Query 036049
Match_columns 517
No_of_seqs 698 out of 4505
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 08:54:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036049.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036049hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.8E-45 8.3E-50 409.8 30.9 415 6-438 27-611 (968)
2 KOG4194 Membrane glycoprotein 100.0 1.1E-34 2.3E-39 280.5 7.0 353 61-439 78-457 (873)
3 PLN00113 leucine-rich repeat r 100.0 4.1E-31 9E-36 296.6 18.5 335 87-434 69-417 (968)
4 KOG4194 Membrane glycoprotein 100.0 1.7E-31 3.6E-36 258.5 5.8 342 62-432 53-403 (873)
5 KOG0444 Cytoskeletal regulator 100.0 3.2E-31 7E-36 258.3 -2.5 324 61-438 55-379 (1255)
6 KOG0444 Cytoskeletal regulator 100.0 1.2E-30 2.7E-35 254.2 -4.0 317 61-432 7-327 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 1.7E-30 3.7E-35 241.3 -7.0 348 62-434 138-541 (565)
8 KOG0618 Serine/threonine phosp 99.9 3E-27 6.5E-32 240.7 -0.9 352 62-434 46-489 (1081)
9 KOG0472 Leucine-rich repeat pr 99.9 1.4E-27 2.9E-32 222.0 -7.4 266 62-413 46-312 (565)
10 KOG4237 Extracellular matrix p 99.9 1.4E-24 3E-29 201.8 0.6 96 344-439 268-364 (498)
11 KOG0618 Serine/threonine phosp 99.9 2.2E-25 4.8E-30 227.2 -6.1 359 47-432 6-463 (1081)
12 PRK15387 E3 ubiquitin-protein 99.9 2E-22 4.3E-27 211.7 15.5 262 62-416 202-463 (788)
13 PRK15370 E3 ubiquitin-protein 99.9 2.6E-22 5.6E-27 212.2 15.9 314 5-411 60-428 (754)
14 PLN03210 Resistant to P. syrin 99.9 8.8E-21 1.9E-25 213.9 21.4 192 61-287 558-756 (1153)
15 PLN03210 Resistant to P. syrin 99.9 8.6E-21 1.9E-25 214.0 21.1 340 60-433 531-905 (1153)
16 PRK15387 E3 ubiquitin-protein 99.9 4.7E-21 1E-25 201.4 14.9 259 87-435 201-459 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 4.1E-21 8.8E-26 203.1 10.5 246 114-435 179-429 (754)
18 cd00116 LRR_RI Leucine-rich re 99.8 3.2E-20 7E-25 182.1 -0.9 131 65-198 2-150 (319)
19 cd00116 LRR_RI Leucine-rich re 99.8 1.8E-20 4E-25 183.9 -3.4 285 91-433 2-319 (319)
20 KOG4237 Extracellular matrix p 99.8 5.5E-20 1.2E-24 171.4 -0.6 316 60-408 66-498 (498)
21 KOG0617 Ras suppressor protein 99.7 2.9E-20 6.4E-25 154.0 -4.6 159 60-235 32-191 (264)
22 KOG0617 Ras suppressor protein 99.7 1.4E-19 3.1E-24 150.0 -3.0 163 82-272 28-191 (264)
23 PLN03150 hypothetical protein; 99.6 2.2E-16 4.7E-21 166.7 8.4 118 327-444 419-538 (623)
24 PLN03150 hypothetical protein; 99.6 8.7E-15 1.9E-19 154.6 12.9 149 5-173 369-527 (623)
25 KOG0532 Leucine-rich repeat (L 99.4 2.5E-15 5.4E-20 146.7 -5.6 108 84-198 72-179 (722)
26 KOG0532 Leucine-rich repeat (L 99.4 2.7E-14 5.8E-19 139.6 -2.5 131 114-271 76-206 (722)
27 COG4886 Leucine-rich repeat (L 99.4 8.7E-13 1.9E-17 133.3 6.9 85 328-416 211-295 (394)
28 COG4886 Leucine-rich repeat (L 99.3 2E-12 4.3E-17 130.7 7.7 199 117-393 97-296 (394)
29 KOG1259 Nischarin, modulator o 99.2 3E-12 6.5E-17 116.0 1.5 229 109-414 178-415 (490)
30 KOG1909 Ran GTPase-activating 99.2 9.9E-13 2.1E-17 121.8 -4.4 66 345-410 236-310 (382)
31 PF14580 LRR_9: Leucine-rich r 99.1 1.9E-11 4.2E-16 106.3 3.2 109 83-198 15-126 (175)
32 KOG3207 Beta-tubulin folding c 99.1 5.4E-12 1.2E-16 120.1 -1.1 210 60-284 120-332 (505)
33 KOG3207 Beta-tubulin folding c 99.1 1.6E-11 3.5E-16 116.9 1.6 212 134-413 118-341 (505)
34 PF14580 LRR_9: Leucine-rich r 99.1 2.3E-11 5E-16 105.8 1.9 80 114-198 20-101 (175)
35 KOG0531 Protein phosphatase 1, 99.1 2.6E-11 5.7E-16 122.8 1.5 244 114-415 73-322 (414)
36 KOG1259 Nischarin, modulator o 99.1 2.6E-11 5.7E-16 110.0 0.8 106 325-435 306-413 (490)
37 KOG4658 Apoptotic ATPase [Sign 99.0 2.3E-10 4.9E-15 123.9 6.3 129 61-196 523-653 (889)
38 KOG0531 Protein phosphatase 1, 99.0 4.9E-11 1.1E-15 120.8 0.9 243 62-391 73-322 (414)
39 PF13855 LRR_8: Leucine rich r 99.0 5E-10 1.1E-14 80.1 3.3 61 350-410 1-61 (61)
40 PF13855 LRR_8: Leucine rich r 98.9 8.7E-10 1.9E-14 78.9 3.9 60 114-173 2-61 (61)
41 KOG1909 Ran GTPase-activating 98.9 9.2E-11 2E-15 108.9 -3.9 193 60-267 29-255 (382)
42 KOG1859 Leucine-rich repeat pr 98.6 5.5E-10 1.2E-14 112.8 -7.2 106 325-436 186-294 (1096)
43 PF08263 LRRNT_2: Leucine rich 98.6 4.3E-08 9.4E-13 64.1 4.0 42 7-57 2-43 (43)
44 KOG4658 Apoptotic ATPase [Sign 98.6 4.4E-08 9.6E-13 106.4 5.3 131 85-228 521-653 (889)
45 KOG2982 Uncharacterized conser 98.5 2.4E-08 5.1E-13 91.1 -0.5 109 89-197 47-158 (418)
46 KOG1859 Leucine-rich repeat pr 98.5 6E-09 1.3E-13 105.5 -4.8 176 82-287 104-288 (1096)
47 KOG4579 Leucine-rich repeat (L 98.4 2.1E-08 4.5E-13 81.0 -3.0 107 63-174 29-136 (177)
48 COG5238 RNA1 Ran GTPase-activa 98.2 2E-07 4.4E-12 84.0 -1.3 42 133-174 88-133 (388)
49 KOG4579 Leucine-rich repeat (L 98.2 1.6E-07 3.4E-12 76.0 -2.0 106 88-198 28-136 (177)
50 KOG3665 ZYG-1-like serine/thre 98.2 6.2E-07 1.4E-11 95.1 1.4 146 114-274 123-271 (699)
51 KOG2982 Uncharacterized conser 98.1 4.7E-07 1E-11 82.8 -0.8 185 85-287 69-288 (418)
52 PRK15386 type III secretion pr 98.0 1.7E-05 3.6E-10 77.9 8.5 56 134-195 49-104 (426)
53 PF12799 LRR_4: Leucine Rich r 98.0 3.1E-06 6.7E-11 55.4 2.3 36 351-387 2-37 (44)
54 KOG2120 SCF ubiquitin ligase, 98.0 1.3E-07 2.7E-12 86.5 -5.8 179 162-408 186-373 (419)
55 PF12799 LRR_4: Leucine Rich r 98.0 5.4E-06 1.2E-10 54.3 3.4 36 138-174 2-37 (44)
56 KOG2120 SCF ubiquitin ligase, 98.0 1.1E-07 2.3E-12 86.9 -6.4 86 88-174 186-273 (419)
57 KOG1644 U2-associated snRNP A' 98.0 9.3E-06 2E-10 70.4 5.0 59 114-174 43-101 (233)
58 KOG1644 U2-associated snRNP A' 97.9 1.7E-05 3.6E-10 68.9 5.4 110 137-264 42-151 (233)
59 PRK15386 type III secretion pr 97.8 7E-05 1.5E-09 73.6 8.8 135 85-263 50-187 (426)
60 COG5238 RNA1 Ran GTPase-activa 97.7 6.3E-06 1.4E-10 74.6 0.0 69 346-414 210-288 (388)
61 KOG3665 ZYG-1-like serine/thre 97.5 3E-05 6.5E-10 82.5 1.4 143 86-232 121-265 (699)
62 KOG2739 Leucine-rich acidic nu 97.1 0.00018 3.9E-09 65.3 1.0 65 133-197 61-128 (260)
63 KOG2123 Uncharacterized conser 97.0 4.2E-05 9.1E-10 69.7 -3.8 100 86-191 18-123 (388)
64 PF13306 LRR_5: Leucine rich r 97.0 0.0029 6.2E-08 52.6 7.2 59 133-193 8-66 (129)
65 PF13306 LRR_5: Leucine rich r 96.9 0.0036 7.7E-08 52.0 7.6 100 62-170 13-112 (129)
66 KOG2739 Leucine-rich acidic nu 96.9 0.00044 9.5E-09 62.8 2.1 77 114-192 66-150 (260)
67 KOG2123 Uncharacterized conser 96.6 0.00016 3.5E-09 65.9 -3.4 57 138-198 20-76 (388)
68 KOG4341 F-box protein containi 96.4 0.00012 2.7E-09 70.4 -5.5 64 347-410 369-438 (483)
69 PF00560 LRR_1: Leucine Rich R 95.8 0.0046 9.9E-08 33.6 1.0 12 139-150 2-13 (22)
70 PF00560 LRR_1: Leucine Rich R 95.5 0.0054 1.2E-07 33.3 0.8 19 352-371 2-20 (22)
71 KOG4308 LRR-containing protein 95.2 0.00023 5.1E-09 72.5 -9.6 61 328-388 235-304 (478)
72 KOG4308 LRR-containing protein 94.9 0.00022 4.8E-09 72.7 -10.8 87 326-412 204-304 (478)
73 KOG4341 F-box protein containi 94.4 0.0049 1.1E-07 59.8 -2.3 86 61-147 138-226 (483)
74 KOG0473 Leucine-rich repeat pr 94.4 0.00096 2.1E-08 59.4 -6.6 57 114-172 66-122 (326)
75 PF13504 LRR_7: Leucine rich r 92.8 0.073 1.6E-06 26.7 1.3 13 254-266 2-14 (17)
76 smart00369 LRR_TYP Leucine-ric 92.2 0.16 3.4E-06 28.7 2.4 22 86-109 1-22 (26)
77 smart00370 LRR Leucine-rich re 92.2 0.16 3.4E-06 28.7 2.4 22 86-109 1-22 (26)
78 smart00370 LRR Leucine-rich re 92.1 0.14 3.1E-06 28.8 2.2 22 253-275 2-23 (26)
79 smart00369 LRR_TYP Leucine-ric 92.1 0.14 3.1E-06 28.8 2.2 22 253-275 2-23 (26)
80 KOG0473 Leucine-rich repeat pr 92.0 0.0078 1.7E-07 53.8 -4.6 63 134-198 39-101 (326)
81 PF13516 LRR_6: Leucine Rich r 88.2 0.11 2.4E-06 28.7 -0.5 13 138-150 3-15 (24)
82 KOG3864 Uncharacterized conser 87.8 0.064 1.4E-06 47.2 -2.4 35 62-98 102-136 (221)
83 KOG3864 Uncharacterized conser 85.6 0.071 1.5E-06 46.9 -3.3 80 328-407 103-185 (221)
84 KOG1947 Leucine rich repeat pr 83.5 0.49 1.1E-05 49.0 1.1 110 114-230 189-308 (482)
85 PF02439 Adeno_E3_CR2: Adenovi 83.2 1.5 3.3E-05 27.0 2.6 18 475-492 7-24 (38)
86 PF08374 Protocadherin: Protoc 79.4 1.9 4.1E-05 38.2 3.1 25 468-492 35-59 (221)
87 KOG1947 Leucine rich repeat pr 77.4 0.69 1.5E-05 47.8 -0.2 114 135-266 186-308 (482)
88 smart00365 LRR_SD22 Leucine-ri 77.4 1.8 4E-05 24.4 1.6 14 374-387 2-15 (26)
89 TIGR00864 PCC polycystin catio 74.8 1.3 2.9E-05 53.8 1.1 35 380-414 1-35 (2740)
90 smart00364 LRR_BAC Leucine-ric 74.4 2.1 4.5E-05 24.2 1.3 13 375-387 3-15 (26)
91 KOG4242 Predicted myosin-I-bin 70.5 26 0.00057 35.4 8.6 17 254-270 355-371 (553)
92 PF02009 Rifin_STEVOR: Rifin/s 70.0 7 0.00015 37.3 4.5 21 472-492 258-278 (299)
93 PF15050 SCIMP: SCIMP protein 67.7 6.8 0.00015 31.1 3.2 11 495-505 31-41 (133)
94 smart00368 LRR_RI Leucine rich 67.3 4.1 8.8E-05 23.4 1.5 14 374-387 2-15 (28)
95 PF06305 DUF1049: Protein of u 65.7 23 0.00049 25.2 5.6 13 478-490 26-38 (68)
96 KOG3763 mRNA export factor TAP 63.4 3.5 7.6E-05 42.2 1.2 63 349-413 217-285 (585)
97 KOG3763 mRNA export factor TAP 62.8 4.8 0.0001 41.2 2.0 61 114-174 219-283 (585)
98 PF05399 EVI2A: Ectropic viral 61.1 56 0.0012 29.1 7.9 7 469-475 127-133 (227)
99 PF04995 CcmD: Heme exporter p 60.5 28 0.00061 22.7 4.7 15 470-484 5-19 (46)
100 PF01102 Glycophorin_A: Glycop 60.2 12 0.00027 30.3 3.6 16 474-489 67-82 (122)
101 PF01102 Glycophorin_A: Glycop 58.1 12 0.00026 30.4 3.1 18 476-493 65-82 (122)
102 PF07204 Orthoreo_P10: Orthore 53.5 18 0.00038 27.5 3.1 28 468-497 41-68 (98)
103 PF06305 DUF1049: Protein of u 53.0 52 0.0011 23.3 5.6 23 469-491 21-43 (68)
104 PF02009 Rifin_STEVOR: Rifin/s 49.0 28 0.0006 33.4 4.6 23 477-499 259-281 (299)
105 PF11770 GAPT: GRB2-binding ad 47.4 6.5 0.00014 32.6 0.1 19 474-492 12-30 (158)
106 PF15069 FAM163: FAM163 family 46.9 19 0.00041 29.9 2.6 33 472-504 7-39 (143)
107 COG3216 Uncharacterized protei 45.4 49 0.0011 28.6 4.9 34 469-502 135-168 (184)
108 PRK00523 hypothetical protein; 42.3 67 0.0015 23.3 4.5 9 495-503 27-35 (72)
109 PF04478 Mid2: Mid2 like cell 40.5 12 0.00026 31.4 0.7 8 473-480 51-58 (154)
110 PRK09459 pspG phage shock prot 40.4 47 0.001 24.2 3.5 17 494-510 56-72 (76)
111 PRK01844 hypothetical protein; 38.9 82 0.0018 22.8 4.5 10 495-504 26-35 (72)
112 TIGR01477 RIFIN variant surfac 38.7 36 0.00078 33.1 3.6 13 472-484 312-324 (353)
113 TIGR00864 PCC polycystin catio 38.4 19 0.00041 44.5 2.1 32 356-387 1-32 (2740)
114 TIGR00985 3a0801s04tom mitocho 38.3 50 0.0011 27.9 4.0 17 476-492 11-27 (148)
115 PTZ00046 rifin; Provisional 37.2 39 0.00085 33.0 3.6 9 474-482 319-327 (358)
116 PF03302 VSP: Giardia variant- 36.8 16 0.00036 36.7 1.1 24 468-491 366-389 (397)
117 PTZ00370 STEVOR; Provisional 36.8 44 0.00096 31.4 3.7 7 496-502 276-282 (296)
118 PF15179 Myc_target_1: Myc tar 35.2 20 0.00043 31.0 1.1 18 473-490 22-39 (197)
119 PF04689 S1FA: DNA binding pro 34.4 23 0.00051 24.6 1.2 24 469-492 13-36 (69)
120 TIGR03141 cytochro_ccmD heme e 33.3 1.4E+02 0.003 19.4 4.7 14 469-482 5-18 (45)
121 smart00367 LRR_CC Leucine-rich 31.0 33 0.00072 19.0 1.3 11 350-360 2-12 (26)
122 PRK11677 hypothetical protein; 30.0 1E+02 0.0022 25.6 4.5 15 478-492 8-22 (134)
123 PF15122 TMEM206: TMEM206 prot 28.3 1.3E+02 0.0029 27.4 5.2 37 474-510 255-291 (298)
124 PF04971 Lysis_S: Lysis protei 27.8 1.1E+02 0.0023 21.9 3.6 10 495-504 51-60 (68)
125 PF04971 Lysis_S: Lysis protei 27.7 98 0.0021 22.1 3.4 26 470-495 32-57 (68)
126 PRK11677 hypothetical protein; 27.4 46 0.00099 27.6 2.0 24 469-492 3-26 (134)
127 PF15179 Myc_target_1: Myc tar 27.3 60 0.0013 28.2 2.7 23 469-491 22-44 (197)
128 PTZ00382 Variant-specific surf 27.2 7.9 0.00017 30.1 -2.3 18 475-492 72-89 (96)
129 PF06667 PspB: Phage shock pro 26.1 89 0.0019 23.0 3.1 17 480-496 13-29 (75)
130 COG3105 Uncharacterized protei 25.1 55 0.0012 26.6 2.0 18 476-493 11-28 (138)
131 COG3105 Uncharacterized protei 24.4 1.6E+02 0.0035 24.0 4.5 23 468-490 7-29 (138)
132 PF06072 Herpes_US9: Alphaherp 22.4 79 0.0017 21.8 2.1 14 499-512 15-28 (60)
133 PF10577 UPF0560: Uncharacteri 21.9 55 0.0012 35.5 1.9 23 468-490 270-292 (807)
134 smart00082 LRRCT Leucine rich 21.8 46 0.00099 21.8 0.9 9 431-439 1-9 (51)
135 PF15145 DUF4577: Domain of un 21.7 1.7E+02 0.0038 23.1 4.0 24 469-492 62-85 (128)
136 PF10762 DUF2583: Protein of u 21.6 1.3E+02 0.0029 22.4 3.2 13 494-506 71-83 (89)
137 PF11980 DUF3481: Domain of un 21.2 86 0.0019 23.4 2.2 19 468-486 15-33 (87)
138 PF01708 Gemini_mov: Geminivir 21.1 45 0.00097 25.2 0.8 17 496-512 56-72 (91)
139 PF10661 EssA: WXG100 protein 21.1 1.1E+02 0.0025 25.7 3.3 13 485-497 132-144 (145)
140 PF03229 Alpha_GJ: Alphavirus 20.7 2E+02 0.0043 23.0 4.2 48 465-512 73-120 (126)
141 PF06295 DUF1043: Protein of u 20.6 1.6E+02 0.0035 24.2 4.0 13 479-491 5-17 (128)
142 PF12877 DUF3827: Domain of un 20.4 68 0.0015 33.8 2.1 17 469-485 268-284 (684)
143 COG3898 Uncharacterized membra 20.1 1.9E+02 0.0041 28.9 4.8 10 488-497 55-64 (531)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.8e-45 Score=409.78 Aligned_cols=415 Identities=31% Similarity=0.511 Sum_probs=259.1
Q ss_pred chHhHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCCCCCCCCcccceeecCCCCCcEEEEEcCCCCceeeeCCCccccc
Q 036049 6 HDDERSALLQFKESRISGDFYAWKFDCRPTMASWKPEEGNVDCCSWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYK 85 (517)
Q Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~C~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~ 85 (517)
+++|+.||++||+++.++. ..+.+|+. ..+||.|.|++|.. .++|+.|+|++|.+++..+. .+..
T Consensus 27 ~~~~~~~l~~~~~~~~~~~---------~~~~~w~~---~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~--~~~~ 91 (968)
T PLN00113 27 HAEELELLLSFKSSINDPL---------KYLSNWNS---SADVCLWQGITCNN-SSRVVSIDLSGKNISGKISS--AIFR 91 (968)
T ss_pred CHHHHHHHHHHHHhCCCCc---------ccCCCCCC---CCCCCcCcceecCC-CCcEEEEEecCCCccccCCh--HHhC
Confidence 5689999999999986543 25789976 57899999999975 36899999999988877765 7777
Q ss_pred CCCCCEEEcCCCCCCCCCCchhhh-hcccCCcEEEccCCCC----------------------cccCCccCCCCCCCcEE
Q 036049 86 LVHLEWLNLALNDFNSSEIQPEII-NLSCSLKLLDLRSCGF----------------------WGKVPHSIGNFTRLQFL 142 (517)
Q Consensus 86 l~~L~~L~Ls~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~l----------------------~~~~p~~~~~l~~L~~L 142 (517)
+++|++|+|++|++.+. +|..++ .+. +|++|+|++|.+ .+.+|..++++++|++|
T Consensus 92 l~~L~~L~Ls~n~~~~~-ip~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 169 (968)
T PLN00113 92 LPYIQTINLSNNQLSGP-IPDDIFTTSS-SLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVL 169 (968)
T ss_pred CCCCCEEECCCCccCCc-CChHHhccCC-CCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEE
Confidence 77777777777777653 555554 222 444444443333 23344444555555555
Q ss_pred EccCCcccccccccccCCccccEEEccc------------------------ccccccCchhhhcCCcccccccccccCc
Q 036049 143 YLGFNNFSGDLLGSIGNLRSLEAIYMSK------------------------CNFSGQITSSLRNLTELVVLDMAQNSYG 198 (517)
Q Consensus 143 ~Ls~n~i~~~~p~~~~~l~~L~~L~L~~------------------------n~l~~~~p~~l~~l~~L~~L~l~~N~l~ 198 (517)
++++|.+.+.+|..|+++++|++|++++ |.+++.+|..+.++++|++|++++|.+.
T Consensus 170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 249 (968)
T PLN00113 170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249 (968)
T ss_pred ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec
Confidence 5555554444444444444444444444 4444444444444444444444444433
Q ss_pred cee------------------cccccccccccc----------------------ccCCCCCeEeccCCcc---------
Q 036049 199 GTM------------------EIEGKVHKWLLD----------------------PNMQNLNALNLSHNLL--------- 229 (517)
Q Consensus 199 ~~~------------------~~~~~~~~~~~~----------------------~~l~~L~~L~Ls~n~l--------- 229 (517)
+.. .+.+.+|..+.. ..+++|++|++++|.+
T Consensus 250 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 329 (968)
T PLN00113 250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT 329 (968)
T ss_pred cccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh
Confidence 211 011112222211 0022222222222222
Q ss_pred ---------------cccCCCC-----CC-------------CC---------------CC---CCCCCCCCCCCcccEE
Q 036049 230 ---------------TGFDQHL-----VL-------------LP---------------GN---NEEPRTGCGFSKLRII 258 (517)
Q Consensus 230 ---------------~~~~~~~-----~l-------------l~---------------~~---~~~~~~~~~l~~L~~L 258 (517)
++..+.. .+ ++ ++ ...+..+..+++|+.|
T Consensus 330 ~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L 409 (968)
T PLN00113 330 SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRV 409 (968)
T ss_pred cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEE
Confidence 2111100 00 00 10 1223345667788888
Q ss_pred EccCCcCCCCCChhhhhcccccceeccCcccccccccCC-------------Ccccc-----hhhhccceeee-----ec
Q 036049 259 DLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSP-------------SGKLL-----MTTYDYLLTMN-----IK 315 (517)
Q Consensus 259 ~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~-------------~~~~~-----~~~~~~~~~~~-----~~ 315 (517)
++++|++++.+|. .+..++.|+.++++++......... .+... ......+..+. +.
T Consensus 410 ~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~ 488 (968)
T PLN00113 410 RLQDNSFSGELPS-EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFS 488 (968)
T ss_pred ECcCCEeeeECCh-hHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccC
Confidence 8888888776664 3667777777777664322110000 00000 00001111111 12
Q ss_pred CccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccc
Q 036049 316 GRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLV 395 (517)
Q Consensus 316 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 395 (517)
+..+......+.|+.|++++|.+.+.+|..+..+++|+.|+|++|.+++.+|..|..+++|+.|+|++|++++.+|..+.
T Consensus 489 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 568 (968)
T PLN00113 489 GAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG 568 (968)
T ss_pred CccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHh
Confidence 22222233466788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCEEeccCCcccccCCCCCcCCccCCCcccCCCCCCCCC
Q 036049 396 ELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKP 438 (517)
Q Consensus 396 ~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~Np~~c~~~ 438 (517)
.+++|+.|++++|++++.+|...++.++...++.|||.+|+.+
T Consensus 569 ~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 569 NVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred cCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 9999999999999999999999899999999999999999754
No 2
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-34 Score=280.51 Aligned_cols=353 Identities=19% Similarity=0.206 Sum_probs=220.3
Q ss_pred CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCc
Q 036049 61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQ 140 (517)
Q Consensus 61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 140 (517)
...+.||+++|.+...... .|.++++|+.+++.+|.++. +|....... +|+.|+|.+|.|+..-.+.+..++.|+
T Consensus 78 ~~t~~LdlsnNkl~~id~~--~f~nl~nLq~v~l~~N~Lt~--IP~f~~~sg-hl~~L~L~~N~I~sv~se~L~~l~alr 152 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFE--FFYNLPNLQEVNLNKNELTR--IPRFGHESG-HLEKLDLRHNLISSVTSEELSALPALR 152 (873)
T ss_pred cceeeeeccccccccCcHH--HHhcCCcceeeeeccchhhh--ccccccccc-ceeEEeeeccccccccHHHHHhHhhhh
Confidence 4678899999999877665 78889988888888888876 564433333 566666666666554445555555555
Q ss_pred EEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCC
Q 036049 141 FLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLN 220 (517)
Q Consensus 141 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~ 220 (517)
.||||.|.|+...-.+|..-.++++|+|++|+|+......|.++.+|.+|.|+.|+++ .+|...++ ++++|+
T Consensus 153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-------tLp~r~Fk-~L~~L~ 224 (873)
T KOG4194|consen 153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-------TLPQRSFK-RLPKLE 224 (873)
T ss_pred hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-------ccCHHHhh-hcchhh
Confidence 5555555555433334444445555555555555444445555555555555555554 34433333 244555
Q ss_pred eEeccCCcc------------------------cccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhc
Q 036049 221 ALNLSHNLL------------------------TGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLC 276 (517)
Q Consensus 221 ~L~Ls~n~l------------------------~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 276 (517)
.|+|..|+| ..+... .|..+.++++|+|+.|++. .+...++-+
T Consensus 225 ~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG------------~Fy~l~kme~l~L~~N~l~-~vn~g~lfg 291 (873)
T KOG4194|consen 225 SLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDG------------AFYGLEKMEHLNLETNRLQ-AVNEGWLFG 291 (873)
T ss_pred hhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCc------------ceeeecccceeecccchhh-hhhcccccc
Confidence 555555544 433322 3445556666666666665 444455555
Q ss_pred ccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEe
Q 036049 277 WNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLN 356 (517)
Q Consensus 277 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 356 (517)
++.|+.|+++++..-.................+....+.......+..+..|++|.|++|.+...-...|..+++|++||
T Consensus 292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~Ld 371 (873)
T KOG4194|consen 292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLD 371 (873)
T ss_pred cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhc
Confidence 66666666655322111111110000111112222233333334444577788888888888866666788889999999
Q ss_pred CcCccccccCCh---hccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCCCCCcCCccCCCcccCCCC
Q 036049 357 LHNNNLQGHIPS---CLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSG 433 (517)
Q Consensus 357 Ls~N~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~Np~ 433 (517)
|++|.|++.+.+ .|.+|++|+.|+|.+|+|....-..|..++.|++|||.+|.|...-|+...-..+..+-+..-.+
T Consensus 372 Lr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 372 LRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSF 451 (873)
T ss_pred CcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccce
Confidence 999998866654 47789999999999999986666789999999999999999998888764444777777888889
Q ss_pred CCCCCC
Q 036049 434 LCGKPL 439 (517)
Q Consensus 434 ~c~~~~ 439 (517)
+|||.+
T Consensus 452 lCDCql 457 (873)
T KOG4194|consen 452 LCDCQL 457 (873)
T ss_pred EEeccH
Confidence 999976
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=4.1e-31 Score=296.59 Aligned_cols=335 Identities=27% Similarity=0.371 Sum_probs=218.7
Q ss_pred CCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCC-CCCCCcEEEccCCcccccccccccCCccccE
Q 036049 87 VHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIG-NFTRLQFLYLGFNNFSGDLLGSIGNLRSLEA 165 (517)
Q Consensus 87 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~ 165 (517)
.+++.|+|++|.+.+. +++.+..+. +|++|+|++|.+.+.+|..+. .+++|++|+|++|.+++.+|. +.+++|++
T Consensus 69 ~~v~~L~L~~~~i~~~-~~~~~~~l~-~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~ 144 (968)
T PLN00113 69 SRVVSIDLSGKNISGK-ISSAIFRLP-YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLET 144 (968)
T ss_pred CcEEEEEecCCCcccc-CChHHhCCC-CCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCE
Confidence 4789999999999886 677777777 999999999999888887654 889999999999988876664 45778888
Q ss_pred EEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCC-----C--
Q 036049 166 IYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLV-----L-- 238 (517)
Q Consensus 166 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----l-- 238 (517)
|+|++|.+++.+|..++++++|++|++++|.+.+ .+|..+.. +++|++|++++|.+++..+... +
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~------~~p~~~~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG------KIPNSLTN--LTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccc------cCChhhhh--CcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 8888888877778888888888888888887763 56666665 7777777777777765433210 0
Q ss_pred --CCCC---CCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeee
Q 036049 239 --LPGN---NEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMN 313 (517)
Q Consensus 239 --l~~~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 313 (517)
+.++ ...+..+.++++|++|++++|.+++.+|. .+..+++|+.|+++.+....................+....
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccCh-hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 0000 01122234555555555555555544443 24555555555555432211100000000000001111111
Q ss_pred ecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccc
Q 036049 314 IKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQ 393 (517)
Q Consensus 314 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 393 (517)
+.+..+......++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..++.+++|+.|++++|++++.+|..
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence 22222222233556777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cccCCCCCEEeccCCcccccCCCC-CcCCccCCCcccCCCCC
Q 036049 394 LVELTFLAFFNVSDNYLTGLIPQG-KQFATFDNTSFDGNSGL 434 (517)
Q Consensus 394 l~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~Np~~ 434 (517)
+..+++|+.|++++|++++.+|.. ..+..++.+++.+|...
T Consensus 376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~ 417 (968)
T PLN00113 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417 (968)
T ss_pred HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEee
Confidence 777777888888888777777653 34567777778877543
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=1.7e-31 Score=258.51 Aligned_cols=342 Identities=20% Similarity=0.169 Sum_probs=224.7
Q ss_pred cEEEEEcCCCCceeeeCCCccccc--CCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCC
Q 036049 62 HVVKLNLSHSCLFGSINSSSSLYK--LVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRL 139 (517)
Q Consensus 62 ~l~~L~Ls~n~l~~~~~~~~~l~~--l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 139 (517)
..+.||.+.+.+...... .+.. .+.-+.||+++|++... -+..+.++. +|+++++.+|.+ ..+|...+...+|
T Consensus 53 ~~~lldcs~~~lea~~~~--~l~g~lp~~t~~LdlsnNkl~~i-d~~~f~nl~-nLq~v~l~~N~L-t~IP~f~~~sghl 127 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKS--RLKGFLPSQTQTLDLSNNKLSHI-DFEFFYNLP-NLQEVNLNKNEL-TRIPRFGHESGHL 127 (873)
T ss_pred CceeeecCcccccccccc--ccCCcCccceeeeeccccccccC-cHHHHhcCC-cceeeeeccchh-hhcccccccccce
Confidence 456677777777543211 2222 22456799999999874 344555666 999999999999 6789876777789
Q ss_pred cEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCC
Q 036049 140 QFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNL 219 (517)
Q Consensus 140 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L 219 (517)
+.|+|.+|.|+..-.++++.++.|+.|||+.|.|+...-..|..-.++++|+|++|.|+ .+....+. .+.+|
T Consensus 128 ~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It-------~l~~~~F~-~lnsL 199 (873)
T KOG4194|consen 128 EKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRIT-------TLETGHFD-SLNSL 199 (873)
T ss_pred eEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccc-------cccccccc-ccchh
Confidence 99999999999888889999999999999999999666677877789999999999998 33333332 27899
Q ss_pred CeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCccc--ccccccC-
Q 036049 220 NALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELR--YLQDVLS- 296 (517)
Q Consensus 220 ~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~--~l~~~~~- 296 (517)
.+|.|+.|+++.+++. .|..+++|+.|+|..|+|. .+....|..+++|+.+.+..+. .+++...
T Consensus 200 ~tlkLsrNrittLp~r------------~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy 266 (873)
T KOG4194|consen 200 LTLKLSRNRITTLPQR------------SFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFY 266 (873)
T ss_pred eeeecccCcccccCHH------------Hhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCccee
Confidence 9999999999998765 3566777777777777775 4444456667777766655422 2221111
Q ss_pred CCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCC
Q 036049 297 PSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNL 376 (517)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 376 (517)
+..+. ....+....+......+.-.+..|+.|++|.|.|...-+..++..++|++|+|++|+|+...+..|..+..|
T Consensus 267 ~l~km---e~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L 343 (873)
T KOG4194|consen 267 GLEKM---EHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL 343 (873)
T ss_pred eeccc---ceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh
Confidence 00000 000011111111111112225567777777777776666666666777777777777775556666666666
Q ss_pred CeeeCCCCcccccCccccccCCCCCEEeccCCcccccCCCC----CcCCccCCCcccCCC
Q 036049 377 ESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQG----KQFATFDNTSFDGNS 432 (517)
Q Consensus 377 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~----~~~~~l~~~~~~~Np 432 (517)
++|+|++|+|...-...|..+.+|++|||++|.|+..+.+. ..++.++.+.+.||.
T Consensus 344 e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq 403 (873)
T KOG4194|consen 344 EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ 403 (873)
T ss_pred hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce
Confidence 66666666666544455666666666666666666665543 234444455555554
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=3.2e-31 Score=258.27 Aligned_cols=324 Identities=23% Similarity=0.302 Sum_probs=268.1
Q ss_pred CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCc
Q 036049 61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQ 140 (517)
Q Consensus 61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 140 (517)
.++++|.+++|++..... .+..++.|+.+++..|++....+|+.++.+. .|+.||||+|++ ...|..+..-+++-
T Consensus 55 qkLEHLs~~HN~L~~vhG---ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~-dLt~lDLShNqL-~EvP~~LE~AKn~i 129 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISVHG---ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLK-DLTILDLSHNQL-REVPTNLEYAKNSI 129 (1255)
T ss_pred hhhhhhhhhhhhhHhhhh---hhccchhhHHHhhhccccccCCCCchhcccc-cceeeecchhhh-hhcchhhhhhcCcE
Confidence 478899999999975543 6788999999999999998878999999999 999999999999 78999999999999
Q ss_pred EEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCC
Q 036049 141 FLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLN 220 (517)
Q Consensus 141 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~ 220 (517)
.|+||+|+|..+...-|.++..|-+|||++|++. .+|+.+..+..|++|+|++|.+... .+ ..+|+ +++|+
T Consensus 130 VLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hf-QL-rQLPs------mtsL~ 200 (1255)
T KOG0444|consen 130 VLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHF-QL-RQLPS------MTSLS 200 (1255)
T ss_pred EEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHH-HH-hcCcc------chhhh
Confidence 9999999999544445779999999999999998 7888899999999999999987510 00 13443 88999
Q ss_pred eEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcc
Q 036049 221 ALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGK 300 (517)
Q Consensus 221 ~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 300 (517)
+|.+++.+-+-. ..|.++..+.+|+.+|+|.|.+. .+|+ ..-.+.+|+.|+++.+........
T Consensus 201 vLhms~TqRTl~-----------N~Ptsld~l~NL~dvDlS~N~Lp-~vPe-cly~l~~LrrLNLS~N~iteL~~~---- 263 (1255)
T KOG0444|consen 201 VLHMSNTQRTLD-----------NIPTSLDDLHNLRDVDLSENNLP-IVPE-CLYKLRNLRRLNLSGNKITELNMT---- 263 (1255)
T ss_pred hhhcccccchhh-----------cCCCchhhhhhhhhccccccCCC-cchH-HHhhhhhhheeccCcCceeeeecc----
Confidence 999998764422 11334577899999999999998 7775 466788999999888443321110
Q ss_pred cchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCcccc-ccCChhccCCCCCCee
Q 036049 301 LLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQ-GHIPSCLGNLTNLESL 379 (517)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L 379 (517)
...-..+++|++|.|+++ .+|..+..++.|+.|++.+|+++ .-+|+.++.+.+|+.+
T Consensus 264 ---------------------~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf 321 (1255)
T KOG0444|consen 264 ---------------------EGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVF 321 (1255)
T ss_pred ---------------------HHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHH
Confidence 011457899999999999 88999999999999999999886 4589999999999999
Q ss_pred eCCCCcccccCccccccCCCCCEEeccCCcccccCCCCCcCCccCCCcccCCCCCCCCC
Q 036049 380 DLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKP 438 (517)
Q Consensus 380 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~Np~~c~~~ 438 (517)
...+|.+. ..|+.++.+..|+.|.|+.|++.+.+.....+..+..+++..||.+.-+|
T Consensus 322 ~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 322 HAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred Hhhccccc-cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 99999998 89999999999999999999998776666788889999999999876443
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=1.2e-30 Score=254.22 Aligned_cols=317 Identities=20% Similarity=0.315 Sum_probs=254.9
Q ss_pred CcEEEEEcCCCCce-eeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCC
Q 036049 61 GHVVKLNLSHSCLF-GSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRL 139 (517)
Q Consensus 61 ~~l~~L~Ls~n~l~-~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 139 (517)
+-|+.+|+++|.++ +.+|. ....++.++.|.|...++.. +|..+..+. +|++|.+++|++ ..+-..+..++.|
T Consensus 7 pFVrGvDfsgNDFsg~~FP~--~v~qMt~~~WLkLnrt~L~~--vPeEL~~lq-kLEHLs~~HN~L-~~vhGELs~Lp~L 80 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPH--DVEQMTQMTWLKLNRTKLEQ--VPEELSRLQ-KLEHLSMAHNQL-ISVHGELSDLPRL 80 (1255)
T ss_pred ceeecccccCCcCCCCcCch--hHHHhhheeEEEechhhhhh--ChHHHHHHh-hhhhhhhhhhhh-Hhhhhhhccchhh
Confidence 45888999999998 46666 88899999999999999977 899999999 999999999998 4566678899999
Q ss_pred cEEEccCCcccc-cccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCC
Q 036049 140 QFLYLGFNNFSG-DLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQN 218 (517)
Q Consensus 140 ~~L~Ls~n~i~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~ 218 (517)
+.+++..|++.. -+|..+-.|..|+.|||++|++. ..|..+..-+++-+|+|++|+|. .||..++. +++.
T Consensus 81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-------tIPn~lfi-nLtD 151 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-------TIPNSLFI-NLTD 151 (1255)
T ss_pred HHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-------cCCchHHH-hhHh
Confidence 999999998863 46778889999999999999999 78999999999999999999997 78877765 4888
Q ss_pred CCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCC
Q 036049 219 LNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPS 298 (517)
Q Consensus 219 L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 298 (517)
|-+||||+|++..++|.. ..+.+|++|+|++|.+. ..--..+..+++|+.|.+++.+.....++.
T Consensus 152 LLfLDLS~NrLe~LPPQ~-------------RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt- 216 (1255)
T KOG0444|consen 152 LLFLDLSNNRLEMLPPQI-------------RRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDNIPT- 216 (1255)
T ss_pred HhhhccccchhhhcCHHH-------------HHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccchhhcCCC-
Confidence 999999999999987764 67889999999999876 322222334555666666653222211111
Q ss_pred cccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCe
Q 036049 299 GKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLES 378 (517)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 378 (517)
....+.+|..+|+|.|++. .+|+.+-.+++|+.|+||+|+|+ .+.-..+.-.+|++
T Consensus 217 ----------------------sld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEt 272 (1255)
T KOG0444|consen 217 ----------------------SLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLET 272 (1255)
T ss_pred ----------------------chhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhh
Confidence 1122677889999999998 78999999999999999999998 55556667788999
Q ss_pred eeCCCCcccccCccccccCCCCCEEeccCCccc--ccCCCCCcCCccCCCcccCCC
Q 036049 379 LDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLT--GLIPQGKQFATFDNTSFDGNS 432 (517)
Q Consensus 379 L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~--~~~p~~~~~~~l~~~~~~~Np 432 (517)
|+||.|+++ .+|..++.+++|+.|++.+|+++ |++...+.+..++.+...+|.
T Consensus 273 LNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~ 327 (1255)
T KOG0444|consen 273 LNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK 327 (1255)
T ss_pred hccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc
Confidence 999999998 88999999999999999999876 444444666677776666664
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.95 E-value=1.7e-30 Score=241.28 Aligned_cols=348 Identities=23% Similarity=0.312 Sum_probs=241.7
Q ss_pred cEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcE
Q 036049 62 HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQF 141 (517)
Q Consensus 62 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 141 (517)
.+..++..+|+++. .|+ ++.++.+|..|++.+|++.. +|+....+. .|++||...|-+ +.+|..++.+.+|+.
T Consensus 138 ~l~dl~~~~N~i~s-lp~--~~~~~~~l~~l~~~~n~l~~--l~~~~i~m~-~L~~ld~~~N~L-~tlP~~lg~l~~L~~ 210 (565)
T KOG0472|consen 138 DLEDLDATNNQISS-LPE--DMVNLSKLSKLDLEGNKLKA--LPENHIAMK-RLKHLDCNSNLL-ETLPPELGGLESLEL 210 (565)
T ss_pred hhhhhhcccccccc-Cch--HHHHHHHHHHhhccccchhh--CCHHHHHHH-HHHhcccchhhh-hcCChhhcchhhhHH
Confidence 35667777777763 444 67778888888888888877 677777766 899999999888 788889999999999
Q ss_pred EEccCCcccccccccccCCccccEEEcccccccccCchh-hhcCCcccccccccccCcceeccccccccccccccCCCCC
Q 036049 142 LYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSS-LRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLN 220 (517)
Q Consensus 142 L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~ 220 (517)
|||..|+|. .+| .|..+..|++|+++.|+|. .+|.. ..++++|.+||+.+|+++ ++|..+.. +.+|+
T Consensus 211 LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-------e~Pde~cl--LrsL~ 278 (565)
T KOG0472|consen 211 LYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-------EVPDEICL--LRSLE 278 (565)
T ss_pred HHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-------cCchHHHH--hhhhh
Confidence 999999998 567 7999999999999999998 55554 448999999999999998 88998888 89999
Q ss_pred eEeccCCcccccCCCCCC--------------------CC-----------------------C--------CCCCCCCC
Q 036049 221 ALNLSHNLLTGFDQHLVL--------------------LP-----------------------G--------NNEEPRTG 249 (517)
Q Consensus 221 ~L~Ls~n~l~~~~~~~~l--------------------l~-----------------------~--------~~~~~~~~ 249 (517)
+||+|+|.|++++....- +. | ........
T Consensus 279 rLDlSNN~is~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~ 358 (565)
T KOG0472|consen 279 RLDLSNNDISSLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDI 358 (565)
T ss_pred hhcccCCccccCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccch
Confidence 999999999998765410 00 0 00001111
Q ss_pred CCCCcccEEEccCCcCCCCCChhhhhccc--ccceeccCcccccccccCCCcccchhhh--ccceeeeecCccccCCCch
Q 036049 250 CGFSKLRIIDLSDNRFTGKLPSKSFLCWN--AMKIVNASELRYLQDVLSPSGKLLMTTY--DYLLTMNIKGRMMAYNKIP 325 (517)
Q Consensus 250 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~--~L~~L~l~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 325 (517)
....+.+.|++++-+++ .+|.+.|..-. -...++++..+... . +.... ..... .........+..+......
T Consensus 359 ~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~e-l-Pk~L~-~lkelvT~l~lsnn~isfv~~~l~~l 434 (565)
T KOG0472|consen 359 YAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCE-L-PKRLV-ELKELVTDLVLSNNKISFVPLELSQL 434 (565)
T ss_pred hhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhh-h-hhhhH-HHHHHHHHHHhhcCccccchHHHHhh
Confidence 23345566666666665 56665554322 12233333311110 0 00000 00000 0001111222222333345
Q ss_pred hhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEec
Q 036049 326 DILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNV 405 (517)
Q Consensus 326 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 405 (517)
++|+.|+|++|-+. .+|..++.+..|+.||+|+|++. .+|..+..+..|+.+-.++|++....|+.+.++.+|..||+
T Consensus 435 ~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL 512 (565)
T KOG0472|consen 435 QKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDL 512 (565)
T ss_pred hcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceecc
Confidence 66777777777766 67777777777888888888777 77777777777777777778887666666899999999999
Q ss_pred cCCcccccCCCCCcCCccCCCcccCCCCC
Q 036049 406 SDNYLTGLIPQGKQFATFDNTSFDGNSGL 434 (517)
Q Consensus 406 ~~N~l~~~~p~~~~~~~l~~~~~~~Np~~ 434 (517)
.+|.+...+|..+....+..+.++|||+.
T Consensus 513 ~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 513 QNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred CCCchhhCChhhccccceeEEEecCCccC
Confidence 99999988888888999999999999975
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=3e-27 Score=240.66 Aligned_cols=352 Identities=24% Similarity=0.332 Sum_probs=195.4
Q ss_pred cEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcE
Q 036049 62 HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQF 141 (517)
Q Consensus 62 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 141 (517)
++++|||++|.+. ..|. .+..+.+|+.|+++.|.|.. .|..+..+. +|++|+|.+|.+ ...|.++..+++|++
T Consensus 46 ~L~~l~lsnn~~~-~fp~--~it~l~~L~~ln~s~n~i~~--vp~s~~~~~-~l~~lnL~~n~l-~~lP~~~~~lknl~~ 118 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPI--QITLLSHLRQLNLSRNYIRS--VPSSCSNMR-NLQYLNLKNNRL-QSLPASISELKNLQY 118 (1081)
T ss_pred eeEEeeccccccc-cCCc--hhhhHHHHhhcccchhhHhh--Cchhhhhhh-cchhheeccchh-hcCchhHHhhhcccc
Confidence 4788888888875 4444 66677777777777777766 566666666 777777777766 566777777777777
Q ss_pred EEccCCcccccccccccCC----------------------------------------ccccE-EEcccccccccCchh
Q 036049 142 LYLGFNNFSGDLLGSIGNL----------------------------------------RSLEA-IYMSKCNFSGQITSS 180 (517)
Q Consensus 142 L~Ls~n~i~~~~p~~~~~l----------------------------------------~~L~~-L~L~~n~l~~~~p~~ 180 (517)
|++++|++. .+|..+..+ ..|++ |+|.+|.+....-..
T Consensus 119 LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~ 197 (1081)
T KOG0618|consen 119 LDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSN 197 (1081)
T ss_pred cccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhh
Confidence 777777443 112111100 11222 444444433000000
Q ss_pred h---------------------------------------hcCCcccccccccccCcceeccccccccccccccCCCCCe
Q 036049 181 L---------------------------------------RNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNA 221 (517)
Q Consensus 181 l---------------------------------------~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~ 221 (517)
+ .--.+|+++++++|+++ .+|+|+.. +.+|+.
T Consensus 198 ~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-------~lp~wi~~--~~nle~ 268 (1081)
T KOG0618|consen 198 LANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-------NLPEWIGA--CANLEA 268 (1081)
T ss_pred ccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh-------cchHHHHh--cccceE
Confidence 0 01136888999999887 78888888 899999
Q ss_pred EeccCCcccccCCCCCCCC---------CC-CCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccc-cceeccCcccc
Q 036049 222 LNLSHNLLTGFDQHLVLLP---------GN-NEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNA-MKIVNASELRY 290 (517)
Q Consensus 222 L~Ls~n~l~~~~~~~~ll~---------~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~-L~~L~l~~~~~ 290 (517)
+++.+|.++.++....... .. ...+....++++|++|||..|++. .+|...+..... +..++.+.+..
T Consensus 269 l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l 347 (1081)
T KOG0618|consen 269 LNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKL 347 (1081)
T ss_pred ecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccc
Confidence 9999998876654331100 00 011223356788888888888886 777755544433 44444333111
Q ss_pred cccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhc
Q 036049 291 LQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCL 370 (517)
Q Consensus 291 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 370 (517)
-.....+..........++....+.............|+.|+|++|.+.......+.++..|++|+||+|+++ .+|+.+
T Consensus 348 ~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tv 426 (1081)
T KOG0618|consen 348 STLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTV 426 (1081)
T ss_pred cccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHH
Confidence 1000000000001111111111122222222222344444555555444322233444444555555555554 444445
Q ss_pred cCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCccccc-CCCCCcCCccCCCcccCCCCC
Q 036049 371 GNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGL-IPQGKQFATFDNTSFDGNSGL 434 (517)
Q Consensus 371 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~-~p~~~~~~~l~~~~~~~Np~~ 434 (517)
..++.|++|...+|++. ..| .+..++.|+.+|++.|+++.. +|.....++++.++++||+++
T Consensus 427 a~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 427 ANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred HhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 55555555555555554 455 677889999999999999844 444444588999999999974
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=1.4e-27 Score=222.05 Aligned_cols=266 Identities=30% Similarity=0.423 Sum_probs=213.9
Q ss_pred cEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcE
Q 036049 62 HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQF 141 (517)
Q Consensus 62 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 141 (517)
.+..+.+++|.++...+ .+.++..|.+|++++|++.. +|+.+..+. .++.|+.++|++ ..+|+.++.+.+|+.
T Consensus 46 ~l~~lils~N~l~~l~~---dl~nL~~l~vl~~~~n~l~~--lp~aig~l~-~l~~l~vs~n~l-s~lp~~i~s~~~l~~ 118 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLRE---DLKNLACLTVLNVHDNKLSQ--LPAAIGELE-ALKSLNVSHNKL-SELPEQIGSLISLVK 118 (565)
T ss_pred chhhhhhccCchhhccH---hhhcccceeEEEeccchhhh--CCHHHHHHH-HHHHhhcccchH-hhccHHHhhhhhhhh
Confidence 36788999999875443 67889999999999999987 899999998 999999999999 678889999999999
Q ss_pred EEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCe
Q 036049 142 LYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNA 221 (517)
Q Consensus 142 L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~ 221 (517)
|++++|.+. .+|++++.+..|+.|+..+|+++ ..|+.+..+.+|..+++.+|++. .+|+.... ++.|++
T Consensus 119 l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-------~l~~~~i~--m~~L~~ 187 (565)
T KOG0472|consen 119 LDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-------ALPENHIA--MKRLKH 187 (565)
T ss_pred hhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-------hCCHHHHH--HHHHHh
Confidence 999999998 78889999999999999999998 77888899999999999999987 67776666 888999
Q ss_pred EeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCccc
Q 036049 222 LNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKL 301 (517)
Q Consensus 222 L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 301 (517)
||...|.++.+++.. +.+.+|..|++..|++. .+|+ |.+
T Consensus 188 ld~~~N~L~tlP~~l-------------g~l~~L~~LyL~~Nki~-~lPe--f~g------------------------- 226 (565)
T KOG0472|consen 188 LDCNSNLLETLPPEL-------------GGLESLELLYLRRNKIR-FLPE--FPG------------------------- 226 (565)
T ss_pred cccchhhhhcCChhh-------------cchhhhHHHHhhhcccc-cCCC--CCc-------------------------
Confidence 999999888876653 77888888888888887 6663 222
Q ss_pred chhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCccccc-CCCCCCeEeCcCccccccCChhccCCCCCCeee
Q 036049 302 LMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASIS-NLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLD 380 (517)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 380 (517)
.+.|.++.++.|.+. .+|.+.. ++++|..|||..|+++ +.|+.+.-+++|+.||
T Consensus 227 -----------------------cs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLD 281 (565)
T KOG0472|consen 227 -----------------------CSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLD 281 (565)
T ss_pred -----------------------cHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhc
Confidence 345666667777766 4554444 6777777777777777 6777777777777777
Q ss_pred CCCCcccccCccccccCCCCCEEeccCCccccc
Q 036049 381 LSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGL 413 (517)
Q Consensus 381 Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 413 (517)
+|+|.|+ .+|.+++++ .|+.|-+.||++.+.
T Consensus 282 lSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTi 312 (565)
T KOG0472|consen 282 LSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTI 312 (565)
T ss_pred ccCCccc-cCCcccccc-eeeehhhcCCchHHH
Confidence 7777777 566677777 677777777777543
No 10
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=1.4e-24 Score=201.82 Aligned_cols=96 Identities=22% Similarity=0.262 Sum_probs=83.5
Q ss_pred ccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCCCC-CcCCc
Q 036049 344 ASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQG-KQFAT 422 (517)
Q Consensus 344 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~-~~~~~ 422 (517)
..|..+++|++|+|++|+|+++-+.+|..+..+++|.|..|+|...-...|.++..|+.|+|.+|+|+..-|.. .....
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~ 347 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS 347 (498)
T ss_pred HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence 45888999999999999999888889999999999999999998777778999999999999999999888754 34555
Q ss_pred cCCCcccCCCCCCCCCC
Q 036049 423 FDNTSFDGNSGLCGKPL 439 (517)
Q Consensus 423 l~~~~~~~Np~~c~~~~ 439 (517)
+..+.+-+|||.|+|.+
T Consensus 348 l~~l~l~~Np~~CnC~l 364 (498)
T KOG4237|consen 348 LSTLNLLSNPFNCNCRL 364 (498)
T ss_pred eeeeehccCcccCccch
Confidence 67778899999999866
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.89 E-value=2.2e-25 Score=227.17 Aligned_cols=359 Identities=24% Similarity=0.283 Sum_probs=241.3
Q ss_pred CCcccceeecC-CCCCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCC
Q 036049 47 DCCSWDGVHCN-KNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGF 125 (517)
Q Consensus 47 ~~C~w~gv~c~-~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l 125 (517)
.+|.-+-+.-. .....++.|+++.|.+-...-+ ...+.-+|+.||+++|.+.. +|..+..+. +|+.|+++.|-|
T Consensus 6 s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~--~~~~~v~L~~l~lsnn~~~~--fp~~it~l~-~L~~ln~s~n~i 80 (1081)
T KOG0618|consen 6 SDEQLELIPEQILNNEALQILNLRRNSLLSRPLE--FVEKRVKLKSLDLSNNQISS--FPIQITLLS-HLRQLNLSRNYI 80 (1081)
T ss_pred ccccCcccchhhccHHHHHhhhccccccccCchH--HhhheeeeEEeecccccccc--CCchhhhHH-HHhhcccchhhH
Confidence 34554444332 1123488899999877543222 45555569999999999987 888888888 999999999999
Q ss_pred cccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCccccccccccc-Cc--cee-
Q 036049 126 WGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNS-YG--GTM- 201 (517)
Q Consensus 126 ~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~-l~--~~~- 201 (517)
...|.+..++.+|++|.|.+|.+. .+|.++..+++|++|+++.|.+. .+|..+..++.++.+..++|. +. |..
T Consensus 81 -~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ 157 (1081)
T KOG0618|consen 81 -RSVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTS 157 (1081)
T ss_pred -hhCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcccc
Confidence 678889999999999999999999 79999999999999999999988 667666666665555555551 00 000
Q ss_pred ---------cccccccccccc-----------------------------------------------------------
Q 036049 202 ---------EIEGKVHKWLLD----------------------------------------------------------- 213 (517)
Q Consensus 202 ---------~~~~~~~~~~~~----------------------------------------------------------- 213 (517)
.+.+.++..+..
T Consensus 158 ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~ 237 (1081)
T KOG0618|consen 158 IKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH 237 (1081)
T ss_pred chhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc
Confidence 000111111100
Q ss_pred ccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhh------------------
Q 036049 214 PNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFL------------------ 275 (517)
Q Consensus 214 ~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------------------ 275 (517)
+.-.+|+++++++|++++++ ..+..+.+|+.++..+|+++ .+|...+.
T Consensus 238 p~p~nl~~~dis~n~l~~lp-------------~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip 303 (1081)
T KOG0618|consen 238 PVPLNLQYLDISHNNLSNLP-------------EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIP 303 (1081)
T ss_pred cccccceeeecchhhhhcch-------------HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCC
Confidence 00123333333333333332 34577889999999999886 66654332
Q ss_pred ----cccccceeccCcccc--cccccCCCcccchhhhc--cceeeeecCccccCCCchhhhhhhhCCCCCCcccCccccc
Q 036049 276 ----CWNAMKIVNASELRY--LQDVLSPSGKLLMTTYD--YLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASIS 347 (517)
Q Consensus 276 ----~l~~L~~L~l~~~~~--l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~ 347 (517)
.++.|+.|++..+.. ++..... ....... ......+......-......|+.|++.+|.+++..-+.+.
T Consensus 304 ~~le~~~sL~tLdL~~N~L~~lp~~~l~---v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~ 380 (1081)
T KOG0618|consen 304 PFLEGLKSLRTLDLQSNNLPSLPDNFLA---VLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV 380 (1081)
T ss_pred CcccccceeeeeeehhccccccchHHHh---hhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc
Confidence 123333333332111 1100000 0000000 0000111111111223467899999999999998777889
Q ss_pred CCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCCCCCcCCccCCCc
Q 036049 348 NLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTS 427 (517)
Q Consensus 348 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~ 427 (517)
++++|+.|+|++|++.......+.++..|++|+||+|+++ .+|+.+..++.|++|...+|+|... |+..+++.+..+|
T Consensus 381 ~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~f-Pe~~~l~qL~~lD 458 (1081)
T KOG0618|consen 381 NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSF-PELAQLPQLKVLD 458 (1081)
T ss_pred cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeec-hhhhhcCcceEEe
Confidence 9999999999999998444456889999999999999999 8889999999999999999999955 5878888888888
Q ss_pred ccCCC
Q 036049 428 FDGNS 432 (517)
Q Consensus 428 ~~~Np 432 (517)
++-|.
T Consensus 459 lS~N~ 463 (1081)
T KOG0618|consen 459 LSCNN 463 (1081)
T ss_pred cccch
Confidence 88774
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=2e-22 Score=211.72 Aligned_cols=262 Identities=22% Similarity=0.248 Sum_probs=199.2
Q ss_pred cEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcE
Q 036049 62 HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQF 141 (517)
Q Consensus 62 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 141 (517)
.-..|+++.+.++ .+|. .+. ++|+.|++++|+++. +|.. .++|++|++++|.++ .+|.. .++|+.
T Consensus 202 ~~~~LdLs~~~Lt-sLP~--~l~--~~L~~L~L~~N~Lt~--LP~l----p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~ 266 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPD--CLP--AHITTLVIPDNNLTS--LPAL----PPELRTLEVSGNQLT-SLPVL---PPGLLE 266 (788)
T ss_pred CCcEEEcCCCCCC-cCCc--chh--cCCCEEEccCCcCCC--CCCC----CCCCcEEEecCCccC-cccCc---ccccce
Confidence 3457899999998 4555 444 489999999999987 6642 349999999999995 56643 468999
Q ss_pred EEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCe
Q 036049 142 LYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNA 221 (517)
Q Consensus 142 L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~ 221 (517)
|++++|.++ .+|..+ .+|+.|++++|+++ .+|.. .++|+.|++++|+++ .+|.. ..+|+.
T Consensus 267 L~Ls~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~-------~Lp~l-----p~~L~~ 326 (788)
T PRK15387 267 LSIFSNPLT-HLPALP---SGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA-------SLPAL-----PSELCK 326 (788)
T ss_pred eeccCCchh-hhhhch---hhcCEEECcCCccc-ccccc---ccccceeECCCCccc-------cCCCC-----cccccc
Confidence 999999998 456533 57889999999998 45543 478999999999997 45442 346888
Q ss_pred EeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCccc
Q 036049 222 LNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKL 301 (517)
Q Consensus 222 L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 301 (517)
|++++|.+++++.. ..+|++|+|++|+++ .+|.. ..+|+.|+++++. +.
T Consensus 327 L~Ls~N~L~~LP~l----------------p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~-L~--------- 375 (788)
T PRK15387 327 LWAYNNQLTSLPTL----------------PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNR-LT--------- 375 (788)
T ss_pred cccccCcccccccc----------------ccccceEecCCCccC-CCCCC----Ccccceehhhccc-cc---------
Confidence 99999999876421 247999999999998 67642 2345555555421 11
Q ss_pred chhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeC
Q 036049 302 LMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDL 381 (517)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 381 (517)
.+...+..|+.|++++|.+++ +|.. .++|+.|++++|+++ .+|... .+|+.|++
T Consensus 376 ------------------~LP~l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~L 429 (788)
T PRK15387 376 ------------------SLPALPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSV 429 (788)
T ss_pred ------------------cCcccccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhh
Confidence 011124568999999999984 5543 367999999999998 567543 57889999
Q ss_pred CCCcccccCccccccCCCCCEEeccCCcccccCCC
Q 036049 382 SNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQ 416 (517)
Q Consensus 382 s~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~ 416 (517)
++|+|+ .+|..+..+++|+.|++++|+|++..|.
T Consensus 430 s~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 430 YRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred ccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 999998 7899999999999999999999988664
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.88 E-value=2.6e-22 Score=212.16 Aligned_cols=314 Identities=18% Similarity=0.216 Sum_probs=219.5
Q ss_pred CchHhHHHHHHHhhcCCCCCCcccccCCCCCCCC----CCCCCCCCCCcccce----------------eecCCCCCcEE
Q 036049 5 CHDDERSALLQFKESRISGDFYAWKFDCRPTMAS----WKPEEGNVDCCSWDG----------------VHCNKNTGHVV 64 (517)
Q Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----w~~~~~~~~~C~w~g----------------v~c~~~~~~l~ 64 (517)
-.++|...+.++.+.+..|. .+.+ |+. ++++|.-.. |.|.. +.|+
T Consensus 60 ~~~~~~~~~~~~~~~l~~p~----------~~~~~~~~~~~---~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~--~~vt 124 (754)
T PRK15370 60 ASPEEIKSKFECLRMLAFPA----------YADNIQYSRGG---ADQYCILSENSQEILSIVFNTEGYTVEGGG--KSVT 124 (754)
T ss_pred CCHHHHHHHHHHHHHhcCCc----------hhhccccccCC---CCcccccCCcchhhheeeecCCceEEecCC--Cccc
Confidence 45578889999999887765 4455 876 678997654 45532 4566
Q ss_pred EEEcCCCCceeeeCCC--------------------------ccc-----ccCCCCCEEEcCCCCCCCCCCchhhhhccc
Q 036049 65 KLNLSHSCLFGSINSS--------------------------SSL-----YKLVHLEWLNLALNDFNSSEIQPEIINLSC 113 (517)
Q Consensus 65 ~L~Ls~n~l~~~~~~~--------------------------~~l-----~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 113 (517)
.+..-+.......... .++ +-..+...|+++++.++. +|..+. +
T Consensus 125 ~l~~~g~~~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lts--LP~~Ip---~ 199 (754)
T PRK15370 125 YTRVTESEQASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLTT--IPACIP---E 199 (754)
T ss_pred ccccccccccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcCc--CCcccc---c
Confidence 6655443221100000 001 112357889999999887 776553 3
Q ss_pred CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccc
Q 036049 114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMA 193 (517)
Q Consensus 114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 193 (517)
.|+.|+|++|.+. .+|..+. .+|++|++++|+++ .+|..+. .+|+.|+|++|.+. .+|..+. ++|+.|+++
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLF 270 (754)
T ss_pred CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence 8999999999995 5676554 58999999999998 5676554 47999999999998 6676664 579999999
Q ss_pred cccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhh
Q 036049 194 QNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKS 273 (517)
Q Consensus 194 ~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 273 (517)
+|+++ .+|..+ .++|+.|++++|++++++... .++|+.|++++|.++ .+|...
T Consensus 271 ~N~L~-------~LP~~l----~~sL~~L~Ls~N~Lt~LP~~l---------------p~sL~~L~Ls~N~Lt-~LP~~l 323 (754)
T PRK15370 271 HNKIS-------CLPENL----PEELRYLSVYDNSIRTLPAHL---------------PSGITHLNVQSNSLT-ALPETL 323 (754)
T ss_pred CCccC-------cccccc----CCCCcEEECCCCccccCcccc---------------hhhHHHHHhcCCccc-cCCccc
Confidence 99887 556543 357999999999998764321 247899999999998 566543
Q ss_pred hhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCC
Q 036049 274 FLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQ 353 (517)
Q Consensus 274 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 353 (517)
. ++|+.|+++++.... .+. .++++|+.|++++|+++ .+|..+. ++|+
T Consensus 324 ~---~sL~~L~Ls~N~Lt~------------------------LP~---~l~~sL~~L~Ls~N~L~-~LP~~lp--~~L~ 370 (754)
T PRK15370 324 P---PGLKTLEAGENALTS------------------------LPA---SLPPELQVLDVSKNQIT-VLPETLP--PTIT 370 (754)
T ss_pred c---ccceeccccCCcccc------------------------CCh---hhcCcccEEECCCCCCC-cCChhhc--CCcC
Confidence 2 456666666532110 000 12457888999999887 4666553 6899
Q ss_pred eEeCcCccccccCChhccCCCCCCeeeCCCCcccccCcccc----ccCCCCCEEeccCCccc
Q 036049 354 VLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQL----VELTFLAFFNVSDNYLT 411 (517)
Q Consensus 354 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l----~~l~~L~~L~l~~N~l~ 411 (517)
.|+|++|+++ .+|..+. .+|+.|++++|++. .+|..+ ..++.+..|++.+|+++
T Consensus 371 ~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 371 TLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred EEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 9999999998 5666554 36889999999988 555544 34578889999999886
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=8.8e-21 Score=213.88 Aligned_cols=192 Identities=16% Similarity=0.166 Sum_probs=115.1
Q ss_pred CcEEEEEcCCCC------ceeeeCCCcccccCC-CCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccC
Q 036049 61 GHVVKLNLSHSC------LFGSINSSSSLYKLV-HLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSI 133 (517)
Q Consensus 61 ~~l~~L~Ls~n~------l~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~ 133 (517)
.+++.|.+..+. +...+|. .+..++ +|+.|++.++.+.. +|..+ ... +|++|++++|.+ ..++..+
T Consensus 558 ~~L~~L~~~~~~~~~~~~~~~~lp~--~~~~lp~~Lr~L~~~~~~l~~--lP~~f-~~~-~L~~L~L~~s~l-~~L~~~~ 630 (1153)
T PLN03210 558 RNLLFLKFYTKKWDQKKEVRWHLPE--GFDYLPPKLRLLRWDKYPLRC--MPSNF-RPE-NLVKLQMQGSKL-EKLWDGV 630 (1153)
T ss_pred ccccEEEEecccccccccceeecCc--chhhcCcccEEEEecCCCCCC--CCCcC-Ccc-CCcEEECcCccc-ccccccc
Confidence 456666665442 2223333 444443 57777777777655 56554 334 777777777776 4566667
Q ss_pred CCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceecccccccccccc
Q 036049 134 GNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLD 213 (517)
Q Consensus 134 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 213 (517)
..+++|+.|+|+++.....+| .++.+++|++|+|++|.....+|..+.++++|+.|++++|... +.+|..+ .
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L------~~Lp~~i-~ 702 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL------EILPTGI-N 702 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc------CccCCcC-C
Confidence 777777777777765444555 3667777777777777655567777777777777777765322 1455433 2
Q ss_pred ccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCc
Q 036049 214 PNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASE 287 (517)
Q Consensus 214 ~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~ 287 (517)
+++|+.|++++|......+. ...+|+.|++++|.+. .+|... .+++|+.|.+..
T Consensus 703 --l~sL~~L~Lsgc~~L~~~p~---------------~~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~ 756 (1153)
T PLN03210 703 --LKSLYRLNLSGCSRLKSFPD---------------ISTNISWLDLDETAIE-EFPSNL--RLENLDELILCE 756 (1153)
T ss_pred --CCCCCEEeCCCCCCcccccc---------------ccCCcCeeecCCCccc-cccccc--cccccccccccc
Confidence 66777777777643322111 1345667777777665 555432 345555555443
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=8.6e-21 Score=213.97 Aligned_cols=340 Identities=18% Similarity=0.201 Sum_probs=222.2
Q ss_pred CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCC-----CCCchhhhhcccCCcEEEccCCCCcccCCccCC
Q 036049 60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNS-----SEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIG 134 (517)
Q Consensus 60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-----~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~ 134 (517)
+.+++.+.+....+........+|.++++|+.|.+..+.... ..+|..+..+..+|+.|++.++.+ ..+|..|
T Consensus 531 ~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l-~~lP~~f- 608 (1153)
T PLN03210 531 TKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL-RCMPSNF- 608 (1153)
T ss_pred cceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC-CCCCCcC-
Confidence 346776666555544322222378999999999997664321 126777777766899999999998 6788877
Q ss_pred CCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccc
Q 036049 135 NFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDP 214 (517)
Q Consensus 135 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 214 (517)
...+|+.|++++|.+. .++..+..+++|++|+|+++.....+| .+..+++|++|++++|... ..+|..+..
T Consensus 609 ~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L------~~lp~si~~- 679 (1153)
T PLN03210 609 RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSL------VELPSSIQY- 679 (1153)
T ss_pred CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCc------cccchhhhc-
Confidence 5789999999999998 688889999999999999987555666 4888999999999997543 277888777
Q ss_pred cCCCCCeEeccCCc-ccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCccccccc
Q 036049 215 NMQNLNALNLSHNL-LTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQD 293 (517)
Q Consensus 215 ~l~~L~~L~Ls~n~-l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~ 293 (517)
+++|+.|++++|. ++.++.. .++++|+.|++++|...+.+|.. ..+|+.|+++..... .
T Consensus 680 -L~~L~~L~L~~c~~L~~Lp~~--------------i~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~-~ 739 (1153)
T PLN03210 680 -LNKLEDLDMSRCENLEILPTG--------------INLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIE-E 739 (1153)
T ss_pred -cCCCCEEeCCCCCCcCccCCc--------------CCCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCccc-c
Confidence 9999999999974 4443221 26789999999999766566642 356777777764311 1
Q ss_pred ccCCCcccchhhhccceee-------eecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccC
Q 036049 294 VLSPSGKLLMTTYDYLLTM-------NIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHI 366 (517)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 366 (517)
++............+... ............+++|+.|++++|...+.+|..++++++|+.|+|++|...+.+
T Consensus 740 -lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L 818 (1153)
T PLN03210 740 -FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL 818 (1153)
T ss_pred -ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee
Confidence 110000000000000000 000011111223567888888888777778888888888888888887544456
Q ss_pred ChhccCCCCCCeeeCCC---------------------CcccccCccccccCCCCCEEeccC-CcccccCCCCCcCCccC
Q 036049 367 PSCLGNLTNLESLDLSN---------------------NKFSGRIPQQLVELTFLAFFNVSD-NYLTGLIPQGKQFATFD 424 (517)
Q Consensus 367 p~~l~~l~~L~~L~Ls~---------------------N~l~~~~p~~l~~l~~L~~L~l~~-N~l~~~~p~~~~~~~l~ 424 (517)
|..+ .+++|+.|+|++ |.++ .+|..+..+++|++|++++ |++.+.++....+..+.
T Consensus 819 P~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~ 896 (1153)
T PLN03210 819 PTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLE 896 (1153)
T ss_pred CCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCC
Confidence 6543 445555555554 4444 4555566666666666666 34444433334555555
Q ss_pred CCcccCCCC
Q 036049 425 NTSFDGNSG 433 (517)
Q Consensus 425 ~~~~~~Np~ 433 (517)
.+++.+++.
T Consensus 897 ~L~l~~C~~ 905 (1153)
T PLN03210 897 TVDFSDCGA 905 (1153)
T ss_pred eeecCCCcc
Confidence 555555443
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=4.7e-21 Score=201.39 Aligned_cols=259 Identities=19% Similarity=0.185 Sum_probs=198.4
Q ss_pred CCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEE
Q 036049 87 VHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAI 166 (517)
Q Consensus 87 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L 166 (517)
..-..|+++++.++. +|+.+.. +|+.|++++|+++ .+|. .+++|++|++++|+++ .+|.. .++|++|
T Consensus 201 ~~~~~LdLs~~~Lts--LP~~l~~---~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESGLTT--LPDCLPA---HITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCCCCc--CCcchhc---CCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---cccccee
Confidence 356789999999986 8887653 8999999999994 5675 3588999999999999 45643 4689999
Q ss_pred EcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCC
Q 036049 167 YMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEP 246 (517)
Q Consensus 167 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~ 246 (517)
++++|.++ .+|.. .++|+.|++++|+++ .+|.. .++|++|++++|++++++..
T Consensus 268 ~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-------~LP~~-----p~~L~~LdLS~N~L~~Lp~l----------- 320 (788)
T PRK15387 268 SIFSNPLT-HLPAL---PSGLCKLWIFGNQLT-------SLPVL-----PPGLQELSVSDNQLASLPAL----------- 320 (788)
T ss_pred eccCCchh-hhhhc---hhhcCEEECcCCccc-------ccccc-----ccccceeECCCCccccCCCC-----------
Confidence 99999998 45543 367889999999997 55542 57899999999999986421
Q ss_pred CCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchh
Q 036049 247 RTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPD 326 (517)
Q Consensus 247 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (517)
..+|+.|++++|.++ .+|.. ..+|+.|+++++..-. ....+.
T Consensus 321 -----p~~L~~L~Ls~N~L~-~LP~l----p~~Lq~LdLS~N~Ls~----------------------------LP~lp~ 362 (788)
T PRK15387 321 -----PSELCKLWAYNNQLT-SLPTL----PSGLQELSVSDNQLAS----------------------------LPTLPS 362 (788)
T ss_pred -----cccccccccccCccc-ccccc----ccccceEecCCCccCC----------------------------CCCCCc
Confidence 246889999999998 57741 2468888887732211 111245
Q ss_pred hhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEecc
Q 036049 327 ILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVS 406 (517)
Q Consensus 327 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 406 (517)
+|+.|++++|.+.. +|.. ..+|+.|+|++|+|+ .+|.. .++|+.|++++|+++ .+|..+ .+|+.|+++
T Consensus 363 ~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls 430 (788)
T PRK15387 363 ELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVY 430 (788)
T ss_pred ccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhc
Confidence 78889999999984 6653 357999999999999 46653 368999999999998 467543 468899999
Q ss_pred CCcccccCCCCCcCCccCCCcccCCCCCC
Q 036049 407 DNYLTGLIPQGKQFATFDNTSFDGNSGLC 435 (517)
Q Consensus 407 ~N~l~~~~p~~~~~~~l~~~~~~~Np~~c 435 (517)
+|+|+..+.....+..+..+++++||+..
T Consensus 431 ~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 431 RNQLTRLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred cCcccccChHHhhccCCCeEECCCCCCCc
Confidence 99999554344567888899999999764
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.84 E-value=4.1e-21 Score=203.14 Aligned_cols=246 Identities=21% Similarity=0.338 Sum_probs=185.9
Q ss_pred CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccc
Q 036049 114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMA 193 (517)
Q Consensus 114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 193 (517)
+...|++++++++ .+|..+. ++|+.|+|++|+++ .+|..+. ++|++|++++|.++ .+|..+. .+|+.|+++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 6889999999984 5777664 58999999999999 5676654 58999999999998 5676554 579999999
Q ss_pred cccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhh
Q 036049 194 QNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKS 273 (517)
Q Consensus 194 ~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 273 (517)
+|.+. .+|..+ ..+|+.|++++|+++.++... .++|+.|++++|+++ .+|...
T Consensus 250 ~N~L~-------~LP~~l----~s~L~~L~Ls~N~L~~LP~~l---------------~~sL~~L~Ls~N~Lt-~LP~~l 302 (754)
T PRK15370 250 INRIT-------ELPERL----PSALQSLDLFHNKISCLPENL---------------PEELRYLSVYDNSIR-TLPAHL 302 (754)
T ss_pred CCccC-------cCChhH----hCCCCEEECcCCccCcccccc---------------CCCCcEEECCCCccc-cCcccc
Confidence 99987 666654 357999999999999764321 258999999999998 677543
Q ss_pred hhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCC
Q 036049 274 FLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQ 353 (517)
Q Consensus 274 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 353 (517)
. ..|+.|+++++.... .+ ...+++|+.|++++|.+++ +|..+. ++|+
T Consensus 303 p---~sL~~L~Ls~N~Lt~------------------------LP---~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~ 349 (754)
T PRK15370 303 P---SGITHLNVQSNSLTA------------------------LP---ETLPPGLKTLEAGENALTS-LPASLP--PELQ 349 (754)
T ss_pred h---hhHHHHHhcCCcccc------------------------CC---ccccccceeccccCCcccc-CChhhc--Cccc
Confidence 2 356666666522110 00 0124679999999999985 676553 7899
Q ss_pred eEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCCCC-----CcCCccCCCcc
Q 036049 354 VLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQG-----KQFATFDNTSF 428 (517)
Q Consensus 354 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~-----~~~~~l~~~~~ 428 (517)
.|+|++|+++ .+|..+. ++|++|+|++|+++ .+|..+. ..|+.|++++|+|++. |.. .....+..+++
T Consensus 350 ~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~L-P~sl~~~~~~~~~l~~L~L 422 (754)
T PRK15370 350 VLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRL-PESLPHFRGEGPQPTRIIV 422 (754)
T ss_pred EEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccC-chhHHHHhhcCCCccEEEe
Confidence 9999999998 6777663 68999999999999 5676654 3699999999999854 432 12345567788
Q ss_pred cCCCCCC
Q 036049 429 DGNSGLC 435 (517)
Q Consensus 429 ~~Np~~c 435 (517)
.+||+..
T Consensus 423 ~~Npls~ 429 (754)
T PRK15370 423 EYNPFSE 429 (754)
T ss_pred eCCCccH
Confidence 8998753
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=3.2e-20 Score=182.12 Aligned_cols=131 Identities=22% Similarity=0.201 Sum_probs=65.9
Q ss_pred EEEcCCCCcee-eeCCCcccccCCCCCEEEcCCCCCCCC---CCchhhhhcccCCcEEEccCCCCcc------cCCccCC
Q 036049 65 KLNLSHSCLFG-SINSSSSLYKLVHLEWLNLALNDFNSS---EIQPEIINLSCSLKLLDLRSCGFWG------KVPHSIG 134 (517)
Q Consensus 65 ~L~Ls~n~l~~-~~~~~~~l~~l~~L~~L~Ls~n~l~~~---~~~~~~~~~~~~L~~L~Ls~n~l~~------~~p~~~~ 134 (517)
.|+|..+.+++ .... .+..+.+|++|+++++.++.. .++..+.... +|++|+++++.+.+ .++..+.
T Consensus 2 ~l~L~~~~l~~~~~~~--~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~-~l~~l~l~~~~~~~~~~~~~~~~~~l~ 78 (319)
T cd00116 2 QLSLKGELLKTERATE--LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQP-SLKELCLSLNETGRIPRGLQSLLQGLT 78 (319)
T ss_pred ccccccCcccccchHH--HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCC-CceEEeccccccCCcchHHHHHHHHHH
Confidence 35566666652 2222 445566677777777766432 1222222332 56677776666531 1223345
Q ss_pred CCCCCcEEEccCCcccccccccccCCcc---ccEEEcccccccc----cCchhhhcC-CcccccccccccCc
Q 036049 135 NFTRLQFLYLGFNNFSGDLLGSIGNLRS---LEAIYMSKCNFSG----QITSSLRNL-TELVVLDMAQNSYG 198 (517)
Q Consensus 135 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~---L~~L~L~~n~l~~----~~p~~l~~l-~~L~~L~l~~N~l~ 198 (517)
.+++|++|++++|.+.+..+..+..+.+ |++|++++|.+++ .+...+..+ ++|++|++++|.++
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 5556666666666665444444443333 6666666665542 122233344 55555555555554
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=1.8e-20 Score=183.86 Aligned_cols=285 Identities=20% Similarity=0.180 Sum_probs=148.8
Q ss_pred EEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCccc----CCccCCCCCCCcEEEccCCccc------ccccccccCC
Q 036049 91 WLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGK----VPHSIGNFTRLQFLYLGFNNFS------GDLLGSIGNL 160 (517)
Q Consensus 91 ~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~i~------~~~p~~~~~l 160 (517)
.|+|..+.+++......+..+. +|++|+++++.+... ++..+...++|++|+++++.+. ..++..+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~-~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLL-CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHh-hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 3566666666443444444444 677777777776322 3444556666777777777665 1233455666
Q ss_pred ccccEEEcccccccccCchhhhcCCc---ccccccccccCcceeccccccccccccccC-CCCCeEeccCCcccccCCCC
Q 036049 161 RSLEAIYMSKCNFSGQITSSLRNLTE---LVVLDMAQNSYGGTMEIEGKVHKWLLDPNM-QNLNALNLSHNLLTGFDQHL 236 (517)
Q Consensus 161 ~~L~~L~L~~n~l~~~~p~~l~~l~~---L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~ 236 (517)
++|++|++++|.+.+..+..+..+.+ |++|++++|++++. ....+...+.. + ++|++|++++|.+++....
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~--~~~~l~~~l~~--~~~~L~~L~L~~n~l~~~~~~- 155 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDR--GLRLLAKGLKD--LPPALEKLVLGRNRLEGASCE- 155 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchH--HHHHHHHHHHh--CCCCceEEEcCCCcCCchHHH-
Confidence 77777777777776555555555544 77777777766521 00011222222 4 6677777777776632110
Q ss_pred CCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecC
Q 036049 237 VLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKG 316 (517)
Q Consensus 237 ~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (517)
.....+..+++|++|++++|.+++.........+.
T Consensus 156 -------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~-------------------------------------- 190 (319)
T cd00116 156 -------ALAKALRANRDLKELNLANNGIGDAGIRALAEGLK-------------------------------------- 190 (319)
T ss_pred -------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHH--------------------------------------
Confidence 00111234556777777777766321111100000
Q ss_pred ccccCCCchhhhhhhhCCCCCCccc----CcccccCCCCCCeEeCcCccccccCChhcc-----CCCCCCeeeCCCCccc
Q 036049 317 RMMAYNKIPDILAGIILSNKSFDGA----IPASISNLKGLQVLNLHNNNLQGHIPSCLG-----NLTNLESLDLSNNKFS 387 (517)
Q Consensus 317 ~~~~~~~~~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~Ls~N~l~ 387 (517)
..+.|+.|++++|.+++. ++..+..+++|++|++++|.+++.....+. ..+.|++|++++|.++
T Consensus 191 -------~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 191 -------ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred -------hCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 012344455555554422 223345566677777777766642222221 1356777777777665
Q ss_pred c----cCccccccCCCCCEEeccCCcccccCCC----C-CcC-CccCCCcccCCCC
Q 036049 388 G----RIPQQLVELTFLAFFNVSDNYLTGLIPQ----G-KQF-ATFDNTSFDGNSG 433 (517)
Q Consensus 388 ~----~~p~~l~~l~~L~~L~l~~N~l~~~~p~----~-~~~-~~l~~~~~~~Np~ 433 (517)
. .+...+..+++|+++++++|.++..... . ..+ ..+..+++.+|||
T Consensus 264 ~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 264 DDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred cHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 2 2334445556677777777776633111 1 122 3455556666654
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.76 E-value=5.5e-20 Score=171.43 Aligned_cols=316 Identities=19% Similarity=0.195 Sum_probs=177.1
Q ss_pred CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccC-CCCcccCCccCCCCCC
Q 036049 60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRS-CGFWGKVPHSIGNFTR 138 (517)
Q Consensus 60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~p~~~~~l~~ 138 (517)
+...+.|+|..|+|+...+. +|..+++|+.||||+|.|+.. -|..+..+. +|..|-+.+ |+|+......|++|..
T Consensus 66 P~~tveirLdqN~I~~iP~~--aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~-~l~~Lvlyg~NkI~~l~k~~F~gL~s 141 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPG--AFKTLHRLRRLDLSKNNISFI-APDAFKGLA-SLLSLVLYGNNKITDLPKGAFGGLSS 141 (498)
T ss_pred CCcceEEEeccCCcccCChh--hccchhhhceecccccchhhc-ChHhhhhhH-hhhHHHhhcCCchhhhhhhHhhhHHH
Confidence 46789999999999977777 999999999999999999884 445555555 665555544 8886555566777766
Q ss_pred CcEEEccCCccccccccccc------------------------CCccccEEEccccccc--------------------
Q 036049 139 LQFLYLGFNNFSGDLLGSIG------------------------NLRSLEAIYMSKCNFS-------------------- 174 (517)
Q Consensus 139 L~~L~Ls~n~i~~~~p~~~~------------------------~l~~L~~L~L~~n~l~-------------------- 174 (517)
|+.|.+.-|++.-...+.|. .+..++++.+..|.+.
T Consensus 142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets 221 (498)
T KOG4237|consen 142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS 221 (498)
T ss_pred HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence 66666655543332222232 2333333333222200
Q ss_pred -----------------------------------------ccCc-hhhhcCCcccccccccccCcceecccccccc-cc
Q 036049 175 -----------------------------------------GQIT-SSLRNLTELVVLDMAQNSYGGTMEIEGKVHK-WL 211 (517)
Q Consensus 175 -----------------------------------------~~~p-~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~~ 211 (517)
...| ..|..+++|++|++++|+++ .|.+ ++
T Consensus 222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-------~i~~~aF 294 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-------RIEDGAF 294 (498)
T ss_pred cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-------hhhhhhh
Confidence 0111 12455666677777777666 2222 22
Q ss_pred ccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCccccc
Q 036049 212 LDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYL 291 (517)
Q Consensus 212 ~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l 291 (517)
.. ...+++|.|..|+|..+... .|.++..|+.|+|.+|+|+ .+.+..|..+..|..+++-.+...
T Consensus 295 e~--~a~l~eL~L~~N~l~~v~~~------------~f~~ls~L~tL~L~~N~it-~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 295 EG--AAELQELYLTRNKLEFVSSG------------MFQGLSGLKTLSLYDNQIT-TVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred cc--hhhhhhhhcCcchHHHHHHH------------hhhccccceeeeecCCeeE-EEecccccccceeeeeehccCccc
Confidence 22 56666666666666654322 3456666666677776666 444455666666666554332111
Q ss_pred c------------cccCCCcccc----hhhhccceeeeecCcccc---------CC---Cchhhhh-hhhCCCCCCcccC
Q 036049 292 Q------------DVLSPSGKLL----MTTYDYLLTMNIKGRMMA---------YN---KIPDILA-GIILSNKSFDGAI 342 (517)
Q Consensus 292 ~------------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~---------~~---~~~~~L~-~L~Ls~n~l~~~~ 342 (517)
. ..-....+.. ......+.+..+...... .. .-.+-+. ....|+..++ .+
T Consensus 360 CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~l 438 (498)
T KOG4237|consen 360 CNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LL 438 (498)
T ss_pred CccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hc
Confidence 0 0000000000 000000000000000000 00 0011222 2334444444 56
Q ss_pred cccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCC
Q 036049 343 PASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDN 408 (517)
Q Consensus 343 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N 408 (517)
|..+. ..-.+|++.+|.++ .+|.. .+.+| .+|+++|+|+..--..|.+++.|.+|-|++|
T Consensus 439 p~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 439 PRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred CCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 65443 45678899999998 77775 56778 8899999998666677888999999988876
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.74 E-value=2.9e-20 Score=154.05 Aligned_cols=159 Identities=26% Similarity=0.437 Sum_probs=131.0
Q ss_pred CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCC
Q 036049 60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRL 139 (517)
Q Consensus 60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 139 (517)
..+++.|.||+|.++. +|+ .+..+.+|+.|++++|+++. +|..+..+. +|+.|++.-|++ ...|..|+.++.|
T Consensus 32 ~s~ITrLtLSHNKl~~-vpp--nia~l~nlevln~~nnqie~--lp~~issl~-klr~lnvgmnrl-~~lprgfgs~p~l 104 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTV-VPP--NIAELKNLEVLNLSNNQIEE--LPTSISSLP-KLRILNVGMNRL-NILPRGFGSFPAL 104 (264)
T ss_pred hhhhhhhhcccCceee-cCC--cHHHhhhhhhhhcccchhhh--cChhhhhch-hhhheecchhhh-hcCccccCCCchh
Confidence 3578888888888874 444 67888888888888888877 788888887 888888888888 6788888888888
Q ss_pred cEEEccCCcccc-cccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCC
Q 036049 140 QFLYLGFNNFSG-DLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQN 218 (517)
Q Consensus 140 ~~L~Ls~n~i~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~ 218 (517)
+.|||++|++.. .+|..|..|..|+.|+|++|.+. .+|..++++++|+.|.+.+|.+- .+|..++. ++.
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-------~lpkeig~--lt~ 174 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-------SLPKEIGD--LTR 174 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-------hCcHHHHH--HHH
Confidence 888888888864 57888888888888888888888 77888888888888888888876 77888877 888
Q ss_pred CCeEeccCCcccccCCC
Q 036049 219 LNALNLSHNLLTGFDQH 235 (517)
Q Consensus 219 L~~L~Ls~n~l~~~~~~ 235 (517)
|++|.+.+|+++-++|.
T Consensus 175 lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 175 LRELHIQGNRLTVLPPE 191 (264)
T ss_pred HHHHhcccceeeecChh
Confidence 88888888888877655
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.72 E-value=1.4e-19 Score=150.00 Aligned_cols=163 Identities=24% Similarity=0.434 Sum_probs=149.0
Q ss_pred ccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCc
Q 036049 82 SLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLR 161 (517)
Q Consensus 82 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~ 161 (517)
.+.++.+++.|.||+|+++. +|+.+..+. +|+.|++++|.+ ..+|.+++.+++|+.|+++-|++. .+|..|+.++
T Consensus 28 gLf~~s~ITrLtLSHNKl~~--vppnia~l~-nlevln~~nnqi-e~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p 102 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTV--VPPNIAELK-NLEVLNLSNNQI-EELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP 102 (264)
T ss_pred cccchhhhhhhhcccCceee--cCCcHHHhh-hhhhhhcccchh-hhcChhhhhchhhhheecchhhhh-cCccccCCCc
Confidence 46677888999999999987 899999999 999999999999 788999999999999999999999 8999999999
Q ss_pred cccEEEccccccc-ccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCC
Q 036049 162 SLEAIYMSKCNFS-GQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLP 240 (517)
Q Consensus 162 ~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~ 240 (517)
.|++|||.+|++. ..+|..|..++.|+.|++++|.+. .+|..++. +++|+.|.+..|.+-.++..
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-------~lp~dvg~--lt~lqil~lrdndll~lpke----- 168 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-------ILPPDVGK--LTNLQILSLRDNDLLSLPKE----- 168 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-------cCChhhhh--hcceeEEeeccCchhhCcHH-----
Confidence 9999999999986 568999999999999999999997 88999988 99999999999998877543
Q ss_pred CCCCCCCCCCCCCcccEEEccCCcCCCCCChh
Q 036049 241 GNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSK 272 (517)
Q Consensus 241 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 272 (517)
++.+..|+.|.+.+|+++ .+|++
T Consensus 169 --------ig~lt~lrelhiqgnrl~-vlppe 191 (264)
T KOG0617|consen 169 --------IGDLTRLRELHIQGNRLT-VLPPE 191 (264)
T ss_pred --------HHHHHHHHHHhcccceee-ecChh
Confidence 478899999999999998 77765
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.65 E-value=2.2e-16 Score=166.75 Aligned_cols=118 Identities=41% Similarity=0.721 Sum_probs=106.6
Q ss_pred hhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEecc
Q 036049 327 ILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVS 406 (517)
Q Consensus 327 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 406 (517)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|..+..+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCC--cCCccCCCcccCCCCCCCCCCCCCCC
Q 036049 407 DNYLTGLIPQGK--QFATFDNTSFDGNSGLCGKPLSKGCE 444 (517)
Q Consensus 407 ~N~l~~~~p~~~--~~~~l~~~~~~~Np~~c~~~~~~~c~ 444 (517)
+|+++|.+|... .+..+..+++.+|+.+|+.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999752 23445677899999999877655664
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.59 E-value=8.7e-15 Score=154.62 Aligned_cols=149 Identities=30% Similarity=0.432 Sum_probs=107.0
Q ss_pred CchHhHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCCCCCCCCc-----ccceeecCCCC----CcEEEEEcCCCCcee
Q 036049 5 CHDDERSALLQFKESRISGDFYAWKFDCRPTMASWKPEEGNVDCC-----SWDGVHCNKNT----GHVVKLNLSHSCLFG 75 (517)
Q Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~C-----~w~gv~c~~~~----~~l~~L~Ls~n~l~~ 75 (517)
+.++|..||+++|+++..+. ..+|.. ++| .|.|+.|.... ..++.|+|++|.+.+
T Consensus 369 t~~~~~~aL~~~k~~~~~~~-----------~~~W~g-----~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g 432 (623)
T PLN03150 369 TLLEEVSALQTLKSSLGLPL-----------RFGWNG-----DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRG 432 (623)
T ss_pred cCchHHHHHHHHHHhcCCcc-----------cCCCCC-----CCCCCcccccccceeeccCCCCceEEEEEECCCCCccc
Confidence 45679999999999876432 247864 334 79999995321 247888888888887
Q ss_pred eeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccc
Q 036049 76 SINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLG 155 (517)
Q Consensus 76 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~ 155 (517)
.+|. .+..+++|+.|+|++|.+.+. +|..+..+. +|++|+|++|.+.+.+|+.++++++|++|+|++|.+++.+|.
T Consensus 433 ~ip~--~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~-~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~ 508 (623)
T PLN03150 433 FIPN--DISKLRHLQSINLSGNSIRGN-IPPSLGSIT-SLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA 508 (623)
T ss_pred cCCH--HHhCCCCCCEEECCCCcccCc-CChHHhCCC-CCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCCh
Confidence 7777 777788888888888877764 666666666 777777777777777777777777777777777777777777
Q ss_pred cccCC-ccccEEEcccccc
Q 036049 156 SIGNL-RSLEAIYMSKCNF 173 (517)
Q Consensus 156 ~~~~l-~~L~~L~L~~n~l 173 (517)
.+..+ .++..+++.+|..
T Consensus 509 ~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 509 ALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred HHhhccccCceEEecCCcc
Confidence 66543 3455666666643
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.43 E-value=2.5e-15 Score=146.75 Aligned_cols=108 Identities=26% Similarity=0.389 Sum_probs=61.5
Q ss_pred ccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccc
Q 036049 84 YKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSL 163 (517)
Q Consensus 84 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L 163 (517)
..+..-...||+.|++.. +|..+..+. .|+.+.|..|.+ ..+|..++++..|++|||+.|+++ .+|..++.|+ |
T Consensus 72 ~~ltdt~~aDlsrNR~~e--lp~~~~~f~-~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-L 145 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFSE--LPEEACAFV-SLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-L 145 (722)
T ss_pred ccccchhhhhcccccccc--CchHHHHHH-HHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-c
Confidence 344445556666666655 555555555 566666666666 455556666666666666666666 5555555543 5
Q ss_pred cEEEcccccccccCchhhhcCCcccccccccccCc
Q 036049 164 EAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYG 198 (517)
Q Consensus 164 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~ 198 (517)
+.|-+++|+++ .+|+.++.+..|..||.+.|.+.
T Consensus 146 kvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~ 179 (722)
T KOG0532|consen 146 KVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ 179 (722)
T ss_pred eeEEEecCccc-cCCcccccchhHHHhhhhhhhhh
Confidence 56666666655 45555555555555555555443
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.38 E-value=2.7e-14 Score=139.64 Aligned_cols=131 Identities=23% Similarity=0.309 Sum_probs=85.8
Q ss_pred CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccc
Q 036049 114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMA 193 (517)
Q Consensus 114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 193 (517)
.-...||+.|++ ..+|..+..+..|+.+.|..|.+. .+|..++++..|++|||+.|+++ .+|..+..++ |+.|-++
T Consensus 76 dt~~aDlsrNR~-~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 76 DTVFADLSRNRF-SELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred chhhhhcccccc-ccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence 344566777776 456666666667777777777776 56667777777777777777776 5566665554 6667777
Q ss_pred cccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCCh
Q 036049 194 QNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPS 271 (517)
Q Consensus 194 ~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 271 (517)
+|+++ .+|..++. ...|..||.+.|.+..+++. ++++.+|+.|.+..|++. .+|+
T Consensus 152 NNkl~-------~lp~~ig~--~~tl~~ld~s~nei~slpsq-------------l~~l~slr~l~vrRn~l~-~lp~ 206 (722)
T KOG0532|consen 152 NNKLT-------SLPEEIGL--LPTLAHLDVSKNEIQSLPSQ-------------LGYLTSLRDLNVRRNHLE-DLPE 206 (722)
T ss_pred cCccc-------cCCccccc--chhHHHhhhhhhhhhhchHH-------------hhhHHHHHHHHHhhhhhh-hCCH
Confidence 77766 66666664 66677777777777665443 255666666666666665 4444
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.36 E-value=8.7e-13 Score=133.30 Aligned_cols=85 Identities=46% Similarity=0.623 Sum_probs=46.8
Q ss_pred hhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccC
Q 036049 328 LAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSD 407 (517)
Q Consensus 328 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~ 407 (517)
|+++++++|.+. ..+..+..+.++..|.+++|++. ..+..++.+++++.|++++|+++. ++. +..+.+++.|++++
T Consensus 211 L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~ 286 (394)
T COG4886 211 LEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSG 286 (394)
T ss_pred hhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc-ccc-ccccCccCEEeccC
Confidence 444444444322 23334455555666666666665 335555666666666666666663 322 55666666666666
Q ss_pred CcccccCCC
Q 036049 408 NYLTGLIPQ 416 (517)
Q Consensus 408 N~l~~~~p~ 416 (517)
|.++..+|.
T Consensus 287 n~~~~~~~~ 295 (394)
T COG4886 287 NSLSNALPL 295 (394)
T ss_pred ccccccchh
Confidence 666655443
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.33 E-value=2e-12 Score=130.67 Aligned_cols=199 Identities=36% Similarity=0.482 Sum_probs=120.6
Q ss_pred EEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCc-cccEEEcccccccccCchhhhcCCcccccccccc
Q 036049 117 LLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLR-SLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQN 195 (517)
Q Consensus 117 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N 195 (517)
.+++..|.+. .....+..++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4666666552 22223445566777777777777 4555555553 7777777777776 45556677777777777777
Q ss_pred cCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhh
Q 036049 196 SYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFL 275 (517)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 275 (517)
++. .+|..... .++|+.|++++|+++.+++.. .....|++|.+++|++. ..+.. +.
T Consensus 174 ~l~-------~l~~~~~~--~~~L~~L~ls~N~i~~l~~~~-------------~~~~~L~~l~~~~N~~~-~~~~~-~~ 229 (394)
T COG4886 174 DLS-------DLPKLLSN--LSNLNNLDLSGNKISDLPPEI-------------ELLSALEELDLSNNSII-ELLSS-LS 229 (394)
T ss_pred hhh-------hhhhhhhh--hhhhhheeccCCccccCchhh-------------hhhhhhhhhhhcCCcce-ecchh-hh
Confidence 776 45544333 677777777777777665431 23445777777777533 22211 11
Q ss_pred cccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeE
Q 036049 276 CWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVL 355 (517)
Q Consensus 276 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 355 (517)
. ...+..+.+.+|.+. ..+..+..+++++.|
T Consensus 230 ~------------------------------------------------~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L 260 (394)
T COG4886 230 N------------------------------------------------LKNLSGLELSNNKLE-DLPESIGNLSNLETL 260 (394)
T ss_pred h------------------------------------------------cccccccccCCceee-eccchhcccccccee
Confidence 1 122333334445444 224556677778888
Q ss_pred eCcCccccccCChhccCCCCCCeeeCCCCcccccCccc
Q 036049 356 NLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQ 393 (517)
Q Consensus 356 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 393 (517)
++++|+++ .++. ++.+.+++.|++++|.+....|..
T Consensus 261 ~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 261 DLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred cccccccc-cccc-ccccCccCEEeccCccccccchhh
Confidence 88888887 4444 777788888888888777554443
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.21 E-value=3e-12 Score=116.03 Aligned_cols=229 Identities=22% Similarity=0.212 Sum_probs=129.8
Q ss_pred hhcccCCcEEEccCCC--------CcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchh
Q 036049 109 INLSCSLKLLDLRSCG--------FWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSS 180 (517)
Q Consensus 109 ~~~~~~L~~L~Ls~n~--------l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 180 (517)
..+.+.|.+|..+... +...+|-.+.-+++|..+.+|.+.-. .+.+-...-+.|+++.+.+..+.. .| .
T Consensus 178 ldf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~~-~~-~ 254 (490)
T KOG1259|consen 178 LDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQD-VP-S 254 (490)
T ss_pred HHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchh-heeceeecCchhheeeeecccccc-cc-c
Confidence 3344466666655432 11223333444566666666665443 222222233567777766655441 11 1
Q ss_pred hhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEc
Q 036049 181 LRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDL 260 (517)
Q Consensus 181 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~L 260 (517)
+-.++.+....-+.-.. ..|.+...+.. .+.|+++|||+|.|+.+.... .-.|.++.|++
T Consensus 255 l~pe~~~~D~~~~E~~t-----~~G~~~~~~dT--Wq~LtelDLS~N~I~~iDESv-------------KL~Pkir~L~l 314 (490)
T KOG1259|consen 255 LLPETILADPSGSEPST-----SNGSALVSADT--WQELTELDLSGNLITQIDESV-------------KLAPKLRRLIL 314 (490)
T ss_pred ccchhhhcCccCCCCCc-----cCCceEEecch--Hhhhhhccccccchhhhhhhh-------------hhccceeEEec
Confidence 22222222221111111 11222222222 567889999999888765442 44678899999
Q ss_pred cCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcc
Q 036049 261 SDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDG 340 (517)
Q Consensus 261 s~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 340 (517)
|+|.+. .+-. +.. +.+|+.||||+|.++
T Consensus 315 S~N~i~-~v~n--La~------------------------------------------------L~~L~~LDLS~N~Ls- 342 (490)
T KOG1259|consen 315 SQNRIR-TVQN--LAE------------------------------------------------LPQLQLLDLSGNLLA- 342 (490)
T ss_pred ccccee-eehh--hhh------------------------------------------------cccceEeecccchhH-
Confidence 999886 2221 111 345666667777666
Q ss_pred cCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCccccc-CccccccCCCCCEEeccCCcccccC
Q 036049 341 AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGR-IPQQLVELTFLAFFNVSDNYLTGLI 414 (517)
Q Consensus 341 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~~~~ 414 (517)
.+..+-..+.+++.|.|+.|.|.. -..+..+-+|..||+++|+|... -...++++|.|+.+.+.+|++.+.+
T Consensus 343 ~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 343 ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 334445567788888888888752 23466777888888888888742 2256778888888888888887554
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.16 E-value=9.9e-13 Score=121.79 Aligned_cols=66 Identities=24% Similarity=0.301 Sum_probs=38.0
Q ss_pred cccCCCCCCeEeCcCccccccCChhc-----cCCCCCCeeeCCCCccccc----CccccccCCCCCEEeccCCcc
Q 036049 345 SISNLKGLQVLNLHNNNLQGHIPSCL-----GNLTNLESLDLSNNKFSGR----IPQQLVELTFLAFFNVSDNYL 410 (517)
Q Consensus 345 ~~~~l~~L~~L~Ls~N~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~l~~N~l 410 (517)
.++.+++|++|++++|.+...-...| ...++|+.|.+.+|.|+.. +...+...+.|..|+|++|.+
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 34445666677777766654333222 2356677777777766532 223344466777777777776
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.15 E-value=1.9e-11 Score=106.32 Aligned_cols=109 Identities=28% Similarity=0.346 Sum_probs=31.3
Q ss_pred cccCCCCCEEEcCCCCCCCCCCchhhhh-cccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccc-cCC
Q 036049 83 LYKLVHLEWLNLALNDFNSSEIQPEIIN-LSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSI-GNL 160 (517)
Q Consensus 83 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~-~~l 160 (517)
+.+..++++|+|++|.|+. + +.+.. +. +|+.|++++|.|.. +. .+..+++|++|++++|.|+. +.+.+ ..+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~--I-e~L~~~l~-~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~l 87 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST--I-ENLGATLD-KLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNL 87 (175)
T ss_dssp ------------------------S--TT-T-T--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-
T ss_pred ccccccccccccccccccc--c-cchhhhhc-CCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCc-cccchHHhC
Confidence 4445566777777777754 2 23332 33 67777777777733 32 46667777777777777773 33333 356
Q ss_pred ccccEEEcccccccccC-chhhhcCCcccccccccccCc
Q 036049 161 RSLEAIYMSKCNFSGQI-TSSLRNLTELVVLDMAQNSYG 198 (517)
Q Consensus 161 ~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~l~~N~l~ 198 (517)
++|++|++++|+|...- -..+..+++|++|++.+|.++
T Consensus 88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 77777777777775321 134556667777777777665
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=5.4e-12 Score=120.12 Aligned_cols=210 Identities=19% Similarity=0.131 Sum_probs=138.7
Q ss_pred CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCcc-CCCCCC
Q 036049 60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHS-IGNFTR 138 (517)
Q Consensus 60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~ 138 (517)
..+++.+.|.+........ ......|++++.||||.|-+..-..-..+..-.++|+.|+|+.|++.-..... -..+++
T Consensus 120 ~kkL~~IsLdn~~V~~~~~-~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGI-EEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCccccccch-hhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 3578888888887653221 12566799999999999987653122344444459999999999984322221 235788
Q ss_pred CcEEEccCCccccccc-ccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCC
Q 036049 139 LQFLYLGFNNFSGDLL-GSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQ 217 (517)
Q Consensus 139 L~~L~Ls~n~i~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~ 217 (517)
|+.|.|+.|.++.... ......|+|+.|+|..|............+..|++|||++|++. ..+.......++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-------~~~~~~~~~~l~ 271 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-------DFDQGYKVGTLP 271 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-------cccccccccccc
Confidence 9999999999984322 22356799999999999543344445566788999999999887 333222222388
Q ss_pred CCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCCh-hhhhcccccceec
Q 036049 218 NLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPS-KSFLCWNAMKIVN 284 (517)
Q Consensus 218 ~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~~l~~L~~L~ 284 (517)
.|+.|+++.+.+.++.... + ........+++|++|+++.|++. ..+. .....+.+|+.+.
T Consensus 272 ~L~~Lnls~tgi~si~~~d----~--~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 272 GLNQLNLSSTGIASIAEPD----V--ESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLR 332 (505)
T ss_pred chhhhhccccCcchhcCCC----c--cchhhhcccccceeeecccCccc-cccccchhhccchhhhhh
Confidence 9999999999888753221 0 00011256889999999999996 3432 2233455555555
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.6e-11 Score=116.92 Aligned_cols=212 Identities=20% Similarity=0.200 Sum_probs=125.2
Q ss_pred CCCCCCcEEEccCCccccccc--ccccCCccccEEEccccccccc--CchhhhcCCcccccccccccCcceecccccccc
Q 036049 134 GNFTRLQFLYLGFNNFSGDLL--GSIGNLRSLEAIYMSKCNFSGQ--ITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHK 209 (517)
Q Consensus 134 ~~l~~L~~L~Ls~n~i~~~~p--~~~~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 209 (517)
.++.+|+...|.+..+.. .+ .....+++++.|||+.|-+..- +-.....+++|+.|+++.|++.... +..-.
T Consensus 118 sn~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~---~s~~~ 193 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI---SSNTT 193 (505)
T ss_pred hhHHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCc---cccch
Confidence 355667777777666652 22 2445666777777777766522 2233455666666777666654110 00000
Q ss_pred ccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCccc
Q 036049 210 WLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELR 289 (517)
Q Consensus 210 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~ 289 (517)
..+++|+.|.|+.|.++.-.... ....+|+|+.|+|..|.....
T Consensus 194 ----~~l~~lK~L~l~~CGls~k~V~~-----------~~~~fPsl~~L~L~~N~~~~~--------------------- 237 (505)
T KOG3207|consen 194 ----LLLSHLKQLVLNSCGLSWKDVQW-----------ILLTFPSLEVLYLEANEIILI--------------------- 237 (505)
T ss_pred ----hhhhhhheEEeccCCCCHHHHHH-----------HHHhCCcHHHhhhhcccccce---------------------
Confidence 01455666666666555221110 112355556666655531100
Q ss_pred ccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccC-cccccCCCCCCeEeCcCcccccc-CC
Q 036049 290 YLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAI-PASISNLKGLQVLNLHNNNLQGH-IP 367 (517)
Q Consensus 290 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~-~p 367 (517)
...-...+..|++|||++|++.... -...+.++.|+.|+++.+.+... .|
T Consensus 238 ----------------------------~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~ 289 (505)
T KOG3207|consen 238 ----------------------------KATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEP 289 (505)
T ss_pred ----------------------------ecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCC
Confidence 0111233678999999999987432 13467789999999999988732 23
Q ss_pred hh-----ccCCCCCCeeeCCCCccccc-CccccccCCCCCEEeccCCccccc
Q 036049 368 SC-----LGNLTNLESLDLSNNKFSGR-IPQQLVELTFLAFFNVSDNYLTGL 413 (517)
Q Consensus 368 ~~-----l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~~~ 413 (517)
+. ...+++|++|+++.|+|.+. .-..+..+++|+.|.+..|.++..
T Consensus 290 d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 290 DVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred CccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 32 35678999999999999632 123466678899999999998844
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.11 E-value=2.3e-11 Score=105.84 Aligned_cols=80 Identities=26% Similarity=0.417 Sum_probs=21.2
Q ss_pred CCcEEEccCCCCcccCCccCC-CCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhh-hcCCcccccc
Q 036049 114 SLKLLDLRSCGFWGKVPHSIG-NFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSL-RNLTELVVLD 191 (517)
Q Consensus 114 ~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~ 191 (517)
++++|+|++|.|.. + +.++ .+.+|+.|++++|.|+. + +.+..+++|++|++++|+|+. +.+.+ ..+++|++|+
T Consensus 20 ~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred cccccccccccccc-c-cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEE
Confidence 57777777777733 2 2344 46677777777777773 2 246667777777777777763 33333 3466666666
Q ss_pred cccccCc
Q 036049 192 MAQNSYG 198 (517)
Q Consensus 192 l~~N~l~ 198 (517)
+++|++.
T Consensus 95 L~~N~I~ 101 (175)
T PF14580_consen 95 LSNNKIS 101 (175)
T ss_dssp -TTS---
T ss_pred CcCCcCC
Confidence 6666654
No 35
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.08 E-value=2.6e-11 Score=122.77 Aligned_cols=244 Identities=21% Similarity=0.238 Sum_probs=130.5
Q ss_pred CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccc
Q 036049 114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMA 193 (517)
Q Consensus 114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 193 (517)
.++.+++..|.+.. +-..+..+++|+.|++..|.|.. +...+..+++|++|++++|.|+... .+..++.|+.|+++
T Consensus 73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLS 148 (414)
T ss_pred hHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhheec
Confidence 55555566666532 22335566666666666666663 2222555666666666666666332 24455556666666
Q ss_pred cccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhh
Q 036049 194 QNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKS 273 (517)
Q Consensus 194 ~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 273 (517)
+|.+... . .+.. +..|+.+++++|.++.+... . ...+.+++.+++.+|.+. .+..
T Consensus 149 ~N~i~~~-------~-~~~~--l~~L~~l~l~~n~i~~ie~~-----------~-~~~~~~l~~l~l~~n~i~-~i~~-- 203 (414)
T KOG0531|consen 149 GNLISDI-------S-GLES--LKSLKLLDLSYNRIVDIEND-----------E-LSELISLEELDLGGNSIR-EIEG-- 203 (414)
T ss_pred cCcchhc-------c-CCcc--chhhhcccCCcchhhhhhhh-----------h-hhhccchHHHhccCCchh-cccc--
Confidence 6666521 1 1111 55666666666666654321 0 134556666666666665 2221
Q ss_pred hhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchh--hhhhhhCCCCCCcccCcccccCCCC
Q 036049 274 FLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPD--ILAGIILSNKSFDGAIPASISNLKG 351 (517)
Q Consensus 274 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~~L~Ls~n~l~~~~p~~~~~l~~ 351 (517)
+..+..+..+++....... +.+. .... .|+.+++++|.+.. .+..+..+..
T Consensus 204 ~~~~~~l~~~~l~~n~i~~---------------------~~~l-----~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~ 256 (414)
T KOG0531|consen 204 LDLLKKLVLLSLLDNKISK---------------------LEGL-----NELVMLHLRELYLSGNRISR-SPEGLENLKN 256 (414)
T ss_pred hHHHHHHHHhhccccccee---------------------ccCc-----ccchhHHHHHHhcccCcccc-cccccccccc
Confidence 1111111111111100000 0000 0011 37788888888873 3345666778
Q ss_pred CCeEeCcCccccccCChhccCCCCCCeeeCCCCccccc---Cccc-cccCCCCCEEeccCCcccccCC
Q 036049 352 LQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGR---IPQQ-LVELTFLAFFNVSDNYLTGLIP 415 (517)
Q Consensus 352 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~---~p~~-l~~l~~L~~L~l~~N~l~~~~p 415 (517)
+..|++..|++... ..+...+.+..+..+.|++... .... ....+.++.+.+.+|++....+
T Consensus 257 l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 257 LPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 88888888887632 2245566777777777776532 1121 4556778888888888776554
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=2.6e-11 Score=110.00 Aligned_cols=106 Identities=24% Similarity=0.293 Sum_probs=86.1
Q ss_pred hhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEe
Q 036049 325 PDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFN 404 (517)
Q Consensus 325 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 404 (517)
.+.++.|++|+|.+... ..+..+++|+.||||+|.++ .+..+-..+.+.+.|.|+.|.|... ..+..+-+|..||
T Consensus 306 ~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLD 380 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLD 380 (490)
T ss_pred ccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheecc
Confidence 56688889999998743 23778999999999999998 6666667788999999999999733 4678889999999
Q ss_pred ccCCccccc--CCCCCcCCccCCCcccCCCCCC
Q 036049 405 VSDNYLTGL--IPQGKQFATFDNTSFDGNSGLC 435 (517)
Q Consensus 405 l~~N~l~~~--~p~~~~~~~l~~~~~~~Np~~c 435 (517)
+++|+|... +-..+.++.++.+.+.+||..-
T Consensus 381 l~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 381 LSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred ccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 999999744 2334678888999999998754
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.04 E-value=2.3e-10 Score=123.91 Aligned_cols=129 Identities=26% Similarity=0.296 Sum_probs=89.9
Q ss_pred CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCC--CCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCC
Q 036049 61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALND--FNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTR 138 (517)
Q Consensus 61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~--l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 138 (517)
..+++..+-+|.+...... ...+.|++|-+..|. +.. ++..++...+.|++|||++|.-.+.+|+.++.|-+
T Consensus 523 ~~~rr~s~~~~~~~~~~~~----~~~~~L~tLll~~n~~~l~~--is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGS----SENPKLRTLLLQRNSDWLLE--ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred hheeEEEEeccchhhccCC----CCCCccceEEEeecchhhhh--cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 3566666666666433211 234467777777775 433 55665655558888888877666778888888888
Q ss_pred CcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCccccccccccc
Q 036049 139 LQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNS 196 (517)
Q Consensus 139 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~ 196 (517)
|++|+++++.+. .+|..+++++.|.+|++..+.-...+|..+..+++|++|.+....
T Consensus 597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 888888888887 778888888888888888777655556666678888888776544
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.03 E-value=4.9e-11 Score=120.80 Aligned_cols=243 Identities=24% Similarity=0.240 Sum_probs=144.2
Q ss_pred cEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcE
Q 036049 62 HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQF 141 (517)
Q Consensus 62 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 141 (517)
.+..+++..|.+.... . .+..+++|+.|++.+|.|.. +...+..+. +|++|++++|.|+... .+..++.|+.
T Consensus 73 ~l~~l~l~~n~i~~~~-~--~l~~~~~l~~l~l~~n~i~~--i~~~l~~~~-~L~~L~ls~N~I~~i~--~l~~l~~L~~ 144 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKIL-N--HLSKLKSLEALDLYDNKIEK--IENLLSSLV-NLQVLDLSFNKITKLE--GLSTLTLLKE 144 (414)
T ss_pred hHHhhccchhhhhhhh-c--ccccccceeeeeccccchhh--cccchhhhh-cchheecccccccccc--chhhccchhh
Confidence 3445556666665311 1 36667777777777777765 333244455 7777777777774332 3556666777
Q ss_pred EEccCCcccccccccccCCccccEEEcccccccccCc-hhhhcCCcccccccccccCcceeccccccccccccccCCCCC
Q 036049 142 LYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQIT-SSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLN 220 (517)
Q Consensus 142 L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~ 220 (517)
|++++|.|+. ...+..++.|+.+++++|++....+ . ...+.+++.+++.+|.+.. + ..+.. +..+.
T Consensus 145 L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~-------i-~~~~~--~~~l~ 211 (414)
T KOG0531|consen 145 LNLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE-------I-EGLDL--LKKLV 211 (414)
T ss_pred heeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc-------c-cchHH--HHHHH
Confidence 7777777763 3345557777777777777764333 2 4667777777777776641 1 11111 34445
Q ss_pred eEeccCCcccccCCCCCCCCCCCCCCCCCCCCC--cccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCC
Q 036049 221 ALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFS--KLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPS 298 (517)
Q Consensus 221 ~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 298 (517)
.+++..|.++.+.+. ..+. +|+.+++++|++. .++.. ..
T Consensus 212 ~~~l~~n~i~~~~~l--------------~~~~~~~L~~l~l~~n~i~-~~~~~-~~----------------------- 252 (414)
T KOG0531|consen 212 LLSLLDNKISKLEGL--------------NELVMLHLRELYLSGNRIS-RSPEG-LE----------------------- 252 (414)
T ss_pred HhhcccccceeccCc--------------ccchhHHHHHHhcccCccc-ccccc-cc-----------------------
Confidence 556667766654322 1222 2777777777776 32200 11
Q ss_pred cccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCcccccc---CChh-ccCCC
Q 036049 299 GKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGH---IPSC-LGNLT 374 (517)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~~-l~~l~ 374 (517)
....+..+++.+|.+... ..+.....+..+.+..|.+... .... ....+
T Consensus 253 -------------------------~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (414)
T KOG0531|consen 253 -------------------------NLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAP 305 (414)
T ss_pred -------------------------ccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccc
Confidence 134456667777776643 2244556777788888877521 1121 56678
Q ss_pred CCCeeeCCCCcccccCc
Q 036049 375 NLESLDLSNNKFSGRIP 391 (517)
Q Consensus 375 ~L~~L~Ls~N~l~~~~p 391 (517)
.++.+.+..|.+....+
T Consensus 306 ~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 306 TLVTLTLELNPIRKISS 322 (414)
T ss_pred cccccccccCccccccc
Confidence 89999999998876544
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.95 E-value=5e-10 Score=80.12 Aligned_cols=61 Identities=39% Similarity=0.609 Sum_probs=51.6
Q ss_pred CCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcc
Q 036049 350 KGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYL 410 (517)
Q Consensus 350 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l 410 (517)
++|++|++++|+++...+..|..+++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4688889999988866667888889999999999998877778888899999999998875
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.93 E-value=8.7e-10 Score=78.86 Aligned_cols=60 Identities=28% Similarity=0.321 Sum_probs=38.5
Q ss_pred CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccc
Q 036049 114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNF 173 (517)
Q Consensus 114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l 173 (517)
+|++|++++|++....+..|.++++|++|++++|.++...+..|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 566666666666554445666666666666666666655556666666666666666653
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.87 E-value=9.2e-11 Score=108.92 Aligned_cols=193 Identities=19% Similarity=0.190 Sum_probs=128.8
Q ss_pred CCcEEEEEcCCCCcee----eeCCCcccccCCCCCEEEcCCCCCCC--CCCchhh-------hhcccCCcEEEccCCCCc
Q 036049 60 TGHVVKLNLSHSCLFG----SINSSSSLYKLVHLEWLNLALNDFNS--SEIQPEI-------INLSCSLKLLDLRSCGFW 126 (517)
Q Consensus 60 ~~~l~~L~Ls~n~l~~----~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~-------~~~~~~L~~L~Ls~n~l~ 126 (517)
...++.|+||+|.+.. .+.. .+.+.++|+..++|+-.... ..+|+.+ .... +|++||||.|.+.
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~--~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~-~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAK--VLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCP-KLQKLDLSDNAFG 105 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHH--HHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCC-ceeEeeccccccC
Confidence 3578999999998843 2223 56777889998888642211 1144433 2233 8999999999885
Q ss_pred ccCCcc----CCCCCCCcEEEccCCccccccc-------------ccccCCccccEEEccccccccc----CchhhhcCC
Q 036049 127 GKVPHS----IGNFTRLQFLYLGFNNFSGDLL-------------GSIGNLRSLEAIYMSKCNFSGQ----ITSSLRNLT 185 (517)
Q Consensus 127 ~~~p~~----~~~l~~L~~L~Ls~n~i~~~~p-------------~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~ 185 (517)
...+.. +..+..|++|+|.+|.+...-- ...++-+.|+++..++|++... +...|...+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 444433 3567889999999998762211 1233457899999999998632 334567778
Q ss_pred cccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcC
Q 036049 186 ELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRF 265 (517)
Q Consensus 186 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l 265 (517)
.|+.+.+..|.+...-. ..+...+.. +++|+.|||..|.++.. |......+++.+++|+.|++++|.+
T Consensus 186 ~leevr~~qN~I~~eG~--~al~eal~~--~~~LevLdl~DNtft~e--------gs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGV--TALAEALEH--CPHLEVLDLRDNTFTLE--------GSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred ccceEEEecccccCchh--HHHHHHHHh--CCcceeeecccchhhhH--------HHHHHHHHhcccchheeeccccccc
Confidence 99999999998752100 122333444 89999999999988754 2222233456678899999999988
Q ss_pred CC
Q 036049 266 TG 267 (517)
Q Consensus 266 ~~ 267 (517)
..
T Consensus 254 ~~ 255 (382)
T KOG1909|consen 254 EN 255 (382)
T ss_pred cc
Confidence 74
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.63 E-value=5.5e-10 Score=112.78 Aligned_cols=106 Identities=24% Similarity=0.302 Sum_probs=70.8
Q ss_pred hhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChh-ccCCCCCCeeeCCCCcccccCccccccCCCCCEE
Q 036049 325 PDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSC-LGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFF 403 (517)
Q Consensus 325 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 403 (517)
.+.++.|+|++|+++.. ..+..++.|++|||++|.+. .+|.. ...+ +|+.|+|++|.++.. ..+.++.+|+.|
T Consensus 186 l~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie~LksL~~L 259 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTTL--RGIENLKSLYGL 259 (1096)
T ss_pred HHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHhh--hhHHhhhhhhcc
Confidence 55677777777777643 25667788888888888887 45542 2233 488888888877733 356777888888
Q ss_pred eccCCcccccCC--CCCcCCccCCCcccCCCCCCC
Q 036049 404 NVSDNYLTGLIP--QGKQFATFDNTSFDGNSGLCG 436 (517)
Q Consensus 404 ~l~~N~l~~~~p--~~~~~~~l~~~~~~~Np~~c~ 436 (517)
|+++|-|.+.-. ....+..+..+.+.|||.-|.
T Consensus 260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred chhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 888887764422 123455566677888887773
No 43
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.62 E-value=4.3e-08 Score=64.10 Aligned_cols=42 Identities=40% Similarity=0.873 Sum_probs=29.6
Q ss_pred hHhHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCCCCCCCCcccceeecC
Q 036049 7 DDERSALLQFKESRISGDFYAWKFDCRPTMASWKPEEGNVDCCSWDGVHCN 57 (517)
Q Consensus 7 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~C~w~gv~c~ 57 (517)
++|++||++||+++..++ . ..+.+|+... ..+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~-~-------~~l~~W~~~~-~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDP-S-------GVLSSWNPSS-DSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC---------CCCTT--TT---S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhccccc-C-------cccccCCCcC-CCCCeeeccEEeC
Confidence 689999999999999643 2 3789998721 2799999999995
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.59 E-value=4.4e-08 Score=106.39 Aligned_cols=131 Identities=23% Similarity=0.259 Sum_probs=83.2
Q ss_pred cCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCC--CcccCCccCCCCCCCcEEEccCCcccccccccccCCcc
Q 036049 85 KLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCG--FWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRS 162 (517)
Q Consensus 85 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~ 162 (517)
+....+...+-+|.+.. ++... ... .|++|-+..|. +....++.|..++.|++|||++|.-.+.+|..++.|-+
T Consensus 521 ~~~~~rr~s~~~~~~~~--~~~~~-~~~-~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEH--IAGSS-ENP-KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred chhheeEEEEeccchhh--ccCCC-CCC-ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 34566666766666643 22221 222 67777777775 43333344677788888888877666677877887888
Q ss_pred ccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCc
Q 036049 163 LEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNL 228 (517)
Q Consensus 163 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 228 (517)
|++|++++..+. .+|..+++++.|.+|++..+.-.. .+|..... +++|++|.+..-.
T Consensus 597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~------~~~~i~~~--L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLE------SIPGILLE--LQSLRVLRLPRSA 653 (889)
T ss_pred hhcccccCCCcc-ccchHHHHHHhhheeccccccccc------cccchhhh--cccccEEEeeccc
Confidence 888888887777 677777777788877777664331 22222333 6677777665543
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=2.4e-08 Score=91.06 Aligned_cols=109 Identities=25% Similarity=0.212 Sum_probs=59.7
Q ss_pred CCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcc--cCCccCCCCCCCcEEEccCCcccccccccccCCccccEE
Q 036049 89 LEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWG--KVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAI 166 (517)
Q Consensus 89 L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L 166 (517)
++.|.+.+..|.....-..+....+.++.|||.+|.|+. .+...+.+|+.|+.|+|+.|.+...+-..-..+.+|++|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 334444455444332233344444467777777777632 233335667777777777777763222111345577777
Q ss_pred Ecccccccc-cCchhhhcCCcccccccccccC
Q 036049 167 YMSKCNFSG-QITSSLRNLTELVVLDMAQNSY 197 (517)
Q Consensus 167 ~L~~n~l~~-~~p~~l~~l~~L~~L~l~~N~l 197 (517)
-|.+..+.- .....+..+|.+++|+++.|.+
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 777766642 2334455666667776666643
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.47 E-value=6e-09 Score=105.47 Aligned_cols=176 Identities=22% Similarity=0.250 Sum_probs=105.7
Q ss_pred ccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCC--Cc-------ccCCccCCCCCCCcEEEccCCccccc
Q 036049 82 SLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCG--FW-------GKVPHSIGNFTRLQFLYLGFNNFSGD 152 (517)
Q Consensus 82 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~--l~-------~~~p~~~~~l~~L~~L~Ls~n~i~~~ 152 (517)
.+..++.|++|.|.++.+... ..+..+...|++|..++.- +. +.+..++. ...|...+.++|.+. .
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~---~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~-Wn~L~~a~fsyN~L~-~ 178 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTA---KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPV-WNKLATASFSYNRLV-L 178 (1096)
T ss_pred eeccccceeeEEecCcchhhh---hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchh-hhhHhhhhcchhhHH-h
Confidence 678899999999999988652 2333333355555433211 00 11111111 134666777777777 5
Q ss_pred ccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCccccc
Q 036049 153 LLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGF 232 (517)
Q Consensus 153 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 232 (517)
...++.-++.|+.|+|++|+++.. +.+..++.|++|||++|.+. .+|..-.. -..|+.|.+++|.++.+
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-------~vp~l~~~--gc~L~~L~lrnN~l~tL 247 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-------HVPQLSMV--GCKLQLLNLRNNALTTL 247 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-------cccccchh--hhhheeeeecccHHHhh
Confidence 556677777788888888877632 36777788888888888776 34432222 22377778888777765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCc
Q 036049 233 DQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASE 287 (517)
Q Consensus 233 ~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~ 287 (517)
.. +.++.+|+.||+++|-+.+.-.-..+..+..|+.|.+.+
T Consensus 248 ~g--------------ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 248 RG--------------IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEG 288 (1096)
T ss_pred hh--------------HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcC
Confidence 32 256777777777777776433223344455566666554
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.37 E-value=2.1e-08 Score=80.97 Aligned_cols=107 Identities=21% Similarity=0.194 Sum_probs=65.5
Q ss_pred EEEEEcCCCCceeeeCC-CcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcE
Q 036049 63 VVKLNLSHSCLFGSINS-SSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQF 141 (517)
Q Consensus 63 l~~L~Ls~n~l~~~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 141 (517)
.-.++|+.+.+-. ++. ...+....+|+..+|++|.+.. +|+.+....+.+++|+|++|.| ..+|..+..++.|+.
T Consensus 29 ~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk~--fp~kft~kf~t~t~lNl~~nei-sdvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 29 LHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFKK--FPKKFTIKFPTATTLNLANNEI-SDVPEELAAMPALRS 104 (177)
T ss_pred hhhcccccchhhH-HHHHHHHHhCCceEEEEecccchhhh--CCHHHhhccchhhhhhcchhhh-hhchHHHhhhHHhhh
Confidence 3455666665531 111 0123344556666777777765 6666655555677777777777 456666777777777
Q ss_pred EEccCCcccccccccccCCccccEEEccccccc
Q 036049 142 LYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFS 174 (517)
Q Consensus 142 L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~ 174 (517)
|++++|.+. ..|..|..|.+|..|+..+|.+.
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 777777776 45666666666777776666665
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.19 E-value=2e-07 Score=84.02 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=28.3
Q ss_pred CCCCCCCcEEEccCCccccccccc----ccCCccccEEEccccccc
Q 036049 133 IGNFTRLQFLYLGFNNFSGDLLGS----IGNLRSLEAIYMSKCNFS 174 (517)
Q Consensus 133 ~~~l~~L~~L~Ls~n~i~~~~p~~----~~~l~~L~~L~L~~n~l~ 174 (517)
+.+|++|+..+||.|.+....|.. +++-+.|++|.|++|.+.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 456777777777777776555543 345567777777777765
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.18 E-value=1.6e-07 Score=76.01 Aligned_cols=106 Identities=23% Similarity=0.333 Sum_probs=68.3
Q ss_pred CCCEEEcCCCCCCCCCCchhhhhcc--cCCcEEEccCCCCcccCCccCC-CCCCCcEEEccCCcccccccccccCCcccc
Q 036049 88 HLEWLNLALNDFNSSEIQPEIINLS--CSLKLLDLRSCGFWGKVPHSIG-NFTRLQFLYLGFNNFSGDLLGSIGNLRSLE 164 (517)
Q Consensus 88 ~L~~L~Ls~n~l~~~~~~~~~~~~~--~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~ 164 (517)
.+..+||+.+.+.. +++....+. ..|+..+|++|.+ ...|..|. ..+.++.|+|++|.|+ .+|..+..++.|+
T Consensus 28 E~h~ldLssc~lm~--i~davy~l~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr 103 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMY--IADAVYMLSKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALR 103 (177)
T ss_pred HhhhcccccchhhH--HHHHHHHHhCCceEEEEecccchh-hhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhh
Confidence 34556777776643 444433332 1566667777777 44555553 3446777777777777 5666677777777
Q ss_pred EEEcccccccccCchhhhcCCcccccccccccCc
Q 036049 165 AIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYG 198 (517)
Q Consensus 165 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~ 198 (517)
.|+++.|.+. ..|..+..+.++..|+..+|.+.
T Consensus 104 ~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 104 SLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 7777777776 55666666777777777777654
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.16 E-value=6.2e-07 Score=95.11 Aligned_cols=146 Identities=19% Similarity=0.271 Sum_probs=80.4
Q ss_pred CCcEEEccCCCCc-ccCCccC-CCCCCCcEEEccCCccccc-ccccccCCccccEEEcccccccccCchhhhcCCccccc
Q 036049 114 SLKLLDLRSCGFW-GKVPHSI-GNFTRLQFLYLGFNNFSGD-LLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVL 190 (517)
Q Consensus 114 ~L~~L~Ls~n~l~-~~~p~~~-~~l~~L~~L~Ls~n~i~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 190 (517)
+|++||+++.... ..-|..+ ..+|.|+.|.+++-.+... .-....++++|..||+++.+++.. ..++.+++|++|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 6777777765431 1112222 2467777777777655422 222345667777777777777633 566777777777
Q ss_pred ccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCC
Q 036049 191 DMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLP 270 (517)
Q Consensus 191 ~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 270 (517)
.+.+-.+... ..-..++. +++|+.||+|............. ...-...+|+|+.||.|++.+.+.+-
T Consensus 201 ~mrnLe~e~~-----~~l~~LF~--L~~L~vLDIS~~~~~~~~~ii~q------Ylec~~~LpeLrfLDcSgTdi~~~~l 267 (699)
T KOG3665|consen 201 SMRNLEFESY-----QDLIDLFN--LKKLRVLDISRDKNNDDTKIIEQ------YLECGMVLPELRFLDCSGTDINEEIL 267 (699)
T ss_pred hccCCCCCch-----hhHHHHhc--ccCCCeeeccccccccchHHHHH------HHHhcccCccccEEecCCcchhHHHH
Confidence 7766555421 11123444 77777777777654433210000 00011347788888888877765444
Q ss_pred hhhh
Q 036049 271 SKSF 274 (517)
Q Consensus 271 ~~~~ 274 (517)
+...
T Consensus 268 e~ll 271 (699)
T KOG3665|consen 268 EELL 271 (699)
T ss_pred HHHH
Confidence 3333
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=4.7e-07 Score=82.77 Aligned_cols=185 Identities=16% Similarity=0.162 Sum_probs=89.4
Q ss_pred cCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCccccccc-ccccCCccc
Q 036049 85 KLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLL-GSIGNLRSL 163 (517)
Q Consensus 85 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p-~~~~~l~~L 163 (517)
..++++.|||.+|.|+.-.--..+....+.|++|+++.|.+...+-..=..+.+|++|-|.+..+.-.-. ..+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 3556666677777665411112223333366777777666643222111345566666666666543222 223456666
Q ss_pred cEEEcccccccccCc--h----------hhhc-----------------CCcccccccccccCcceeccccccccccccc
Q 036049 164 EAIYMSKCNFSGQIT--S----------SLRN-----------------LTELVVLDMAQNSYGGTMEIEGKVHKWLLDP 214 (517)
Q Consensus 164 ~~L~L~~n~l~~~~p--~----------~l~~-----------------l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 214 (517)
++|.++.|.+....- . .+.. ++++..+.+..|.+.....- +.. .
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~e-----k~s--e 221 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSE-----KGS--E 221 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhc-----ccC--C
Confidence 666666663321000 0 0111 23333333444433311110 011 1
Q ss_pred cCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChh-----hhhcccccceeccCc
Q 036049 215 NMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSK-----SFLCWNAMKIVNASE 287 (517)
Q Consensus 215 ~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-----~~~~l~~L~~L~l~~ 287 (517)
.++.+..|+|+.|+|.+.... .++.+++.|+.|.+++|.+...+... ..+.+++++.|+-+.
T Consensus 222 ~~p~~~~LnL~~~~idswasv-----------D~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGsk 288 (418)
T KOG2982|consen 222 PFPSLSCLNLGANNIDSWASV-----------DALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSK 288 (418)
T ss_pred CCCcchhhhhcccccccHHHH-----------HHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCcc
Confidence 155566677777776554221 23467788888888888776443221 224455555555443
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.04 E-value=1.7e-05 Score=77.93 Aligned_cols=56 Identities=18% Similarity=0.193 Sum_probs=29.8
Q ss_pred CCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccc
Q 036049 134 GNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQN 195 (517)
Q Consensus 134 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N 195 (517)
..+.+++.|++++|.++ .+|. + -.+|++|.+++|.--..+|+.+. ++|+.|++++|
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 34566777777777666 3441 1 13577777766433234444331 34555555554
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=3.1e-06 Score=55.39 Aligned_cols=36 Identities=50% Similarity=0.753 Sum_probs=19.2
Q ss_pred CCCeEeCcCccccccCChhccCCCCCCeeeCCCCccc
Q 036049 351 GLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 387 (517)
Q Consensus 351 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 387 (517)
+|++|++++|+|+ .+|..++++++|+.|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555666666665 34444555566666666665555
No 54
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=1.3e-07 Score=86.45 Aligned_cols=179 Identities=18% Similarity=0.145 Sum_probs=102.6
Q ss_pred cccEEEcccccccc-cCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCc-ccccCCCCCCC
Q 036049 162 SLEAIYMSKCNFSG-QITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNL-LTGFDQHLVLL 239 (517)
Q Consensus 162 ~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ll 239 (517)
.|++|||++..|+. .+-..+..+.+|+.|.+.++++.. .+-..+.+ -.+|+.|+++.+. ++.....
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD------~I~~~iAk--N~~L~~lnlsm~sG~t~n~~~---- 253 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD------PIVNTIAK--NSNLVRLNLSMCSGFTENALQ---- 253 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc------HHHHHHhc--cccceeeccccccccchhHHH----
Confidence 47777777777652 233445667777777777777763 34444444 6777788777653 3321110
Q ss_pred CCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccc
Q 036049 240 PGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMM 319 (517)
Q Consensus 240 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (517)
..+..++.|..|+++.+.+....-.....
T Consensus 254 -------ll~~scs~L~~LNlsWc~l~~~~Vtv~V~-------------------------------------------- 282 (419)
T KOG2120|consen 254 -------LLLSSCSRLDELNLSWCFLFTEKVTVAVA-------------------------------------------- 282 (419)
T ss_pred -------HHHHhhhhHhhcCchHhhccchhhhHHHh--------------------------------------------
Confidence 12345667777777777665322111110
Q ss_pred cCCCchhhhhhhhCCCCCC--c-ccCcccccCCCCCCeEeCcCcc-ccccCChhccCCCCCCeeeCCCCcccccCccc--
Q 036049 320 AYNKIPDILAGIILSNKSF--D-GAIPASISNLKGLQVLNLHNNN-LQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQ-- 393 (517)
Q Consensus 320 ~~~~~~~~L~~L~Ls~n~l--~-~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-- 393 (517)
.+.+.|+.|+++++.- . ..+..-...+++|.+||||.|. ++......|..++.|++|.++.|.. .+|..
T Consensus 283 ---hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~ 357 (419)
T KOG2120|consen 283 ---HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLL 357 (419)
T ss_pred ---hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHee
Confidence 1123344444443311 0 0111123457888889988874 4433444566788888888888854 45543
Q ss_pred -cccCCCCCEEeccCC
Q 036049 394 -LVELTFLAFFNVSDN 408 (517)
Q Consensus 394 -l~~l~~L~~L~l~~N 408 (517)
+...|+|.+|++.++
T Consensus 358 ~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 358 ELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeccCcceEEEEeccc
Confidence 456788999988765
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=5.4e-06 Score=54.26 Aligned_cols=36 Identities=33% Similarity=0.404 Sum_probs=16.2
Q ss_pred CCcEEEccCCcccccccccccCCccccEEEccccccc
Q 036049 138 RLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFS 174 (517)
Q Consensus 138 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~ 174 (517)
+|++|++++|+|+ .+|..+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444555555554 23334445555555555555444
No 56
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=1.1e-07 Score=86.87 Aligned_cols=86 Identities=21% Similarity=0.250 Sum_probs=44.1
Q ss_pred CCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCc-cccc-ccccccCCccccE
Q 036049 88 HLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNN-FSGD-LLGSIGNLRSLEA 165 (517)
Q Consensus 88 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-i~~~-~p~~~~~l~~L~~ 165 (517)
.|++||||+..|+..++..-+..+. +|+.|.+.++++...+...+++-.+|+.|+|+.+. ++.. ..--+.+++.|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~-kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCS-KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHH-hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3566666666555433333333444 56666666666655555555555666666665532 2211 0111345556666
Q ss_pred EEccccccc
Q 036049 166 IYMSKCNFS 174 (517)
Q Consensus 166 L~L~~n~l~ 174 (517)
|+++.|.+.
T Consensus 265 LNlsWc~l~ 273 (419)
T KOG2120|consen 265 LNLSWCFLF 273 (419)
T ss_pred cCchHhhcc
Confidence 666666554
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.99 E-value=9.3e-06 Score=70.44 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=29.2
Q ss_pred CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEccccccc
Q 036049 114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFS 174 (517)
Q Consensus 114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~ 174 (517)
+...+||++|.+ ..++ .|..++.|.+|.|.+|+|+.+.|.--..+++|+.|.|.+|+|.
T Consensus 43 ~~d~iDLtdNdl-~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 43 QFDAIDLTDNDL-RKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred ccceecccccch-hhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 445555555555 2222 3455555555555555555444433333445555555555543
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.92 E-value=1.7e-05 Score=68.90 Aligned_cols=110 Identities=16% Similarity=0.133 Sum_probs=69.2
Q ss_pred CCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccC
Q 036049 137 TRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNM 216 (517)
Q Consensus 137 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l 216 (517)
.+...+||++|.+.. -+.|..++.|.+|.|++|+|+.+-|.--.-+++|+.|.+.+|++.....+. .+.. +
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~-----pLa~--~ 112 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLD-----PLAS--C 112 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcc-----hhcc--C
Confidence 456677788877763 334667777888888888887655554455677788888887776211111 1122 6
Q ss_pred CCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCc
Q 036049 217 QNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNR 264 (517)
Q Consensus 217 ~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (517)
+.|++|.+-+|.++.....- ...+..+|+|++||++.-.
T Consensus 113 p~L~~Ltll~Npv~~k~~YR---------~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 113 PKLEYLTLLGNPVEHKKNYR---------LYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CccceeeecCCchhcccCce---------eEEEEecCcceEeehhhhh
Confidence 77888888887776643321 1124667788888877644
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.83 E-value=7e-05 Score=73.59 Aligned_cols=135 Identities=16% Similarity=0.174 Sum_probs=71.3
Q ss_pred cCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCC-cccccccccccCCccc
Q 036049 85 KLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFN-NFSGDLLGSIGNLRSL 163 (517)
Q Consensus 85 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n-~i~~~~p~~~~~l~~L 163 (517)
.+.+++.|++++|.++. +| .++++|++|++++|.-...+|+.+. .+|++|++++| .+. .+|. +|
T Consensus 50 ~~~~l~~L~Is~c~L~s--LP----~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sL 114 (426)
T PRK15386 50 EARASGRLYIKDCDIES--LP----VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SV 114 (426)
T ss_pred HhcCCCEEEeCCCCCcc--cC----CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------cc
Confidence 35667777777776665 44 2344677777776544455565442 56777777776 443 3443 45
Q ss_pred cEEEccccccc--ccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCC
Q 036049 164 EAIYMSKCNFS--GQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPG 241 (517)
Q Consensus 164 ~~L~L~~n~l~--~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~ 241 (517)
+.|+++.+... +.+|. +|+.|.+.+++... ...+|..+ .++|++|++++|.....+..
T Consensus 115 e~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~----~~~lp~~L----PsSLk~L~Is~c~~i~LP~~------ 174 (426)
T PRK15386 115 RSLEIKGSATDSIKNVPN------GLTSLSINSYNPEN----QARIDNLI----SPSLKTLSLTGCSNIILPEK------ 174 (426)
T ss_pred ceEEeCCCCCcccccCcc------hHhheecccccccc----cccccccc----CCcccEEEecCCCcccCccc------
Confidence 66666655432 12332 35555554322100 00111100 25677888877765433211
Q ss_pred CCCCCCCCCCCCcccEEEccCC
Q 036049 242 NNEEPRTGCGFSKLRIIDLSDN 263 (517)
Q Consensus 242 ~~~~~~~~~~l~~L~~L~Ls~N 263 (517)
-..+|+.|+++.+
T Consensus 175 ---------LP~SLk~L~ls~n 187 (426)
T PRK15386 175 ---------LPESLQSITLHIE 187 (426)
T ss_pred ---------ccccCcEEEeccc
Confidence 1246777777765
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.75 E-value=6.3e-06 Score=74.60 Aligned_cols=69 Identities=20% Similarity=0.128 Sum_probs=48.4
Q ss_pred ccCCCCCCeEeCcCccccccC----ChhccCCCCCCeeeCCCCcccccCccc----c--ccCCCCCEEeccCCcccccC
Q 036049 346 ISNLKGLQVLNLHNNNLQGHI----PSCLGNLTNLESLDLSNNKFSGRIPQQ----L--VELTFLAFFNVSDNYLTGLI 414 (517)
Q Consensus 346 ~~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l~~~~p~~----l--~~l~~L~~L~l~~N~l~~~~ 414 (517)
+..+.+|+.|||..|-++..- ...+...+.|+.|.+..|-++..-..+ | ...|+|+.|...+|.+.+-+
T Consensus 210 l~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~ 288 (388)
T COG5238 210 LFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGI 288 (388)
T ss_pred HHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCce
Confidence 345688999999999887322 234455677899999999887543322 2 13578999999999877554
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.53 E-value=3e-05 Score=82.53 Aligned_cols=143 Identities=21% Similarity=0.219 Sum_probs=100.6
Q ss_pred CCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcc-cCCccCCCCCCCcEEEccCCcccccccccccCCcccc
Q 036049 86 LVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWG-KVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLE 164 (517)
Q Consensus 86 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~ 164 (517)
-.+|++||+++...-...-|..++.+.|.|+.|.+++-.+.. ..-....++++|..||+|+++++.. ..++.|++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence 457899999887654444667788888899999998866622 1223356789999999999999843 6788999999
Q ss_pred EEEcccccccc-cCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCccccc
Q 036049 165 AIYMSKCNFSG-QITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGF 232 (517)
Q Consensus 165 ~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 232 (517)
+|.+.+=.+.. ..-..+.+|++|++||+|.........+....-+.-. .+++|+.||.|++.+...
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~--~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGM--VLPELRFLDCSGTDINEE 265 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcc--cCccccEEecCCcchhHH
Confidence 99988877653 2234677899999999998765532211111111111 288999999998877653
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.08 E-value=0.00018 Score=65.30 Aligned_cols=65 Identities=23% Similarity=0.236 Sum_probs=29.6
Q ss_pred CCCCCCCcEEEccCC--cccccccccccCCccccEEEccccccccc-CchhhhcCCcccccccccccC
Q 036049 133 IGNFTRLQFLYLGFN--NFSGDLLGSIGNLRSLEAIYMSKCNFSGQ-ITSSLRNLTELVVLDMAQNSY 197 (517)
Q Consensus 133 ~~~l~~L~~L~Ls~n--~i~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~l~~N~l 197 (517)
|-.|++|++|.++.| ++.+.++....++++|++|++++|++... --..+..+.+|..|++..|..
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCc
Confidence 344555555555555 44433333334445555555555555410 001123344444555554443
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=4.2e-05 Score=69.65 Aligned_cols=100 Identities=27% Similarity=0.273 Sum_probs=50.0
Q ss_pred CCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccc-cccccCCcccc
Q 036049 86 LVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDL-LGSIGNLRSLE 164 (517)
Q Consensus 86 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~-p~~~~~l~~L~ 164 (517)
+.+.+.|++.++.+++. .+..-++.|++|.|+-|+|+..-| |..+++|++|+|..|.|.... -..+.++++|+
T Consensus 18 l~~vkKLNcwg~~L~DI----sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI----SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCccHH----HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 33445555555555442 223222356666666666543322 455666666666666655311 12244566666
Q ss_pred EEEcccccccccCch-----hhhcCCcccccc
Q 036049 165 AIYMSKCNFSGQITS-----SLRNLTELVVLD 191 (517)
Q Consensus 165 ~L~L~~n~l~~~~p~-----~l~~l~~L~~L~ 191 (517)
.|.|..|.-.+.-+. .+.-+++|+.||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 666666654433332 234455555554
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.96 E-value=0.0029 Score=52.58 Aligned_cols=59 Identities=14% Similarity=0.111 Sum_probs=20.5
Q ss_pred CCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccc
Q 036049 133 IGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMA 193 (517)
Q Consensus 133 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 193 (517)
|.++++|+.+.+.. .+.......|..+++|+.+.+.++ +.......|.++++|+.+.+.
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 44444444444442 233333334444444555544443 332333344444444444443
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.93 E-value=0.0036 Score=52.00 Aligned_cols=100 Identities=15% Similarity=0.147 Sum_probs=36.5
Q ss_pred cEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcE
Q 036049 62 HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQF 141 (517)
Q Consensus 62 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 141 (517)
+++.+.+.. .+...... +|..+++|+.+.+..+ +.. ++...+....+|+.+.+.+ .+.......|..+++|+.
T Consensus 13 ~l~~i~~~~-~~~~I~~~--~F~~~~~l~~i~~~~~-~~~--i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGEN--AFSNCTSLKSINFPNN-LTS--IGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp T--EEEETS-T--EE-TT--TTTT-TT-SEEEESST-TSC--E-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred CCCEEEECC-CeeEeChh--hccccccccccccccc-ccc--cceeeeecccccccccccc-cccccccccccccccccc
Confidence 445555543 33333333 4555555555555543 332 3333333322455555543 222222334445555555
Q ss_pred EEccCCcccccccccccCCccccEEEccc
Q 036049 142 LYLGFNNFSGDLLGSIGNLRSLEAIYMSK 170 (517)
Q Consensus 142 L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~ 170 (517)
+++..+ +.......|.+. +|+.+.+..
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 555443 333333444444 555555443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.93 E-value=0.00044 Score=62.82 Aligned_cols=77 Identities=22% Similarity=0.261 Sum_probs=37.4
Q ss_pred CCcEEEccCC--CCcccCCccCCCCCCCcEEEccCCccccccccc---ccCCccccEEEcccccccccCc---hhhhcCC
Q 036049 114 SLKLLDLRSC--GFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGS---IGNLRSLEAIYMSKCNFSGQIT---SSLRNLT 185 (517)
Q Consensus 114 ~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~---~~~l~~L~~L~L~~n~l~~~~p---~~l~~l~ 185 (517)
+|+.|.++.| ++.+.++.....+++|++|++++|+|.. +.+ +..+.+|..|++.+|..+..-- ..|.-++
T Consensus 66 ~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~ 143 (260)
T KOG2739|consen 66 KLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLP 143 (260)
T ss_pred hhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHHHHHHhh
Confidence 5555555555 3333333333344555555665555542 222 3345556667776666553111 2344455
Q ss_pred ccccccc
Q 036049 186 ELVVLDM 192 (517)
Q Consensus 186 ~L~~L~l 192 (517)
+|++||-
T Consensus 144 ~L~~LD~ 150 (260)
T KOG2739|consen 144 SLKYLDG 150 (260)
T ss_pred hhccccc
Confidence 5555543
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.00016 Score=65.94 Aligned_cols=57 Identities=18% Similarity=0.086 Sum_probs=27.4
Q ss_pred CCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCc
Q 036049 138 RLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYG 198 (517)
Q Consensus 138 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~ 198 (517)
+.+.|++.++.+.++ .-..+|+.|++|.|+-|.|+..- .|..+++|++|+|..|.|.
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~ 76 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE 76 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc
Confidence 344445555544421 12334555555555555555322 2445555555555555443
No 68
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.40 E-value=0.00012 Score=70.38 Aligned_cols=64 Identities=25% Similarity=0.179 Sum_probs=38.6
Q ss_pred cCCCCCCeEeCcCccccccC-----ChhccCCCCCCeeeCCCCcccc-cCccccccCCCCCEEeccCCcc
Q 036049 347 SNLKGLQVLNLHNNNLQGHI-----PSCLGNLTNLESLDLSNNKFSG-RIPQQLVELTFLAFFNVSDNYL 410 (517)
Q Consensus 347 ~~l~~L~~L~Ls~N~l~~~~-----p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~l~~N~l 410 (517)
.+++.|++|.|+++.+-... ...-..+..|+.+.|+++.... ..-+.+...++|+.+++-+++-
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 35677888888877543111 1122346678888888876542 2334456667788877777653
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.77 E-value=0.0046 Score=33.56 Aligned_cols=12 Identities=42% Similarity=0.620 Sum_probs=5.3
Q ss_pred CcEEEccCCccc
Q 036049 139 LQFLYLGFNNFS 150 (517)
Q Consensus 139 L~~L~Ls~n~i~ 150 (517)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.54 E-value=0.0054 Score=33.27 Aligned_cols=19 Identities=47% Similarity=0.749 Sum_probs=9.3
Q ss_pred CCeEeCcCccccccCChhcc
Q 036049 352 LQVLNLHNNNLQGHIPSCLG 371 (517)
Q Consensus 352 L~~L~Ls~N~l~~~~p~~l~ 371 (517)
|++|||++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4444343
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.24 E-value=0.00023 Score=72.54 Aligned_cols=61 Identities=28% Similarity=0.388 Sum_probs=37.8
Q ss_pred hhhhhCCCCCCccc----CcccccCC-CCCCeEeCcCccccccC----ChhccCCCCCCeeeCCCCcccc
Q 036049 328 LAGIILSNKSFDGA----IPASISNL-KGLQVLNLHNNNLQGHI----PSCLGNLTNLESLDLSNNKFSG 388 (517)
Q Consensus 328 L~~L~Ls~n~l~~~----~p~~~~~l-~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l~~ 388 (517)
+..+++..|.+.+. ..+.+..+ ..+++++++.|.|+..- ...+..++.++.|.+++|.+..
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 45567777766532 22334444 56777888888776433 3344566777888888887764
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.93 E-value=0.00022 Score=72.73 Aligned_cols=87 Identities=28% Similarity=0.383 Sum_probs=59.9
Q ss_pred hhhhhhhCCCCCCccc----CcccccCCCC-CCeEeCcCcccccc----CChhccCC-CCCCeeeCCCCccccc----Cc
Q 036049 326 DILAGIILSNKSFDGA----IPASISNLKG-LQVLNLHNNNLQGH----IPSCLGNL-TNLESLDLSNNKFSGR----IP 391 (517)
Q Consensus 326 ~~L~~L~Ls~n~l~~~----~p~~~~~l~~-L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~Ls~N~l~~~----~p 391 (517)
..+++|.+++|.++.. +...+...+. +..|++++|++.+. ....+..+ ..++.++++.|.|+.. +.
T Consensus 204 ~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~ 283 (478)
T KOG4308|consen 204 SSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLA 283 (478)
T ss_pred ccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHH
Confidence 4466666666665521 1123344455 77799999998743 23345555 7889999999999864 34
Q ss_pred cccccCCCCCEEeccCCcccc
Q 036049 392 QQLVELTFLAFFNVSDNYLTG 412 (517)
Q Consensus 392 ~~l~~l~~L~~L~l~~N~l~~ 412 (517)
..+...+.++.+.+++|++..
T Consensus 284 ~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 284 EVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHhhhHHHHHhhcccCcccc
Confidence 556667899999999999863
No 73
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=94.44 E-value=0.0049 Score=59.78 Aligned_cols=86 Identities=19% Similarity=0.184 Sum_probs=35.3
Q ss_pred CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCC-CCCCCchhhhhcccCCcEEEccCCCC-cccCCc-cCCCCC
Q 036049 61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDF-NSSEIQPEIINLSCSLKLLDLRSCGF-WGKVPH-SIGNFT 137 (517)
Q Consensus 61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~p~-~~~~l~ 137 (517)
+.++.|.+.+..-.+.-+.-....++++++.|++.+... ++. .-..+....++|++|++..|.. +...-. ....++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~-s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDS-SLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHH-HHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 345555555554333222212334455555555555432 211 1122333333555555555332 111111 123445
Q ss_pred CCcEEEccCC
Q 036049 138 RLQFLYLGFN 147 (517)
Q Consensus 138 ~L~~L~Ls~n 147 (517)
+|++|+++++
T Consensus 217 kL~~lNlSwc 226 (483)
T KOG4341|consen 217 KLKYLNLSWC 226 (483)
T ss_pred hHHHhhhccC
Confidence 5555555554
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.42 E-value=0.00096 Score=59.44 Aligned_cols=57 Identities=18% Similarity=-0.029 Sum_probs=26.1
Q ss_pred CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEccccc
Q 036049 114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCN 172 (517)
Q Consensus 114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~ 172 (517)
.|..|+++.|.+ ...|..++.+..++.+++..|..+ ..|.+++++++++++++..|.
T Consensus 66 ~~~rl~~sknq~-~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 66 RLVRLDLSKNQI-KFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred HHHHHhccHhhH-hhChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCc
Confidence 444444444444 334444444444444444444444 344444444444444444444
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.78 E-value=0.073 Score=26.72 Aligned_cols=13 Identities=62% Similarity=0.968 Sum_probs=5.3
Q ss_pred cccEEEccCCcCC
Q 036049 254 KLRIIDLSDNRFT 266 (517)
Q Consensus 254 ~L~~L~Ls~N~l~ 266 (517)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.16 E-value=0.16 Score=28.67 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=13.7
Q ss_pred CCCCCEEEcCCCCCCCCCCchhhh
Q 036049 86 LVHLEWLNLALNDFNSSEIQPEII 109 (517)
Q Consensus 86 l~~L~~L~Ls~n~l~~~~~~~~~~ 109 (517)
+++|++|+|++|+++. +|+..+
T Consensus 1 L~~L~~L~L~~N~l~~--lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSS--LPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCc--CCHHHc
Confidence 3466777777777665 565544
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.16 E-value=0.16 Score=28.67 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=13.7
Q ss_pred CCCCCEEEcCCCCCCCCCCchhhh
Q 036049 86 LVHLEWLNLALNDFNSSEIQPEII 109 (517)
Q Consensus 86 l~~L~~L~Ls~n~l~~~~~~~~~~ 109 (517)
+++|++|+|++|+++. +|+..+
T Consensus 1 L~~L~~L~L~~N~l~~--lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSS--LPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCc--CCHHHc
Confidence 3466777777777665 565544
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.14 E-value=0.14 Score=28.84 Aligned_cols=22 Identities=41% Similarity=0.748 Sum_probs=15.4
Q ss_pred CcccEEEccCCcCCCCCChhhhh
Q 036049 253 SKLRIIDLSDNRFTGKLPSKSFL 275 (517)
Q Consensus 253 ~~L~~L~Ls~N~l~~~~p~~~~~ 275 (517)
++|++|+|++|++. .+|...|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHcc
Confidence 46777888888777 67766553
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.14 E-value=0.14 Score=28.84 Aligned_cols=22 Identities=41% Similarity=0.748 Sum_probs=15.4
Q ss_pred CcccEEEccCCcCCCCCChhhhh
Q 036049 253 SKLRIIDLSDNRFTGKLPSKSFL 275 (517)
Q Consensus 253 ~~L~~L~Ls~N~l~~~~p~~~~~ 275 (517)
++|++|+|++|++. .+|...|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHcc
Confidence 46777888888777 67766553
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.05 E-value=0.0078 Score=53.81 Aligned_cols=63 Identities=21% Similarity=0.224 Sum_probs=29.5
Q ss_pred CCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCc
Q 036049 134 GNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYG 198 (517)
Q Consensus 134 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~ 198 (517)
......+.||++.|++. .+-..|+.++.|..|+++.|.+. ..|..++.+..+..+++..|..+
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~ 101 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS 101 (326)
T ss_pred hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh
Confidence 33344444555544444 23334444445555555555544 44445555444555544444443
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.17 E-value=0.11 Score=28.69 Aligned_cols=13 Identities=31% Similarity=0.342 Sum_probs=5.0
Q ss_pred CCcEEEccCCccc
Q 036049 138 RLQFLYLGFNNFS 150 (517)
Q Consensus 138 ~L~~L~Ls~n~i~ 150 (517)
+|++|+|++|.|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4444444444444
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.83 E-value=0.064 Score=47.16 Aligned_cols=35 Identities=20% Similarity=0.139 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCC
Q 036049 62 HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALND 98 (517)
Q Consensus 62 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~ 98 (517)
.|+.+|-++..|...--+ .+.+++.++.|.+.++.
T Consensus 102 ~IeaVDAsds~I~~eGle--~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLE--HLRDLRSIKSLSLANCK 136 (221)
T ss_pred eEEEEecCCchHHHHHHH--HHhccchhhhheecccc
Confidence 467777777766543222 45555555566555554
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.63 E-value=0.071 Score=46.90 Aligned_cols=80 Identities=21% Similarity=0.212 Sum_probs=41.3
Q ss_pred hhhhhCCCCCCcccCcccccCCCCCCeEeCcCcccc-ccCChhcc-CCCCCCeeeCCCC-cccccCccccccCCCCCEEe
Q 036049 328 LAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQ-GHIPSCLG-NLTNLESLDLSNN-KFSGRIPQQLVELTFLAFFN 404 (517)
Q Consensus 328 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~-~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~ 404 (517)
++.+|-++..|..+--+.+.+++.++.|.+.+|.-- +.--+.++ -.++|+.|+|++| +|+..--..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 455566666655544455556666666666665321 10001111 2356677777766 45543334455566666665
Q ss_pred ccC
Q 036049 405 VSD 407 (517)
Q Consensus 405 l~~ 407 (517)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 544
No 84
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=83.46 E-value=0.49 Score=48.97 Aligned_cols=110 Identities=20% Similarity=0.108 Sum_probs=55.9
Q ss_pred CCcEEEccCCCCccc--CCccCCCCCCCcEEEccCC-cccccc----cccccCCccccEEEccccc-ccccCchhhhc-C
Q 036049 114 SLKLLDLRSCGFWGK--VPHSIGNFTRLQFLYLGFN-NFSGDL----LGSIGNLRSLEAIYMSKCN-FSGQITSSLRN-L 184 (517)
Q Consensus 114 ~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~n-~i~~~~----p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~-l 184 (517)
.|+.|.+..+.-... .-.....+++|+.|+++++ ...... ......+++|+.|+++.+. ++...-..+.. +
T Consensus 189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c 268 (482)
T KOG1947|consen 189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRC 268 (482)
T ss_pred hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhC
Confidence 666666666543222 1223455677777777652 111111 1122345677777777776 44333333332 5
Q ss_pred Cccccccccccc-CcceeccccccccccccccCCCCCeEeccCCccc
Q 036049 185 TELVVLDMAQNS-YGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLT 230 (517)
Q Consensus 185 ~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 230 (517)
++|++|.+..+. ++.. .+-..... +++|++|+++++...
T Consensus 269 ~~L~~L~l~~c~~lt~~-----gl~~i~~~--~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 269 PNLETLSLSNCSNLTDE-----GLVSIAER--CPSLRELDLSGCHGL 308 (482)
T ss_pred CCcceEccCCCCccchh-----HHHHHHHh--cCcccEEeeecCccc
Confidence 677777765554 3310 11111222 677888888776543
No 85
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=83.21 E-value=1.5 Score=27.02 Aligned_cols=18 Identities=11% Similarity=0.060 Sum_probs=8.4
Q ss_pred hhhhHHHHHHHHHHHHhh
Q 036049 475 GYAGGLVAGLVLGFNFST 492 (517)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~ 492 (517)
++++++++++++.++++.
T Consensus 7 aIIv~V~vg~~iiii~~~ 24 (38)
T PF02439_consen 7 AIIVAVVVGMAIIIICMF 24 (38)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 444455555544444443
No 86
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=79.44 E-value=1.9 Score=38.20 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=13.4
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHhh
Q 036049 468 DWKIILIGYAGGLVAGLVLGFNFST 492 (517)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (517)
.+..|++++++|++.++++++++++
T Consensus 35 d~~~I~iaiVAG~~tVILVI~i~v~ 59 (221)
T PF08374_consen 35 DYVKIMIAIVAGIMTVILVIFIVVL 59 (221)
T ss_pred cceeeeeeeecchhhhHHHHHHHHH
Confidence 3555666666665555544444444
No 87
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=77.45 E-value=0.69 Score=47.83 Aligned_cols=114 Identities=23% Similarity=0.078 Sum_probs=71.6
Q ss_pred CCCCCcEEEccCCccccc--ccccccCCccccEEEcccc-cccccC----chhhhcCCccccccccccc-Ccceeccccc
Q 036049 135 NFTRLQFLYLGFNNFSGD--LLGSIGNLRSLEAIYMSKC-NFSGQI----TSSLRNLTELVVLDMAQNS-YGGTMEIEGK 206 (517)
Q Consensus 135 ~l~~L~~L~Ls~n~i~~~--~p~~~~~l~~L~~L~L~~n-~l~~~~----p~~l~~l~~L~~L~l~~N~-l~~~~~~~~~ 206 (517)
.++.|+.|.+..+.-... .-.....++.|+.|+++++ ...... ......+++|+.|+++... ++. .
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd------~ 259 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD------I 259 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc------h
Confidence 468889998887743322 2344567899999999873 221111 1234456889999999887 331 1
Q ss_pred cccccccccCCCCCeEeccCCc-ccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCC
Q 036049 207 VHKWLLDPNMQNLNALNLSHNL-LTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFT 266 (517)
Q Consensus 207 ~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (517)
.-..+.. .+++|++|.+.++. ++...-.. ....+++|++|+++++...
T Consensus 260 ~l~~l~~-~c~~L~~L~l~~c~~lt~~gl~~-----------i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 260 GLSALAS-RCPNLETLSLSNCSNLTDEGLVS-----------IAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hHHHHHh-hCCCcceEccCCCCccchhHHHH-----------HHHhcCcccEEeeecCccc
Confidence 1112221 27889999987776 54431110 1256788999999988764
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=77.38 E-value=1.8 Score=24.41 Aligned_cols=14 Identities=71% Similarity=0.900 Sum_probs=8.1
Q ss_pred CCCCeeeCCCCccc
Q 036049 374 TNLESLDLSNNKFS 387 (517)
Q Consensus 374 ~~L~~L~Ls~N~l~ 387 (517)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45566666666554
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=74.77 E-value=1.3 Score=53.75 Aligned_cols=35 Identities=29% Similarity=0.173 Sum_probs=24.5
Q ss_pred eCCCCcccccCccccccCCCCCEEeccCCcccccC
Q 036049 380 DLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLI 414 (517)
Q Consensus 380 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 414 (517)
||++|+|+...+..|..+++|+.|+|++|++.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC 35 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDC 35 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccccc
Confidence 57788887656666777777777777766666543
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=74.45 E-value=2.1 Score=24.16 Aligned_cols=13 Identities=38% Similarity=0.746 Sum_probs=6.1
Q ss_pred CCCeeeCCCCccc
Q 036049 375 NLESLDLSNNKFS 387 (517)
Q Consensus 375 ~L~~L~Ls~N~l~ 387 (517)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3444444444444
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=70.46 E-value=26 Score=35.42 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=11.5
Q ss_pred cccEEEccCCcCCCCCC
Q 036049 254 KLRIIDLSDNRFTGKLP 270 (517)
Q Consensus 254 ~L~~L~Ls~N~l~~~~p 270 (517)
.+++|+...|.+.|..-
T Consensus 355 R~q~l~~rdnnldgeg~ 371 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGG 371 (553)
T ss_pred eeeEeeccccccccccc
Confidence 47777777777766543
No 92
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=70.01 E-value=7 Score=37.34 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=8.5
Q ss_pred hhhhhhhHHHHHHHHHHHHhh
Q 036049 472 ILIGYAGGLVAGLVLGFNFST 492 (517)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~ 492 (517)
|..++++.+++++|+++++++
T Consensus 258 I~aSiiaIliIVLIMvIIYLI 278 (299)
T PF02009_consen 258 IIASIIAILIIVLIMVIIYLI 278 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 93
>PF15050 SCIMP: SCIMP protein
Probab=67.67 E-value=6.8 Score=31.07 Aligned_cols=11 Identities=18% Similarity=0.323 Sum_probs=4.9
Q ss_pred HHHHHHHHhhh
Q 036049 495 IGWILEKLGRQ 505 (517)
Q Consensus 495 ~~~~~~~~~~~ 505 (517)
.+|.++.-+++
T Consensus 31 cR~~lRqGkkw 41 (133)
T PF15050_consen 31 CRWQLRQGKKW 41 (133)
T ss_pred HHHHHHccccc
Confidence 34555443333
No 94
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=67.30 E-value=4.1 Score=23.37 Aligned_cols=14 Identities=57% Similarity=0.802 Sum_probs=8.9
Q ss_pred CCCCeeeCCCCccc
Q 036049 374 TNLESLDLSNNKFS 387 (517)
Q Consensus 374 ~~L~~L~Ls~N~l~ 387 (517)
++|++|+|++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45666666666665
No 95
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=65.74 E-value=23 Score=25.24 Aligned_cols=13 Identities=23% Similarity=0.488 Sum_probs=5.3
Q ss_pred hHHHHHHHHHHHH
Q 036049 478 GGLVAGLVLGFNF 490 (517)
Q Consensus 478 ~~~~~~~~~~~~~ 490 (517)
++++++++++.++
T Consensus 26 ~~f~~G~llg~l~ 38 (68)
T PF06305_consen 26 IAFLLGALLGWLL 38 (68)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 96
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=63.38 E-value=3.5 Score=42.17 Aligned_cols=63 Identities=29% Similarity=0.242 Sum_probs=31.2
Q ss_pred CCCCCeEeCcCcccccc--CChhccCCCCCCeeeCCCC--cccccCcccccc--CCCCCEEeccCCccccc
Q 036049 349 LKGLQVLNLHNNNLQGH--IPSCLGNLTNLESLDLSNN--KFSGRIPQQLVE--LTFLAFFNVSDNYLTGL 413 (517)
Q Consensus 349 l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~Ls~N--~l~~~~p~~l~~--l~~L~~L~l~~N~l~~~ 413 (517)
.+.+..++|++|++... +...-...|+|+.|+|++| .+.. ..++.+ ...|++|-+.||++...
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccc
Confidence 45566666777766421 1111123466777777777 3321 112222 12366666667666543
No 97
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=62.83 E-value=4.8 Score=41.25 Aligned_cols=61 Identities=15% Similarity=0.122 Sum_probs=29.4
Q ss_pred CCcEEEccCCCCccc--CCccCCCCCCCcEEEccCCcccccccccccCC--ccccEEEccccccc
Q 036049 114 SLKLLDLRSCGFWGK--VPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNL--RSLEAIYMSKCNFS 174 (517)
Q Consensus 114 ~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l--~~L~~L~L~~n~l~ 174 (517)
.+..++|++|++... +..--...++|+.|+|++|...-....++.++ ..|++|.+.+|.+.
T Consensus 219 ~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred ceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 555666666665321 11111234566666776662211111222222 34677777777765
No 98
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=61.10 E-value=56 Score=29.11 Aligned_cols=7 Identities=29% Similarity=0.136 Sum_probs=3.0
Q ss_pred chhhhhh
Q 036049 469 WKIILIG 475 (517)
Q Consensus 469 ~~~~~~~ 475 (517)
...++|.
T Consensus 127 K~amLIC 133 (227)
T PF05399_consen 127 KMAMLIC 133 (227)
T ss_pred chhHHHH
Confidence 4444444
No 99
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=60.53 E-value=28 Score=22.73 Aligned_cols=15 Identities=7% Similarity=-0.086 Sum_probs=7.3
Q ss_pred hhhhhhhhhHHHHHH
Q 036049 470 KIILIGYAGGLVAGL 484 (517)
Q Consensus 470 ~~~~~~~~~~~~~~~ 484 (517)
.++..+.++++++.+
T Consensus 5 ~yVW~sYg~t~~~l~ 19 (46)
T PF04995_consen 5 FYVWSSYGVTALVLA 19 (46)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555544333
No 100
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=60.21 E-value=12 Score=30.35 Aligned_cols=16 Identities=31% Similarity=0.353 Sum_probs=7.5
Q ss_pred hhhhhHHHHHHHHHHH
Q 036049 474 IGYAGGLVAGLVLGFN 489 (517)
Q Consensus 474 ~~~~~~~~~~~~~~~~ 489 (517)
+++++|++++++.+++
T Consensus 67 ~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHH
Confidence 4444555555544333
No 101
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=58.11 E-value=12 Score=30.45 Aligned_cols=18 Identities=17% Similarity=0.065 Sum_probs=7.8
Q ss_pred hhhHHHHHHHHHHHHhhh
Q 036049 476 YAGGLVAGLVLGFNFSTG 493 (517)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~ 493 (517)
.+++++++++.+++..+.
T Consensus 65 ~i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHHH
Confidence 344444444444444443
No 102
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=53.47 E-value=18 Score=27.49 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=13.3
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHhhhHHHH
Q 036049 468 DWKIILIGYAGGLVAGLVLGFNFSTGIIGW 497 (517)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (517)
.|.+++.+ ++++++++++.+++..+.+|
T Consensus 41 yWpyLA~G--GG~iLilIii~Lv~CC~~K~ 68 (98)
T PF07204_consen 41 YWPYLAAG--GGLILILIIIALVCCCRAKH 68 (98)
T ss_pred hhHHhhcc--chhhhHHHHHHHHHHhhhhh
Confidence 46665554 44444444444444444443
No 103
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=53.02 E-value=52 Score=23.34 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=12.1
Q ss_pred chhhhhhhhhHHHHHHHHHHHHh
Q 036049 469 WKIILIGYAGGLVAGLVLGFNFS 491 (517)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~ 491 (517)
..++.+++++|++++.++.....
T Consensus 21 ~l~il~~f~~G~llg~l~~~~~~ 43 (68)
T PF06305_consen 21 GLLILIAFLLGALLGWLLSLPSR 43 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666655554444443
No 104
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=49.03 E-value=28 Score=33.36 Aligned_cols=23 Identities=9% Similarity=-0.002 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHH
Q 036049 477 AGGLVAGLVLGFNFSTGIIGWIL 499 (517)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~ 499 (517)
++.+++++|+++++++....|++
T Consensus 259 ~aSiiaIliIVLIMvIIYLILRY 281 (299)
T PF02009_consen 259 IASIIAILIIVLIMVIIYLILRY 281 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443334433
No 105
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=47.38 E-value=6.5 Score=32.64 Aligned_cols=19 Identities=21% Similarity=-0.085 Sum_probs=7.9
Q ss_pred hhhhhHHHHHHHHHHHHhh
Q 036049 474 IGYAGGLVAGLVLGFNFST 492 (517)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~ 492 (517)
+++++.++++++++.+-++
T Consensus 12 i~igi~Ll~lLl~cgiGcv 30 (158)
T PF11770_consen 12 ISIGISLLLLLLLCGIGCV 30 (158)
T ss_pred HHHHHHHHHHHHHHhcceE
Confidence 3444444444444444333
No 106
>PF15069 FAM163: FAM163 family
Probab=46.85 E-value=19 Score=29.90 Aligned_cols=33 Identities=12% Similarity=-0.035 Sum_probs=20.0
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 036049 472 ILIGYAGGLVAGLVLGFNFSTGIIGWILEKLGR 504 (517)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (517)
++.|.+++++|.+.|++++.+.+..+|..++..
T Consensus 7 VItGgILAtVILLcIIaVLCYCRLQYYCCKK~~ 39 (143)
T PF15069_consen 7 VITGGILATVILLCIIAVLCYCRLQYYCCKKNE 39 (143)
T ss_pred EEechHHHHHHHHHHHHHHHHHhhHHHHhhccC
Confidence 344555666666666666666667777666543
No 107
>COG3216 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.37 E-value=49 Score=28.60 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=15.9
Q ss_pred chhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHH
Q 036049 469 WKIILIGYAGGLVAGLVLGFNFSTGIIGWILEKL 502 (517)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (517)
|.-++..+.+|.++..+++.+.++...+|-+..+
T Consensus 135 w~P~l~pm~vgav~~~a~~~ll~y~~~r~~v~~f 168 (184)
T COG3216 135 WGPVLKPMLVGAVPAGAIGGLLFYGLTRYSVTRF 168 (184)
T ss_pred cchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555444444444444444444444
No 108
>PRK00523 hypothetical protein; Provisional
Probab=42.35 E-value=67 Score=23.25 Aligned_cols=9 Identities=0% Similarity=-0.027 Sum_probs=4.1
Q ss_pred HHHHHHHHh
Q 036049 495 IGWILEKLG 503 (517)
Q Consensus 495 ~~~~~~~~~ 503 (517)
++++-++++
T Consensus 27 rk~~~k~l~ 35 (72)
T PRK00523 27 KKMFKKQIR 35 (72)
T ss_pred HHHHHHHHH
Confidence 444444444
No 109
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=40.53 E-value=12 Score=31.43 Aligned_cols=8 Identities=38% Similarity=0.688 Sum_probs=3.1
Q ss_pred hhhhhhHH
Q 036049 473 LIGYAGGL 480 (517)
Q Consensus 473 ~~~~~~~~ 480 (517)
+||+++|+
T Consensus 51 VIGvVVGV 58 (154)
T PF04478_consen 51 VIGVVVGV 58 (154)
T ss_pred EEEEEecc
Confidence 34443333
No 110
>PRK09459 pspG phage shock protein G; Reviewed
Probab=40.41 E-value=47 Score=24.16 Aligned_cols=17 Identities=6% Similarity=0.432 Sum_probs=9.3
Q ss_pred HHHHHHHHHhhhHHHHH
Q 036049 494 IIGWILEKLGRQQKATR 510 (517)
Q Consensus 494 ~~~~~~~~~~~~~~~~~ 510 (517)
...|.+|..++++.++|
T Consensus 56 v~vW~~r~~~~~~~~~y 72 (76)
T PRK09459 56 VVVWVIRAIKAPKVPRY 72 (76)
T ss_pred HHHHHHHHhhccccccc
Confidence 45566666655544443
No 111
>PRK01844 hypothetical protein; Provisional
Probab=38.88 E-value=82 Score=22.83 Aligned_cols=10 Identities=10% Similarity=0.348 Sum_probs=4.6
Q ss_pred HHHHHHHHhh
Q 036049 495 IGWILEKLGR 504 (517)
Q Consensus 495 ~~~~~~~~~~ 504 (517)
++++-+++++
T Consensus 26 rk~~~k~lk~ 35 (72)
T PRK01844 26 RKYMMNYLQK 35 (72)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 112
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=38.67 E-value=36 Score=33.13 Aligned_cols=13 Identities=23% Similarity=0.204 Sum_probs=4.7
Q ss_pred hhhhhhhHHHHHH
Q 036049 472 ILIGYAGGLVAGL 484 (517)
Q Consensus 472 ~~~~~~~~~~~~~ 484 (517)
|..++++.+++++
T Consensus 312 IiaSiIAIvvIVL 324 (353)
T TIGR01477 312 IIASIIAILIIVL 324 (353)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 113
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=38.36 E-value=19 Score=44.52 Aligned_cols=32 Identities=34% Similarity=0.501 Sum_probs=28.4
Q ss_pred eCcCccccccCChhccCCCCCCeeeCCCCccc
Q 036049 356 NLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 387 (517)
Q Consensus 356 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 387 (517)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999777778999999999999999876
No 114
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=38.29 E-value=50 Score=27.91 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=7.1
Q ss_pred hhhHHHHHHHHHHHHhh
Q 036049 476 YAGGLVAGLVLGFNFST 492 (517)
Q Consensus 476 ~~~~~~~~~~~~~~~~~ 492 (517)
+++|++.+.+++..++.
T Consensus 11 ~~ag~a~~~flgYciYF 27 (148)
T TIGR00985 11 IAAGIAAAAFLGYAIYF 27 (148)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 33444444444444443
No 115
>PTZ00046 rifin; Provisional
Probab=37.20 E-value=39 Score=33.02 Aligned_cols=9 Identities=11% Similarity=-0.020 Sum_probs=3.2
Q ss_pred hhhhhHHHH
Q 036049 474 IGYAGGLVA 482 (517)
Q Consensus 474 ~~~~~~~~~ 482 (517)
.++++.+++
T Consensus 319 aSiiAIvVI 327 (358)
T PTZ00046 319 ASIVAIVVI 327 (358)
T ss_pred HHHHHHHHH
Confidence 333333333
No 116
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=36.81 E-value=16 Score=36.70 Aligned_cols=24 Identities=29% Similarity=0.156 Sum_probs=12.7
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHh
Q 036049 468 DWKIILIGYAGGLVAGLVLGFNFS 491 (517)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~ 491 (517)
...+..|+|++++||+-+|.++.|
T Consensus 366 tgaIaGIsvavvvvVgglvGfLcW 389 (397)
T PF03302_consen 366 TGAIAGISVAVVVVVGGLVGFLCW 389 (397)
T ss_pred ccceeeeeehhHHHHHHHHHHHhh
Confidence 344555555555555555555554
No 117
>PTZ00370 STEVOR; Provisional
Probab=36.79 E-value=44 Score=31.39 Aligned_cols=7 Identities=14% Similarity=0.638 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 036049 496 GWILEKL 502 (517)
Q Consensus 496 ~~~~~~~ 502 (517)
.|.+|++
T Consensus 276 iwlyrrR 282 (296)
T PTZ00370 276 IWLYRRR 282 (296)
T ss_pred HHHHHhh
Confidence 3544433
No 118
>PF15179 Myc_target_1: Myc target protein 1
Probab=35.21 E-value=20 Score=31.00 Aligned_cols=18 Identities=22% Similarity=0.556 Sum_probs=7.2
Q ss_pred hhhhhhHHHHHHHHHHHH
Q 036049 473 LIGYAGGLVAGLVLGFNF 490 (517)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~ 490 (517)
++++.+.++|++|++.++
T Consensus 22 IlaF~vSm~iGLviG~li 39 (197)
T PF15179_consen 22 ILAFCVSMAIGLVIGALI 39 (197)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444443333
No 119
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=34.38 E-value=23 Score=24.63 Aligned_cols=24 Identities=29% Similarity=0.211 Sum_probs=10.6
Q ss_pred chhhhhhhhhHHHHHHHHHHHHhh
Q 036049 469 WKIILIGYAGGLVAGLVLGFNFST 492 (517)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~ 492 (517)
..++++.++..++++++.-++++.
T Consensus 13 GlIVLlvV~g~ll~flvGnyvlY~ 36 (69)
T PF04689_consen 13 GLIVLLVVAGLLLVFLVGNYVLYV 36 (69)
T ss_pred CeEEeehHHHHHHHHHHHHHHHHH
Confidence 344445444444444444444443
No 120
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=33.33 E-value=1.4e+02 Score=19.39 Aligned_cols=14 Identities=7% Similarity=0.038 Sum_probs=6.8
Q ss_pred chhhhhhhhhHHHH
Q 036049 469 WKIILIGYAGGLVA 482 (517)
Q Consensus 469 ~~~~~~~~~~~~~~ 482 (517)
..+|..+.++++++
T Consensus 5 ~~yVW~sYg~t~l~ 18 (45)
T TIGR03141 5 AFYVWLAYGITALV 18 (45)
T ss_pred cHHHHHHHHHHHHH
Confidence 34555555554443
No 121
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=30.99 E-value=33 Score=18.97 Aligned_cols=11 Identities=27% Similarity=0.365 Sum_probs=5.6
Q ss_pred CCCCeEeCcCc
Q 036049 350 KGLQVLNLHNN 360 (517)
Q Consensus 350 ~~L~~L~Ls~N 360 (517)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555555
No 122
>PRK11677 hypothetical protein; Provisional
Probab=30.00 E-value=1e+02 Score=25.62 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHhh
Q 036049 478 GGLVAGLVLGFNFST 492 (517)
Q Consensus 478 ~~~~~~~~~~~~~~~ 492 (517)
++++|++++++++.+
T Consensus 8 i~livG~iiG~~~~R 22 (134)
T PRK11677 8 IGLVVGIIIGAVAMR 22 (134)
T ss_pred HHHHHHHHHHHHHHh
Confidence 444555555555544
No 123
>PF15122 TMEM206: TMEM206 protein family
Probab=28.25 E-value=1.3e+02 Score=27.41 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=20.0
Q ss_pred hhhhhHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHH
Q 036049 474 IGYAGGLVAGLVLGFNFSTGIIGWILEKLGRQQKATR 510 (517)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (517)
+++.+|+.++++-..=+..--..|+++.++|+.+++-
T Consensus 255 ia~lCGvFlaLfKAa~FaklsikWmikiRkr~lk~~~ 291 (298)
T PF15122_consen 255 IAILCGVFLALFKAAEFAKLSIKWMIKIRKRHLKRRM 291 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444444444444444444456688877766555433
No 124
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=27.84 E-value=1.1e+02 Score=21.94 Aligned_cols=10 Identities=0% Similarity=-0.120 Sum_probs=5.3
Q ss_pred HHHHHHHHhh
Q 036049 495 IGWILEKLGR 504 (517)
Q Consensus 495 ~~~~~~~~~~ 504 (517)
..||++.++.
T Consensus 51 tN~YFK~k~d 60 (68)
T PF04971_consen 51 TNLYFKIKED 60 (68)
T ss_pred hHhhhhhhHh
Confidence 4566655443
No 125
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=27.75 E-value=98 Score=22.15 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=14.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhhhHH
Q 036049 470 KIILIGYAGGLVAGLVLGFNFSTGII 495 (517)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (517)
.+.+|+++.+++++++-.+.-++|++
T Consensus 32 qW~aIGvi~gi~~~~lt~ltN~YFK~ 57 (68)
T PF04971_consen 32 QWAAIGVIGGIFFGLLTYLTNLYFKI 57 (68)
T ss_pred cchhHHHHHHHHHHHHHHHhHhhhhh
Confidence 35556666666666654444444433
No 126
>PRK11677 hypothetical protein; Provisional
Probab=27.35 E-value=46 Score=27.63 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=20.3
Q ss_pred chhhhhhhhhHHHHHHHHHHHHhh
Q 036049 469 WKIILIGYAGGLVAGLVLGFNFST 492 (517)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~ 492 (517)
|.++++++++|++++++++-+.-.
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~ 26 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNR 26 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 778889999999999988887654
No 127
>PF15179 Myc_target_1: Myc target protein 1
Probab=27.33 E-value=60 Score=28.18 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=13.9
Q ss_pred chhhhhhhhhHHHHHHHHHHHHh
Q 036049 469 WKIILIGYAGGLVAGLVLGFNFS 491 (517)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~ 491 (517)
...+-+++++|++++.+|-+++.
T Consensus 22 IlaF~vSm~iGLviG~li~~Llt 44 (197)
T PF15179_consen 22 ILAFCVSMAIGLVIGALIWALLT 44 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666777666665555544
No 128
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=27.17 E-value=7.9 Score=30.05 Aligned_cols=18 Identities=28% Similarity=0.117 Sum_probs=6.8
Q ss_pred hhhhHHHHHHHHHHHHhh
Q 036049 475 GYAGGLVAGLVLGFNFST 492 (517)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~ 492 (517)
++++.+++++++.+++++
T Consensus 72 ~vg~~~~v~~lv~~l~w~ 89 (96)
T PTZ00382 72 SVAVVAVVGGLVGFLCWW 89 (96)
T ss_pred EeehhhHHHHHHHHHhhe
Confidence 333333333333344333
No 129
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=26.05 E-value=89 Score=22.97 Aligned_cols=17 Identities=0% Similarity=-0.338 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHhhhHHH
Q 036049 480 LVAGLVLGFNFSTGIIG 496 (517)
Q Consensus 480 ~~~~~~~~~~~~~~~~~ 496 (517)
++++++...+++.|+.+
T Consensus 13 f~ifVap~WL~lHY~sk 29 (75)
T PF06667_consen 13 FMIFVAPIWLILHYRSK 29 (75)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33333334444444333
No 130
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.09 E-value=55 Score=26.62 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=10.1
Q ss_pred hhhHHHHHHHHHHHHhhh
Q 036049 476 YAGGLVAGLVLGFNFSTG 493 (517)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~ 493 (517)
.++|+|++++|+.++++.
T Consensus 11 a~igLvvGi~IG~li~Rl 28 (138)
T COG3105 11 ALIGLVVGIIIGALIARL 28 (138)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555666666666553
No 131
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.44 E-value=1.6e+02 Score=24.03 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=16.6
Q ss_pred cchhhhhhhhhHHHHHHHHHHHH
Q 036049 468 DWKIILIGYAGGLVAGLVLGFNF 490 (517)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~ 490 (517)
.|.+.++++++|++|+.+++=+.
T Consensus 7 ~W~~a~igLvvGi~IG~li~Rlt 29 (138)
T COG3105 7 TWEYALIGLVVGIIIGALIARLT 29 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 47777788788877777666554
No 132
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=22.42 E-value=79 Score=21.84 Aligned_cols=14 Identities=64% Similarity=1.051 Sum_probs=6.7
Q ss_pred HHHHhhhHHHHHhh
Q 036049 499 LEKLGRQQKATRRR 512 (517)
Q Consensus 499 ~~~~~~~~~~~~~~ 512 (517)
.++.++++.++|+|
T Consensus 15 L~RvGr~q~~~r~R 28 (60)
T PF06072_consen 15 LRRVGRQQHASRRR 28 (60)
T ss_pred HHHHhHHHHHHHHH
Confidence 35555665333333
No 133
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=21.88 E-value=55 Score=35.51 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=11.7
Q ss_pred cchhhhhhhhhHHHHHHHHHHHH
Q 036049 468 DWKIILIGYAGGLVAGLVLGFNF 490 (517)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~ 490 (517)
.+.+++++|.+++++++++++.+
T Consensus 270 YHT~fLl~ILG~~~livl~lL~v 292 (807)
T PF10577_consen 270 YHTVFLLAILGGTALIVLILLCV 292 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666655555444433333
No 134
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=21.83 E-value=46 Score=21.82 Aligned_cols=9 Identities=33% Similarity=0.523 Sum_probs=7.6
Q ss_pred CCCCCCCCC
Q 036049 431 NSGLCGKPL 439 (517)
Q Consensus 431 Np~~c~~~~ 439 (517)
|||.|+|.+
T Consensus 1 NP~~CdC~l 9 (51)
T smart00082 1 NPFICDCEL 9 (51)
T ss_pred CCccCcCCc
Confidence 899999865
No 135
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=21.68 E-value=1.7e+02 Score=23.06 Aligned_cols=24 Identities=13% Similarity=-0.187 Sum_probs=9.0
Q ss_pred chhhhhhhhhHHHHHHHHHHHHhh
Q 036049 469 WKIILIGYAGGLVAGLVLGFNFST 492 (517)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~ 492 (517)
.+++++.++..+..++|.++++++
T Consensus 62 lffvglii~LivSLaLVsFvIFLi 85 (128)
T PF15145_consen 62 LFFVGLIIVLIVSLALVSFVIFLI 85 (128)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHhe
Confidence 334333333333333333344433
No 136
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=21.61 E-value=1.3e+02 Score=22.40 Aligned_cols=13 Identities=8% Similarity=0.251 Sum_probs=7.5
Q ss_pred HHHHHHHHHhhhH
Q 036049 494 IIGWILEKLGRQQ 506 (517)
Q Consensus 494 ~~~~~~~~~~~~~ 506 (517)
.+.|+++...++.
T Consensus 71 DRYwWvkh~DkRc 83 (89)
T PF10762_consen 71 DRYWWVKHFDKRC 83 (89)
T ss_pred hhHHHHHhhhHhh
Confidence 4667776654443
No 137
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=21.21 E-value=86 Score=23.37 Aligned_cols=19 Identities=21% Similarity=0.102 Sum_probs=8.2
Q ss_pred cchhhhhhhhhHHHHHHHH
Q 036049 468 DWKIILIGYAGGLVAGLVL 486 (517)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~ 486 (517)
.|.+|+.+-+++++.+.|.
T Consensus 15 ~~yyiiA~gga~llL~~v~ 33 (87)
T PF11980_consen 15 YWYYIIAMGGALLLLVAVC 33 (87)
T ss_pred eeeHHHhhccHHHHHHHHH
Confidence 3555544434444433333
No 138
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=21.10 E-value=45 Score=25.20 Aligned_cols=17 Identities=41% Similarity=0.601 Sum_probs=7.8
Q ss_pred HHHHHHHhhhHHHHHhh
Q 036049 496 GWILEKLGRQQKATRRR 512 (517)
Q Consensus 496 ~~~~~~~~~~~~~~~~~ 512 (517)
.|+.|-+--..|+||.|
T Consensus 56 ~~fLkDlIlv~KAkrqr 72 (91)
T PF01708_consen 56 TWFLKDLILVLKAKRQR 72 (91)
T ss_pred HHHHHHHhheeeeccCC
Confidence 45555444444444433
No 139
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=21.07 E-value=1.1e+02 Score=25.75 Aligned_cols=13 Identities=15% Similarity=0.163 Sum_probs=5.8
Q ss_pred HHHHHHhhhHHHH
Q 036049 485 VLGFNFSTGIIGW 497 (517)
Q Consensus 485 ~~~~~~~~~~~~~ 497 (517)
+++.++++.|..|
T Consensus 132 i~~giy~~~r~~~ 144 (145)
T PF10661_consen 132 ICGGIYVVLRKVW 144 (145)
T ss_pred HHHHHHHHHHHhh
Confidence 3344444444444
No 140
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=20.75 E-value=2e+02 Score=22.96 Aligned_cols=48 Identities=21% Similarity=0.200 Sum_probs=0.0
Q ss_pred CCccchhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHhh
Q 036049 465 GASDWKIILIGYAGGLVAGLVLGFNFSTGIIGWILEKLGRQQKATRRR 512 (517)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (517)
....+..--...++.+||+-++.+.+..--.....++..|+.-++|++
T Consensus 73 ~~sp~ps~p~d~aLp~VIGGLcaL~LaamGA~~LLrR~cRr~arrR~~ 120 (126)
T PF03229_consen 73 SSSPGPSPPVDFALPLVIGGLCALTLAAMGAGALLRRCCRRAARRRQR 120 (126)
T ss_pred CCCCCCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 141
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.58 E-value=1.6e+02 Score=24.23 Aligned_cols=13 Identities=54% Similarity=1.091 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHh
Q 036049 479 GLVAGLVLGFNFS 491 (517)
Q Consensus 479 ~~~~~~~~~~~~~ 491 (517)
+++|+++|++++.
T Consensus 5 ~lvvG~iiG~~~~ 17 (128)
T PF06295_consen 5 GLVVGLIIGFLIG 17 (128)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 142
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=20.38 E-value=68 Score=33.84 Aligned_cols=17 Identities=18% Similarity=0.083 Sum_probs=7.8
Q ss_pred chhhhhhhhhHHHHHHH
Q 036049 469 WKIILIGYAGGLVAGLV 485 (517)
Q Consensus 469 ~~~~~~~~~~~~~~~~~ 485 (517)
..||++|+++-++++++
T Consensus 268 NlWII~gVlvPv~vV~~ 284 (684)
T PF12877_consen 268 NLWIIAGVLVPVLVVLL 284 (684)
T ss_pred CeEEEehHhHHHHHHHH
Confidence 44555555444443333
No 143
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=20.05 E-value=1.9e+02 Score=28.86 Aligned_cols=10 Identities=0% Similarity=-0.293 Sum_probs=3.7
Q ss_pred HHHhhhHHHH
Q 036049 488 FNFSTGIIGW 497 (517)
Q Consensus 488 ~~~~~~~~~~ 497 (517)
+.+++|-.+|
T Consensus 55 v~llwwlv~~ 64 (531)
T COG3898 55 VLLLWWLVRS 64 (531)
T ss_pred HHHHHHHHHH
Confidence 3333333333
Done!