------
Confidence 6889999999999777777 342 333222 21 233 5577899999999997554433456664
Q ss_pred CchhHHHHHHHHHHHHHHhC-CccceEEeeccch
Q 036046 200 NRSFVDDFKDYAEICFKSFG-DRVKNWMTINEPL 232 (538)
Q Consensus 200 ~~~~~~~f~~ya~~~~~~fg-d~V~~W~t~NEp~ 232 (538)
++.+.+.+-.+.+.+ ++ +.+......=||+
T Consensus 164 --qt~~~~~~~l~~~~~-l~~~~is~y~l~~~~g 194 (360)
T TIGR00539 164 --QTLNSLKEELKLAKE-LPINHLSAYALSVEPN 194 (360)
T ss_pred --CCHHHHHHHHHHHHc-cCCCEEEeecceEcCC
Confidence 344555555555554 33 3444444444554
No 115
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=35.75 E-value=1e+02 Score=32.94 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=46.2
Q ss_pred HHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEe
Q 036046 123 KEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTI 182 (538)
Q Consensus 123 ~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 182 (538)
++|++.+.+.|++.+|++++-|.+.-.... +.--.+.++-..+.++.+++.|+++.++.
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~-~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ 136 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKL-KKTREEVLERMVEAVEYAKDHGLYVSFSA 136 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 789999999999999999976665333211 22345678889999999999999988874
No 116
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=35.55 E-value=1.5e+02 Score=30.04 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=50.2
Q ss_pred HHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCCCCch
Q 036046 123 KEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGPLNRS 202 (538)
Q Consensus 123 ~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw~~~~ 202 (538)
.+|++...+.|++.+|+++..+ .++-..++++.++++|+++.+++.+-.- .
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~---------------~~~~~~~~i~~ak~~G~~v~~~~~~a~~--------------~ 135 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH---------------EFDEALPLIKAIKEKGYEVFFNLMAISG--------------Y 135 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc---------------cHHHHHHHHHHHHHCCCeEEEEEEeecC--------------C
Confidence 5789999999999999987331 2466789999999999999999865321 2
Q ss_pred hHHHHHHHHHHHHHHhC
Q 036046 203 FVDDFKDYAEICFKSFG 219 (538)
Q Consensus 203 ~~~~f~~ya~~~~~~fg 219 (538)
..+.+.++++.+.+ +|
T Consensus 136 ~~~~~~~~~~~~~~-~g 151 (266)
T cd07944 136 SDEELLELLELVNE-IK 151 (266)
T ss_pred CHHHHHHHHHHHHh-CC
Confidence 35566777777654 45
No 117
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=35.34 E-value=1.5e+02 Score=30.41 Aligned_cols=84 Identities=15% Similarity=0.203 Sum_probs=57.5
Q ss_pred HHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCC----chHHHHhhCCCCCc
Q 036046 126 MKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDS----PQGLQEKYGGPLNR 201 (538)
Q Consensus 126 i~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~----P~~l~~~~ggw~~~ 201 (538)
.+.++.-+-+.-.++..|-.|-|++...+.. ..++++.++++|+++++++..++- +.-+.. -..++
T Consensus 16 ~~~~~~~~~~lt~v~p~w~~~~~~g~~~~~~-------~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~---~l~~~ 85 (313)
T cd02874 16 YESLRANAPYLTYIAPFWYGVDADGTLTGLP-------DERLIEAAKRRGVKPLLVITNLTNGNFDSELAHA---VLSNP 85 (313)
T ss_pred HHHHHHhcCCCCEEEEEEEEEcCCCCCCCCC-------CHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHH---HhcCH
Confidence 5666777777777888999998887432322 358899999999999999976641 111111 12356
Q ss_pred hhHHHHHHHHHHHHHHhC
Q 036046 202 SFVDDFKDYAEICFKSFG 219 (538)
Q Consensus 202 ~~~~~f~~ya~~~~~~fg 219 (538)
..++.|++=+-..++++|
T Consensus 86 ~~r~~fi~~iv~~l~~~~ 103 (313)
T cd02874 86 EARQRLINNILALAKKYG 103 (313)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 777778777777777775
No 118
>PLN02389 biotin synthase
Probab=34.94 E-value=1.1e+02 Score=32.81 Aligned_cols=57 Identities=21% Similarity=0.227 Sum_probs=42.6
Q ss_pred chHHHHHHHHHhCCCEEEecccccc-cccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEe
Q 036046 121 RYKEDMKAVKELGVDSYRFSISWTR-ILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTI 182 (538)
Q Consensus 121 ~y~eDi~lm~~lG~~~~Rfsi~Wsr-i~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 182 (538)
.-+|.++.||++|++.|-.+++=++ ++|.-. ..-++ +.+-+.++.+++.||++..++
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~--~~~s~---e~rl~ti~~a~~~Gi~v~sg~ 233 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVI--TTRSY---DDRLETLEAVREAGISVCSGG 233 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCcC--CCCCH---HHHHHHHHHHHHcCCeEeEEE
Confidence 4689999999999999999885233 555531 22244 668899999999999976664
No 119
>COG2951 MltB Membrane-bound lytic murein transglycosylase B [Cell envelope biogenesis, outer membrane]
Probab=34.76 E-value=47 Score=35.07 Aligned_cols=95 Identities=24% Similarity=0.322 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHcCCCe-----EEEeecCccccCCCCcCcC----cccChhhhHHHHHHHHHHHHHHHHcC-CC---EE
Q 036046 422 KGMQQVLEYVKNNYQNPA-----IYITENGVTEQRNDNLTLD----VALKDEHRVDFVLGHLYYLHEAIKNG-VN---VK 488 (538)
Q Consensus 422 ~GL~~~L~~l~~~Y~~pP-----I~ITENG~~~~~~~~~~~~----~~i~D~~Ri~yl~~hL~~~~kAi~dG-v~---v~ 488 (538)
.--...|+++.++|+-|+ |+=+|.|++.........+ -...|..|.+|.++.|.+.+|-+++| ++ .+
T Consensus 110 ~~~~~~l~~~e~~yGVp~~ii~aiWg~Et~fG~~~g~~~v~~ALaTLa~~~~rR~~~f~~eL~aaL~ii~~gdv~~~~~~ 189 (343)
T COG2951 110 AQYAAALARAERRYGVPAPILVAIWGMETGFGRVMGKFRVLDALATLAFADPRRAGFFRDELIAALKIIQDGDVDPLALK 189 (343)
T ss_pred HHHHHHHHHHHHHhCCCchheeeeehhhcccccccCccchHHHHhhhcccccchhhhhHHHHHHHHHHHhhcCCCccccc
Confidence 345568999999999753 4457888887543211111 02348999999999999999988876 77 44
Q ss_pred EEEeccCCCcccccCCCCC------ccceEEEeCCCCCccccCh
Q 036046 489 GYFYWSAFDDFEWGIGYLP------RFGLYFIDYNNNLTRIPKE 526 (538)
Q Consensus 489 GY~~WSl~Dn~EW~~Gy~~------RfGL~~VD~~~~~~R~pK~ 526 (538)
| +|+..+.. -|=.|.||++.+.+|-+..
T Consensus 190 G----------SwAGAmGq~QFmPss~~~YaVD~DGDG~~Diw~ 223 (343)
T COG2951 190 G----------SWAGAMGQTQFMPSSYLKYAVDGDGDGHRDIWN 223 (343)
T ss_pred c----------hhhhccCCcccCcHHHHHhhhcCCCCCccCCcc
Confidence 4 56543332 5667889999777887773
No 120
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=34.60 E-value=1.3e+02 Score=29.89 Aligned_cols=74 Identities=14% Similarity=0.133 Sum_probs=45.8
Q ss_pred ecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCCCCchhHHHHHHHHHHHHHHh
Q 036046 139 FSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGPLNRSFVDDFKDYAEICFKSF 218 (538)
Q Consensus 139 fsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~f 218 (538)
+.++|..+-++|.. .... .......+++.++++|+++++.+-.+....... -..++..++.|++=+-..+++|
T Consensus 26 v~~~f~~i~~~G~l--~~~~-~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~----~~~~~~~r~~fi~~lv~~~~~~ 98 (253)
T cd06545 26 INLAFANPDANGTL--NANP-VRSELNSVVNAAHAHNVKILISLAGGSPPEFTA----ALNDPAKRKALVDKIINYVVSY 98 (253)
T ss_pred EEEEEEEECCCCeE--EecC-cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchh----hhcCHHHHHHHHHHHHHHHHHh
Confidence 44456666666521 1211 113467889999999999999987665443221 1245677777776666666666
Q ss_pred C
Q 036046 219 G 219 (538)
Q Consensus 219 g 219 (538)
|
T Consensus 99 ~ 99 (253)
T cd06545 99 N 99 (253)
T ss_pred C
Confidence 5
No 121
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=34.30 E-value=58 Score=36.52 Aligned_cols=61 Identities=18% Similarity=0.338 Sum_probs=40.2
Q ss_pred hhchHHHHHHHHHhCCCEEEecccccccccCCCCC-C-------CCChh--HHHHHHHHHHHHHHcCCEEEEEec
Q 036046 119 YRRYKEDMKAVKELGVDSYRFSISWTRILPNGSLS-G-------GVNQM--GIDHYNSLIDELIKYGIKPFVTIF 183 (538)
Q Consensus 119 Y~~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~-g-------~~n~~--gl~~y~~~i~~l~~~gI~p~vtL~ 183 (538)
+.-..+-+.-+++||+++.=++=-. +.+..+ | .+|++ ..+=++++|+++.++||++|+.+.
T Consensus 27 l~gi~~~Ldyl~~LGv~~i~L~Pi~----~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V 97 (539)
T TIGR02456 27 FPGLTSKLDYLKWLGVDALWLLPFF----QSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLV 97 (539)
T ss_pred HHHHHHhHHHHHHCCCCEEEECCCc----CCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 4445677899999999998765422 111000 1 12221 234589999999999999999863
No 122
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=34.18 E-value=1.2e+02 Score=31.62 Aligned_cols=97 Identities=19% Similarity=0.179 Sum_probs=61.7
Q ss_pred hchHHHHHHHHHhCCCEEEecc--cccccccCC-----CCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCC------
Q 036046 120 RRYKEDMKAVKELGVDSYRFSI--SWTRILPNG-----SLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFD------ 186 (538)
Q Consensus 120 ~~y~eDi~lm~~lG~~~~Rfsi--~Wsri~P~~-----~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~------ 186 (538)
.+.++=++++++.|+|++=+.+ .+-.|.=.. ...|. ....+.=...+++.|+++||.||.-+.-|-
T Consensus 13 ~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga-~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~la~ 91 (316)
T PF13200_consen 13 ERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGA-VKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVLAE 91 (316)
T ss_pred HHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhccc-ccccccCHHHHHHHHHHCCCEEEEEEEEecChHHhh
Confidence 3578889999999999999988 555552211 00121 111123368899999999999998665432
Q ss_pred -CchHHHHhhC----------CCCCc---hhHHHHHHHHHHHHHH
Q 036046 187 -SPQGLQEKYG----------GPLNR---SFVDDFKDYAEICFKS 217 (538)
Q Consensus 187 -~P~~l~~~~g----------gw~~~---~~~~~f~~ya~~~~~~ 217 (538)
.|.|....-+ .|+|| ++.++-.+.|+.+++.
T Consensus 92 ~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~ 136 (316)
T PF13200_consen 92 AHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL 136 (316)
T ss_pred hChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc
Confidence 2333321111 27775 7777777877777743
No 123
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=34.18 E-value=70 Score=32.75 Aligned_cols=71 Identities=20% Similarity=0.388 Sum_probs=51.5
Q ss_pred hHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCCCCc
Q 036046 122 YKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGPLNR 201 (538)
Q Consensus 122 y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw~~~ 201 (538)
.++=+++++++||..+.+..- +.=+++.++||+++++.+.+++| ||.+|--..|.=++..|.-..+.
T Consensus 108 ~~~~f~~~~~~Gv~GvKidF~-----------~~d~Q~~v~~y~~i~~~AA~~~L--mvnfHg~~kPtG~~RTyPN~mT~ 174 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKIDFM-----------DRDDQEMVNWYEDILEDAAEYKL--MVNFHGATKPTGLRRTYPNLMTR 174 (273)
T ss_dssp HHHHHHHHHHCTEEEEEEE-------------SSTSHHHHHHHHHHHHHHHHTT---EEEETTS---TTHHHCSTTEEEE
T ss_pred HHHHHHHHHHcCCCEEeeCcC-----------CCCCHHHHHHHHHHHHHHHHcCc--EEEecCCcCCCcccccCccHHHH
Confidence 466799999999999998751 22478899999999999999999 78888777888888777666666
Q ss_pred hhHH
Q 036046 202 SFVD 205 (538)
Q Consensus 202 ~~~~ 205 (538)
|-+.
T Consensus 175 EgVr 178 (273)
T PF10566_consen 175 EGVR 178 (273)
T ss_dssp --S-
T ss_pred HHhh
Confidence 6554
No 124
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=33.23 E-value=1.1e+02 Score=30.16 Aligned_cols=57 Identities=12% Similarity=0.230 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCCCCchhHHHHHHHHHHHHHHhCCcc
Q 036046 163 HYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGPLNRSFVDDFKDYAEICFKSFGDRV 222 (538)
Q Consensus 163 ~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fgd~V 222 (538)
-.++.++.+++.|+.-+=--.+|.... ...-++-.+....+.+.+..+.| ..+|=+|
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~--~~~~~~~~~~~~~~~ld~~v~~a-~~~gi~v 78 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQ--EPNPGYNYDETYLARLDRIVDAA-QAYGIYV 78 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTS--TTSTTTSBTHHHHHHHHHHHHHH-HHTT-EE
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhc--CCCCCccccHHHHHHHHHHHHHH-HhCCCeE
Confidence 368899999999998444334442211 11112235566667777777766 3445444
No 125
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=33.13 E-value=2e+02 Score=30.59 Aligned_cols=93 Identities=11% Similarity=0.155 Sum_probs=59.0
Q ss_pred HHHHHHHHHhCCCEEEecc-ccc-ccccCCCCCCC-CChhHHHHHHHHHHHHHHcCCEE-EEEecCCCCchHHHHhhCCC
Q 036046 123 KEDMKAVKELGVDSYRFSI-SWT-RILPNGSLSGG-VNQMGIDHYNSLIDELIKYGIKP-FVTIFHFDSPQGLQEKYGGP 198 (538)
Q Consensus 123 ~eDi~lm~~lG~~~~Rfsi-~Ws-ri~P~~~~~g~-~n~~gl~~y~~~i~~l~~~gI~p-~vtL~H~~~P~~l~~~~ggw 198 (538)
++.++.|+++|++-+.+++ +=+ ++.-.- |. .+. +-..+.++.+++.|+.. -+.| =+++|.
T Consensus 103 ~~~l~~l~~~G~nrislGvQS~~~~~L~~l---~R~~~~---~~~~~ai~~~~~~g~~~v~~Dl-i~GlPg--------- 166 (370)
T PRK06294 103 ESYIRALALTGINRISIGVQTFDDPLLKLL---GRTHSS---SKAIDAVQECSEHGFSNLSIDL-IYGLPT--------- 166 (370)
T ss_pred HHHHHHHHHCCCCEEEEccccCCHHHHHHc---CCCCCH---HHHHHHHHHHHHcCCCeEEEEe-ecCCCC---------
Confidence 6789999999999666665 221 111111 11 122 34567888999999974 3443 345663
Q ss_pred CCchhHHHHHHHHHHHHHHhCCccceEEeeccchhh
Q 036046 199 LNRSFVDDFKDYAEICFKSFGDRVKNWMTINEPLIA 234 (538)
Q Consensus 199 ~~~~~~~~f~~ya~~~~~~fgd~V~~W~t~NEp~~~ 234 (538)
++.+.|.+=.+.+.+-=-+.|......-||++.
T Consensus 167 ---qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~ 199 (370)
T PRK06294 167 ---QSLSDFIVDLHQAITLPITHISLYNLTIDPHTS 199 (370)
T ss_pred ---CCHHHHHHHHHHHHccCCCeEEEeeeEecCCCh
Confidence 356667777777665434678888888888854
No 126
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=33.07 E-value=2.4e+02 Score=28.58 Aligned_cols=68 Identities=13% Similarity=0.064 Sum_probs=48.0
Q ss_pred hHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCCCCc
Q 036046 122 YKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGPLNR 201 (538)
Q Consensus 122 y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw~~~ 201 (538)
-++|+++..+.|++.+|+++..+. ++--.+.++.++++|+++.+++.--+- .+
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~---------------~~~~~~~i~~ak~~G~~v~~~i~~~~~------------~~ 145 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND---------------VRNLEVAIKAVKKAGKHVEGAICYTGS------------PV 145 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh---------------HHHHHHHHHHHHHCCCeEEEEEEecCC------------CC
Confidence 488999999999999999875432 355788899999999998876632111 12
Q ss_pred hhHHHHHHHHHHHHH
Q 036046 202 SFVDDFKDYAEICFK 216 (538)
Q Consensus 202 ~~~~~f~~ya~~~~~ 216 (538)
...+.+.++++.+.+
T Consensus 146 ~~~~~~~~~~~~~~~ 160 (275)
T cd07937 146 HTLEYYVKLAKELED 160 (275)
T ss_pred CCHHHHHHHHHHHHH
Confidence 234556666666654
No 127
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=32.90 E-value=3e+02 Score=29.60 Aligned_cols=89 Identities=20% Similarity=0.242 Sum_probs=57.9
Q ss_pred ccchhhhchHHHHHHHHHh-CCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEE-EEecCCCCchHH
Q 036046 114 TAIDSYRRYKEDMKAVKEL-GVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPF-VTIFHFDSPQGL 191 (538)
Q Consensus 114 ~a~d~Y~~y~eDi~lm~~l-G~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~-vtL~H~~~P~~l 191 (538)
.+.+-.++ .+|++.+..+ ++. .++++ ..|.+ ...| +.++.+.+.++||+.. ++.-.|..|.+
T Consensus 35 ~~r~~~e~-~~d~~~v~~L~~~~-~~v~l----H~~~d---~~~d------~~~~~~~l~~~GL~v~~i~p~~f~~~~~- 98 (378)
T TIGR02635 35 AARNVFEK-IEDAALVHRLTGIC-PTVAL----HIPWD---RVED------YEELARYAEELGLKIGAINPNLFQDDDY- 98 (378)
T ss_pred CCCCHHHH-HHHHHHHHhhcCCC-Cceee----ccCCc---cccC------HHHHHHHHHHcCCceeeeeCCccCCccc-
Confidence 34444443 7788888888 555 66666 23323 1223 6788888999999977 77776766654
Q ss_pred HHhhCCCCCc--hhHHHHHHHHHHHH---HHhCC
Q 036046 192 QEKYGGPLNR--SFVDDFKDYAEICF---KSFGD 220 (538)
Q Consensus 192 ~~~~ggw~~~--~~~~~f~~ya~~~~---~~fgd 220 (538)
++|.+.|+ ++++.-.++.+.|. +.+|-
T Consensus 99 --~~GSLt~pD~~vR~~AIe~~k~~idiA~eLGa 130 (378)
T TIGR02635 99 --KFGSLTHPDKRIRRKAIDHLLECVDIAKKTGS 130 (378)
T ss_pred --CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34788875 56666666666655 66775
No 128
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=32.66 E-value=1.2e+02 Score=36.00 Aligned_cols=60 Identities=25% Similarity=0.292 Sum_probs=44.0
Q ss_pred hhchHHHHHHHHHhCCCEEEeccccc---------------ccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEe-
Q 036046 119 YRRYKEDMKAVKELGVDSYRFSISWT---------------RILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTI- 182 (538)
Q Consensus 119 Y~~y~eDi~lm~~lG~~~~Rfsi~Ws---------------ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL- 182 (538)
+....+-+.-+++||++++=+|=-+. +|.|.- | +.+=++++++++.++||.+|+.+
T Consensus 15 f~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~l---G-----t~edf~~Lv~aah~~Gm~vIlDiV 86 (825)
T TIGR02401 15 FDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPEL---G-----GEEGLRRLSEAARARGLGLIVDIV 86 (825)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCC---C-----CHHHHHHHHHHHHHCCCEEEEEec
Confidence 44578889999999999997765443 333332 2 34558999999999999999986
Q ss_pred -cCCC
Q 036046 183 -FHFD 186 (538)
Q Consensus 183 -~H~~ 186 (538)
.|-.
T Consensus 87 pNH~a 91 (825)
T TIGR02401 87 PNHMA 91 (825)
T ss_pred ccccc
Confidence 3643
No 129
>PRK07094 biotin synthase; Provisional
Probab=31.48 E-value=81 Score=32.57 Aligned_cols=56 Identities=21% Similarity=0.234 Sum_probs=39.7
Q ss_pred chHHHHHHHHHhCCCEEEeccc-c-cccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEE
Q 036046 121 RYKEDMKAVKELGVDSYRFSIS-W-TRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVT 181 (538)
Q Consensus 121 ~y~eDi~lm~~lG~~~~Rfsi~-W-sri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vt 181 (538)
.-+|+++.|+++|++.+-++++ - .++...-. ...+. +-+.+.++.+++.||.+..+
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~--~~~s~---~~~~~~i~~l~~~Gi~v~~~ 184 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKLH--PGMSF---ENRIACLKDLKELGYEVGSG 184 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhC--CCCCH---HHHHHHHHHHHHcCCeecce
Confidence 3478999999999999999883 3 34444321 12233 56888999999999975443
No 130
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=31.17 E-value=3.3e+02 Score=28.16 Aligned_cols=111 Identities=17% Similarity=0.081 Sum_probs=60.7
Q ss_pred hHHHHHHHHHhCCCEEEe--cccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCC---chHHHHh--
Q 036046 122 YKEDMKAVKELGVDSYRF--SISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDS---PQGLQEK-- 194 (538)
Q Consensus 122 y~eDi~lm~~lG~~~~Rf--si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~---P~~l~~~-- 194 (538)
..+-++.+++.|+..==+ .+.|..........=.+|.+-.---++||++|+++|++.++.+.-+-. |..-+-+
T Consensus 31 v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~ 110 (317)
T cd06599 31 LLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEA 110 (317)
T ss_pred HHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHC
Confidence 455566666666643333 334433211000001122222122479999999999998887654322 2211100
Q ss_pred -----------------------hCCCCCchhHHHHHHHHHHHHHHhCCccceEEeeccchh
Q 036046 195 -----------------------YGGPLNRSFVDDFKDYAEICFKSFGDRVKNWMTINEPLI 233 (538)
Q Consensus 195 -----------------------~ggw~~~~~~~~f~~ya~~~~~~fgd~V~~W~t~NEp~~ 233 (538)
+-.+.||+.++.|.+..+..+...|- .-+|+=+|||.+
T Consensus 111 g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gv-dg~w~D~~E~~~ 171 (317)
T cd06599 111 GAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGI-DSTWNDNNEYEI 171 (317)
T ss_pred CcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCC-cEEEecCCCCcc
Confidence 01257899999998877666655542 346777999964
No 131
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=30.62 E-value=1.9e+02 Score=29.37 Aligned_cols=72 Identities=18% Similarity=0.211 Sum_probs=51.4
Q ss_pred chhhhchHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHH
Q 036046 116 IDSYRRYKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQ 192 (538)
Q Consensus 116 ~d~Y~~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~ 192 (538)
.+..+...+-.+.+|++|+..+|-+..=+|=-|.+. .| +-. +.+..+-+.+.+.||..+.+.++-..+..+.
T Consensus 37 ie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~-~G-~g~---~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~ 108 (266)
T PRK13398 37 VESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSF-QG-LGE---EGLKILKEVGDKYNLPVVTEVMDTRDVEEVA 108 (266)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCcc-CC-cHH---HHHHHHHHHHHHcCCCEEEeeCChhhHHHHH
Confidence 455677788889999999999999985566666542 23 224 5566677778999999888887655555544
No 132
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=30.32 E-value=2.3e+02 Score=31.82 Aligned_cols=107 Identities=18% Similarity=0.166 Sum_probs=68.3
Q ss_pred HHHHHHHHHhCCCEEEecc--cccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCCCC
Q 036046 123 KEDMKAVKELGVDSYRFSI--SWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGPLN 200 (538)
Q Consensus 123 ~eDi~lm~~lG~~~~Rfsi--~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw~~ 200 (538)
++.+++|+++|++.+-+++ --.+++-.-. +| .+. +-..+.++.+++.|++..+.| =+++|.
T Consensus 206 ~e~L~~L~~~G~~rVslGVQS~~d~VL~~in-Rg-ht~---~~v~~Ai~~lr~~G~~v~~~L-M~GLPg----------- 268 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQTIYNDILERTK-RG-HTV---RDVVEATRLLRDAGLKVVYHI-MPGLPG----------- 268 (522)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHhC-CC-CCH---HHHHHHHHHHHHcCCeEEEEe-ecCCCC-----------
Confidence 6889999999999888877 2223332210 12 222 445678888999999755544 345663
Q ss_pred chhHHHHHHHHHHHHH--HhC-CccceEEeeccchhhhhcccccCcCCCC
Q 036046 201 RSFVDDFKDYAEICFK--SFG-DRVKNWMTINEPLIASKYGYESGTAAPG 247 (538)
Q Consensus 201 ~~~~~~f~~ya~~~~~--~fg-d~V~~W~t~NEp~~~~~~gy~~G~~pPg 247 (538)
++.+.+.+=++.+++ .++ |.|+.+.+.=+|++....-|..|.|.|.
T Consensus 269 -qt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~ 317 (522)
T TIGR01211 269 -SSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPY 317 (522)
T ss_pred -CCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCC
Confidence 234555666666665 354 6788888777777655555677777664
No 133
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=29.91 E-value=1.1e+02 Score=32.27 Aligned_cols=58 Identities=19% Similarity=0.384 Sum_probs=43.6
Q ss_pred HHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHH
Q 036046 123 KEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQE 193 (538)
Q Consensus 123 ~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~ 193 (538)
..-|++|.+.|++-.=.|+ +.|++ -+...+..+.++++++.+.|+++||.. -|+-|.+
T Consensus 19 ~~Yi~~~~~~Gf~~IFtsl----~~~~~-----~~~~~~~~~~ell~~Anklg~~vivDv----nPsil~~ 76 (360)
T COG3589 19 IAYIDRMHKYGFKRIFTSL----LIPEE-----DAELYFHRFKELLKEANKLGLRVIVDV----NPSILKE 76 (360)
T ss_pred HHHHHHHHHcCccceeeec----ccCCc-----hHHHHHHHHHHHHHHHHhcCcEEEEEc----CHHHHhh
Confidence 3447889999987655554 33444 234578899999999999999999987 6887765
No 134
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=29.31 E-value=2.7e+02 Score=25.60 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=38.1
Q ss_pred hHHHHHHHHHhCCCEEEeccc-ccccccCCCCCCCCChhHHHHHHHHHHHHHHcC-CEEEEEe
Q 036046 122 YKEDMKAVKELGVDSYRFSIS-WTRILPNGSLSGGVNQMGIDHYNSLIDELIKYG-IKPFVTI 182 (538)
Q Consensus 122 y~eDi~lm~~lG~~~~Rfsi~-Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~g-I~p~vtL 182 (538)
=++.++.|+++|++.+.+|+. ++.-.-+.. ....+. +.+.+.|+.++++| +.+.+.+
T Consensus 99 ~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~-~~~~~~---~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 99 TEELLEALKEAGVNRVSLGVQSGSDEVLKAI-NRGHTV---EDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred CHHHHHHHHHcCCCeEEEecccCCHHHHHHh-cCCCCH---HHHHHHHHHHHHhCCcceEEeE
Confidence 378899999999999999994 543211100 011233 67889999999999 6544433
No 135
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=28.79 E-value=1.8e+02 Score=34.29 Aligned_cols=99 Identities=23% Similarity=0.235 Sum_probs=60.6
Q ss_pred CCCEEEeccc-ccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecC---CCCchHHH--Hh------------
Q 036046 133 GVDSYRFSIS-WTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFH---FDSPQGLQ--EK------------ 194 (538)
Q Consensus 133 G~~~~Rfsi~-Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H---~~~P~~l~--~~------------ 194 (538)
=++++++.+. |.+ .-+ .=++|..-.---+.||+.|++.||+-++-+.. -|.|+.=+ ++
T Consensus 295 P~d~~~lD~~~~~~--~~~--~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~ 370 (772)
T COG1501 295 PLDVFVLDIDFWMD--NWG--DFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIY 370 (772)
T ss_pred cceEEEEeehhhhc--ccc--ceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEe
Confidence 3568899995 876 111 01233222222359999999999998887753 34443221 11
Q ss_pred ----------hCCCCCchhHHHHHHHHHHHHHHhCCccceEEeeccchhhhh
Q 036046 195 ----------YGGPLNRSFVDDFKDYAEICFKSFGDRVKNWMTINEPLIASK 236 (538)
Q Consensus 195 ----------~ggw~~~~~~~~f~~ya~~~~~~fgd~V~~W~t~NEp~~~~~ 236 (538)
+-.+.||+.++++.+....-+..+| -.-+|.=+|||.+...
T Consensus 371 ~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~G-v~g~W~D~nEp~~~~~ 421 (772)
T COG1501 371 QADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLG-VDGFWNDMNEPEPFDG 421 (772)
T ss_pred eecccCCcccccCCCCHHHHHHHHHHHHhHHHhcC-ccEEEccCCCCccccc
Confidence 1137899999999973333333343 2568889999987643
No 136
>COG5510 Predicted small secreted protein [Function unknown]
Probab=28.67 E-value=38 Score=24.68 Aligned_cols=21 Identities=19% Similarity=0.399 Sum_probs=15.4
Q ss_pred hHHHHHHHHHhhhhccccccc
Q 036046 22 FASTVYVLLLSCSFSAQCHEF 42 (538)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~ 42 (538)
++.++.++++.+.+.+.||..
T Consensus 5 t~l~i~~vll~s~llaaCNT~ 25 (44)
T COG5510 5 TILLIALVLLASTLLAACNTM 25 (44)
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 355566777788888999854
No 137
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=28.60 E-value=2.7e+02 Score=31.53 Aligned_cols=57 Identities=23% Similarity=0.378 Sum_probs=48.6
Q ss_pred HHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCE-EEEEecCCCCchHHHH
Q 036046 123 KEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIK-PFVTIFHFDSPQGLQE 193 (538)
Q Consensus 123 ~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~-p~vtL~H~~~P~~l~~ 193 (538)
-++|..+.++|...+|+.+ .+.+..+-..++.+.|++.|+. |+|.=.||+.-..+..
T Consensus 48 v~Qi~~L~~aGceiVRvtv--------------p~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~A~~a 105 (606)
T PRK00694 48 VRQICALQEWGCDIVRVTV--------------QGLKEAQACEHIKERLIQQGISIPLVADIHFFPQAAMHV 105 (606)
T ss_pred HHHHHHHHHcCCCEEEEcC--------------CCHHHHHhHHHHHHHHhccCCCCCEEeecCCChHHHHHH
Confidence 5778999999999999964 4566677889999999999997 8999999999887663
No 138
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=28.23 E-value=2.3e+02 Score=32.26 Aligned_cols=93 Identities=18% Similarity=0.120 Sum_probs=60.0
Q ss_pred hHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCc----hHHHHh---
Q 036046 122 YKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSP----QGLQEK--- 194 (538)
Q Consensus 122 y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P----~~l~~~--- 194 (538)
.++|++++.+.|++.+|+..+.+.+ +-....++.++++|+.+.+++.+-+.| ..+.+.
T Consensus 93 v~~~v~~a~~~Gvd~irif~~lnd~---------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~ 157 (582)
T TIGR01108 93 VERFVKKAVENGMDVFRIFDALNDP---------------RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEE 157 (582)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcH---------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHH
Confidence 4566899999999999999765432 225677788888999888887665555 222111
Q ss_pred -------------hCCCCCchhHHHHHHHHHHHHHHhCCccceEEeeccchh
Q 036046 195 -------------YGGPLNRSFVDDFKDYAEICFKSFGDRVKNWMTINEPLI 233 (538)
Q Consensus 195 -------------~ggw~~~~~~~~f~~ya~~~~~~fgd~V~~W~t~NEp~~ 233 (538)
-.|...|.- ..+..+.+-++++ ..-...+-|-..+
T Consensus 158 ~~~~Gad~I~i~Dt~G~~~P~~---v~~lv~~lk~~~~-~pi~~H~Hnt~Gl 205 (582)
T TIGR01108 158 LLEMGVDSICIKDMAGILTPKA---AYELVSALKKRFG-LPVHLHSHATTGM 205 (582)
T ss_pred HHHcCCCEEEECCCCCCcCHHH---HHHHHHHHHHhCC-CceEEEecCCCCc
Confidence 135666544 3444555556665 3346677777654
No 139
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=28.19 E-value=1.9e+02 Score=29.54 Aligned_cols=60 Identities=27% Similarity=0.393 Sum_probs=47.4
Q ss_pred hHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEe
Q 036046 122 YKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTI 182 (538)
Q Consensus 122 y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 182 (538)
-++|++...++|++..-+.++=|...-.... +.=-.+.++.+.++++..+++|+++-+++
T Consensus 76 ~~~die~A~~~g~~~v~i~~s~S~~~~~~~~-~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 76 NKEDLKLVKEMGLKETGILMSVSDYHIFKKL-KMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHh-CcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3799999999999999988866555443211 33345688999999999999999999988
No 140
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=28.14 E-value=40 Score=26.45 Aligned_cols=38 Identities=18% Similarity=0.381 Sum_probs=31.1
Q ss_pred cccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCC
Q 036046 144 TRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHF 185 (538)
Q Consensus 144 sri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~ 185 (538)
+++-|+. +.=-.++++...+++..|.++|| +.+.|++-
T Consensus 19 s~l~p~~---~~d~~kaldiCaeIL~cLE~R~i-sWl~LFql 56 (64)
T PF03511_consen 19 SYLAPKE---GADSLKALDICAEILGCLEKRKI-SWLVLFQL 56 (64)
T ss_pred HhcCccc---ccccHHHHHHHHHHHHHHHhCCC-cHHHhhhc
Confidence 5778887 55678899999999999999999 67766653
No 141
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=28.02 E-value=2.3e+02 Score=33.33 Aligned_cols=107 Identities=21% Similarity=0.305 Sum_probs=68.8
Q ss_pred hHHHHHHHHHhCCC--EEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEec---CCCCc--------
Q 036046 122 YKEDMKAVKELGVD--SYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIF---HFDSP-------- 188 (538)
Q Consensus 122 y~eDi~lm~~lG~~--~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~---H~~~P-------- 188 (538)
.++-++.++++|+. ..=..|.|-.=..+ =.+|..+-.....+++.|.++|++-++.+. +-+..
T Consensus 313 ~~dvv~~~~~agiPld~~~~DiDyMd~ykD----FTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~ 388 (805)
T KOG1065|consen 313 VRDVVENYRAAGIPLDVIVIDIDYMDGYKD----FTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGV 388 (805)
T ss_pred HHHHHHHHHHcCCCcceeeeehhhhhcccc----eeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhh
Confidence 34557888888887 55555555322222 245655555678999999999999998886 22222
Q ss_pred -------------hHHHHhhCC------CCCchhHHHHHHHHHHHHHHhCCccc---eEEeeccchhhhh
Q 036046 189 -------------QGLQEKYGG------PLNRSFVDDFKDYAEICFKSFGDRVK---NWMTINEPLIASK 236 (538)
Q Consensus 189 -------------~~l~~~~gg------w~~~~~~~~f~~ya~~~~~~fgd~V~---~W~t~NEp~~~~~ 236 (538)
..+-+-..| ++|+.+++++.+ .+++|.+.|. +|+-+|||..++.
T Consensus 389 ~~~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~----~~~~fh~~vp~dg~wiDmnE~snf~~ 454 (805)
T KOG1065|consen 389 AKDVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLD----ELKRFHDEVPFDGFWIDMNEPSNFPS 454 (805)
T ss_pred hhceeeecccCchhhhcccCCCcccccccCCchHHHHHHH----HHHhhcccCCccceEEECCCcccCCC
Confidence 111111123 777877666654 5668888765 8999999986653
No 142
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=27.97 E-value=2.7e+02 Score=29.24 Aligned_cols=91 Identities=16% Similarity=0.250 Sum_probs=63.1
Q ss_pred HHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCCCCchhH
Q 036046 125 DMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGPLNRSFV 204 (538)
Q Consensus 125 Di~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw~~~~~~ 204 (538)
+.+.+|++|.++..|=+=|. |++ +..+|..-.++.+++.++|.+++|-=++=+..+|.+.. +. ++ .++.
T Consensus 111 s~~rike~GadavK~Llyy~---pD~--~~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~~~--~~-~~---~~ya 179 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYD---VDD--AEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNIP--DN-GS---VEFA 179 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeC---CCC--ChHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCCC--CC-Cc---HHHH
Confidence 36889999999999988774 443 24588888899999999999999998888888876541 11 11 2222
Q ss_pred HHHHHHHHHHHHHhCC---ccceEE
Q 036046 205 DDFKDYAEICFKSFGD---RVKNWM 226 (538)
Q Consensus 205 ~~f~~ya~~~~~~fgd---~V~~W~ 226 (538)
+.--+.+-..++.|++ .|+.|=
T Consensus 180 k~kP~~V~~a~kefs~~~~gvDVlK 204 (325)
T TIGR01232 180 KVKPRKVNEAMKLFSEPRFNVDVLK 204 (325)
T ss_pred HhChHHHHHHHHHhccCCCCCcEEE
Confidence 2223344455666665 355554
No 143
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=27.88 E-value=1.4e+02 Score=31.61 Aligned_cols=87 Identities=18% Similarity=0.301 Sum_probs=58.2
Q ss_pred CcccchhhhchHHHHHHHHHhCCCEEEecccccccccCCCCCCCC------ChhH-HHHHHHHHHHHHHcCCEEEEEecC
Q 036046 112 LITAIDSYRRYKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGV------NQMG-IDHYNSLIDELIKYGIKPFVTIFH 184 (538)
Q Consensus 112 ~~~a~d~Y~~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~------n~~g-l~~y~~~i~~l~~~gI~p~vtL~H 184 (538)
+-+|.=||+ |+-=++-++. ++.+|+. + |++ .... -+....+++.++++||-.=+...|
T Consensus 76 PlVADIHFd-~~lAl~a~~~--v~kiRIN---------P---GNi~~~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~ 140 (359)
T PF04551_consen 76 PLVADIHFD-YRLALEAIEA--VDKIRIN---------P---GNIVDEFQEELGSIREKVKEVVEAAKERGIPIRIGVNS 140 (359)
T ss_dssp -EEEEESTT-CHHHHHHHHC---SEEEE----------T---TTSS----SS-SS-HHHHHHHHHHHHHHT-EEEEEEEG
T ss_pred CeeeecCCC-HHHHHHHHHH--hCeEEEC---------C---CcccccccccccchHHHHHHHHHHHHHCCCCEEEeccc
Confidence 344555776 5555555555 8888874 3 555 0011 267899999999999999999999
Q ss_pred CCCchHHHHhhCCCCCchhHHHHHHHHHHH
Q 036046 185 FDSPQGLQEKYGGPLNRSFVDDFKDYAEIC 214 (538)
Q Consensus 185 ~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~ 214 (538)
-.++.-+.++| |-.....++--.++++.|
T Consensus 141 GSL~~~~~~ky-~~t~~amvesA~~~~~~l 169 (359)
T PF04551_consen 141 GSLEKDILEKY-GPTPEAMVESALEHVRIL 169 (359)
T ss_dssp GGS-HHHHHHH-CHHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHhhc-cchHHHHHHHHHHHHHHH
Confidence 99999999998 444455666666666644
No 144
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=27.09 E-value=1.5e+02 Score=29.85 Aligned_cols=44 Identities=18% Similarity=0.272 Sum_probs=34.0
Q ss_pred hhhhchHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHH
Q 036046 117 DSYRRYKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDEL 171 (538)
Q Consensus 117 d~Y~~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l 171 (538)
+-....++||++++++|++.+=|++-= | +|.+|.+ ...++++..
T Consensus 70 ~E~~~M~~di~~~~~~GadGvV~G~L~----~----dg~vD~~---~~~~Li~~a 113 (248)
T PRK11572 70 GEFAAMLEDIATVRELGFPGLVTGVLD----V----DGHVDMP---RMRKIMAAA 113 (248)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeeEC----C----CCCcCHH---HHHHHHHHh
Confidence 456778999999999999999999841 2 3789994 456666666
No 145
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=26.91 E-value=2.4e+02 Score=29.96 Aligned_cols=64 Identities=19% Similarity=0.393 Sum_probs=46.5
Q ss_pred hhhhchHHHHHHHHHhCCC-------EEE-------ecccccccccCCCCCCCCC-hhHHHHHHHHHHHHHHcCCEEEEE
Q 036046 117 DSYRRYKEDMKAVKELGVD-------SYR-------FSISWTRILPNGSLSGGVN-QMGIDHYNSLIDELIKYGIKPFVT 181 (538)
Q Consensus 117 d~Y~~y~eDi~lm~~lG~~-------~~R-------fsi~Wsri~P~~~~~g~~n-~~gl~~y~~~i~~l~~~gI~p~vt 181 (538)
.....-.|-.+.+|+++-+ ..| .+..|.-+.-++..+|.+| .+||...++++-++.+.|+. ++|
T Consensus 65 ~d~~~aleyA~~Lk~l~~~~~d~l~ivmR~y~eKPRT~~gwkGli~DP~ldgs~~i~~GL~~~R~ll~~~~e~Glp-~at 143 (353)
T PRK12755 65 HDPEAALEYARRLKALADELSDRLLIVMRVYFEKPRTTVGWKGLINDPHLDGSFDIEEGLRIARKLLLDLVELGLP-LAT 143 (353)
T ss_pred CCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCcCCcCCCCCccccccccHHHHHHHHHHHHHHHHHhCCC-EEE
Confidence 3344445555666666544 555 7788999876666678888 88999999999999999984 554
No 146
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=26.89 E-value=1.7e+02 Score=30.07 Aligned_cols=66 Identities=17% Similarity=0.337 Sum_probs=46.8
Q ss_pred hchHHHHHHHHHhCCCEEEeccc----ccc---cccCC----------CCCCCCChhHHHHHHHHHHHHHHcCCEEEEEe
Q 036046 120 RRYKEDMKAVKELGVDSYRFSIS----WTR---ILPNG----------SLSGGVNQMGIDHYNSLIDELIKYGIKPFVTI 182 (538)
Q Consensus 120 ~~y~eDi~lm~~lG~~~~Rfsi~----Wsr---i~P~~----------~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 182 (538)
...++-|++|+..++|.+.+-++ |.- ..|+- ..+|.+.. +=++++++.++++||+.|--+
T Consensus 16 ~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~---~di~elv~yA~~rgI~viPEi 92 (303)
T cd02742 16 ESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTY---AQLKDIIEYAAARGIEVIPEI 92 (303)
T ss_pred HHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECH---HHHHHHHHHHHHcCCEEEEec
Confidence 34678899999999999988876 622 12321 01245666 457999999999999977766
Q ss_pred cCCCCchHH
Q 036046 183 FHFDSPQGL 191 (538)
Q Consensus 183 ~H~~~P~~l 191 (538)
|+|.-.
T Consensus 93 ---D~PGH~ 98 (303)
T cd02742 93 ---DMPGHS 98 (303)
T ss_pred ---cchHHH
Confidence 677544
No 147
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=26.61 E-value=2.4e+02 Score=30.87 Aligned_cols=77 Identities=13% Similarity=0.223 Sum_probs=46.8
Q ss_pred hHHHHHHHHHhCCCEEEecc-ccc-ccccCCCCCCCCChhHHHHHHHHHHHHHHcCCE-EEEEecCCCCchHHHHhhCCC
Q 036046 122 YKEDMKAVKELGVDSYRFSI-SWT-RILPNGSLSGGVNQMGIDHYNSLIDELIKYGIK-PFVTIFHFDSPQGLQEKYGGP 198 (538)
Q Consensus 122 y~eDi~lm~~lG~~~~Rfsi-~Ws-ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~-p~vtL~H~~~P~~l~~~~ggw 198 (538)
=+|.+++|+++|++.+.+++ +=+ .+.-.- ...-+. +-..+.++.+++.||. +.+.| -+++|.
T Consensus 150 t~e~l~~l~~aG~~risiGvqS~~~~~L~~l--~r~~~~---~~~~~ai~~l~~~G~~~v~~dl-i~GlPg--------- 214 (453)
T PRK09249 150 DLEMLDALRELGFNRLSLGVQDFDPEVQKAV--NRIQPF---EFTFALVEAARELGFTSINIDL-IYGLPK--------- 214 (453)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCHHHHHHh--CCCCCH---HHHHHHHHHHHHcCCCcEEEEE-EccCCC---------
Confidence 37889999999999777777 322 122111 012233 4567889999999994 43433 445553
Q ss_pred CCchhHHHHHHHHHHHHH
Q 036046 199 LNRSFVDDFKDYAEICFK 216 (538)
Q Consensus 199 ~~~~~~~~f~~ya~~~~~ 216 (538)
++.+.|.+-.+.+.+
T Consensus 215 ---qt~e~~~~~l~~~~~ 229 (453)
T PRK09249 215 ---QTPESFARTLEKVLE 229 (453)
T ss_pred ---CCHHHHHHHHHHHHh
Confidence 344556555555554
No 148
>PRK03705 glycogen debranching enzyme; Provisional
Probab=26.51 E-value=1.5e+02 Score=34.35 Aligned_cols=55 Identities=18% Similarity=0.395 Sum_probs=37.1
Q ss_pred HHHHHHhCCCEEEeccc-----------------c-------cccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEE
Q 036046 126 MKAVKELGVDSYRFSIS-----------------W-------TRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVT 181 (538)
Q Consensus 126 i~lm~~lG~~~~Rfsi~-----------------W-------sri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vt 181 (538)
|+-+|+||++++-++=- | -.+.|.- |.-....++=+++||++|.++||++|+.
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~y---gt~~~~~~~efk~LV~~~H~~GI~VIlD 261 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAY---ASGPETALDEFRDAVKALHKAGIEVILD 261 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccccc---CCCCcchHHHHHHHHHHHHHCCCEEEEE
Confidence 88999999999876421 1 1222221 2111123556899999999999999998
Q ss_pred ec
Q 036046 182 IF 183 (538)
Q Consensus 182 L~ 183 (538)
+.
T Consensus 262 vV 263 (658)
T PRK03705 262 VV 263 (658)
T ss_pred Ec
Confidence 63
No 149
>PRK10785 maltodextrin glucosidase; Provisional
Probab=26.50 E-value=1.2e+02 Score=34.51 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=40.3
Q ss_pred hchHHHHHHHHHhCCCEEEeccc-------------ccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEec
Q 036046 120 RRYKEDMKAVKELGVDSYRFSIS-------------WTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIF 183 (538)
Q Consensus 120 ~~y~eDi~lm~~lG~~~~Rfsi~-------------Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~ 183 (538)
.-..+-+.-+++|||++.=++=- +-+|-|.- | ..+=+++||+++.++||++|+.+-
T Consensus 179 ~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~---G-----t~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 179 DGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQL---G-----GDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCccc---C-----CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 44567789999999999887642 22232321 2 224589999999999999999863
No 150
>PLN02960 alpha-amylase
Probab=26.22 E-value=1.3e+02 Score=35.78 Aligned_cols=95 Identities=13% Similarity=0.170 Sum_probs=60.6
Q ss_pred hhhhchHHH-HHHHHHhCCCEEEeccc--------cc-------ccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEE
Q 036046 117 DSYRRYKED-MKAVKELGVDSYRFSIS--------WT-------RILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFV 180 (538)
Q Consensus 117 d~Y~~y~eD-i~lm~~lG~~~~Rfsi~--------Ws-------ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~v 180 (538)
..|.-..+. |.-+|+||++++-+.=- |. .+.|.- |. .+=++.+|++|.++||.+|+
T Consensus 413 gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~y---Gt-----p~dfk~LVd~aH~~GI~VIL 484 (897)
T PLN02960 413 SSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRF---GT-----PDDFKRLVDEAHGLGLLVFL 484 (897)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCccccc---CC-----HHHHHHHHHHHHHCCCEEEE
Confidence 356666554 89999999999886521 21 111111 22 23479999999999999999
Q ss_pred Eec--CCCC--ch-----------HHHH--h--hCCC-------CCchhHHHHHHHHHHHHHHhC
Q 036046 181 TIF--HFDS--PQ-----------GLQE--K--YGGP-------LNRSFVDDFKDYAEICFKSFG 219 (538)
Q Consensus 181 tL~--H~~~--P~-----------~l~~--~--~ggw-------~~~~~~~~f~~ya~~~~~~fg 219 (538)
.+. |+.. +. ++.. . +..| .++++++.+.+=|..-+++|+
T Consensus 485 DvV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 485 DIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred EecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 874 4321 11 1110 0 0112 347888889999999999885
No 151
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=26.18 E-value=1.8e+02 Score=28.72 Aligned_cols=55 Identities=15% Similarity=0.235 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCCCCchhHHHHHHHHHHHHHHhC
Q 036046 161 IDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGPLNRSFVDDFKDYAEICFKSFG 219 (538)
Q Consensus 161 l~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fg 219 (538)
++...+.|..|+++|+++++++.-+.....+ ....+++.++.|++-+..++++||
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 4567889999999999999999765544222 112445556666666666666665
No 152
>PRK06256 biotin synthase; Validated
Probab=25.99 E-value=1.1e+02 Score=31.80 Aligned_cols=56 Identities=21% Similarity=0.280 Sum_probs=39.2
Q ss_pred chHHHHHHHHHhCCCEEEecc-cccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEE
Q 036046 121 RYKEDMKAVKELGVDSYRFSI-SWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVT 181 (538)
Q Consensus 121 ~y~eDi~lm~~lG~~~~Rfsi-~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vt 181 (538)
.-+|.++.|+++|++.+-+++ +=.++++.-. ..-+. +-+.+.|+.+++.||++..+
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~--~~~t~---~~~i~~i~~a~~~Gi~v~~~ 206 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLETSRSYFPNVV--TTHTY---EDRIDTCEMVKAAGIEPCSG 206 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCccCHHHHhhcC--CCCCH---HHHHHHHHHHHHcCCeeccC
Confidence 447889999999999999887 4233444421 11233 55778999999999985544
No 153
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=25.68 E-value=1.8e+02 Score=37.30 Aligned_cols=67 Identities=19% Similarity=0.298 Sum_probs=48.9
Q ss_pred hhhchHHHHHHHHHhCCCEEEeccccc---------------ccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEe
Q 036046 118 SYRRYKEDMKAVKELGVDSYRFSISWT---------------RILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTI 182 (538)
Q Consensus 118 ~Y~~y~eDi~lm~~lG~~~~Rfsi~Ws---------------ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 182 (538)
.+....+-+.-+++||++++=+|=-+. +|.|.- | +.+=+++++++|.++||.+|+.+
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~l---G-----~~edf~~Lv~~ah~~Gi~vilDi 827 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEI---G-----GEEGFERFCAALKAHGLGQLLDI 827 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCccc---C-----CHHHHHHHHHHHHHCCCEEEEEe
Confidence 355678889999999999997765443 333332 2 34558999999999999999986
Q ss_pred --cCCC-----CchHHH
Q 036046 183 --FHFD-----SPQGLQ 192 (538)
Q Consensus 183 --~H~~-----~P~~l~ 192 (538)
.|.. .|.|..
T Consensus 828 V~NH~~~~~~~n~w~~d 844 (1693)
T PRK14507 828 VPNHMGVGGADNPWWLD 844 (1693)
T ss_pred cccccCCCccCCHHHHH
Confidence 3653 566654
No 154
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=25.38 E-value=5e+02 Score=25.82 Aligned_cols=53 Identities=15% Similarity=0.178 Sum_probs=35.2
Q ss_pred chHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEE
Q 036046 121 RYKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPF 179 (538)
Q Consensus 121 ~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~ 179 (538)
.+++-+++++++|++.+=+++.=....+.. ..++. ...+.+-+.+.++||+..
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~---~~~~~---~~~~~l~~~l~~~gl~i~ 74 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVDESDERLAR---LDWSR---EQRLALVNALVETGFRVN 74 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecCccccchhc---cCCCH---HHHHHHHHHHHHcCCcee
Confidence 378999999999999988864211111111 11233 446778888889999864
No 155
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=24.56 E-value=89 Score=38.80 Aligned_cols=65 Identities=17% Similarity=0.295 Sum_probs=40.1
Q ss_pred hhhchH--HHHHHHHHhCCCEEEeccccccccc-----CCC-----CC----CCCCh--h--HHHHHHHHHHHHHHcCCE
Q 036046 118 SYRRYK--EDMKAVKELGVDSYRFSISWTRILP-----NGS-----LS----GGVNQ--M--GIDHYNSLIDELIKYGIK 177 (538)
Q Consensus 118 ~Y~~y~--eDi~lm~~lG~~~~Rfsi~Wsri~P-----~~~-----~~----g~~n~--~--gl~~y~~~i~~l~~~gI~ 177 (538)
-|.... +.|.-+|+||++++-+.=-.....- .+. .. -.+|. . .++=+++||++|.++||+
T Consensus 183 t~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~ 262 (1221)
T PRK14510 183 TFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIA 262 (1221)
T ss_pred HHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCE
Confidence 354544 6688999999999876542221100 000 00 00111 1 345589999999999999
Q ss_pred EEEEe
Q 036046 178 PFVTI 182 (538)
Q Consensus 178 p~vtL 182 (538)
+|+..
T Consensus 263 VILDv 267 (1221)
T PRK14510 263 VILDV 267 (1221)
T ss_pred EEEEE
Confidence 99985
No 156
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=24.50 E-value=3.8e+02 Score=28.56 Aligned_cols=58 Identities=21% Similarity=0.348 Sum_probs=46.9
Q ss_pred HHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCE-EEEEecCCCCchHHHHh
Q 036046 123 KEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIK-PFVTIFHFDSPQGLQEK 194 (538)
Q Consensus 123 ~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~-p~vtL~H~~~P~~l~~~ 194 (538)
-++|..+.++|.+.+|+++ .|.+..+-..++.+.|++.|.. |+|.=.|||.-..|...
T Consensus 34 v~QI~~L~~aGceivRvav--------------p~~~~a~al~~I~~~l~~~g~~iPlVADIHFd~~lAl~a~ 92 (359)
T PF04551_consen 34 VAQIKRLEEAGCEIVRVAV--------------PDMEAAEALKEIKKRLRALGSPIPLVADIHFDYRLALEAI 92 (359)
T ss_dssp HHHHHHHHHCT-SEEEEEE---------------SHHHHHHHHHHHHHHHCTT-SS-EEEEESTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEcC--------------CCHHHHHHHHHHHHhhccCCCCCCeeeecCCCHHHHHHHH
Confidence 5789999999999999976 4667778889999999999987 99999999998888753
No 157
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=24.34 E-value=2.2e+02 Score=28.57 Aligned_cols=81 Identities=16% Similarity=0.092 Sum_probs=52.6
Q ss_pred HHHHHHHHHhC----CCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCC
Q 036046 123 KEDMKAVKELG----VDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGP 198 (538)
Q Consensus 123 ~eDi~lm~~lG----~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw 198 (538)
.+|++++.+.| ++.+|+.++.|.+.-.... +.=-.+.++-..+.++.+++.|++..++..+ .+.
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~-~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~-----------~~~ 139 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKL-KKTREEVLERAVEAVEYAKSHGLDVEFSAED-----------ATR 139 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCeEEEeeec-----------CCC
Confidence 78999999999 9999998765544322210 2112345677889999999999987755422 222
Q ss_pred CCchhHHHHHHHHHHHHHHhC
Q 036046 199 LNRSFVDDFKDYAEICFKSFG 219 (538)
Q Consensus 199 ~~~~~~~~f~~ya~~~~~~fg 219 (538)
...+.+.+.++.+.+ +|
T Consensus 140 ---~~~~~~~~~~~~~~~-~G 156 (268)
T cd07940 140 ---TDLDFLIEVVEAAIE-AG 156 (268)
T ss_pred ---CCHHHHHHHHHHHHH-cC
Confidence 234556666666643 44
No 158
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=24.27 E-value=1.3e+02 Score=29.86 Aligned_cols=61 Identities=15% Similarity=0.094 Sum_probs=40.7
Q ss_pred hhhhchHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEE
Q 036046 117 DSYRRYKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFV 180 (538)
Q Consensus 117 d~Y~~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~v 180 (538)
....+++.-|++++.+|.+..++.-......+.. ...-...++.++++.+.+.++||+..+
T Consensus 87 ~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~---~~~~~~~~~~l~~l~~~a~~~gv~l~i 147 (275)
T PRK09856 87 ESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPP---NVIWGRLAENLSELCEYAENIGMDLIL 147 (275)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCH---HHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 4566788889999999999999864322111111 111134567788899999999997433
No 159
>cd06419 GH25_muramidase_2 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=23.97 E-value=1.8e+02 Score=27.84 Aligned_cols=25 Identities=4% Similarity=0.028 Sum_probs=15.9
Q ss_pred chhHHHHHHHHHHHHHHhCCccceE
Q 036046 201 RSFVDDFKDYAEICFKSFGDRVKNW 225 (538)
Q Consensus 201 ~~~~~~f~~ya~~~~~~fgd~V~~W 225 (538)
.+..+...+|++.+-++.|.++-.+
T Consensus 109 ~~~~~~~~~fl~~ve~~~g~~piIY 133 (190)
T cd06419 109 KKSTQKLGLLVQLLEQHYNQSVIIR 133 (190)
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 4555677777777777776654333
No 160
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=23.53 E-value=5.7e+02 Score=26.48 Aligned_cols=66 Identities=27% Similarity=0.316 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCEEEEEecCC---CCchHHHHh--------------h-----------CCCCCchhHHHHHHHHHHHHH
Q 036046 165 NSLIDELIKYGIKPFVTIFHF---DSPQGLQEK--------------Y-----------GGPLNRSFVDDFKDYAEICFK 216 (538)
Q Consensus 165 ~~~i~~l~~~gI~p~vtL~H~---~~P~~l~~~--------------~-----------ggw~~~~~~~~f~~ya~~~~~ 216 (538)
.+||+.|++.|+++++.+.-+ +.+..+.+. | -.+.||+.++.|.+-.+....
T Consensus 74 ~~mi~~Lh~~G~~~~~~i~P~v~~~~~~~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~ 153 (317)
T cd06594 74 DELIEELKARGIRVLTYINPYLADDGPLYYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEMLL 153 (317)
T ss_pred HHHHHHHHHCCCEEEEEecCceecCCchhHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHHhh
Confidence 689999999999988776533 333321211 0 126789999999888877655
Q ss_pred HhCCccc-eEEeeccch
Q 036046 217 SFGDRVK-NWMTINEPL 232 (538)
Q Consensus 217 ~fgd~V~-~W~t~NEp~ 232 (538)
..| |+ +|+=+||+.
T Consensus 154 ~~G--vdg~w~D~~E~~ 168 (317)
T cd06594 154 DLG--LSGWMADFGEYL 168 (317)
T ss_pred hcC--CcEEEecCCCCC
Confidence 554 55 457889964
No 161
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=23.46 E-value=3.1e+02 Score=28.55 Aligned_cols=66 Identities=14% Similarity=0.214 Sum_probs=47.1
Q ss_pred hchHHHHHHHHHhCCCEEEecc----cccc---cccCCCC----CCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCc
Q 036046 120 RRYKEDMKAVKELGVDSYRFSI----SWTR---ILPNGSL----SGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSP 188 (538)
Q Consensus 120 ~~y~eDi~lm~~lG~~~~Rfsi----~Wsr---i~P~~~~----~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P 188 (538)
...++-|+.|+..++|.+.+-+ +|.- -.|+-+. .|.+.. +=++++++.++++||++|--+ |+|
T Consensus 18 ~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~---~di~elv~yA~~rgI~vIPEI---d~P 91 (311)
T cd06570 18 AVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQ---EQIREVVAYARDRGIRVVPEI---DVP 91 (311)
T ss_pred HHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCH---HHHHHHHHHHHHcCCEEEEee---cCc
Confidence 3467789999999999888876 6643 3343211 134555 557999999999999988776 777
Q ss_pred hHH
Q 036046 189 QGL 191 (538)
Q Consensus 189 ~~l 191 (538)
.-.
T Consensus 92 GH~ 94 (311)
T cd06570 92 GHA 94 (311)
T ss_pred cch
Confidence 543
No 162
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=23.30 E-value=1.3e+02 Score=35.08 Aligned_cols=56 Identities=16% Similarity=0.229 Sum_probs=35.7
Q ss_pred HHHHHHhCCCEEEeccccccc----------------ccCCCCCCCCCh-----hHHHHHHHHHHHHHHcCCEEEEEec
Q 036046 126 MKAVKELGVDSYRFSISWTRI----------------LPNGSLSGGVNQ-----MGIDHYNSLIDELIKYGIKPFVTIF 183 (538)
Q Consensus 126 i~lm~~lG~~~~Rfsi~Wsri----------------~P~~~~~g~~n~-----~gl~~y~~~i~~l~~~gI~p~vtL~ 183 (538)
|.-+|+||++++-++=--.-. -|..- -.++. ..++=+++||++|.++||++|+.+.
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y--~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGF--FAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccc--cccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 789999999998765421111 00000 01111 0234589999999999999999864
No 163
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=23.27 E-value=5e+02 Score=26.69 Aligned_cols=72 Identities=18% Similarity=0.086 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCCCCchhHHHHHHHHHHHHHHhCCccceEEeeccchhhhhccccc
Q 036046 162 DHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGPLNRSFVDDFKDYAEICFKSFGDRVKNWMTINEPLIASKYGYES 241 (538)
Q Consensus 162 ~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~fgd~V~~W~t~NEp~~~~~~gy~~ 241 (538)
+-+.+.++.++++||++.+.+. .++|. +..+.+.+=++.+.+-=-+.|+.....-+|++....-|..
T Consensus 163 ~~~~~ai~~l~~~gi~v~~~lI-~GlPg------------et~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~~ 229 (302)
T TIGR01212 163 ACYVDAVKRARKRGIKVCSHVI-LGLPG------------EDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYEK 229 (302)
T ss_pred HHHHHHHHHHHHcCCEEEEeEE-ECCCC------------CCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHHc
Confidence 4567899999999999766542 35552 3456677777776554446788888888888765555666
Q ss_pred CcCCC
Q 036046 242 GTAAP 246 (538)
Q Consensus 242 G~~pP 246 (538)
|.+.|
T Consensus 230 g~~~~ 234 (302)
T TIGR01212 230 GELKT 234 (302)
T ss_pred CCCCC
Confidence 66654
No 164
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=23.12 E-value=2.7e+02 Score=29.14 Aligned_cols=67 Identities=15% Similarity=0.285 Sum_probs=46.0
Q ss_pred hchHHHHHHHHHhCCCEEEeccc----c-------cccccCCC-------CCCCCChhHHHHHHHHHHHHHHcCCEEEEE
Q 036046 120 RRYKEDMKAVKELGVDSYRFSIS----W-------TRILPNGS-------LSGGVNQMGIDHYNSLIDELIKYGIKPFVT 181 (538)
Q Consensus 120 ~~y~eDi~lm~~lG~~~~Rfsi~----W-------sri~P~~~-------~~g~~n~~gl~~y~~~i~~l~~~gI~p~vt 181 (538)
...++-|+.|+..++|.+.+-++ | +.+-..+. ..|.+-. +=++++++.++++||++|--
T Consensus 18 ~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~---~di~elv~yA~~rgI~vIPE 94 (329)
T cd06568 18 AEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQ---EDYKDIVAYAAERHITVVPE 94 (329)
T ss_pred HHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCH---HHHHHHHHHHHHcCCEEEEe
Confidence 45788899999999998887762 3 23322110 0134555 44789999999999998776
Q ss_pred ecCCCCchHHH
Q 036046 182 IFHFDSPQGLQ 192 (538)
Q Consensus 182 L~H~~~P~~l~ 192 (538)
+ |+|.-..
T Consensus 95 i---D~PGH~~ 102 (329)
T cd06568 95 I---DMPGHTN 102 (329)
T ss_pred c---CCcHHHH
Confidence 6 7776543
No 165
>PTZ00445 p36-lilke protein; Provisional
Probab=23.03 E-value=1.4e+02 Score=29.54 Aligned_cols=51 Identities=25% Similarity=0.358 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHcCCEEEEEecCCCCchHHHHh-hCCCCCch---------hHHHHHHHHHHHHH
Q 036046 162 DHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEK-YGGPLNRS---------FVDDFKDYAEICFK 216 (538)
Q Consensus 162 ~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~-~ggw~~~~---------~~~~f~~ya~~~~~ 216 (538)
+--+.+++.|++.||+.+++= +|.- |... -|||.++. ..+.|....+.+-+
T Consensus 29 ~~~~~~v~~L~~~GIk~Va~D--~DnT--lI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~ 89 (219)
T PTZ00445 29 ESADKFVDLLNECGIKVIASD--FDLT--MITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKN 89 (219)
T ss_pred HHHHHHHHHHHHcCCeEEEec--chhh--hhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHH
Confidence 445788999999999987753 2332 1221 28999997 55666666555543
No 166
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=22.88 E-value=3.2e+02 Score=28.09 Aligned_cols=65 Identities=15% Similarity=0.243 Sum_probs=45.6
Q ss_pred chHHHHHHHHHhCCCEEEeccc----ccccccCCC-CCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHH
Q 036046 121 RYKEDMKAVKELGVDSYRFSIS----WTRILPNGS-LSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQ 192 (538)
Q Consensus 121 ~y~eDi~lm~~lG~~~~Rfsi~----Wsri~P~~~-~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~ 192 (538)
-+++-|++|+.+|+|.+.+=++ +.. .|.-. .+|.+.. +=++++++.++++||++|--+ |.|--+.
T Consensus 18 ~lk~~id~ma~~k~N~l~lhl~D~f~~~~-~p~~~~~~~~yT~---~ei~ei~~yA~~~gI~vIPei---d~pGH~~ 87 (301)
T cd06565 18 YLKKLLRLLALLGANGLLLYYEDTFPYEG-EPEVGRMRGAYTK---EEIREIDDYAAELGIEVIPLI---QTLGHLE 87 (301)
T ss_pred HHHHHHHHHHHcCCCEEEEEEecceecCC-CcccccCCCCcCH---HHHHHHHHHHHHcCCEEEecC---CCHHHHH
Confidence 4788899999999999887553 221 12210 0266777 447999999999999988766 6665443
No 167
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=22.59 E-value=4.8e+02 Score=26.74 Aligned_cols=32 Identities=22% Similarity=0.254 Sum_probs=29.4
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCEEEEEecCC
Q 036046 154 GGVNQMGIDHYNSLIDELIKYGIKPFVTIFHF 185 (538)
Q Consensus 154 g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~ 185 (538)
|-++.+-++.++++++.+.++|-..++=|+|.
T Consensus 69 ~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~ 100 (327)
T cd02803 69 GIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHA 100 (327)
T ss_pred CcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCC
Confidence 67899999999999999999999999999984
No 168
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=22.43 E-value=5e+02 Score=25.95 Aligned_cols=46 Identities=26% Similarity=0.340 Sum_probs=37.4
Q ss_pred HHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEec
Q 036046 123 KEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIF 183 (538)
Q Consensus 123 ~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~ 183 (538)
.+|++.+.+.|++.+|+..+.+.+ .-..++++.+++.|+++.+++.
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~---------------~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEA---------------DVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhH---------------HHHHHHHHHHHHCCCeEEEEEE
Confidence 699999999999999988766532 1247789999999999988884
No 169
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=22.38 E-value=2.2e+02 Score=29.43 Aligned_cols=76 Identities=14% Similarity=0.124 Sum_probs=49.4
Q ss_pred CChhHHHHHHHHHHHHHHcCCE--EEEE---------------ecCCCCchHHHHhhCCCCCc-h-hHHHHHHHHHHHHH
Q 036046 156 VNQMGIDHYNSLIDELIKYGIK--PFVT---------------IFHFDSPQGLQEKYGGPLNR-S-FVDDFKDYAEICFK 216 (538)
Q Consensus 156 ~n~~gl~~y~~~i~~l~~~gI~--p~vt---------------L~H~~~P~~l~~~~ggw~~~-~-~~~~f~~ya~~~~~ 216 (538)
+|. +-|.++++.+++.||+ .+++ +++-.+|.|+.+++-..... + ..+.=.+||....+
T Consensus 186 Fd~---~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~l~~~l~~~~d~~~~~~~~Gi~~a~e~i~ 262 (296)
T PRK09432 186 FDV---ESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAWMAKMFDGLDDDAETRKLVGASIAMDMVK 262 (296)
T ss_pred cch---HHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 566 6688999999999965 2332 35789999999887666543 2 23344456666666
Q ss_pred HhCCc-c--ceEEeeccchhh
Q 036046 217 SFGDR-V--KNWMTINEPLIA 234 (538)
Q Consensus 217 ~fgd~-V--~~W~t~NEp~~~ 234 (538)
++-+. | -|..|+|-+...
T Consensus 263 ~L~~~gv~GvH~yt~n~~~~~ 283 (296)
T PRK09432 263 ILSREGVKDFHFYTLNRAELT 283 (296)
T ss_pred HHHHCCCCEEEEecCCChHHH
Confidence 54332 3 345578887765
No 170
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=22.20 E-value=1.3e+02 Score=26.41 Aligned_cols=52 Identities=23% Similarity=0.292 Sum_probs=36.2
Q ss_pred HHHHHHHHHhCCCEEEecc-ccccc-ccCCCCCCCCChhHHHHHHHHHHHHHHcCCEE
Q 036046 123 KEDMKAVKELGVDSYRFSI-SWTRI-LPNGSLSGGVNQMGIDHYNSLIDELIKYGIKP 178 (538)
Q Consensus 123 ~eDi~lm~~lG~~~~Rfsi-~Wsri-~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p 178 (538)
++.++.|+++|++.+++|+ +-..- ..... + .....+-.-+.++.|.++|+.+
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~--~--~~~~~~~~~~~l~~l~~~g~~~ 143 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLRII--N--RGKSFERVLEALERLKEAGIPR 143 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHHHH--S--STSHHHHHHHHHHHHHHTTSET
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhhhh--c--CCCCHHHHHHHHHHHHHcCCCc
Confidence 8999999999999999999 33322 11110 0 1112366778999999999984
No 171
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=21.69 E-value=1.4e+02 Score=30.84 Aligned_cols=53 Identities=26% Similarity=0.402 Sum_probs=37.1
Q ss_pred hHHHHHHHHHhCCCEEE-ecc-cc-----cccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEe
Q 036046 122 YKEDMKAVKELGVDSYR-FSI-SW-----TRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTI 182 (538)
Q Consensus 122 y~eDi~lm~~lG~~~~R-fsi-~W-----sri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 182 (538)
.+|.++.||++|++.+- .+. .- .++.|.. ... +-+.+.++.+++.||++..++
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~-----~t~---~~~l~~i~~a~~~Gi~~~s~~ 165 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNK-----LSS---DEWLEVIKTAHRLGIPTTATM 165 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCC-----CCH---HHHHHHHHHHHHcCCCceeeE
Confidence 47889999999999885 233 12 1233433 333 456799999999999988665
No 172
>PRK08508 biotin synthase; Provisional
Probab=21.62 E-value=1.9e+02 Score=29.49 Aligned_cols=56 Identities=14% Similarity=0.146 Sum_probs=40.0
Q ss_pred hHHHHHHHHHhCCCEEEecc-cccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEe
Q 036046 122 YKEDMKAVKELGVDSYRFSI-SWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTI 182 (538)
Q Consensus 122 y~eDi~lm~~lG~~~~Rfsi-~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 182 (538)
.+|.++.|+++|++++-.++ .=++++|.-. ..-++ +-.-+.++.+++.||++.-++
T Consensus 101 ~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~--~~~~~---~~~l~~i~~a~~~Gi~v~sg~ 157 (279)
T PRK08508 101 SVEQLKELKKAGIFSYNHNLETSKEFFPKIC--TTHTW---EERFQTCENAKEAGLGLCSGG 157 (279)
T ss_pred CHHHHHHHHHcCCCEEcccccchHHHhcCCC--CCCCH---HHHHHHHHHHHHcCCeeccee
Confidence 48999999999999999887 3245677641 22333 445667888999999764443
No 173
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=21.58 E-value=1.3e+02 Score=28.02 Aligned_cols=63 Identities=13% Similarity=0.142 Sum_probs=41.5
Q ss_pred hhhhchHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEE
Q 036046 117 DSYRRYKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFV 180 (538)
Q Consensus 117 d~Y~~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~v 180 (538)
......++-+++++.+|++.+++...+-...+... ...-=...++.++.+.+.+.++|+++.+
T Consensus 68 ~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~-~~~~~~~~~~~l~~l~~~a~~~gv~i~l 130 (213)
T PF01261_consen 68 EALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDD-TEENWERLAENLRELAEIAEEYGVRIAL 130 (213)
T ss_dssp HHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSS-HHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCceeecCcccccccCCC-HHHHHHHHHHHHHHHHhhhhhhcceEEE
Confidence 34667889999999999999999876411111110 0011123456778888889999987544
No 174
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=21.34 E-value=3.1e+02 Score=28.86 Aligned_cols=92 Identities=20% Similarity=0.238 Sum_probs=55.8
Q ss_pred HHHHHHHHHhCCCEEEecc-ccc-ccccCCCCCCC-CChhHHHHHHHHHHHHHHcCCEEE-EEecCCCCchHHHHhhCCC
Q 036046 123 KEDMKAVKELGVDSYRFSI-SWT-RILPNGSLSGG-VNQMGIDHYNSLIDELIKYGIKPF-VTIFHFDSPQGLQEKYGGP 198 (538)
Q Consensus 123 ~eDi~lm~~lG~~~~Rfsi-~Ws-ri~P~~~~~g~-~n~~gl~~y~~~i~~l~~~gI~p~-vtL~H~~~P~~l~~~~ggw 198 (538)
++.+++|+++|+|-+.+++ +-+ .+...- |+ .+. +-..+.|+.+++.|+..+ +.| =+++|.
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~l---gR~~~~---~~~~~ai~~lr~~g~~~v~iDl-i~GlPg--------- 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKFL---GRIHSQ---KQIIKAIENAKKAGFENISIDL-IYDTPL--------- 161 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc---CCCCCH---HHHHHHHHHHHHcCCCEEEEEe-ecCCCC---------
Confidence 6889999999999777777 543 333222 22 233 457788999999999755 444 345563
Q ss_pred CCchhHHHHHHHHHHHHHHhCCccceEEeeccchh
Q 036046 199 LNRSFVDDFKDYAEICFKSFGDRVKNWMTINEPLI 233 (538)
Q Consensus 199 ~~~~~~~~f~~ya~~~~~~fgd~V~~W~t~NEp~~ 233 (538)
++.+.|.+-.+.+.+-=-+.|......=||++
T Consensus 162 ---qt~~~~~~~l~~~~~l~~~~is~y~L~~~~gT 193 (350)
T PRK08446 162 ---DNKKLLKEELKLAKELPINHLSAYSLTIEENT 193 (350)
T ss_pred ---CCHHHHHHHHHHHHhcCCCEEEeccceecCCC
Confidence 34455665555555422244544444445543
No 175
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=21.30 E-value=5.4e+02 Score=27.59 Aligned_cols=72 Identities=24% Similarity=0.237 Sum_probs=44.5
Q ss_pred chHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEE-EEecCCCCchHHHHhhCCCC
Q 036046 121 RYKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPF-VTIFHFDSPQGLQEKYGGPL 199 (538)
Q Consensus 121 ~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~-vtL~H~~~P~~l~~~~ggw~ 199 (538)
...+-++.++++|++.+=| ....+.|-+ -...... ...+++-+.|.++||++. +|..-+..|.+ +.|++.
T Consensus 33 ~~~e~i~~la~~GfdgVE~--~~~dl~P~~---~~~~e~~-~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~---~~g~la 103 (382)
T TIGR02631 33 DPVEAVHKLAELGAYGVTF--HDDDLIPFG---APPQERD-QIVRRFKKALDETGLKVPMVTTNLFSHPVF---KDGGFT 103 (382)
T ss_pred CHHHHHHHHHHhCCCEEEe--cccccCCCC---CChhHHH-HHHHHHHHHHHHhCCeEEEeeccccCCccc---cCCCCC
Confidence 4688899999999998854 334455654 1111111 346778888999999955 44422333433 127788
Q ss_pred Cc
Q 036046 200 NR 201 (538)
Q Consensus 200 ~~ 201 (538)
++
T Consensus 104 s~ 105 (382)
T TIGR02631 104 SN 105 (382)
T ss_pred CC
Confidence 75
No 176
>PRK01060 endonuclease IV; Provisional
Probab=20.85 E-value=3.3e+02 Score=27.09 Aligned_cols=50 Identities=14% Similarity=0.260 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEE
Q 036046 122 YKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKP 178 (538)
Q Consensus 122 y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p 178 (538)
+++-++.++++|++.+-+.+.-++.... +..+. +..+++-+.+.++||+.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~----~~~~~---~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKR----KPLEE---LNIEAFKAACEKYGISP 63 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcC----CCCCH---HHHHHHHHHHHHcCCCC
Confidence 7888999999999999998765554432 23555 44566666777999984
No 177
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=20.76 E-value=3.8e+02 Score=28.20 Aligned_cols=68 Identities=18% Similarity=0.213 Sum_probs=49.2
Q ss_pred HHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCCCCchHHHHhhCCCCCch
Q 036046 123 KEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHFDSPQGLQEKYGGPLNRS 202 (538)
Q Consensus 123 ~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~~~P~~l~~~~ggw~~~~ 202 (538)
.+|++...+.|++.+|+...+++. +--.+.|+.+++.|+++.+++..-. ..
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~---------------~~~~~~i~~ak~~G~~v~~~l~~a~--------------~~ 141 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA---------------DVSEQHIGLARELGMDTVGFLMMSH--------------MA 141 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH---------------HHHHHHHHHHHHCCCeEEEEEEecc--------------CC
Confidence 589999999999999998754331 2258899999999999999886421 12
Q ss_pred hHHHHHHHHHHHHHHhCC
Q 036046 203 FVDDFKDYAEICFKSFGD 220 (538)
Q Consensus 203 ~~~~f~~ya~~~~~~fgd 220 (538)
..+.+.+.++.+. .+|-
T Consensus 142 ~~e~l~~~a~~~~-~~Ga 158 (337)
T PRK08195 142 PPEKLAEQAKLME-SYGA 158 (337)
T ss_pred CHHHHHHHHHHHH-hCCC
Confidence 3456667777654 4663
No 178
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=20.74 E-value=3.3e+02 Score=33.22 Aligned_cols=76 Identities=12% Similarity=0.124 Sum_probs=47.9
Q ss_pred CCeEEEeecCccccCCCCcCcCcccChhhhHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCccccc---C-----CCCCc
Q 036046 437 NPAIYITENGVTEQRNDNLTLDVALKDEHRVDFVLGHLYYLHEAIKNGVNVKGYFYWSAFDDFEWG---I-----GYLPR 508 (538)
Q Consensus 437 ~pPI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hL~~~~kAi~dGv~v~GY~~WSl~Dn~EW~---~-----Gy~~R 508 (538)
..|++++|.|.+..+. .|. +++|. ++++.-=.+.|=|.|.++|-=-.. + +|.--
T Consensus 505 ~kP~i~~Ey~hamgn~-----~g~---------~~~yw----~~~~~~p~l~GgfiW~~~D~~~~~~~~~G~~~~~ygGd 566 (1021)
T PRK10340 505 PKPRILCEYAHAMGNG-----PGG---------LTEYQ----NVFYKHDCIQGHYVWEWCDHGIQAQDDNGNVWYKYGGD 566 (1021)
T ss_pred CCcEEEEchHhccCCC-----CCC---------HHHHH----HHHHhCCceeEEeeeecCcccccccCCCCCEEEEECCC
Confidence 4589999998766432 111 23333 356666789999999999931110 0 12222
Q ss_pred c------------ceEEEeCCCCCccccChhHHHHHHHHh
Q 036046 509 F------------GLYFIDYNNNLTRIPKESAKWVRDFLE 536 (538)
Q Consensus 509 f------------GL~~VD~~~~~~R~pK~S~~~y~~ii~ 536 (538)
| |||. ..|+||++++.||++.+
T Consensus 567 ~g~~p~~~~f~~~Glv~------~dr~p~p~~~e~k~~~~ 600 (1021)
T PRK10340 567 YGDYPNNYNFCIDGLIY------PDQTPGPGLKEYKQVIA 600 (1021)
T ss_pred CCCCCCCcCcccceeEC------CCCCCChhHHHHHHhcc
Confidence 3 4432 34789999999999864
No 179
>PTZ00445 p36-lilke protein; Provisional
Probab=20.49 E-value=2e+02 Score=28.47 Aligned_cols=56 Identities=20% Similarity=0.208 Sum_probs=38.4
Q ss_pred HHHHHHhCCCEEEecccccccccCCCCCCCCChh---------HHHHHHHHHHHHHHcCCEEEEEec
Q 036046 126 MKAVKELGVDSYRFSISWTRILPNGSLSGGVNQM---------GIDHYNSLIDELIKYGIKPFVTIF 183 (538)
Q Consensus 126 i~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~---------gl~~y~~~i~~l~~~gI~p~vtL~ 183 (538)
++++++.|++++=+.+.=.-|---. .|-.++. +-.-...++.+|.++||..+|-++
T Consensus 35 v~~L~~~GIk~Va~D~DnTlI~~Hs--gG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTf 99 (219)
T PTZ00445 35 VDLLNECGIKVIASDFDLTMITKHS--GGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTF 99 (219)
T ss_pred HHHHHHcCCeEEEecchhhhhhhhc--ccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEc
Confidence 5789999999998877554443111 0323332 334578899999999999887775
No 180
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=20.40 E-value=1.6e+02 Score=29.88 Aligned_cols=61 Identities=13% Similarity=0.075 Sum_probs=45.0
Q ss_pred HHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEecCC
Q 036046 124 EDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTIFHF 185 (538)
Q Consensus 124 eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~H~ 185 (538)
.+++++.+.|++.+|+.++=|-..-... -|.--.+.++...+.++.+++.|+++.++..++
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~-~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~ 142 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEA-LGTTLEENLAMIRDSVAYLKSHGREVIFDAEHF 142 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHH-cCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec
Confidence 6899999999999999875443322210 022235677889999999999999998876665
No 181
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=20.34 E-value=2.6e+02 Score=27.35 Aligned_cols=43 Identities=19% Similarity=0.282 Sum_probs=34.7
Q ss_pred HHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEEEe
Q 036046 127 KAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFVTI 182 (538)
Q Consensus 127 ~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 182 (538)
+++|++|++..=++=|=.| +.+. | -.+-+..++++||+|+|+.
T Consensus 75 ~mLkd~G~~~viiGHSERR-f~Et------d------i~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 75 EMLKDIGAKGTLINHSERR-MKLA------D------IEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHcCCCEEEECcccCC-CCcc------H------HHHHHHHHHHCCCEEEEEE
Confidence 8999999998888776666 3332 1 4777889999999999999
No 182
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=20.04 E-value=4.3e+02 Score=26.33 Aligned_cols=54 Identities=15% Similarity=0.107 Sum_probs=38.7
Q ss_pred hchHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHc-CCEEEE
Q 036046 120 RRYKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKY-GIKPFV 180 (538)
Q Consensus 120 ~~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~-gI~p~v 180 (538)
..+++.+++++++|++.+=+.+......+.. ..+. +..+++.+.+.++ |+...+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~----~~~~---~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR----PLKK---ERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC----CCCH---HHHHHHHHHHHHcCCCcEEE
Confidence 5689999999999999998888665444433 1244 4567777777788 666444
No 183
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=20.03 E-value=2.1e+02 Score=28.64 Aligned_cols=60 Identities=5% Similarity=0.089 Sum_probs=39.0
Q ss_pred hhhchHHHHHHHHHhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCEEEE
Q 036046 118 SYRRYKEDMKAVKELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIKPFV 180 (538)
Q Consensus 118 ~Y~~y~eDi~lm~~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~v 180 (538)
.-.+++.-+++++++|.+.++++- .+..+... ....-...++.++++++.+.++||+..+
T Consensus 92 ~~~~~~~~i~~a~~lG~~~v~~~~--~~~~~~~~-~~~~~~~~~~~l~~l~~~A~~~Gv~l~l 151 (279)
T TIGR00542 92 GLEIMEKAIQLARDLGIRTIQLAG--YDVYYEEH-DEETRRRFREGLKEAVELAARAQVTLAV 151 (279)
T ss_pred HHHHHHHHHHHHHHhCCCEEEecC--cccccCcC-CHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 455688889999999999999852 11111110 0111123456778888999999997555
No 184
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=20.02 E-value=2.7e+02 Score=28.24 Aligned_cols=97 Identities=20% Similarity=0.245 Sum_probs=61.9
Q ss_pred hHHHHHHHH---HhCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHHcCCE-EEE-Ee--------------
Q 036046 122 YKEDMKAVK---ELGVDSYRFSISWTRILPNGSLSGGVNQMGIDHYNSLIDELIKYGIK-PFV-TI-------------- 182 (538)
Q Consensus 122 y~eDi~lm~---~lG~~~~Rfsi~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~-p~v-tL-------------- 182 (538)
.++|++.|+ ++|.+. ++.+. -+|. +-+.++++.|++.||+ |++ ++
T Consensus 143 ~~~~~~~L~~K~~aGA~f---------~iTQ~----~fd~---~~~~~~~~~~~~~gi~~PIi~Gi~p~~s~k~~~~~~~ 206 (272)
T TIGR00676 143 LEEDIENLKRKVDAGADY---------AITQL----FFDN---DDYYRFVDRCRAAGIDVPIIPGIMPITNFKQLLRFAE 206 (272)
T ss_pred HHHHHHHHHHHHHcCCCe---------Eeecc----ccCH---HHHHHHHHHHHHcCCCCCEecccCCcCCHHHHHHHHh
Confidence 456666443 567752 34443 3677 6688999999999766 322 22
Q ss_pred -cCCCCchHHHHhhCCCCCc--hhHHHHHHHHHHHHHHhCCc-cc--eEEeeccchhh
Q 036046 183 -FHFDSPQGLQEKYGGPLNR--SFVDDFKDYAEICFKSFGDR-VK--NWMTINEPLIA 234 (538)
Q Consensus 183 -~H~~~P~~l~~~~ggw~~~--~~~~~f~~ya~~~~~~fgd~-V~--~W~t~NEp~~~ 234 (538)
..-++|.|+.++.-...+. +..+.-.++|..+++++-+. +. |-.|+|=+...
T Consensus 207 ~~Gv~vP~~~~~~l~~~~~~~~~~~~~gi~~~~~~~~~l~~~g~~GiHl~t~n~~~~~ 264 (272)
T TIGR00676 207 RCGAEIPAWLVKRLEKYDDDPEEVRAVGIEYATDQCEDLIAEGVPGIHFYTLNRADAT 264 (272)
T ss_pred ccCCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEcCCCCHHHH
Confidence 3578899999876554442 34456777787777776432 43 66678776654
Done!