BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036049
(517 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 98.6 bits (244), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 119/465 (25%), Positives = 180/465 (38%), Gaps = 107/465 (23%)
Query: 82 SLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRS-----------C------- 123
+L K+ L+ L+L+ N+F S E+ + NLS SL LDL S C
Sbjct: 335 TLLKMRGLKVLDLSFNEF-SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 393
Query: 124 --------GFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNL--------------- 160
GF GK+P ++ N + L L+L FN SG + S+G+L
Sbjct: 394 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 453
Query: 161 ---------RSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWL 211
++LE + + + +G+I S L N T L + ++ N + G++ KW+
Sbjct: 454 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN------RLTGEIPKWI 507
Query: 212 LDPNMQXXXXXXXXXXXXTGFDQHLVLLPGNNEE-----PRTGCGFSKLRIIDLSDNRFT 266
G ++L +L +N P L +DL+ N F
Sbjct: 508 -------------------GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 548
Query: 267 GKLPSKSFLCWNAMKIVNASELRYLQ--------------DVLSPSG--KXXXXXXXXXX 310
G +P+ F + + RY+ ++L G
Sbjct: 549 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 608
Query: 311 XXNIKGRMMAYNKIPDI-----LAGIILSNKSFDGAIPASISNLKXXXXXXXXXXXXXXX 365
NI R+ + P + + +S G IP I ++
Sbjct: 609 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 668
Query: 366 IPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDN 425
IP +G+L L LDLS+NK GRIPQ + LT L ++S+N L+G IP+ QF TF
Sbjct: 669 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPP 728
Query: 426 TSFDGNSGLCGKPLSKGCE----SGEAPSNEDHTEGSEESLFSGA 466
F N GLCG PL + C+ G A H E F GA
Sbjct: 729 AKFLNNPGLCGYPLPR-CDPSNADGYAHHQRSHGRRLENLYFQGA 772
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 96/356 (26%), Positives = 151/356 (42%), Gaps = 54/356 (15%)
Query: 66 LNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSC-SLKLLDLRSCG 124
LN+S + G I L L++L+LA N F + EI P+ ++ +C +L LDL
Sbjct: 249 LNISSNQFVGPIPP----LPLKSLQYLSLAENKF-TGEI-PDFLSGACDTLTGLDLSGNH 302
Query: 125 FWGKVPHSIGNFTRLQFLYLGFNNFSGDL-LGSIGNLRSLEAIYMSKCNFSGQITSSLRN 183
F+G VP G+ + L+ L L NNFSG+L + ++ +R L+ + +S FSG++ SL N
Sbjct: 303 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 362
Query: 184 LT-ELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQXXXXXXXXXXXXTGFDQHLVLLPGN 242
L+ L+ LD++ N++ G +LP
Sbjct: 363 LSASLLTLDLSSNNFSGP-------------------------------------ILPNL 385
Query: 243 NEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPS-GKX 301
+ P+ + L+ + L +N FTGK+P C + + YL + S G
Sbjct: 386 CQNPK-----NTLQELYLQNNGFTGKIPPTLSNCSELVSL--HLSFNYLSGTIPSSLGSL 438
Query: 302 XXXXXXXXXXXNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKXXXXXXXXXXX 361
++G + L +IL G IP+ +SN
Sbjct: 439 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 498
Query: 362 XXXXIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQG 417
IP +G L NL L LSNN FSG IP +L + L + +++ N G IP
Sbjct: 499 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 554
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 87/360 (24%), Positives = 144/360 (40%), Gaps = 55/360 (15%)
Query: 61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDL 120
G + L +S + + G ++ S + V+LE+L+++ N+F++ P + + S +L+ LD+
Sbjct: 175 GELKHLAISGNKISGDVDVS----RCVNLEFLDVSSNNFSTG--IPFLGDCS-ALQHLDI 227
Query: 121 RSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSS 180
G +I T L+ L + N F G + L+SL+ + +++ F+G+I
Sbjct: 228 SGNKLSGDFSRAISTCTELKLLNISSNQFVGPI--PPLPLKSLQYLSLAENKFTGEIPDF 285
Query: 181 LRNLTE-LVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQXXXXXXXXXXXXTGFDQHLVLL 239
L + L LD++ N + G + P F L +
Sbjct: 286 LSGACDTLTGLDLSGNHFYGAVP-----------PFFGSCSLLESLALSSNNFSGELPM- 333
Query: 240 PGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSG 299
T L+++DLS N F+G+LP + N S D+ S
Sbjct: 334 -------DTLLKMRGLKVLDLSFNEFSGELPES---------LTNLSASLLTLDLSS--- 374
Query: 300 KXXXXXXXXXXXXNIKGRMMAY--NKIPDILAGIILSNKSFDGAIPASISNLKXXXXXXX 357
N G ++ + L + L N F G IP ++SN
Sbjct: 375 ------------NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 422
Query: 358 XXXXXXXXIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQG 417
IPS LG+L+ L L L N G IPQ+L+ + L + N LTG IP G
Sbjct: 423 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 482
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 32/148 (21%)
Query: 59 NTGHVVKLNLSHSCLFGSINSS-SSLYKLVHLE-WLNLALNDFNSSEIQPEIINLSCSLK 116
N +V L+LS + L G+I SS SL KL L+ WLN+
Sbjct: 413 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM---------------------- 450
Query: 117 LLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQ 176
G++P + L+ L L FN+ +G++ + N +L I +S +G+
Sbjct: 451 --------LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 502
Query: 177 ITSSLRNLTELVVLDMAQNSYGGTMEIE 204
I + L L +L ++ NS+ G + E
Sbjct: 503 IPKWIGRLENLAILKLSNNSFSGNIPAE 530
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 370 LGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIP----QGKQFATFDN 425
LG+ + L+ LD+S NK SG + + T L N+S N G IP + Q+ +
Sbjct: 216 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAE 275
Query: 426 TSFDG 430
F G
Sbjct: 276 NKFTG 280
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 90/389 (23%), Positives = 153/389 (39%), Gaps = 80/389 (20%)
Query: 45 NVDCCSWDGVHCNKNTGHVVKLNLSHSCL---FGSINSSSSLYKLVHLEWLNLALNDFNS 101
N + C++DGV C + V ++LS L F +++SS + +L+ +
Sbjct: 33 NKNPCTFDGVTCRDD--KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLS-------N 83
Query: 102 SEIQPEIINLSCSLKL--LDLRSCGFWGKVPH--SIGNFTRLQFLYLGFN--NFSGDLLG 155
S I + CS L LDL G V S+G+ + L+FL + N +F G + G
Sbjct: 84 SHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSG 143
Query: 156 SIGNLRSLEAIYMSKCNFSGQITSSL---RNLTELVVLDMAQNSYGGTMEIEGKVHKWLL 212
+ L SLE + +S + SG EL L ++ N G +++ V+ L
Sbjct: 144 GL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFL 202
Query: 213 DPNMQXXXXXXXXXXXXTGFDQHLVL----LPGNNEEPRTGCGFSKLRIIDLSDNRFTGK 268
D + + QHL + L G+ + C ++L+++++S N+F G
Sbjct: 203 DVSSNNFSTGIPFLGDCSAL-QHLDISGNKLSGDFSRAISTC--TELKLLNISSNQFVGP 259
Query: 269 LPSKSFLCWNAMKIVNASELRYLQDVLSPSGKXXXXXXXXXXXXNIKGRMMAYNKIPDIL 328
+P + + + D LS + D L
Sbjct: 260 IPPLPLKSLQYLSLAENKFTGEIPDFLSGAC--------------------------DTL 293
Query: 329 AGIILSNKSFDGAIPASISNLKXXXXXXXXXXXXXXXIPSCLGNLTNLESLDLSNNKFSG 388
G+ LS F GA+P G+ + LESL LS+N FSG
Sbjct: 294 TGLDLSGNHFYGAVPP------------------------FFGSCSLLESLALSSNNFSG 329
Query: 389 RIPQQ-LVELTFLAFFNVSDNYLTGLIPQ 416
+P L+++ L ++S N +G +P+
Sbjct: 330 ELPMDTLLKMRGLKVLDLSFNEFSGELPE 358
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 116/448 (25%), Positives = 177/448 (39%), Gaps = 107/448 (23%)
Query: 82 SLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRS-----------C------- 123
+L K+ L+ L+L+ N+F S E+ + NLS SL LDL S C
Sbjct: 338 TLLKMRGLKVLDLSFNEF-SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396
Query: 124 --------GFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNL--------------- 160
GF GK+P ++ N + L L+L FN SG + S+G+L
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456
Query: 161 ---------RSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWL 211
++LE + + + +G+I S L N T L + ++ N + G++ KW+
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN------RLTGEIPKWI 510
Query: 212 LDPNMQXXXXXXXXXXXXTGFDQHLVLLPGNNEE-----PRTGCGFSKLRIIDLSDNRFT 266
G ++L +L +N P L +DL+ N F
Sbjct: 511 -------------------GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551
Query: 267 GKLPSKSFLCWNAMKIVNASELRYLQ--------------DVLSPSG--KXXXXXXXXXX 310
G +P+ F + + RY+ ++L G
Sbjct: 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611
Query: 311 XXNIKGRMMAYNKIPDI-----LAGIILSNKSFDGAIPASISNLKXXXXXXXXXXXXXXX 365
NI R+ + P + + +S G IP I ++
Sbjct: 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 671
Query: 366 IPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDN 425
IP +G+L L LDLS+NK GRIPQ + LT L ++S+N L+G IP+ QF TF
Sbjct: 672 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPP 731
Query: 426 TSFDGNSGLCGKPLSKGCESGEAPSNED 453
F N GLCG PL + C+ PSN D
Sbjct: 732 AKFLNNPGLCGYPLPR-CD----PSNAD 754
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 96/356 (26%), Positives = 151/356 (42%), Gaps = 54/356 (15%)
Query: 66 LNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSC-SLKLLDLRSCG 124
LN+S + G I L L++L+LA N F + EI P+ ++ +C +L LDL
Sbjct: 252 LNISSNQFVGPIPP----LPLKSLQYLSLAENKF-TGEI-PDFLSGACDTLTGLDLSGNH 305
Query: 125 FWGKVPHSIGNFTRLQFLYLGFNNFSGDL-LGSIGNLRSLEAIYMSKCNFSGQITSSLRN 183
F+G VP G+ + L+ L L NNFSG+L + ++ +R L+ + +S FSG++ SL N
Sbjct: 306 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 365
Query: 184 LT-ELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQXXXXXXXXXXXXTGFDQHLVLLPGN 242
L+ L+ LD++ N++ G +LP
Sbjct: 366 LSASLLTLDLSSNNFSGP-------------------------------------ILPNL 388
Query: 243 NEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPS-GKX 301
+ P+ + L+ + L +N FTGK+P C + + YL + S G
Sbjct: 389 CQNPK-----NTLQELYLQNNGFTGKIPPTLSNCSELVSL--HLSFNYLSGTIPSSLGSL 441
Query: 302 XXXXXXXXXXXNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKXXXXXXXXXXX 361
++G + L +IL G IP+ +SN
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501
Query: 362 XXXXIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQG 417
IP +G L NL L LSNN FSG IP +L + L + +++ N G IP
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 87/360 (24%), Positives = 144/360 (40%), Gaps = 55/360 (15%)
Query: 61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDL 120
G + L +S + + G ++ S + V+LE+L+++ N+F++ P + + S +L+ LD+
Sbjct: 178 GELKHLAISGNKISGDVDVS----RCVNLEFLDVSSNNFSTG--IPFLGDCS-ALQHLDI 230
Query: 121 RSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSS 180
G +I T L+ L + N F G + L+SL+ + +++ F+G+I
Sbjct: 231 SGNKLSGDFSRAISTCTELKLLNISSNQFVGPI--PPLPLKSLQYLSLAENKFTGEIPDF 288
Query: 181 LRNLTE-LVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQXXXXXXXXXXXXTGFDQHLVLL 239
L + L LD++ N + G + P F L +
Sbjct: 289 LSGACDTLTGLDLSGNHFYGAVP-----------PFFGSCSLLESLALSSNNFSGELPM- 336
Query: 240 PGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSG 299
T L+++DLS N F+G+LP + N S D+ S
Sbjct: 337 -------DTLLKMRGLKVLDLSFNEFSGELPES---------LTNLSASLLTLDLSS--- 377
Query: 300 KXXXXXXXXXXXXNIKGRMMAY--NKIPDILAGIILSNKSFDGAIPASISNLKXXXXXXX 357
N G ++ + L + L N F G IP ++SN
Sbjct: 378 ------------NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425
Query: 358 XXXXXXXXIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQG 417
IPS LG+L+ L L L N G IPQ+L+ + L + N LTG IP G
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 32/148 (21%)
Query: 59 NTGHVVKLNLSHSCLFGSINSS-SSLYKLVHLE-WLNLALNDFNSSEIQPEIINLSCSLK 116
N +V L+LS + L G+I SS SL KL L+ WLN+
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM---------------------- 453
Query: 117 LLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQ 176
G++P + L+ L L FN+ +G++ + N +L I +S +G+
Sbjct: 454 --------LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Query: 177 ITSSLRNLTELVVLDMAQNSYGGTMEIE 204
I + L L +L ++ NS+ G + E
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAE 533
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 370 LGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIP----QGKQFATFDN 425
LG+ + L+ LD+S NK SG + + T L N+S N G IP + Q+ +
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAE 278
Query: 426 TSFDG 430
F G
Sbjct: 279 NKFTG 283
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 92/392 (23%), Positives = 161/392 (41%), Gaps = 86/392 (21%)
Query: 45 NVDCCSWDGVHCNKNTGHVVKLNLSHSCL---FGSINSSSSLYKLVHLEWLNLALNDFNS 101
N + C++DGV C + V ++LS L F +++SS + +L+ +
Sbjct: 36 NKNPCTFDGVTCRDD--KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLS-------N 86
Query: 102 SEIQPEIINLSCSLKL--LDLRSCGFWGKVPH--SIGNFTRLQFLYLGFN--NFSGDLLG 155
S I + CS L LDL G V S+G+ + L+FL + N +F G + G
Sbjct: 87 SHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSG 146
Query: 156 SIGNLRSLEAIYMSKCNFSGQITSSL---RNLTELVVLDMAQNSYGGTMEIEGKVHKWLL 212
+ L SLE + +S + SG EL L ++ N G +++ V+ L
Sbjct: 147 GL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFL 205
Query: 213 DPNMQXXXXXXXXXXXXTGFDQHLVL----LPGNNEEPRTGCGFSKLRIIDLSDNRFTGK 268
D + + QHL + L G+ + C ++L+++++S N+F G
Sbjct: 206 DVSSNNFSTGIPFLGDCSAL-QHLDISGNKLSGDFSRAISTC--TELKLLNISSNQFVGP 262
Query: 269 LPSKSFLCWNAMKIVNASELRY---LQDVLSPSGKXXXXXXXXXXXXNIKGRMMAYNKIP 325
+P L +++ ++ +E ++ + D LS +
Sbjct: 263 IPP---LPLKSLQYLSLAENKFTGEIPDFLSGAC-------------------------- 293
Query: 326 DILAGIILSNKSFDGAIPASISNLKXXXXXXXXXXXXXXXIPSCLGNLTNLESLDLSNNK 385
D L G+ LS F GA+P G+ + LESL LS+N
Sbjct: 294 DTLTGLDLSGNHFYGAVPP------------------------FFGSCSLLESLALSSNN 329
Query: 386 FSGRIPQQ-LVELTFLAFFNVSDNYLTGLIPQ 416
FSG +P L+++ L ++S N +G +P+
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 38/65 (58%)
Query: 375 NLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGL 434
NL LDL NN+ G +PQ L +L FL NVS N L G IPQG FD +++ N L
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304
Query: 435 CGKPL 439
CG PL
Sbjct: 305 CGSPL 309
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 30/76 (39%)
Query: 340 GAIPASISNLKXXXXXXXXXXXXXXXIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTF 399
G IP +I+ L IP L + L +LD S N SG +P + L
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 400 LAFFNVSDNYLTGLIP 415
L N ++G IP
Sbjct: 151 LVGITFDGNRISGAIP 166
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 366 IPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQG-KQFATFD 424
IP + LT L L +++ SG IP L ++ L + S N L+G +P
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152
Query: 425 NTSFDGN 431
+FDGN
Sbjct: 153 GITFDGN 159
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 109 INLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEA 165
+ LS +L LDLR+ +G +P + L L + FNN G++ GNL+ +
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDV 295
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 32/176 (18%)
Query: 53 GVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQP------ 106
G C + ++ KL+LSHS + S + L L HL++LNL+ N+ E Q
Sbjct: 341 GTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQ 400
Query: 107 -EIINLSCS----------------LKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNF 149
E+++++ + L++L+L C H + L+ L L N+F
Sbjct: 401 LELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSF 460
Query: 150 SG------DLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGG 199
+LL +G SLE + +S CN + L + LD++ NS G
Sbjct: 461 QDGSISKTNLLQMVG---SLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTG 513
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 62 HVVK-LNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEI-QPEIINLSCSLKLLD 119
H+++ LNLSH CL + N L L L LNL N F I + ++ + SL++L
Sbjct: 424 HLLRVLNLSH-CLLDTSNQHL-LAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILI 481
Query: 120 LRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSL 163
L SC + + L L N+ +GD + ++ +L+ L
Sbjct: 482 LSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL 525
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 32/173 (18%)
Query: 53 GVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALND---FNSSEI----Q 105
GV C + G++ L+LSH+ + S S L L HL+ LNL+ N+ S Q
Sbjct: 339 GVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQ 398
Query: 106 PEIINLSCS----------------LKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNF 149
E+++L+ + L++L+L C H + L+ L L N+F
Sbjct: 399 LELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHF 458
Query: 150 SG------DLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNS 196
+LL ++G SLE + +S C + +L ++ +D++ NS
Sbjct: 459 QDGTITKTNLLQTVG---SLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNS 508
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 3/129 (2%)
Query: 86 LVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLG 145
L LE L +A N F + + P+I +L LDL C P + + + LQ L +
Sbjct: 149 LSSLEVLKMAGNSFQENFL-PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207
Query: 146 FNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNL-TELVVLDMAQNSYGGTMEIE 204
NNF L SL+ + S + L++ + L L++ QN + T E +
Sbjct: 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 267
Query: 205 GKVHKWLLD 213
+ +W+ D
Sbjct: 268 SFL-QWIKD 275
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 3/129 (2%)
Query: 86 LVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLG 145
L LE L +A N F + + P+I +L LDL C P + + + LQ L +
Sbjct: 468 LSSLEVLKMAGNSFQENFL-PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 526
Query: 146 FNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNL-TELVVLDMAQNSYGGTMEIE 204
NNF L SL+ + S + L++ + L L++ QN + T E +
Sbjct: 527 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 586
Query: 205 GKVHKWLLD 213
+ +W+ D
Sbjct: 587 SFL-QWIKD 594
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 366 IPSCLGNLTNLESLDLSNNK 385
+P NLTNLE LDLS+NK
Sbjct: 165 LPEYFSNLTNLEHLDLSSNK 184
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 366 IPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDN 425
+P+ + NL+NL LDLS+N+ + +P +L L +F DN +T L +F N
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVTTL---PWEFGNLCN 317
Query: 426 TSFDGNSGLCGKPLSK 441
F G+ G PL K
Sbjct: 318 LQF---LGVEGNPLEK 330
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 3/129 (2%)
Query: 86 LVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLG 145
L LE L +A N F + + P+I +L LDL C P + + + LQ L +
Sbjct: 444 LSSLEVLKMAGNSFQENFL-PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 502
Query: 146 FNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNL-TELVVLDMAQNSYGGTMEIE 204
NNF L SL+ + S + L++ + L L++ QN + T E +
Sbjct: 503 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 562
Query: 205 GKVHKWLLD 213
+ +W+ D
Sbjct: 563 SFL-QWIKD 570
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 366 IPSCLGNLTNLESLDLSNNK 385
+P NLTNLE LDLS+NK
Sbjct: 141 LPEYFSNLTNLEHLDLSSNK 160
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 370 LGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFD 429
L NLT LE LD+S+NK S L +LT L ++N ++ + P G D S +
Sbjct: 169 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI-LTNLDELSLN 225
Query: 430 GN 431
GN
Sbjct: 226 GN 227
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 370 LGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFD 429
L NLT LE LD+S+NK S L +LT L ++N ++ + P G D S +
Sbjct: 172 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI-LTNLDELSLN 228
Query: 430 GN 431
GN
Sbjct: 229 GN 230
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 370 LGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFD 429
L NLT LE LD+S+NK S L +LT L ++N ++ + P G D S +
Sbjct: 169 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI-LTNLDELSLN 225
Query: 430 GN 431
GN
Sbjct: 226 GN 227
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 370 LGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFD 429
L NLT LE LD+S+NK S L +LT L ++N ++ + P G D S +
Sbjct: 173 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI-LTNLDELSLN 229
Query: 430 GN 431
GN
Sbjct: 230 GN 231
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 370 LGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFD 429
L NLT LE LD+S+NK S L +LT L ++N ++ + P G D S +
Sbjct: 169 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI-LTNLDELSLN 225
Query: 430 GN 431
GN
Sbjct: 226 GN 227
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 370 LGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFD 429
L NLT LE LD+S+NK S L +LT L ++N ++ + P G D S +
Sbjct: 168 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI-LTNLDELSLN 224
Query: 430 GN 431
GN
Sbjct: 225 GN 226
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 370 LGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFD 429
L NLT LE LD+S+NK S L +LT L ++N ++ + P G D S +
Sbjct: 168 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI-LTNLDELSLN 224
Query: 430 GN 431
GN
Sbjct: 225 GN 226
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 112 SCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKC 171
SCS +D RS VP I T Q LYL N + G +L +L+ +Y+
Sbjct: 18 SCSGTTVDCRS-KRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN 74
Query: 172 NFSGQITSSLRNLTELVVLDMAQN 195
+LT+L VLD+ N
Sbjct: 75 QLGALPVGVFDSLTQLTVLDLGTN 98
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 15/117 (12%)
Query: 87 VHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVP------HSIGNFTRLQ 140
H+ +++L+LN +N + +L DL+ + P ++ + L
Sbjct: 30 AHVNYVDLSLNSIAE-------LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLI 82
Query: 141 FLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSS--LRNLTELVVLDMAQN 195
L L +N F G+ L +LE + +++CN G + S + LT L +L + N
Sbjct: 83 ILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 86 LVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLG 145
L LE L +A N F + + P+I +L LDL C P + + + LQ L +
Sbjct: 444 LSSLEVLKMAGNSFQENFL-PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502
Query: 146 FNNFSGDLLGSIGNLRSLEAIYM 168
N G L SL+ I++
Sbjct: 503 SNQLKSVPDGIFDRLTSLQKIWL 525
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 15/117 (12%)
Query: 87 VHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVP------HSIGNFTRLQ 140
H+ +++L+LN +N + +L DL+ + P ++ + L
Sbjct: 30 AHVNYVDLSLNSIAE-------LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLI 82
Query: 141 FLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSS--LRNLTELVVLDMAQN 195
L L +N F G+ L +LE + +++CN G + S + LT L +L + N
Sbjct: 83 ILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Query: 141 FLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDM 192
+Y+ FSG L SLE + + KCN + T +L +L L+VL +
Sbjct: 140 LVYISHRAFSG--------LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,134,709
Number of Sequences: 62578
Number of extensions: 551749
Number of successful extensions: 1218
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1054
Number of HSP's gapped (non-prelim): 119
length of query: 517
length of database: 14,973,337
effective HSP length: 103
effective length of query: 414
effective length of database: 8,527,803
effective search space: 3530510442
effective search space used: 3530510442
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)