Query 036049
Match_columns 517
No_of_seqs 698 out of 4505
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 14:59:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036049.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036049hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.8E-49 6.2E-54 432.7 30.2 125 323-448 629-753 (768)
2 1ogq_A PGIP-2, polygalacturona 100.0 4.2E-45 1.4E-49 355.8 23.3 304 3-443 1-312 (313)
3 4eco_A Uncharacterized protein 100.0 3.2E-44 1.1E-48 382.8 26.4 406 6-436 28-602 (636)
4 4ecn_A Leucine-rich repeat pro 100.0 4E-41 1.4E-45 365.3 26.9 397 4-434 265-840 (876)
5 3j0a_A TOLL-like receptor 5; m 100.0 4.6E-40 1.6E-44 362.2 22.4 145 49-199 14-162 (844)
6 3v47_A TOLL-like receptor 5B a 100.0 4.2E-39 1.4E-43 330.7 26.1 377 48-438 7-412 (455)
7 3vq2_A TLR4, TOLL-like recepto 100.0 8.9E-38 3E-42 332.5 24.2 374 60-439 31-563 (606)
8 4g8a_A TOLL-like receptor 4; l 100.0 2.7E-37 9.4E-42 330.4 27.2 373 60-439 51-585 (635)
9 2id5_A Lingo-1, leucine rich r 100.0 8.6E-37 2.9E-41 315.3 20.0 338 51-438 13-360 (477)
10 2z81_A CD282 antigen, TOLL-lik 100.0 4.8E-37 1.6E-41 323.0 16.8 378 48-438 3-514 (549)
11 2z63_A TOLL-like receptor 4, v 100.0 2.1E-35 7.3E-40 311.9 27.5 366 61-439 28-536 (570)
12 3o6n_A APL1; leucine-rich repe 100.0 3.4E-36 1.2E-40 302.6 17.5 310 61-437 45-355 (390)
13 3t6q_A CD180 antigen; protein- 100.0 9.4E-36 3.2E-40 316.9 21.6 303 116-439 257-565 (606)
14 2id5_A Lingo-1, leucine rich r 100.0 8.1E-36 2.8E-40 308.0 19.4 324 64-439 14-338 (477)
15 3oja_B Anopheles plasmodium-re 100.0 9.3E-36 3.2E-40 315.6 18.8 333 35-437 8-361 (597)
16 4eco_A Uncharacterized protein 100.0 1.6E-35 5.3E-40 315.8 20.3 332 60-415 248-604 (636)
17 3t6q_A CD180 antigen; protein- 100.0 3.5E-34 1.2E-38 304.8 27.8 356 60-434 32-462 (606)
18 3rgz_A Protein brassinosteroid 100.0 6E-35 2.1E-39 318.2 20.2 324 61-410 343-739 (768)
19 1ziw_A TOLL-like receptor 3; i 100.0 2.5E-34 8.5E-39 310.1 24.3 358 61-439 222-627 (680)
20 4ecn_A Leucine-rich repeat pro 100.0 1.9E-34 6.5E-39 313.0 22.5 353 60-438 490-870 (876)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.7E-34 1.3E-38 301.6 23.0 337 61-439 52-515 (562)
22 3v47_A TOLL-like receptor 5B a 100.0 3.4E-34 1.2E-38 294.1 21.9 331 60-420 53-417 (455)
23 2z7x_B TOLL-like receptor 1, v 100.0 1.8E-34 6.2E-39 301.3 20.1 112 325-439 373-486 (520)
24 1ziw_A TOLL-like receptor 3; i 100.0 7.4E-33 2.5E-37 298.6 30.1 134 61-198 25-158 (680)
25 3vq2_A TLR4, TOLL-like recepto 100.0 2.1E-33 7.1E-38 298.8 25.0 350 60-416 55-563 (606)
26 4fcg_A Uncharacterized protein 100.0 3.7E-34 1.3E-38 280.2 15.1 282 5-411 24-314 (328)
27 3o6n_A APL1; leucine-rich repe 100.0 3.5E-32 1.2E-36 273.3 23.0 309 61-438 69-378 (390)
28 4fmz_A Internalin; leucine ric 100.0 6.1E-32 2.1E-36 267.2 23.9 303 60-433 43-345 (347)
29 2z63_A TOLL-like receptor 4, v 100.0 1.2E-32 4.2E-37 290.7 19.9 342 61-419 52-539 (570)
30 2z7x_B TOLL-like receptor 1, v 100.0 1.6E-32 5.5E-37 286.5 19.9 111 323-434 321-434 (520)
31 3oja_B Anopheles plasmodium-re 100.0 1.1E-31 3.8E-36 284.3 22.9 309 61-438 75-384 (597)
32 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.4E-31 4.7E-36 282.0 22.3 329 60-445 75-546 (562)
33 2ft3_A Biglycan; proteoglycan, 100.0 7.3E-31 2.5E-35 257.8 23.7 287 63-431 35-330 (332)
34 1xku_A Decorin; proteoglycan, 100.0 9.9E-31 3.4E-35 256.6 24.6 287 63-431 33-329 (330)
35 2z81_A CD282 antigen, TOLL-lik 100.0 2.2E-31 7.6E-36 279.8 21.1 329 60-416 49-515 (549)
36 1o6v_A Internalin A; bacterial 100.0 9.4E-31 3.2E-35 269.1 24.2 322 61-435 68-389 (466)
37 3j0a_A TOLL-like receptor 5; m 100.0 3.1E-31 1.1E-35 291.8 19.6 333 64-413 7-377 (844)
38 4fmz_A Internalin; leucine ric 100.0 3.9E-30 1.3E-34 254.2 24.2 282 60-411 65-346 (347)
39 1xku_A Decorin; proteoglycan, 100.0 5E-30 1.7E-34 251.6 24.3 268 62-409 53-330 (330)
40 2ft3_A Biglycan; proteoglycan, 100.0 3.3E-30 1.1E-34 253.0 21.7 267 88-435 34-308 (332)
41 4g8a_A TOLL-like receptor 4; l 100.0 1.3E-29 4.6E-34 270.8 27.7 349 61-415 76-584 (635)
42 2z80_A TOLL-like receptor 2, v 100.0 1.5E-30 5E-35 257.9 14.9 283 45-416 26-319 (353)
43 3zyj_A Leucine-rich repeat-con 100.0 1.7E-29 5.8E-34 257.8 23.2 229 114-414 65-295 (440)
44 3zyi_A Leucine-rich repeat-con 100.0 1.7E-29 5.7E-34 258.7 22.9 250 89-415 56-307 (452)
45 3bz5_A Internalin-J, INLJ; leu 100.0 3.7E-29 1.3E-33 255.5 24.9 299 61-413 42-354 (457)
46 1o6v_A Internalin A; bacterial 100.0 3.7E-29 1.3E-33 257.2 24.7 304 60-415 89-392 (466)
47 3bz5_A Internalin-J, INLJ; leu 100.0 6.2E-29 2.1E-33 253.9 24.2 294 60-416 63-392 (457)
48 4fcg_A Uncharacterized protein 100.0 1.9E-29 6.5E-34 246.7 18.6 232 85-431 79-311 (328)
49 2z66_A Variable lymphocyte rec 100.0 9.5E-30 3.3E-34 246.9 15.6 254 48-414 6-264 (306)
50 2z80_A TOLL-like receptor 2, v 100.0 6E-30 2E-34 253.5 13.0 279 85-438 29-318 (353)
51 2z66_A Variable lymphocyte rec 100.0 9E-29 3.1E-33 240.0 18.6 113 327-439 151-266 (306)
52 1ogq_A PGIP-2, polygalacturona 100.0 2.9E-29 1E-33 243.9 13.0 158 61-231 76-235 (313)
53 3g06_A SSPH2 (leucine-rich rep 100.0 5.5E-29 1.9E-33 261.8 15.7 286 35-416 11-302 (622)
54 1jl5_A Outer protein YOPM; leu 100.0 4.9E-28 1.7E-32 247.0 22.1 301 61-434 111-429 (454)
55 1ozn_A Reticulon 4 receptor; N 100.0 1.5E-28 5.2E-33 235.8 16.3 133 114-266 33-166 (285)
56 1wwl_A Monocyte differentiatio 100.0 6.4E-31 2.2E-35 255.7 -0.7 254 83-412 39-310 (312)
57 1jl5_A Outer protein YOPM; leu 100.0 1.9E-27 6.5E-32 242.7 24.6 301 61-434 91-409 (454)
58 3zyi_A Leucine-rich repeat-con 100.0 1.2E-27 4.1E-32 245.0 23.1 246 65-388 58-304 (452)
59 3zyj_A Leucine-rich repeat-con 100.0 1.6E-27 5.5E-32 243.1 21.7 245 65-387 47-292 (440)
60 1wwl_A Monocyte differentiatio 99.9 2.4E-29 8.2E-34 244.5 2.0 244 114-434 44-309 (312)
61 1ozn_A Reticulon 4 receptor; N 99.9 3.6E-27 1.2E-31 226.3 16.6 251 64-417 14-267 (285)
62 3o53_A Protein LRIM1, AGAP0063 99.9 1.4E-28 4.8E-33 239.7 5.4 216 114-411 35-250 (317)
63 3oja_A Leucine-rich immune mol 99.9 2.7E-27 9.4E-32 243.8 12.1 254 104-439 22-287 (487)
64 3o53_A Protein LRIM1, AGAP0063 99.9 1.7E-27 5.9E-32 232.0 9.2 242 114-437 11-253 (317)
65 3oja_A Leucine-rich immune mol 99.9 6.1E-27 2.1E-31 241.2 9.7 235 88-406 35-270 (487)
66 1z7x_W Ribonuclease inhibitor; 99.9 7.4E-29 2.5E-33 254.8 -5.7 134 62-198 29-183 (461)
67 3g06_A SSPH2 (leucine-rich rep 99.9 6.1E-25 2.1E-29 231.0 23.3 259 87-435 40-298 (622)
68 1z7x_W Ribonuclease inhibitor; 99.9 8.3E-29 2.8E-33 254.4 -6.6 358 61-433 3-410 (461)
69 2z62_A TOLL-like receptor 4, v 99.9 4.4E-25 1.5E-29 210.6 19.3 228 91-417 11-243 (276)
70 1p9a_G Platelet glycoprotein I 99.9 6.9E-25 2.4E-29 210.4 18.9 69 344-413 142-210 (290)
71 2z62_A TOLL-like receptor 4, v 99.9 6E-25 2.1E-29 209.7 18.1 135 88-232 29-164 (276)
72 2o6q_A Variable lymphocyte rec 99.9 7.4E-25 2.5E-29 208.3 18.3 213 46-289 2-216 (270)
73 2o6q_A Variable lymphocyte rec 99.9 1.2E-23 4.2E-28 199.8 21.6 70 346-415 153-222 (270)
74 1p9a_G Platelet glycoprotein I 99.9 1.9E-23 6.4E-28 200.4 20.4 203 82-387 5-208 (290)
75 3rfs_A Internalin B, repeat mo 99.9 1.2E-23 4E-28 200.2 15.2 220 89-417 21-241 (272)
76 3rfs_A Internalin B, repeat mo 99.9 2.7E-23 9.3E-28 197.6 17.7 157 83-266 37-194 (272)
77 2ast_B S-phase kinase-associat 99.9 1.5E-25 5.3E-30 220.1 0.9 265 47-417 35-312 (336)
78 4glp_A Monocyte differentiatio 99.9 7.1E-24 2.4E-28 205.8 12.5 235 86-412 63-308 (310)
79 3m19_A Variable lymphocyte rec 99.9 6.6E-23 2.3E-27 192.6 16.5 191 47-268 3-194 (251)
80 2xwt_C Thyrotropin receptor; s 99.9 3.4E-23 1.1E-27 193.1 14.1 134 114-270 32-172 (239)
81 3goz_A Leucine-rich repeat-con 99.9 8.4E-25 2.9E-29 217.1 1.7 64 350-413 225-299 (362)
82 4glp_A Monocyte differentiatio 99.9 2.4E-23 8.2E-28 202.0 10.2 191 62-270 65-267 (310)
83 1h6u_A Internalin H; cell adhe 99.9 3.4E-22 1.2E-26 193.5 18.0 39 347-387 192-230 (308)
84 2ca6_A RAN GTPase-activating p 99.9 5E-24 1.7E-28 213.5 5.1 88 328-415 218-320 (386)
85 3goz_A Leucine-rich repeat-con 99.9 2.1E-24 7E-29 214.3 1.6 270 66-394 3-304 (362)
86 2xwt_C Thyrotropin receptor; s 99.9 1.3E-22 4.4E-27 189.1 13.7 196 60-287 30-235 (239)
87 1h6u_A Internalin H; cell adhe 99.9 4.9E-22 1.7E-26 192.4 17.7 62 347-412 170-231 (308)
88 3m19_A Variable lymphocyte rec 99.9 7.7E-22 2.6E-26 185.3 17.3 212 114-446 15-232 (251)
89 4ay9_X Follicle-stimulating ho 99.9 5.8E-22 2E-26 195.6 12.0 106 87-194 30-137 (350)
90 4ay9_X Follicle-stimulating ho 99.9 5.1E-21 1.7E-25 188.8 15.7 240 91-409 13-257 (350)
91 2ca6_A RAN GTPase-activating p 99.9 6.7E-23 2.3E-27 205.3 2.2 240 82-391 27-320 (386)
92 2ast_B S-phase kinase-associat 99.9 1E-21 3.6E-26 192.7 9.9 246 88-433 48-305 (336)
93 3cvr_A Invasion plasmid antige 99.8 2.2E-21 7.6E-26 201.5 12.5 115 36-174 33-153 (571)
94 2o6s_A Variable lymphocyte rec 99.8 4.9E-21 1.7E-25 174.4 12.4 178 47-272 5-184 (208)
95 2o6s_A Variable lymphocyte rec 99.8 2.8E-20 9.6E-25 169.3 15.6 152 90-267 10-162 (208)
96 3cvr_A Invasion plasmid antige 99.8 2.8E-20 9.5E-25 193.3 16.6 195 88-398 60-254 (571)
97 3ogk_B Coronatine-insensitive 99.8 1.9E-22 6.4E-27 213.7 0.0 317 61-413 164-528 (592)
98 3ogk_B Coronatine-insensitive 99.8 7E-23 2.4E-27 217.0 -6.2 344 62-433 139-525 (592)
99 3e6j_A Variable lymphocyte rec 99.8 1.2E-19 4.1E-24 167.7 14.2 159 45-232 15-174 (229)
100 4b8c_D Glucose-repressible alc 99.8 9.1E-21 3.1E-25 204.0 6.8 205 6-271 130-334 (727)
101 2p1m_B Transport inhibitor res 99.8 1.2E-22 4.1E-27 215.2 -10.1 352 61-433 105-518 (594)
102 1h6t_A Internalin B; cell adhe 99.8 4.1E-19 1.4E-23 170.3 15.0 123 114-266 47-169 (291)
103 3e6j_A Variable lymphocyte rec 99.8 9.1E-19 3.1E-23 161.7 15.4 156 89-270 21-176 (229)
104 1h6t_A Internalin B; cell adhe 99.8 6.7E-19 2.3E-23 168.8 14.7 172 61-271 46-217 (291)
105 2v70_A SLIT-2, SLIT homolog 2 99.8 3.3E-19 1.1E-23 163.6 12.0 157 188-415 14-170 (220)
106 2v70_A SLIT-2, SLIT homolog 2 99.8 6.6E-19 2.2E-23 161.6 13.8 127 65-198 15-142 (220)
107 2xot_A Amphoterin-induced prot 99.8 1.9E-19 6.6E-24 178.2 9.9 93 345-437 107-205 (361)
108 1dce_A Protein (RAB geranylger 99.8 2.5E-21 8.5E-26 202.2 -4.1 192 134-417 346-552 (567)
109 2v9t_B SLIT homolog 2 protein 99.8 1.4E-18 4.8E-23 159.4 14.4 134 114-267 33-166 (220)
110 4ezg_A Putative uncharacterize 99.8 6.6E-19 2.3E-23 158.7 11.9 155 82-266 39-194 (197)
111 1m9s_A Internalin B; cell inva 99.8 2.4E-18 8.2E-23 180.7 16.8 146 62-231 44-189 (605)
112 2v9t_B SLIT homolog 2 protein 99.8 1.4E-18 4.9E-23 159.3 13.0 133 87-231 32-166 (220)
113 1m9s_A Internalin B; cell inva 99.8 4.7E-18 1.6E-22 178.5 16.9 188 63-291 23-210 (605)
114 2xot_A Amphoterin-induced prot 99.8 3E-18 1E-22 169.7 14.4 176 65-267 22-203 (361)
115 2p1m_B Transport inhibitor res 99.8 1.7E-20 5.8E-25 198.8 -2.5 309 61-411 130-519 (594)
116 1dce_A Protein (RAB geranylger 99.8 4.6E-21 1.6E-25 200.2 -7.4 217 84-405 346-567 (567)
117 4ezg_A Putative uncharacterize 99.8 5.3E-18 1.8E-22 152.8 12.5 151 61-231 44-195 (197)
118 1xeu_A Internalin C; cellular 99.7 1.8E-18 6.1E-23 163.2 9.1 64 346-413 124-187 (263)
119 1xeu_A Internalin C; cellular 99.7 3.9E-18 1.3E-22 160.9 9.3 170 62-271 20-189 (263)
120 1w8a_A SLIT protein; signaling 99.7 1.9E-17 6.4E-22 148.5 8.5 113 326-438 54-166 (192)
121 1w8a_A SLIT protein; signaling 99.7 1.8E-16 6.1E-21 142.0 12.7 128 65-200 12-141 (192)
122 2wfh_A SLIT homolog 2 protein 99.7 1.1E-16 3.8E-21 143.4 9.7 114 325-439 30-144 (193)
123 2ell_A Acidic leucine-rich nuc 99.7 1.3E-16 4.5E-21 139.7 9.9 133 114-266 25-160 (168)
124 4b8c_D Glucose-repressible alc 99.7 1.6E-17 5.6E-22 178.7 4.5 153 87-287 173-325 (727)
125 2ell_A Acidic leucine-rich nuc 99.7 2.2E-16 7.5E-21 138.3 10.1 134 87-232 24-162 (168)
126 2je0_A Acidic leucine-rich nuc 99.6 2.9E-16 9.9E-21 134.5 8.7 111 114-233 18-129 (149)
127 2je0_A Acidic leucine-rich nuc 99.6 2.1E-16 7.2E-21 135.4 7.5 127 61-193 17-148 (149)
128 2wfh_A SLIT homolog 2 protein 99.6 1.9E-15 6.6E-20 135.3 13.2 126 65-198 14-139 (193)
129 2o6r_A Variable lymphocyte rec 99.6 2.8E-15 9.7E-20 132.3 12.6 132 48-199 6-138 (177)
130 1a9n_A U2A', U2A'; complex (nu 99.6 8.7E-16 3E-20 135.5 9.1 135 82-231 14-154 (176)
131 3sb4_A Hypothetical leucine ri 99.6 1.6E-15 5.6E-20 148.0 11.2 271 62-405 26-328 (329)
132 2o6r_A Variable lymphocyte rec 99.6 5.3E-15 1.8E-19 130.6 12.9 112 138-270 29-141 (177)
133 4fdw_A Leucine rich hypothetic 99.6 7.4E-14 2.5E-18 139.4 20.4 169 85-286 111-279 (401)
134 1a9n_A U2A', U2A'; complex (nu 99.5 1.5E-14 5.1E-19 127.6 8.5 131 114-266 20-153 (176)
135 3g39_A Variable lymphocyte rec 99.5 4.9E-14 1.7E-18 123.4 9.9 85 114-198 31-115 (170)
136 3g39_A Variable lymphocyte rec 99.5 5.3E-14 1.8E-18 123.1 8.9 108 328-438 11-119 (170)
137 1ds9_A Outer arm dynein; leuci 99.5 3.9E-16 1.3E-20 140.6 -5.0 114 104-232 40-155 (198)
138 1ds9_A Outer arm dynein; leuci 99.5 3.1E-16 1.1E-20 141.2 -5.7 64 346-411 111-185 (198)
139 3sb4_A Hypothetical leucine ri 99.5 8.3E-14 2.8E-18 135.8 10.6 198 60-284 48-327 (329)
140 2r9u_A Variable lymphocyte rec 99.5 1E-13 3.5E-18 121.8 9.8 103 65-174 16-118 (174)
141 2r9u_A Variable lymphocyte rec 99.5 1.1E-13 3.7E-18 121.6 8.9 107 329-438 15-122 (174)
142 4fdw_A Leucine rich hypothetic 99.5 1.6E-12 5.4E-17 129.7 18.3 241 113-412 113-359 (401)
143 2ifg_A High affinity nerve gro 99.4 9.8E-13 3.4E-17 129.2 9.1 107 330-438 12-120 (347)
144 3un9_A NLR family member X1; l 99.3 6.2E-14 2.1E-18 138.6 -1.3 164 61-231 72-253 (372)
145 4fs7_A Uncharacterized protein 99.3 9.4E-11 3.2E-15 117.1 20.0 297 61-408 71-376 (394)
146 2ifg_A High affinity nerve gro 99.3 9E-12 3.1E-16 122.3 9.2 88 83-174 27-116 (347)
147 3un9_A NLR family member X1; l 99.3 1.5E-13 5E-18 135.9 -3.7 169 86-267 71-253 (372)
148 4fs7_A Uncharacterized protein 99.0 5.5E-09 1.9E-13 104.2 16.8 285 82-411 66-355 (394)
149 4gt6_A Cell surface protein; l 98.9 2.7E-08 9.2E-13 99.2 17.5 68 341-410 302-369 (394)
150 2ra8_A Uncharacterized protein 98.9 1E-09 3.4E-14 107.5 4.8 59 349-409 278-341 (362)
151 4gt6_A Cell surface protein; l 98.9 1.1E-07 3.8E-12 94.7 19.1 281 82-408 58-344 (394)
152 2ra8_A Uncharacterized protein 98.8 3.9E-09 1.3E-13 103.3 7.3 66 348-413 250-322 (362)
153 3rw6_A Nuclear RNA export fact 98.8 6.3E-10 2.2E-14 103.4 -0.7 62 135-198 168-233 (267)
154 4h09_A Hypothetical leucine ri 98.6 1.8E-06 6.3E-11 85.3 20.2 291 61-408 46-343 (379)
155 1io0_A Tropomodulin; LRR prote 98.6 1.5E-08 5E-13 89.5 1.7 18 83-100 32-50 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 2.1E-08 7.1E-13 88.5 1.5 85 114-198 37-136 (185)
157 4h09_A Hypothetical leucine ri 98.5 7.6E-06 2.6E-10 80.8 19.7 275 61-398 69-356 (379)
158 3rw6_A Nuclear RNA export fact 98.3 2.2E-07 7.4E-12 86.3 3.6 89 326-416 141-238 (267)
159 3e4g_A ATP synthase subunit S, 98.1 6.1E-07 2.1E-11 77.2 2.2 82 114-195 62-149 (176)
160 3e4g_A ATP synthase subunit S, 98.0 1.1E-06 3.7E-11 75.7 0.8 84 326-409 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.4 3.7E-05 1.2E-09 67.4 1.8 15 85-99 39-54 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 5.7E-05 1.9E-09 66.2 1.7 16 84-99 67-82 (197)
163 3rfe_A Platelet glycoprotein I 97.1 0.00087 3E-08 54.7 6.0 56 354-411 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.9 0.0017 5.8E-08 53.0 6.4 55 117-173 12-67 (130)
165 2ks1_B Epidermal growth factor 85.5 0.49 1.7E-05 29.7 2.2 14 471-484 12-25 (44)
166 2knc_B Integrin beta-3; transm 83.1 2.3 7.9E-05 30.6 5.2 8 472-479 13-20 (79)
167 2l2t_A Receptor tyrosine-prote 77.8 0.98 3.4E-05 28.2 1.5 11 471-481 11-21 (44)
168 2knc_B Integrin beta-3; transm 72.2 14 0.00049 26.4 6.7 32 474-505 11-42 (79)
169 2l2t_A Receptor tyrosine-prote 69.9 5 0.00017 25.0 3.3 16 476-491 12-27 (44)
170 2lx0_A Membrane fusion protein 50.8 20 0.00068 19.4 3.0 10 495-504 22-31 (32)
171 2klu_A T-cell surface glycopro 43.6 5.8 0.0002 26.8 0.4 17 474-490 12-28 (70)
172 2lz0_A Uncharacterized protein 41.0 54 0.0018 24.5 5.6 43 127-170 10-52 (100)
173 2lz0_A Uncharacterized protein 36.3 77 0.0026 23.6 5.8 40 343-383 13-52 (100)
174 2l8s_A Integrin alpha-1; trans 35.5 30 0.001 22.6 2.7 12 472-483 12-23 (54)
175 2k9y_A Ephrin type-A receptor 31.5 21 0.00071 21.6 1.5 12 471-482 14-25 (41)
176 2knc_A Integrin alpha-IIB; tra 30.8 42 0.0014 21.9 2.9 11 472-482 15-25 (54)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.8e-49 Score=432.70 Aligned_cols=125 Identities=40% Similarity=0.661 Sum_probs=118.1
Q ss_pred CchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCE
Q 036049 323 KIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAF 402 (517)
Q Consensus 323 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 402 (517)
.....|+.|++++|+++|.+|..++.+++|+.|+|++|+++|.+|..|+.+++|++|||++|++++.+|..+..+++|++
T Consensus 629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 708 (768)
T 3rgz_A 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708 (768)
T ss_dssp SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence 33567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCcccccCCCCCcCCccCCCcccCCCCCCCCCCCCCCCCCCC
Q 036049 403 FNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKPLSKGCESGEA 448 (517)
Q Consensus 403 L~l~~N~l~~~~p~~~~~~~l~~~~~~~Np~~c~~~~~~~c~~~~~ 448 (517)
|++++|+++|.+|+..+|.++...++.|||.+||.|+. .|.....
T Consensus 709 L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~ 753 (768)
T 3rgz_A 709 IDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNA 753 (768)
T ss_dssp EECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC-
T ss_pred EECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCcc
Confidence 99999999999999999999999999999999999987 8976543
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.2e-45 Score=355.82 Aligned_cols=304 Identities=34% Similarity=0.550 Sum_probs=229.0
Q ss_pred CCCchHhHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCCCCCCCCcc--cceeecCCCC--CcEEEEEcCCCCcee--e
Q 036049 3 PLCHDDERSALLQFKESRISGDFYAWKFDCRPTMASWKPEEGNVDCCS--WDGVHCNKNT--GHVVKLNLSHSCLFG--S 76 (517)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~C~--w~gv~c~~~~--~~l~~L~Ls~n~l~~--~ 76 (517)
..|.++|++||++||+++.++. .+++|.. +.+||. |.||.|.... ++|++|+|++|.+++ .
T Consensus 1 ~~c~~~~~~aL~~~k~~~~~~~----------~l~~W~~---~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~ 67 (313)
T 1ogq_A 1 ELCNPQDKQALLQIKKDLGNPT----------TLSSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP 67 (313)
T ss_dssp CCSCHHHHHHHHHHHHHTTCCG----------GGTTCCT---TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEE
T ss_pred CCCCHHHHHHHHHHHHhcCCcc----------cccCCCC---CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcc
Confidence 3699999999999999986543 6789976 678998 9999998654 789999999999987 6
Q ss_pred eCCCcccccCCCCCEEEcCC-CCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccc
Q 036049 77 INSSSSLYKLVHLEWLNLAL-NDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLG 155 (517)
Q Consensus 77 ~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~ 155 (517)
++. .+.++++|++|++++ |.+.+. +|..+..+. +|++|++++|.+.+.+|..|.++++|++|++++|.+++.+|.
T Consensus 68 ~~~--~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 143 (313)
T 1ogq_A 68 IPS--SLANLPYLNFLYIGGINNLVGP-IPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP 143 (313)
T ss_dssp CCG--GGGGCTTCSEEEEEEETTEESC-CCGGGGGCT-TCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred cCh--hHhCCCCCCeeeCCCCCccccc-CChhHhcCC-CCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh
Confidence 666 788888888888874 777654 666666666 777777777777666777777777777777777777766666
Q ss_pred cccCCccccEEEcccccccccCchhhhcCC-cccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCC
Q 036049 156 SIGNLRSLEAIYMSKCNFSGQITSSLRNLT-ELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQ 234 (517)
Q Consensus 156 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 234 (517)
.|..+++|++|++++|.+++.+|..+..++ +|++|++++|.+++ .+|..+
T Consensus 144 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~------~~~~~~----------------------- 194 (313)
T 1ogq_A 144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG------KIPPTF----------------------- 194 (313)
T ss_dssp GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE------ECCGGG-----------------------
T ss_pred HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec------cCChHH-----------------------
Confidence 677777777777777776666666655554 45555555444431 222222
Q ss_pred CCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeee
Q 036049 235 HLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNI 314 (517)
Q Consensus 235 ~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 314 (517)
..++ |++|++++|.+++
T Consensus 195 ---------------~~l~-L~~L~Ls~N~l~~----------------------------------------------- 211 (313)
T 1ogq_A 195 ---------------ANLN-LAFVDLSRNMLEG----------------------------------------------- 211 (313)
T ss_dssp ---------------GGCC-CSEEECCSSEEEE-----------------------------------------------
T ss_pred ---------------hCCc-ccEEECcCCcccC-----------------------------------------------
Confidence 2232 5555555555542
Q ss_pred cCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCcccc
Q 036049 315 KGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQL 394 (517)
Q Consensus 315 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 394 (517)
..|..+..+++|+.|+|++|++++.+|. +..+++|++|+|++|++++.+|..+
T Consensus 212 --------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l 264 (313)
T 1ogq_A 212 --------------------------DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp --------------------------CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGG
T ss_pred --------------------------cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHH
Confidence 2334566778899999999999866665 7888999999999999998999999
Q ss_pred ccCCCCCEEeccCCcccccCCCCCcCCccCCCcccCCCCCCCCCCCCCC
Q 036049 395 VELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKPLSKGC 443 (517)
Q Consensus 395 ~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~Np~~c~~~~~~~c 443 (517)
..+++|++|++++|+++|.+|....++.+..+++.+||++|+.|+. .|
T Consensus 265 ~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 265 TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred hcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 9999999999999999999999888999999999999999998765 36
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.2e-44 Score=382.78 Aligned_cols=406 Identities=18% Similarity=0.191 Sum_probs=298.0
Q ss_pred chHhHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCCCCCCCCccc---ceeecCCCCCcEEEEEcCCCCceeeeCCCcc
Q 036049 6 HDDERSALLQFKESRISGDFYAWKFDCRPTMASWKPEEGNVDCCSW---DGVHCNKNTGHVVKLNLSHSCLFGSINSSSS 82 (517)
Q Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~C~w---~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~ 82 (517)
...|+.||.++++++..+. +.+..+..+...+|+. +.+||.| +||+|+.. ++|+.|+|+++++.|.+|. +
T Consensus 28 ~~~d~~aL~~~~~~~~~~~-w~~~~~~~~~~~~W~~---~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~--~ 100 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKN-WSQQGFGTQPGANWNF---NKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPD--A 100 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGG-CCCCC------CCCCC---SSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECG--G
T ss_pred HHHHHHHHHHHHHHcCCCC-cccCCcCCccCCCCCC---CCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCCh--H
Confidence 3479999999999988755 2222333455679987 6899999 99999765 8999999999999999998 9
Q ss_pred cccCCCCCEEEcCCCCC---------------------------------------------------------------
Q 036049 83 LYKLVHLEWLNLALNDF--------------------------------------------------------------- 99 (517)
Q Consensus 83 l~~l~~L~~L~Ls~n~l--------------------------------------------------------------- 99 (517)
++++++|++|+|++|.+
T Consensus 101 l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 180 (636)
T 4eco_A 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180 (636)
T ss_dssp GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCC
T ss_pred HhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccc
Confidence 99999999999999954
Q ss_pred ---------------CCCCCchhhhhcccCCcEEEccCCCCccc-----------------CCccCC--CCCCCcEEEcc
Q 036049 100 ---------------NSSEIQPEIINLSCSLKLLDLRSCGFWGK-----------------VPHSIG--NFTRLQFLYLG 145 (517)
Q Consensus 100 ---------------~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-----------------~p~~~~--~l~~L~~L~Ls 145 (517)
++ +|..+..+. +|++|+|++|.+++. +|+.++ ++++|++|+++
T Consensus 181 ~~l~~l~l~~~~n~l~~--ip~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~ 257 (636)
T 4eco_A 181 ITLKDTQIGQLSNNITF--VSKAVMRLT-KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257 (636)
T ss_dssp CCCCTTTTTCCSCEEEE--ECGGGGGCT-TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred cchhhhhhccccCCCcc--CCHHHhccc-CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEec
Confidence 12 677777777 999999999999875 999999 99999999999
Q ss_pred CCcccccccccccCCccccEEEccccc-ccc-cCchhhhcC------CcccccccccccCcceecccccccc--cccccc
Q 036049 146 FNNFSGDLLGSIGNLRSLEAIYMSKCN-FSG-QITSSLRNL------TELVVLDMAQNSYGGTMEIEGKVHK--WLLDPN 215 (517)
Q Consensus 146 ~n~i~~~~p~~~~~l~~L~~L~L~~n~-l~~-~~p~~l~~l------~~L~~L~l~~N~l~~~~~~~~~~~~--~~~~~~ 215 (517)
+|.+.+.+|..|+++++|++|++++|. +++ .+|..++.+ ++|++|++++|.++ .+|. .+..
T Consensus 258 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-------~ip~~~~l~~-- 328 (636)
T 4eco_A 258 NCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-------TFPVETSLQK-- 328 (636)
T ss_dssp CCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-------SCCCHHHHTT--
T ss_pred CCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-------ccCchhhhcc--
Confidence 999999999999999999999999998 888 788888876 89999999999887 6676 6666
Q ss_pred CCCCCeEeccCCcccccCCCCCC--------CCCC--CCCCCCCCCCCc-ccEEEccCCcCCCCCChhhhhcc--cccce
Q 036049 216 MQNLNALNLSHNLLTGFDQHLVL--------LPGN--NEEPRTGCGFSK-LRIIDLSDNRFTGKLPSKSFLCW--NAMKI 282 (517)
Q Consensus 216 l~~L~~L~Ls~n~l~~~~~~~~l--------l~~~--~~~~~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~~l--~~L~~ 282 (517)
+++|++|++++|.+++..+...- +.++ ...+..+..+++ |++|++++|.++ .+|.. +... ++|+.
T Consensus 329 l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~-~~~~~l~~L~~ 406 (636)
T 4eco_A 329 MKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNI-FDAKSVSVMSA 406 (636)
T ss_dssp CTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSC-CCTTCSSCEEE
T ss_pred CCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchh-hhhcccCccCE
Confidence 88888888888888744432200 1111 012233456666 777777777776 66642 3332 35666
Q ss_pred eccCcccccccc---cC-------C---------------Cccc-chhhhccceeeeecC-----ccccCCCch------
Q 036049 283 VNASELRYLQDV---LS-------P---------------SGKL-LMTTYDYLLTMNIKG-----RMMAYNKIP------ 325 (517)
Q Consensus 283 L~l~~~~~l~~~---~~-------~---------------~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~------ 325 (517)
|+++++...... +. . ..+. .......+..+.+.+ .+.......
T Consensus 407 L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~ 486 (636)
T 4eco_A 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486 (636)
T ss_dssp EECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTT
T ss_pred EECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccc
Confidence 666553321100 00 0 0000 000011122222211 111111111
Q ss_pred -hhhhhhhCCCCCCcccCccccc--CCCCCCeEeCcCccccccCChhccCCCCCCeeeC------CCCcccccCcccccc
Q 036049 326 -DILAGIILSNKSFDGAIPASIS--NLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDL------SNNKFSGRIPQQLVE 396 (517)
Q Consensus 326 -~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L------s~N~l~~~~p~~l~~ 396 (517)
+.|+.|++++|.++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|++|+| ++|++.+.+|..+..
T Consensus 487 l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~ 564 (636)
T 4eco_A 487 TYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564 (636)
T ss_dssp GGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG
T ss_pred cCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhc
Confidence 28899999999998 6787776 89999999999999996 8888999999999999 567788889999999
Q ss_pred CCCCCEEeccCCcccccCCCCCcCCccCCCcccCCCCCCC
Q 036049 397 LTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCG 436 (517)
Q Consensus 397 l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~Np~~c~ 436 (517)
+++|++|++++|++ +.+|.. ..+.+..+++++||+.|-
T Consensus 565 l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 565 CPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNISI 602 (636)
T ss_dssp CSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCEE
T ss_pred CCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCccc
Confidence 99999999999999 566665 337888999999998873
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4e-41 Score=365.26 Aligned_cols=397 Identities=18% Similarity=0.196 Sum_probs=264.4
Q ss_pred CCchHhHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCCC--CCCCC--ccc------------ceeecCCCCCcEEEEE
Q 036049 4 LCHDDERSALLQFKESRISGDFYAWKFDCRPTMASWKPEE--GNVDC--CSW------------DGVHCNKNTGHVVKLN 67 (517)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~--~~~~~--C~w------------~gv~c~~~~~~l~~L~ 67 (517)
.+..+|+.||++||+++.++ +|+... ...+| |.| .||.|+. .++|+.|+
T Consensus 265 ~~~~~d~~ALl~~k~~l~~~--------------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~ 329 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALDGK--------------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLS 329 (876)
T ss_dssp CHHHHHHHHHHHHHHHTTGG--------------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEE
T ss_pred ccchHHHHHHHHHHHHcCCC--------------CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEE
Confidence 34568999999999998642 443310 01244 899 9999986 47999999
Q ss_pred cCCCCceeeeCCCcccccCCCCCEEEc-CCCCCCCC--------------------------------------------
Q 036049 68 LSHSCLFGSINSSSSLYKLVHLEWLNL-ALNDFNSS-------------------------------------------- 102 (517)
Q Consensus 68 Ls~n~l~~~~~~~~~l~~l~~L~~L~L-s~n~l~~~-------------------------------------------- 102 (517)
|+++++.|.+|+ .++++++|++|+| ++|.+.+.
T Consensus 330 Ls~~~L~G~ip~--~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~ 407 (876)
T 4ecn_A 330 LAGFGAKGRVPD--AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA 407 (876)
T ss_dssp CTTTCCEEEECG--GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHH
T ss_pred CccCCCCCcCch--HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHH
Confidence 999999999998 9999999999999 77743221
Q ss_pred -------------------------------CCchhhhhcccCCcEEEccCCCCcc-----------------cCCccCC
Q 036049 103 -------------------------------EIQPEIINLSCSLKLLDLRSCGFWG-----------------KVPHSIG 134 (517)
Q Consensus 103 -------------------------------~~~~~~~~~~~~L~~L~Ls~n~l~~-----------------~~p~~~~ 134 (517)
.+|..+..+. +|++|+|++|.+++ .+|..++
T Consensus 408 l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~-~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~ 486 (876)
T 4ecn_A 408 INRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLT-KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS 486 (876)
T ss_dssp HHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCT-TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred hhhCccccccccccccchhhceeccccCcccchhHHHhcCC-CCCEEECcCCcCCCCcccccccccccccccccCChhhh
Confidence 0667777777 99999999999987 3899988
Q ss_pred --CCCCCcEEEccCCcccccccccccCCccccEEEccccc-ccc-cCchhhhcCC-------cccccccccccCcceecc
Q 036049 135 --NFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCN-FSG-QITSSLRNLT-------ELVVLDMAQNSYGGTMEI 203 (517)
Q Consensus 135 --~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~-l~~-~~p~~l~~l~-------~L~~L~l~~N~l~~~~~~ 203 (517)
++++|++|+|++|.+.+.+|..|+++++|++|+|++|+ +++ .+|..+..++ +|++|++++|.++
T Consensus 487 f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~----- 561 (876)
T 4ecn_A 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE----- 561 (876)
T ss_dssp GGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-----
T ss_pred hccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-----
Confidence 99999999999999999999999999999999999998 887 7888777766 9999999999987
Q ss_pred cccccc--ccccccCCCCCeEeccCCcccccCCCCCC--------CCCC--CCCCCCCCCCCc-ccEEEccCCcCCCCCC
Q 036049 204 EGKVHK--WLLDPNMQNLNALNLSHNLLTGFDQHLVL--------LPGN--NEEPRTGCGFSK-LRIIDLSDNRFTGKLP 270 (517)
Q Consensus 204 ~~~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l--------l~~~--~~~~~~~~~l~~-L~~L~Ls~N~l~~~~p 270 (517)
.+|. .+.. +++|++|++++|.++.++ ...- +.++ ...+..+..+++ |++|++++|.++ .+|
T Consensus 562 --~ip~~~~l~~--L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp 635 (876)
T 4ecn_A 562 --EFPASASLQK--MVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIP 635 (876)
T ss_dssp --BCCCHHHHTT--CTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCC
T ss_pred --ccCChhhhhc--CCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCc
Confidence 6777 6776 899999999999988554 2200 1110 012223445555 666666666655 455
Q ss_pred hhhhhccc--ccceeccCcccccccc--cC-CC---------------cc---cch---hhhccceeeeecC-----ccc
Q 036049 271 SKSFLCWN--AMKIVNASELRYLQDV--LS-PS---------------GK---LLM---TTYDYLLTMNIKG-----RMM 319 (517)
Q Consensus 271 ~~~~~~l~--~L~~L~l~~~~~l~~~--~~-~~---------------~~---~~~---~~~~~~~~~~~~~-----~~~ 319 (517)
. .+.... +|+.|+++++...... +. .. +. ... .....+..+.+.+ .+.
T Consensus 636 ~-~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~ 714 (876)
T 4ecn_A 636 N-IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE 714 (876)
T ss_dssp S-CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCT
T ss_pred h-hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccCh
Confidence 3 222222 2555555543221100 00 00 00 000 0001111111111 111
Q ss_pred cCCCch-------hhhhhhhCCCCCCcccCccccc--CCCCCCeEeCcCccccccCChhccCCCCCCeeeCCC------C
Q 036049 320 AYNKIP-------DILAGIILSNKSFDGAIPASIS--NLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN------N 384 (517)
Q Consensus 320 ~~~~~~-------~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~------N 384 (517)
...... +.|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++ |
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N 792 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGN 792 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCC
T ss_pred HHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccc
Confidence 111111 26666777777766 5566665 66777777777777764 566666777777777755 5
Q ss_pred cccccCccccccCCCCCEEeccCCcccccCCCCCcCCccCCCcccCCCCC
Q 036049 385 KFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGL 434 (517)
Q Consensus 385 ~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~Np~~ 434 (517)
++.+.+|..+..+++|+.|+|++|++ +.+|.. ..+.+..+++++||+.
T Consensus 793 ~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 793 RILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNI 840 (876)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTC
T ss_pred cccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCCC
Confidence 66666677777777777777777777 455554 2356666677777654
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.6e-40 Score=362.18 Aligned_cols=145 Identities=25% Similarity=0.257 Sum_probs=118.1
Q ss_pred cccceeecCCCCCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCC-chhhhhcccCCcEEEccCCCCcc
Q 036049 49 CSWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEI-QPEIINLSCSLKLLDLRSCGFWG 127 (517)
Q Consensus 49 C~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~ 127 (517)
|.|..|.+ .+.++++|+|++|.+++..+. .|.++++|++|+|++|.+... + |..+..+. +|++|+|++|.+.+
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~--~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~-~L~~L~Ls~N~l~~ 87 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTAS--SFPFLEQLQLLELGSQYTPLT-IDKEAFRNLP-NLRILDLGSSKIYF 87 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSS--SCSSCCSCSEEEECTTCCCCE-ECTTTTSSCT-TCCEEECTTCCCCE
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChh--HCcccccCeEEeCCCCCCccc-cCHHHhcCCC-CCCEEECCCCcCcc
Confidence 55777776 457899999999999887777 889999999999999966543 5 44555565 89999999999988
Q ss_pred cCCccCCCCCCCcEEEccCCccccccccc--ccCCccccEEEcccccccccCc-hhhhcCCcccccccccccCcc
Q 036049 128 KVPHSIGNFTRLQFLYLGFNNFSGDLLGS--IGNLRSLEAIYMSKCNFSGQIT-SSLRNLTELVVLDMAQNSYGG 199 (517)
Q Consensus 128 ~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~--~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~N~l~~ 199 (517)
..|..|+++++|++|+|++|.+++..|.. |+++++|++|+|++|.+++..+ ..|+++++|++|++++|.+++
T Consensus 88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 88888999999999999999998766655 8889999999999998886654 578888999999988887754
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.2e-39 Score=330.68 Aligned_cols=377 Identities=21% Similarity=0.208 Sum_probs=292.4
Q ss_pred Ccccce--eecCCC--------CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCch-hhhhcccCCc
Q 036049 48 CCSWDG--VHCNKN--------TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQP-EIINLSCSLK 116 (517)
Q Consensus 48 ~C~w~g--v~c~~~--------~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~L~ 116 (517)
.|.|.+ +.|... ..++++|+|++|.+++..+. .|.++++|++|++++|.+... +++ .+..+. +|+
T Consensus 7 ~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~L~~n~~~~~-i~~~~~~~l~-~L~ 82 (455)
T 3v47_A 7 ECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNET--SFSRLQDLQFLKVEQQTPGLV-IRNNTFRGLS-SLI 82 (455)
T ss_dssp CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTT--TTSSCTTCCEEECCCCSTTCE-ECTTTTTTCT-TCC
T ss_pred eeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChh--HhccCccccEEECcCCcccce-ECcccccccc-cCC
Confidence 355544 777532 25799999999999988777 899999999999999998754 544 455565 999
Q ss_pred EEEccCCCCcccCCccCCCCCCCcEEEccCCccccccccc--ccCCccccEEEcccccccccCchh-hhcCCcccccccc
Q 036049 117 LLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGS--IGNLRSLEAIYMSKCNFSGQITSS-LRNLTELVVLDMA 193 (517)
Q Consensus 117 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~--~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~l~ 193 (517)
+|++++|.+.+..|..|+++++|++|++++|.+++..+.. |..+++|++|++++|.+++..|.. +.++++|++|+++
T Consensus 83 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 162 (455)
T 3v47_A 83 ILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162 (455)
T ss_dssp EEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT
T ss_pred EEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCC
Confidence 9999999998888999999999999999999999766655 999999999999999999887776 8999999999999
Q ss_pred cccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhh
Q 036049 194 QNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKS 273 (517)
Q Consensus 194 ~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 273 (517)
+|.+++ ..+..+..-...+|+.|++++|.+.+..+...- ......+..+++|++|++++|.+++..|...
T Consensus 163 ~n~l~~------~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~----~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 232 (455)
T 3v47_A 163 FNKVKS------ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG----WEKCGNPFKNTSITTLDLSGNGFKESMAKRF 232 (455)
T ss_dssp TCCBSC------CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTT----HHHHCCTTTTCEEEEEECTTSCCCHHHHHHH
T ss_pred CCcccc------cChhhhhccccccccccccccCcccccchhhcc----ccccccccccceeeeEecCCCcccccchhhh
Confidence 999874 444444441237899999999999887543200 0000112456899999999999997766543
Q ss_pred hhc--ccccceeccCcccccccccCCC-----cc--cchhhhccceeee-----ecCccccCCCchhhhhhhhCCCCCCc
Q 036049 274 FLC--WNAMKIVNASELRYLQDVLSPS-----GK--LLMTTYDYLLTMN-----IKGRMMAYNKIPDILAGIILSNKSFD 339 (517)
Q Consensus 274 ~~~--l~~L~~L~l~~~~~l~~~~~~~-----~~--~~~~~~~~~~~~~-----~~~~~~~~~~~~~~L~~L~Ls~n~l~ 339 (517)
... ..+++.++++.+.......... .. ........+..+. +.+.........+.|+.|++++|.++
T Consensus 233 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 312 (455)
T 3v47_A 233 FDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN 312 (455)
T ss_dssp HHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred hccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccc
Confidence 322 3678888887653332111100 00 0000001122222 22223333455788999999999999
Q ss_pred ccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCCCC-C
Q 036049 340 GAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQG-K 418 (517)
Q Consensus 340 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~-~ 418 (517)
+..|..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|++|++++|++++.++.. .
T Consensus 313 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 392 (455)
T 3v47_A 313 KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD 392 (455)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhc
Confidence 988999999999999999999999888899999999999999999999888999999999999999999999877754 5
Q ss_pred cCCccCCCcccCCCCCCCCC
Q 036049 419 QFATFDNTSFDGNSGLCGKP 438 (517)
Q Consensus 419 ~~~~l~~~~~~~Np~~c~~~ 438 (517)
.+..++.+++++||+.|+||
T Consensus 393 ~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 393 RLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCTTCCEEECCSSCBCCCTT
T ss_pred cCCcccEEEccCCCcccCCC
Confidence 67889999999999999987
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8.9e-38 Score=332.52 Aligned_cols=374 Identities=18% Similarity=0.150 Sum_probs=261.3
Q ss_pred CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCC
Q 036049 60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRL 139 (517)
Q Consensus 60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 139 (517)
+.++++|+|++|.+++..+. .|.++++|++|++++|.++.. .|..+..+. +|++|++++|.+.+..|..|+++++|
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L 106 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSY--SFSNFSELQWLDLSRCEIETI-EDKAWHGLH-HLSNLILTGNPIQSFSPGSFSGLTSL 106 (606)
T ss_dssp CTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCT-TCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred CCCcCEEECCCCCcCEeChh--hccCCccCcEEeCCCCccccc-CHHHhhchh-hcCEeECCCCcccccChhhcCCcccC
Confidence 46789999999999887776 889999999999999998873 344555666 99999999999987778889999999
Q ss_pred cEEEccCCcccccccccccCCccccEEEcccccccc-cCchhhhcCCcccccccccccCcceecc--------c------
Q 036049 140 QFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSG-QITSSLRNLTELVVLDMAQNSYGGTMEI--------E------ 204 (517)
Q Consensus 140 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~N~l~~~~~~--------~------ 204 (517)
++|++++|.+++..+..|+++++|++|++++|.+++ .+|..|.++++|++|++++|.+++.... .
T Consensus 107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L 186 (606)
T 3vq2_A 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186 (606)
T ss_dssp CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEE
T ss_pred CEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccccccee
Confidence 999999999987777888899999999999998875 5688888899999999888877643200 0
Q ss_pred -------ccccccccc----------------------------------------------------------------
Q 036049 205 -------GKVHKWLLD---------------------------------------------------------------- 213 (517)
Q Consensus 205 -------~~~~~~~~~---------------------------------------------------------------- 213 (517)
..++...+.
T Consensus 187 ~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 266 (606)
T 3vq2_A 187 DMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266 (606)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEE
T ss_pred eccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhe
Confidence 000100000
Q ss_pred -------------------------------------ccCCCCCeEeccCCcccccCCCCCC-------CCCC-CCCCCC
Q 036049 214 -------------------------------------PNMQNLNALNLSHNLLTGFDQHLVL-------LPGN-NEEPRT 248 (517)
Q Consensus 214 -------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~l-------l~~~-~~~~~~ 248 (517)
+.+++|++|++++|.+..++ ...+ +.+. ......
T Consensus 267 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp-~~~l~~L~~L~l~~n~~~~~~~ 345 (606)
T 3vq2_A 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFP-TLDLPFLKSLTLTMNKGSISFK 345 (606)
T ss_dssp EECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCC-CCCCSSCCEEEEESCSSCEECC
T ss_pred eccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccc-cCCCCccceeeccCCcCccchh
Confidence 01234555555555553332 1100 0011 112224
Q ss_pred CCCCCcccEEEccCCcCCCC--CChhhhhcccccceeccCccccccc--ccCCC----------cc-------cchhhhc
Q 036049 249 GCGFSKLRIIDLSDNRFTGK--LPSKSFLCWNAMKIVNASELRYLQD--VLSPS----------GK-------LLMTTYD 307 (517)
Q Consensus 249 ~~~l~~L~~L~Ls~N~l~~~--~p~~~~~~l~~L~~L~l~~~~~l~~--~~~~~----------~~-------~~~~~~~ 307 (517)
+..+++|++|++++|.+++. +| ..+..+++|+.|+++++..... .+... .. .......
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 424 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCS-YSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECC-HHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred hccCCCCCEEECcCCccCCCcchh-hhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence 56788888888888888743 24 4466777777777776432110 00000 00 0000111
Q ss_pred cceeeeec-----CccccCCCchhhhhhhhCCCCCCcc-cCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeC
Q 036049 308 YLLTMNIK-----GRMMAYNKIPDILAGIILSNKSFDG-AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDL 381 (517)
Q Consensus 308 ~~~~~~~~-----~~~~~~~~~~~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 381 (517)
.+..+.+. +.........+.|+.|++++|.+++ .+|..+..+++|+.|+|++|++++..|..|..+++|++|+|
T Consensus 425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 504 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504 (606)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEEC
Confidence 12222221 1222233446788889999999887 47888889999999999999999888888999999999999
Q ss_pred CCCcccccCccccccCCCCCEEeccCCcccccCCCCCcCC-ccCCCcccCCCCCCCCCC
Q 036049 382 SNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFA-TFDNTSFDGNSGLCGKPL 439 (517)
Q Consensus 382 s~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~-~l~~~~~~~Np~~c~~~~ 439 (517)
++|++++..|..+..+++|++|++++|+++..++....+. .+..+++++||+.|+|+.
T Consensus 505 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 9999998889999999999999999999996555444454 488899999999999875
No 8
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.7e-37 Score=330.39 Aligned_cols=373 Identities=19% Similarity=0.164 Sum_probs=264.6
Q ss_pred CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhh-hhcccCCcEEEccCCCCcccCCccCCCCCC
Q 036049 60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEI-INLSCSLKLLDLRSCGFWGKVPHSIGNFTR 138 (517)
Q Consensus 60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 138 (517)
+..+++|||++|.|++..+. +|.++++|++|+|++|+|+. +++.. ..+. +|++|+|++|++.+..+..|.++++
T Consensus 51 p~~~~~LdLs~N~i~~l~~~--~f~~l~~L~~L~Ls~N~i~~--i~~~~f~~L~-~L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQT--IEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp CTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCE--ECTTTTTTCT-TCCEEECTTCCCCEECGGGGTTCTT
T ss_pred CcCCCEEEeeCCCCCCCCHH--HHhCCCCCCEEECCCCcCCC--cChhHhcCCC-CCCEEEccCCcCCCCCHHHhcCCCC
Confidence 35799999999999988777 89999999999999999987 66654 4555 9999999999997777778999999
Q ss_pred CcEEEccCCcccccccccccCCccccEEEcccccccc-cCchhhhcCCcccccccccccCcceecc--------------
Q 036049 139 LQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSG-QITSSLRNLTELVVLDMAQNSYGGTMEI-------------- 203 (517)
Q Consensus 139 L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~N~l~~~~~~-------------- 203 (517)
|++|+|++|++++..+..|+++++|++|++++|.+++ ..|..+..+++|++|++++|++++...-
T Consensus 126 L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~ 205 (635)
T 4g8a_A 126 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 205 (635)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCE
T ss_pred CCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhh
Confidence 9999999999998777789999999999999999975 4678889999999999999987643200
Q ss_pred ---c----ccc---------------------------------------------------------------------
Q 036049 204 ---E----GKV--------------------------------------------------------------------- 207 (517)
Q Consensus 204 ---~----~~~--------------------------------------------------------------------- 207 (517)
. ..+
T Consensus 206 ~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 285 (635)
T 4g8a_A 206 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 285 (635)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEE
T ss_pred hhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhh
Confidence 0 000
Q ss_pred -------------ccccc--------------------cccCCCCCeEeccCCcccccCCCC------------------
Q 036049 208 -------------HKWLL--------------------DPNMQNLNALNLSHNLLTGFDQHL------------------ 236 (517)
Q Consensus 208 -------------~~~~~--------------------~~~l~~L~~L~Ls~n~l~~~~~~~------------------ 236 (517)
+..+. .....+|+.|++.+|.+.......
T Consensus 286 l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 365 (635)
T 4g8a_A 286 FRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 365 (635)
T ss_dssp EEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBC
T ss_pred hhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCc
Confidence 00000 001234555555555443332110
Q ss_pred ---CC-------CCCC-C----CCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCc-c
Q 036049 237 ---VL-------LPGN-N----EEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSG-K 300 (517)
Q Consensus 237 ---~l-------l~~~-~----~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~-~ 300 (517)
.+ +..+ + ..+..+..+.+|++++++.|.+. .++. .+..++.|+.+++.............. .
T Consensus 366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 443 (635)
T 4g8a_A 366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLS 443 (635)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECS-CCTTCTTCCEEECTTSEEESTTSSCTTTT
T ss_pred ccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccc-cccccccccchhhhhcccccccccccccc
Confidence 00 0011 0 11122234566777777777665 2332 255566666666655332221111000 0
Q ss_pred cchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCc-ccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCee
Q 036049 301 LLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFD-GAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESL 379 (517)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 379 (517)
........+....+...........+.++.|++++|.+. +..|..|..+++|++|+|++|++++..|..|.++++|++|
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L 523 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEE
Confidence 000001111111222223334455778999999999854 4577889999999999999999999899999999999999
Q ss_pred eCCCCcccccCccccccCCCCCEEeccCCcccccCCCCC-cC-CccCCCcccCCCCCCCCCC
Q 036049 380 DLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGK-QF-ATFDNTSFDGNSGLCGKPL 439 (517)
Q Consensus 380 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~-~~-~~l~~~~~~~Np~~c~~~~ 439 (517)
+|++|+|++..|..|..+++|++|++++|+|++.+|... .+ .+++.+++++|||.|+|.+
T Consensus 524 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp ECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred ECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 999999998888899999999999999999999998753 33 5788999999999999864
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.6e-37 Score=315.35 Aligned_cols=338 Identities=16% Similarity=0.116 Sum_probs=246.2
Q ss_pred cceeecCC---------CCCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEcc
Q 036049 51 WDGVHCNK---------NTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLR 121 (517)
Q Consensus 51 w~gv~c~~---------~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls 121 (517)
|..+.|.. -..+++.|+|++|.+++..+. .|.++++|++|+|++|.++.. .|..+..+. +|++|+|+
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~-~L~~L~L~ 88 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQD--EFASFPHLEELELNENIVSAV-EPGAFNNLF-NLRTLGLR 88 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTT--TTTTCTTCCEEECTTSCCCEE-CTTTTTTCT-TCCEEECC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHh--HccCCCCCCEEECCCCccCEe-ChhhhhCCc-cCCEEECC
Confidence 45677742 235789999999999887776 899999999999999999873 355666666 99999999
Q ss_pred CCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCccee
Q 036049 122 SCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTM 201 (517)
Q Consensus 122 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 201 (517)
+|.+....+..|.++++|++|+|++|.+.+..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.++
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--- 165 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT--- 165 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS---
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc---
Confidence 99997666667899999999999999999888888999999999999999999888888999999999999999887
Q ss_pred cccccccc-ccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhccccc
Q 036049 202 EIEGKVHK-WLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAM 280 (517)
Q Consensus 202 ~~~~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L 280 (517)
.++. .+.. +++|+.|++++|.+.+..+. .+..+++|++|++++|.+.+.+|...+.. .+|
T Consensus 166 ----~~~~~~l~~--l~~L~~L~l~~n~i~~~~~~------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L 226 (477)
T 2id5_A 166 ----SIPTEALSH--LHGLIVLRLRHLNINAIRDY------------SFKRLYRLKVLEISHWPYLDTMTPNCLYG-LNL 226 (477)
T ss_dssp ----SCCHHHHTT--CTTCCEEEEESCCCCEECTT------------CSCSCTTCCEEEEECCTTCCEECTTTTTT-CCC
T ss_pred ----ccChhHhcc--cCCCcEEeCCCCcCcEeChh------------hcccCcccceeeCCCCccccccCcccccC-ccc
Confidence 3443 3444 89999999999999887543 45778899999999998877777654432 366
Q ss_pred ceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCc
Q 036049 281 KIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNN 360 (517)
Q Consensus 281 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 360 (517)
+.|+++++.... .........+.|+.|++++|.+++..+..|..+++|+.|+|++|
T Consensus 227 ~~L~l~~n~l~~------------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (477)
T 2id5_A 227 TSLSITHCNLTA------------------------VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG 282 (477)
T ss_dssp SEEEEESSCCCS------------------------CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSS
T ss_pred cEEECcCCcccc------------------------cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCC
Confidence 666665522110 00001112456777777777777666666777777777777777
Q ss_pred cccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCCCCCcCCccCCCcccCCCCCCCCC
Q 036049 361 NLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKP 438 (517)
Q Consensus 361 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~Np~~c~~~ 438 (517)
++++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+....+.......+.++...|..|
T Consensus 283 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 283 QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp CCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred ccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence 777666777777777777777777777655556666777777777777776554322222222334555666666443
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.8e-37 Score=322.98 Aligned_cols=378 Identities=19% Similarity=0.237 Sum_probs=250.8
Q ss_pred CcccceeecCCC-----------CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCc
Q 036049 48 CCSWDGVHCNKN-----------TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLK 116 (517)
Q Consensus 48 ~C~w~gv~c~~~-----------~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~ 116 (517)
.|.|.|+ |+.. ..++++|+|++|.+++..+. .|.++++|++|++++|++++. .|..+..+. +|+
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~-~L~ 77 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHG--DLRACANLQVLILKSSRINTI-EGDAFYSLG-SLE 77 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSS--TTSSCTTCCEEECTTSCCCEE-CTTTTTTCT-TCC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChh--hhhcCCcccEEECCCCCcCcc-Chhhccccc-cCC
Confidence 4777776 6421 24789999999998877766 788899999999999988773 334555665 899
Q ss_pred EEEccCCCCcccCCccCCCCCCCcEEEccCCcccc-cccccccCCccccEEEcccccccccC-chhhhcCCccccccccc
Q 036049 117 LLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSG-DLLGSIGNLRSLEAIYMSKCNFSGQI-TSSLRNLTELVVLDMAQ 194 (517)
Q Consensus 117 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~-~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~l~~ 194 (517)
+|++++|.+.+..|..|+++++|++|++++|.+++ ..|..|+++++|++|++++|.+.+.+ +..|.++++|++|++++
T Consensus 78 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157 (549)
T ss_dssp EEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence 99999998877666668888899999999998885 35677888888888888888843344 46788888888888888
Q ss_pred ccCcceecc-----------------ccccccccccccCCCCCeEeccCCcccccCCCC----CCC--------------
Q 036049 195 NSYGGTMEI-----------------EGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHL----VLL-------------- 239 (517)
Q Consensus 195 N~l~~~~~~-----------------~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~ll-------------- 239 (517)
|.+++.... .+.+|..+.. .+++|++|++++|.+++..... ...
T Consensus 158 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 236 (549)
T 2z81_A 158 LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD-ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT 236 (549)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHH-STTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEE
T ss_pred CcccccChhhhhccccCceEecccCcccccchhhHh-hcccccEEEccCCccccccccccchhhhhhcccceeccccccc
Confidence 887752210 0112222211 2788999999999988752100 000
Q ss_pred ---------------------------CC--CCC-----CCCC--------------------------CCCCCcccEEE
Q 036049 240 ---------------------------PG--NNE-----EPRT--------------------------GCGFSKLRIID 259 (517)
Q Consensus 240 ---------------------------~~--~~~-----~~~~--------------------------~~~l~~L~~L~ 259 (517)
.+ .++ .... +...++|+.|+
T Consensus 237 ~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~ 316 (549)
T 2z81_A 237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316 (549)
T ss_dssp HHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEE
T ss_pred hhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEE
Confidence 00 000 0000 01124677777
Q ss_pred ccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccc-------cCCCchhhhhhhh
Q 036049 260 LSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMM-------AYNKIPDILAGII 332 (517)
Q Consensus 260 Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~L~~L~ 332 (517)
+++|.+. .+|...+..+++|+.|+++++.......... ........+..+.+.+... .....+++|+.|+
T Consensus 317 l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ 393 (549)
T 2z81_A 317 VENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNS--ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD 393 (549)
T ss_dssp EESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHH--TCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEE
T ss_pred eccCccc-cCCHHHHhcCccccEEEccCCccccccccch--hhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEE
Confidence 7777776 7787766778888888888754332110000 0000011111222211111 1123356677777
Q ss_pred CCCCCCcccCcccccCCCCCCeEeCcCccccccCChh------------------ccCCCCCCeeeCCCCcccccCcccc
Q 036049 333 LSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSC------------------LGNLTNLESLDLSNNKFSGRIPQQL 394 (517)
Q Consensus 333 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~------------------l~~l~~L~~L~Ls~N~l~~~~p~~l 394 (517)
+++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|++|+|++|+++ .+|. .
T Consensus 394 Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~ 469 (549)
T 2z81_A 394 ISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-A 469 (549)
T ss_dssp CTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-G
T ss_pred CCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-c
Confidence 7777777 56666666677777777777665 22222 136789999999999998 6665 4
Q ss_pred ccCCCCCEEeccCCcccccCCCC-CcCCccCCCcccCCCCCCCCC
Q 036049 395 VELTFLAFFNVSDNYLTGLIPQG-KQFATFDNTSFDGNSGLCGKP 438 (517)
Q Consensus 395 ~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~Np~~c~~~ 438 (517)
..+++|++|++++|++++.+|.. ..+..+..+++++||+.|+|+
T Consensus 470 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 470 SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 67899999999999999988863 567888999999999999886
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-35 Score=311.87 Aligned_cols=366 Identities=19% Similarity=0.172 Sum_probs=230.7
Q ss_pred CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCch-hhhhcccCCcEEEccCCCCcccCCccCCCCCCC
Q 036049 61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQP-EIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRL 139 (517)
Q Consensus 61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 139 (517)
.+++.|+|++|.+++..+. +|.++++|++|+|++|.++. +++ .+..+. +|++|++++|.+.+..|..|+++++|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~--i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQT--IEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSL 102 (570)
T ss_dssp SSCCEEECCSCCCCEECTT--TTTTCSSCCEEECTTCCCCE--ECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred ccccEEEccCCccCccChh--HhhCCCCceEEECCCCcCCc--cCcccccCch-hCCEEeCcCCcCCccCHhhhcCcccc
Confidence 4567777777777665555 66677777777777777665 333 333444 77777777777665555666777777
Q ss_pred cEEEccCCcccccccccccCCccccEEEcccccccc-cCchhhhcCCcccccccccccCcceec----------------
Q 036049 140 QFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSG-QITSSLRNLTELVVLDMAQNSYGGTME---------------- 202 (517)
Q Consensus 140 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~N~l~~~~~---------------- 202 (517)
++|++++|.+++..+..|+++++|++|++++|.+++ .+|..|.++++|++|++++|.+++...
T Consensus 103 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L 182 (570)
T 2z63_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182 (570)
T ss_dssp CEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEE
T ss_pred ccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhc
Confidence 777777776665444456666677777777766664 346666666666666666666543210
Q ss_pred --------------------------------------------------------------------------------
Q 036049 203 -------------------------------------------------------------------------------- 202 (517)
Q Consensus 203 -------------------------------------------------------------------------------- 202 (517)
T Consensus 183 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 262 (570)
T 2z63_A 183 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262 (570)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEE
T ss_pred ccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhh
Confidence
Q ss_pred -------cccccccccccccCCCCCeEeccCCcccccCCCCCCC-------CC----CCCC------------------C
Q 036049 203 -------IEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLL-------PG----NNEE------------------P 246 (517)
Q Consensus 203 -------~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll-------~~----~~~~------------------~ 246 (517)
+.+.++..+.. +++|++|++++|.+++++....-. .+ .++. .
T Consensus 263 ~l~~~~~~~~~~~~~~~~--l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~ 340 (570)
T 2z63_A 263 RLAYLDYYLDDIIDLFNC--LTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 340 (570)
T ss_dssp EEEETTEEESCSTTTTGG--GTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCB
T ss_pred hhhcchhhhhhchhhhcC--cCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccc
Confidence 00111122222 456666666666666543321000 00 0000 0
Q ss_pred CCCCCCCcccEEEccCCcCCCCCC-hhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeec-----Cccc-
Q 036049 247 RTGCGFSKLRIIDLSDNRFTGKLP-SKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIK-----GRMM- 319 (517)
Q Consensus 247 ~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~- 319 (517)
.....+++|++|++++|.+++... ...+..+++|+.|+++++....... .......+..+.+. +...
T Consensus 341 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~ 414 (570)
T 2z63_A 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS------NFLGLEQLEHLDFQHSNLKQMSEF 414 (570)
T ss_dssp CCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE------EEETCTTCCEEECTTSEEESCTTS
T ss_pred cccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc------cccccCCCCEEEccCCccccccch
Confidence 000234455555555555542210 1234445555555555432111000 00011112222222 2111
Q ss_pred cCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCcccc-ccCChhccCCCCCCeeeCCCCcccccCccccccCC
Q 036049 320 AYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQ-GHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELT 398 (517)
Q Consensus 320 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 398 (517)
......+.|+.|++++|.+.+..|..+..+++|+.|++++|.++ +.+|..+..+++|++|+|++|++++..|..+..++
T Consensus 415 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 494 (570)
T 2z63_A 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494 (570)
T ss_dssp CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhccc
Confidence 23344678999999999999989999999999999999999997 57899999999999999999999988899999999
Q ss_pred CCCEEeccCCcccccCCCC-CcCCccCCCcccCCCCCCCCCC
Q 036049 399 FLAFFNVSDNYLTGLIPQG-KQFATFDNTSFDGNSGLCGKPL 439 (517)
Q Consensus 399 ~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~Np~~c~~~~ 439 (517)
+|++|++++|++++.+|.. ..+..++.+++++||+.|+|+.
T Consensus 495 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 9999999999999988764 5678889999999999998764
No 12
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.4e-36 Score=302.61 Aligned_cols=310 Identities=19% Similarity=0.175 Sum_probs=248.6
Q ss_pred CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCch-hhhhcccCCcEEEccCCCCcccCCccCCCCCCC
Q 036049 61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQP-EIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRL 139 (517)
Q Consensus 61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 139 (517)
.+++.|+++++.++...+. .+..+++|++|++++|.++. +++ .+..+. +|++|++++|.+.+..|..|+++++|
T Consensus 45 ~~l~~l~l~~~~l~~l~~~--~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAA--LLDSFRQVELLNLNDLQIEE--IDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp CCCSEEEEESCEESEECTH--HHHHCCCCSEEECTTSCCCE--ECTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCceEEEecCCchhhCChh--HhcccccCcEEECCCCcccc--cChhhccCCC-CcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 5678889998888755443 57888999999999999876 444 455555 99999999999987777888999999
Q ss_pred cEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCC
Q 036049 140 QFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNL 219 (517)
Q Consensus 140 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L 219 (517)
++|++++|.++...+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++ ++ +.. +++|
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~--~~~--l~~L 188 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-------VD--LSL--IPSL 188 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-------CC--GGG--CTTC
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-------cc--ccc--cccc
Confidence 999999999985545557889999999999999987777888899999999999998873 22 222 7889
Q ss_pred CeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCc
Q 036049 220 NALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSG 299 (517)
Q Consensus 220 ~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 299 (517)
++|++++|.++++ ...++|++|++++|.+. .+|.. ..++|+.|+++++.....
T Consensus 189 ~~L~l~~n~l~~~-----------------~~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~------ 241 (390)
T 3o6n_A 189 FHANVSYNLLSTL-----------------AIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT------ 241 (390)
T ss_dssp SEEECCSSCCSEE-----------------ECCSSCSEEECCSSCCC-EEECC---CCSSCCEEECCSSCCCCC------
T ss_pred ceeeccccccccc-----------------CCCCcceEEECCCCeee-ecccc---ccccccEEECCCCCCccc------
Confidence 9999999988765 23457889999999887 44432 245777777776332210
Q ss_pred ccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCee
Q 036049 300 KLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESL 379 (517)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 379 (517)
......+.|+.|++++|.+++..|..+..+++|+.|+|++|+++ .+|..+..+++|++|
T Consensus 242 --------------------~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L 300 (390)
T 3o6n_A 242 --------------------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVL 300 (390)
T ss_dssp --------------------GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEE
T ss_pred --------------------HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEE
Confidence 11223678999999999999988999999999999999999998 467677889999999
Q ss_pred eCCCCcccccCccccccCCCCCEEeccCCcccccCCCCCcCCccCCCcccCCCCCCCC
Q 036049 380 DLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGK 437 (517)
Q Consensus 380 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~Np~~c~~ 437 (517)
+|++|+++ .+|..+..+++|++|++++|+++... ...+..+..+++++||+.|++
T Consensus 301 ~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 301 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp ECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHH
T ss_pred ECCCCcce-ecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCccchh
Confidence 99999998 67778889999999999999998764 456788999999999999965
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.4e-36 Score=316.93 Aligned_cols=303 Identities=19% Similarity=0.197 Sum_probs=204.9
Q ss_pred cEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccc
Q 036049 116 KLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQN 195 (517)
Q Consensus 116 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N 195 (517)
++|++++|.+.+..+..|+.+++|++|++++|.++ .+|..+..+++|++|++++|.+++..|..+.++++|++|++++|
T Consensus 257 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 335 (606)
T 3t6q_A 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335 (606)
T ss_dssp EEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSC
T ss_pred eEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCC
Confidence 33444444443333444556666666666666666 55666666666666666666666555666666666666666666
Q ss_pred cCcceeccccccccc-cccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhh
Q 036049 196 SYGGTMEIEGKVHKW-LLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSF 274 (517)
Q Consensus 196 ~l~~~~~~~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 274 (517)
.+.+ .++.. +.. +++|++|++++|.+++.... +..+..+++|++|++++|.+.+ ++...+
T Consensus 336 ~~~~------~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~----------~~~~~~l~~L~~L~l~~n~l~~-~~~~~~ 396 (606)
T 3t6q_A 336 TKRL------ELGTGCLEN--LENLRELDLSHDDIETSDCC----------NLQLRNLSHLQSLNLSYNEPLS-LKTEAF 396 (606)
T ss_dssp SSCC------BCCSSTTTT--CTTCCEEECCSSCCCEEEES----------TTTTTTCTTCCEEECCSCSCEE-ECTTTT
T ss_pred Cccc------ccchhhhhc--cCcCCEEECCCCccccccCc----------chhcccCCCCCEEECCCCcCCc-CCHHHh
Confidence 5542 33332 333 67777777777777665310 1235677888888888888874 444557
Q ss_pred hcccccceeccCcccccccccCC-CcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCccc---CcccccCCC
Q 036049 275 LCWNAMKIVNASELRYLQDVLSP-SGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGA---IPASISNLK 350 (517)
Q Consensus 275 ~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~---~p~~~~~l~ 350 (517)
..+++|+.|+++++......... ...........+....+.+........++.|+.|++++|.+.+. .+..+..++
T Consensus 397 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~ 476 (606)
T 3t6q_A 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG 476 (606)
T ss_dssp TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCT
T ss_pred cCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCC
Confidence 77788888888774432211110 00001111111112222223333344578899999999999873 335688999
Q ss_pred CCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCCCC-CcCCccCCCccc
Q 036049 351 GLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQG-KQFATFDNTSFD 429 (517)
Q Consensus 351 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~ 429 (517)
+|+.|+|++|++++..|..|..+++|++|+|++|++++..|..+..++.| +|++++|++++.+|.. ..+..++.++++
T Consensus 477 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 555 (606)
T 3t6q_A 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLR 555 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECT
T ss_pred CccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCC
Confidence 99999999999998889999999999999999999999999999999999 9999999999888764 456788899999
Q ss_pred CCCCCCCCCC
Q 036049 430 GNSGLCGKPL 439 (517)
Q Consensus 430 ~Np~~c~~~~ 439 (517)
+||+.|+|+.
T Consensus 556 ~N~~~c~c~~ 565 (606)
T 3t6q_A 556 QNPLDCTCSN 565 (606)
T ss_dssp TCCEECSGGG
T ss_pred CCCccccCCc
Confidence 9999998863
No 14
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.1e-36 Score=308.04 Aligned_cols=324 Identities=19% Similarity=0.211 Sum_probs=272.6
Q ss_pred EEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEE
Q 036049 64 VKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLY 143 (517)
Q Consensus 64 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 143 (517)
+.++.++++++. +|. .+ .+++++|+|++|.++.. .+..+..+. +|++|+|++|.+.+..|..|.++++|++|+
T Consensus 14 ~~v~c~~~~l~~-ip~--~~--~~~l~~L~L~~n~l~~~-~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 86 (477)
T 2id5_A 14 RAVLCHRKRFVA-VPE--GI--PTETRLLDLGKNRIKTL-NQDEFASFP-HLEELELNENIVSAVEPGAFNNLFNLRTLG 86 (477)
T ss_dssp TEEECCSCCCSS-CCS--CC--CTTCSEEECCSSCCCEE-CTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CEEEeCCCCcCc-CCC--CC--CCCCcEEECCCCccceE-CHhHccCCC-CCCEEECCCCccCEeChhhhhCCccCCEEE
Confidence 467888888874 443 33 36899999999999873 344566666 999999999999888899999999999999
Q ss_pred ccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEe
Q 036049 144 LGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALN 223 (517)
Q Consensus 144 Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 223 (517)
|++|.++...+..|.++++|++|+|++|.+.+..+..|.++++|++|++++|.+.+ ..+..+.. +++|++|+
T Consensus 87 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~--l~~L~~L~ 158 (477)
T 2id5_A 87 LRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY------ISHRAFSG--LNSLEQLT 158 (477)
T ss_dssp CCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE------ECTTSSTT--CTTCCEEE
T ss_pred CCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccce------eChhhccC--CCCCCEEE
Confidence 99999997766778999999999999999998889999999999999999999873 33445555 99999999
Q ss_pred ccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccch
Q 036049 224 LSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLM 303 (517)
Q Consensus 224 Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 303 (517)
+++|.++++++. .+..+++|+.|++++|.+. .++...|..+++|+.|+++++..+......
T Consensus 159 l~~n~l~~~~~~------------~l~~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~------ 219 (477)
T 2id5_A 159 LEKCNLTSIPTE------------ALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPN------ 219 (477)
T ss_dssp EESCCCSSCCHH------------HHTTCTTCCEEEEESCCCC-EECTTCSCSCTTCCEEEEECCTTCCEECTT------
T ss_pred CCCCcCcccChh------------HhcccCCCcEEeCCCCcCc-EeChhhcccCcccceeeCCCCccccccCcc------
Confidence 999999886543 3577899999999999998 566667889999999998875544321110
Q ss_pred hhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCC
Q 036049 304 TTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN 383 (517)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 383 (517)
.. ...+|+.|++++|.+++..+..+..+++|+.|+|++|.+++..+..|..+++|++|+|++
T Consensus 220 -----------------~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (477)
T 2id5_A 220 -----------------CL-YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG 281 (477)
T ss_dssp -----------------TT-TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCS
T ss_pred -----------------cc-cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCC
Confidence 00 123799999999999966557889999999999999999988888899999999999999
Q ss_pred CcccccCccccccCCCCCEEeccCCcccccCCCC-CcCCccCCCcccCCCCCCCCCC
Q 036049 384 NKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQG-KQFATFDNTSFDGNSGLCGKPL 439 (517)
Q Consensus 384 N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~Np~~c~~~~ 439 (517)
|++++..|..|..+++|++|++++|++++..+.. ..+..++.+++++||+.|+|+.
T Consensus 282 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~ 338 (477)
T 2id5_A 282 GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL 338 (477)
T ss_dssp SCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred CccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence 9999999999999999999999999999877654 4567888999999999999753
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=9.3e-36 Score=315.63 Aligned_cols=333 Identities=19% Similarity=0.193 Sum_probs=259.2
Q ss_pred CCCCCCCCCCCCCCcc----cceeecCC----------------CCCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEc
Q 036049 35 TMASWKPEEGNVDCCS----WDGVHCNK----------------NTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNL 94 (517)
Q Consensus 35 ~~~~w~~~~~~~~~C~----w~gv~c~~----------------~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L 94 (517)
.+++|.. ..+||. |.++.|.. ...+++.|++++|.+....+. .+..+++|++|+|
T Consensus 8 ~l~~~~~---~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~--~~~~l~~L~~L~L 82 (597)
T 3oja_B 8 NVKPRQP---EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA--LLDSFRQVELLNL 82 (597)
T ss_dssp ---CCCS---EECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTH--HHHHCCCCSEEEC
T ss_pred cccCCCC---CCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHH--HHccCCCCcEEEC
Confidence 4678876 456664 66655531 014578889999988765544 6788999999999
Q ss_pred CCCCCCCCCCch-hhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccc
Q 036049 95 ALNDFNSSEIQP-EIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNF 173 (517)
Q Consensus 95 s~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l 173 (517)
++|.+++ +++ .+..+. +|++|+|++|.+.+..|..|+++++|++|+|++|.+++..+..|+++++|++|+|++|.+
T Consensus 83 ~~n~l~~--~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l 159 (597)
T 3oja_B 83 NDLQIEE--IDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 159 (597)
T ss_dssp TTSCCCE--ECTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCCCC--CChHHhcCCC-CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC
Confidence 9999987 444 555665 999999999999887788889999999999999999966666678999999999999999
Q ss_pred cccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCC
Q 036049 174 SGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFS 253 (517)
Q Consensus 174 ~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~ 253 (517)
++..|..|.++++|++|++++|.+++ ++ +.. +++|+.|++++|.++++ ...+
T Consensus 160 ~~~~~~~~~~l~~L~~L~L~~N~l~~-------~~--~~~--l~~L~~L~l~~n~l~~l-----------------~~~~ 211 (597)
T 3oja_B 160 ERIEDDTFQATTSLQNLQLSSNRLTH-------VD--LSL--IPSLFHANVSYNLLSTL-----------------AIPI 211 (597)
T ss_dssp CBCCTTTTTTCTTCCEEECTTSCCSB-------CC--GGG--CTTCSEEECCSSCCSEE-----------------ECCT
T ss_pred CCCChhhhhcCCcCcEEECcCCCCCC-------cC--hhh--hhhhhhhhcccCccccc-----------------cCCc
Confidence 98888889999999999999998873 22 222 78899999999988875 2345
Q ss_pred cccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhC
Q 036049 254 KLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIIL 333 (517)
Q Consensus 254 ~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 333 (517)
+|+.|++++|.+. .+|... ..+|+.|+++++.... ......++.|+.|++
T Consensus 212 ~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--------------------------~~~l~~l~~L~~L~L 261 (597)
T 3oja_B 212 AVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD--------------------------TAWLLNYPGLVEVDL 261 (597)
T ss_dssp TCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCC--------------------------CGGGGGCTTCSEEEC
T ss_pred hhheeeccCCccc-cccccc---CCCCCEEECCCCCCCC--------------------------ChhhccCCCCCEEEC
Confidence 7888899988887 444322 2567777777633221 011223577999999
Q ss_pred CCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCccccc
Q 036049 334 SNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGL 413 (517)
Q Consensus 334 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 413 (517)
++|.+.+..|..|..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|++|++++|++++.
T Consensus 262 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~ 339 (597)
T 3oja_B 262 SYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL 339 (597)
T ss_dssp CSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred CCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc
Confidence 9999998888899999999999999999985 5777778999999999999998 6788888899999999999999876
Q ss_pred CCCCCcCCccCCCcccCCCCCCCC
Q 036049 414 IPQGKQFATFDNTSFDGNSGLCGK 437 (517)
Q Consensus 414 ~p~~~~~~~l~~~~~~~Np~~c~~ 437 (517)
. ...+..+..+++++||+.|++
T Consensus 340 ~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 340 K--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp C--CCTTCCCSEEECCSSCEEHHH
T ss_pred C--hhhcCCCCEEEeeCCCCCChh
Confidence 4 345778888999999998864
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.6e-35 Score=315.76 Aligned_cols=332 Identities=17% Similarity=0.211 Sum_probs=267.9
Q ss_pred CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCC-CCCCCCchhhhhc------ccCCcEEEccCCCCcccCCc-
Q 036049 60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALND-FNSSEIQPEIINL------SCSLKLLDLRSCGFWGKVPH- 131 (517)
Q Consensus 60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~------~~~L~~L~Ls~n~l~~~~p~- 131 (517)
..+++.|+|++|.+.+.+|. .+.++++|++|++++|+ +++..+|..+..+ . +|++|++++|.+. .+|.
T Consensus 248 l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~-~L~~L~L~~n~l~-~ip~~ 323 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPT--FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE-KIQIIYIGYNNLK-TFPVE 323 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCT--TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGG-TCCEEECCSSCCS-SCCCH
T ss_pred cCCCCEEEecCCcCCccChH--HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCC-CCCEEECCCCcCC-ccCch
Confidence 35799999999999999988 99999999999999998 8761288888876 5 9999999999996 8898
Q ss_pred -cCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCc-ccccccccccCcceecccccccc
Q 036049 132 -SIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTE-LVVLDMAQNSYGGTMEIEGKVHK 209 (517)
Q Consensus 132 -~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~l~~N~l~~~~~~~~~~~~ 209 (517)
.|+++++|++|++++|.+++.+| .|+.+++|++|++++|.++ .+|..+.++++ |++|++++|.++ .+|.
T Consensus 324 ~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-------~lp~ 394 (636)
T 4eco_A 324 TSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-------YIPN 394 (636)
T ss_dssp HHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-------SCCS
T ss_pred hhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-------ccch
Confidence 89999999999999999998899 9999999999999999999 88889999999 999999999987 6777
Q ss_pred ccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCccc
Q 036049 210 WLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELR 289 (517)
Q Consensus 210 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~ 289 (517)
.+....+++|++|++++|.+++..+...- +.......+++|++|++++|.++ .+|...+..+++|+.|+++++.
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-----~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFD-----PLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSC-----TTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSC
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhc-----ccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCC
Confidence 66652345899999999999986554200 00111126779999999999998 8898888889999999999854
Q ss_pred ccccccCCCcccc--------hhhhccceeeeecCccccCC-CchhhhhhhhCCCCCCcccCcccccCCCCCCeEeC---
Q 036049 290 YLQDVLSPSGKLL--------MTTYDYLLTMNIKGRMMAYN-KIPDILAGIILSNKSFDGAIPASISNLKGLQVLNL--- 357 (517)
Q Consensus 290 ~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L--- 357 (517)
.. .......... ......+....+...+..+. ..++.|+.|++++|.+++ +|..+..+++|+.|+|
T Consensus 469 l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 469 LT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ 546 (636)
T ss_dssp CS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSC
T ss_pred CC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCC
Confidence 33 1111111100 11111222222332333332 256789999999999997 8999999999999999
Q ss_pred ---cCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCC
Q 036049 358 ---HNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIP 415 (517)
Q Consensus 358 ---s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 415 (517)
++|++.+.+|..+..+++|++|+|++|++ +.+|..+. ++|+.|++++|++....+
T Consensus 547 ~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred cccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccccH
Confidence 56788889999999999999999999999 47888766 899999999999886544
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.5e-34 Score=304.81 Aligned_cols=356 Identities=20% Similarity=0.204 Sum_probs=269.7
Q ss_pred CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCC
Q 036049 60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRL 139 (517)
Q Consensus 60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 139 (517)
+..+++|+|++|.+++..+. .|.++++|++|+|++|.+... .|..+..+. +|++|++++|.+.+..|..|+++++|
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L 107 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNT--TFSRLINLTFLDLTRCQIYWI-HEDTFQSQH-RLDTLVLTANPLIFMAETALSGPKAL 107 (606)
T ss_dssp CTTCCEEECTTCCCSEECTT--TSTTCTTCSEEECTTCCCCEE-CTTTTTTCT-TCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred CCcCcEEEccCCccCcCChh--HhccCccceEEECCCCcccee-ChhhccCcc-ccCeeeCCCCcccccChhhhcccccc
Confidence 35799999999999988777 899999999999999999873 455666776 99999999999988889999999999
Q ss_pred cEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCC
Q 036049 140 QFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNL 219 (517)
Q Consensus 140 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L 219 (517)
++|++++|.+++..+..|+++++|++|++++|.+++..+..+..+++|++|++++|.+++ ..+..+.. +++|
T Consensus 108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~--l~~L 179 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY------LSKEDMSS--LQQA 179 (606)
T ss_dssp CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE------ECHHHHHT--TTTC
T ss_pred cEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccc------cChhhhhh--hccc
Confidence 999999999998778889999999999999999997554556669999999999999873 33444555 8888
Q ss_pred C--eEeccCCcccccCCCCCCC--------CC------------------------------------------------
Q 036049 220 N--ALNLSHNLLTGFDQHLVLL--------PG------------------------------------------------ 241 (517)
Q Consensus 220 ~--~L~Ls~n~l~~~~~~~~ll--------~~------------------------------------------------ 241 (517)
+ +|++++|.+++.++...-. .+
T Consensus 180 ~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L 259 (606)
T 3t6q_A 180 TNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259 (606)
T ss_dssp CSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEE
T ss_pred ceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEE
Confidence 8 8899999888776543110 00
Q ss_pred ----C-C--CCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeee
Q 036049 242 ----N-N--EEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNI 314 (517)
Q Consensus 242 ----~-~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 314 (517)
. + ..+..+..+++|++|++++|.++ .+|.. +..+++|+.|+++++....... ........+..+.+
T Consensus 260 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~-l~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSG-LVGLSTLKKLVLSANKFENLCQ-----ISASNFPSLTHLSI 332 (606)
T ss_dssp ECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSS-CCSCTTCCEEECTTCCCSBGGG-----GCGGGCTTCSEEEC
T ss_pred EeecCccCccCHHHhccccCCCEEeccCCccC-CCChh-hcccccCCEEECccCCcCcCch-----hhhhccCcCCEEEC
Confidence 0 0 01122556677777777777776 66643 5666777777776643221100 00111122222222
Q ss_pred cCc------cccCCCchhhhhhhhCCCCCCcccC--cccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcc
Q 036049 315 KGR------MMAYNKIPDILAGIILSNKSFDGAI--PASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 386 (517)
Q Consensus 315 ~~~------~~~~~~~~~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 386 (517)
.+. ........+.|+.|++++|.+.+.. +..+..+++|++|++++|++.+..|..|..+++|++|++++|++
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence 221 1222344678999999999998765 67788899999999999999888888899999999999999999
Q ss_pred cccCccc-cccCCCCCEEeccCCcccccCCCC-CcCCccCCCcccCCCCC
Q 036049 387 SGRIPQQ-LVELTFLAFFNVSDNYLTGLIPQG-KQFATFDNTSFDGNSGL 434 (517)
Q Consensus 387 ~~~~p~~-l~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~Np~~ 434 (517)
++..+.. +..+++|++|++++|.+++.+|.. ..++.++.+++++|+..
T Consensus 413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 462 (606)
T 3t6q_A 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462 (606)
T ss_dssp ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCG
T ss_pred CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCC
Confidence 8776544 888999999999999999887764 46788888899998753
No 18
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6e-35 Score=318.22 Aligned_cols=324 Identities=27% Similarity=0.365 Sum_probs=198.1
Q ss_pred CcEEEEEcCCCCceeeeCCCcccccCC-CCCEEEcCCCCCCCCCCchhhhh--cccCCcEEEccCCCCcccCCccCCCCC
Q 036049 61 GHVVKLNLSHSCLFGSINSSSSLYKLV-HLEWLNLALNDFNSSEIQPEIIN--LSCSLKLLDLRSCGFWGKVPHSIGNFT 137 (517)
Q Consensus 61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~p~~~~~l~ 137 (517)
.+++.|++++|.+++.+|. .+.+++ +|++|++++|.+++. +|+.+.. +. +|++|++++|.+.+.+|..|++++
T Consensus 343 ~~L~~L~Ls~n~l~~~~p~--~l~~l~~~L~~L~Ls~N~l~~~-~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~l~~l~ 418 (768)
T 3rgz_A 343 RGLKVLDLSFNEFSGELPE--SLTNLSASLLTLDLSSNNFSGP-ILPNLCQNPKN-TLQELYLQNNGFTGKIPPTLSNCS 418 (768)
T ss_dssp TTCCEEECCSSEEEECCCT--THHHHTTTCSEEECCSSEEEEE-CCTTTTCSTTC-CCCEEECCSSEEEEECCGGGGGCT
T ss_pred CCCCEEeCcCCccCccccH--HHHhhhcCCcEEEccCCCcCCC-cChhhhhcccC-CccEEECCCCccccccCHHHhcCC
Confidence 4677777777777766666 666665 677777776666543 4444433 33 566666666666555666666666
Q ss_pred CCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCC
Q 036049 138 RLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQ 217 (517)
Q Consensus 138 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~ 217 (517)
+|++|++++|.+++.+|..|+.+++|++|++++|.+++.+|..+..+++|++|++++|++++ .+|..+.. ++
T Consensus 419 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~------~~p~~l~~--l~ 490 (768)
T 3rgz_A 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG------EIPSGLSN--CT 490 (768)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS------CCCGGGGG--CT
T ss_pred CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC------cCCHHHhc--CC
Confidence 66666666666665566666666666666666666665566666666666666666665552 44444444 55
Q ss_pred CCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCccccccccc--
Q 036049 218 NLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVL-- 295 (517)
Q Consensus 218 ~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~-- 295 (517)
+|++|++++|++++..+. .+..+++|++|++++|++++.+|. .+..+++|+.|+++++.......
T Consensus 491 ~L~~L~L~~N~l~~~~p~------------~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 491 NLNWISLSNNRLTGEIPK------------WIGRLENLAILKLSNNSFSGNIPA-ELGDCRSLIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp TCCEEECCSSCCCSCCCG------------GGGGCTTCCEEECCSSCCEEECCG-GGGGCTTCCEEECCSSEEESBCCGG
T ss_pred CCCEEEccCCccCCcCCh------------HHhcCCCCCEEECCCCcccCcCCH-HHcCCCCCCEEECCCCccCCcCChH
Confidence 555555555555544332 233444555555555555444442 24444444444444422110000
Q ss_pred -CC--------------------------------------------------------------Ccc-----cchhhhc
Q 036049 296 -SP--------------------------------------------------------------SGK-----LLMTTYD 307 (517)
Q Consensus 296 -~~--------------------------------------------------------------~~~-----~~~~~~~ 307 (517)
.. ..+ .......
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~L 637 (768)
T 3rgz_A 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637 (768)
T ss_dssp GGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEE
T ss_pred HhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEE
Confidence 00 000 0000011
Q ss_pred cceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCccc
Q 036049 308 YLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 387 (517)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 387 (517)
.+....+.+..+.....++.|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..+..+++|++|+|++|+++
T Consensus 638 dLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp ECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred ECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 11112222333333445678999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccccCCCCCEEeccCCcc
Q 036049 388 GRIPQQLVELTFLAFFNVSDNYL 410 (517)
Q Consensus 388 ~~~p~~l~~l~~L~~L~l~~N~l 410 (517)
|.+|.. ..+..+....+.+|+-
T Consensus 718 g~iP~~-~~~~~~~~~~~~gN~~ 739 (768)
T 3rgz_A 718 GPIPEM-GQFETFPPAKFLNNPG 739 (768)
T ss_dssp EECCSS-SSGGGSCGGGGCSCTE
T ss_pred ccCCCc-hhhccCCHHHhcCCch
Confidence 999964 2344455556777763
No 19
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.5e-34 Score=310.06 Aligned_cols=358 Identities=19% Similarity=0.174 Sum_probs=247.4
Q ss_pred CcEEEEEcCCCCceeeeCCCcccccCCC--CCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCC
Q 036049 61 GHVVKLNLSHSCLFGSINSSSSLYKLVH--LEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTR 138 (517)
Q Consensus 61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~--L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 138 (517)
.+++.|++++|.+++..+. .+..++. |++|++++|.+++. .+..+..+. +|++|++++|.+.+..|..|.++++
T Consensus 222 ~~L~~L~L~~n~l~~~~~~--~~~~l~~~~L~~L~Ls~n~l~~~-~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~ 297 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTSNT--TFLGLKWTNLTMLDLSYNNLNVV-GNDSFAWLP-QLEYFFLEYNNIQHLFSHSLHGLFN 297 (680)
T ss_dssp SCCCEEECTTSCCCEECTT--TTGGGGGSCCCEEECTTSCCCEE-CTTTTTTCT-TCCEEECCSCCBSEECTTTTTTCTT
T ss_pred ccccEEEccCCcccccChh--HhhccCcCCCCEEECCCCCcCcc-CcccccCcc-cccEeeCCCCccCccChhhhcCCCC
Confidence 4678888888888887776 7777754 99999999998763 334455555 9999999999998888888999999
Q ss_pred CcEEEccCCcccc-----cccc----cccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceecccccccc
Q 036049 139 LQFLYLGFNNFSG-----DLLG----SIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHK 209 (517)
Q Consensus 139 L~~L~Ls~n~i~~-----~~p~----~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 209 (517)
|++|++++|...+ .+|. .|..+++|++|++++|.+++..+..|.++++|++|++++|.+... .++.
T Consensus 298 L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~-----~l~~ 372 (680)
T 1ziw_A 298 VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR-----TLTN 372 (680)
T ss_dssp CCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCC-----EECT
T ss_pred ccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhh-----hcch
Confidence 9999998875543 2232 678889999999999999888888888999999999988875421 1221
Q ss_pred ccc-cccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcc
Q 036049 210 WLL-DPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASEL 288 (517)
Q Consensus 210 ~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~ 288 (517)
..+ ....++|+.|++++|++++..+. .+..+++|++|++++|.+.+.+|...+..+++|+.++++++
T Consensus 373 ~~f~~~~~~~L~~L~L~~n~l~~~~~~------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 373 ETFVSLAHSPLHILNLTKNKISKIESD------------AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440 (680)
T ss_dssp TTTGGGTTSCCCEEECTTSCCCEECTT------------TTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC
T ss_pred hhhcccccCcCceEECCCCCCCeEChh------------hhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCC
Confidence 111 10135677777777777765443 34556666777777776665566555666666666666654
Q ss_pred cccccccC---------------------CCcccchhhhccce-----eeeecCccccCCCchhhhhhhhCCCCCCcccC
Q 036049 289 RYLQDVLS---------------------PSGKLLMTTYDYLL-----TMNIKGRMMAYNKIPDILAGIILSNKSFDGAI 342 (517)
Q Consensus 289 ~~l~~~~~---------------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 342 (517)
........ ...+........+. ...+.+.........+.|+.|++++|.+++..
T Consensus 441 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~ 520 (680)
T 1ziw_A 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLW 520 (680)
T ss_dssp SEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGG
T ss_pred CcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccc
Confidence 32110000 00000001111111 12222333333444677888888888887532
Q ss_pred c--------ccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccC
Q 036049 343 P--------ASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLI 414 (517)
Q Consensus 343 p--------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 414 (517)
+ ..+..+++|+.|+|++|+++...+..|.++++|++|+|++|++++..+..|..+++|+.|++++|++++.+
T Consensus 521 ~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 521 KHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp STTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred hhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence 1 23677888888888888888444456888999999999999998666667788899999999999999877
Q ss_pred CCCC--cCCccCCCcccCCCCCCCCCC
Q 036049 415 PQGK--QFATFDNTSFDGNSGLCGKPL 439 (517)
Q Consensus 415 p~~~--~~~~l~~~~~~~Np~~c~~~~ 439 (517)
|... .+..+..+++.+|||.|+|+.
T Consensus 601 ~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 601 KKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp HHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred hhHhcccccccCEEEccCCCcccCCcc
Confidence 6542 467888999999999999874
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.9e-34 Score=313.02 Aligned_cols=353 Identities=14% Similarity=0.177 Sum_probs=275.0
Q ss_pred CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCC-CCCCCCchhhhhcc------cCCcEEEccCCCCcccCCc-
Q 036049 60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALND-FNSSEIQPEIINLS------CSLKLLDLRSCGFWGKVPH- 131 (517)
Q Consensus 60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~------~~L~~L~Ls~n~l~~~~p~- 131 (517)
..+++.|+|++|.+.+.+|. .+.++++|++|+|++|+ +++..+|..+..+. ++|++|+|++|.+. .+|.
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~--~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~ 566 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPD--FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPAS 566 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCG--GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCH
T ss_pred CCCCCEEECcCCCCCccChH--HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCCh
Confidence 35799999999999999887 99999999999999998 87512787776553 48999999999996 8898
Q ss_pred -cCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCc-ccccccccccCcceecccccccc
Q 036049 132 -SIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTE-LVVLDMAQNSYGGTMEIEGKVHK 209 (517)
Q Consensus 132 -~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~l~~N~l~~~~~~~~~~~~ 209 (517)
.|+++++|++|+|++|.++ .+| .|+.+++|++|+|++|.++ .+|..+.++++ |++|++++|.++ .+|.
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-------~lp~ 636 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-------YIPN 636 (876)
T ss_dssp HHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-------SCCS
T ss_pred hhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-------cCch
Confidence 8999999999999999999 788 8999999999999999999 88989999999 999999999987 6776
Q ss_pred ccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCccc
Q 036049 210 WLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELR 289 (517)
Q Consensus 210 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~ 289 (517)
.+.....++|+.|++++|.+++..+.. +.......+++|+.|++++|.++ .+|...+..+++|+.|+++++.
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l-------~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNI-------SCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNL 708 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSC-------SSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCC
T ss_pred hhhccccCCCCEEECcCCcCCCccccc-------hhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCc
Confidence 666522345999999999999865542 11111124568999999999998 8998888899999999998853
Q ss_pred ccccccCCCcccc--------hhhhccceeeeecCccccCC-CchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcC-
Q 036049 290 YLQDVLSPSGKLL--------MTTYDYLLTMNIKGRMMAYN-KIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHN- 359 (517)
Q Consensus 290 ~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~- 359 (517)
.- .......... ......+....+...+..+. ..++.|+.|+|++|.+++ +|..+..+++|+.|+|++
T Consensus 709 L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N 786 (876)
T 4ecn_A 709 MT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQ 786 (876)
T ss_dssp CS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCC
T ss_pred CC-ccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCC
Confidence 32 1111111100 11111222222232333332 246789999999999997 788999999999999976
Q ss_pred -----ccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCCCCC-cCCccCCCcccCCCC
Q 036049 360 -----NNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGK-QFATFDNTSFDGNSG 433 (517)
Q Consensus 360 -----N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~-~~~~l~~~~~~~Np~ 433 (517)
|++.+.+|..|..+++|+.|+|++|++ +.+|..+. ++|+.|+|++|++....+... .........+.+|+.
T Consensus 787 ~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred CCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence 788889999999999999999999999 58888765 699999999999987655321 122234456677776
Q ss_pred CC--CCC
Q 036049 434 LC--GKP 438 (517)
Q Consensus 434 ~c--~~~ 438 (517)
.+ +|+
T Consensus 864 ~~I~gC~ 870 (876)
T 4ecn_A 864 QDIRGCD 870 (876)
T ss_dssp SEEESCG
T ss_pred cccCCCC
Confidence 55 554
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.7e-34 Score=301.58 Aligned_cols=337 Identities=20% Similarity=0.193 Sum_probs=225.2
Q ss_pred CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCc
Q 036049 61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQ 140 (517)
Q Consensus 61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 140 (517)
.++++|+|++|.+++..+. .|.++++|++|+|++|.+++. .|..+..+. +|++|++++|.+. .+|.. .+++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~-~L~~L~Ls~N~l~-~lp~~--~l~~L~ 124 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMP--DISFLSELRVLRLSHNRIRSL-DFHVFLFNQ-DLEYLDVSHNRLQ-NISCC--PMASLR 124 (562)
T ss_dssp TTCCEEECCSSCCCCCCGG--GTTTCTTCCEEECCSCCCCEE-CTTTTTTCT-TCCEEECTTSCCC-EECSC--CCTTCS
T ss_pred CCcCEEECCCCCccccChh--hhccCCCccEEECCCCCCCcC-CHHHhCCCC-CCCEEECCCCcCC-ccCcc--ccccCC
Confidence 5678888888888766655 777888888888888887762 244455555 8888888888874 56654 678888
Q ss_pred EEEccCCcccc-cccccccCCccccEEEcccccccccCchhhhcCCcc--cccccccccC--cceecccccccccccc--
Q 036049 141 FLYLGFNNFSG-DLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTEL--VVLDMAQNSY--GGTMEIEGKVHKWLLD-- 213 (517)
Q Consensus 141 ~L~Ls~n~i~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~l~~N~l--~~~~~~~~~~~~~~~~-- 213 (517)
+|++++|.+++ ..|..|+++++|++|++++|.+++. .+..+++| ++|++++|.+ ++. .|..+..
T Consensus 125 ~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~------~~~~l~~l~ 195 (562)
T 3a79_B 125 HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGG------ETESLQIPN 195 (562)
T ss_dssp EEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSS------SCCEEEECC
T ss_pred EEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccccc------CcccccccC
Confidence 88888888875 2356788888888888888877642 34444444 7777777766 221 1111100
Q ss_pred -----------------------------------------------------------------------------ccC
Q 036049 214 -----------------------------------------------------------------------------PNM 216 (517)
Q Consensus 214 -----------------------------------------------------------------------------~~l 216 (517)
...
T Consensus 196 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~ 275 (562)
T 3a79_B 196 TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWP 275 (562)
T ss_dssp EEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTT
T ss_pred cceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhc
Confidence 001
Q ss_pred CCCCeEeccCCcccccCCCCCC---------------------CC-------------------CCCCCCCC-CCCCCcc
Q 036049 217 QNLNALNLSHNLLTGFDQHLVL---------------------LP-------------------GNNEEPRT-GCGFSKL 255 (517)
Q Consensus 217 ~~L~~L~Ls~n~l~~~~~~~~l---------------------l~-------------------~~~~~~~~-~~~l~~L 255 (517)
++|++|++++|.+++..+.... +| +....+.. ...+++|
T Consensus 276 ~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L 355 (562)
T 3a79_B 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSF 355 (562)
T ss_dssp SSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCC
T ss_pred ccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCc
Confidence 2566666666666643322110 00 00000000 1455666
Q ss_pred cEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCC
Q 036049 256 RIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSN 335 (517)
Q Consensus 256 ~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 335 (517)
++|++++|.+++.+| ..+..+++|+.|+++++..-... .........+.|+.|++++
T Consensus 356 ~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~----------------------~~~~~~~~l~~L~~L~l~~ 412 (562)
T 3a79_B 356 TFLNFTQNVFTDSVF-QGCSTLKRLQTLILQRNGLKNFF----------------------KVALMTKNMSSLETLDVSL 412 (562)
T ss_dssp CEEECCSSCCCTTTT-TTCCSCSSCCEEECCSSCCCBTT----------------------HHHHTTTTCTTCCEEECTT
T ss_pred eEEECCCCccccchh-hhhcccCCCCEEECCCCCcCCcc----------------------cchhhhcCCCCCCEEECCC
Confidence 777777776665444 33566666666666653211000 0011123367899999999
Q ss_pred CCCcccCcc-cccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccC
Q 036049 336 KSFDGAIPA-SISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLI 414 (517)
Q Consensus 336 n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 414 (517)
|.+++.+|. .+..+++|++|++++|++++.+|..+. ++|++|+|++|+++ .+|..+..+++|++|++++|++++.+
T Consensus 413 N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~ 489 (562)
T 3a79_B 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVP 489 (562)
T ss_dssp SCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCC
T ss_pred CcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCC
Confidence 999985554 588899999999999999887776654 79999999999999 78877779999999999999999665
Q ss_pred CC-CCcCCccCCCcccCCCCCCCCCC
Q 036049 415 PQ-GKQFATFDNTSFDGNSGLCGKPL 439 (517)
Q Consensus 415 p~-~~~~~~l~~~~~~~Np~~c~~~~ 439 (517)
+. ...+..+..+++++||+.|+|+.
T Consensus 490 ~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 490 DGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp TTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred HHHHhcCCCCCEEEecCCCcCCCcch
Confidence 55 45778888999999999998754
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.4e-34 Score=294.07 Aligned_cols=331 Identities=18% Similarity=0.132 Sum_probs=252.2
Q ss_pred CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCcc--CCCCC
Q 036049 60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHS--IGNFT 137 (517)
Q Consensus 60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~--~~~l~ 137 (517)
..+++.|+|++|.+.+.++. ..|.++++|++|+|++|.++.. .|..+..+. +|++|++++|.+.+..|.. |+.++
T Consensus 53 l~~L~~L~L~~n~~~~~i~~-~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~ 129 (455)
T 3v47_A 53 LQDLQFLKVEQQTPGLVIRN-NTFRGLSSLIILKLDYNQFLQL-ETGAFNGLA-NLEVLTLTQCNLDGAVLSGNFFKPLT 129 (455)
T ss_dssp CTTCCEEECCCCSTTCEECT-TTTTTCTTCCEEECTTCTTCEE-CTTTTTTCT-TCCEEECTTSCCBTHHHHSSTTTTCT
T ss_pred CccccEEECcCCcccceECc-ccccccccCCEEeCCCCccCcc-ChhhccCcc-cCCEEeCCCCCCCccccCcccccCcc
Confidence 46899999999999755542 2799999999999999999874 466677777 9999999999997755554 99999
Q ss_pred CCcEEEccCCccccccccc-ccCCccccEEEcccccccccCchhhhcC--CcccccccccccCcceeccc--cccccccc
Q 036049 138 RLQFLYLGFNNFSGDLLGS-IGNLRSLEAIYMSKCNFSGQITSSLRNL--TELVVLDMAQNSYGGTMEIE--GKVHKWLL 212 (517)
Q Consensus 138 ~L~~L~Ls~n~i~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~l~~N~l~~~~~~~--~~~~~~~~ 212 (517)
+|++|++++|.+++..|.. |.++++|++|++++|.+++..+..+..+ .+|+.|++++|.+.+..... ......+.
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~ 209 (455)
T 3v47_A 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209 (455)
T ss_dssp TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTT
T ss_pred cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccc
Confidence 9999999999999887876 8999999999999999998888888776 67777888877776321100 00001122
Q ss_pred cccCCCCCeEeccCCcccccCCCC---------------------------CCCCCCCCCCCCCCCCCcccEEEccCCcC
Q 036049 213 DPNMQNLNALNLSHNLLTGFDQHL---------------------------VLLPGNNEEPRTGCGFSKLRIIDLSDNRF 265 (517)
Q Consensus 213 ~~~l~~L~~L~Ls~n~l~~~~~~~---------------------------~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l 265 (517)
. +++|++|++++|.+++..+.. .-+++...........++|++|++++|.+
T Consensus 210 ~--~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 287 (455)
T 3v47_A 210 K--NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI 287 (455)
T ss_dssp T--TCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCC
T ss_pred c--cceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccc
Confidence 2 566777777777665422110 00000001111111346899999999999
Q ss_pred CCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCccc
Q 036049 266 TGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPAS 345 (517)
Q Consensus 266 ~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 345 (517)
++..| ..+..+++|+.|+++++.... .........+.|+.|++++|.+++..|..
T Consensus 288 ~~~~~-~~~~~l~~L~~L~Ls~n~l~~------------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 342 (455)
T 3v47_A 288 FALLK-SVFSHFTDLEQLTLAQNEINK------------------------IDDNAFWGLTHLLKLNLSQNFLGSIDSRM 342 (455)
T ss_dssp CEECT-TTTTTCTTCCEEECTTSCCCE------------------------ECTTTTTTCTTCCEEECCSSCCCEECGGG
T ss_pred cccch-hhcccCCCCCEEECCCCcccc------------------------cChhHhcCcccCCEEECCCCccCCcChhH
Confidence 85444 568889999999988743221 11112223678999999999999888999
Q ss_pred ccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCCCCCcC
Q 036049 346 ISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQF 420 (517)
Q Consensus 346 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~ 420 (517)
+..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|++|++++|++++.+|....+
T Consensus 343 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l 417 (455)
T 3v47_A 343 FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 417 (455)
T ss_dssp GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred hcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence 999999999999999999888999999999999999999999777777899999999999999999999865433
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.8e-34 Score=301.26 Aligned_cols=112 Identities=28% Similarity=0.320 Sum_probs=93.5
Q ss_pred hhhhhhhhCCCCCCcccCcc-cccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEE
Q 036049 325 PDILAGIILSNKSFDGAIPA-SISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFF 403 (517)
Q Consensus 325 ~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 403 (517)
++.|+.|++++|.+++.+|. .+..+++|+.|++++|++++..|..+. ++|++|+|++|+++ .+|..+..+++|++|
T Consensus 373 l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L 449 (520)
T 2z7x_B 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQEL 449 (520)
T ss_dssp CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEE
Confidence 56788889999998875665 377788999999999998877776654 78999999999998 788888899999999
Q ss_pred eccCCcccccCCC-CCcCCccCCCcccCCCCCCCCCC
Q 036049 404 NVSDNYLTGLIPQ-GKQFATFDNTSFDGNSGLCGKPL 439 (517)
Q Consensus 404 ~l~~N~l~~~~p~-~~~~~~l~~~~~~~Np~~c~~~~ 439 (517)
++++|++++.++. ...+..+..+++++||+.|+|+.
T Consensus 450 ~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 450 NVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred ECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 9999999965554 35677888999999999998753
No 24
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.4e-33 Score=298.55 Aligned_cols=134 Identities=19% Similarity=0.147 Sum_probs=82.4
Q ss_pred CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCc
Q 036049 61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQ 140 (517)
Q Consensus 61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 140 (517)
.++++|+|++|.+++..+. .|.++++|++|+|++|.+++. .|..+..+. +|++|++++|.+.+..+..|+++++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAA--NFTRYSQLTSLDVGFNTISKL-EPELCQKLP-MLKVLNLQHNELSQLSDKTFAFCTNLT 100 (680)
T ss_dssp TTCSEEECCSSCCCCCCGG--GGGGGTTCSEEECCSSCCCCC-CTTHHHHCT-TCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred CCCcEEECCCCCCCCcCHH--HHhCCCcCcEEECCCCccCcc-CHHHHhccc-CcCEEECCCCccCccChhhhccCCCCC
Confidence 4667777777777655544 566667777777777666653 344444444 666666666666443334566666666
Q ss_pred EEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCc
Q 036049 141 FLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYG 198 (517)
Q Consensus 141 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~ 198 (517)
+|++++|.+++..|..|+++++|++|++++|.+++..|..+.++++|++|++++|.++
T Consensus 101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred EEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc
Confidence 6666666666555556666666666666666666555555555666666666555544
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.1e-33 Score=298.83 Aligned_cols=350 Identities=21% Similarity=0.144 Sum_probs=250.8
Q ss_pred CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCC
Q 036049 60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRL 139 (517)
Q Consensus 60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 139 (517)
..++++|+|++|.+++..+. +|.++++|++|+|++|.++.. .|..+..+. +|++|++++|.+.+..+..|+++++|
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~--~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L 130 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDK--AWHGLHHLSNLILTGNPIQSF-SPGSFSGLT-SLENLVAVETKLASLESFPIGQLITL 130 (606)
T ss_dssp CTTCCEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCCCCC-CTTSSTTCT-TCCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred CccCcEEeCCCCcccccCHH--HhhchhhcCEeECCCCccccc-ChhhcCCcc-cCCEEEccCCccccccccccCCCCCC
Confidence 46899999999999887777 889999999999999999873 466676776 99999999999977777889999999
Q ss_pred cEEEccCCcccc-cccccccCCccccEEEcccccccccCchhhhcCCc---------------------------ccccc
Q 036049 140 QFLYLGFNNFSG-DLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTE---------------------------LVVLD 191 (517)
Q Consensus 140 ~~L~Ls~n~i~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~---------------------------L~~L~ 191 (517)
++|++++|.+++ .+|..|+++++|++|++++|.+++..+..|..+++ |++|+
T Consensus 131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~ 210 (606)
T 3vq2_A 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELT 210 (606)
T ss_dssp CEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred CEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeee
Confidence 999999999986 56888999999999999999888766655544333 33333
Q ss_pred cccccCccee----------------------------------------------------ccc---------------
Q 036049 192 MAQNSYGGTM----------------------------------------------------EIE--------------- 204 (517)
Q Consensus 192 l~~N~l~~~~----------------------------------------------------~~~--------------- 204 (517)
+++|.+.+.. .+.
T Consensus 211 L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L 290 (606)
T 3vq2_A 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM 290 (606)
T ss_dssp EESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEE
T ss_pred ccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEE
Confidence 3333321000 000
Q ss_pred -----------------------------cccc--------------------cccccccCCCCCeEeccCCcccccC--
Q 036049 205 -----------------------------GKVH--------------------KWLLDPNMQNLNALNLSHNLLTGFD-- 233 (517)
Q Consensus 205 -----------------------------~~~~--------------------~~~~~~~l~~L~~L~Ls~n~l~~~~-- 233 (517)
+.+| ..+. .+++|++|++++|.+++..
T Consensus 291 ~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~--~l~~L~~L~ls~n~l~~~~~~ 368 (606)
T 3vq2_A 291 SLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKV--ALPSLSYLDLSRNALSFSGCC 368 (606)
T ss_dssp EEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCC--CCTTCCEEECCSSCEEEEEEC
T ss_pred EecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhc--cCCCCCEEECcCCccCCCcch
Confidence 0111 0112 2678888888888887652
Q ss_pred CCC-----CC----CCCC--CCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccc
Q 036049 234 QHL-----VL----LPGN--NEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLL 302 (517)
Q Consensus 234 ~~~-----~l----l~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 302 (517)
+.. .+ +.++ ...+..+..+++|++|++++|++.+..|...+..+++|+.|+++++..............
T Consensus 369 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 448 (606)
T 3vq2_A 369 SYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448 (606)
T ss_dssp CHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred hhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC
Confidence 110 00 1111 011234577888999999999888666656688888899988887553321111111111
Q ss_pred hhhhccceeeeecC-ccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeC
Q 036049 303 MTTYDYLLTMNIKG-RMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDL 381 (517)
Q Consensus 303 ~~~~~~~~~~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 381 (517)
......+....+.+ ........++.|+.|++++|.+++..|..+..+++|++|+|++|++++..|..|..+++|++|+|
T Consensus 449 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 528 (606)
T 3vq2_A 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528 (606)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence 11111222222222 12333455789999999999999999999999999999999999999888999999999999999
Q ss_pred CCCcccccCccccccCC-CCCEEeccCCcccccCCC
Q 036049 382 SNNKFSGRIPQQLVELT-FLAFFNVSDNYLTGLIPQ 416 (517)
Q Consensus 382 s~N~l~~~~p~~l~~l~-~L~~L~l~~N~l~~~~p~ 416 (517)
++|+++ .+|..+..++ +|++|++++|++.+..+.
T Consensus 529 ~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 529 SFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 999999 6777799987 599999999999987764
No 26
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=3.7e-34 Score=280.22 Aligned_cols=282 Identities=18% Similarity=0.218 Sum_probs=168.1
Q ss_pred CchHhHHHHHHHhhcCCCCCCcccccCCCCCCCCCCC-CCCCCCCcccceeecCC--------CCCcEEEEEcCCCCcee
Q 036049 5 CHDDERSALLQFKESRISGDFYAWKFDCRPTMASWKP-EEGNVDCCSWDGVHCNK--------NTGHVVKLNLSHSCLFG 75 (517)
Q Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~-~~~~~~~C~w~gv~c~~--------~~~~l~~L~Ls~n~l~~ 75 (517)
+..+|+.||++||+++..+. . ..++.|.. .....++|.|.|+.|.. ...+|+.|+|++|.++
T Consensus 24 ~~~~~~~aLl~~k~~~~~~~-~-------~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~- 94 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNADR-N-------RWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP- 94 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHCC-T-------THHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-
T ss_pred cCchHHHHHHHHHHhccCCc-h-------hhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-
Confidence 55689999999999875333 1 24577831 00157899999999942 2245555555555554
Q ss_pred eeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccc
Q 036049 76 SINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLG 155 (517)
Q Consensus 76 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~ 155 (517)
.+|. .+.++++|++|+|++|.++. +|..+..+. +|++|+|++|.+. .+|..|+++++|++|++++|++.+.+|.
T Consensus 95 ~lp~--~l~~l~~L~~L~L~~n~l~~--lp~~~~~l~-~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~ 168 (328)
T 4fcg_A 95 QFPD--QAFRLSHLQHMTIDAAGLME--LPDTMQQFA-GLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPE 168 (328)
T ss_dssp SCCS--CGGGGTTCSEEEEESSCCCC--CCSCGGGGT-TCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCS
T ss_pred hcCh--hhhhCCCCCEEECCCCCccc--hhHHHhccC-CCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccCh
Confidence 3333 44455555555555555542 454444444 5555555555553 4455555555555555555544444444
Q ss_pred cccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCC
Q 036049 156 SIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQH 235 (517)
Q Consensus 156 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 235 (517)
.+... ..+..|.++++|++|++++|.++ .+|..+.. +++|++|++++|.++++++.
T Consensus 169 ~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-------~lp~~l~~--l~~L~~L~L~~N~l~~l~~~ 224 (328)
T 4fcg_A 169 PLAST---------------DASGEHQGLVNLQSLRLEWTGIR-------SLPASIAN--LQNLKSLKIRNSPLSALGPA 224 (328)
T ss_dssp CSEEE---------------C-CCCEEESTTCCEEEEEEECCC-------CCCGGGGG--CTTCCEEEEESSCCCCCCGG
T ss_pred hHhhc---------------cchhhhccCCCCCEEECcCCCcC-------cchHhhcC--CCCCCEEEccCCCCCcCchh
Confidence 43320 00011223666666666666665 45555555 66777777777776654332
Q ss_pred CCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeec
Q 036049 236 LVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIK 315 (517)
Q Consensus 236 ~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 315 (517)
+..+++|++|++++|.+.+.+|
T Consensus 225 -------------l~~l~~L~~L~Ls~n~~~~~~p--------------------------------------------- 246 (328)
T 4fcg_A 225 -------------IHHLPKLEELDLRGCTALRNYP--------------------------------------------- 246 (328)
T ss_dssp -------------GGGCTTCCEEECTTCTTCCBCC---------------------------------------------
T ss_pred -------------hccCCCCCEEECcCCcchhhhH---------------------------------------------
Confidence 3566777777777777664433
Q ss_pred CccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccc
Q 036049 316 GRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLV 395 (517)
Q Consensus 316 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 395 (517)
..+..+++|+.|+|++|.+.+.+|..+..+++|++|+|++|.+.+.+|..+.
T Consensus 247 ----------------------------~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 247 ----------------------------PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp ----------------------------CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred ----------------------------HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 2345566677777777766667777777777777777777777777777777
Q ss_pred cCCCCCEEeccCCccc
Q 036049 396 ELTFLAFFNVSDNYLT 411 (517)
Q Consensus 396 ~l~~L~~L~l~~N~l~ 411 (517)
.+++|+.+++..|.+.
T Consensus 299 ~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 299 QLPANCIILVPPHLQA 314 (328)
T ss_dssp GSCTTCEEECCGGGSC
T ss_pred hccCceEEeCCHHHHH
Confidence 7777777777666554
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.5e-32 Score=273.35 Aligned_cols=309 Identities=18% Similarity=0.151 Sum_probs=253.0
Q ss_pred CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchh-hhhcccCCcEEEccCCCCcccCCccCCCCCCC
Q 036049 61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPE-IINLSCSLKLLDLRSCGFWGKVPHSIGNFTRL 139 (517)
Q Consensus 61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 139 (517)
.++++|+|++|.+++..+. .|..+++|++|++++|.++. +++. +..+. +|++|++++|.+....+..|.++++|
T Consensus 69 ~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L 143 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTY--AFAYAHTIQKLYMGFNAIRY--LPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKL 143 (390)
T ss_dssp CCCSEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCC--CCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCcEEECCCCcccccChh--hccCCCCcCEEECCCCCCCc--CCHHHhcCCC-CCCEEECCCCccCcCCHHHhcCCCCC
Confidence 5799999999999987776 89999999999999999987 5544 55666 99999999999965444557999999
Q ss_pred cEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCC
Q 036049 140 QFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNL 219 (517)
Q Consensus 140 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L 219 (517)
++|++++|.+++..+..|..+++|++|++++|.+++. .+..+++|++|++++|.+++ ++. .++|
T Consensus 144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-------~~~------~~~L 207 (390)
T 3o6n_A 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-------LAI------PIAV 207 (390)
T ss_dssp CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-------EEC------CSSC
T ss_pred cEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-------cCC------CCcc
Confidence 9999999999988888899999999999999999854 36678999999999998873 221 5789
Q ss_pred CeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCc
Q 036049 220 NALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSG 299 (517)
Q Consensus 220 ~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 299 (517)
++|++++|.++..+.. .+++|+.|++++|.+++ . ..+..+++|+.|+++++....
T Consensus 208 ~~L~l~~n~l~~~~~~---------------~~~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L~Ls~n~l~~------- 262 (390)
T 3o6n_A 208 EELDASHNSINVVRGP---------------VNVELTILKLQHNNLTD-T--AWLLNYPGLVEVDLSYNELEK------- 262 (390)
T ss_dssp SEEECCSSCCCEEECC---------------CCSSCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSSCCCE-------
T ss_pred eEEECCCCeeeecccc---------------ccccccEEECCCCCCcc-c--HHHcCCCCccEEECCCCcCCC-------
Confidence 9999999999887432 35789999999999984 3 357888999999998843221
Q ss_pred ccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCee
Q 036049 300 KLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESL 379 (517)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 379 (517)
........++.|+.|++++|.+++ +|..+..+++|++|+|++|+++ .+|..+..+++|++|
T Consensus 263 -----------------~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L 323 (390)
T 3o6n_A 263 -----------------IMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 323 (390)
T ss_dssp -----------------EESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred -----------------cChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEE
Confidence 011112236789999999999985 5667788999999999999998 677778899999999
Q ss_pred eCCCCcccccCccccccCCCCCEEeccCCcccccCCCCCcCCccCCCcccCCCCCCCCC
Q 036049 380 DLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKP 438 (517)
Q Consensus 380 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~Np~~c~~~ 438 (517)
+|++|+++.. + +..+++|+.|++++|++++.... ..+..+....+.+++..|.++
T Consensus 324 ~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 324 YLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp ECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCTT
T ss_pred ECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceeccc
Confidence 9999999854 3 67889999999999999875332 345666677788888888754
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.1e-32 Score=267.19 Aligned_cols=303 Identities=21% Similarity=0.278 Sum_probs=249.5
Q ss_pred CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCC
Q 036049 60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRL 139 (517)
Q Consensus 60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 139 (517)
..++++|+++++.+... + .+..+++|++|++++|.++. +++ +..+. +|++|++++|.+.. ++ .|..+++|
T Consensus 43 l~~L~~L~l~~~~i~~~-~---~~~~~~~L~~L~l~~n~i~~--~~~-~~~l~-~L~~L~L~~n~i~~-~~-~~~~l~~L 112 (347)
T 4fmz_A 43 LESITKLVVAGEKVASI-Q---GIEYLTNLEYLNLNGNQITD--ISP-LSNLV-KLTNLYIGTNKITD-IS-ALQNLTNL 112 (347)
T ss_dssp HTTCSEEECCSSCCCCC-T---TGGGCTTCCEEECCSSCCCC--CGG-GTTCT-TCCEEECCSSCCCC-CG-GGTTCTTC
T ss_pred cccccEEEEeCCccccc-h---hhhhcCCccEEEccCCcccc--chh-hhcCC-cCCEEEccCCcccC-ch-HHcCCCcC
Confidence 35799999999998743 2 58889999999999999987 665 66666 99999999999954 44 69999999
Q ss_pred cEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCC
Q 036049 140 QFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNL 219 (517)
Q Consensus 140 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L 219 (517)
++|++++|.+++. +. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+ ++. +.. +++|
T Consensus 113 ~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~-------~~~-~~~--l~~L 179 (347)
T 4fmz_A 113 RELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD-------VTP-IAN--LTDL 179 (347)
T ss_dssp SEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC-------CGG-GGG--CTTC
T ss_pred CEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC-------chh-hcc--CCCC
Confidence 9999999999954 43 8999999999999997664444 48999999999999999873 332 444 8999
Q ss_pred CeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCc
Q 036049 220 NALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSG 299 (517)
Q Consensus 220 ~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 299 (517)
++|++++|.+++..+ +..+++|+.|++++|.+.+ ++. +..+++|+.|+++++.....
T Consensus 180 ~~L~l~~n~l~~~~~--------------~~~l~~L~~L~l~~n~l~~-~~~--~~~~~~L~~L~l~~n~l~~~------ 236 (347)
T 4fmz_A 180 YSLSLNYNQIEDISP--------------LASLTSLHYFTAYVNQITD-ITP--VANMTRLNSLKIGNNKITDL------ 236 (347)
T ss_dssp SEEECTTSCCCCCGG--------------GGGCTTCCEEECCSSCCCC-CGG--GGGCTTCCEEECCSSCCCCC------
T ss_pred CEEEccCCccccccc--------------ccCCCccceeecccCCCCC-Cch--hhcCCcCCEEEccCCccCCC------
Confidence 999999999987643 3678999999999999984 443 77888999999887432210
Q ss_pred ccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCee
Q 036049 300 KLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESL 379 (517)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 379 (517)
.. ....+.|+.|++++|.+++. ..+..+++|+.|++++|++++ + ..+..+++|++|
T Consensus 237 ------------------~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L 292 (347)
T 4fmz_A 237 ------------------SP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSL 292 (347)
T ss_dssp ------------------GG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEE
T ss_pred ------------------cc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEE
Confidence 00 22367899999999999863 468899999999999999985 3 458899999999
Q ss_pred eCCCCcccccCccccccCCCCCEEeccCCcccccCCCCCcCCccCCCcccCCCC
Q 036049 380 DLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSG 433 (517)
Q Consensus 380 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~Np~ 433 (517)
++++|++++..|..+..+++|++|++++|++++.+| ...++.++.+++++|+.
T Consensus 293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp ECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred ECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence 999999998888999999999999999999998877 66788899999999874
No 29
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=290.71 Aligned_cols=342 Identities=20% Similarity=0.202 Sum_probs=222.9
Q ss_pred CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCc-hhhhhcccCCcEEEccCCCCcccCCccCCCCCCC
Q 036049 61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQ-PEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRL 139 (517)
Q Consensus 61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 139 (517)
.++++|+|++|.+++..+. .|.++++|++|+|++|.++. ++ ..+..+. +|++|++++|.+.+..+..|+++++|
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~--~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L 126 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDG--AYQSLSHLSTLILTGNPIQS--LALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTL 126 (570)
T ss_dssp SSCCEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCCCE--ECTTTTTTCT-TCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred CCceEEECCCCcCCccCcc--cccCchhCCEEeCcCCcCCc--cCHhhhcCcc-ccccccccccccccCCCccccccccc
Confidence 5677777777777766555 67777777777777777765 33 3344444 77777777777755444456777777
Q ss_pred cEEEccCCcccc-cccccccCCccccEEEcccccccccCchhhh------------------------------------
Q 036049 140 QFLYLGFNNFSG-DLLGSIGNLRSLEAIYMSKCNFSGQITSSLR------------------------------------ 182 (517)
Q Consensus 140 ~~L~Ls~n~i~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~------------------------------------ 182 (517)
++|++++|.+++ .+|..|+++++|++|++++|.+++..+..+.
T Consensus 127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~ 206 (570)
T 2z63_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206 (570)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred cEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEe
Confidence 777777777765 3566677777777777777666544333322
Q ss_pred -------------------------------------------------------------------------cCCcccc
Q 036049 183 -------------------------------------------------------------------------NLTELVV 189 (517)
Q Consensus 183 -------------------------------------------------------------------------~l~~L~~ 189 (517)
.+++|++
T Consensus 207 l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~ 286 (570)
T 2z63_A 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286 (570)
T ss_dssp EESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSE
T ss_pred cccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccE
Confidence 2344444
Q ss_pred cccccccCcceeccc---------------ccccccc------------------ccccCCCCCeEeccCCcccccCCCC
Q 036049 190 LDMAQNSYGGTMEIE---------------GKVHKWL------------------LDPNMQNLNALNLSHNLLTGFDQHL 236 (517)
Q Consensus 190 L~l~~N~l~~~~~~~---------------~~~~~~~------------------~~~~l~~L~~L~Ls~n~l~~~~~~~ 236 (517)
|++++|.+.+..... ..+|... ....+++|++|++++|.+++....
T Consensus 287 L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~- 365 (570)
T 2z63_A 287 FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC- 365 (570)
T ss_dssp EEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEE-
T ss_pred EEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccc-
Confidence 444444443211000 0111100 002378999999999998865310
Q ss_pred CCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCC-Ccccchhhhccceeeeec
Q 036049 237 VLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSP-SGKLLMTTYDYLLTMNIK 315 (517)
Q Consensus 237 ~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~ 315 (517)
+..+..+++|++|++++|.+. .+|.. +..+++|+.|+++++......... ...........+....+.
T Consensus 366 ---------~~~~~~~~~L~~L~l~~n~l~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 434 (570)
T 2z63_A 366 ---------SQSDFGTTSLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434 (570)
T ss_dssp ---------EHHHHTCSCCCEEECCSCSEE-EEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCE
T ss_pred ---------cccccccCccCEEECCCCccc-ccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccc
Confidence 012356677778888777776 34444 667777777777764332211100 000000011111111122
Q ss_pred CccccCCCchhhhhhhhCCCCCCc-ccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCcccc
Q 036049 316 GRMMAYNKIPDILAGIILSNKSFD-GAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQL 394 (517)
Q Consensus 316 ~~~~~~~~~~~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 394 (517)
+........++.|+.|++++|.+. +.+|..+..+++|+.|+|++|++++..|..|..+++|++|+|++|++++..|..+
T Consensus 435 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 514 (570)
T 2z63_A 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514 (570)
T ss_dssp ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh
Confidence 222333444788999999999998 5789999999999999999999998889999999999999999999998888889
Q ss_pred ccCCCCCEEeccCCcccccCCCCCc
Q 036049 395 VELTFLAFFNVSDNYLTGLIPQGKQ 419 (517)
Q Consensus 395 ~~l~~L~~L~l~~N~l~~~~p~~~~ 419 (517)
..+++|+.|++++|++++.+|....
T Consensus 515 ~~l~~L~~L~l~~N~~~~~~~~~~~ 539 (570)
T 2z63_A 515 DRLTSLQKIWLHTNPWDCSCPRIDY 539 (570)
T ss_dssp TTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred hcccCCcEEEecCCcccCCCcchHH
Confidence 9999999999999999999987543
No 30
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=286.49 Aligned_cols=111 Identities=21% Similarity=0.169 Sum_probs=82.2
Q ss_pred CchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccc--cCChhccCCCCCCeeeCCCCcccccCcc-ccccCCC
Q 036049 323 KIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQG--HIPSCLGNLTNLESLDLSNNKFSGRIPQ-QLVELTF 399 (517)
Q Consensus 323 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~ 399 (517)
..++.|++|++++|.+++..|..+..+++|+.|+|++|++++ .+|..+..+++|++|+|++|++++.+|. .+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 346678888888888888778888888888888888888875 4556788888888888888888864554 3677778
Q ss_pred CCEEeccCCcccccCCCCCcCCccCCCcccCCCCC
Q 036049 400 LAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGL 434 (517)
Q Consensus 400 L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~Np~~ 434 (517)
|++|++++|++++..|.... ..++.+++++|...
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~-~~L~~L~Ls~N~l~ 434 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP-PRIKVLDLHSNKIK 434 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC-TTCCEEECCSSCCC
T ss_pred CCEEECcCCCCCcchhhhhc-ccCCEEECCCCccc
Confidence 88888888887766664322 46666666666544
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=1.1e-31 Score=284.32 Aligned_cols=309 Identities=18% Similarity=0.154 Sum_probs=256.2
Q ss_pred CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhh-hhcccCCcEEEccCCCCcccCCccCCCCCCC
Q 036049 61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEI-INLSCSLKLLDLRSCGFWGKVPHSIGNFTRL 139 (517)
Q Consensus 61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 139 (517)
.+++.|+|++|.+++..+. .|..+++|++|+|++|.+++ +++.. ..+. +|++|+|++|.+.+..+..|+++++|
T Consensus 75 ~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L 149 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTY--AFAYAHTIQKLYMGFNAIRY--LPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKL 149 (597)
T ss_dssp CCCSEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCC--CCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCcEEECCCCCCCCCChH--HhcCCCCCCEEECCCCcCCC--CCHHHHcCCC-CCCEEEeeCCCCCCCCHHHhccCCCC
Confidence 5799999999999988777 89999999999999999988 55554 5565 99999999999976656667999999
Q ss_pred cEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCC
Q 036049 140 QFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNL 219 (517)
Q Consensus 140 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L 219 (517)
++|+|++|.+++..|..|+.+++|++|++++|.+++. .+..+++|+.|++++|.+++ ++. .++|
T Consensus 150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-------l~~------~~~L 213 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-------LAI------PIAV 213 (597)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE-------EEC------CTTC
T ss_pred CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc-------ccC------Cchh
Confidence 9999999999998888999999999999999999864 25678999999999998873 221 6789
Q ss_pred CeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCc
Q 036049 220 NALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSG 299 (517)
Q Consensus 220 ~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 299 (517)
++|++++|.++.++.. ..++|+.|++++|.+++. ..+..+++|+.|+++++....
T Consensus 214 ~~L~ls~n~l~~~~~~---------------~~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~------- 268 (597)
T 3oja_B 214 EELDASHNSINVVRGP---------------VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEK------- 268 (597)
T ss_dssp SEEECCSSCCCEEECS---------------CCSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCE-------
T ss_pred heeeccCCcccccccc---------------cCCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCC-------
Confidence 9999999999887543 236899999999999853 457889999999998743221
Q ss_pred ccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCee
Q 036049 300 KLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESL 379 (517)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 379 (517)
..+.....++.|+.|++++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|
T Consensus 269 -----------------~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L 329 (597)
T 3oja_B 269 -----------------IMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 329 (597)
T ss_dssp -----------------EESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred -----------------CCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEE
Confidence 111122236789999999999996 5777788999999999999999 688888999999999
Q ss_pred eCCCCcccccCccccccCCCCCEEeccCCcccccCCCCCcCCccCCCcccCCCCCCCCC
Q 036049 380 DLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKP 438 (517)
Q Consensus 380 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~Np~~c~~~ 438 (517)
+|++|.+++. + +..+++|+.|++++|++++..+. ..+..+....+.+++..|+.+
T Consensus 330 ~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 330 YLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp ECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred ECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence 9999999854 3 67789999999999999976432 345666677788999999764
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.98 E-value=1.4e-31 Score=282.00 Aligned_cols=329 Identities=20% Similarity=0.255 Sum_probs=245.0
Q ss_pred CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcc-cCCccCCCCCC
Q 036049 60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWG-KVPHSIGNFTR 138 (517)
Q Consensus 60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~p~~~~~l~~ 138 (517)
..++++|+|++|.+++..+. .|.++++|++|+|++|.++. +|.. .+. +|++|++++|.+.+ .+|..|+++++
T Consensus 75 l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~--lp~~--~l~-~L~~L~Ls~N~l~~l~~p~~~~~l~~ 147 (562)
T 3a79_B 75 LSELRVLRLSHNRIRSLDFH--VFLFNQDLEYLDVSHNRLQN--ISCC--PMA-SLRHLDLSFNDFDVLPVCKEFGNLTK 147 (562)
T ss_dssp CTTCCEEECCSCCCCEECTT--TTTTCTTCCEEECTTSCCCE--ECSC--CCT-TCSEEECCSSCCSBCCCCGGGGGCTT
T ss_pred CCCccEEECCCCCCCcCCHH--HhCCCCCCCEEECCCCcCCc--cCcc--ccc-cCCEEECCCCCccccCchHhhcccCc
Confidence 46899999999999988777 89999999999999999986 7766 555 99999999999976 34689999999
Q ss_pred CcEEEccCCcccccccccccCCccc--cEEEcccccc--cccCchhhhcCC-----------------------------
Q 036049 139 LQFLYLGFNNFSGDLLGSIGNLRSL--EAIYMSKCNF--SGQITSSLRNLT----------------------------- 185 (517)
Q Consensus 139 L~~L~Ls~n~i~~~~p~~~~~l~~L--~~L~L~~n~l--~~~~p~~l~~l~----------------------------- 185 (517)
|++|++++|.+++. .+..+++| ++|++++|.+ ++..|..+..+.
T Consensus 148 L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~ 224 (562)
T 3a79_B 148 LTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224 (562)
T ss_dssp CCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEE
T ss_pred ccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEE
Confidence 99999999999853 34555555 9999999988 656555554432
Q ss_pred ----------------------------------------------------cccccccccccCcceecccccccccccc
Q 036049 186 ----------------------------------------------------ELVVLDMAQNSYGGTMEIEGKVHKWLLD 213 (517)
Q Consensus 186 ----------------------------------------------------~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 213 (517)
+|++|++++|.+++ .+|..++.
T Consensus 225 ~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~------~ip~~~~~ 298 (562)
T 3a79_B 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE------RIDREEFT 298 (562)
T ss_dssp EEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECS------CCCCCCCC
T ss_pred EecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeec------cccchhhh
Confidence 45555555555442 33433210
Q ss_pred ---------------------------------------------------ccCCCCCeEeccCCcccccCCCCCCCCCC
Q 036049 214 ---------------------------------------------------PNMQNLNALNLSHNLLTGFDQHLVLLPGN 242 (517)
Q Consensus 214 ---------------------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~ 242 (517)
..+++|++|++++|.+++..+.
T Consensus 299 ~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------- 371 (562)
T 3a79_B 299 YSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQ------- 371 (562)
T ss_dssp CCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTT-------
T ss_pred cccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhh-------
Confidence 1267788888888887764332
Q ss_pred CCCCCCCCCCCcccEEEccCCcCCCCCCh--hhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCcccc
Q 036049 243 NEEPRTGCGFSKLRIIDLSDNRFTGKLPS--KSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMA 320 (517)
Q Consensus 243 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (517)
.+..+++|++|++++|+++ .++. ..+..+++|+.|+++++..... ....
T Consensus 372 -----~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~l~~L~~L~l~~N~l~~~-----------------------~~~~ 422 (562)
T 3a79_B 372 -----GCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSH-----------------------AYDR 422 (562)
T ss_dssp -----TCCSCSSCCEEECCSSCCC-BTTHHHHTTTTCTTCCEEECTTSCCBSC-----------------------CSSC
T ss_pred -----hhcccCCCCEEECCCCCcC-CcccchhhhcCCCCCCEEECCCCcCCCc-----------------------cChh
Confidence 4578999999999999998 4553 4578899999999988443210 1111
Q ss_pred CCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccc-cccCCC
Q 036049 321 YNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQ-LVELTF 399 (517)
Q Consensus 321 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~ 399 (517)
....++.|+.|++++|.+++..|..+. ++|+.|+|++|+++ .+|..+..+++|++|+|++|+++ .+|.. +..+++
T Consensus 423 ~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~ 498 (562)
T 3a79_B 423 TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTS 498 (562)
T ss_dssp CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTT
T ss_pred hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCC
Confidence 223367899999999999987776654 79999999999999 78887779999999999999999 56655 999999
Q ss_pred CCEEeccCCcccccCCCCCcCCcc---CCCcccCCCCCCCCCCCCCCCC
Q 036049 400 LAFFNVSDNYLTGLIPQGKQFATF---DNTSFDGNSGLCGKPLSKGCES 445 (517)
Q Consensus 400 L~~L~l~~N~l~~~~p~~~~~~~l---~~~~~~~Np~~c~~~~~~~c~~ 445 (517)
|+.|++++|++++..|....+..+ ....+. +...|+.+....|..
T Consensus 499 L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~C~~ 546 (562)
T 3a79_B 499 LQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVR-NSAGSVAPDSAKCSG 546 (562)
T ss_dssp CCCEECCSCCBCCCHHHHHHHHHHHHHTTTTEE-CSSSSBCSSSSCBSS
T ss_pred CCEEEecCCCcCCCcchHHHHHHHHHhcCCccc-ccccCCCCCCCccCC
Confidence 999999999999877643221111 111222 223345666667766
No 33
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=7.3e-31 Score=257.76 Aligned_cols=287 Identities=18% Similarity=0.207 Sum_probs=197.8
Q ss_pred EEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEE
Q 036049 63 VVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFL 142 (517)
Q Consensus 63 l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 142 (517)
++.++++++.++ .+|. .+ .++|++|++++|.++.. .+..+..+. +|++|++++|.+.+..|..|+++++|++|
T Consensus 35 l~~l~~~~~~l~-~ip~--~~--~~~l~~L~l~~n~i~~~-~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 35 LRVVQCSDLGLK-AVPK--EI--SPDTTLLDLQNNDISEL-RKDDFKGLQ-HLYALVLVNNKISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp TTEEECCSSCCS-SCCS--CC--CTTCCEEECCSSCCCEE-CTTTTTTCT-TCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred CCEEECCCCCcc-ccCC--CC--CCCCeEEECCCCcCCcc-CHhHhhCCC-CCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence 445666666665 3333 33 36788888888888762 233555555 88888888888877778888888888888
Q ss_pred EccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeE
Q 036049 143 YLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNAL 222 (517)
Q Consensus 143 ~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L 222 (517)
++++|.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.++.. +..+..+.. + +|++|
T Consensus 108 ~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~--l-~L~~L 177 (332)
T 2ft3_A 108 YISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS----GFEPGAFDG--L-KLNYL 177 (332)
T ss_dssp ECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG----GSCTTSSCS--C-CCSCC
T ss_pred ECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC----CCCcccccC--C-ccCEE
Confidence 88888888 5555554 7888888888888866666788888888888888877521 123333333 4 88888
Q ss_pred eccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccc
Q 036049 223 NLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLL 302 (517)
Q Consensus 223 ~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 302 (517)
++++|.+++++... .++|++|++++|.+++ ++...+..
T Consensus 178 ~l~~n~l~~l~~~~---------------~~~L~~L~l~~n~i~~-~~~~~l~~-------------------------- 215 (332)
T 2ft3_A 178 RISEAKLTGIPKDL---------------PETLNELHLDHNKIQA-IELEDLLR-------------------------- 215 (332)
T ss_dssp BCCSSBCSSCCSSS---------------CSSCSCCBCCSSCCCC-CCTTSSTT--------------------------
T ss_pred ECcCCCCCccCccc---------------cCCCCEEECCCCcCCc-cCHHHhcC--------------------------
Confidence 88888888754321 2678888888888873 33222222
Q ss_pred hhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCC
Q 036049 303 MTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLS 382 (517)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 382 (517)
.+.|+.|++++|.+++..+..+..+++|+.|+|++|+++ .+|..+..+++|++|+++
T Consensus 216 ----------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 216 ----------------------YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH 272 (332)
T ss_dssp ----------------------CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECC
T ss_pred ----------------------CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECC
Confidence 345666777777777766667778888888888888887 677778888888888888
Q ss_pred CCcccccCcccccc------CCCCCEEeccCCccc--ccCCCC-CcCCccCCCcccCC
Q 036049 383 NNKFSGRIPQQLVE------LTFLAFFNVSDNYLT--GLIPQG-KQFATFDNTSFDGN 431 (517)
Q Consensus 383 ~N~l~~~~p~~l~~------l~~L~~L~l~~N~l~--~~~p~~-~~~~~l~~~~~~~N 431 (517)
+|++++..+..|.. .+.|+.|++++|++. +..|.. ..+..+..+++++|
T Consensus 273 ~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred CCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 88888665555544 356788888888876 333332 33555666666665
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=9.9e-31 Score=256.61 Aligned_cols=287 Identities=19% Similarity=0.218 Sum_probs=209.8
Q ss_pred EEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCch-hhhhcccCCcEEEccCCCCcccCCccCCCCCCCcE
Q 036049 63 VVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQP-EIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQF 141 (517)
Q Consensus 63 l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 141 (517)
++.++++++.++. +|. .+ .++|++|++++|.++. +++ .+..+. +|++|++++|.+.+..|..|+++++|++
T Consensus 33 l~~l~~~~~~l~~-lp~--~~--~~~l~~L~L~~n~i~~--~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (330)
T 1xku_A 33 LRVVQCSDLGLEK-VPK--DL--PPDTALLDLQNNKITE--IKDGDFKNLK-NLHTLILINNKISKISPGAFAPLVKLER 104 (330)
T ss_dssp TTEEECTTSCCCS-CCC--SC--CTTCCEEECCSSCCCC--BCTTTTTTCT-TCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CeEEEecCCCccc-cCc--cC--CCCCeEEECCCCcCCE--eChhhhccCC-CCCEEECCCCcCCeeCHHHhcCCCCCCE
Confidence 3455556666653 333 23 2688999999999987 554 455665 9999999999998777888999999999
Q ss_pred EEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCe
Q 036049 142 LYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNA 221 (517)
Q Consensus 142 L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~ 221 (517)
|++++|.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+... +..+..+.. +++|++
T Consensus 105 L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~--l~~L~~ 175 (330)
T 1xku_A 105 LYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS----GIENGAFQG--MKKLSY 175 (330)
T ss_dssp EECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG----GBCTTGGGG--CTTCCE
T ss_pred EECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc----CcChhhccC--CCCcCE
Confidence 999999998 5666554 7899999999999977778889999999999999988521 133444555 899999
Q ss_pred EeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCccc
Q 036049 222 LNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKL 301 (517)
Q Consensus 222 L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 301 (517)
|++++|.++.++.. ..++|++|++++|.+++..| ..+..
T Consensus 176 L~l~~n~l~~l~~~---------------~~~~L~~L~l~~n~l~~~~~-~~~~~------------------------- 214 (330)
T 1xku_A 176 IRIADTNITTIPQG---------------LPPSLTELHLDGNKITKVDA-ASLKG------------------------- 214 (330)
T ss_dssp EECCSSCCCSCCSS---------------CCTTCSEEECTTSCCCEECT-GGGTT-------------------------
T ss_pred EECCCCccccCCcc---------------ccccCCEEECCCCcCCccCH-HHhcC-------------------------
Confidence 99999998876432 13789999999999884333 33333
Q ss_pred chhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeC
Q 036049 302 LMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDL 381 (517)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 381 (517)
.+.|+.|++++|.+++..+..+..+++|++|+|++|+++ .+|..+..+++|++|++
T Consensus 215 -----------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l 270 (330)
T 1xku_A 215 -----------------------LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 270 (330)
T ss_dssp -----------------------CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEEC
T ss_pred -----------------------CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEEC
Confidence 344666677777777766667888888888888888888 77778888888888888
Q ss_pred CCCcccccCcccccc------CCCCCEEeccCCcccc--cCCCC-CcCCccCCCcccCC
Q 036049 382 SNNKFSGRIPQQLVE------LTFLAFFNVSDNYLTG--LIPQG-KQFATFDNTSFDGN 431 (517)
Q Consensus 382 s~N~l~~~~p~~l~~------l~~L~~L~l~~N~l~~--~~p~~-~~~~~l~~~~~~~N 431 (517)
++|+|++..+..|.. .+.|+.+++++|++.. ..|.. .....+..+++++|
T Consensus 271 ~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 888888666555543 3678888888888863 22221 23445566666665
No 35
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=2.2e-31 Score=279.80 Aligned_cols=329 Identities=21% Similarity=0.232 Sum_probs=226.8
Q ss_pred CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchh-hhhcccCCcEEEccCCCCcc-cCCccCCCCC
Q 036049 60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPE-IINLSCSLKLLDLRSCGFWG-KVPHSIGNFT 137 (517)
Q Consensus 60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~-~~p~~~~~l~ 137 (517)
..++++|+|++|.+++..+. .|.++++|++|++++|.+++ +++. +..+. +|++|++++|.+.+ ..|..|++++
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGD--AFYSLGSLEHLDLSDNHLSS--LSSSWFGPLS-SLKYLNLMGNPYQTLGVTSLFPNLT 123 (549)
T ss_dssp CTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTSCCCS--CCHHHHTTCT-TCCEEECTTCCCSSSCSSCSCTTCT
T ss_pred CCcccEEECCCCCcCccChh--hccccccCCEEECCCCccCc--cCHHHhccCC-CCcEEECCCCcccccchhhhhhccC
Confidence 46899999999999988777 89999999999999999987 5555 66666 99999999999965 4577899999
Q ss_pred CCcEEEccCCccccccc-ccccCCccccEEEcccccccccCchhhhc------------------------CCccccccc
Q 036049 138 RLQFLYLGFNNFSGDLL-GSIGNLRSLEAIYMSKCNFSGQITSSLRN------------------------LTELVVLDM 192 (517)
Q Consensus 138 ~L~~L~Ls~n~i~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~------------------------l~~L~~L~l 192 (517)
+|++|++++|.+.+.+| ..|.++++|++|++++|.+++..|..+.. +++|++|++
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 203 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEE
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEc
Confidence 99999999998444444 67999999999999999998877777655 455666666
Q ss_pred ccccCccee----ccc-----------------c----------------------------------------------
Q 036049 193 AQNSYGGTM----EIE-----------------G---------------------------------------------- 205 (517)
Q Consensus 193 ~~N~l~~~~----~~~-----------------~---------------------------------------------- 205 (517)
++|.+++.. .+. +
T Consensus 204 ~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L 283 (549)
T 2z81_A 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV 283 (549)
T ss_dssp ESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTC
T ss_pred cCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccc
Confidence 666665420 000 0
Q ss_pred ----------------------------------------ccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCC
Q 036049 206 ----------------------------------------KVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEE 245 (517)
Q Consensus 206 ----------------------------------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~ 245 (517)
.+|..++. .+++|++|++++|++++..+. .
T Consensus 284 ~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~-~l~~L~~L~Ls~N~l~~~~~~---------~ 353 (549)
T 2z81_A 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQ-HLKSLEFLDLSENLMVEEYLK---------N 353 (549)
T ss_dssp CEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHH-HCTTCCEEECCSSCCCHHHHH---------H
T ss_pred ccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHh-cCccccEEEccCCcccccccc---------c
Confidence 01111100 134444444444444432110 0
Q ss_pred CCCCCCCCcccEEEccCCcCCCCCCh--hhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCcccc--C
Q 036049 246 PRTGCGFSKLRIIDLSDNRFTGKLPS--KSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMA--Y 321 (517)
Q Consensus 246 ~~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 321 (517)
...+..+++|++|++++|+++ .++. ..+..+++|+.|+++++... .. +.. ......+..+.+.+.... .
T Consensus 354 ~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l-p~~----~~~~~~L~~L~Ls~N~l~~l~ 426 (549)
T 2z81_A 354 SACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PM-PDS----CQWPEKMRFLNLSSTGIRVVK 426 (549)
T ss_dssp HTCTTSSTTCCEEECTTSCCC-CHHHHHHHGGGCTTCCEEECTTCCCC-CC-CSC----CCCCTTCCEEECTTSCCSCCC
T ss_pred hhhhhccccCcEEEccCCccc-ccccchhhhhcCCCCCEEECCCCCCc-cC-Chh----hcccccccEEECCCCCccccc
Confidence 011345667777777777776 3332 34666777777777764322 11 100 001111222222221111 1
Q ss_pred CCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCC
Q 036049 322 NKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLA 401 (517)
Q Consensus 322 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 401 (517)
...++.|+.|++++|++++.. ..+++|++|+|++|+++ .+|. ...+++|++|+|++|++++..|..+..+++|+
T Consensus 427 ~~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 500 (549)
T 2z81_A 427 TCIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500 (549)
T ss_dssp TTSCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCC
T ss_pred chhcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccC
Confidence 123468899999999988642 57899999999999999 6776 56799999999999999988888899999999
Q ss_pred EEeccCCcccccCCC
Q 036049 402 FFNVSDNYLTGLIPQ 416 (517)
Q Consensus 402 ~L~l~~N~l~~~~p~ 416 (517)
.|++++|++++.+|.
T Consensus 501 ~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 501 KIWLHTNPWDCSCPR 515 (549)
T ss_dssp EEECCSSCBCCCHHH
T ss_pred EEEecCCCccCCCcc
Confidence 999999999988874
No 36
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=9.4e-31 Score=269.11 Aligned_cols=322 Identities=22% Similarity=0.258 Sum_probs=195.3
Q ss_pred CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCc
Q 036049 61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQ 140 (517)
Q Consensus 61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 140 (517)
.++++|+|++|.+++.. .+.++++|++|++++|.+.+ +++ +..+. +|++|++++|.+.+. +. +.++++|+
T Consensus 68 ~~L~~L~Ls~n~l~~~~----~~~~l~~L~~L~l~~n~l~~--~~~-~~~l~-~L~~L~L~~n~l~~~-~~-~~~l~~L~ 137 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDIT----PLKNLTKLVDILMNNNQIAD--ITP-LANLT-NLTGLTLFNNQITDI-DP-LKNLTNLN 137 (466)
T ss_dssp TTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCC--CGG-GTTCT-TCCEEECCSSCCCCC-GG-GTTCTTCS
T ss_pred cCCCEEECCCCccCCch----hhhccccCCEEECCCCcccc--Chh-hcCCC-CCCEEECCCCCCCCC-hH-HcCCCCCC
Confidence 45666666666665432 25566666666666666655 333 44444 666666666666433 22 56666666
Q ss_pred EEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCC
Q 036049 141 FLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLN 220 (517)
Q Consensus 141 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~ 220 (517)
+|++++|.+.+ ++ .+..+++|++|+++ |.+.+. ..+.++++|++|++++|.+.+ ++ .+.. +++|+
T Consensus 138 ~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~~-------~~-~l~~--l~~L~ 202 (466)
T 1o6v_A 138 RLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVSD-------IS-VLAK--LTNLE 202 (466)
T ss_dssp EEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCCC-------CG-GGGG--CTTCS
T ss_pred EEECCCCccCC-Ch-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCCC-------Ch-hhcc--CCCCC
Confidence 66666666653 22 35555555555554 233322 125666677777777776652 22 1333 66777
Q ss_pred eEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcc
Q 036049 221 ALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGK 300 (517)
Q Consensus 221 ~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 300 (517)
+|++++|.+++..+ +..+++|++|++++|.++ .++ .+..+++|+.|+++++........ ..
T Consensus 203 ~L~l~~n~l~~~~~--------------~~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~--~~ 263 (466)
T 1o6v_A 203 SLIATNNQISDITP--------------LGILTNLDELSLNGNQLK-DIG--TLASLTNLTDLDLANNQISNLAPL--SG 263 (466)
T ss_dssp EEECCSSCCCCCGG--------------GGGCTTCCEEECCSSCCC-CCG--GGGGCTTCSEEECCSSCCCCCGGG--TT
T ss_pred EEEecCCccccccc--------------ccccCCCCEEECCCCCcc-cch--hhhcCCCCCEEECCCCccccchhh--hc
Confidence 77777776665432 244566666666666665 232 255566666666665332111000 00
Q ss_pred cchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeee
Q 036049 301 LLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLD 380 (517)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 380 (517)
........+....+.+... ...++.|+.|++++|.+++..+ +..+++|+.|+|++|++++..| +..+++|++|+
T Consensus 264 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 337 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeE
Confidence 0000001111111111111 2336778899999999886544 7788999999999999986655 77889999999
Q ss_pred CCCCcccccCccccccCCCCCEEeccCCcccccCCCCCcCCccCCCcccCCCCCC
Q 036049 381 LSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNSGLC 435 (517)
Q Consensus 381 Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~Np~~c 435 (517)
+++|++++. ..+..+++|+.|++++|++++.+| ...+..+..+++.+|++..
T Consensus 338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred CCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 999998854 468889999999999999998887 5677888888888887765
No 37
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=3.1e-31 Score=291.85 Aligned_cols=333 Identities=19% Similarity=0.136 Sum_probs=219.3
Q ss_pred EEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccC-CccCCCCCCCcEE
Q 036049 64 VKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKV-PHSIGNFTRLQFL 142 (517)
Q Consensus 64 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L 142 (517)
+..+.++++++.. | . -.++|++|+|++|.++.. .+..+..+. +|++|+|++|.+.+.+ |..|.++++|++|
T Consensus 7 ~~~dcs~~~L~~v-P---~--lp~~l~~LdLs~N~i~~i-~~~~~~~l~-~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L 78 (844)
T 3j0a_A 7 RIAFYRFCNLTQV-P---Q--VLNTTERLLLSFNYIRTV-TASSFPFLE-QLQLLELGSQYTPLTIDKEAFRNLPNLRIL 78 (844)
T ss_dssp EEEEESCCCSSCC-C---S--SCTTCCEEEEESCCCCEE-CSSSCSSCC-SCSEEEECTTCCCCEECTTTTSSCTTCCEE
T ss_pred eEEEccCCCCCCC-C---C--CCCCcCEEECCCCcCCcc-ChhHCcccc-cCeEEeCCCCCCccccCHHHhcCCCCCCEE
Confidence 3456677777644 2 2 357999999999999874 456677777 9999999999665555 7889999999999
Q ss_pred EccCCcccccccccccCCccccEEEcccccccccCchh--hhcCCcccccccccccCcceeccccccccccccccCCCCC
Q 036049 143 YLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSS--LRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLN 220 (517)
Q Consensus 143 ~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~ 220 (517)
+|++|.+++..|..|+++++|++|+|++|.+++..|.. |.++++|++|++++|.+++. ..+..+.. +++|+
T Consensus 79 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~-----~~~~~~~~--L~~L~ 151 (844)
T 3j0a_A 79 DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL-----YLHPSFGK--LNSLK 151 (844)
T ss_dssp ECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC-----CCCGGGGT--CSSCC
T ss_pred ECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc-----ccchhHhh--CCCCC
Confidence 99999999888999999999999999999999766665 99999999999999999731 12345565 99999
Q ss_pred eEeccCCcccccCCCCC-------C---------CCCCCCCCCCCCCCC------cccEEEccCCcCCCCCChhhhhcc-
Q 036049 221 ALNLSHNLLTGFDQHLV-------L---------LPGNNEEPRTGCGFS------KLRIIDLSDNRFTGKLPSKSFLCW- 277 (517)
Q Consensus 221 ~L~Ls~n~l~~~~~~~~-------l---------l~~~~~~~~~~~~l~------~L~~L~Ls~N~l~~~~p~~~~~~l- 277 (517)
+|++++|.+++..+... + +.+.. +..+..++ +|++|++++|.+++.+|......+
T Consensus 152 ~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~--~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~ 229 (844)
T 3j0a_A 152 SIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV--SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAIS 229 (844)
T ss_dssp EEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCC--CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSC
T ss_pred EEECCCCcCCeeCHHHcccccCCccceEECCCCcccccc--ccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcC
Confidence 99999999987644310 0 00100 11111111 255555555555544443322211
Q ss_pred -cccceeccCccccccc----ccCCCc--ccchhhhccceeee-----ecCccccCCCchhhhhhhhCCCCCCcccCccc
Q 036049 278 -NAMKIVNASELRYLQD----VLSPSG--KLLMTTYDYLLTMN-----IKGRMMAYNKIPDILAGIILSNKSFDGAIPAS 345 (517)
Q Consensus 278 -~~L~~L~l~~~~~l~~----~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 345 (517)
..+..+.+.....-.. ...... .........+..+. +.+........++.|+.|++++|.+++..|..
T Consensus 230 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 309 (844)
T 3j0a_A 230 KSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA 309 (844)
T ss_dssp SCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTT
T ss_pred cccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHH
Confidence 2222232221000000 000000 00000001111111 11122233344567778888888887777777
Q ss_pred ccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCccccc
Q 036049 346 ISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGL 413 (517)
Q Consensus 346 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 413 (517)
|..+++|+.|+|++|++++..|..|..+++|++|++++|++.+..+..|..+++|++|++++|.+++.
T Consensus 310 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i 377 (844)
T 3j0a_A 310 FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377 (844)
T ss_dssp TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC
T ss_pred hcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc
Confidence 77788888888888888766677788888888888888888766666777788888888888877753
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=3.9e-30 Score=254.25 Aligned_cols=282 Identities=22% Similarity=0.288 Sum_probs=233.4
Q ss_pred CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCC
Q 036049 60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRL 139 (517)
Q Consensus 60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 139 (517)
..++++|++++|.+++.. .+..+++|++|++++|.++. ++ .+..+. +|++|++++|.+.+ ++. +..+++|
T Consensus 65 ~~~L~~L~l~~n~i~~~~----~~~~l~~L~~L~L~~n~i~~--~~-~~~~l~-~L~~L~l~~n~i~~-~~~-~~~l~~L 134 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDIS----PLSNLVKLTNLYIGTNKITD--IS-ALQNLT-NLRELYLNEDNISD-ISP-LANLTKM 134 (347)
T ss_dssp CTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCC--CG-GGTTCT-TCSEEECTTSCCCC-CGG-GTTCTTC
T ss_pred cCCccEEEccCCccccch----hhhcCCcCCEEEccCCcccC--ch-HHcCCC-cCCEEECcCCcccC-chh-hccCCce
Confidence 468999999999997543 38899999999999999987 54 566666 99999999999954 444 8999999
Q ss_pred cEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCC
Q 036049 140 QFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNL 219 (517)
Q Consensus 140 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L 219 (517)
++|++++|.....+ ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+. .++. +.. +++|
T Consensus 135 ~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~-------~~~~-~~~--l~~L 201 (347)
T 4fmz_A 135 YSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE-------DISP-LAS--LTSL 201 (347)
T ss_dssp CEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC-------CCGG-GGG--CTTC
T ss_pred eEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc-------cccc-ccC--CCcc
Confidence 99999999766444 449999999999999999985443 889999999999999987 3333 444 8999
Q ss_pred CeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCc
Q 036049 220 NALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSG 299 (517)
Q Consensus 220 ~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 299 (517)
++|++++|.+++..+ +..+++|++|++++|.++ .++. +..+++|+.|+++++.....
T Consensus 202 ~~L~l~~n~l~~~~~--------------~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~------ 258 (347)
T 4fmz_A 202 HYFTAYVNQITDITP--------------VANMTRLNSLKIGNNKIT-DLSP--LANLSQLTWLEIGTNQISDI------ 258 (347)
T ss_dssp CEEECCSSCCCCCGG--------------GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC------
T ss_pred ceeecccCCCCCCch--------------hhcCCcCCEEEccCCccC-CCcc--hhcCCCCCEEECCCCccCCC------
Confidence 999999999987643 367899999999999998 4554 78899999999887432210
Q ss_pred ccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCee
Q 036049 300 KLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESL 379 (517)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 379 (517)
.....+++|+.|++++|.+++. ..+..+++|+.|++++|++++..|..+..+++|++|
T Consensus 259 --------------------~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 316 (347)
T 4fmz_A 259 --------------------NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316 (347)
T ss_dssp --------------------GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred --------------------hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence 1112367899999999999864 458889999999999999998889999999999999
Q ss_pred eCCCCcccccCccccccCCCCCEEeccCCccc
Q 036049 380 DLSNNKFSGRIPQQLVELTFLAFFNVSDNYLT 411 (517)
Q Consensus 380 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 411 (517)
++++|++++..| +..+++|++|++++|+|+
T Consensus 317 ~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 317 FLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp ECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EccCCccccccC--hhhhhccceeehhhhccc
Confidence 999999997655 889999999999999986
No 39
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5e-30 Score=251.57 Aligned_cols=268 Identities=18% Similarity=0.193 Sum_probs=141.3
Q ss_pred cEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcE
Q 036049 62 HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQF 141 (517)
Q Consensus 62 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 141 (517)
.++.|+|++|.+++..+. .|.++++|++|++++|.++.. .|..+..+. +|++|++++|.+. .+|..+. ++|++
T Consensus 53 ~l~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~-~L~~L~Ls~n~l~-~l~~~~~--~~L~~ 125 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDG--DFKNLKNLHTLILINNKISKI-SPGAFAPLV-KLERLYLSKNQLK-ELPEKMP--KTLQE 125 (330)
T ss_dssp TCCEEECCSSCCCCBCTT--TTTTCTTCCEEECCSSCCCCB-CTTTTTTCT-TCCEEECCSSCCS-BCCSSCC--TTCCE
T ss_pred CCeEEECCCCcCCEeChh--hhccCCCCCEEECCCCcCCee-CHHHhcCCC-CCCEEECCCCcCC-ccChhhc--ccccE
Confidence 455666666666554444 555666666666666666542 244444444 6666666666653 3444333 45666
Q ss_pred EEccCCcccccccccccCCccccEEEcccccccc--cCchhhhcCCcccccccccccCcceeccccccccccccccCCCC
Q 036049 142 LYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSG--QITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNL 219 (517)
Q Consensus 142 L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L 219 (517)
|++++|.+++..+..|.++++|++|++++|.+.. ..+..+.++++|++|++++|.++ .+|..+ .++|
T Consensus 126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-------~l~~~~----~~~L 194 (330)
T 1xku_A 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-------TIPQGL----PPSL 194 (330)
T ss_dssp EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-------SCCSSC----CTTC
T ss_pred EECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-------cCCccc----cccC
Confidence 6666666665555555666666666666666542 44555566666666666666554 333322 2456
Q ss_pred CeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCc
Q 036049 220 NALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSG 299 (517)
Q Consensus 220 ~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 299 (517)
++|++++|.+++..+. .+..+++|++|++++|.+++ ++...+..
T Consensus 195 ~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~----------------------- 238 (330)
T 1xku_A 195 TELHLDGNKITKVDAA------------SLKGLNNLAKLGLSFNSISA-VDNGSLAN----------------------- 238 (330)
T ss_dssp SEEECTTSCCCEECTG------------GGTTCTTCCEEECCSSCCCE-ECTTTGGG-----------------------
T ss_pred CEEECCCCcCCccCHH------------HhcCCCCCCEEECCCCcCce-eChhhccC-----------------------
Confidence 6666666666554322 23455566666666666552 22211211
Q ss_pred ccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccC------C
Q 036049 300 KLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGN------L 373 (517)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~------l 373 (517)
.+.|+.|++++|.++ .+|..+..+++|++|++++|++++..+..|.. .
T Consensus 239 -------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~ 292 (330)
T 1xku_A 239 -------------------------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK 292 (330)
T ss_dssp -------------------------STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTS
T ss_pred -------------------------CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccccc
Confidence 233444555555555 45555555666666666666665444444432 2
Q ss_pred CCCCeeeCCCCcccc--cCccccccCCCCCEEeccCCc
Q 036049 374 TNLESLDLSNNKFSG--RIPQQLVELTFLAFFNVSDNY 409 (517)
Q Consensus 374 ~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~l~~N~ 409 (517)
+.|+.|++++|.+.. ..|..|..+..++.+++++|+
T Consensus 293 ~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 293 ASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 455566666665542 334455555666666666553
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.3e-30 Score=253.04 Aligned_cols=267 Identities=24% Similarity=0.302 Sum_probs=221.1
Q ss_pred CCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEE
Q 036049 88 HLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIY 167 (517)
Q Consensus 88 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 167 (517)
+++.++++++.++. +|..+. ++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..|+++++|++|+
T Consensus 34 ~l~~l~~~~~~l~~--ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA--VPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCSS--CCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCccc--cCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 68899999999876 776653 3899999999999877788899999999999999999988889999999999999
Q ss_pred cccccccccCchhhhcCCcccccccccccCcceeccccccccc-cccccCCCCCeEeccCCcccccCCCCCCCCCCCCCC
Q 036049 168 MSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKW-LLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEP 246 (517)
Q Consensus 168 L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~ 246 (517)
+++|.++ .+|..+. ++|++|++++|.++ .++.. +.. +++|++|++++|.++..... +
T Consensus 109 L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-------~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~----------~ 166 (332)
T 2ft3_A 109 ISKNHLV-EIPPNLP--SSLVELRIHDNRIR-------KVPKGVFSG--LRNMNCIEMGGNPLENSGFE----------P 166 (332)
T ss_dssp CCSSCCC-SCCSSCC--TTCCEEECCSSCCC-------CCCSGGGSS--CSSCCEEECCSCCCBGGGSC----------T
T ss_pred CCCCcCC-ccCcccc--ccCCEEECCCCccC-------ccCHhHhCC--CccCCEEECCCCccccCCCC----------c
Confidence 9999998 5565544 88999999999887 44443 444 89999999999998742111 1
Q ss_pred CCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchh
Q 036049 247 RTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPD 326 (517)
Q Consensus 247 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (517)
..+..+ +|++|++++|.++ .+|... .+
T Consensus 167 ~~~~~l-~L~~L~l~~n~l~-~l~~~~---------------------------------------------------~~ 193 (332)
T 2ft3_A 167 GAFDGL-KLNYLRISEAKLT-GIPKDL---------------------------------------------------PE 193 (332)
T ss_dssp TSSCSC-CCSCCBCCSSBCS-SCCSSS---------------------------------------------------CS
T ss_pred ccccCC-ccCEEECcCCCCC-ccCccc---------------------------------------------------cC
Confidence 133555 8999999999987 455321 24
Q ss_pred hhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEecc
Q 036049 327 ILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVS 406 (517)
Q Consensus 327 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 406 (517)
.|+.|++++|.+++..+..+..+++|+.|+|++|++++..+..+..+++|++|+|++|+++ .+|..+..+++|++|+++
T Consensus 194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH 272 (332)
T ss_dssp SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECC
T ss_pred CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECC
Confidence 5788899999999888889999999999999999999888888999999999999999999 788889999999999999
Q ss_pred CCcccccCCCCC-------cCCccCCCcccCCCCCC
Q 036049 407 DNYLTGLIPQGK-------QFATFDNTSFDGNSGLC 435 (517)
Q Consensus 407 ~N~l~~~~p~~~-------~~~~l~~~~~~~Np~~c 435 (517)
+|++++..+... .+..+..+++.+||+.+
T Consensus 273 ~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp SSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred CCCCCccChhHccccccccccccccceEeecCcccc
Confidence 999998766532 14557788899999874
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=1.3e-29 Score=270.75 Aligned_cols=349 Identities=21% Similarity=0.159 Sum_probs=245.0
Q ss_pred CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCc
Q 036049 61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQ 140 (517)
Q Consensus 61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 140 (517)
.+++.|+|++|.|++..+. +|.++++|++|+|++|+++. +|+..+...++|++|++++|.+.+..+..|+++++|+
T Consensus 76 ~~L~~L~Ls~N~i~~i~~~--~f~~L~~L~~L~Ls~N~l~~--l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~ 151 (635)
T 4g8a_A 76 PELQVLDLSRCEIQTIEDG--AYQSLSHLSTLILTGNPIQS--LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 151 (635)
T ss_dssp TTCCEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCCCE--ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred CCCCEEECCCCcCCCcChh--HhcCCCCCCEEEccCCcCCC--CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccC
Confidence 5799999999999988777 89999999999999999987 7766554444999999999999877777899999999
Q ss_pred EEEccCCcccc-cccccccCCccccEEEcccccccccCchhhhcCCccc----ccccccccCccee--------------
Q 036049 141 FLYLGFNNFSG-DLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELV----VLDMAQNSYGGTM-------------- 201 (517)
Q Consensus 141 ~L~Ls~n~i~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~----~L~l~~N~l~~~~-------------- 201 (517)
+|++++|.+++ ..|..++.+++|++|++++|.+++..+..|..+.+++ .++++.|.+....
T Consensus 152 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l 231 (635)
T 4g8a_A 152 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 231 (635)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEE
T ss_pred eeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhh
Confidence 99999999976 4678889999999999999999877777665544332 2223332221100
Q ss_pred --------------------------------------------------------------------------------
Q 036049 202 -------------------------------------------------------------------------------- 201 (517)
Q Consensus 202 -------------------------------------------------------------------------------- 201 (517)
T Consensus 232 ~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l 311 (635)
T 4g8a_A 232 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSF 311 (635)
T ss_dssp ESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEE
T ss_pred hcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccc
Confidence
Q ss_pred ---------------------------ccc-------------------cccccccccccCCCCCeEeccCCcccccCCC
Q 036049 202 ---------------------------EIE-------------------GKVHKWLLDPNMQNLNALNLSHNLLTGFDQH 235 (517)
Q Consensus 202 ---------------------------~~~-------------------~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 235 (517)
.+. ...+.... .+++|+.|++++|.+......
T Consensus 312 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~--~l~~L~~L~ls~n~l~~~~~~ 389 (635)
T 4g8a_A 312 SLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCC 389 (635)
T ss_dssp EEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCC--BCTTCCEEECCSSCCBEEEEC
T ss_pred cccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccc--cccccccchhhcccccccccc
Confidence 000 00000111 278899999999987643211
Q ss_pred C-------CC----CC--CCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccc
Q 036049 236 L-------VL----LP--GNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLL 302 (517)
Q Consensus 236 ~-------~l----l~--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 302 (517)
. .+ +. +.......+..+++|+.++++.|+.....+...|..+..++.++++................
T Consensus 390 ~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~ 469 (635)
T 4g8a_A 390 SQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 469 (635)
T ss_dssp CHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred ccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccch
Confidence 1 00 00 01111223456677777777777766555555666677777776665322111000000000
Q ss_pred hhhhccceeee-ecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeC
Q 036049 303 MTTYDYLLTMN-IKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDL 381 (517)
Q Consensus 303 ~~~~~~~~~~~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 381 (517)
......+.... ............++|+.|+|++|++++..|..|.++++|++|+|++|+|++..|..|..+++|++|+|
T Consensus 470 ~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 549 (635)
T 4g8a_A 470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 549 (635)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEEC
T ss_pred hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEEC
Confidence 00000111111 11112233445778999999999999999999999999999999999999888889999999999999
Q ss_pred CCCcccccCccccccC-CCCCEEeccCCcccccCC
Q 036049 382 SNNKFSGRIPQQLVEL-TFLAFFNVSDNYLTGLIP 415 (517)
Q Consensus 382 s~N~l~~~~p~~l~~l-~~L~~L~l~~N~l~~~~p 415 (517)
++|+|++..|..+..+ ++|++|++++|++++...
T Consensus 550 s~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 550 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 9999999999999988 689999999999997654
No 42
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.5e-30 Score=257.86 Aligned_cols=283 Identities=18% Similarity=0.202 Sum_probs=207.4
Q ss_pred CCCCcccceeecCCCCCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCch-hhhhcccCCcEEEccCC
Q 036049 45 NVDCCSWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQP-EIINLSCSLKLLDLRSC 123 (517)
Q Consensus 45 ~~~~C~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n 123 (517)
...+|.|.|+ | +++++.++. +|. .+. ++|++|++++|.++. ++. .+..+. +|++|++++|
T Consensus 26 ~~~~C~~~~~-c----------~~~~~~l~~-iP~--~~~--~~L~~L~l~~n~i~~--~~~~~~~~l~-~L~~L~L~~n 86 (353)
T 2z80_A 26 ASLSCDRNGI-C----------KGSSGSLNS-IPS--GLT--EAVKSLDLSNNRITY--ISNSDLQRCV-NLQALVLTSN 86 (353)
T ss_dssp -CCEECTTSE-E----------ECCSTTCSS-CCT--TCC--TTCCEEECTTSCCCE--ECTTTTTTCT-TCCEEECTTS
T ss_pred cCCCCCCCeE-e----------eCCCCCccc-ccc--ccc--ccCcEEECCCCcCcc--cCHHHhccCC-CCCEEECCCC
Confidence 4567889876 5 445677763 343 332 589999999999886 555 455555 9999999999
Q ss_pred CCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCc-hhhhcCCccccccccccc-Cccee
Q 036049 124 GFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQIT-SSLRNLTELVVLDMAQNS-YGGTM 201 (517)
Q Consensus 124 ~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~N~-l~~~~ 201 (517)
.+.+..|..|+++++|++|++++|.+++..+..|+++++|++|++++|.+++..+ ..+.++++|++|++++|. +.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~-- 164 (353)
T 2z80_A 87 GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK-- 164 (353)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE--
T ss_pred ccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc--
Confidence 9987778889999999999999999986555568889999999999999884433 478889999999999884 541
Q ss_pred ccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccc
Q 036049 202 EIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMK 281 (517)
Q Consensus 202 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~ 281 (517)
..+..+.. +++|++|++++|.+++..+. .+..+++|++|++++|.+. .+|...+..+++|+
T Consensus 165 ----~~~~~~~~--l~~L~~L~l~~n~l~~~~~~------------~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~ 225 (353)
T 2z80_A 165 ----IQRKDFAG--LTFLEELEIDASDLQSYEPK------------SLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVE 225 (353)
T ss_dssp ----ECTTTTTT--CCEEEEEEEEETTCCEECTT------------TTTTCSEEEEEEEECSCST-THHHHHHHHTTTEE
T ss_pred ----cCHHHccC--CCCCCEEECCCCCcCccCHH------------HHhccccCCeecCCCCccc-cchhhhhhhccccc
Confidence 22334545 88899999999998876443 3577889999999999886 66655444444444
Q ss_pred eeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccc---cCCCCCCeEeCc
Q 036049 282 IVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASI---SNLKGLQVLNLH 358 (517)
Q Consensus 282 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~---~~l~~L~~L~Ls 358 (517)
.| ++++|.+++..+..+ .....++.++|+
T Consensus 226 ~L------------------------------------------------~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~ 257 (353)
T 2z80_A 226 CL------------------------------------------------ELRDTDLDTFHFSELSTGETNSLIKKFTFR 257 (353)
T ss_dssp EE------------------------------------------------EEESCBCTTCCCC------CCCCCCEEEEE
T ss_pred EE------------------------------------------------ECCCCccccccccccccccccchhhccccc
Confidence 44 444454444322222 234567777787
Q ss_pred Cccccc----cCChhccCCCCCCeeeCCCCcccccCccc-cccCCCCCEEeccCCcccccCCC
Q 036049 359 NNNLQG----HIPSCLGNLTNLESLDLSNNKFSGRIPQQ-LVELTFLAFFNVSDNYLTGLIPQ 416 (517)
Q Consensus 359 ~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~l~~N~l~~~~p~ 416 (517)
++.+++ .+|..+..+++|++|+|++|+++ .+|.. |..+++|++|++++|++++.+|.
T Consensus 258 ~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 258 NVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp SCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred cccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 777764 46778889999999999999998 55555 58899999999999999987764
No 43
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=1.7e-29 Score=257.77 Aligned_cols=229 Identities=19% Similarity=0.202 Sum_probs=137.9
Q ss_pred CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccc
Q 036049 114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMA 193 (517)
Q Consensus 114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 193 (517)
++++|+|++|.+.+..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|.++...+..|..+++|++|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 55555555555555555555666666666666666655555556666666666666666654444455555666666666
Q ss_pred cccCcceecccccccc-ccccccCCCCCeEeccCC-cccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCCh
Q 036049 194 QNSYGGTMEIEGKVHK-WLLDPNMQNLNALNLSHN-LLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPS 271 (517)
Q Consensus 194 ~N~l~~~~~~~~~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 271 (517)
+|.++ .++. .+.. +++|++|++++| .+..+++. .+.++++|++|++++|.++ .+|.
T Consensus 145 ~N~i~-------~~~~~~~~~--l~~L~~L~l~~~~~l~~i~~~------------~~~~l~~L~~L~L~~n~l~-~~~~ 202 (440)
T 3zyj_A 145 NNPIE-------SIPSYAFNR--IPSLRRLDLGELKRLSYISEG------------AFEGLSNLRYLNLAMCNLR-EIPN 202 (440)
T ss_dssp SCCCC-------EECTTTTTT--CTTCCEEECCCCTTCCEECTT------------TTTTCSSCCEEECTTSCCS-SCCC
T ss_pred CCccc-------ccCHHHhhh--CcccCEeCCCCCCCcceeCcc------------hhhcccccCeecCCCCcCc-cccc
Confidence 66554 2222 2222 556666666653 23322211 2455666777777776665 3331
Q ss_pred hhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCC
Q 036049 272 KSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKG 351 (517)
Q Consensus 272 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 351 (517)
+.. ..+|+.|++++|.+++..|..|..+++
T Consensus 203 --~~~------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 232 (440)
T 3zyj_A 203 --LTP------------------------------------------------LIKLDELDLSGNHLSAIRPGSFQGLMH 232 (440)
T ss_dssp --CTT------------------------------------------------CSSCCEEECTTSCCCEECTTTTTTCTT
T ss_pred --cCC------------------------------------------------CcccCEEECCCCccCccChhhhccCcc
Confidence 100 233445555555555555666777777
Q ss_pred CCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccC
Q 036049 352 LQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLI 414 (517)
Q Consensus 352 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 414 (517)
|+.|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|++.+..
T Consensus 233 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp CCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred CCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence 888888888887777777777788888888888887666666777777888888877776543
No 44
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=1.7e-29 Score=258.74 Aligned_cols=250 Identities=17% Similarity=0.182 Sum_probs=168.3
Q ss_pred CCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEc
Q 036049 89 LEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYM 168 (517)
Q Consensus 89 L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L 168 (517)
...++.+++.++. +|..+. ++|++|+|++|.+.+..|..|.++++|++|+|++|.+++..+..|.++++|++|+|
T Consensus 56 ~~~v~c~~~~l~~--iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 56 FSKVVCTRRGLSE--VPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SCEEECCSSCCSS--CCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CcEEEECCCCcCc--cCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 3455666666654 554332 26777777777776666667777777777777777777666667777777777777
Q ss_pred ccccccccCchhhhcCCcccccccccccCcceecccccccc-ccccccCCCCCeEeccCC-cccccCCCCCCCCCCCCCC
Q 036049 169 SKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHK-WLLDPNMQNLNALNLSHN-LLTGFDQHLVLLPGNNEEP 246 (517)
Q Consensus 169 ~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~ll~~~~~~~ 246 (517)
++|.+++..+..|..+++|++|++++|.++ .++. .+.. +++|++|++++| .+..+++.
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~--l~~L~~L~l~~~~~l~~i~~~----------- 190 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIE-------SIPSYAFNR--VPSLMRLDLGELKKLEYISEG----------- 190 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCC-------EECTTTTTT--CTTCCEEECCCCTTCCEECTT-----------
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcc-------eeCHhHHhc--CCcccEEeCCCCCCccccChh-----------
Confidence 777777555566777777777777777665 3333 2333 677777777763 34333222
Q ss_pred CCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchh
Q 036049 247 RTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPD 326 (517)
Q Consensus 247 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (517)
.+.++++|++|++++|+++ .+|. +. .+.
T Consensus 191 -~~~~l~~L~~L~L~~n~l~-~~~~--~~------------------------------------------------~l~ 218 (452)
T 3zyi_A 191 -AFEGLFNLKYLNLGMCNIK-DMPN--LT------------------------------------------------PLV 218 (452)
T ss_dssp -TTTTCTTCCEEECTTSCCS-SCCC--CT------------------------------------------------TCT
T ss_pred -hccCCCCCCEEECCCCccc-cccc--cc------------------------------------------------ccc
Confidence 3456777777777777776 3331 10 034
Q ss_pred hhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEecc
Q 036049 327 ILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVS 406 (517)
Q Consensus 327 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 406 (517)
+|+.|++++|.+++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+++
T Consensus 219 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 298 (452)
T 3zyi_A 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298 (452)
T ss_dssp TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECC
T ss_pred cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEcc
Confidence 45666666677766667777778888888888888887777778888888888888888886666677778888888888
Q ss_pred CCcccccCC
Q 036049 407 DNYLTGLIP 415 (517)
Q Consensus 407 ~N~l~~~~p 415 (517)
+|++.+...
T Consensus 299 ~Np~~CdC~ 307 (452)
T 3zyi_A 299 HNPWNCDCD 307 (452)
T ss_dssp SSCEECSTT
T ss_pred CCCcCCCCC
Confidence 888775543
No 45
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=3.7e-29 Score=255.52 Aligned_cols=299 Identities=18% Similarity=0.143 Sum_probs=196.6
Q ss_pred CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCc
Q 036049 61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQ 140 (517)
Q Consensus 61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 140 (517)
.++++|++++|.+++. + .+..+++|++|++++|.+++ +| +..+. +|++|++++|.+.+. + ++++++|+
T Consensus 42 ~~L~~L~Ls~n~l~~~-~---~l~~l~~L~~L~Ls~n~l~~--~~--~~~l~-~L~~L~Ls~N~l~~~-~--~~~l~~L~ 109 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T---GIEKLTGLTKLICTSNNITT--LD--LSQNT-NLTYLACDSNKLTNL-D--VTPLTKLT 109 (457)
T ss_dssp TTCCEEECCSSCCCCC-T---TGGGCTTCSEEECCSSCCSC--CC--CTTCT-TCSEEECCSSCCSCC-C--CTTCTTCC
T ss_pred CCCCEEEccCCCcccC-h---hhcccCCCCEEEccCCcCCe--Ec--cccCC-CCCEEECcCCCCcee-e--cCCCCcCC
Confidence 4678888888888754 2 57788888888888888876 43 55555 888888888888553 3 77888888
Q ss_pred EEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCC
Q 036049 141 FLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLN 220 (517)
Q Consensus 141 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~ 220 (517)
+|++++|.+++ +| ++.+++|++|++++|.+++. + +..+++|++|++++|...+ .+ .+.. +++|+
T Consensus 110 ~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~------~~--~~~~--l~~L~ 173 (457)
T 3bz5_A 110 YLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKIT------KL--DVTP--QTQLT 173 (457)
T ss_dssp EEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCC------CC--CCTT--CTTCC
T ss_pred EEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccc------cc--cccc--CCcCC
Confidence 88888888875 33 77888888888888888753 2 6677778888887775432 22 1223 67777
Q ss_pred eEeccCCcccccCCCC--CC----CCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccc
Q 036049 221 ALNLSHNLLTGFDQHL--VL----LPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDV 294 (517)
Q Consensus 221 ~L~Ls~n~l~~~~~~~--~l----l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~ 294 (517)
+|++++|++++++... .+ +.++.-....+..+++|++|++++|++++ +| +..+++|+.|+++++..-..
T Consensus 174 ~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~~- 248 (457)
T 3bz5_A 174 TLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTEL- 248 (457)
T ss_dssp EEECCSSCCCCCCCTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC-
T ss_pred EEECCCCccceeccccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcCCCc-
Confidence 7777777776643110 00 00000000123455666666666666653 44 44555666666555322110
Q ss_pred cCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCCh------
Q 036049 295 LSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPS------ 368 (517)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~------ 368 (517)
... ....+..+.. ....|+.|++++|.+.+.+| +..+++|+.|++++|...+.+|.
T Consensus 249 ~~~-------~l~~L~~L~l---------~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~ 310 (457)
T 3bz5_A 249 DVS-------TLSKLTTLHC---------IQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGIT 310 (457)
T ss_dssp CCT-------TCTTCCEEEC---------TTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCS
T ss_pred CHH-------HCCCCCEEec---------cCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcce
Confidence 000 0000000000 02357888899998887776 46789999999999987666654
Q ss_pred --hccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCccccc
Q 036049 369 --CLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGL 413 (517)
Q Consensus 369 --~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 413 (517)
.+..+++|++|++++|++++. + +..+++|+.|++++|++++.
T Consensus 311 ~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~l 354 (457)
T 3bz5_A 311 ELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQDF 354 (457)
T ss_dssp CCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCBC
T ss_pred EechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCCc
Confidence 256678999999999999974 3 88999999999999999973
No 46
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=3.7e-29 Score=257.17 Aligned_cols=304 Identities=25% Similarity=0.264 Sum_probs=205.8
Q ss_pred CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCC
Q 036049 60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRL 139 (517)
Q Consensus 60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 139 (517)
..+++.|++++|.+.+.. .+.++++|++|++++|.++. +++ +..+. +|++|++++|.+.+ ++ .+..+++|
T Consensus 89 l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~L~~n~l~~--~~~-~~~l~-~L~~L~l~~n~l~~-~~-~~~~l~~L 158 (466)
T 1o6v_A 89 LTKLVDILMNNNQIADIT----PLANLTNLTGLTLFNNQITD--IDP-LKNLT-NLNRLELSSNTISD-IS-ALSGLTSL 158 (466)
T ss_dssp CTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCC--CGG-GTTCT-TCSEEEEEEEEECC-CG-GGTTCTTC
T ss_pred cccCCEEECCCCccccCh----hhcCCCCCCEEECCCCCCCC--ChH-HcCCC-CCCEEECCCCccCC-Ch-hhccCCcc
Confidence 468999999999998654 38899999999999999987 554 66666 99999999999854 33 47777777
Q ss_pred cEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCC
Q 036049 140 QFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNL 219 (517)
Q Consensus 140 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L 219 (517)
++|+++ |.+.+.. .+.++++|++|++++|.+++. ..+..+++|++|++++|.+.+ ++. +.. +++|
T Consensus 159 ~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~-------~~~-~~~--l~~L 223 (466)
T 1o6v_A 159 QQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISD-------ITP-LGI--LTNL 223 (466)
T ss_dssp SEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-------CGG-GGG--CTTC
T ss_pred cEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcccc-------ccc-ccc--cCCC
Confidence 777775 3444322 266777777777777776632 246677777777777776652 111 222 6667
Q ss_pred CeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCc
Q 036049 220 NALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSG 299 (517)
Q Consensus 220 ~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 299 (517)
++|++++|.+++.. .+..+++|++|++++|.+++..| +..+++|+.|+++++........ .
T Consensus 224 ~~L~l~~n~l~~~~--------------~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~--~ 284 (466)
T 1o6v_A 224 DELSLNGNQLKDIG--------------TLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISPL--A 284 (466)
T ss_dssp CEEECCSSCCCCCG--------------GGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCGGG--T
T ss_pred CEEECCCCCcccch--------------hhhcCCCCCEEECCCCccccchh---hhcCCCCCEEECCCCccCccccc--c
Confidence 77777777666542 12445566666666666653222 45555566665555322110000 0
Q ss_pred ccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCee
Q 036049 300 KLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESL 379 (517)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 379 (517)
.........+....+.+... ...++.|+.|++++|.+++..| +..+++|+.|++++|++++. ..+..+++|+.|
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 358 (466)
T 1o6v_A 285 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWL 358 (466)
T ss_dssp TCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred CCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEE
Confidence 00000000111111111111 2346789999999999997765 78899999999999999864 468999999999
Q ss_pred eCCCCcccccCccccccCCCCCEEeccCCcccccCC
Q 036049 380 DLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIP 415 (517)
Q Consensus 380 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 415 (517)
++++|++++..| +..+++|+.|++++|++++.+.
T Consensus 359 ~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p~ 392 (466)
T 1o6v_A 359 SAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPV 392 (466)
T ss_dssp ECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCCB
T ss_pred eCCCCccCccch--hhcCCCCCEEeccCCcccCCch
Confidence 999999998776 8899999999999999998543
No 47
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=6.2e-29 Score=253.86 Aligned_cols=294 Identities=16% Similarity=0.127 Sum_probs=187.7
Q ss_pred CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCC
Q 036049 60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRL 139 (517)
Q Consensus 60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 139 (517)
..+++.|++++|.+++. .+..+++|++|++++|.+++ ++ +..+. +|++|++++|.+.+ +| ++.+++|
T Consensus 63 l~~L~~L~Ls~n~l~~~-----~~~~l~~L~~L~Ls~N~l~~--~~--~~~l~-~L~~L~L~~N~l~~-l~--~~~l~~L 129 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTL-----DLSQNTNLTYLACDSNKLTN--LD--VTPLT-KLTYLNCDTNKLTK-LD--VSQNPLL 129 (457)
T ss_dssp CTTCSEEECCSSCCSCC-----CCTTCTTCSEEECCSSCCSC--CC--CTTCT-TCCEEECCSSCCSC-CC--CTTCTTC
T ss_pred cCCCCEEEccCCcCCeE-----ccccCCCCCEEECcCCCCce--ee--cCCCC-cCCEEECCCCcCCe-ec--CCCCCcC
Confidence 35788888888888763 36778888888888888876 43 55555 88888888888755 44 7778888
Q ss_pred cEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceecccc--------------
Q 036049 140 QFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEG-------------- 205 (517)
Q Consensus 140 ~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~-------------- 205 (517)
++|++++|.+++. + ++.+++|++|++++|...+.+ .+..+++|++|++++|++++.. +..
T Consensus 130 ~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l 203 (457)
T 3bz5_A 130 TYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNI 203 (457)
T ss_dssp CEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCC
T ss_pred CEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcC
Confidence 8888888887753 2 566666666666666443333 3555666666666666655210 000
Q ss_pred -ccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceec
Q 036049 206 -KVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVN 284 (517)
Q Consensus 206 -~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~ 284 (517)
.+ .+.. +++|++|++++|++++++ +..+++|++|++++|++++ +|. ..++.|+.++
T Consensus 204 ~~~--~l~~--l~~L~~L~Ls~N~l~~ip---------------~~~l~~L~~L~l~~N~l~~-~~~---~~l~~L~~L~ 260 (457)
T 3bz5_A 204 TKL--DLNQ--NIQLTFLDCSSNKLTEID---------------VTPLTQLTYFDCSVNPLTE-LDV---STLSKLTTLH 260 (457)
T ss_dssp SCC--CCTT--CTTCSEEECCSSCCSCCC---------------CTTCTTCSEEECCSSCCSC-CCC---TTCTTCCEEE
T ss_pred Cee--cccc--CCCCCEEECcCCcccccC---------------ccccCCCCEEEeeCCcCCC-cCH---HHCCCCCEEe
Confidence 11 1222 455555555555555431 4678999999999999985 453 3456666666
Q ss_pred cCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcc--------cccCCCCCCeEe
Q 036049 285 ASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPA--------SISNLKGLQVLN 356 (517)
Q Consensus 285 l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~--------~~~~l~~L~~L~ 356 (517)
++... +......... ..+.. ....++.|+.|++++|...+.+|. .+..+++|+.|+
T Consensus 261 l~~n~-L~~L~l~~n~-------------~~~~~--~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~ 324 (457)
T 3bz5_A 261 CIQTD-LLEIDLTHNT-------------QLIYF--QAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLY 324 (457)
T ss_dssp CTTCC-CSCCCCTTCT-------------TCCEE--ECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE
T ss_pred ccCCC-CCEEECCCCc-------------cCCcc--cccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEE
Confidence 55421 1110000000 00000 012357899999999988776664 256678999999
Q ss_pred CcCccccccCChhccCCCCCCeeeCCCCcccccCccccc-------------cCCCCCEEeccCCcccccCCC
Q 036049 357 LHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLV-------------ELTFLAFFNVSDNYLTGLIPQ 416 (517)
Q Consensus 357 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-------------~l~~L~~L~l~~N~l~~~~p~ 416 (517)
+++|++++ ++ +..+++|+.|++++|++++. + .+. .+..|+.+++++|+++|.+|.
T Consensus 325 L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~l-~-~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 325 LNNTELTE-LD--VSHNTKLKSLSCVNAHIQDF-S-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp CTTCCCSC-CC--CTTCTTCSEEECCSSCCCBC-T-TGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCT
T ss_pred CCCCcccc-cc--cccCCcCcEEECCCCCCCCc-c-ccccccccCCcEEecceeeecCccccccCcEEEEcCh
Confidence 99999997 43 89999999999999999862 2 111 123456666777777776663
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.9e-29 Score=246.73 Aligned_cols=232 Identities=18% Similarity=0.228 Sum_probs=186.8
Q ss_pred cCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCcccc
Q 036049 85 KLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLE 164 (517)
Q Consensus 85 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~ 164 (517)
..+++++|+|++|.++. +|+.++.+. +|++|+|++|.+. .+|..|+++++|++|+|++|.++ .+|..|+++++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~--lp~~l~~l~-~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQ--FPDQAFRLS-HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLR 153 (328)
T ss_dssp TSTTCCEEEEESSCCSS--CCSCGGGGT-TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCC
T ss_pred cccceeEEEccCCCchh--cChhhhhCC-CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCC
Confidence 35778888888888875 788788776 8888888888885 78888888888888888888888 6788888888888
Q ss_pred EEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCC
Q 036049 165 AIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNE 244 (517)
Q Consensus 165 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~ 244 (517)
+|++++|.+.+.+|..+... .++..+.. +++|++|++++|.++.++.
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~---------------------~~~~~~~~--l~~L~~L~L~~n~l~~lp~---------- 200 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLAST---------------------DASGEHQG--LVNLQSLRLEWTGIRSLPA---------- 200 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEE---------------------C-CCCEEE--STTCCEEEEEEECCCCCCG----------
T ss_pred EEECCCCCCccccChhHhhc---------------------cchhhhcc--CCCCCEEECcCCCcCcchH----------
Confidence 88888887777777654431 11112223 8999999999999986533
Q ss_pred CCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCc
Q 036049 245 EPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKI 324 (517)
Q Consensus 245 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (517)
.+..+++|++|++++|.++ .+|
T Consensus 201 ---~l~~l~~L~~L~L~~N~l~-~l~------------------------------------------------------ 222 (328)
T 4fcg_A 201 ---SIANLQNLKSLKIRNSPLS-ALG------------------------------------------------------ 222 (328)
T ss_dssp ---GGGGCTTCCEEEEESSCCC-CCC------------------------------------------------------
T ss_pred ---hhcCCCCCCEEEccCCCCC-cCc------------------------------------------------------
Confidence 3578899999999999987 333
Q ss_pred hhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEe
Q 036049 325 PDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFN 404 (517)
Q Consensus 325 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 404 (517)
..+..+++|++|+|++|.+.+.+|..+..+++|++|+|++|.+.+.+|..+..+++|++|+
T Consensus 223 -------------------~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 283 (328)
T 4fcg_A 223 -------------------PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283 (328)
T ss_dssp -------------------GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEE
T ss_pred -------------------hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEe
Confidence 2356678999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccccCCCC-CcCCccCCCcccCC
Q 036049 405 VSDNYLTGLIPQG-KQFATFDNTSFDGN 431 (517)
Q Consensus 405 l~~N~l~~~~p~~-~~~~~l~~~~~~~N 431 (517)
+++|++.+.+|+. ..+..+..+.+..|
T Consensus 284 L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 284 LRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCCCchhhccHHHhhccCceEEeCCHH
Confidence 9999999999974 34555555555444
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=9.5e-30 Score=246.85 Aligned_cols=254 Identities=24% Similarity=0.302 Sum_probs=169.0
Q ss_pred CcccceeecCCCCCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcc
Q 036049 48 CCSWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWG 127 (517)
Q Consensus 48 ~C~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 127 (517)
.|.|.++.|... +++ .+|. .+ .++|++|++++|.++. +|..++...++|++|++++|.+..
T Consensus 6 ~C~~~~l~c~~~------------~l~-~ip~--~~--~~~l~~L~L~~n~l~~--i~~~~~~~l~~L~~L~L~~n~l~~ 66 (306)
T 2z66_A 6 SCSGTEIRCNSK------------GLT-SVPT--GI--PSSATRLELESNKLQS--LPHGVFDKLTQLTKLSLSSNGLSF 66 (306)
T ss_dssp EEETTEEECCSS------------CCS-SCCS--CC--CTTCCEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCCCE
T ss_pred eeCCCEEEcCCC------------Ccc-cCCC--CC--CCCCCEEECCCCccCc--cCHhHhhccccCCEEECCCCccCc
Confidence 388988888642 333 2222 22 2577788888887765 665543333378888888877752
Q ss_pred c--CCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCc-hhhhcCCcccccccccccCcceeccc
Q 036049 128 K--VPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQIT-SSLRNLTELVVLDMAQNSYGGTMEIE 204 (517)
Q Consensus 128 ~--~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~N~l~~~~~~~ 204 (517)
. .|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+
T Consensus 67 ~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~----- 140 (306)
T 2z66_A 67 KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV----- 140 (306)
T ss_dssp EEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE-----
T ss_pred ccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc-----
Confidence 2 2455666778888888888777 466667778888888888888775444 467777888888888887762
Q ss_pred cccccccccccCCCCCeEeccCCcccc-cCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhccccccee
Q 036049 205 GKVHKWLLDPNMQNLNALNLSHNLLTG-FDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIV 283 (517)
Q Consensus 205 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L 283 (517)
..+..+.. +++|++|++++|.+++ ..+. .+..+++|++|++++|.+++..|
T Consensus 141 -~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~------------~~~~l~~L~~L~Ls~n~l~~~~~------------- 192 (306)
T 2z66_A 141 -AFNGIFNG--LSSLEVLKMAGNSFQENFLPD------------IFTELRNLTFLDLSQCQLEQLSP------------- 192 (306)
T ss_dssp -CSTTTTTT--CTTCCEEECTTCEEGGGEECS------------CCTTCTTCCEEECTTSCCCEECT-------------
T ss_pred -cchhhccc--CcCCCEEECCCCccccccchh------------HHhhCcCCCEEECCCCCcCCcCH-------------
Confidence 33444444 7788888888888775 2221 34677888888888888763222
Q ss_pred ccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCcccc
Q 036049 284 NASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQ 363 (517)
Q Consensus 284 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 363 (517)
..+..+++|+.|+|++|+++
T Consensus 193 ------------------------------------------------------------~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 193 ------------------------------------------------------------TAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp ------------------------------------------------------------TTTTTCTTCCEEECTTSCCS
T ss_pred ------------------------------------------------------------HHhcCCCCCCEEECCCCccC
Confidence 23445566777777777776
Q ss_pred ccCChhccCCCCCCeeeCCCCcccccCccccccCC-CCCEEeccCCcccccC
Q 036049 364 GHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELT-FLAFFNVSDNYLTGLI 414 (517)
Q Consensus 364 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~l~~N~l~~~~ 414 (517)
+..+..+..+++|++|+|++|++++..|..+..++ +|++|++++|++++..
T Consensus 213 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 55555666777777777777777766666666663 6777777777776553
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=6e-30 Score=253.46 Aligned_cols=279 Identities=18% Similarity=0.185 Sum_probs=223.4
Q ss_pred cCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCcccc
Q 036049 85 KLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLE 164 (517)
Q Consensus 85 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~ 164 (517)
.++.....+++++.++. +|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|+
T Consensus 29 ~C~~~~~c~~~~~~l~~--iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNS--IPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp EECTTSEEECCSTTCSS--CCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCeEeeCCCCCccc--cccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 34455568899999987 787654 3899999999999776667899999999999999999988888999999999
Q ss_pred EEEcccccccccCchhhhcCCcccccccccccCcceecccccccc--ccccccCCCCCeEeccCC-cccccCCCCCCCCC
Q 036049 165 AIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHK--WLLDPNMQNLNALNLSHN-LLTGFDQHLVLLPG 241 (517)
Q Consensus 165 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~--~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~ll~~ 241 (517)
+|++++|.+++..+..|.++++|++|++++|+++ .+|. .+.. +++|++|++++| .+++.++.
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------~l~~~~~~~~--l~~L~~L~l~~n~~~~~~~~~------ 168 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-------TLGETSLFSH--LTKLQILRVGNMDTFTKIQRK------ 168 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-------SSCSSCSCTT--CTTCCEEEEEESSSCCEECTT------
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-------ccCchhhhcc--CCCCcEEECCCCccccccCHH------
Confidence 9999999999766666999999999999999997 5555 4445 999999999999 46665433
Q ss_pred CCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccC
Q 036049 242 NNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAY 321 (517)
Q Consensus 242 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (517)
.+.++++|++|++++|.+++..|. .+..+
T Consensus 169 ------~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l-------------------------------------------- 197 (353)
T 2z80_A 169 ------DFAGLTFLEELEIDASDLQSYEPK-SLKSI-------------------------------------------- 197 (353)
T ss_dssp ------TTTTCCEEEEEEEEETTCCEECTT-TTTTC--------------------------------------------
T ss_pred ------HccCCCCCCEEECCCCCcCccCHH-HHhcc--------------------------------------------
Confidence 457889999999999999854443 34333
Q ss_pred CCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhcc---CCCCCCeeeCCCCcccc----cCcccc
Q 036049 322 NKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLG---NLTNLESLDLSNNKFSG----RIPQQL 394 (517)
Q Consensus 322 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~----~~p~~l 394 (517)
++|++|++++|.+....+..+..+++|+.|++++|.+++..+..+. ..+.++.++|+++.+.+ .+|..+
T Consensus 198 ----~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l 273 (353)
T 2z80_A 198 ----QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL 273 (353)
T ss_dssp ----SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHH
T ss_pred ----ccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHH
Confidence 3455566666776543333455689999999999999976554433 46778899999998876 477889
Q ss_pred ccCCCCCEEeccCCcccccCCCC-CcCCccCCCcccCCCCCCCCC
Q 036049 395 VELTFLAFFNVSDNYLTGLIPQG-KQFATFDNTSFDGNSGLCGKP 438 (517)
Q Consensus 395 ~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~Np~~c~~~ 438 (517)
..+++|++|++++|+++..++.. ..+..+..+++++||+.|+|+
T Consensus 274 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 274 NQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 99999999999999999655543 578889999999999999875
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=9e-29 Score=239.96 Aligned_cols=113 Identities=21% Similarity=0.293 Sum_probs=94.5
Q ss_pred hhhhhhCCCCCCcc-cCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEec
Q 036049 327 ILAGIILSNKSFDG-AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNV 405 (517)
Q Consensus 327 ~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 405 (517)
.|+.|++++|.+.+ ..|..+..+++|+.|+|++|++++..|..+..+++|++|+|++|++++..+..+..+++|++|++
T Consensus 151 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 230 (306)
T 2z66_A 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230 (306)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeEC
Confidence 34444455555544 45667888999999999999999888999999999999999999999877778999999999999
Q ss_pred cCCcccccCCCC-CcC-CccCCCcccCCCCCCCCCC
Q 036049 406 SDNYLTGLIPQG-KQF-ATFDNTSFDGNSGLCGKPL 439 (517)
Q Consensus 406 ~~N~l~~~~p~~-~~~-~~l~~~~~~~Np~~c~~~~ 439 (517)
++|++++..|.. ..+ ..+..+++++|++.|+|+.
T Consensus 231 ~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp TTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred CCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 999999988865 344 4788999999999998753
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=2.9e-29 Score=243.92 Aligned_cols=158 Identities=22% Similarity=0.345 Sum_probs=135.1
Q ss_pred CcEEEEEcCC-CCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCC
Q 036049 61 GHVVKLNLSH-SCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRL 139 (517)
Q Consensus 61 ~~l~~L~Ls~-n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 139 (517)
.+++.|+|++ |.+.+.+|. .+.++++|++|+|++|.+++. +|..+..+. +|++|++++|.+.+.+|..|..+++|
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L 151 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPP--AIAKLTQLHYLYITHTNVSGA-IPDFLSQIK-TLVTLDFSYNALSGTLPPSISSLPNL 151 (313)
T ss_dssp TTCSEEEEEEETTEESCCCG--GGGGCTTCSEEEEEEECCEEE-CCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred CCCCeeeCCCCCcccccCCh--hHhcCCCCCEEECcCCeeCCc-CCHHHhCCC-CCCEEeCCCCccCCcCChHHhcCCCC
Confidence 5799999995 999988887 899999999999999999864 788888887 99999999999988999999999999
Q ss_pred cEEEccCCcccccccccccCCc-cccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCC
Q 036049 140 QFLYLGFNNFSGDLLGSIGNLR-SLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQN 218 (517)
Q Consensus 140 ~~L~Ls~n~i~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~ 218 (517)
++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..++ |++|++++|.+++ .+|..+.. +++
T Consensus 152 ~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~------~~~~~~~~--l~~ 222 (313)
T 1ogq_A 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG------DASVLFGS--DKN 222 (313)
T ss_dssp CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE------CCGGGCCT--TSC
T ss_pred CeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC------cCCHHHhc--CCC
Confidence 9999999999999999999998 999999999999999999999887 9999998887763 34444443 555
Q ss_pred CCeEeccCCcccc
Q 036049 219 LNALNLSHNLLTG 231 (517)
Q Consensus 219 L~~L~Ls~n~l~~ 231 (517)
|++|++++|.+++
T Consensus 223 L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 223 TQKIHLAKNSLAF 235 (313)
T ss_dssp CSEEECCSSEECC
T ss_pred CCEEECCCCceee
Confidence 5555555555443
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=5.5e-29 Score=261.80 Aligned_cols=286 Identities=20% Similarity=0.220 Sum_probs=227.4
Q ss_pred CCCCCCCCCCCCCCcccceeec------CCCCCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhh
Q 036049 35 TMASWKPEEGNVDCCSWDGVHC------NKNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEI 108 (517)
Q Consensus 35 ~~~~w~~~~~~~~~C~w~gv~c------~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 108 (517)
....|.. ..+||.|+|..| ......++.|++++|.++ .+|. .+. ++|++|++++|.++. +|.
T Consensus 11 ~w~~W~~---~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~--~l~--~~L~~L~L~~N~l~~--lp~-- 78 (622)
T 3g06_A 11 VWSAWRR---AAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPD--CLP--AHITTLVIPDNNLTS--LPA-- 78 (622)
T ss_dssp HHHHHHH---TCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCS--CCC--TTCSEEEECSCCCSC--CCC--
T ss_pred HHHHHHh---cCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccCh--hhC--CCCcEEEecCCCCCC--CCC--
Confidence 3456765 568899976432 111235899999999998 4554 443 799999999999986 776
Q ss_pred hhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCccc
Q 036049 109 INLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELV 188 (517)
Q Consensus 109 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 188 (517)
.+. +|++|+|++|.++ .+|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|.. +++|+
T Consensus 79 -~l~-~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~ 144 (622)
T 3g06_A 79 -LPP-ELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQ 144 (622)
T ss_dssp -CCT-TCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCC
T ss_pred -cCC-CCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCC
Confidence 334 9999999999995 5665 77999999999999995 555 56899999999999984 5553 58999
Q ss_pred ccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCC
Q 036049 189 VLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGK 268 (517)
Q Consensus 189 ~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 268 (517)
+|++++|.++ .+|.. +++|+.|++++|.+++++ ..+++|+.|++++|.++ .
T Consensus 145 ~L~Ls~N~l~-------~l~~~-----~~~L~~L~L~~N~l~~l~----------------~~~~~L~~L~Ls~N~l~-~ 195 (622)
T 3g06_A 145 ELSVSDNQLA-------SLPAL-----PSELCKLWAYNNQLTSLP----------------MLPSGLQELSVSDNQLA-S 195 (622)
T ss_dssp EEECCSSCCS-------CCCCC-----CTTCCEEECCSSCCSCCC----------------CCCTTCCEEECCSSCCS-C
T ss_pred EEECcCCcCC-------CcCCc-----cCCCCEEECCCCCCCCCc----------------ccCCCCcEEECCCCCCC-C
Confidence 9999999997 44432 678999999999999864 23689999999999998 5
Q ss_pred CChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccC
Q 036049 269 LPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISN 348 (517)
Q Consensus 269 ~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~ 348 (517)
+|.. .++|+.|+++++.... +...+++|+.|++++|.+++ +| ..
T Consensus 196 l~~~----~~~L~~L~L~~N~l~~----------------------------l~~~~~~L~~L~Ls~N~L~~-lp---~~ 239 (622)
T 3g06_A 196 LPTL----PSELYKLWAYNNRLTS----------------------------LPALPSGLKELIVSGNRLTS-LP---VL 239 (622)
T ss_dssp CCCC----CTTCCEEECCSSCCSS----------------------------CCCCCTTCCEEECCSSCCSC-CC---CC
T ss_pred CCCc----cchhhEEECcCCcccc----------------------------cCCCCCCCCEEEccCCccCc-CC---CC
Confidence 6642 4677788777632111 11124779999999999995 55 45
Q ss_pred CCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCCC
Q 036049 349 LKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQ 416 (517)
Q Consensus 349 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~ 416 (517)
+++|+.|+|++|+|+ .+|. .+++|+.|+|++|+|+ .+|..+..+++|+.|++++|++++.+|.
T Consensus 240 l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 240 PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 689999999999999 5665 5789999999999999 7899999999999999999999988775
No 54
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=4.9e-28 Score=247.03 Aligned_cols=301 Identities=22% Similarity=0.296 Sum_probs=180.4
Q ss_pred CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCc
Q 036049 61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQ 140 (517)
Q Consensus 61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 140 (517)
.+++.|++++|.+++. +. + .++|++|++++|.+++ +| .+..+. +|++|++++|.+.+ +|..+ .+|+
T Consensus 111 ~~L~~L~l~~n~l~~l-~~---~--~~~L~~L~L~~n~l~~--lp-~~~~l~-~L~~L~l~~N~l~~-lp~~~---~~L~ 176 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKAL-SD---L--PPLLEYLGVSNNQLEK--LP-ELQNSS-FLKIIDVDNNSLKK-LPDLP---PSLE 176 (454)
T ss_dssp TTCCEEECCSSCCSCC-CS---C--CTTCCEEECCSSCCSS--CC-CCTTCT-TCCEEECCSSCCSC-CCCCC---TTCC
T ss_pred CCCcEEECCCCccCcc-cC---C--CCCCCEEECcCCCCCC--Cc-ccCCCC-CCCEEECCCCcCcc-cCCCc---cccc
Confidence 4677777777776542 11 1 1689999999999986 67 466666 99999999999854 66543 5899
Q ss_pred EEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCC
Q 036049 141 FLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLN 220 (517)
Q Consensus 141 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~ 220 (517)
+|++++|.+++ +| .|+++++|++|++++|.+++ +|.. .++|++|++++|.++ .+|. +.. +++|+
T Consensus 177 ~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-------~lp~-~~~--l~~L~ 240 (454)
T 1jl5_A 177 FIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-------ELPE-LQN--LPFLT 240 (454)
T ss_dssp EEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-------SCCC-CTT--CTTCC
T ss_pred EEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-------cccc-cCC--CCCCC
Confidence 99999999986 56 68999999999999999885 4443 258999999999887 5563 455 88999
Q ss_pred eEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcc
Q 036049 221 ALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGK 300 (517)
Q Consensus 221 ~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 300 (517)
+|++++|++++++. .+++|++|++++|+++ .+|.. .++|+.|+++++.... .. . .+
T Consensus 241 ~L~l~~N~l~~l~~----------------~~~~L~~L~l~~N~l~-~l~~~----~~~L~~L~ls~N~l~~-l~-~-~~ 296 (454)
T 1jl5_A 241 TIYADNNLLKTLPD----------------LPPSLEALNVRDNYLT-DLPEL----PQSLTFLDVSENIFSG-LS-E-LP 296 (454)
T ss_dssp EEECCSSCCSSCCS----------------CCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSE-ES-C-CC
T ss_pred EEECCCCcCCcccc----------------cccccCEEECCCCccc-ccCcc----cCcCCEEECcCCccCc-cc-C-cC
Confidence 99999999887532 2368888999988887 46642 3677888877643221 00 0 00
Q ss_pred cchhhhccceeeeecCccc-cCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCee
Q 036049 301 LLMTTYDYLLTMNIKGRMM-AYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESL 379 (517)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 379 (517)
..+..+.+.+... .....+..|+.|++++|++++ +|.. +++|+.|++++|+++ .+|. .+++|++|
T Consensus 297 ------~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L 362 (454)
T 1jl5_A 297 ------PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQL 362 (454)
T ss_dssp ------TTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEE
T ss_pred ------CcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEE
Confidence 0111111111100 011223567777777777764 4443 466777777777776 4554 35677777
Q ss_pred eCCCCcccc--cCccccccC-------------CCCCEEeccCCcccc--cCCCCCcCCccCCCcccCCCCC
Q 036049 380 DLSNNKFSG--RIPQQLVEL-------------TFLAFFNVSDNYLTG--LIPQGKQFATFDNTSFDGNSGL 434 (517)
Q Consensus 380 ~Ls~N~l~~--~~p~~l~~l-------------~~L~~L~l~~N~l~~--~~p~~~~~~~l~~~~~~~Np~~ 434 (517)
++++|++++ .+|..+..+ ++|++|++++|++++ .+|. ++..+.+.+|...
T Consensus 363 ~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~-----sl~~L~~~~~~~~ 429 (454)
T 1jl5_A 363 HVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE-----SVEDLRMNSERVV 429 (454)
T ss_dssp ECCSSCCSSCCCCCTTCCEEECCC------------------------------------------------
T ss_pred ECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh-----hHhheeCcCcccC
Confidence 777777776 566666655 667777777777775 4442 2344445554433
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.5e-28 Score=235.85 Aligned_cols=133 Identities=17% Similarity=0.136 Sum_probs=62.0
Q ss_pred CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEccccc-ccccCchhhhcCCccccccc
Q 036049 114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCN-FSGQITSSLRNLTELVVLDM 192 (517)
Q Consensus 114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~l 192 (517)
+|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|..+++|++|++++|. +....|..|..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 44444444444443333444444555555555555544444444455555555555554 44333444444444444444
Q ss_pred ccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCC
Q 036049 193 AQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFT 266 (517)
Q Consensus 193 ~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (517)
++|.+++ ..+..+.. +++|++|++++|.+++.++. .+..+++|++|++++|+++
T Consensus 113 ~~n~l~~------~~~~~~~~--l~~L~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 113 DRCGLQE------LGPGLFRG--LAALQYLYLQDNALQALPDD------------TFRDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp TTSCCCC------CCTTTTTT--CTTCCEEECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCC
T ss_pred CCCcCCE------ECHhHhhC--CcCCCEEECCCCcccccCHh------------HhccCCCccEEECCCCccc
Confidence 4444431 11222222 45555555555555443322 2344556666666666554
No 56
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=6.4e-31 Score=255.70 Aligned_cols=254 Identities=22% Similarity=0.208 Sum_probs=164.4
Q ss_pred cccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCC-cccCCccCC-------CCCCCcEEEccCCccccccc
Q 036049 83 LYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGF-WGKVPHSIG-------NFTRLQFLYLGFNNFSGDLL 154 (517)
Q Consensus 83 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~p~~~~-------~l~~L~~L~Ls~n~i~~~~p 154 (517)
++..++|++|++++|.+ . +|..+... |++|++++|.+ ...+|..+. ++++|++|++++|.+++.+|
T Consensus 39 ~~~~~~L~~l~l~~n~l-~--~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-A--DLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEECTTHHHHCCTT-C--CCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EccCCCceeEeeccccc-c--cHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 34455667777777777 2 66655543 66667777766 234554444 56777777777777776666
Q ss_pred ccc--cCCccccEEEcccccccccCchhhhcC-----CcccccccccccCcceeccccccccccccccCCCCCeEeccCC
Q 036049 155 GSI--GNLRSLEAIYMSKCNFSGQITSSLRNL-----TELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHN 227 (517)
Q Consensus 155 ~~~--~~l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n 227 (517)
..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|++++ ..+..+.. +++|++|++++|
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~------~~~~~~~~--l~~L~~L~Ls~N 183 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLN------FSCEQVRV--FPALSTLDLSDN 183 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCC------CCTTTCCC--CSSCCEEECCSC
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCcc------chHHHhcc--CCCCCEEECCCC
Confidence 665 6777777777777777755 6666665 677777777777652 22244444 777777777777
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCC--CCChhhhhcccccceeccCcccccccccCCCcccchhh
Q 036049 228 LLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTG--KLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTT 305 (517)
Q Consensus 228 ~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 305 (517)
++.+..+. +....+..+++|++|++++|++++ .++...+..
T Consensus 184 ~l~~~~~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~----------------------------- 226 (312)
T 1wwl_A 184 PELGERGL--------ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA----------------------------- 226 (312)
T ss_dssp TTCHHHHH--------HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHT-----------------------------
T ss_pred CcCcchHH--------HHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhc-----------------------------
Confidence 76542100 000012556777777777777762 111111111
Q ss_pred hccceeeeecCccccCCCchhhhhhhhCCCCCCcccCc-ccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCC
Q 036049 306 YDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIP-ASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNN 384 (517)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 384 (517)
.+.|+.|++++|.+++..| ..+..+++|++|+|++|+++ .+|..+. ++|++|+|++|
T Consensus 227 -------------------l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N 284 (312)
T 1wwl_A 227 -------------------RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYN 284 (312)
T ss_dssp -------------------TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSS
T ss_pred -------------------CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCC
Confidence 2345556666666665553 34556788999999999988 7777665 78999999999
Q ss_pred cccccCccccccCCCCCEEeccCCcccc
Q 036049 385 KFSGRIPQQLVELTFLAFFNVSDNYLTG 412 (517)
Q Consensus 385 ~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 412 (517)
+|++. |. +..+++|++|++++|++++
T Consensus 285 ~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 285 RLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 99855 55 8888899999999998875
No 57
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=1.9e-27 Score=242.67 Aligned_cols=301 Identities=20% Similarity=0.223 Sum_probs=178.1
Q ss_pred CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCc
Q 036049 61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQ 140 (517)
Q Consensus 61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 140 (517)
.+++.|++++|.+++ +|. . +++|++|++++|.+++ ++. ..++|++|++++|.+.+ +| .|+++++|+
T Consensus 91 ~~L~~L~l~~n~l~~-lp~--~---~~~L~~L~l~~n~l~~--l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~ 156 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPE--L---PQSLKSLLVDNNNLKA--LSD----LPPLLEYLGVSNNQLEK-LP-ELQNSSFLK 156 (454)
T ss_dssp TTCSEEECCSSCCSS-CCC--C---CTTCCEEECCSSCCSC--CCS----CCTTCCEEECCSSCCSS-CC-CCTTCTTCC
T ss_pred CCCCEEEccCCcCCc-ccc--c---cCCCcEEECCCCccCc--ccC----CCCCCCEEECcCCCCCC-Cc-ccCCCCCCC
Confidence 456777777777665 332 2 3667777777777765 332 11377777777777754 56 477777777
Q ss_pred EEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCC
Q 036049 141 FLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLN 220 (517)
Q Consensus 141 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~ 220 (517)
+|++++|++++ +|..+ .+|++|++++|.+++ +| .+.++++|++|++++|.++ .+|.. .++|+
T Consensus 157 ~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~-------~l~~~-----~~~L~ 218 (454)
T 1jl5_A 157 IIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-------KLPDL-----PLSLE 218 (454)
T ss_dssp EEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-------SCCCC-----CTTCC
T ss_pred EEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC-------cCCCC-----cCccc
Confidence 77777777774 45433 467777777777774 44 4677777777777777766 33332 34677
Q ss_pred eEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcc
Q 036049 221 ALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGK 300 (517)
Q Consensus 221 ~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 300 (517)
+|++++|.++.++ .+..+++|++|++++|+++ .+|. ..++|+.|+++++.... ++..
T Consensus 219 ~L~l~~n~l~~lp--------------~~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~N~l~~--l~~~-- 275 (454)
T 1jl5_A 219 SIVAGNNILEELP--------------ELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTD--LPEL-- 275 (454)
T ss_dssp EEECCSSCCSSCC--------------CCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCSC--CCCC--
T ss_pred EEECcCCcCCccc--------------ccCCCCCCCEEECCCCcCC-cccc----cccccCEEECCCCcccc--cCcc--
Confidence 7777777776442 1367788888888888887 4553 23677777777643221 0000
Q ss_pred cchhhhccceeeeecCccc-cCCCchhhhhhhhCCCCCCcccCcccccCC-CCCCeEeCcCccccccCChhccCCCCCCe
Q 036049 301 LLMTTYDYLLTMNIKGRMM-AYNKIPDILAGIILSNKSFDGAIPASISNL-KGLQVLNLHNNNLQGHIPSCLGNLTNLES 378 (517)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 378 (517)
...+..+.+.+... .....++.|+.|++++|.+++. + .+ ++|+.|++++|++++ +|.. +++|++
T Consensus 276 -----~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~ 341 (454)
T 1jl5_A 276 -----PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLER 341 (454)
T ss_dssp -----CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCE
T ss_pred -----cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCE
Confidence 01111122211111 1112346777778888777742 2 22 478888888888874 5543 478888
Q ss_pred eeCCCCcccccCccccccCCCCCEEeccCCcccc--cCCCC-CcC-------------CccCCCcccCCCCC
Q 036049 379 LDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTG--LIPQG-KQF-------------ATFDNTSFDGNSGL 434 (517)
Q Consensus 379 L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~--~~p~~-~~~-------------~~l~~~~~~~Np~~ 434 (517)
|++++|+++ .+|. .+++|++|++++|++++ .+|.. ..+ ..++.+++++|+..
T Consensus 342 L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 342 LIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp EECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred EECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 888888887 4665 46788888888888887 45543 122 45666666666654
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.2e-27 Score=244.97 Aligned_cols=246 Identities=19% Similarity=0.181 Sum_probs=195.6
Q ss_pred EEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEc
Q 036049 65 KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYL 144 (517)
Q Consensus 65 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 144 (517)
.++.++.+++. +|. .+ .++|++|+|++|.++.. .+..+..+. +|++|+|++|.+.+..+..|.++++|++|+|
T Consensus 58 ~v~c~~~~l~~-iP~--~~--~~~l~~L~L~~n~i~~~-~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 58 KVVCTRRGLSE-VPQ--GI--PSNTRYLNLMENNIQMI-QADTFRHLH-HLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp EEECCSSCCSS-CCS--CC--CTTCSEEECCSSCCCEE-CTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred EEEECCCCcCc-cCC--CC--CCCccEEECcCCcCceE-CHHHcCCCC-CCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 44555556653 333 23 26889999999999873 345555666 9999999999998888888999999999999
Q ss_pred cCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccc-cccccCCCCCeEe
Q 036049 145 GFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKW-LLDPNMQNLNALN 223 (517)
Q Consensus 145 s~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~-~~~~~l~~L~~L~ 223 (517)
++|.++...+..|..+++|++|+|++|.++...+..|.++++|++|++++|...+ .++.. +.. +++|++|+
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~------~i~~~~~~~--l~~L~~L~ 202 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE------YISEGAFEG--LFNLKYLN 202 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC------EECTTTTTT--CTTCCEEE
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcc------ccChhhccC--CCCCCEEE
Confidence 9999997777778999999999999999997777789999999999999854332 44443 334 89999999
Q ss_pred ccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccch
Q 036049 224 LSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLM 303 (517)
Q Consensus 224 Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 303 (517)
+++|.+++++. +..+++|++|++++|.+++ ++...|..
T Consensus 203 L~~n~l~~~~~--------------~~~l~~L~~L~Ls~N~l~~-~~~~~~~~--------------------------- 240 (452)
T 3zyi_A 203 LGMCNIKDMPN--------------LTPLVGLEELEMSGNHFPE-IRPGSFHG--------------------------- 240 (452)
T ss_dssp CTTSCCSSCCC--------------CTTCTTCCEEECTTSCCSE-ECGGGGTT---------------------------
T ss_pred CCCCccccccc--------------ccccccccEEECcCCcCcc-cCcccccC---------------------------
Confidence 99999987632 3678899999999999984 43333433
Q ss_pred hhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCC
Q 036049 304 TTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN 383 (517)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 383 (517)
.++|+.|++++|.+++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++
T Consensus 241 ---------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 241 ---------------------LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp ---------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCS
T ss_pred ---------------------ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccC
Confidence 34566677888888888888899999999999999999977778889999999999999
Q ss_pred Ccccc
Q 036049 384 NKFSG 388 (517)
Q Consensus 384 N~l~~ 388 (517)
|.+.-
T Consensus 300 Np~~C 304 (452)
T 3zyi_A 300 NPWNC 304 (452)
T ss_dssp SCEEC
T ss_pred CCcCC
Confidence 98863
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.6e-27 Score=243.11 Aligned_cols=245 Identities=20% Similarity=0.186 Sum_probs=185.4
Q ss_pred EEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEc
Q 036049 65 KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYL 144 (517)
Q Consensus 65 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 144 (517)
.++.++..++. +|. .+ .+++++|+|++|+++.. .+..+..+. +|++|+|++|.+.+..+..|.++++|++|+|
T Consensus 47 ~v~c~~~~l~~-iP~--~~--~~~l~~L~L~~n~i~~~-~~~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 47 KVICVRKNLRE-VPD--GI--STNTRLLNLHENQIQII-KVNSFKHLR-HLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp EEECCSCCCSS-CCS--CC--CTTCSEEECCSCCCCEE-CTTTTSSCS-SCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred EEEeCCCCcCc-CCC--CC--CCCCcEEEccCCcCCee-CHHHhhCCC-CCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 45555666653 333 23 26788888888888763 234455555 8888888888887777778888888888888
Q ss_pred cCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccc-cccccCCCCCeEe
Q 036049 145 GFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKW-LLDPNMQNLNALN 223 (517)
Q Consensus 145 s~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~-~~~~~l~~L~~L~ 223 (517)
++|+++...+..|..+++|++|+|++|.++...+..|.++++|++|++++|...+ .++.. +.. +++|++|+
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~------~i~~~~~~~--l~~L~~L~ 191 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS------YISEGAFEG--LSNLRYLN 191 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC------EECTTTTTT--CSSCCEEE
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcc------eeCcchhhc--ccccCeec
Confidence 8888886666678888888888888888887777788888888888888854332 34442 333 88888899
Q ss_pred ccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccch
Q 036049 224 LSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLM 303 (517)
Q Consensus 224 Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 303 (517)
+++|.++.++. +..+++|++|+|++|++++ ++...|..
T Consensus 192 L~~n~l~~~~~--------------~~~l~~L~~L~Ls~N~l~~-~~~~~~~~--------------------------- 229 (440)
T 3zyj_A 192 LAMCNLREIPN--------------LTPLIKLDELDLSGNHLSA-IRPGSFQG--------------------------- 229 (440)
T ss_dssp CTTSCCSSCCC--------------CTTCSSCCEEECTTSCCCE-ECTTTTTT---------------------------
T ss_pred CCCCcCccccc--------------cCCCcccCEEECCCCccCc-cChhhhcc---------------------------
Confidence 98888886532 3677889999999998874 33333333
Q ss_pred hhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCC
Q 036049 304 TTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN 383 (517)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 383 (517)
.+.|+.|++++|.+++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++
T Consensus 230 ---------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 230 ---------------------LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288 (440)
T ss_dssp ---------------------CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCS
T ss_pred ---------------------CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCC
Confidence 34566677777888878888899999999999999999987778889999999999999
Q ss_pred Cccc
Q 036049 384 NKFS 387 (517)
Q Consensus 384 N~l~ 387 (517)
|.+.
T Consensus 289 Np~~ 292 (440)
T 3zyj_A 289 NPWN 292 (440)
T ss_dssp SCEE
T ss_pred CCcc
Confidence 9886
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=2.4e-29 Score=244.54 Aligned_cols=244 Identities=23% Similarity=0.255 Sum_probs=199.2
Q ss_pred CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCccc-cccccccc-------CCccccEEEcccccccccCchhh--hc
Q 036049 114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFS-GDLLGSIG-------NLRSLEAIYMSKCNFSGQITSSL--RN 183 (517)
Q Consensus 114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~-~~~p~~~~-------~l~~L~~L~L~~n~l~~~~p~~l--~~ 183 (517)
+|++|++++|.+ .+|..+... |++|++++|.+. ..+|..+. ++++|++|++++|.+++.+|..+ ..
T Consensus 44 ~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 44 SLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp ECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 899999999999 778777654 999999999994 45666665 79999999999999998888876 89
Q ss_pred CCcccccccccccCcceeccccccccccccccC-----CCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEE
Q 036049 184 LTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNM-----QNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRII 258 (517)
Q Consensus 184 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L 258 (517)
+++|++|++++|.+++ +|..+.. + ++|++|++++|++++.++. .+..+++|++|
T Consensus 120 l~~L~~L~Ls~N~l~~-------~~~~~~~--l~~~~~~~L~~L~L~~N~l~~~~~~------------~~~~l~~L~~L 178 (312)
T 1wwl_A 120 GPDLNILNLRNVSWAT-------RDAWLAE--LQQWLKPGLKVLSIAQAHSLNFSCE------------QVRVFPALSTL 178 (312)
T ss_dssp SCCCSEEEEESCBCSS-------SSSHHHH--HHTTCCTTCCEEEEESCSCCCCCTT------------TCCCCSSCCEE
T ss_pred CCCccEEEccCCCCcc-------hhHHHHH--HHHhhcCCCcEEEeeCCCCccchHH------------HhccCCCCCEE
Confidence 9999999999999983 3544444 4 8999999999999987644 46789999999
Q ss_pred EccCCcCCCCCC--hhh-hhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCC
Q 036049 259 DLSDNRFTGKLP--SKS-FLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSN 335 (517)
Q Consensus 259 ~Ls~N~l~~~~p--~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 335 (517)
++++|++.+.++ ... +.. .+.|++|++++
T Consensus 179 ~Ls~N~l~~~~~~~~~~~~~~------------------------------------------------l~~L~~L~L~~ 210 (312)
T 1wwl_A 179 DLSDNPELGERGLISALCPLK------------------------------------------------FPTLQVLALRN 210 (312)
T ss_dssp ECCSCTTCHHHHHHHHSCTTS------------------------------------------------CTTCCEEECTT
T ss_pred ECCCCCcCcchHHHHHHHhcc------------------------------------------------CCCCCEEECCC
Confidence 999999875422 110 111 45677788888
Q ss_pred CCCcc--cCc-ccccCCCCCCeEeCcCccccccCC-hhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCccc
Q 036049 336 KSFDG--AIP-ASISNLKGLQVLNLHNNNLQGHIP-SCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLT 411 (517)
Q Consensus 336 n~l~~--~~p-~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 411 (517)
|.+++ .++ ..+..+++|+.|+|++|++++..| ..+..+++|++|+|++|+|+ .+|..+. ++|++|++++|+|+
T Consensus 211 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~ 287 (312)
T 1wwl_A 211 AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLD 287 (312)
T ss_dssp SCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCC
T ss_pred CcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCC
Confidence 88873 222 345678999999999999997775 45677899999999999999 7887776 89999999999999
Q ss_pred ccCCCCCcCCccCCCcccCCCCC
Q 036049 412 GLIPQGKQFATFDNTSFDGNSGL 434 (517)
Q Consensus 412 ~~~p~~~~~~~l~~~~~~~Np~~ 434 (517)
+. |....+..++.+++++|++.
T Consensus 288 ~~-p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 288 RN-PSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp SC-CCTTTSCEEEEEECTTCTTT
T ss_pred CC-hhHhhCCCCCEEeccCCCCC
Confidence 88 66778889999999999864
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=3.6e-27 Score=226.27 Aligned_cols=251 Identities=20% Similarity=0.196 Sum_probs=194.2
Q ss_pred EEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCch-hhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEE
Q 036049 64 VKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQP-EIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFL 142 (517)
Q Consensus 64 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 142 (517)
+.++.++++++.. |. . -.++|++|++++|.++. +++ .+..+. +|++|++++|.+.+..|..|.++++|++|
T Consensus 14 ~~~~c~~~~l~~i-p~--~--~~~~l~~L~l~~n~i~~--~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 85 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PV--G--IPAASQRIFLHGNRISH--VPAASFRACR-NLTILWLHSNVLARIDAAAFTGLALLEQL 85 (285)
T ss_dssp CEEECCSSCCSSC-CT--T--CCTTCSEEECTTSCCCE--ECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred eEEEcCcCCcccC-Cc--C--CCCCceEEEeeCCcCCc--cCHHHcccCC-CCCEEECCCCccceeCHhhcCCccCCCEE
Confidence 5677788887643 33 2 25689999999999987 554 455555 99999999999988888999999999999
Q ss_pred EccCCc-ccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceecccccccc-ccccccCCCCC
Q 036049 143 YLGFNN-FSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHK-WLLDPNMQNLN 220 (517)
Q Consensus 143 ~Ls~n~-i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~~~~~~l~~L~ 220 (517)
++++|. +....|..|..+++|++|++++|.+++..|..|.++++|++|++++|.++ .++. .+.. +++|+
T Consensus 86 ~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------~~~~~~~~~--l~~L~ 156 (285)
T 1ozn_A 86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-------ALPDDTFRD--LGNLT 156 (285)
T ss_dssp ECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-------CCCTTTTTT--CTTCC
T ss_pred eCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-------ccCHhHhcc--CCCcc
Confidence 999997 88766888999999999999999999888888999999999999999987 4443 3445 89999
Q ss_pred eEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcc
Q 036049 221 ALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGK 300 (517)
Q Consensus 221 ~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 300 (517)
+|++++|+++++++. .+..+++|++|++++|.+++.
T Consensus 157 ~L~l~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~l~~~-------------------------------- 192 (285)
T 1ozn_A 157 HLFLHGNRISSVPER------------AFRGLHSLDRLLLHQNRVAHV-------------------------------- 192 (285)
T ss_dssp EEECCSSCCCEECTT------------TTTTCTTCCEEECCSSCCCEE--------------------------------
T ss_pred EEECCCCcccccCHH------------HhcCccccCEEECCCCccccc--------------------------------
Confidence 999999999987543 346788899999988888632
Q ss_pred cchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeee
Q 036049 301 LLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLD 380 (517)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 380 (517)
.|..+..+++|+.|++++|++++..+..+..+++|++|+
T Consensus 193 -----------------------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 231 (285)
T 1ozn_A 193 -----------------------------------------HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231 (285)
T ss_dssp -----------------------------------------CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEE
T ss_pred -----------------------------------------CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEe
Confidence 233455677888888888888866666788888888888
Q ss_pred CCCCcccccCccccccCCCCCEEeccCCcccccCCCC
Q 036049 381 LSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQG 417 (517)
Q Consensus 381 Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~ 417 (517)
|++|.+....+.. .-...++.+..+.+.+.+..|..
T Consensus 232 l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 232 LNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp CCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred ccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 8888887433211 11123444456677777777753
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.4e-28 Score=239.68 Aligned_cols=216 Identities=19% Similarity=0.169 Sum_probs=107.5
Q ss_pred CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccc
Q 036049 114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMA 193 (517)
Q Consensus 114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 193 (517)
+|++|++++|.+.+..|..|..+++|++|+|++|.+++..+ |..+++|++|++++|.+++.. ..++|++|+++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~ 107 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECC
Confidence 55555555555544444455555555555555555553332 555555555555555554221 22555555555
Q ss_pred cccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhh
Q 036049 194 QNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKS 273 (517)
Q Consensus 194 ~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 273 (517)
+|.+++ ++.. .+++|++|++++|++++..+. .+..+++|++|++++|.+++..+...
T Consensus 108 ~n~l~~-------~~~~----~~~~L~~L~l~~N~l~~~~~~------------~~~~l~~L~~L~Ls~N~l~~~~~~~~ 164 (317)
T 3o53_A 108 NNNISR-------VSCS----RGQGKKNIYLANNKITMLRDL------------DEGCRSRVQYLDLKLNEIDTVNFAEL 164 (317)
T ss_dssp SSCCSE-------EEEC----CCSSCEEEECCSSCCCSGGGB------------CTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred CCccCC-------cCcc----ccCCCCEEECCCCCCCCccch------------hhhccCCCCEEECCCCCCCcccHHHH
Confidence 555542 1111 144566666666666554332 23445566666666666653222221
Q ss_pred hhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCC
Q 036049 274 FLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQ 353 (517)
Q Consensus 274 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 353 (517)
+..+ +.|+.|++++|.+++. +. ...+++|+
T Consensus 165 ~~~l------------------------------------------------~~L~~L~L~~N~l~~~-~~-~~~l~~L~ 194 (317)
T 3o53_A 165 AASS------------------------------------------------DTLEHLNLQYNFIYDV-KG-QVVFAKLK 194 (317)
T ss_dssp GGGT------------------------------------------------TTCCEEECTTSCCCEE-EC-CCCCTTCC
T ss_pred hhcc------------------------------------------------CcCCEEECCCCcCccc-cc-ccccccCC
Confidence 1122 2333444444444432 11 12355566
Q ss_pred eEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCccc
Q 036049 354 VLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLT 411 (517)
Q Consensus 354 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 411 (517)
+|+|++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|+++
T Consensus 195 ~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 195 TLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp EEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred EEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 66666666553 3333555556666666666555 34555555556666666666555
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2.7e-27 Score=243.82 Aligned_cols=254 Identities=19% Similarity=0.176 Sum_probs=181.8
Q ss_pred Cchhhhhcc---cCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchh
Q 036049 104 IQPEIINLS---CSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSS 180 (517)
Q Consensus 104 ~~~~~~~~~---~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 180 (517)
+|..+..+. ++|++|+|++|.+.+..|..|+.+++|++|+|++|.+++..| |..+++|++|+|++|.+++..+
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-- 97 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-- 97 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE--
T ss_pred hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC--
Confidence 455554433 278888888888877667788888888888888888876554 7888888888888888874332
Q ss_pred hhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEc
Q 036049 181 LRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDL 260 (517)
Q Consensus 181 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~L 260 (517)
.++|++|++++|.+++ ++.. . +++|++|++++|.+++..+. .+..+++|++|++
T Consensus 98 ---~~~L~~L~L~~N~l~~-------~~~~--~--l~~L~~L~L~~N~l~~~~~~------------~~~~l~~L~~L~L 151 (487)
T 3oja_A 98 ---GPSIETLHAANNNISR-------VSCS--R--GQGKKNIYLANNKITMLRDL------------DEGCRSRVQYLDL 151 (487)
T ss_dssp ---CTTCCEEECCSSCCCC-------EEEC--C--CSSCEEEECCSSCCCSGGGB------------CGGGGSSEEEEEC
T ss_pred ---CCCcCEEECcCCcCCC-------CCcc--c--cCCCCEEECCCCCCCCCCch------------hhcCCCCCCEEEC
Confidence 3788888888888773 2221 1 67788888888888876543 3466788888888
Q ss_pred cCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcc
Q 036049 261 SDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDG 340 (517)
Q Consensus 261 s~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 340 (517)
++|.+++..|...... ++.|+.|+|++|.+++
T Consensus 152 s~N~l~~~~~~~l~~~------------------------------------------------l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 152 KLNEIDTVNFAELAAS------------------------------------------------SDTLEHLNLQYNFIYD 183 (487)
T ss_dssp TTSCCCEEEGGGGGGG------------------------------------------------TTTCCEEECTTSCCCE
T ss_pred CCCCCCCcChHHHhhh------------------------------------------------CCcccEEecCCCcccc
Confidence 8888886555432222 3456666777777775
Q ss_pred cCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCccc-ccCCC-CC
Q 036049 341 AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLT-GLIPQ-GK 418 (517)
Q Consensus 341 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~-~~~p~-~~ 418 (517)
. | ....+++|+.|+|++|.+++. |..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|+++ +.+|. ..
T Consensus 184 ~-~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 184 V-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp E-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred c-c-ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 5 2 234588999999999999854 4458889999999999999984 6777888899999999999988 33332 12
Q ss_pred cCCccCCCccc-------CCCCCCCCCC
Q 036049 419 QFATFDNTSFD-------GNSGLCGKPL 439 (517)
Q Consensus 419 ~~~~l~~~~~~-------~Np~~c~~~~ 439 (517)
.+..+..+++. +|++.|.++.
T Consensus 260 ~l~~L~~l~~~~~~~~~~~~~~~c~~~~ 287 (487)
T 3oja_A 260 KNQRVQTVAKQTVKKLTGQNEEECTVPT 287 (487)
T ss_dssp TCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred hCCCCcEEeccccccccCCCcccccCCc
Confidence 34444444444 7888887653
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.7e-27 Score=231.98 Aligned_cols=242 Identities=18% Similarity=0.171 Sum_probs=198.2
Q ss_pred CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccc
Q 036049 114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMA 193 (517)
Q Consensus 114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 193 (517)
.++.++++.+.+....+..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 56667777777755555556678899999999999998888899999999999999999986554 8999999999999
Q ss_pred cccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhh
Q 036049 194 QNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKS 273 (517)
Q Consensus 194 ~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 273 (517)
+|.++ .++. .++|++|++++|.+++.++. .+++|++|++++|++++ ++...
T Consensus 89 ~n~l~-------~l~~------~~~L~~L~l~~n~l~~~~~~---------------~~~~L~~L~l~~N~l~~-~~~~~ 139 (317)
T 3o53_A 89 NNYVQ-------ELLV------GPSIETLHAANNNISRVSCS---------------RGQGKKNIYLANNKITM-LRDLD 139 (317)
T ss_dssp SSEEE-------EEEE------CTTCCEEECCSSCCSEEEEC---------------CCSSCEEEECCSSCCCS-GGGBC
T ss_pred CCccc-------cccC------CCCcCEEECCCCccCCcCcc---------------ccCCCCEEECCCCCCCC-ccchh
Confidence 99987 3332 68999999999999987543 36789999999999984 33322
Q ss_pred hhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccc-cCCCCC
Q 036049 274 FLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASI-SNLKGL 352 (517)
Q Consensus 274 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L 352 (517)
+.. .+.|+.|++++|.+++..+..+ ..+++|
T Consensus 140 ~~~------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 171 (317)
T 3o53_A 140 EGC------------------------------------------------RSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (317)
T ss_dssp TGG------------------------------------------------GSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred hhc------------------------------------------------cCCCCEEECCCCCCCcccHHHHhhccCcC
Confidence 222 4567778888898887767666 478999
Q ss_pred CeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCCCCCcCCccCCCcccCCC
Q 036049 353 QVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATFDNTSFDGNS 432 (517)
Q Consensus 353 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~Np 432 (517)
++|+|++|.+++. +. ...+++|++|+|++|++++ +|..+..+++|++|++++|++++.++....+..++.+++++|+
T Consensus 172 ~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 172 EHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp CEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred CEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCC
Confidence 9999999999855 43 3458999999999999995 4556999999999999999999776655677889999999999
Q ss_pred CCCCC
Q 036049 433 GLCGK 437 (517)
Q Consensus 433 ~~c~~ 437 (517)
+.|++
T Consensus 249 ~~~~~ 253 (317)
T 3o53_A 249 FHCGT 253 (317)
T ss_dssp CBHHH
T ss_pred ccCcC
Confidence 99864
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=6.1e-27 Score=241.23 Aligned_cols=235 Identities=19% Similarity=0.152 Sum_probs=128.9
Q ss_pred CCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEE
Q 036049 88 HLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIY 167 (517)
Q Consensus 88 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 167 (517)
+|++|+|++|.+++. .|..+..+. +|++|+|++|.+.+..| |+.+++|++|+|++|.+++..+ .++|++|+
T Consensus 35 ~L~~L~Ls~n~l~~~-~~~~~~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 35 NVKELDLSGNPLSQI-SAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GCCEEECCSSCCCCC-CGGGGTTCT-TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CccEEEeeCCcCCCC-CHHHHhCCC-CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 455555555555442 223333333 55555555555543333 5555555555555555553211 14555555
Q ss_pred cccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCC
Q 036049 168 MSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPR 247 (517)
Q Consensus 168 L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~ 247 (517)
+++|.+++..+. .+++|++|++++|.+++ ..|..+.. +++|++|++++|.+++.++..
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~------~~~~~~~~--l~~L~~L~Ls~N~l~~~~~~~----------- 163 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITM------LRDLDEGC--RSRVQYLDLKLNEIDTVNFAE----------- 163 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCS------GGGBCGGG--GSSEEEEECTTSCCCEEEGGG-----------
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCC------CCchhhcC--CCCCCEEECCCCCCCCcChHH-----------
Confidence 555555543332 23455555555555542 22333333 455555555555555433221
Q ss_pred CCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhh
Q 036049 248 TGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDI 327 (517)
Q Consensus 248 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (517)
....+++|++|+|++|.+++. |... .++.
T Consensus 164 l~~~l~~L~~L~Ls~N~l~~~-~~~~--------------------------------------------------~l~~ 192 (487)
T 3oja_A 164 LAASSDTLEHLNLQYNFIYDV-KGQV--------------------------------------------------VFAK 192 (487)
T ss_dssp GGGGTTTCCEEECTTSCCCEE-ECCC--------------------------------------------------CCTT
T ss_pred HhhhCCcccEEecCCCccccc-cccc--------------------------------------------------cCCC
Confidence 011345555555555555421 1100 0234
Q ss_pred hhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCccc-ccCccccccCCCCCEEecc
Q 036049 328 LAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS-GRIPQQLVELTFLAFFNVS 406 (517)
Q Consensus 328 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~l~ 406 (517)
|+.|++++|.+++. |..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 193 L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 193 LKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 45555555555543 334677788999999999988 46777888889999999999887 5677778888888888876
No 66
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.93 E-value=7.4e-29 Score=254.77 Aligned_cols=134 Identities=22% Similarity=0.242 Sum_probs=67.1
Q ss_pred cEEEEEcCCCCceee----eCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhccc----CCcEEEccCCCCcc----cC
Q 036049 62 HVVKLNLSHSCLFGS----INSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSC----SLKLLDLRSCGFWG----KV 129 (517)
Q Consensus 62 ~l~~L~Ls~n~l~~~----~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~----~L~~L~Ls~n~l~~----~~ 129 (517)
++++|+|++|.+++. ++. .+..+++|++|+|++|.+... .+..+..... +|++|++++|.+.. .+
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~--~l~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISS--ALRVNPALAELNLRSNELGDV-GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHH--HHHTCTTCCEEECTTCCCHHH-HHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CccEEEccCCCCCHHHHHHHHH--HHHhCCCcCEEeCCCCcCChH-HHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 455566666555421 222 444555666666666655432 2223333222 36666666666542 33
Q ss_pred CccCCCCCCCcEEEccCCccccccccccc-----CCccccEEEccccccccc----CchhhhcCCcccccccccccCc
Q 036049 130 PHSIGNFTRLQFLYLGFNNFSGDLLGSIG-----NLRSLEAIYMSKCNFSGQ----ITSSLRNLTELVVLDMAQNSYG 198 (517)
Q Consensus 130 p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~-----~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~N~l~ 198 (517)
+..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.++
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 55555566666666666665543333222 134566666666655542 2344445556666666666554
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=6.1e-25 Score=231.04 Aligned_cols=259 Identities=19% Similarity=0.174 Sum_probs=209.6
Q ss_pred CCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEE
Q 036049 87 VHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAI 166 (517)
Q Consensus 87 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L 166 (517)
.++++|++++|.++. +|..+. ++|++|++++|.+. .+|. .+++|++|+|++|.++ .+|. .+++|++|
T Consensus 40 ~~l~~L~ls~n~L~~--lp~~l~---~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGLTT--LPDCLP---AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCCSC--CCSCCC---TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEE
T ss_pred CCCcEEEecCCCcCc--cChhhC---CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEE
Confidence 469999999999986 787665 49999999999995 5665 5789999999999999 4665 67999999
Q ss_pred EcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCC
Q 036049 167 YMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEP 246 (517)
Q Consensus 167 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~ 246 (517)
++++|.+++ +|. .+++|++|++++|+++ .+|.. +++|++|++++|.+++++.
T Consensus 107 ~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-------~lp~~-----l~~L~~L~Ls~N~l~~l~~------------ 158 (622)
T 3g06_A 107 SIFSNPLTH-LPA---LPSGLCKLWIFGNQLT-------SLPVL-----PPGLQELSVSDNQLASLPA------------ 158 (622)
T ss_dssp EECSCCCCC-CCC---CCTTCCEEECCSSCCS-------CCCCC-----CTTCCEEECCSSCCSCCCC------------
T ss_pred ECcCCcCCC-CCC---CCCCcCEEECCCCCCC-------cCCCC-----CCCCCEEECcCCcCCCcCC------------
Confidence 999999995 454 6789999999999997 55553 6899999999999987632
Q ss_pred CCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchh
Q 036049 247 RTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPD 326 (517)
Q Consensus 247 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (517)
.+++|+.|++++|.++ .+| ..+++|+.|+++++.... +...+.
T Consensus 159 ----~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~----------------------------l~~~~~ 201 (622)
T 3g06_A 159 ----LPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLAS----------------------------LPTLPS 201 (622)
T ss_dssp ----CCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC----------------------------CCCCCT
T ss_pred ----ccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCCCCC----------------------------CCCccc
Confidence 2568999999999998 577 346788888888733211 111256
Q ss_pred hhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEecc
Q 036049 327 ILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVS 406 (517)
Q Consensus 327 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 406 (517)
+|+.|++++|.++ .+|. .+++|+.|+|++|++++ +| ..+++|+.|+|++|+|+ .+|. .+++|+.|+++
T Consensus 202 ~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls 269 (622)
T 3g06_A 202 ELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVY 269 (622)
T ss_dssp TCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECC
T ss_pred hhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCC
Confidence 7999999999998 4554 34889999999999994 66 45689999999999999 5665 67899999999
Q ss_pred CCcccccCCCCCcCCccCCCcccCCCCCC
Q 036049 407 DNYLTGLIPQGKQFATFDNTSFDGNSGLC 435 (517)
Q Consensus 407 ~N~l~~~~p~~~~~~~l~~~~~~~Np~~c 435 (517)
+|+|+..++....+..+..+++++|++..
T Consensus 270 ~N~L~~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 270 RNQLTRLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp SSCCCSCCGGGGGSCTTCEEECCSCCCCH
T ss_pred CCCCCcCCHHHhhccccCEEEecCCCCCC
Confidence 99999554444567788889999998753
No 68
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.93 E-value=8.3e-29 Score=254.41 Aligned_cols=358 Identities=14% Similarity=0.089 Sum_probs=225.7
Q ss_pred CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCC---CCchhhhhcccCCcEEEccCCCCcccCCccC-CCC
Q 036049 61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSS---EIQPEIINLSCSLKLLDLRSCGFWGKVPHSI-GNF 136 (517)
Q Consensus 61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~---~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l 136 (517)
.++++|+|+++.++..... ..+..+++|++|++++|.++.. .++..+..+. +|++|++++|.+....+..+ ..+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWA-ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNP-ALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCCCCHHHHH-HHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCT-TCCEEECTTCCCHHHHHHHHHHTT
T ss_pred ccceehhhhhcccCchhHH-HHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCC-CcCEEeCCCCcCChHHHHHHHHHH
Confidence 4789999999998754322 1377899999999999998742 1344555556 99999999999965444333 334
Q ss_pred C----CCcEEEccCCcccc----cccccccCCccccEEEcccccccccCchhhhc-----CCcccccccccccCcceecc
Q 036049 137 T----RLQFLYLGFNNFSG----DLLGSIGNLRSLEAIYMSKCNFSGQITSSLRN-----LTELVVLDMAQNSYGGTMEI 203 (517)
Q Consensus 137 ~----~L~~L~Ls~n~i~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-----l~~L~~L~l~~N~l~~~~~~ 203 (517)
+ +|++|++++|.++. .++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++..
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~-- 158 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS-- 158 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG--
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH--
Confidence 4 79999999999984 56888999999999999999998654544432 568999999999887411
Q ss_pred ccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCC-CCCCcccEEEccCCcCCCC----CChhhhhccc
Q 036049 204 EGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTG-CGFSKLRIIDLSDNRFTGK----LPSKSFLCWN 278 (517)
Q Consensus 204 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~-~~l~~L~~L~Ls~N~l~~~----~p~~~~~~l~ 278 (517)
...++..+.. +++|++|++++|.+++...... ...+ ...++|++|++++|.+++. ++ ..+..++
T Consensus 159 ~~~l~~~l~~--~~~L~~L~L~~n~i~~~~~~~l--------~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~ 227 (461)
T 1z7x_W 159 CEPLASVLRA--KPDFKELTVSNNDINEAGVRVL--------CQGLKDSPCQLEALKLESCGVTSDNCRDLC-GIVASKA 227 (461)
T ss_dssp HHHHHHHHHH--CTTCCEEECCSSBCHHHHHHHH--------HHHHHHSCCCCCEEECTTSCCBTTHHHHHH-HHHHHCT
T ss_pred HHHHHHHHhh--CCCCCEEECcCCCcchHHHHHH--------HHHHhcCCCCceEEEccCCCCcHHHHHHHH-HHHHhCC
Confidence 0123444555 8999999999999876422100 0000 1256899999999998743 23 3456778
Q ss_pred ccceeccCcccccccccCCCcccchhhhccceeeeecCccccC---------CCchhhhhhhhCCCCCCcccCcccccC-
Q 036049 279 AMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAY---------NKIPDILAGIILSNKSFDGAIPASISN- 348 (517)
Q Consensus 279 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~L~~L~Ls~n~l~~~~p~~~~~- 348 (517)
+|+.|+++++..-.................+..+.+.+..... ....+.|++|++++|.+++..+..+..
T Consensus 228 ~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 307 (461)
T 1z7x_W 228 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET 307 (461)
T ss_dssp TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH
T ss_pred CccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHH
Confidence 8999998875321100000000000001111122221111100 111355777777777776543333322
Q ss_pred ----CCCCCeEeCcCcccccc----CChhccCCCCCCeeeCCCCcccccCcccccc-----CCCCCEEeccCCcccc---
Q 036049 349 ----LKGLQVLNLHNNNLQGH----IPSCLGNLTNLESLDLSNNKFSGRIPQQLVE-----LTFLAFFNVSDNYLTG--- 412 (517)
Q Consensus 349 ----l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~l~~N~l~~--- 412 (517)
.++|++|+|++|.+++. ++..+..+++|++|+|++|++++..+..+.. .++|++|++++|++++
T Consensus 308 l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 387 (461)
T 1z7x_W 308 LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSC 387 (461)
T ss_dssp HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH
T ss_pred hccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhH
Confidence 25777777777777644 3455566677777777777776554443432 5677777777777764
Q ss_pred -cCCCC-CcCCccCCCcccCCCC
Q 036049 413 -LIPQG-KQFATFDNTSFDGNSG 433 (517)
Q Consensus 413 -~~p~~-~~~~~l~~~~~~~Np~ 433 (517)
.+|.. ...+++..+++++|+.
T Consensus 388 ~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 388 SSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp HHHHHHHHHCCCCCEEECCSSSC
T ss_pred HHHHHHHHhCCCccEEECCCCCC
Confidence 33332 2355666677777754
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=4.4e-25 Score=210.60 Aligned_cols=228 Identities=20% Similarity=0.195 Sum_probs=151.5
Q ss_pred EEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEccc
Q 036049 91 WLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSK 170 (517)
Q Consensus 91 ~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~ 170 (517)
..+.++..+.. +|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus 11 ~~~c~~~~l~~--ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 85 (276)
T 2z62_A 11 TYQCMELNFYK--IPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (276)
T ss_dssp EEECTTSCCSS--CCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred eEEecCCCccc--cCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC
Confidence 44555556654 565442 3788888888888666666788888888888888888866666788888888888888
Q ss_pred ccccccCchhhhcCCcccccccccccCcceecccccccc-ccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCC
Q 036049 171 CNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHK-WLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTG 249 (517)
Q Consensus 171 n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~ 249 (517)
|.+++..+..|.++++|++|++++|.+. .++. .+.. +++|++|++++|.+++.. .+..+
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------~~~~~~~~~--l~~L~~L~l~~n~l~~~~-----------l~~~~ 145 (276)
T 2z62_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLA-------SLENFPIGH--LKTLKELNVAHNLIQSFK-----------LPEYF 145 (276)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCC-------CSTTCCCTT--CTTCCEEECCSSCCCCCC-----------CCGGG
T ss_pred CccCccChhhhcCCccccEEECCCCCcc-------ccCchhccc--CCCCCEEECcCCccceec-----------Cchhh
Confidence 8887766677777777777777777665 2222 2333 566666666666665431 01123
Q ss_pred CCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhh
Q 036049 250 CGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILA 329 (517)
Q Consensus 250 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 329 (517)
..+++|++|++++|+++ .++
T Consensus 146 ~~l~~L~~L~Ls~N~l~-~~~----------------------------------------------------------- 165 (276)
T 2z62_A 146 SNLTNLEHLDLSSNKIQ-SIY----------------------------------------------------------- 165 (276)
T ss_dssp GGCTTCCEEECCSSCCC-EEC-----------------------------------------------------------
T ss_pred ccCCCCCEEECCCCCCC-cCC-----------------------------------------------------------
Confidence 45556666666666555 222
Q ss_pred hhhCCCCCCcccCcccccCCCCCC----eEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEec
Q 036049 330 GIILSNKSFDGAIPASISNLKGLQ----VLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNV 405 (517)
Q Consensus 330 ~L~Ls~n~l~~~~p~~~~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 405 (517)
+..+..+++|+ .|++++|.+++..+..+. ..+|++|+|++|++++..+..|..+++|+.|++
T Consensus 166 -------------~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 231 (276)
T 2z62_A 166 -------------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 231 (276)
T ss_dssp -------------GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEEC
T ss_pred -------------HHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEc
Confidence 22233333333 788888888855554443 447888888888888666666778888888888
Q ss_pred cCCcccccCCCC
Q 036049 406 SDNYLTGLIPQG 417 (517)
Q Consensus 406 ~~N~l~~~~p~~ 417 (517)
++|++++..|..
T Consensus 232 ~~N~~~c~c~~l 243 (276)
T 2z62_A 232 HTNPWDCSCPRI 243 (276)
T ss_dssp CSSCBCCCTTTT
T ss_pred cCCcccccCCch
Confidence 888888777654
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=6.9e-25 Score=210.42 Aligned_cols=69 Identities=28% Similarity=0.311 Sum_probs=48.5
Q ss_pred ccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCccccc
Q 036049 344 ASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGL 413 (517)
Q Consensus 344 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 413 (517)
..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|+.+++++|++.+.
T Consensus 142 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred hhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 34556677777777777777555555677777777777777777 5666666677777777777777654
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=6e-25 Score=209.66 Aligned_cols=135 Identities=22% Similarity=0.333 Sum_probs=64.8
Q ss_pred CCCEEEcCCCCCCCCCCch-hhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEE
Q 036049 88 HLEWLNLALNDFNSSEIQP-EIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAI 166 (517)
Q Consensus 88 ~L~~L~Ls~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L 166 (517)
+|++|++++|.++. +++ .+..+. +|++|++++|.+.+..+..|.++++|++|++++|.+++..+..|.++++|++|
T Consensus 29 ~l~~L~ls~n~l~~--~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 29 STKNLDLSFNPLRH--LGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TCCEEECTTCCCCE--ECTTTTTTCT-TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CccEEECCCCcccc--cCHhHhcccc-CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 45555555555544 222 233333 55555555555544444445555555555555555554444445555555555
Q ss_pred EcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCccccc
Q 036049 167 YMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGF 232 (517)
Q Consensus 167 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 232 (517)
++++|.+.+..+..+..+++|++|++++|.+++. .+|..+.. +++|++|++++|++++.
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~l~~~~~~--l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-----KLPEYFSN--LTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-----CCCGGGGG--CTTCCEEECCSSCCCEE
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCcccee-----cCchhhcc--CCCCCEEECCCCCCCcC
Confidence 5555555544333455555555555555544410 13334443 45555555555555443
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=7.4e-25 Score=208.30 Aligned_cols=213 Identities=20% Similarity=0.279 Sum_probs=178.9
Q ss_pred CCCcccceeecCCCCCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCch-hhhhcccCCcEEEccCCC
Q 036049 46 VDCCSWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQP-EIINLSCSLKLLDLRSCG 124 (517)
Q Consensus 46 ~~~C~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n~ 124 (517)
.++|.|.|+.|.-. ..++.++++++.++. +|. .+. ++|++|+|++|.++. +++ .+..+. +|++|++++|.
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~--~~~--~~l~~L~l~~n~l~~--~~~~~~~~l~-~L~~L~l~~n~ 72 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPS--NIP--ADTKKLDLQSNKLSS--LPSKAFHRLT-KLRLLYLNDNK 72 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCS--CCC--TTCSEEECCSSCCSC--CCTTSSSSCT-TCCEEECCSSC
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCC--CCC--CCCCEEECcCCCCCe--eCHHHhcCCC-CCCEEECCCCc
Confidence 47899999998532 356789999999985 443 332 689999999999987 555 455565 99999999999
Q ss_pred CcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccc
Q 036049 125 FWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIE 204 (517)
Q Consensus 125 l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~ 204 (517)
+....+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.++
T Consensus 73 l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------ 146 (270)
T 2o6q_A 73 LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ------ 146 (270)
T ss_dssp CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------
T ss_pred cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC------
Confidence 97666666799999999999999999777778899999999999999999888888999999999999999987
Q ss_pred cccccc-cccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhccccccee
Q 036049 205 GKVHKW-LLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIV 283 (517)
Q Consensus 205 ~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L 283 (517)
.++.. +.. +++|++|++++|.++++++. .+..+++|++|++++|+++ .+|...+..+++|+.+
T Consensus 147 -~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~------------~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L 210 (270)
T 2o6q_A 147 -SLPKGVFDK--LTSLKELRLYNNQLKRVPEG------------AFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKML 210 (270)
T ss_dssp -CCCTTTTTT--CTTCCEEECCSSCCSCCCTT------------TTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEE
T ss_pred -ccCHhHccC--CcccceeEecCCcCcEeChh------------HhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEE
Confidence 45544 444 89999999999999987544 3577899999999999998 6777778889999999
Q ss_pred ccCccc
Q 036049 284 NASELR 289 (517)
Q Consensus 284 ~l~~~~ 289 (517)
+++++.
T Consensus 211 ~l~~N~ 216 (270)
T 2o6q_A 211 QLQENP 216 (270)
T ss_dssp ECCSSC
T ss_pred EecCCC
Confidence 988743
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.2e-23 Score=199.84 Aligned_cols=70 Identities=24% Similarity=0.298 Sum_probs=50.6
Q ss_pred ccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCC
Q 036049 346 ISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIP 415 (517)
Q Consensus 346 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 415 (517)
|..+++|+.|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|++.+..+
T Consensus 153 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 4556777777777777776555667777778888888887776555567777778888888877776554
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=1.9e-23 Score=200.39 Aligned_cols=203 Identities=22% Similarity=0.227 Sum_probs=125.1
Q ss_pred ccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCc
Q 036049 82 SLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLR 161 (517)
Q Consensus 82 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~ 161 (517)
.+.+++++++++++++.++. +|..+. +++++|++++|.+.+..+..|.++++|++|+|++|.+++. +. .+.++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~--ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~ 77 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA--LPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLP 77 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS--CCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCT
T ss_pred cccccCCccEEECCCCCCCc--CCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCC
Confidence 35566777777777777765 565443 2677777777777666666677777777777777777643 22 25666
Q ss_pred cccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccc-cccccccCCCCCeEeccCCcccccCCCCCCCC
Q 036049 162 SLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVH-KWLLDPNMQNLNALNLSHNLLTGFDQHLVLLP 240 (517)
Q Consensus 162 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~ 240 (517)
+|++|++++|.++ .+|..+..+++|++|++++|+++ .++ ..+.. +++|++|++++|+++++++.
T Consensus 78 ~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-------~l~~~~~~~--l~~L~~L~L~~N~l~~~~~~----- 142 (290)
T 1p9a_G 78 VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-------SLPLGALRG--LGELQELYLKGNELKTLPPG----- 142 (290)
T ss_dssp TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-------CCCSSTTTT--CTTCCEEECTTSCCCCCCTT-----
T ss_pred cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCc-------ccCHHHHcC--CCCCCEEECCCCCCCccChh-----
Confidence 6777777777666 45555555666666666666554 222 22333 55555555555555544322
Q ss_pred CCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCcccc
Q 036049 241 GNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMA 320 (517)
Q Consensus 241 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (517)
.+..+++|+.|++++|+++ .+|
T Consensus 143 -------~~~~l~~L~~L~L~~N~l~-~l~-------------------------------------------------- 164 (290)
T 1p9a_G 143 -------LLTPTPKLEKLSLANNNLT-ELP-------------------------------------------------- 164 (290)
T ss_dssp -------TTTTCTTCCEEECTTSCCS-CCC--------------------------------------------------
T ss_pred -------hcccccCCCEEECCCCcCC-ccC--------------------------------------------------
Confidence 2234455555555555554 222
Q ss_pred CCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCccc
Q 036049 321 YNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 387 (517)
Q Consensus 321 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 387 (517)
+..|..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|.+.
T Consensus 165 ----------------------~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 165 ----------------------AGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp ----------------------TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ----------------------HHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 233556777888888888887 66777777778888888888775
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.2e-23 Score=200.17 Aligned_cols=220 Identities=20% Similarity=0.264 Sum_probs=143.9
Q ss_pred CCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEc
Q 036049 89 LEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYM 168 (517)
Q Consensus 89 L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L 168 (517)
+..+++..+.+... .....+. +|+.|++++|.+. .++ .+..+++|++|++++|.+++ + ..+..+++|++|++
T Consensus 21 l~~l~l~~~~~~~~---~~~~~l~-~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 21 TIKANLKKKSVTDA---VTQNELN-SIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHTCSCTTSE---ECHHHHT-TCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEEC
T ss_pred HHHHHhcCcccccc---ccccccc-ceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEEC
Confidence 33444555544431 2233444 6666666666653 222 35666666666666666664 2 35666666666666
Q ss_pred ccccccccCchhhhcCCcccccccccccCcceecccccccc-ccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCC
Q 036049 169 SKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHK-WLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPR 247 (517)
Q Consensus 169 ~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~ 247 (517)
++|.+++..+..|.++++|++|++++|.++ .++. .+.. +++|++|++++|.+++.++.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~------------ 151 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQ-------SLPDGVFDK--LTNLTYLNLAHNQLQSLPKG------------ 151 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCC-------CCCTTTTTT--CTTCCEEECCSSCCCCCCTT------------
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCC-------ccCHHHhcc--CCCCCEEECCCCccCccCHH------------
Confidence 666666555555666666777777766665 2222 2333 67777778877777765443
Q ss_pred CCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhh
Q 036049 248 TGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDI 327 (517)
Q Consensus 248 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (517)
.+..+++|++|++++|+++ .+|.
T Consensus 152 ~~~~l~~L~~L~l~~n~l~-~~~~-------------------------------------------------------- 174 (272)
T 3rfs_A 152 VFDKLTNLTELDLSYNQLQ-SLPE-------------------------------------------------------- 174 (272)
T ss_dssp TTTTCTTCCEEECCSSCCC-CCCT--------------------------------------------------------
T ss_pred HhccCccCCEEECCCCCcC-ccCH--------------------------------------------------------
Confidence 2467788888888888887 3332
Q ss_pred hhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccC
Q 036049 328 LAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSD 407 (517)
Q Consensus 328 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~ 407 (517)
..+..+++|+.|++++|++++..+..+..+++|++|+|++|.+.+. ++.|+.++++.
T Consensus 175 ----------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~ 231 (272)
T 3rfs_A 175 ----------------GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWI 231 (272)
T ss_dssp ----------------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHH
T ss_pred ----------------HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHH
Confidence 2345667888888888888877777778888888888888877643 45688888888
Q ss_pred CcccccCCCC
Q 036049 408 NYLTGLIPQG 417 (517)
Q Consensus 408 N~l~~~~p~~ 417 (517)
|.++|.+|..
T Consensus 232 n~~~g~ip~~ 241 (272)
T 3rfs_A 232 NKHSGVVRNS 241 (272)
T ss_dssp HHTGGGBBCT
T ss_pred HhCCCcccCc
Confidence 8888888864
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=2.7e-23 Score=197.62 Aligned_cols=157 Identities=21% Similarity=0.287 Sum_probs=77.8
Q ss_pred cccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCcc
Q 036049 83 LYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRS 162 (517)
Q Consensus 83 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~ 162 (517)
+..+++|+.|++++|.++. ++ .+..+. +|++|++++|.+.+ + ..+..+++|++|++++|.+++..+..|..+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--~~-~l~~l~-~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 110 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS--VQ-GIQYLP-NVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTN 110 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC--CT-TGGGCT-TCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred cccccceeeeeeCCCCccc--cc-ccccCC-CCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcC
Confidence 3444555555555555543 22 233333 55555555555533 1 24555555555555555555444444555555
Q ss_pred ccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccc-cccccCCCCCeEeccCCcccccCCCCCCCCC
Q 036049 163 LEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKW-LLDPNMQNLNALNLSHNLLTGFDQHLVLLPG 241 (517)
Q Consensus 163 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~ 241 (517)
|++|++++|.+++..+..|..+++|++|++++|.++ .++.. +.. +++|++|++++|++++.++.
T Consensus 111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~------ 175 (272)
T 3rfs_A 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-------SLPKGVFDK--LTNLTELDLSYNQLQSLPEG------ 175 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-------CCCTTTTTT--CTTCCEEECCSSCCCCCCTT------
T ss_pred CCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC-------ccCHHHhcc--CccCCEEECCCCCcCccCHH------
Confidence 555555555555444444555555555555555554 22222 222 55555555555555544322
Q ss_pred CCCCCCCCCCCCcccEEEccCCcCC
Q 036049 242 NNEEPRTGCGFSKLRIIDLSDNRFT 266 (517)
Q Consensus 242 ~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (517)
.+..+++|++|++++|+++
T Consensus 176 ------~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 176 ------VFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ------TTTTCTTCCEEECCSSCCS
T ss_pred ------HhcCCccCCEEECCCCcCC
Confidence 2344555555555555555
No 77
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=1.5e-25 Score=220.13 Aligned_cols=265 Identities=17% Similarity=0.181 Sum_probs=158.1
Q ss_pred CCcccceeecCCCCCcEEEEEcCCCCceeeeCCCcccccC--CCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCC
Q 036049 47 DCCSWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYKL--VHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCG 124 (517)
Q Consensus 47 ~~C~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 124 (517)
-|..|.++.|+. ..+++++++++.+.. . .+..+ ++++.|++++|.+.+ .++.++.+. +|++|++++|.
T Consensus 35 vc~~W~~~~~~~--~~~~~l~l~~~~~~~---~--~~~~~~~~~l~~L~l~~n~l~~--~~~~~~~~~-~L~~L~L~~~~ 104 (336)
T 2ast_B 35 VCKRWYRLASDE--SLWQTLDLTGKNLHP---D--VTGRLLSQGVIAFRCPRSFMDQ--PLAEHFSPF-RVQHMDLSNSV 104 (336)
T ss_dssp SCHHHHHHHTCS--TTSSEEECTTCBCCH---H--HHHHHHHTTCSEEECTTCEECS--CCCSCCCCB-CCCEEECTTCE
T ss_pred HHHHHHHHhcCc--hhheeeccccccCCH---H--HHHhhhhccceEEEcCCccccc--cchhhccCC-CCCEEEccCCC
Confidence 455799888753 357788888877652 2 44555 677777777777765 333345554 77777777776
Q ss_pred Cccc-CCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccc-cccc-cCchhhhcCCcccccccccc-cCcce
Q 036049 125 FWGK-VPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKC-NFSG-QITSSLRNLTELVVLDMAQN-SYGGT 200 (517)
Q Consensus 125 l~~~-~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n-~l~~-~~p~~l~~l~~L~~L~l~~N-~l~~~ 200 (517)
+.+. +|..+..+++|++|++++|.+++..+..++.+++|++|++++| .+++ .++..+.++++|++|++++| .+++.
T Consensus 105 l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 184 (336)
T 2ast_B 105 IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK 184 (336)
T ss_dssp ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH
T ss_pred cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH
Confidence 6544 5556666777777777777766666666666777777777776 4553 24455666666666666666 55421
Q ss_pred eccccccccccccccCC-CCCeEeccCCc--ccc--cCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhh
Q 036049 201 MEIEGKVHKWLLDPNMQ-NLNALNLSHNL--LTG--FDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFL 275 (517)
Q Consensus 201 ~~~~~~~~~~~~~~~l~-~L~~L~Ls~n~--l~~--~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 275 (517)
.++..+.. ++ +|++|++++|. ++. ++. .+..+++|++|++++|.+
T Consensus 185 -----~~~~~~~~--l~~~L~~L~l~~~~~~~~~~~l~~-------------~~~~~~~L~~L~l~~~~~---------- 234 (336)
T 2ast_B 185 -----HVQVAVAH--VSETITQLNLSGYRKNLQKSDLST-------------LVRRCPNLVHLDLSDSVM---------- 234 (336)
T ss_dssp -----HHHHHHHH--SCTTCCEEECCSCGGGSCHHHHHH-------------HHHHCTTCSEEECTTCTT----------
T ss_pred -----HHHHHHHh--cccCCCEEEeCCCcccCCHHHHHH-------------HHhhCCCCCEEeCCCCCc----------
Confidence 13333333 55 55555555552 221 100 112334444444444441
Q ss_pred cccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeE
Q 036049 276 CWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVL 355 (517)
Q Consensus 276 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 355 (517)
+++..+..+..+++|++|
T Consensus 235 --------------------------------------------------------------l~~~~~~~l~~l~~L~~L 252 (336)
T 2ast_B 235 --------------------------------------------------------------LKNDCFQEFFQLNYLQHL 252 (336)
T ss_dssp --------------------------------------------------------------CCGGGGGGGGGCTTCCEE
T ss_pred --------------------------------------------------------------CCHHHHHHHhCCCCCCEe
Confidence 333444456677888888
Q ss_pred eCcCcc-ccccCChhccCCCCCCeeeCCCCcccccCccccccC-CCCCEEeccCCcccccCCCC
Q 036049 356 NLHNNN-LQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVEL-TFLAFFNVSDNYLTGLIPQG 417 (517)
Q Consensus 356 ~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~l~~N~l~~~~p~~ 417 (517)
++++|. +.......+..+++|++|++++| +... .+..+ ..+..|++++|++++..|..
T Consensus 253 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 253 SLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred eCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCc
Confidence 888884 33222235777888888888888 4432 23333 23666668888888887753
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=7.1e-24 Score=205.75 Aligned_cols=235 Identities=19% Similarity=0.183 Sum_probs=146.7
Q ss_pred CCCCCEEEcCCCCCCCCCCch--hhhhcccCCcEEEccCCCCcccCCccC--CCCCCCcEEEccCCccccccc----ccc
Q 036049 86 LVHLEWLNLALNDFNSSEIQP--EIINLSCSLKLLDLRSCGFWGKVPHSI--GNFTRLQFLYLGFNNFSGDLL----GSI 157 (517)
Q Consensus 86 l~~L~~L~Ls~n~l~~~~~~~--~~~~~~~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~Ls~n~i~~~~p----~~~ 157 (517)
...++.+.+.++.++...+.. ...... +|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYS-RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHS-CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccC-ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 335677888777764321111 122233 68888888888877788777 788888888888888876444 344
Q ss_pred cCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCC
Q 036049 158 GNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLV 237 (517)
Q Consensus 158 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 237 (517)
..+++|++|++++|.+.+..+..|..+++|++|++++|++.+.. .++.......+++|++|++++|+++..+...
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~- 216 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGER----GLMAALCPHKFPAIQNLALRNTGMETPTGVC- 216 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHH----HHHTTSCTTSSCCCCSCBCCSSCCCCHHHHH-
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccch----hhhHHHhhhcCCCCCEEECCCCCCCchHHHH-
Confidence 56778888888888887777777777777777777777765211 0111111011556666666666554322100
Q ss_pred CCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCc
Q 036049 238 LLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGR 317 (517)
Q Consensus 238 ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (517)
...+..+++|++|++++|+++
T Consensus 217 --------~~l~~~l~~L~~L~Ls~N~l~--------------------------------------------------- 237 (310)
T 4glp_A 217 --------AALAAAGVQPHSLDLSHNSLR--------------------------------------------------- 237 (310)
T ss_dssp --------HHHHHHTCCCSSEECTTSCCC---------------------------------------------------
T ss_pred --------HHHHhcCCCCCEEECCCCCCC---------------------------------------------------
Confidence 000123345555555555554
Q ss_pred cccCCCchhhhhhhhCCCCCCcccCcccccCC---CCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCcccc
Q 036049 318 MMAYNKIPDILAGIILSNKSFDGAIPASISNL---KGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQL 394 (517)
Q Consensus 318 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 394 (517)
+..|..+..+ ++|++|+|++|+++ .+|..+. ++|++|+|++|+|++. |. +
T Consensus 238 ----------------------~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~ 290 (310)
T 4glp_A 238 ----------------------ATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-P 290 (310)
T ss_dssp ----------------------CCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-T
T ss_pred ----------------------ccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-h
Confidence 3333333333 67888888888888 6666654 6888888888888843 33 5
Q ss_pred ccCCCCCEEeccCCcccc
Q 036049 395 VELTFLAFFNVSDNYLTG 412 (517)
Q Consensus 395 ~~l~~L~~L~l~~N~l~~ 412 (517)
..+++|+.|++++|+++.
T Consensus 291 ~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 291 DELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TSCCCCSCEECSSTTTSC
T ss_pred hhCCCccEEECcCCCCCC
Confidence 677888888888888763
No 79
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=6.6e-23 Score=192.58 Aligned_cols=191 Identities=21% Similarity=0.263 Sum_probs=161.8
Q ss_pred CCcccceeecCCCCCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCc
Q 036049 47 DCCSWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFW 126 (517)
Q Consensus 47 ~~C~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 126 (517)
+||.|.|..|.. ..++++++++.++.. |. .+. +++++|+|++|.+++. .+..+..+. +|++|+|++|.+.
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~~~-p~--~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~-~L~~L~L~~n~l~ 72 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLDSV-PS--GIP--ADTEKLDLQSTGLATL-SDATFRGLT-KLTWLNLDYNQLQ 72 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCSSC-CS--CCC--TTCCEEECTTSCCCCC-CTTTTTTCT-TCCEEECTTSCCC
T ss_pred cCCCCCceEcCC---CCeEEecCCCCcccc-CC--CCC--CCCCEEEccCCCcCcc-CHhHhcCcc-cCCEEECCCCcCC
Confidence 688999999953 456799999999744 43 333 6899999999999884 344556666 9999999999998
Q ss_pred ccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccc
Q 036049 127 GKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGK 206 (517)
Q Consensus 127 ~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 206 (517)
+..+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|++|++++|.++ .
T Consensus 73 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-------~ 145 (251)
T 3m19_A 73 TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-------S 145 (251)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------C
T ss_pred ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-------c
Confidence 888888999999999999999999887888999999999999999999777777899999999999999998 4
Q ss_pred ccc-ccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCC
Q 036049 207 VHK-WLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGK 268 (517)
Q Consensus 207 ~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 268 (517)
++. .+.. +++|++|++++|+++++++. .+..+++|++|++++|.+.+.
T Consensus 146 ~~~~~~~~--l~~L~~L~L~~N~l~~~~~~------------~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 146 IPAGAFDK--LTNLQTLSLSTNQLQSVPHG------------AFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTT--CTTCCEEECCSSCCSCCCTT------------TTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHcCc--CcCCCEEECCCCcCCccCHH------------HHhCCCCCCEEEeeCCceeCC
Confidence 444 4555 89999999999999987653 357889999999999999865
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=3.4e-23 Score=193.11 Aligned_cols=134 Identities=18% Similarity=0.220 Sum_probs=78.2
Q ss_pred CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCc-ccccccccccCCccccEEEccc-ccccccCchhhhcCCcccccc
Q 036049 114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNN-FSGDLLGSIGNLRSLEAIYMSK-CNFSGQITSSLRNLTELVVLD 191 (517)
Q Consensus 114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-i~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~ 191 (517)
+|++|++++|.+.+..+..|.++++|++|++++|. ++...+..|.++++|++|++++ |.+++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 55566666666544444456666666666666664 5544444566666666666666 666655455566666666666
Q ss_pred cccccCcceeccccccccccccccCCCCC---eEeccCC-cccccCCCCCCCCCCCCCCCCCCCCCccc-EEEccCCcCC
Q 036049 192 MAQNSYGGTMEIEGKVHKWLLDPNMQNLN---ALNLSHN-LLTGFDQHLVLLPGNNEEPRTGCGFSKLR-IIDLSDNRFT 266 (517)
Q Consensus 192 l~~N~l~~~~~~~~~~~~~~~~~~l~~L~---~L~Ls~n-~l~~~~~~~~ll~~~~~~~~~~~~l~~L~-~L~Ls~N~l~ 266 (517)
+++|.++ .+|. +.. +++|+ +|++++| .++++++. .+..+++|+ +|++++|+++
T Consensus 112 l~~n~l~-------~lp~-~~~--l~~L~~L~~L~l~~N~~l~~i~~~------------~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 112 IFNTGLK-------MFPD-LTK--VYSTDIFFILEITDNPYMTSIPVN------------AFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp EEEECCC-------SCCC-CTT--CCBCCSEEEEEEESCTTCCEECTT------------TTTTTBSSEEEEECCSCCCC
T ss_pred CCCCCCc-------cccc-ccc--ccccccccEEECCCCcchhhcCcc------------cccchhcceeEEEcCCCCCc
Confidence 6666555 2333 222 44554 6666666 66655433 245566777 7777777765
Q ss_pred CCCC
Q 036049 267 GKLP 270 (517)
Q Consensus 267 ~~~p 270 (517)
.+|
T Consensus 170 -~i~ 172 (239)
T 2xwt_C 170 -SVQ 172 (239)
T ss_dssp -EEC
T ss_pred -ccC
Confidence 444
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=8.4e-25 Score=217.08 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=36.3
Q ss_pred CCCCeEeCcCccccccCC----hhccCCCCCCeeeCCCCccccc-------CccccccCCCCCEEeccCCccccc
Q 036049 350 KGLQVLNLHNNNLQGHIP----SCLGNLTNLESLDLSNNKFSGR-------IPQQLVELTFLAFFNVSDNYLTGL 413 (517)
Q Consensus 350 ~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~-------~p~~l~~l~~L~~L~l~~N~l~~~ 413 (517)
++|++|+|++|.+++..+ ..+..+++|++|+|++|.+.+. ++..+..+++|+.|++++|++...
T Consensus 225 ~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 366666666666654333 2234556666666666663322 223455566666677777766544
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=2.4e-23 Score=201.99 Aligned_cols=191 Identities=15% Similarity=0.086 Sum_probs=141.0
Q ss_pred cEEEEEcCCCCceeee-CCCcccccCCCCCEEEcCCCCCCCCCCchhh--hhcccCCcEEEccCCCCcccCC----ccCC
Q 036049 62 HVVKLNLSHSCLFGSI-NSSSSLYKLVHLEWLNLALNDFNSSEIQPEI--INLSCSLKLLDLRSCGFWGKVP----HSIG 134 (517)
Q Consensus 62 ~l~~L~Ls~n~l~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~--~~~~~~L~~L~Ls~n~l~~~~p----~~~~ 134 (517)
+++.+.+.++.+.... .....+..+++|++|++++|.+.+. .|..+ ..+. +|++|++++|.+.+..+ ..+.
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~~-~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGT-MPPLPLEATGL-ALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSC-CCCCSSSCCCB-CCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccc-hhhhhhhccCC-CCCEEEeecccccchhhhhHHHHhh
Confidence 4678888887765321 0000233457799999999999875 66665 5555 99999999999976555 3456
Q ss_pred CCCCCcEEEccCCcccccccccccCCccccEEEccccccccc--C--chhhhcCCcccccccccccCcceeccccccccc
Q 036049 135 NFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQ--I--TSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKW 210 (517)
Q Consensus 135 ~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~--~--p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 210 (517)
.+++|++|+|++|.+.+..+..|+.+++|++|+|++|++.+. + +..+..+++|++|++++|+++... ..+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~----~~~~~ 218 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT----GVCAA 218 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH----HHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH----HHHHH
Confidence 799999999999999988889999999999999999998642 2 233478999999999999996211 11112
Q ss_pred -cccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCC
Q 036049 211 -LLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLP 270 (517)
Q Consensus 211 -~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 270 (517)
+.. +++|++|++++|.+++..|.. ...+..+++|++|++++|+++ .+|
T Consensus 219 l~~~--l~~L~~L~Ls~N~l~~~~p~~---------~~~~~~~~~L~~L~Ls~N~l~-~lp 267 (310)
T 4glp_A 219 LAAA--GVQPHSLDLSHNSLRATVNPS---------APRCMWSSALNSLNLSFAGLE-QVP 267 (310)
T ss_dssp HHHH--TCCCSSEECTTSCCCCCCCSC---------CSSCCCCTTCCCEECCSSCCC-SCC
T ss_pred HHhc--CCCCCEEECCCCCCCccchhh---------HHhccCcCcCCEEECCCCCCC-chh
Confidence 233 899999999999999874321 011223478999999999887 555
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=3.4e-22 Score=193.46 Aligned_cols=39 Identities=31% Similarity=0.461 Sum_probs=19.8
Q ss_pred cCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCccc
Q 036049 347 SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 387 (517)
Q Consensus 347 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 387 (517)
..+++|++|+|++|++++..+ +..+++|+.|+|++|+++
T Consensus 192 ~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 192 ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp GGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred cCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 344555555555555553221 455555555555555554
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=5e-24 Score=213.52 Aligned_cols=88 Identities=17% Similarity=0.273 Sum_probs=62.8
Q ss_pred hhhhhCCCCCCc----ccCcccccCCCCCCeEeCcCcccccc----CChhccC--CCCCCeeeCCCCcccc----cCccc
Q 036049 328 LAGIILSNKSFD----GAIPASISNLKGLQVLNLHNNNLQGH----IPSCLGN--LTNLESLDLSNNKFSG----RIPQQ 393 (517)
Q Consensus 328 L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~--l~~L~~L~Ls~N~l~~----~~p~~ 393 (517)
|+.|+|++|.++ +.+|..+..+++|+.|+|++|.+++. ++..+.. +++|++|+|++|.+++ .+|..
T Consensus 218 L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~ 297 (386)
T 2ca6_A 218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV 297 (386)
T ss_dssp CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH
T ss_pred ccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHH
Confidence 334444444443 34556677788888888888888755 4566633 8888999999998886 37766
Q ss_pred c-ccCCCCCEEeccCCcccccCC
Q 036049 394 L-VELTFLAFFNVSDNYLTGLIP 415 (517)
Q Consensus 394 l-~~l~~L~~L~l~~N~l~~~~p 415 (517)
+ .++++|++|++++|++++..|
T Consensus 298 l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 298 IDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHhcCCCceEEEccCCcCCcchh
Confidence 6 567889999999998887654
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=2.1e-24 Score=214.26 Aligned_cols=270 Identities=17% Similarity=0.164 Sum_probs=179.6
Q ss_pred EEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCc----hhhhhcccCCcEEEccCCCCcccCCccCCCC-----
Q 036049 66 LNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQ----PEIINLSCSLKLLDLRSCGFWGKVPHSIGNF----- 136 (517)
Q Consensus 66 L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~----~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l----- 136 (517)
+++++|.+++.++. .+...++|++|+|++|.++.. .+ ..+..+..+|++|+|++|.+.+..+..|..+
T Consensus 3 ~~ls~n~~~~~~~~--~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 3 YKLTLHPGSNPVEE--FTSIPHGVTSLDLSLNNLYSI-STVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EECCCCTTCCHHHH--HHTSCTTCCEEECTTSCGGGS-CHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred cccccccchHHHHH--HHhCCCCceEEEccCCCCChH-HHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence 57788888877765 555566699999999988763 22 2333333378899999998876666666654
Q ss_pred CCCcEEEccCCccccccccccc----CC-ccccEEEcccccccccCchhhhc-----CCcccccccccccCcceeccccc
Q 036049 137 TRLQFLYLGFNNFSGDLLGSIG----NL-RSLEAIYMSKCNFSGQITSSLRN-----LTELVVLDMAQNSYGGTMEIEGK 206 (517)
Q Consensus 137 ~~L~~L~Ls~n~i~~~~p~~~~----~l-~~L~~L~L~~n~l~~~~p~~l~~-----l~~L~~L~l~~N~l~~~~~~~~~ 206 (517)
++|++|+|++|.+++..+..+. .+ ++|++|++++|.+++..+..+.. .++|++|++++|.+++.. ...
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~--~~~ 157 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS--SDE 157 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC--HHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH--HHH
Confidence 8889999999988876666443 34 78899999999888666655443 358888888888876311 012
Q ss_pred cccccccccCC-CCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCC-CcccEEEccCCcCCCCCChhhhhcccccceec
Q 036049 207 VHKWLLDPNMQ-NLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGF-SKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVN 284 (517)
Q Consensus 207 ~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~ 284 (517)
++..+.. ++ +|++|++++|.+++..+.. ....+..+ ++|++|+|++|.+++.........
T Consensus 158 l~~~l~~--~~~~L~~L~Ls~n~l~~~~~~~--------l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~-------- 219 (362)
T 3goz_A 158 LIQILAA--IPANVNSLNLRGNNLASKNCAE--------LAKFLASIPASVTSLDLSANLLGLKSYAELAYI-------- 219 (362)
T ss_dssp HHHHHHT--SCTTCCEEECTTSCGGGSCHHH--------HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH--------
T ss_pred HHHHHhc--CCccccEeeecCCCCchhhHHH--------HHHHHHhCCCCCCEEECCCCCCChhHHHHHHHH--------
Confidence 3333333 44 8888888888887653210 00011234 488888888888873211110000
Q ss_pred cCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCc----ccccCCCCCCeEeCcCc
Q 036049 285 ASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIP----ASISNLKGLQVLNLHNN 360 (517)
Q Consensus 285 l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~Ls~N 360 (517)
+....+.|+.|++++|.+++..+ ..+..+++|+.|+|++|
T Consensus 220 ------------------------------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 220 ------------------------------------FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp ------------------------------------HHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred ------------------------------------HhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence 00012467788888888876543 34567899999999999
Q ss_pred ccccc-------CChhccCCCCCCeeeCCCCcccccCcccc
Q 036049 361 NLQGH-------IPSCLGNLTNLESLDLSNNKFSGRIPQQL 394 (517)
Q Consensus 361 ~l~~~-------~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 394 (517)
.+.+. ++..+..+++|+.||+++|++....+..+
T Consensus 264 ~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~ 304 (362)
T 3goz_A 264 IVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI 304 (362)
T ss_dssp HHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred CccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence 95533 33457788999999999999987644433
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=1.3e-22 Score=189.13 Aligned_cols=196 Identities=18% Similarity=0.257 Sum_probs=165.5
Q ss_pred CCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCC-CCCCCCchh-hhhcccCCcEEEccC-CCCcccCCccCCCC
Q 036049 60 TGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALND-FNSSEIQPE-IINLSCSLKLLDLRS-CGFWGKVPHSIGNF 136 (517)
Q Consensus 60 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~-~~~~~~~L~~L~Ls~-n~l~~~~p~~~~~l 136 (517)
..+++.|++++|.+++..+. .|.++++|++|++++|. ++. +++. +..+. +|++|++++ |.+.+..+..|.++
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~--~~~~l~~L~~L~l~~n~~l~~--i~~~~f~~l~-~L~~L~l~~~n~l~~i~~~~f~~l 104 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSH--AFSNLPNISRIYVSIDVTLQQ--LESHSFYNLS-KVTHIEIRNTRNLTYIDPDALKEL 104 (239)
T ss_dssp CTTCCEEEEESCCCSEECTT--TTTTCTTCCEEEEECCSSCCE--ECTTTEESCT-TCCEEEEEEETTCCEECTTSEECC
T ss_pred CCcccEEEEeCCcceEECHH--HccCCCCCcEEeCCCCCCcce--eCHhHcCCCc-CCcEEECCCCCCeeEcCHHHhCCC
Confidence 35799999999999987776 89999999999999997 876 6654 44555 999999999 99977777889999
Q ss_pred CCCcEEEccCCcccccccccccCCcccc---EEEcccc-cccccCchhhhcCCccc-ccccccccCcceecccccccccc
Q 036049 137 TRLQFLYLGFNNFSGDLLGSIGNLRSLE---AIYMSKC-NFSGQITSSLRNLTELV-VLDMAQNSYGGTMEIEGKVHKWL 211 (517)
Q Consensus 137 ~~L~~L~Ls~n~i~~~~p~~~~~l~~L~---~L~L~~n-~l~~~~p~~l~~l~~L~-~L~l~~N~l~~~~~~~~~~~~~~ 211 (517)
++|++|++++|.+++ +|. |..+++|+ +|++++| .+++..+..|.++++|+ +|++++|.++ .+|...
T Consensus 105 ~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-------~i~~~~ 175 (239)
T 2xwt_C 105 PLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-------SVQGYA 175 (239)
T ss_dssp TTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-------EECTTT
T ss_pred CCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-------ccCHhh
Confidence 999999999999995 666 88888888 9999999 99977777899999999 9999999997 677766
Q ss_pred ccccCCCCCeEeccCCc-ccccCCCCCCCCCCCCCCCCCCCC-CcccEEEccCCcCCCCCChhhhhcccccceeccCc
Q 036049 212 LDPNMQNLNALNLSHNL-LTGFDQHLVLLPGNNEEPRTGCGF-SKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASE 287 (517)
Q Consensus 212 ~~~~l~~L~~L~Ls~n~-l~~~~~~~~ll~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~ 287 (517)
+. .++|++|++++|+ ++++++. .+..+ ++|+.|++++|+++ .+|.. .+.+|+.|.+++
T Consensus 176 ~~--~~~L~~L~L~~n~~l~~i~~~------------~~~~l~~~L~~L~l~~N~l~-~l~~~---~~~~L~~L~l~~ 235 (239)
T 2xwt_C 176 FN--GTKLDAVYLNKNKYLTVIDKD------------AFGGVYSGPSLLDVSQTSVT-ALPSK---GLEHLKELIARN 235 (239)
T ss_dssp TT--TCEEEEEECTTCTTCCEECTT------------TTTTCSBCCSEEECTTCCCC-CCCCT---TCTTCSEEECTT
T ss_pred cC--CCCCCEEEcCCCCCcccCCHH------------HhhccccCCcEEECCCCccc-cCChh---HhccCceeeccC
Confidence 66 5789999999995 9887544 35778 89999999999998 67755 456666666654
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=4.9e-22 Score=192.36 Aligned_cols=62 Identities=27% Similarity=0.401 Sum_probs=36.6
Q ss_pred cCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccc
Q 036049 347 SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTG 412 (517)
Q Consensus 347 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 412 (517)
..+++|+.|++++|++++..+ +..+++|++|+|++|++++.. .+..+++|+.|++++|++++
T Consensus 170 ~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 170 ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 344566666666666653322 556666666666666666433 25666666666666666654
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=7.7e-22 Score=185.27 Aligned_cols=212 Identities=21% Similarity=0.230 Sum_probs=125.6
Q ss_pred CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccc
Q 036049 114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMA 193 (517)
Q Consensus 114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 193 (517)
..++++++++.+ ..+|..+. ++|+.|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l-~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSL-DSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCC-SSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCc-cccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 566777777777 45565554 567777777777776666667777777777777777766555555555555555555
Q ss_pred cccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhh
Q 036049 194 QNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKS 273 (517)
Q Consensus 194 ~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 273 (517)
+|.++ ++++. .+..+++|++|++++|+++ .+|.
T Consensus 92 ~n~l~--------------------------------~~~~~------------~~~~l~~L~~L~L~~N~l~-~~~~-- 124 (251)
T 3m19_A 92 NNQLA--------------------------------SLPLG------------VFDHLTQLDKLYLGGNQLK-SLPS-- 124 (251)
T ss_dssp TSCCC--------------------------------CCCTT------------TTTTCTTCCEEECCSSCCC-CCCT--
T ss_pred CCccc--------------------------------ccChh------------HhcccCCCCEEEcCCCcCC-CcCh--
Confidence 55443 32211 1244556666666666665 2221
Q ss_pred hhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCC
Q 036049 274 FLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQ 353 (517)
Q Consensus 274 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 353 (517)
..|..+++|+
T Consensus 125 ----------------------------------------------------------------------~~~~~l~~L~ 134 (251)
T 3m19_A 125 ----------------------------------------------------------------------GVFDRLTKLK 134 (251)
T ss_dssp ----------------------------------------------------------------------TTTTTCTTCC
T ss_pred ----------------------------------------------------------------------hHhccCCccc
Confidence 1234556677
Q ss_pred eEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCCCCCcCCcc------CCCc
Q 036049 354 VLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIPQGKQFATF------DNTS 427 (517)
Q Consensus 354 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l------~~~~ 427 (517)
.|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|++|++++|++++...+...+..+ ...+
T Consensus 135 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~ 214 (251)
T 3m19_A 135 ELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKD 214 (251)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC
T ss_pred EEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceee
Confidence 7777777777555556777777777777777777666666777777777888777777664432211111 1122
Q ss_pred ccCCCCCCCCCCCCCCCCC
Q 036049 428 FDGNSGLCGKPLSKGCESG 446 (517)
Q Consensus 428 ~~~Np~~c~~~~~~~c~~~ 446 (517)
..|+. .|+.+....|..+
T Consensus 215 ~~~~~-~~~~~~~~~C~~~ 232 (251)
T 3m19_A 215 GTGQN-LHESPDGVTCSDG 232 (251)
T ss_dssp --------CCGGGCBBTTS
T ss_pred ccCcc-cccCCCcCccCCC
Confidence 33443 5666666677765
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=5.8e-22 Score=195.58 Aligned_cols=106 Identities=15% Similarity=0.099 Sum_probs=51.3
Q ss_pred CCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCC-ccCCCCCCCcE-EEccCCcccccccccccCCcccc
Q 036049 87 VHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVP-HSIGNFTRLQF-LYLGFNNFSGDLLGSIGNLRSLE 164 (517)
Q Consensus 87 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~-L~Ls~n~i~~~~p~~~~~l~~L~ 164 (517)
+++++|+|++|+|+. +|+..+...++|++|+|++|.+.+.+| ..|.++++|++ +.+++|+++...|..|..+++|+
T Consensus 30 ~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 30 RNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp TTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred CCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence 345555555555544 444332222255555555555544333 23455555443 34444555544455555555555
Q ss_pred EEEcccccccccCchhhhcCCccccccccc
Q 036049 165 AIYMSKCNFSGQITSSLRNLTELVVLDMAQ 194 (517)
Q Consensus 165 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~ 194 (517)
+|++++|.+....+..+....++..|++.+
T Consensus 108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~ 137 (350)
T 4ay9_X 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137 (350)
T ss_dssp EEEEEEECCSSCCCCTTCCBSSCEEEEEES
T ss_pred cccccccccccCCchhhcccchhhhhhhcc
Confidence 555555555544444444444455555533
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=5.1e-21 Score=188.83 Aligned_cols=240 Identities=13% Similarity=0.102 Sum_probs=165.4
Q ss_pred EEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCccccccc-ccccCCccccE-EEc
Q 036049 91 WLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLL-GSIGNLRSLEA-IYM 168 (517)
Q Consensus 91 ~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p-~~~~~l~~L~~-L~L 168 (517)
+++.++++++. +|..+. +++++|+|++|+|+...+..|.++++|++|+|++|++.+.+| .+|.++++|++ +.+
T Consensus 13 ~v~C~~~~Lt~--iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 13 VFLCQESKVTE--IPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp EEEEESTTCCS--CCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred EEEecCCCCCc--cCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 34444555554 565542 389999999999976556689999999999999999876555 56889988775 667
Q ss_pred ccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccC-CcccccCCCCCCCCCCCCCCC
Q 036049 169 SKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSH-NLLTGFDQHLVLLPGNNEEPR 247 (517)
Q Consensus 169 ~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~ll~~~~~~~~ 247 (517)
+.|+++...|..|..+++|++|++++|++. .++...+. ...++..|++.+ +.+..++..
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-------~~~~~~~~-~~~~l~~l~l~~~~~i~~l~~~------------ 147 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-------HLPDVHKI-HSLQKVLLDIQDNINIHTIERN------------ 147 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCS-------SCCCCTTC-CBSSCEEEEEESCTTCCEECTT------------
T ss_pred cCCcccccCchhhhhccccccccccccccc-------cCCchhhc-ccchhhhhhhcccccccccccc------------
Confidence 789999888899999999999999999997 44433221 156677888865 567766443
Q ss_pred CCCCC-CcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchh
Q 036049 248 TGCGF-SKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPD 326 (517)
Q Consensus 248 ~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (517)
.+..+ ..++.|++++|+++ .+|...|.. .
T Consensus 148 ~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~-------------------------------------------------~ 177 (350)
T 4ay9_X 148 SFVGLSFESVILWLNKNGIQ-EIHNSAFNG-------------------------------------------------T 177 (350)
T ss_dssp SSTTSBSSCEEEECCSSCCC-EECTTSSTT-------------------------------------------------E
T ss_pred chhhcchhhhhhcccccccc-CCChhhccc-------------------------------------------------c
Confidence 23444 46899999999998 677554321 2
Q ss_pred hhhhhhCCC-CCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEec
Q 036049 327 ILAGIILSN-KSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNV 405 (517)
Q Consensus 327 ~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 405 (517)
.++.+++++ |.++...+..|..+++|+.|||++|+|+...+..| .+|+.|.+.++.-...+| .+..+++|+.+++
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l 253 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLP-TLEKLVALMEASL 253 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCC-CTTTCCSCCEEEC
T ss_pred chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCC-CchhCcChhhCcC
Confidence 344555554 44443333467788888888888888884433334 445555544443333565 4777888888888
Q ss_pred cCCc
Q 036049 406 SDNY 409 (517)
Q Consensus 406 ~~N~ 409 (517)
.++.
T Consensus 254 ~~~~ 257 (350)
T 4ay9_X 254 TYPS 257 (350)
T ss_dssp SCHH
T ss_pred CCCc
Confidence 7643
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=6.7e-23 Score=205.27 Aligned_cols=240 Identities=18% Similarity=0.238 Sum_probs=140.9
Q ss_pred ccccCCCCCEEEcCCCCCCCCCCchh----hhhcccCCcEEEccCCCC---cccCCccC-------CCCCCCcEEEccCC
Q 036049 82 SLYKLVHLEWLNLALNDFNSSEIQPE----IINLSCSLKLLDLRSCGF---WGKVPHSI-------GNFTRLQFLYLGFN 147 (517)
Q Consensus 82 ~l~~l~~L~~L~Ls~n~l~~~~~~~~----~~~~~~~L~~L~Ls~n~l---~~~~p~~~-------~~l~~L~~L~Ls~n 147 (517)
.+..+++|++|+|++|.++.. .+.. +..+. +|++|+|++|.+ .+.+|..+ ..+++|++|+|++|
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~-~~~~l~~~l~~~~-~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTE-AARWLSENIASKK-DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHH-HHHHHHHTTTTCT-TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHhcCCCccEEECCCCCCCHH-HHHHHHHHHHhCC-CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 445556666666666655432 1111 22333 666666666432 23334333 56666666666666
Q ss_pred cccc----cccccccCCccccEEEcccccccccCchhh----hcC---------CcccccccccccCcceeccccccc--
Q 036049 148 NFSG----DLLGSIGNLRSLEAIYMSKCNFSGQITSSL----RNL---------TELVVLDMAQNSYGGTMEIEGKVH-- 208 (517)
Q Consensus 148 ~i~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l----~~l---------~~L~~L~l~~N~l~~~~~~~~~~~-- 208 (517)
.+++ .+|..+..+++|++|+|++|.++...+..+ ..+ ++|++|++++|+++. +.++
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~-----~~~~~l 179 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN-----GSMKEW 179 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG-----GGHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc-----HHHHHH
Confidence 6665 355566666667777777766653333222 223 667777777776641 1222
Q ss_pred -cccccccCCCCCeEeccCCcccc-----cCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCC----CCCChhhhhccc
Q 036049 209 -KWLLDPNMQNLNALNLSHNLLTG-----FDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFT----GKLPSKSFLCWN 278 (517)
Q Consensus 209 -~~~~~~~l~~L~~L~Ls~n~l~~-----~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~----~~~p~~~~~~l~ 278 (517)
..+.. +++|++|++++|.++. ..+ ..+..+++|++|+|++|.++ +.+|. .+..
T Consensus 180 ~~~l~~--~~~L~~L~L~~n~l~~~g~~~l~~------------~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~-- 242 (386)
T 2ca6_A 180 AKTFQS--HRLLHTVKMVQNGIRPEGIEHLLL------------EGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKS-- 242 (386)
T ss_dssp HHHHHH--CTTCCEEECCSSCCCHHHHHHHHH------------TTGGGCTTCCEEECCSSCCHHHHHHHHHH-HGGG--
T ss_pred HHHHHh--CCCcCEEECcCCCCCHhHHHHHHH------------HHhhcCCCccEEECcCCCCCcHHHHHHHH-HHcc--
Confidence 22333 6677777777776662 111 02355667777777777764 12221 1111
Q ss_pred ccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCccc----Ccccc--cCCCCC
Q 036049 279 AMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGA----IPASI--SNLKGL 352 (517)
Q Consensus 279 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~p~~~--~~l~~L 352 (517)
.+.|+.|+|++|.+++. ++..+ +.+++|
T Consensus 243 ----------------------------------------------~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L 276 (386)
T 2ca6_A 243 ----------------------------------------------WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL 276 (386)
T ss_dssp ----------------------------------------------CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCC
T ss_pred ----------------------------------------------CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCe
Confidence 23455566666666543 45555 348999
Q ss_pred CeEeCcCccccc----cCChhc-cCCCCCCeeeCCCCcccccCc
Q 036049 353 QVLNLHNNNLQG----HIPSCL-GNLTNLESLDLSNNKFSGRIP 391 (517)
Q Consensus 353 ~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~Ls~N~l~~~~p 391 (517)
+.|+|++|.+++ .+|..+ .++++|++|+|++|++++..+
T Consensus 277 ~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 277 QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred EEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 999999999997 477777 668999999999999997653
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=1e-21 Score=192.74 Aligned_cols=246 Identities=17% Similarity=0.154 Sum_probs=179.0
Q ss_pred CCCEEEcCCCCCCCCCCchhhhhc--ccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCccccc-ccccccCCcccc
Q 036049 88 HLEWLNLALNDFNSSEIQPEIINL--SCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGD-LLGSIGNLRSLE 164 (517)
Q Consensus 88 ~L~~L~Ls~n~l~~~~~~~~~~~~--~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~-~p~~~~~l~~L~ 164 (517)
.++.++++++.+. +..+..+ . +++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|+
T Consensus 48 ~~~~l~l~~~~~~----~~~~~~~~~~-~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 48 LWQTLDLTGKNLH----PDVTGRLLSQ-GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TSSEEECTTCBCC----HHHHHHHHHT-TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hheeeccccccCC----HHHHHhhhhc-cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 4789999998874 4455555 4 899999999998666554 66789999999999998865 778888999999
Q ss_pred EEEcccccccccCchhhhcCCcccccccccc-cCcceeccccccccccccccCCCCCeEeccCC-cccccCCCCCCCCCC
Q 036049 165 AIYMSKCNFSGQITSSLRNLTELVVLDMAQN-SYGGTMEIEGKVHKWLLDPNMQNLNALNLSHN-LLTGFDQHLVLLPGN 242 (517)
Q Consensus 165 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~ll~~~ 242 (517)
+|++++|.+++..+..+..+++|++|++++| .+++. .++..+.. +++|++|++++| .+++...
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~-----~l~~~~~~--~~~L~~L~l~~~~~l~~~~~-------- 186 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF-----ALQTLLSS--CSRLDELNLSWCFDFTEKHV-------- 186 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH-----HHHHHHHH--CTTCCEEECCCCTTCCHHHH--------
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH-----HHHHHHhc--CCCCCEEcCCCCCCcChHHH--------
Confidence 9999999988778888888999999999988 56521 24444444 778888888887 6664210
Q ss_pred CCCCCCCCCCC-cccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccC
Q 036049 243 NEEPRTGCGFS-KLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAY 321 (517)
Q Consensus 243 ~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (517)
+..+..++ +|++|++++|.+.
T Consensus 187 ---~~~~~~l~~~L~~L~l~~~~~~------------------------------------------------------- 208 (336)
T 2ast_B 187 ---QVAVAHVSETITQLNLSGYRKN------------------------------------------------------- 208 (336)
T ss_dssp ---HHHHHHSCTTCCEEECCSCGGG-------------------------------------------------------
T ss_pred ---HHHHHhcccCCCEEEeCCCccc-------------------------------------------------------
Confidence 00124456 6777777766321
Q ss_pred CCchhhhhhhhCCCCCCc-ccCcccccCCCCCCeEeCcCcc-ccccCChhccCCCCCCeeeCCCCc-ccccCccccccCC
Q 036049 322 NKIPDILAGIILSNKSFD-GAIPASISNLKGLQVLNLHNNN-LQGHIPSCLGNLTNLESLDLSNNK-FSGRIPQQLVELT 398 (517)
Q Consensus 322 ~~~~~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~ 398 (517)
++ +.++..+..+++|+.|++++|. +++..+..+..+++|++|++++|. +.......+..++
T Consensus 209 ----------------~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~ 272 (336)
T 2ast_B 209 ----------------LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP 272 (336)
T ss_dssp ----------------SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCT
T ss_pred ----------------CCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCC
Confidence 11 1234455678899999999999 777788889999999999999995 4333334688899
Q ss_pred CCCEEeccCCcccccCCCC--CcC-CccCCCcccCCCC
Q 036049 399 FLAFFNVSDNYLTGLIPQG--KQF-ATFDNTSFDGNSG 433 (517)
Q Consensus 399 ~L~~L~l~~N~l~~~~p~~--~~~-~~l~~~~~~~Np~ 433 (517)
+|+.|++++| +++. ..+ ..++.+++.+|..
T Consensus 273 ~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n~l 305 (336)
T 2ast_B 273 TLKTLQVFGI-----VPDGTLQLLKEALPHLQINCSHF 305 (336)
T ss_dssp TCCEEECTTS-----SCTTCHHHHHHHSTTSEESCCCS
T ss_pred CCCEEeccCc-----cCHHHHHHHHhhCcceEEecccC
Confidence 9999999999 3332 122 3366777776654
No 93
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=2.2e-21 Score=201.54 Aligned_cols=115 Identities=20% Similarity=0.227 Sum_probs=74.7
Q ss_pred CCCCCCCCCCCCCc-----cccee-ecCCCCCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhh
Q 036049 36 MASWKPEEGNVDCC-----SWDGV-HCNKNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEII 109 (517)
Q Consensus 36 ~~~w~~~~~~~~~C-----~w~gv-~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 109 (517)
+.+|.. +.++| .|.|+ .|.. .+++.|+|++|.+++ +|. .+ +++|++|+|++|.++. +| .
T Consensus 33 l~~W~~---~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~--~l--~~~L~~L~Ls~N~l~~--ip-~-- 97 (571)
T 3cvr_A 33 WDKWEK---QALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPD--NL--PPQITVLEITQNALIS--LP-E-- 97 (571)
T ss_dssp HHHHHT---TCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCS--CC--CTTCSEEECCSSCCSC--CC-C--
T ss_pred HHHHhc---cCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCH--hH--cCCCCEEECcCCCCcc--cc-c--
Confidence 345654 45667 69988 6753 478888888888876 443 33 3678888888888774 56 1
Q ss_pred hcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEccccccc
Q 036049 110 NLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFS 174 (517)
Q Consensus 110 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~ 174 (517)
..++|++|++++|.+++ +|. |.+ +|++|+|++|.+++ +|. .+++|++|+|++|.++
T Consensus 98 -~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~ 153 (571)
T 3cvr_A 98 -LPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT 153 (571)
T ss_dssp -CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred -ccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC
Confidence 22377777777777754 555 544 67777777776664 444 4566666666666655
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=4.9e-21 Score=174.41 Aligned_cols=178 Identities=19% Similarity=0.226 Sum_probs=123.9
Q ss_pred CCcccceeecCCCCCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhh-hcccCCcEEEccCCCC
Q 036049 47 DCCSWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEII-NLSCSLKLLDLRSCGF 125 (517)
Q Consensus 47 ~~C~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~l 125 (517)
..|.|.++.|... +++. +|. . -.++|++|++++|.++. +++..+ .+. +|++|++++|.+
T Consensus 5 C~C~~~~v~c~~~------------~l~~-~p~--~--~~~~l~~L~l~~n~l~~--~~~~~~~~l~-~L~~L~l~~n~l 64 (208)
T 2o6s_A 5 CSCSGTTVECYSQ------------GRTS-VPT--G--IPAQTTYLDLETNSLKS--LPNGVFDELT-SLTQLYLGGNKL 64 (208)
T ss_dssp CEEETTEEECCSS------------CCSS-CCS--C--CCTTCSEEECCSSCCCC--CCTTTTTTCT-TCSEEECCSSCC
T ss_pred CEECCCEEEecCC------------CccC-CCC--C--CCCCCcEEEcCCCccCc--CChhhhcccc-cCcEEECCCCcc
Confidence 3488999999642 2322 222 1 23577888888888775 555443 444 788888888887
Q ss_pred cccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceecccc
Q 036049 126 WGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEG 205 (517)
Q Consensus 126 ~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~ 205 (517)
.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.++
T Consensus 65 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~------- 137 (208)
T 2o6s_A 65 QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK------- 137 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-------
T ss_pred CccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-------
Confidence 6555556777888888888888887665666777888888888888887666666777888888888888776
Q ss_pred ccccc-cccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChh
Q 036049 206 KVHKW-LLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSK 272 (517)
Q Consensus 206 ~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 272 (517)
.++.. +.. +++|++|++++|.+.+ .+++|+.|+++.|+++|.+|..
T Consensus 138 ~~~~~~~~~--l~~L~~L~l~~N~~~~-------------------~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 138 SVPDGVFDR--LTSLQYIWLHDNPWDC-------------------TCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp CCCTTTTTT--CTTCCEEECCSCCBCC-------------------CTTTTHHHHHHHHHCTTTBBCT
T ss_pred eeCHHHhcc--CCCccEEEecCCCeec-------------------CCCCHHHHHHHHHhCCceeecc
Confidence 33333 333 7788888888886653 3567788888888888887754
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=2.8e-20 Score=169.33 Aligned_cols=152 Identities=21% Similarity=0.203 Sum_probs=107.6
Q ss_pred CEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcc
Q 036049 90 EWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMS 169 (517)
Q Consensus 90 ~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~ 169 (517)
+.++.+++.++. +|..+. ++|++|++++|.+.+..+..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus 10 ~~v~c~~~~l~~--~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQGRTS--VPTGIP---AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSCCSS--CCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCccC--CCCCCC---CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 466777777765 554432 378888888888876666667888888888888888886666667888888888888
Q ss_pred cccccccCchhhhcCCcccccccccccCcceeccccccccc-cccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCC
Q 036049 170 KCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKW-LLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRT 248 (517)
Q Consensus 170 ~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~ 248 (517)
+|.+++..+..|..+++|++|++++|.++ .++.. +.. +++|++|++++|.++++++. .
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~--l~~L~~L~l~~N~l~~~~~~------------~ 143 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQ-------SLPDGVFDK--LTQLKDLRLYQNQLKSVPDG------------V 143 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-------CCCTTTTTT--CTTCCEEECCSSCCSCCCTT------------T
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCc-------ccCHhHhcc--CCcCCEEECCCCccceeCHH------------H
Confidence 88888666666777888888888888776 33332 333 67777777777777765433 2
Q ss_pred CCCCCcccEEEccCCcCCC
Q 036049 249 GCGFSKLRIIDLSDNRFTG 267 (517)
Q Consensus 249 ~~~l~~L~~L~Ls~N~l~~ 267 (517)
+..+++|++|++++|.+.+
T Consensus 144 ~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 144 FDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp TTTCTTCCEEECCSCCBCC
T ss_pred hccCCCccEEEecCCCeec
Confidence 4566777777777776653
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=2.8e-20 Score=193.32 Aligned_cols=195 Identities=19% Similarity=0.227 Sum_probs=116.3
Q ss_pred CCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEE
Q 036049 88 HLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIY 167 (517)
Q Consensus 88 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~ 167 (517)
+|++|++++|.+++ +|..++ ++|++|+|++|.+. .+| ..+++|++|++++|.|++ +|. |.+ +|++|+
T Consensus 60 ~L~~L~Ls~n~L~~--lp~~l~---~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLSS--LPDNLP---PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCSC--CCSCCC---TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred CccEEEeCCCCCCc--cCHhHc---CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence 66666666666655 555442 26666666666664 455 335666666666666664 444 443 666666
Q ss_pred cccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCC
Q 036049 168 MSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPR 247 (517)
Q Consensus 168 L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~ 247 (517)
|++|.+++ +|. .+++|++|++++|.++ .+|. . +++|++|++++|.+++++.
T Consensus 127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-------~lp~---~--l~~L~~L~Ls~N~L~~lp~------------- 177 (571)
T 3cvr_A 127 VDNNQLTM-LPE---LPALLEYINADNNQLT-------MLPE---L--PTSLEVLSVRNNQLTFLPE------------- 177 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCS-------CCCC---C--CTTCCEEECCSSCCSCCCC-------------
T ss_pred CCCCcCCC-CCC---cCccccEEeCCCCccC-------cCCC---c--CCCcCEEECCCCCCCCcch-------------
Confidence 66666664 443 4566666666666655 2333 1 4556666666666555321
Q ss_pred CCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhh
Q 036049 248 TGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDI 327 (517)
Q Consensus 248 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (517)
+. ++|++|+|++|.|+ .+|. +.. +
T Consensus 178 -l~--~~L~~L~Ls~N~L~-~lp~--~~~--~------------------------------------------------ 201 (571)
T 3cvr_A 178 -LP--ESLEALDVSTNLLE-SLPA--VPV--R------------------------------------------------ 201 (571)
T ss_dssp -CC--TTCCEEECCSSCCS-SCCC--CC----------------------------------------------------
T ss_pred -hh--CCCCEEECcCCCCC-chhh--HHH--h------------------------------------------------
Confidence 11 45666666666555 4442 100 0
Q ss_pred hhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCC
Q 036049 328 LAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELT 398 (517)
Q Consensus 328 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 398 (517)
-+...+.|+.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..++
T Consensus 202 -----------------L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 202 -----------------NHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp -----------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred -----------------hhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 0011233588999999998 6788777889999999999999888887776653
No 97
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.83 E-value=1.9e-22 Score=213.72 Aligned_cols=317 Identities=13% Similarity=0.045 Sum_probs=175.6
Q ss_pred CcEEEEEcCCCCceee----eCCCcccccCCCCCEEEcCCCCCCCC---CCchhhhhcccCCcEEEccCCCCcccCCccC
Q 036049 61 GHVVKLNLSHSCLFGS----INSSSSLYKLVHLEWLNLALNDFNSS---EIQPEIINLSCSLKLLDLRSCGFWGKVPHSI 133 (517)
Q Consensus 61 ~~l~~L~Ls~n~l~~~----~~~~~~l~~l~~L~~L~Ls~n~l~~~---~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~ 133 (517)
.++++|+|++|.+++. ++. .+..+++|++|++++|.+++. .++..+..+. +|++|++++|.+.+ +|..+
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~--~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~~~~-l~~~~ 239 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHE--LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR-SLVSVKVGDFEILE-LVGFF 239 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHH--HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCT-TCCEEECSSCBGGG-GHHHH
T ss_pred CCCCEEECccccccCcchhHHHH--HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCC-CCcEEeccCccHHH-HHHHH
Confidence 5799999999987654 222 456788999999999988631 1233334454 89999999988744 55666
Q ss_pred CCCCCCcEEEccCCccc---ccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceec--------
Q 036049 134 GNFTRLQFLYLGFNNFS---GDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTME-------- 202 (517)
Q Consensus 134 ~~l~~L~~L~Ls~n~i~---~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~-------- 202 (517)
..+++|++|+++..... ...+..+..+++|+.|+++++... .+|..+..+++|++|++++|.+++...
T Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~ 318 (592)
T 3ogk_B 240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP 318 (592)
T ss_dssp HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT
T ss_pred hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc
Confidence 66777777777643221 112223344444444444443222 333444444444444444444321000
Q ss_pred -----------cccccccccccccCCCCCeEeccC-----------CcccccCCCCCCCCCCCCCCCCCCCCCcccEEEc
Q 036049 203 -----------IEGKVHKWLLDPNMQNLNALNLSH-----------NLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDL 260 (517)
Q Consensus 203 -----------~~~~~~~~~~~~~l~~L~~L~Ls~-----------n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~L 260 (517)
..+.++..... +++|++|++++ |.+++.... .....+++|++|++
T Consensus 319 ~L~~L~L~~~~~~~~l~~~~~~--~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~L~~L~l 385 (592)
T 3ogk_B 319 NLEVLETRNVIGDRGLEVLAQY--CKQLKRLRIERGADEQGMEDEEGLVSQRGLI-----------ALAQGCQELEYMAV 385 (592)
T ss_dssp TCCEEEEEGGGHHHHHHHHHHH--CTTCCEEEEECCCCSSTTSSTTCCCCHHHHH-----------HHHHHCTTCSEEEE
T ss_pred CCCEEeccCccCHHHHHHHHHh--CCCCCEEEeecCccccccccccCccCHHHHH-----------HHHhhCccCeEEEe
Confidence 00011211122 45555555552 333321000 00123556666666
Q ss_pred cCCcCCCCCChhhhhcccccceeccCccc---ccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCC
Q 036049 261 SDNRFTGKLPSKSFLCWNAMKIVNASELR---YLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKS 337 (517)
Q Consensus 261 s~N~l~~~~p~~~~~~l~~L~~L~l~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 337 (517)
+.|.+++..+......+++|+.|+++.+. .+..... . .+ ........++|+.|+++.|.
T Consensus 386 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~-----~------------~~-~~~~~~~~~~L~~L~L~~~~ 447 (592)
T 3ogk_B 386 YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL-----D------------NG-VRSLLIGCKKLRRFAFYLRQ 447 (592)
T ss_dssp EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC-----H------------HH-HHHHHHHCTTCCEEEEECCG
T ss_pred ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH-----H------------HH-HHHHHHhCCCCCEEEEecCC
Confidence 66665543333333335556665554211 1110000 0 00 00001125678888887543
Q ss_pred --CcccCccccc-CCCCCCeEeCcCccccc-cCChhccCCCCCCeeeCCCCccccc-CccccccCCCCCEEeccCCcccc
Q 036049 338 --FDGAIPASIS-NLKGLQVLNLHNNNLQG-HIPSCLGNLTNLESLDLSNNKFSGR-IPQQLVELTFLAFFNVSDNYLTG 412 (517)
Q Consensus 338 --l~~~~p~~~~-~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~~ 412 (517)
+++..+..+. .+++|+.|+|++|++++ .++..+..+++|++|+|++|.+++. ++..+..+++|++|++++|+++.
T Consensus 448 ~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 448 GGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp GGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred CCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 6655444443 47889999999999875 3455567889999999999998754 44445678999999999999875
Q ss_pred c
Q 036049 413 L 413 (517)
Q Consensus 413 ~ 413 (517)
.
T Consensus 528 ~ 528 (592)
T 3ogk_B 528 T 528 (592)
T ss_dssp T
T ss_pred H
Confidence 4
No 98
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=7e-23 Score=217.01 Aligned_cols=344 Identities=13% Similarity=0.060 Sum_probs=231.6
Q ss_pred cEEEEEcCCCCceee--eCCCcccccCCCCCEEEcCCCCCCCCC---CchhhhhcccCCcEEEccCCCCc----ccCCcc
Q 036049 62 HVVKLNLSHSCLFGS--INSSSSLYKLVHLEWLNLALNDFNSSE---IQPEIINLSCSLKLLDLRSCGFW----GKVPHS 132 (517)
Q Consensus 62 ~l~~L~Ls~n~l~~~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~~~~~~~~~L~~L~Ls~n~l~----~~~p~~ 132 (517)
++++|+|+++.-... ++. ....+++|++|+|++|.+++.. ++.....+. +|++|++++|.+. +.++..
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~-~L~~L~L~~n~~~~~~~~~l~~~ 215 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLS--IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT-SLEVLNFYMTEFAKISPKDLETI 215 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHH--HHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCC-CCCEEECTTCCCSSCCHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHH--HHhhCCCCCEEECccccccCcchhHHHHHHhcCC-CccEEEeeccCCCccCHHHHHHH
Confidence 499999999862111 111 3347899999999999986642 222333444 9999999999986 334455
Q ss_pred CCCCCCCcEEEccCCcccccccccccCCccccEEEccccccc---ccCchhhhcCCcccccccccccCcceecccccccc
Q 036049 133 IGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFS---GQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHK 209 (517)
Q Consensus 133 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 209 (517)
+.++++|++|++++|.+.+ ++..+..+++|++|+++..... ...+..+..+++|+.|+++++... .+|.
T Consensus 216 ~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-------~l~~ 287 (592)
T 3ogk_B 216 ARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-------EMPI 287 (592)
T ss_dssp HHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-------TGGG
T ss_pred HhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-------HHHH
Confidence 6789999999999999985 7788999999999999864433 234456778899999999886443 5666
Q ss_pred ccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCc--
Q 036049 210 WLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASE-- 287 (517)
Q Consensus 210 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~-- 287 (517)
.+.. +++|++|++++|.+++.... ..+..+++|++|+++ +.+...........+++|+.|++++
T Consensus 288 ~~~~--~~~L~~L~Ls~~~l~~~~~~-----------~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~ 353 (592)
T 3ogk_B 288 LFPF--AAQIRKLDLLYALLETEDHC-----------TLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGA 353 (592)
T ss_dssp GGGG--GGGCCEEEETTCCCCHHHHH-----------HHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCC
T ss_pred HHhh--cCCCcEEecCCCcCCHHHHH-----------HHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCc
Confidence 6665 89999999999997653211 012568899999998 5554333334556678888888884
Q ss_pred --------ccccccccCCCcccchhhhccceeeee--cCcccc----CCCchhhhhhhhCC----CCCCccc-----Ccc
Q 036049 288 --------LRYLQDVLSPSGKLLMTTYDYLLTMNI--KGRMMA----YNKIPDILAGIILS----NKSFDGA-----IPA 344 (517)
Q Consensus 288 --------~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~L~~L~Ls----~n~l~~~-----~p~ 344 (517)
+..+...... ........+..+.+ ...... .....++|+.|+++ .|.+++. ++.
T Consensus 354 ~~~~~~~~~~~~~~~~~~---~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~ 430 (592)
T 3ogk_B 354 DEQGMEDEEGLVSQRGLI---ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS 430 (592)
T ss_dssp CSSTTSSTTCCCCHHHHH---HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH
T ss_pred cccccccccCccCHHHHH---HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH
Confidence 2222211000 00001111222222 111110 11124568888886 6677753 344
Q ss_pred cccCCCCCCeEeCcCcc--ccccCChhcc-CCCCCCeeeCCCCccccc-CccccccCCCCCEEeccCCccccc-CCCC-C
Q 036049 345 SISNLKGLQVLNLHNNN--LQGHIPSCLG-NLTNLESLDLSNNKFSGR-IPQQLVELTFLAFFNVSDNYLTGL-IPQG-K 418 (517)
Q Consensus 345 ~~~~l~~L~~L~Ls~N~--l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~~~-~p~~-~ 418 (517)
.+..+++|+.|++++|. +++..+..+. .+++|++|+|++|++++. ++..+..+++|++|++++|++++. ++.. .
T Consensus 431 ~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 510 (592)
T 3ogk_B 431 LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVT 510 (592)
T ss_dssp HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHH
T ss_pred HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHH
Confidence 46678999999998643 6655555544 489999999999999863 455567889999999999998754 2221 3
Q ss_pred cCCccCCCcccCCCC
Q 036049 419 QFATFDNTSFDGNSG 433 (517)
Q Consensus 419 ~~~~l~~~~~~~Np~ 433 (517)
.++.++.+++++|..
T Consensus 511 ~l~~L~~L~ls~n~i 525 (592)
T 3ogk_B 511 KLPSLRYLWVQGYRA 525 (592)
T ss_dssp HCSSCCEEEEESCBC
T ss_pred hcCccCeeECcCCcC
Confidence 467788889999873
No 99
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=1.2e-19 Score=167.66 Aligned_cols=159 Identities=20% Similarity=0.178 Sum_probs=111.6
Q ss_pred CCCCcccceeecCCCCCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCC
Q 036049 45 NVDCCSWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCG 124 (517)
Q Consensus 45 ~~~~C~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 124 (517)
....|.|+++.|... .++ .+|. .+ .++|++|+|++|.+++. .|..+..+. +|++|+|++|.
T Consensus 15 ~~~~Cs~~~v~c~~~------------~l~-~ip~--~~--~~~L~~L~Ls~n~i~~~-~~~~~~~l~-~L~~L~L~~N~ 75 (229)
T 3e6j_A 15 SQCSCSGTTVDCRSK------------RHA-SVPA--GI--PTNAQILYLHDNQITKL-EPGVFDSLI-NLKELYLGSNQ 75 (229)
T ss_dssp TTCEEETTEEECTTS------------CCS-SCCS--CC--CTTCSEEECCSSCCCCC-CTTTTTTCT-TCCEEECCSSC
T ss_pred CCCEEeCCEeEccCC------------CcC-ccCC--CC--CCCCCEEEcCCCccCcc-CHHHhhCcc-CCcEEECCCCC
Confidence 467899999999632 232 2232 22 26778888888887763 344444555 78888888888
Q ss_pred CcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccc
Q 036049 125 FWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIE 204 (517)
Q Consensus 125 l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~ 204 (517)
+....+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|.++ .+|..+..+++|++|++++|+++
T Consensus 76 l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~------ 148 (229)
T 3e6j_A 76 LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK------ 148 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC------
T ss_pred CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC------
Confidence 75555556777888888888888887666666777888888888888887 66777778888888888888776
Q ss_pred ccccc-ccccccCCCCCeEeccCCccccc
Q 036049 205 GKVHK-WLLDPNMQNLNALNLSHNLLTGF 232 (517)
Q Consensus 205 ~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~ 232 (517)
.++. .+.. +++|++|++++|.+...
T Consensus 149 -~~~~~~~~~--l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 149 -SIPHGAFDR--LSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp -CCCTTTTTT--CTTCCEEECTTSCBCTT
T ss_pred -ccCHHHHhC--CCCCCEEEeeCCCccCC
Confidence 3443 2333 77888888888877754
No 100
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.81 E-value=9.1e-21 Score=204.01 Aligned_cols=205 Identities=13% Similarity=0.102 Sum_probs=96.9
Q ss_pred chHhHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCCCCCCCCcccceeecCCCCCcEEEEEcCCCCceeeeCCCccccc
Q 036049 6 HDDERSALLQFKESRISGDFYAWKFDCRPTMASWKPEEGNVDCCSWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYK 85 (517)
Q Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~C~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~ 85 (517)
.+.++.+|+++..+..... . ..-..|... .+..+.|.+..+.. ++++.|+|.+|.+.... .
T Consensus 130 ~~~~~~~l~~~~~~~~~~~-~-------~~~~~~~~~--~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~~-~------ 190 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSK-T-------AKKQQPTGD--STPSGTATNSAVST--PLTPKIELFANGKDEAN-Q------ 190 (727)
T ss_dssp --CCCHHHHHHHHHHHHHH-T-------TC--------------------------------------------------
T ss_pred cccchhhhhhhhhhccccc-C-------cccCCCcCC--CCccccCCCceecC--CccceEEeeCCCCCcch-h------
Confidence 4567889999987754322 1 123456442 35567798888754 58999999999886532 2
Q ss_pred CCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccE
Q 036049 86 LVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEA 165 (517)
Q Consensus 86 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~ 165 (517)
..|+.++|+.|.|.. ++++.|.+ ...|+.|..+++|+.|+|++|.+. .+|..+.++++|++
T Consensus 191 -~~l~~l~Ls~~~i~~----------------~~~~~n~~-~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 191 -ALLQHKKLSQYSIDE----------------DDDIENRM-VMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTR 251 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSC
T ss_pred -hHhhcCccCcccccC----------------ccccccce-ecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCE
Confidence 235566666665543 34444555 355666777777777777777777 56666667777888
Q ss_pred EEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCC
Q 036049 166 IYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEE 245 (517)
Q Consensus 166 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~ 245 (517)
|+|++|.|+ .+|..|.++++|++|+|++|.++ .+|..+.. +++|++|+|++|.|+.++.
T Consensus 252 L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-------~lp~~~~~--l~~L~~L~L~~N~l~~lp~----------- 310 (727)
T 4b8c_D 252 LYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-------SLPAELGS--CFQLKYFYFFDNMVTTLPW----------- 310 (727)
T ss_dssp CBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-------SCCSSGGG--GTTCSEEECCSSCCCCCCS-----------
T ss_pred EEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-------ccChhhcC--CCCCCEEECCCCCCCccCh-----------
Confidence 888887777 67777777778888888887776 56666666 7788888888887775532
Q ss_pred CCCCCCCCcccEEEccCCcCCCCCCh
Q 036049 246 PRTGCGFSKLRIIDLSDNRFTGKLPS 271 (517)
Q Consensus 246 ~~~~~~l~~L~~L~Ls~N~l~~~~p~ 271 (517)
.+..+++|++|+|++|.+++.+|.
T Consensus 311 --~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 311 --EFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp --STTSCTTCCCEECTTSCCCSHHHH
T ss_pred --hhhcCCCccEEeCCCCccCCCChH
Confidence 247788888888888888866554
No 101
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.80 E-value=1.2e-22 Score=215.25 Aligned_cols=352 Identities=14% Similarity=0.076 Sum_probs=163.2
Q ss_pred CcEEEEEcCCCCceeeeCCCcccc-cCCCCCEEEcCCC-CCCCCCCchhhhhcccCCcEEEccCCCCcccCCcc----CC
Q 036049 61 GHVVKLNLSHSCLFGSINSSSSLY-KLVHLEWLNLALN-DFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHS----IG 134 (517)
Q Consensus 61 ~~l~~L~Ls~n~l~~~~~~~~~l~-~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~----~~ 134 (517)
.++++|+|+++.+++.... .+. .+++|++|+|++| .++...++..+..+. +|++|++++|.+.+..+.. ..
T Consensus 105 ~~L~~L~L~~~~~~~~~~~--~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLE--LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCR-NLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp TTCCEEEEESCBCCHHHHH--HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCT-TCCEEECTTCEEECCCGGGGGGSCT
T ss_pred CCCCeEEeeCcEEcHHHHH--HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCC-CCCEEeCcCCccCCcchHHHHHHhh
Confidence 3567777777766544333 343 4667777777766 333211222222344 7777777777654433222 23
Q ss_pred CCCCCcEEEccCCc--cccc-ccccccCCccccEEEcccccccccCchhhhcCCcccccccccccC-------cce----
Q 036049 135 NFTRLQFLYLGFNN--FSGD-LLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSY-------GGT---- 200 (517)
Q Consensus 135 ~l~~L~~L~Ls~n~--i~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l-------~~~---- 200 (517)
.+++|++|++++|. +... ++..+..+++|++|++++|...+.++..+..+++|++|+++.+.. .+.
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 55677777777765 2211 111223457777777777632223556666666676666543321 000
Q ss_pred ------------e-ccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCC
Q 036049 201 ------------M-EIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTG 267 (517)
Q Consensus 201 ------------~-~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 267 (517)
. ...+.++..+.. +++|++|++++|.+++.... ..+..+++|++|++++| +..
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~--~~~L~~L~L~~~~l~~~~l~-----------~~~~~~~~L~~L~l~~~-~~~ 327 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYSV--CSRLTTLNLSYATVQSYDLV-----------KLLCQCPKLQRLWVLDY-IED 327 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHHH--HTTCCEEECTTCCCCHHHHH-----------HHHTTCTTCCEEEEEGG-GHH
T ss_pred hcCCCcccccCCcccchhhHHHHHHh--hCCCCEEEccCCCCCHHHHH-----------HHHhcCCCcCEEeCcCc-cCH
Confidence 0 000122222223 67788888887776542110 01235677777777776 332
Q ss_pred CCChhhhhcccccceeccCcc--------cccccccCCCcccchhhhccceeeee--cCccc----cCCCchhhhhhhhC
Q 036049 268 KLPSKSFLCWNAMKIVNASEL--------RYLQDVLSPSGKLLMTTYDYLLTMNI--KGRMM----AYNKIPDILAGIIL 333 (517)
Q Consensus 268 ~~p~~~~~~l~~L~~L~l~~~--------~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~L~L 333 (517)
.........+++|+.|++..+ ..+...... ........+..+.. ..... ......++|+.|++
T Consensus 328 ~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~---~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L 404 (594)
T 2p1m_B 328 AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV---SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRL 404 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH---HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH---HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEe
Confidence 211222334666777766221 111100000 00000001111100 11000 00011345566666
Q ss_pred C--C----CCCcc-----cCcccccCCCCCCeEeCcCccccccCChhccC-CCCCCeeeCCCCcccccCcccc-ccCCCC
Q 036049 334 S--N----KSFDG-----AIPASISNLKGLQVLNLHNNNLQGHIPSCLGN-LTNLESLDLSNNKFSGRIPQQL-VELTFL 400 (517)
Q Consensus 334 s--~----n~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L 400 (517)
+ + +.+++ .++..+..+++|+.|+|++ .+++..+..+.. +++|++|+|++|.+++..+..+ ..+++|
T Consensus 405 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L 483 (594)
T 2p1m_B 405 CIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSL 483 (594)
T ss_dssp EESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTC
T ss_pred ecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCc
Confidence 5 2 33331 1111234455666666655 444333333433 5666666666666654433333 445666
Q ss_pred CEEeccCCcccccCCC--CCcCCccCCCcccCCCC
Q 036049 401 AFFNVSDNYLTGLIPQ--GKQFATFDNTSFDGNSG 433 (517)
Q Consensus 401 ~~L~l~~N~l~~~~p~--~~~~~~l~~~~~~~Np~ 433 (517)
++|++++|++++..+. ...++.++.+++++|+.
T Consensus 484 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 484 RKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 6666666666432221 12344555555655543
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=4.1e-19 Score=170.28 Aligned_cols=123 Identities=22% Similarity=0.361 Sum_probs=53.4
Q ss_pred CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccc
Q 036049 114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMA 193 (517)
Q Consensus 114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 193 (517)
+|++|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ + ..+..+++|++|+++
T Consensus 47 ~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 47 SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLE 120 (291)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECT
T ss_pred cccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECC
Confidence 44444444444421 22 24444444444444444443222 4444444444444444442 1 124444444444444
Q ss_pred cccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCC
Q 036049 194 QNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFT 266 (517)
Q Consensus 194 ~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (517)
+|.+++ + ..+.. +++|++|++++|.+++.. .+..+++|++|++++|.++
T Consensus 121 ~n~i~~-------~-~~l~~--l~~L~~L~l~~n~l~~~~--------------~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 121 HNGISD-------I-NGLVH--LPQLESLYLGNNKITDIT--------------VLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp TSCCCC-------C-GGGGG--CTTCCEEECCSSCCCCCG--------------GGGGCTTCSEEECCSSCCC
T ss_pred CCcCCC-------C-hhhcC--CCCCCEEEccCCcCCcch--------------hhccCCCCCEEEccCCccc
Confidence 444431 1 11222 455555555555554431 1244555555555555554
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=9.1e-19 Score=161.72 Aligned_cols=156 Identities=18% Similarity=0.172 Sum_probs=137.4
Q ss_pred CCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEc
Q 036049 89 LEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYM 168 (517)
Q Consensus 89 L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L 168 (517)
-+.++.+++.++. +|..+. ++|++|+|++|.+.+..|..|.++++|++|+|++|.++...+..|..+++|++|+|
T Consensus 21 ~~~v~c~~~~l~~--ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 21 GTTVDCRSKRHAS--VPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TTEEECTTSCCSS--CCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEeEccCCCcCc--cCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 4578889998877 776554 49999999999998888999999999999999999999766677899999999999
Q ss_pred ccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCC
Q 036049 169 SKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRT 248 (517)
Q Consensus 169 ~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~ 248 (517)
++|.+++..+..|..+++|++|++++|+++ .+|..+.. +++|++|++++|+++++++. .
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-------~lp~~~~~--l~~L~~L~L~~N~l~~~~~~------------~ 154 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-------ELPRGIER--LTHLTHLALDQNQLKSIPHG------------A 154 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------SCCTTGGG--CTTCSEEECCSSCCCCCCTT------------T
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCccc-------ccCccccc--CCCCCEEECCCCcCCccCHH------------H
Confidence 999999777778899999999999999998 77877776 99999999999999987543 3
Q ss_pred CCCCCcccEEEccCCcCCCCCC
Q 036049 249 GCGFSKLRIIDLSDNRFTGKLP 270 (517)
Q Consensus 249 ~~~l~~L~~L~Ls~N~l~~~~p 270 (517)
+..+++|+.|++++|.+.+..+
T Consensus 155 ~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTTCTTCCEEECTTSCBCTTBG
T ss_pred HhCCCCCCEEEeeCCCccCCcc
Confidence 5788999999999999986544
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=6.7e-19 Score=168.78 Aligned_cols=172 Identities=22% Similarity=0.316 Sum_probs=139.4
Q ss_pred CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCc
Q 036049 61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQ 140 (517)
Q Consensus 61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 140 (517)
.+++.|++++|.+... + .+..+++|++|++++|.+++ +++ +..+. +|++|++++|.+.+ +| .+..+++|+
T Consensus 46 ~~L~~L~l~~~~i~~~--~--~~~~l~~L~~L~L~~n~l~~--~~~-l~~l~-~L~~L~l~~n~l~~-~~-~l~~l~~L~ 115 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV--Q--GIQYLPNVTKLFLNGNKLTD--IKP-LANLK-NLGWLFLDENKVKD-LS-SLKDLKKLK 115 (291)
T ss_dssp HTCCEEECTTSCCCCC--T--TGGGCTTCCEEECCSSCCCC--CGG-GTTCT-TCCEEECCSSCCCC-GG-GGTTCTTCC
T ss_pred CcccEEEccCCCcccC--h--hHhcCCCCCEEEccCCccCC--Ccc-cccCC-CCCEEECCCCcCCC-Ch-hhccCCCCC
Confidence 4688999999988754 2 57889999999999999987 555 66666 99999999999854 44 488999999
Q ss_pred EEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCC
Q 036049 141 FLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLN 220 (517)
Q Consensus 141 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~ 220 (517)
+|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++ ++. +.. +++|+
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~-------~~~-l~~--l~~L~ 181 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-------IVP-LAG--LTKLQ 181 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-------CGG-GTT--CTTCC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc-------chh-hcC--CCccC
Confidence 999999999853 5688899999999999999854 578889999999999998873 333 444 89999
Q ss_pred eEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCCh
Q 036049 221 ALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPS 271 (517)
Q Consensus 221 ~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 271 (517)
+|++++|.+++++. +..+++|+.|++++|+++ ..|.
T Consensus 182 ~L~L~~N~i~~l~~--------------l~~l~~L~~L~l~~n~i~-~~~~ 217 (291)
T 1h6t_A 182 NLYLSKNHISDLRA--------------LAGLKNLDVLELFSQECL-NKPI 217 (291)
T ss_dssp EEECCSSCCCBCGG--------------GTTCTTCSEEEEEEEEEE-CCCE
T ss_pred EEECCCCcCCCChh--------------hccCCCCCEEECcCCccc-CCcc
Confidence 99999999887532 367889999999999987 3443
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=3.3e-19 Score=163.58 Aligned_cols=157 Identities=19% Similarity=0.235 Sum_probs=103.9
Q ss_pred cccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCC
Q 036049 188 VVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTG 267 (517)
Q Consensus 188 ~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 267 (517)
+.+++++|.++ .+|..+ ...+++|++++|.+++.++.. .+..+++|++|++++|.++
T Consensus 14 ~~l~~s~n~l~-------~iP~~~----~~~~~~L~L~~N~l~~~~~~~-----------~~~~l~~L~~L~L~~N~i~- 70 (220)
T 2v70_A 14 TTVDCSNQKLN-------KIPEHI----PQYTAELRLNNNEFTVLEATG-----------IFKKLPQLRKINFSNNKIT- 70 (220)
T ss_dssp TEEECCSSCCS-------SCCSCC----CTTCSEEECCSSCCCEECCCC-----------CGGGCTTCCEEECCSSCCC-
T ss_pred CEeEeCCCCcc-------cCccCC----CCCCCEEEcCCCcCCccCchh-----------hhccCCCCCEEECCCCcCC-
Confidence 46777777776 566544 335677777777777664321 2456777777777777776
Q ss_pred CCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCccccc
Q 036049 268 KLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASIS 347 (517)
Q Consensus 268 ~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~ 347 (517)
.++...|.. +..|+.|++++|.+++..+..|.
T Consensus 71 ~i~~~~~~~------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~ 102 (220)
T 2v70_A 71 DIEEGAFEG------------------------------------------------ASGVNEILLTSNRLENVQHKMFK 102 (220)
T ss_dssp EECTTTTTT------------------------------------------------CTTCCEEECCSSCCCCCCGGGGT
T ss_pred EECHHHhCC------------------------------------------------CCCCCEEECCCCccCccCHhHhc
Confidence 333322222 33455566666777766666677
Q ss_pred CCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccccCC
Q 036049 348 NLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGLIP 415 (517)
Q Consensus 348 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 415 (517)
.+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|++|++++|++++..+
T Consensus 103 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 103 GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 77777777777777776667777777777777777777776667777777777777777777776544
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=6.6e-19 Score=161.57 Aligned_cols=127 Identities=14% Similarity=0.118 Sum_probs=65.3
Q ss_pred EEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchh-hhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEE
Q 036049 65 KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPE-IINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLY 143 (517)
Q Consensus 65 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 143 (517)
.+++++|.++. +|. .+ ...+++|+|++|.++.. .+.. +..+. +|++|+|++|.+.+..+..|.++++|++|+
T Consensus 15 ~l~~s~n~l~~-iP~--~~--~~~~~~L~L~~N~l~~~-~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 15 TVDCSNQKLNK-IPE--HI--PQYTAELRLNNNEFTVL-EATGIFKKLP-QLRKINFSNNKITDIEEGAFEGASGVNEIL 87 (220)
T ss_dssp EEECCSSCCSS-CCS--CC--CTTCSEEECCSSCCCEE-CCCCCGGGCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred EeEeCCCCccc-Ccc--CC--CCCCCEEEcCCCcCCcc-CchhhhccCC-CCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence 45555666653 332 22 22445666666666542 1222 23333 566666666665554444555555566666
Q ss_pred ccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCc
Q 036049 144 LGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYG 198 (517)
Q Consensus 144 Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~ 198 (517)
|++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|++++|+++
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 142 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCC
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCC
Confidence 6655555555555555555555555555555444444444444444444444443
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=1.9e-19 Score=178.21 Aligned_cols=93 Identities=24% Similarity=0.271 Sum_probs=47.8
Q ss_pred cccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCcccc---ccCCCCCEEeccCCcccccCCCC-CcC
Q 036049 345 SISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQL---VELTFLAFFNVSDNYLTGLIPQG-KQF 420 (517)
Q Consensus 345 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~l~~N~l~~~~p~~-~~~ 420 (517)
.|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..| ..+++|+.|+|++|+|++.++.. ..+
T Consensus 107 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l 186 (361)
T 2xot_A 107 LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL 186 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHS
T ss_pred HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhc
Confidence 34455556666666666655555555666666666666666653322223 34556666666666665433221 111
Q ss_pred Cc--cCCCcccCCCCCCCC
Q 036049 421 AT--FDNTSFDGNSGLCGK 437 (517)
Q Consensus 421 ~~--l~~~~~~~Np~~c~~ 437 (517)
.. +..+++.+||+.|+|
T Consensus 187 ~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 187 PAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp CHHHHTTEECCSSCEECCH
T ss_pred cHhhcceEEecCCCccCCc
Confidence 11 234556666666665
No 108
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=2.5e-21 Score=202.16 Aligned_cols=192 Identities=20% Similarity=0.225 Sum_probs=135.9
Q ss_pred CCCCCCcEEEccCCcccccccccccCCccccEEEccccc-------------ccccCchhhhcCCcccccc-cccccCcc
Q 036049 134 GNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCN-------------FSGQITSSLRNLTELVVLD-MAQNSYGG 199 (517)
Q Consensus 134 ~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~-------------l~~~~p~~l~~l~~L~~L~-l~~N~l~~ 199 (517)
..+++|+.|+|++|.++ .+|..++.+++|++|++++|. +.+..|..++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 56788888888888887 778888888888888887775 4566777888888888888 6666432
Q ss_pred eeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccc
Q 036049 200 TMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNA 279 (517)
Q Consensus 200 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~ 279 (517)
+|+.+.+++|.++.+++ ..|+.|++++|.++ .+|. +..
T Consensus 424 ------------------~L~~l~l~~n~i~~l~~------------------~~L~~L~Ls~n~l~-~lp~--~~~--- 461 (567)
T 1dce_A 424 ------------------DLRSKFLLENSVLKMEY------------------ADVRVLHLAHKDLT-VLCH--LEQ--- 461 (567)
T ss_dssp ------------------HHHHHHHHHHHHHHHHH------------------TTCSEEECTTSCCS-SCCC--GGG---
T ss_pred ------------------hhhhhhhhcccccccCc------------------cCceEEEecCCCCC-CCcC--ccc---
Confidence 23344555555554321 13666666666666 3442 222
Q ss_pred cceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcC
Q 036049 280 MKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHN 359 (517)
Q Consensus 280 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 359 (517)
+..|+.|++++|.++ .+|..++.+++|+.|+|++
T Consensus 462 ---------------------------------------------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~ 495 (567)
T 1dce_A 462 ---------------------------------------------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASD 495 (567)
T ss_dssp ---------------------------------------------GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCS
T ss_pred ---------------------------------------------cccCcEeecCccccc-ccchhhhcCCCCCEEECCC
Confidence 233455556666666 5666777788888888888
Q ss_pred ccccccCChhccCCCCCCeeeCCCCcccccC-ccccccCCCCCEEeccCCcccccCCCC
Q 036049 360 NNLQGHIPSCLGNLTNLESLDLSNNKFSGRI-PQQLVELTFLAFFNVSDNYLTGLIPQG 417 (517)
Q Consensus 360 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~l~~N~l~~~~p~~ 417 (517)
|+|++ +| .++.+++|+.|+|++|+|++.. |..+..+++|+.|++++|++++.+|..
T Consensus 496 N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 496 NALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp SCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred CCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 88884 56 6788888888888888888665 788888888888888888888777654
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=1.4e-18 Score=159.39 Aligned_cols=134 Identities=20% Similarity=0.213 Sum_probs=63.4
Q ss_pred CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccc
Q 036049 114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMA 193 (517)
Q Consensus 114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 193 (517)
+|++|++++|.+.+..+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|.++...+..|.++++|++|+++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 34444444444433333344444444444444444444444444444444444444444443333334444444444444
Q ss_pred cccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCC
Q 036049 194 QNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTG 267 (517)
Q Consensus 194 ~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 267 (517)
+|.+++ ..+..+.. +++|++|+|++|.++++++. .+..+++|++|++++|.+..
T Consensus 113 ~N~l~~------~~~~~~~~--l~~L~~L~L~~N~l~~~~~~------------~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 113 ANKINC------LRVDAFQD--LHNLNLLSLYDNKLQTIAKG------------TFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SSCCCC------CCTTTTTT--CTTCCEEECCSSCCSCCCTT------------TTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCE------eCHHHcCC--CCCCCEEECCCCcCCEECHH------------HHhCCCCCCEEEeCCCCcCC
Confidence 444441 11222222 55555555555555554332 23556667777777776653
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=6.6e-19 Score=158.74 Aligned_cols=155 Identities=16% Similarity=0.210 Sum_probs=120.6
Q ss_pred ccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCc
Q 036049 82 SLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLR 161 (517)
Q Consensus 82 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~ 161 (517)
....+++|++|++++|.++. +| .+..+. +|++|++++|.+. .+..+..+++|++|++++|.+++..+..|+.++
T Consensus 39 ~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~-~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 112 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVTD--LT-GIEYAH-NIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT 112 (197)
T ss_dssp BHHHHHTCCEEEEESSCCSC--CT-TGGGCT-TCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred ChhhcCCccEEeccCCCccC--hH-HHhcCC-CCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence 34567788888888888875 56 566666 8888888888663 334688888899999999888877788888888
Q ss_pred cccEEEcccccccccCchhhhcCCccccccccccc-CcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCC
Q 036049 162 SLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNS-YGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLP 240 (517)
Q Consensus 162 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~ 240 (517)
+|++|++++|.+++..+..+..+++|++|++++|. ++ .++ .+.. +++|++|++++|.++++.
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-------~~~-~l~~--l~~L~~L~l~~n~i~~~~------- 175 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-------DIM-PLKT--LPELKSLNIQFDGVHDYR------- 175 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-------CCG-GGGG--CSSCCEEECTTBCCCCCT-------
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-------ccH-hhcC--CCCCCEEECCCCCCcChH-------
Confidence 89999999998887778888888899999998887 54 444 3444 888999999999888753
Q ss_pred CCCCCCCCCCCCCcccEEEccCCcCC
Q 036049 241 GNNEEPRTGCGFSKLRIIDLSDNRFT 266 (517)
Q Consensus 241 ~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (517)
.+..+++|++|++++|++.
T Consensus 176 -------~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 176 -------GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp -------TGGGCSSCCEEEECBC---
T ss_pred -------HhccCCCCCEEEeeCcccC
Confidence 2367888999999999875
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=2.4e-18 Score=180.71 Aligned_cols=146 Identities=23% Similarity=0.334 Sum_probs=69.8
Q ss_pred cEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcE
Q 036049 62 HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQF 141 (517)
Q Consensus 62 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 141 (517)
+|+.|++++|.+... + .+..+++|+.|+|++|.+.+ +++ +..+. +|++|+|++|.+.+ +| .+..+++|++
T Consensus 44 ~L~~L~l~~n~i~~l-~---~l~~l~~L~~L~Ls~N~l~~--~~~-l~~l~-~L~~L~Ls~N~l~~-l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 44 SIDQIIANNSDIKSV-Q---GIQYLPNVTKLFLNGNKLTD--IKP-LTNLK-NLGWLFLDENKIKD-LS-SLKDLKKLKS 113 (605)
T ss_dssp TCCCCBCTTCCCCCC-T---TGGGCTTCCEEECTTSCCCC--CGG-GGGCT-TCCEEECCSSCCCC-CT-TSTTCTTCCE
T ss_pred CCCEEECcCCCCCCC-h---HHccCCCCCEEEeeCCCCCC--Chh-hccCC-CCCEEECcCCCCCC-Ch-hhccCCCCCE
Confidence 445555555554322 1 34455555555555555544 333 33333 55555555555532 22 3555555555
Q ss_pred EEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCe
Q 036049 142 LYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNA 221 (517)
Q Consensus 142 L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~ 221 (517)
|+|++|.+.+ + ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+ ++. +.. +++|+.
T Consensus 114 L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-------~~~-l~~--l~~L~~ 179 (605)
T 1m9s_A 114 LSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-------IVP-LAG--LTKLQN 179 (605)
T ss_dssp EECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC-------CGG-GTT--CTTCCE
T ss_pred EEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC-------chh-hcc--CCCCCE
Confidence 5555555553 1 2345555555555555555432 344555555555555555442 111 222 455555
Q ss_pred EeccCCcccc
Q 036049 222 LNLSHNLLTG 231 (517)
Q Consensus 222 L~Ls~n~l~~ 231 (517)
|+|++|.|++
T Consensus 180 L~Ls~N~i~~ 189 (605)
T 1m9s_A 180 LYLSKNHISD 189 (605)
T ss_dssp EECCSSCCCB
T ss_pred EECcCCCCCC
Confidence 5555555544
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=1.4e-18 Score=159.30 Aligned_cols=133 Identities=17% Similarity=0.217 Sum_probs=104.8
Q ss_pred CCCCEEEcCCCCCCCCCCch-hhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccE
Q 036049 87 VHLEWLNLALNDFNSSEIQP-EIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEA 165 (517)
Q Consensus 87 ~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~ 165 (517)
++|++|++++|.++. +++ .+..+. +|++|+|++|.+.+..|..|.++++|++|+|++|.++...+..|..+++|++
T Consensus 32 ~~l~~L~l~~n~i~~--i~~~~~~~l~-~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 32 ETITEIRLEQNTIKV--IPPGAFSPYK-KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108 (220)
T ss_dssp TTCCEEECCSSCCCE--ECTTSSTTCT-TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCEEECCCCcCCC--cCHhHhhCCC-CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCE
Confidence 578888888888876 555 344444 8888888888887777888888888888888888888665666788888888
Q ss_pred EEcccccccccCchhhhcCCcccccccccccCcceecccccccc-ccccccCCCCCeEeccCCcccc
Q 036049 166 IYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHK-WLLDPNMQNLNALNLSHNLLTG 231 (517)
Q Consensus 166 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~~~~~~l~~L~~L~Ls~n~l~~ 231 (517)
|+|++|.+++..|..|..+++|++|++++|.++ .++. .+.. +++|++|++++|.+..
T Consensus 109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~--l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-------TIAKGTFSP--LRAIQTMHLAQNPFIC 166 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-------CCCTTTTTT--CTTCCEEECCSSCEEC
T ss_pred EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC-------EECHHHHhC--CCCCCEEEeCCCCcCC
Confidence 888888888777888888888888888888887 3333 3444 7888888888888865
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=4.7e-18 Score=178.46 Aligned_cols=188 Identities=22% Similarity=0.323 Sum_probs=153.4
Q ss_pred EEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEE
Q 036049 63 VVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFL 142 (517)
Q Consensus 63 l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 142 (517)
+..+.+..+.+.... .+..+++|+.|++++|.+.. ++ .+..+. +|++|+|++|.+.+..| +..+++|+.|
T Consensus 23 l~~l~l~~~~i~~~~----~~~~L~~L~~L~l~~n~i~~--l~-~l~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L 92 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAV----TQNELNSIDQIIANNSDIKS--VQ-GIQYLP-NVTKLFLNGNKLTDIKP--LTNLKNLGWL 92 (605)
T ss_dssp HHHHHTTCSCTTSEE----CHHHHTTCCCCBCTTCCCCC--CT-TGGGCT-TCCEEECTTSCCCCCGG--GGGCTTCCEE
T ss_pred HHHHhccCCCccccc----chhcCCCCCEEECcCCCCCC--Ch-HHccCC-CCCEEEeeCCCCCCChh--hccCCCCCEE
Confidence 445566666665544 45788999999999999987 54 566666 99999999999966544 8999999999
Q ss_pred EccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeE
Q 036049 143 YLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNAL 222 (517)
Q Consensus 143 ~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L 222 (517)
+|++|.+.+ ++ .+..+++|++|+|++|.+.+ + ..+..+++|+.|+|++|.+++ + ..+.. +++|+.|
T Consensus 93 ~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-------l-~~l~~--l~~L~~L 158 (605)
T 1m9s_A 93 FLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-------I-TVLSR--LTKLDTL 158 (605)
T ss_dssp ECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC-------C-GGGGS--CTTCSEE
T ss_pred ECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCC-------c-hhhcc--cCCCCEE
Confidence 999999985 33 79999999999999999985 3 468999999999999999983 3 34444 9999999
Q ss_pred eccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCccccc
Q 036049 223 NLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYL 291 (517)
Q Consensus 223 ~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l 291 (517)
+|++|.+++.++ +..+++|+.|+|++|.+++ +| .+..+++|+.|+++++...
T Consensus 159 ~Ls~N~l~~~~~--------------l~~l~~L~~L~Ls~N~i~~-l~--~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 159 SLEDNQISDIVP--------------LAGLTKLQNLYLSKNHISD-LR--ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp ECCSSCCCCCGG--------------GTTCTTCCEEECCSSCCCB-CG--GGTTCTTCSEEECCSEEEE
T ss_pred ECcCCcCCCchh--------------hccCCCCCEEECcCCCCCC-Ch--HHccCCCCCEEEccCCcCc
Confidence 999999998654 3778999999999999984 54 3778888888888875443
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=3e-18 Score=169.66 Aligned_cols=176 Identities=19% Similarity=0.161 Sum_probs=136.4
Q ss_pred EEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhh--hcccCCcEEEccCCCCcccCCccCCCCCCCcEE
Q 036049 65 KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEII--NLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFL 142 (517)
Q Consensus 65 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~--~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 142 (517)
.+++++++++. +|. .+ ...+++|+|++|.++. +++..+ .+. +|++|+|++|.|.+..+..|.++++|++|
T Consensus 22 ~l~c~~~~l~~-iP~--~~--~~~l~~L~Ls~N~l~~--l~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L 93 (361)
T 2xot_A 22 ILSCSKQQLPN-VPQ--SL--PSYTALLDLSHNNLSR--LRAEWTPTRLT-NLHSLLLSHNHLNFISSEAFVPVPNLRYL 93 (361)
T ss_dssp EEECCSSCCSS-CCS--SC--CTTCSEEECCSSCCCE--ECTTSSSSCCT-TCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred EEEeCCCCcCc-cCc--cC--CCCCCEEECCCCCCCc--cChhhhhhccc-ccCEEECCCCcCCccChhhccCCCCCCEE
Confidence 56777777764 343 33 2468999999999987 565554 455 99999999999987777889999999999
Q ss_pred EccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceecccccccccccc--ccCCCCC
Q 036049 143 YLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLD--PNMQNLN 220 (517)
Q Consensus 143 ~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~--~~l~~L~ 220 (517)
+|++|+++...+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|.++ .+|..++. ..+++|+
T Consensus 94 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-------~l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 94 DLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-------RFPVELIKDGNKLPKLM 166 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-------SCCGGGTC----CTTCC
T ss_pred ECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-------eeCHHHhcCcccCCcCC
Confidence 99999999777778999999999999999999888888999999999999999887 55555431 1278888
Q ss_pred eEeccCCcccccCCCCCCCCCCCCCCCCCCCCCc--ccEEEccCCcCCC
Q 036049 221 ALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSK--LRIIDLSDNRFTG 267 (517)
Q Consensus 221 ~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~--L~~L~Ls~N~l~~ 267 (517)
+|+|++|+|++++.. .+..++. ++.|+|++|.+..
T Consensus 167 ~L~L~~N~l~~l~~~------------~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 167 LLDLSSNKLKKLPLT------------DLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp EEECCSSCCCCCCHH------------HHHHSCHHHHTTEECCSSCEEC
T ss_pred EEECCCCCCCccCHH------------HhhhccHhhcceEEecCCCccC
Confidence 888888888876432 2244554 4778888888763
No 115
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.76 E-value=1.7e-20 Score=198.76 Aligned_cols=309 Identities=14% Similarity=0.063 Sum_probs=168.2
Q ss_pred CcEEEEEcCCC-Cceee-eCCCcccccCCCCCEEEcCCCCCCCCCCchhhh---hcccCCcEEEccCCC--Ccc-cCCcc
Q 036049 61 GHVVKLNLSHS-CLFGS-INSSSSLYKLVHLEWLNLALNDFNSSEIQPEII---NLSCSLKLLDLRSCG--FWG-KVPHS 132 (517)
Q Consensus 61 ~~l~~L~Ls~n-~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~---~~~~~L~~L~Ls~n~--l~~-~~p~~ 132 (517)
.++++|+|++| .++.. ++. .+.++++|++|+|++|.+++. .+..+. ...++|++|++++|. +.. .++..
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~i~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l 206 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLAA--IAATCRNLKELDLRESDVDDV-SGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL 206 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHHH--HHHHCTTCCEEECTTCEEECC-CGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHH
T ss_pred CCCcEEeCCCcCCCCHHHHHH--HHHhCCCCCEEeCcCCccCCc-chHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHH
Confidence 57888888877 44321 222 344678888888888876553 222222 122377888887775 211 11111
Q ss_pred CCCCCCCcEEEccCC-cccccccccccCCccccEEEccccc--------------------------cc----ccCchhh
Q 036049 133 IGNFTRLQFLYLGFN-NFSGDLLGSIGNLRSLEAIYMSKCN--------------------------FS----GQITSSL 181 (517)
Q Consensus 133 ~~~l~~L~~L~Ls~n-~i~~~~p~~~~~l~~L~~L~L~~n~--------------------------l~----~~~p~~l 181 (517)
+..+++|++|++++| .+. .++..+..+++|++|+++.+. +. ..++..+
T Consensus 207 ~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~ 285 (594)
T 2p1m_B 207 VTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVY 285 (594)
T ss_dssp HHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGH
T ss_pred HHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHH
Confidence 234577777777777 333 355555556666666544331 11 1233333
Q ss_pred hcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEc-
Q 036049 182 RNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDL- 260 (517)
Q Consensus 182 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~L- 260 (517)
..+++|++|++++|.+++. .+...+.. +++|++|++++| ++...... ....+++|++|++
T Consensus 286 ~~~~~L~~L~L~~~~l~~~-----~l~~~~~~--~~~L~~L~l~~~-~~~~~l~~-----------l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 286 SVCSRLTTLNLSYATVQSY-----DLVKLLCQ--CPKLQRLWVLDY-IEDAGLEV-----------LASTCKDLRELRVF 346 (594)
T ss_dssp HHHTTCCEEECTTCCCCHH-----HHHHHHTT--CTTCCEEEEEGG-GHHHHHHH-----------HHHHCTTCCEEEEE
T ss_pred HhhCCCCEEEccCCCCCHH-----HHHHHHhc--CCCcCEEeCcCc-cCHHHHHH-----------HHHhCCCCCEEEEe
Confidence 4567777777777765421 12222223 666777777666 32110000 0012444555554
Q ss_pred ---------------------------------cCCcCCCCCChhhhhcccccceeccCc-----ccccccccCCCcccc
Q 036049 261 ---------------------------------SDNRFTGKLPSKSFLCWNAMKIVNASE-----LRYLQDVLSPSGKLL 302 (517)
Q Consensus 261 ---------------------------------s~N~l~~~~p~~~~~~l~~L~~L~l~~-----~~~l~~~~~~~~~~~ 302 (517)
+.|.+++..+......+++|+.|+++. +..+.....
T Consensus 347 ~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~------ 420 (594)
T 2p1m_B 347 PSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL------ 420 (594)
T ss_dssp CSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCT------
T ss_pred cCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCch------
Confidence 444443222222222334444444431 111100000
Q ss_pred hhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccC-CCCCCeEeCcCccccccCChhc-cCCCCCCeee
Q 036049 303 MTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISN-LKGLQVLNLHNNNLQGHIPSCL-GNLTNLESLD 380 (517)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~ 380 (517)
. .+ ........++|+.|++++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|++|+
T Consensus 421 ~-----------~~-~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~ 487 (594)
T 2p1m_B 421 D-----------IG-FGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLE 487 (594)
T ss_dssp H-----------HH-HHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEE
T ss_pred h-----------hH-HHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEE
Confidence 0 00 000011245788999977 676655555554 8899999999999976655555 6789999999
Q ss_pred CCCCcccccCcc-ccccCCCCCEEeccCCccc
Q 036049 381 LSNNKFSGRIPQ-QLVELTFLAFFNVSDNYLT 411 (517)
Q Consensus 381 Ls~N~l~~~~p~-~l~~l~~L~~L~l~~N~l~ 411 (517)
|++|.+++..+. ....+++|++|++++|+++
T Consensus 488 L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 488 IRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp EESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred CcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 999999654433 3455889999999999885
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=4.6e-21 Score=200.17 Aligned_cols=217 Identities=20% Similarity=0.137 Sum_probs=153.5
Q ss_pred ccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccc
Q 036049 84 YKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSL 163 (517)
Q Consensus 84 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L 163 (517)
..+++|+.|+|++|.++. +|+.+..+. +|++|++++|......|.. +..+.+.+..|..++.+++|
T Consensus 346 ~~~~~L~~L~Ls~n~L~~--Lp~~i~~l~-~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L 411 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTV--LQSELESCK-ELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTL 411 (567)
T ss_dssp STTTTSSSCCCCHHHHHH--HHHHHHHHH-HHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHHh--hHHHHHHHH-HHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhc
Confidence 445666666666666654 666666666 6666666544321111110 11122455778888899999
Q ss_pred cEEE-cccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCC
Q 036049 164 EAIY-MSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGN 242 (517)
Q Consensus 164 ~~L~-L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~ 242 (517)
+.|+ ++.|.+ ..|+.+.+++|.++ .++ ...|+.|++++|.+++++.
T Consensus 412 ~~L~~l~~n~~-----------~~L~~l~l~~n~i~-------~l~-------~~~L~~L~Ls~n~l~~lp~-------- 458 (567)
T 1dce_A 412 KAVDPMRAAYL-----------DDLRSKFLLENSVL-------KME-------YADVRVLHLAHKDLTVLCH-------- 458 (567)
T ss_dssp HHHCGGGHHHH-----------HHHHHHHHHHHHHH-------HHH-------HTTCSEEECTTSCCSSCCC--------
T ss_pred ccCcchhhccc-----------chhhhhhhhccccc-------ccC-------ccCceEEEecCCCCCCCcC--------
Confidence 9988 666643 35667777778765 333 2358889999998887532
Q ss_pred CCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCC
Q 036049 243 NEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYN 322 (517)
Q Consensus 243 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (517)
+..+++|+.|+|++|.++ .+|.. +..
T Consensus 459 ------~~~l~~L~~L~Ls~N~l~-~lp~~-~~~---------------------------------------------- 484 (567)
T 1dce_A 459 ------LEQLLLVTHLDLSHNRLR-ALPPA-LAA---------------------------------------------- 484 (567)
T ss_dssp ------GGGGTTCCEEECCSSCCC-CCCGG-GGG----------------------------------------------
T ss_pred ------ccccccCcEeecCccccc-ccchh-hhc----------------------------------------------
Confidence 477889999999999998 77753 333
Q ss_pred CchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccC-ChhccCCCCCCeeeCCCCcccccCcc---ccccCC
Q 036049 323 KIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHI-PSCLGNLTNLESLDLSNNKFSGRIPQ---QLVELT 398 (517)
Q Consensus 323 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~ 398 (517)
++.|+.|+|++|.+++ +| .+..+++|+.|+|++|+|++.. |..+..+++|+.|+|++|++++..|. .+..++
T Consensus 485 --l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp 560 (567)
T 1dce_A 485 --LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 560 (567)
T ss_dssp --CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCT
T ss_pred --CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCc
Confidence 3456667778888885 66 7899999999999999999776 99999999999999999999966543 234489
Q ss_pred CCCEEec
Q 036049 399 FLAFFNV 405 (517)
Q Consensus 399 ~L~~L~l 405 (517)
+|+.|++
T Consensus 561 ~L~~L~l 567 (567)
T 1dce_A 561 SVSSILT 567 (567)
T ss_dssp TCSEEEC
T ss_pred ccCccCC
Confidence 9999874
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=5.3e-18 Score=152.76 Aligned_cols=151 Identities=17% Similarity=0.216 Sum_probs=128.4
Q ss_pred CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCc
Q 036049 61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQ 140 (517)
Q Consensus 61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 140 (517)
.+++.|++++|.++. ++ .+..+++|++|++++|.++. + +.+..+. +|++|++++|.+.+..+..|+.+++|+
T Consensus 44 ~~L~~L~l~~n~i~~-l~---~l~~l~~L~~L~l~~n~~~~--~-~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 44 NSLTYITLANINVTD-LT---GIEYAHNIKDLTINNIHATN--Y-NPISGLS-NLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HTCCEEEEESSCCSC-CT---TGGGCTTCSEEEEESCCCSC--C-GGGTTCT-TCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred CCccEEeccCCCccC-hH---HHhcCCCCCEEEccCCCCCc--c-hhhhcCC-CCCEEEeECCccCcccChhhcCCCCCC
Confidence 478999999999973 33 58899999999999998765 3 4667766 999999999999887888999999999
Q ss_pred EEEccCCcccccccccccCCccccEEEccccc-ccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCC
Q 036049 141 FLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCN-FSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNL 219 (517)
Q Consensus 141 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L 219 (517)
+|++++|.+++..|..++.+++|++|++++|. ++ .+| .+..+++|++|++++|.++ .++ .+.. +++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~-------~~~-~l~~--l~~L 183 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH-------DYR-GIED--FPKL 183 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC-------CCT-TGGG--CSSC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc-------ChH-Hhcc--CCCC
Confidence 99999999998889999999999999999998 66 555 6899999999999999997 343 3444 8999
Q ss_pred CeEeccCCcccc
Q 036049 220 NALNLSHNLLTG 231 (517)
Q Consensus 220 ~~L~Ls~n~l~~ 231 (517)
++|++++|++.+
T Consensus 184 ~~L~l~~N~i~~ 195 (197)
T 4ezg_A 184 NQLYAFSQTIGG 195 (197)
T ss_dssp CEEEECBC----
T ss_pred CEEEeeCcccCC
Confidence 999999999865
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=1.8e-18 Score=163.22 Aligned_cols=64 Identities=30% Similarity=0.486 Sum_probs=35.9
Q ss_pred ccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCccccc
Q 036049 346 ISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTGL 413 (517)
Q Consensus 346 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 413 (517)
+..+++|+.|+|++|++++ ++ .+..+++|++|+|++|++++. ..+..+++|+.|++++|++++.
T Consensus 124 l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 124 LIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp GTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred hcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 3445556666666666553 22 355556666666666666543 4455566666666666666544
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=3.9e-18 Score=160.88 Aligned_cols=170 Identities=22% Similarity=0.293 Sum_probs=138.2
Q ss_pred cEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcE
Q 036049 62 HVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQF 141 (517)
Q Consensus 62 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 141 (517)
+++.++++.+.+++.. .+..+++|++|++++|.++. ++ .+..+. +|++|++++|.+.+..+ +..+++|++
T Consensus 20 ~l~~l~l~~~~i~~~~----~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~-~L~~L~L~~N~i~~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV----SQKELSGVQNFNGDNSNIQS--LA-GMQFFT-NLKELHLSHNQISDLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHTCSCTTSEE----CHHHHTTCSEEECTTSCCCC--CT-TGGGCT-TCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred HHHHHHhcCCCccccc----chhhcCcCcEEECcCCCccc--ch-HHhhCC-CCCEEECCCCccCCChh--hccCCCCCE
Confidence 4566778888887543 57889999999999999987 55 566666 99999999999965444 999999999
Q ss_pred EEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCe
Q 036049 142 LYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNA 221 (517)
Q Consensus 142 L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~ 221 (517)
|++++|++++ +|. +.. ++|++|++++|.+++. +.+..+++|++|++++|++++ ++ .+.. +++|++
T Consensus 90 L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~-------~~-~l~~--l~~L~~ 154 (263)
T 1xeu_A 90 LSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS-------IV-MLGF--LSKLEV 154 (263)
T ss_dssp EECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB-------CG-GGGG--CTTCCE
T ss_pred EECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC-------Ch-HHcc--CCCCCE
Confidence 9999999995 443 333 8999999999999853 368999999999999999983 33 3444 899999
Q ss_pred EeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCCh
Q 036049 222 LNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPS 271 (517)
Q Consensus 222 L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 271 (517)
|++++|.+++.. .+..+++|+.|++++|.+++ .|.
T Consensus 155 L~L~~N~i~~~~--------------~l~~l~~L~~L~l~~N~~~~-~~~ 189 (263)
T 1xeu_A 155 LDLHGNEITNTG--------------GLTRLKKVNWIDLTGQKCVN-EPV 189 (263)
T ss_dssp EECTTSCCCBCT--------------TSTTCCCCCEEEEEEEEEEC-CCE
T ss_pred EECCCCcCcchH--------------HhccCCCCCEEeCCCCcccC-Ccc
Confidence 999999998861 34788999999999999984 353
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=1.9e-17 Score=148.45 Aligned_cols=113 Identities=21% Similarity=0.304 Sum_probs=79.8
Q ss_pred hhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEec
Q 036049 326 DILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNV 405 (517)
Q Consensus 326 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 405 (517)
+.|+.|++++|.+++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|++..|..|..+++|++|++
T Consensus 54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence 34555556666666666677788888888888888888777777888888888888888888888888888888888888
Q ss_pred cCCcccccCCCCCcCCccCCCcccCCCCCCCCC
Q 036049 406 SDNYLTGLIPQGKQFATFDNTSFDGNSGLCGKP 438 (517)
Q Consensus 406 ~~N~l~~~~p~~~~~~~l~~~~~~~Np~~c~~~ 438 (517)
++|++++..+-......+....+.++...|+.|
T Consensus 134 ~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 134 ASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp TTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred CCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 888888766532111122233344555555443
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=1.8e-16 Score=142.01 Aligned_cols=128 Identities=21% Similarity=0.251 Sum_probs=108.3
Q ss_pred EEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchh--hhhcccCCcEEEccCCCCcccCCccCCCCCCCcEE
Q 036049 65 KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPE--IINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFL 142 (517)
Q Consensus 65 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~--~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 142 (517)
.+++++++++ .+|. .+. .+|++|++++|.++. +++. +..+. +|++|+|++|.+++..|..|.++++|++|
T Consensus 12 ~l~~s~~~l~-~ip~--~~~--~~l~~L~l~~n~i~~--~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 12 TVDCTGRGLK-EIPR--DIP--LHTTELLLNDNELGR--ISSDGLFGRLP-HLVKLELKRNQLTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp EEECTTSCCS-SCCS--CCC--TTCSEEECCSCCCCS--BCCSCSGGGCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred EEEcCCCCcC-cCcc--CCC--CCCCEEECCCCcCCc--cCCccccccCC-CCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence 5566677775 3444 333 389999999999987 5543 55666 99999999999988889999999999999
Q ss_pred EccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcce
Q 036049 143 YLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGT 200 (517)
Q Consensus 143 ~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 200 (517)
+|++|++++..+..|..+++|++|+|++|.+++..|..|..+++|++|++++|.+.+.
T Consensus 84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 9999999988888899999999999999999988899999999999999999998753
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=143.38 Aligned_cols=114 Identities=21% Similarity=0.356 Sum_probs=101.3
Q ss_pred hhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEe
Q 036049 325 PDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFN 404 (517)
Q Consensus 325 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 404 (517)
+..++.|++++|.++ .+|..|..+++|+.|+|++|+|++..+..|.++++|++|+|++|+|++..|..|..+++|++|+
T Consensus 30 ~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 30 PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence 345788889999998 6778899999999999999999988888899999999999999999988888899999999999
Q ss_pred ccCCcccccCCCC-CcCCccCCCcccCCCCCCCCCC
Q 036049 405 VSDNYLTGLIPQG-KQFATFDNTSFDGNSGLCGKPL 439 (517)
Q Consensus 405 l~~N~l~~~~p~~-~~~~~l~~~~~~~Np~~c~~~~ 439 (517)
+++|+|++.++.. ..+..+..+++.+||+.|+|.+
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 109 LHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 9999999877653 4678889999999999998864
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=1.3e-16 Score=139.70 Aligned_cols=133 Identities=20% Similarity=0.229 Sum_probs=65.9
Q ss_pred CCcEEEccCCCCc-ccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCccccccc
Q 036049 114 SLKLLDLRSCGFW-GKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDM 192 (517)
Q Consensus 114 ~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 192 (517)
+|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..|..+++|++|++++|.+++.+|..+..+++|++|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 4555555555553 34444445555555555555555532 44555555555555555555444444444555555555
Q ss_pred ccccCcceeccccccc--cccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCC
Q 036049 193 AQNSYGGTMEIEGKVH--KWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFT 266 (517)
Q Consensus 193 ~~N~l~~~~~~~~~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (517)
++|.++ .++ ..+.. +++|++|++++|.+++.++.. ...+..+++|++|++++|.+.
T Consensus 103 s~N~l~-------~~~~~~~l~~--l~~L~~L~l~~N~l~~~~~~~---------~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 103 SGNKLK-------DISTLEPLKK--LECLKSLDLFNCEVTNLNDYR---------ESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp BSSSCC-------SSGGGGGGSS--CSCCCEEECCSSGGGTSTTHH---------HHHHTTCSSCCEETTEETTSC
T ss_pred cCCccC-------cchhHHHHhc--CCCCCEEEeeCCcCcchHHHH---------HHHHHhCccCcEecCCCCChh
Confidence 555554 222 22333 555555666655555543200 001244556666666666654
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=1.6e-17 Score=178.65 Aligned_cols=153 Identities=19% Similarity=0.097 Sum_probs=89.2
Q ss_pred CCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEE
Q 036049 87 VHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAI 166 (517)
Q Consensus 87 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L 166 (517)
+.++.|+|.+|.+.. .+.. .|+.++|+.|.|. .++++.|.+. ..++.|..++.|++|
T Consensus 173 ~~~~~l~L~~n~~~~--~~~~------~l~~l~Ls~~~i~--------------~~~~~~n~~~-~~~~~~~~l~~L~~L 229 (727)
T 4b8c_D 173 PLTPKIELFANGKDE--ANQA------LLQHKKLSQYSID--------------EDDDIENRMV-MPKDSKYDDQLWHAL 229 (727)
T ss_dssp ------------------------------------------------------------------------CCCCCCEE
T ss_pred CccceEEeeCCCCCc--chhh------HhhcCccCccccc--------------Ccccccccee-cChhhhccCCCCcEE
Confidence 446666666666644 2222 3455555555542 2345556666 678889999999999
Q ss_pred EcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCC
Q 036049 167 YMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEP 246 (517)
Q Consensus 167 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~ 246 (517)
+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+.. +++|++|+|++|.|+.++.
T Consensus 230 ~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-------~lp~~~~~--l~~L~~L~Ls~N~l~~lp~------------ 287 (727)
T 4b8c_D 230 DLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-------ELPAEIKN--LSNLRVLDLSHNRLTSLPA------------ 287 (727)
T ss_dssp ECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-------CCCGGGGG--GTTCCEEECTTSCCSSCCS------------
T ss_pred ECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-------ccChhhhC--CCCCCEEeCcCCcCCccCh------------
Confidence 99999998 77877889999999999999997 78888877 9999999999999996533
Q ss_pred CCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCc
Q 036049 247 RTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASE 287 (517)
Q Consensus 247 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~ 287 (517)
.+..+++|++|+|++|.|+ .+|.. +..+++|+.|++++
T Consensus 288 -~~~~l~~L~~L~L~~N~l~-~lp~~-~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 288 -ELGSCFQLKYFYFFDNMVT-TLPWE-FGNLCNLQFLGVEG 325 (727)
T ss_dssp -SGGGGTTCSEEECCSSCCC-CCCSS-TTSCTTCCCEECTT
T ss_pred -hhcCCCCCCEEECCCCCCC-ccChh-hhcCCCccEEeCCC
Confidence 3578999999999999997 88865 66666666666555
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=2.2e-16 Score=138.27 Aligned_cols=134 Identities=18% Similarity=0.144 Sum_probs=73.8
Q ss_pred CCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEE
Q 036049 87 VHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAI 166 (517)
Q Consensus 87 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L 166 (517)
++|++|++++|.++...+|..+..+. +|++|++++|.+.+. ..|..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFV-NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGG-GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCC-CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 45555666655555111444444444 666666666665433 455566666666666666665455555556666666
Q ss_pred EcccccccccC-chhhhcCCcccccccccccCcceecccccccc----ccccccCCCCCeEeccCCccccc
Q 036049 167 YMSKCNFSGQI-TSSLRNLTELVVLDMAQNSYGGTMEIEGKVHK----WLLDPNMQNLNALNLSHNLLTGF 232 (517)
Q Consensus 167 ~L~~n~l~~~~-p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~----~~~~~~l~~L~~L~Ls~n~l~~~ 232 (517)
++++|.+++.. +..+..+++|++|++++|.++ .++. .+.. +++|++|++++|.+...
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-------~~~~~~~~~~~~--l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-------NLNDYRESVFKL--LPQLTYLDGYDREDQEA 162 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-------TSTTHHHHHHTT--CSSCCEETTEETTSCBC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-------chHHHHHHHHHh--CccCcEecCCCCChhhc
Confidence 66666665321 145556666666666666555 2332 3333 66666666666665554
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=2.9e-16 Score=134.52 Aligned_cols=111 Identities=21% Similarity=0.242 Sum_probs=74.3
Q ss_pred CCcEEEccCCCCc-ccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCccccccc
Q 036049 114 SLKLLDLRSCGFW-GKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDM 192 (517)
Q Consensus 114 ~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 192 (517)
+|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..++.+++|++|++++|.+++.+|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 6777777777775 46676777777777777777777754 56777777777777777777656666666777777777
Q ss_pred ccccCcceeccccccccccccccCCCCCeEeccCCcccccC
Q 036049 193 AQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFD 233 (517)
Q Consensus 193 ~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 233 (517)
++|.+++. ..+..+.. +++|++|++++|.+++.+
T Consensus 96 s~N~i~~~-----~~~~~~~~--l~~L~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 96 SGNKIKDL-----STIEPLKK--LENLKSLDLFNCEVTNLN 129 (149)
T ss_dssp TTSCCCSH-----HHHGGGGG--CTTCCEEECTTCGGGGST
T ss_pred CCCcCCCh-----HHHHHHhh--CCCCCEEeCcCCcccchH
Confidence 77776521 01133444 666666666666666543
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=2.1e-16 Score=135.40 Aligned_cols=127 Identities=21% Similarity=0.252 Sum_probs=67.1
Q ss_pred CcEEEEEcCCCCce-eeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCC
Q 036049 61 GHVVKLNLSHSCLF-GSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRL 139 (517)
Q Consensus 61 ~~l~~L~Ls~n~l~-~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 139 (517)
.+++.|++++|.++ +.++. .+..+++|++|++++|.++. + ..+..+. +|++|++++|.+.+.+|..+..+++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEG--LTDEFEELEFLSTINVGLTS--I-ANLPKLN-KLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCS--CCTTCTTCCEEECTTSCCCC--C-TTCCCCT-TCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred ccCeEEEccCCcCChhHHHH--HHhhcCCCcEEECcCCCCCC--c-hhhhcCC-CCCEEECCCCcccchHHHHhhhCCCC
Confidence 34566666666665 34444 45556666666666665554 2 3333333 55555555555544455545555555
Q ss_pred cEEEccCCccccc-ccccccCCccccEEEcccccccccCc---hhhhcCCcccccccc
Q 036049 140 QFLYLGFNNFSGD-LLGSIGNLRSLEAIYMSKCNFSGQIT---SSLRNLTELVVLDMA 193 (517)
Q Consensus 140 ~~L~Ls~n~i~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~l~ 193 (517)
++|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 5555555555532 22455555555555555555554333 345555555555543
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=1.9e-15 Score=135.26 Aligned_cols=126 Identities=21% Similarity=0.223 Sum_probs=99.0
Q ss_pred EEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEc
Q 036049 65 KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYL 144 (517)
Q Consensus 65 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 144 (517)
.++++++.++. +|. .+ .++|++|+|++|.++. +|..+..+. +|++|+|++|.+++..+..|.++++|++|+|
T Consensus 14 ~l~~~~~~l~~-ip~--~~--~~~l~~L~L~~n~i~~--ip~~~~~l~-~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 14 VVRCSNKGLKV-LPK--GI--PRDVTELYLDGNQFTL--VPKELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp EEECTTSCCSS-CCS--CC--CTTCCEEECCSSCCCS--CCGGGGGCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred EEEcCCCCCCc-CCC--CC--CCCCCEEECCCCcCch--hHHHhhccc-CCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence 45666777763 343 23 2578899999998875 777776766 8899999999887777778888888999999
Q ss_pred cCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCc
Q 036049 145 GFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYG 198 (517)
Q Consensus 145 s~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~ 198 (517)
++|.+++..+..|..+++|++|+|++|.++...+..|..+++|+.|++++|.+.
T Consensus 86 s~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 86 SYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 988888777778888888888888888888666667778888888888888775
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=2.8e-15 Score=132.32 Aligned_cols=132 Identities=20% Similarity=0.267 Sum_probs=95.4
Q ss_pred CcccceeecCCCCCcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhh-hhcccCCcEEEccCCCCc
Q 036049 48 CCSWDGVHCNKNTGHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEI-INLSCSLKLLDLRSCGFW 126 (517)
Q Consensus 48 ~C~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~l~ 126 (517)
.|.|.++.|. +++++. +|. .+ .++|++|++++|.++. +++.. ..+. +|++|++++|.+.
T Consensus 6 ~C~~~~l~~~------------~~~l~~-~p~--~~--~~~l~~L~l~~n~l~~--~~~~~~~~l~-~L~~L~l~~n~l~ 65 (177)
T 2o6r_A 6 SCSGTEIRCN------------SKGLTS-VPT--GI--PSSATRLELESNKLQS--LPHGVFDKLT-QLTKLSLSQNQIQ 65 (177)
T ss_dssp EEETTEEECC------------SSCCSS-CCT--TC--CTTCSEEECCSSCCCC--CCTTTTTTCT-TCSEEECCSSCCC
T ss_pred EeCCCEEEec------------CCCCcc-CCC--CC--CCCCcEEEeCCCcccE--eCHHHhcCcc-cccEEECCCCcce
Confidence 3778777774 334442 222 22 3678888888888876 55544 3444 8888888888886
Q ss_pred ccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcc
Q 036049 127 GKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGG 199 (517)
Q Consensus 127 ~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 199 (517)
+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 66 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 66 SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 6666667888888888888888887666667888888888888888886555566778888888888887764
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.62 E-value=8.7e-16 Score=135.51 Aligned_cols=135 Identities=14% Similarity=0.148 Sum_probs=95.3
Q ss_pred ccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCc
Q 036049 82 SLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLR 161 (517)
Q Consensus 82 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~ 161 (517)
.+.++.+|++|++++|.++. ++ .+....++|++|++++|.+.+. ..|..+++|++|++++|.+++..+..|..++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~--i~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV--IE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS--CC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred hcCCcCCceEEEeeCCCCch--hH-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 56677788888888888875 54 3445444788888888888654 5678888888888888888855445557888
Q ss_pred cccEEEcccccccccCch--hhhcCCcccccccccccCcceeccccccccc----cccccCCCCCeEeccCCcccc
Q 036049 162 SLEAIYMSKCNFSGQITS--SLRNLTELVVLDMAQNSYGGTMEIEGKVHKW----LLDPNMQNLNALNLSHNLLTG 231 (517)
Q Consensus 162 ~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~----~~~~~l~~L~~L~Ls~n~l~~ 231 (517)
+|++|++++|.++ .+|. .+..+++|++|++++|.++ .+|.. +.. +++|++|+++.|.+..
T Consensus 89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-------~~~~~~~~~~~~--l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-------NKKHYRLYVIYK--VPQVRVLDFQKVKLKE 154 (176)
T ss_dssp TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-------GSTTHHHHHHHH--CTTCSEETTEECCHHH
T ss_pred CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-------CcHhHHHHHHHH--CCccceeCCCcCCHHH
Confidence 8888888888886 4454 6777777777777777775 34443 333 6667777776665543
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=1.6e-15 Score=147.96 Aligned_cols=271 Identities=12% Similarity=0.062 Sum_probs=162.5
Q ss_pred cEEEEEcCCCCceeeeCCCccccc-CCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCC-----
Q 036049 62 HVVKLNLSHSCLFGSINSSSSLYK-LVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGN----- 135 (517)
Q Consensus 62 ~l~~L~Ls~n~l~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~----- 135 (517)
++++|.++++ +...... .+.. +++|++|||++|++.....+.. ... .++.+.+..|.+ .+..|.+
T Consensus 26 ~l~~L~l~g~-i~~~~~~--~l~~~l~~L~~LdLs~n~i~~~~~~~~--~~~-~~~~~~~~~~~I---~~~aF~~~~~~~ 96 (329)
T 3sb4_A 26 SITHLTLTGK-LNAEDFR--HLRDEFPSLKVLDISNAEIKMYSGKAG--TYP-NGKFYIYMANFV---PAYAFSNVVNGV 96 (329)
T ss_dssp HCSEEEEEEE-ECHHHHH--HHHHSCTTCCEEEEEEEEECCEEESSS--SSG-GGCCEEECTTEE---CTTTTEEEETTE
T ss_pred ceeEEEEecc-ccHHHHH--HHHHhhccCeEEecCcceeEEecCccc--ccc-cccccccccccc---CHHHhccccccc
Confidence 5677777653 2111111 3334 7889999999998872101111 111 234455555533 2345556
Q ss_pred ---CCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccC----c---ce-----
Q 036049 136 ---FTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSY----G---GT----- 200 (517)
Q Consensus 136 ---l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l----~---~~----- 200 (517)
+++|+.|+|.+ .++.+.+.+|..+++|+.|++.+|.+....+..|.++.++..+....+.. . ..
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 88888888887 77766667788888888888888877766677777777776666554221 0 00
Q ss_pred ------e--ccccccccccccc--cCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCC
Q 036049 201 ------M--EIEGKVHKWLLDP--NMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLP 270 (517)
Q Consensus 201 ------~--~~~~~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 270 (517)
. ...+.++..++.. ...+++.+.+.++-....... ....+++|+.+++++|+++ .+|
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~------------l~~~~~~L~~l~L~~n~i~-~I~ 242 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKL------------IRDYMPNLVSLDISKTNAT-TIP 242 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHH------------HHHHCTTCCEEECTTBCCC-EEC
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHH------------HHHhcCCCeEEECCCCCcc-eec
Confidence 0 0000111111000 022233333332211000000 0012678999999998887 788
Q ss_pred hhhhhcccccceeccCcccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCC
Q 036049 271 SKSFLCWNAMKIVNASELRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLK 350 (517)
Q Consensus 271 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~ 350 (517)
...|..+.+|+.+++.+ | ++...+.+|.+++
T Consensus 243 ~~aF~~~~~L~~l~l~~------------------------------------------------n-i~~I~~~aF~~~~ 273 (329)
T 3sb4_A 243 DFTFAQKKYLLKIKLPH------------------------------------------------N-LKTIGQRVFSNCG 273 (329)
T ss_dssp TTTTTTCTTCCEEECCT------------------------------------------------T-CCEECTTTTTTCT
T ss_pred HhhhhCCCCCCEEECCc------------------------------------------------c-cceehHHHhhCCh
Confidence 87777766666655443 2 3334456788888
Q ss_pred CCC-eEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEec
Q 036049 351 GLQ-VLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNV 405 (517)
Q Consensus 351 ~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 405 (517)
+|+ .+++.+ .++...+.+|.++++|+.|++++|+++...+..|.++++|+.++.
T Consensus 274 ~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 274 RLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 898 999988 777666788999999999999999988777778888999988864
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=5.3e-15 Score=130.57 Aligned_cols=112 Identities=20% Similarity=0.203 Sum_probs=57.8
Q ss_pred CCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccc-cccccC
Q 036049 138 RLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKW-LLDPNM 216 (517)
Q Consensus 138 ~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~-~~~~~l 216 (517)
+|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.++ .++.. +.. +
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-------~~~~~~~~~--l 99 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-------SLPNGVFDK--L 99 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------CCCTTTTTT--C
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc-------ccCHHHhhC--C
Confidence 4444444444444333333444444444444444444333333444444555555554444 22221 222 5
Q ss_pred CCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCC
Q 036049 217 QNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLP 270 (517)
Q Consensus 217 ~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 270 (517)
++|++|++++|.++++++. .+..+++|++|++++|.+.+..|
T Consensus 100 ~~L~~L~l~~N~l~~~~~~------------~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 100 TQLKELALDTNQLKSVPDG------------IFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTCCEEECCSSCCSCCCTT------------TTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccCEEECcCCcceEeCHH------------HhcCCcccCEEEecCCCeeccCc
Confidence 6666666666666655432 23567778888888888876555
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.58 E-value=7.4e-14 Score=139.38 Aligned_cols=169 Identities=13% Similarity=0.076 Sum_probs=89.5
Q ss_pred cCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCcccc
Q 036049 85 KLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLE 164 (517)
Q Consensus 85 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~ 164 (517)
.+..++.+.+.++ ++. ++...+... +|+.+.+..+ +...-...|.++ +|+.+.+.. .+......+|.++++|+
T Consensus 111 ~~~~l~~i~ip~~-i~~--I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKS--IPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp ECSSCSEEECCTT-CCE--ECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred ecCCccEEEECCc-cCE--ehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence 3455666665543 332 444444444 6666666554 434444555553 466666664 45545555666666666
Q ss_pred EEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCC
Q 036049 165 AIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNE 244 (517)
Q Consensus 165 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~ 244 (517)
.+++.+|.++......|. ..+|+.+.+..+ ++ .++...+. .+++|+.+++..+ ++.+...
T Consensus 184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-------~I~~~aF~-~~~~L~~l~l~~~-l~~I~~~--------- 243 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-------EIGSQAFL-KTSQLKTIEIPEN-VSTIGQE--------- 243 (401)
T ss_dssp EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-------EECTTTTT-TCTTCCCEECCTT-CCEECTT---------
T ss_pred eeecCCCcceEechhhEe-ecccCEEEeCCc-hh-------eehhhHhh-CCCCCCEEecCCC-ccCcccc---------
Confidence 666666666644444444 466666666533 33 33333332 2566666666653 3333222
Q ss_pred CCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccC
Q 036049 245 EPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNAS 286 (517)
Q Consensus 245 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~ 286 (517)
+|.+ .+|+.+.+. +.++ .++...|..+.+|+.+.+.
T Consensus 244 ---aF~~-~~L~~i~lp-~~i~-~I~~~aF~~c~~L~~l~l~ 279 (401)
T 4fdw_A 244 ---AFRE-SGITTVKLP-NGVT-NIASRAFYYCPELAEVTTY 279 (401)
T ss_dssp ---TTTT-CCCSEEEEE-TTCC-EECTTTTTTCTTCCEEEEE
T ss_pred ---cccc-CCccEEEeC-CCcc-EEChhHhhCCCCCCEEEeC
Confidence 2333 456666663 3344 5555666666666665544
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=1.5e-14 Score=127.55 Aligned_cols=131 Identities=16% Similarity=0.161 Sum_probs=99.6
Q ss_pred CCcEEEccCCCCcccCCccCCCCC-CCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCccccccc
Q 036049 114 SLKLLDLRSCGFWGKVPHSIGNFT-RLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDM 192 (517)
Q Consensus 114 ~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 192 (517)
+|++|++++|.+. .+|. +..+. +|++|++++|.+++. ..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 20 ~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 20 RDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp SCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 8999999999985 4554 55544 899999999999864 67888999999999999998665566688999999999
Q ss_pred ccccCcceecccccccc--ccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCC
Q 036049 193 AQNSYGGTMEIEGKVHK--WLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFT 266 (517)
Q Consensus 193 ~~N~l~~~~~~~~~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (517)
++|.++ .+|. .+.. +++|++|++++|.++..+... ...+..+++|++||+++|.+.
T Consensus 96 ~~N~i~-------~~~~~~~l~~--l~~L~~L~l~~N~i~~~~~~~---------~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 96 TNNSLV-------ELGDLDPLAS--LKSLTYLCILRNPVTNKKHYR---------LYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CSCCCC-------CGGGGGGGGG--CTTCCEEECCSSGGGGSTTHH---------HHHHHHCTTCSEETTEECCHH
T ss_pred CCCcCC-------cchhhHhhhc--CCCCCEEEecCCCCCCcHhHH---------HHHHHHCCccceeCCCcCCHH
Confidence 999886 4554 4555 888888888888887653210 001356788888888887764
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.51 E-value=4.9e-14 Score=123.35 Aligned_cols=85 Identities=18% Similarity=0.192 Sum_probs=40.0
Q ss_pred CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccc
Q 036049 114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMA 193 (517)
Q Consensus 114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 193 (517)
+|++|+|++|.+.+..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|.+++..+..|..+++|++|+++
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 44444444444444444444444555555555555544333344444555555555555443333344444444444444
Q ss_pred cccCc
Q 036049 194 QNSYG 198 (517)
Q Consensus 194 ~N~l~ 198 (517)
+|.+.
T Consensus 111 ~N~~~ 115 (170)
T 3g39_A 111 NNPWD 115 (170)
T ss_dssp SSCBC
T ss_pred CCCCC
Confidence 44443
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=5.3e-14 Score=123.13 Aligned_cols=108 Identities=25% Similarity=0.279 Sum_probs=81.1
Q ss_pred hhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccC
Q 036049 328 LAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSD 407 (517)
Q Consensus 328 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~ 407 (517)
.+.+++++|.++ .+|..+ .++|+.|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 456778888877 456554 36788888888888877777788888888888888888866666677888888888888
Q ss_pred CcccccCCC-CCcCCccCCCcccCCCCCCCCC
Q 036049 408 NYLTGLIPQ-GKQFATFDNTSFDGNSGLCGKP 438 (517)
Q Consensus 408 N~l~~~~p~-~~~~~~l~~~~~~~Np~~c~~~ 438 (517)
|+|++.+|. ...+..+..+++++||+.|+|+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 888877665 3456777777888888888764
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=3.9e-16 Score=140.62 Aligned_cols=114 Identities=22% Similarity=0.273 Sum_probs=78.1
Q ss_pred CchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhc
Q 036049 104 IQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRN 183 (517)
Q Consensus 104 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 183 (517)
+|..+..+. +|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..
T Consensus 40 l~~~~~~l~-~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~ 113 (198)
T 1ds9_A 40 MDATLSTLK-ACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEK 113 (198)
T ss_dssp CHHHHHHTT-TCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHH
T ss_pred hhHHHhcCC-CCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-cccc
Confidence 334666666 77777777777744 55 6777777777777777777 566666667777777777777774 34 5777
Q ss_pred CCcccccccccccCcceecccccccc--ccccccCCCCCeEeccCCccccc
Q 036049 184 LTELVVLDMAQNSYGGTMEIEGKVHK--WLLDPNMQNLNALNLSHNLLTGF 232 (517)
Q Consensus 184 l~~L~~L~l~~N~l~~~~~~~~~~~~--~~~~~~l~~L~~L~Ls~n~l~~~ 232 (517)
+++|++|++++|.++ .++. .+.. +++|++|++++|.+++.
T Consensus 114 l~~L~~L~l~~N~i~-------~~~~~~~l~~--l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 114 LVNLRVLYMSNNKIT-------NWGEIDKLAA--LDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHHSSEEEESEEECC-------CHHHHHHHTT--TTTCSEEEECSCHHHHH
T ss_pred CCCCCEEECCCCcCC-------chhHHHHHhc--CCCCCEEEecCCccccc
Confidence 777777777777776 2222 3333 67777777777777654
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=3.1e-16 Score=141.25 Aligned_cols=64 Identities=25% Similarity=0.277 Sum_probs=38.5
Q ss_pred ccCCCCCCeEeCcCccccccCC-hhccCCCCCCeeeCCCCcccccCcc----------ccccCCCCCEEeccCCccc
Q 036049 346 ISNLKGLQVLNLHNNNLQGHIP-SCLGNLTNLESLDLSNNKFSGRIPQ----------QLVELTFLAFFNVSDNYLT 411 (517)
Q Consensus 346 ~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~----------~l~~l~~L~~L~l~~N~l~ 411 (517)
+..+++|+.|++++|++++..+ ..+..+++|++|++++|.+.+..|. .+..+++|+.|| +|.++
T Consensus 111 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 4445666666666666663222 3566666777777777766655443 266677777765 55554
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.48 E-value=8.3e-14 Score=135.82 Aligned_cols=198 Identities=16% Similarity=0.154 Sum_probs=127.4
Q ss_pred CCcEEEEEcCCCCce--e-----------------eeCCCccccc--------CCCCCEEEcCCCCCCCCCCchhhhhcc
Q 036049 60 TGHVVKLNLSHSCLF--G-----------------SINSSSSLYK--------LVHLEWLNLALNDFNSSEIQPEIINLS 112 (517)
Q Consensus 60 ~~~l~~L~Ls~n~l~--~-----------------~~~~~~~l~~--------l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 112 (517)
..+++.|||++|.+. . .++. .+|.+ +++|+.|+|.+ .++. +++..|...
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~-~aF~~~~~~~~~g~~~L~~l~L~~-~i~~--I~~~aF~~~ 123 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPA-YAFSNVVNGVTKGKQTLEKVILSE-KIKN--IEDAAFKGC 123 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECT-TTTEEEETTEEEECTTCCC-CBCT-TCCE--ECTTTTTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCH-HHhcccccccccccCCCcEEECCc-cccc--hhHHHhhcC
Confidence 357999999999887 1 1111 25666 78888888877 6655 555555444
Q ss_pred cCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcc----cccccccc-------------------------------
Q 036049 113 CSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNF----SGDLLGSI------------------------------- 157 (517)
Q Consensus 113 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i----~~~~p~~~------------------------------- 157 (517)
++|++|++++|.+....+..|.++.++..+.+..+.. ......+|
T Consensus 124 ~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~ 203 (329)
T 3sb4_A 124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRD 203 (329)
T ss_dssp TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGG
T ss_pred cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccc
Confidence 4788888888877666667777777676666554211 00000001
Q ss_pred -------------------cCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCC
Q 036049 158 -------------------GNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQN 218 (517)
Q Consensus 158 -------------------~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~ 218 (517)
..+++|++|+|++|.++...+..|.++++|+.|++.+| ++ .++...+. ++++
T Consensus 204 ~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-------~I~~~aF~-~~~~ 274 (329)
T 3sb4_A 204 INFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-------TIGQRVFS-NCGR 274 (329)
T ss_dssp CSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-------EECTTTTT-TCTT
T ss_pred cceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-------eehHHHhh-CChh
Confidence 02567777777777777666667777777777777776 54 45554443 2777
Q ss_pred CC-eEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceec
Q 036049 219 LN-ALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVN 284 (517)
Q Consensus 219 L~-~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~ 284 (517)
|+ .+++.+ .++.+.+. +|.++++|+.+++++|.++ .++...|.++++|+.+.
T Consensus 275 L~~~l~l~~-~l~~I~~~------------aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 275 LAGTLELPA-SVTAIEFG------------AFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CCEEEEECT-TCCEECTT------------TTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEEE
T ss_pred ccEEEEEcc-cceEEchh------------hhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhhc
Confidence 77 777777 56555433 4677777888888777776 67777777777776654
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.48 E-value=1e-13 Score=121.77 Aligned_cols=103 Identities=21% Similarity=0.180 Sum_probs=44.4
Q ss_pred EEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEc
Q 036049 65 KLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYL 144 (517)
Q Consensus 65 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 144 (517)
.+++++|.++ .+|. .+. ++|++|+|++|.+++. .|..+..+. +|++|+|++|++.+..+..|.++++|++|+|
T Consensus 16 ~l~~~~n~l~-~iP~--~~~--~~L~~L~Ls~N~l~~~-~~~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPA--GIP--TDKQRLWLNNNQITKL-EPGVFDHLV-NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp EEECCSSCCS-SCCS--CCC--TTCSEEECCSSCCCCC-CTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred EEEeCCCCCC-ccCC--CcC--CCCcEEEeCCCCcccc-CHHHhcCCc-CCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence 4555555553 2222 221 4455555555555441 122222333 4444444444443333333444444444444
Q ss_pred cCCcccccccccccCCccccEEEccccccc
Q 036049 145 GFNNFSGDLLGSIGNLRSLEAIYMSKCNFS 174 (517)
Q Consensus 145 s~n~i~~~~p~~~~~l~~L~~L~L~~n~l~ 174 (517)
++|+|++..+..|..+++|++|+|++|.+.
T Consensus 89 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 89 NDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 444444333333444444444444444443
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=1.1e-13 Score=121.59 Aligned_cols=107 Identities=22% Similarity=0.268 Sum_probs=73.3
Q ss_pred hhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCC
Q 036049 329 AGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDN 408 (517)
Q Consensus 329 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N 408 (517)
+.+++++|.++ .+|..+. ++|+.|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45667777775 4555443 67777777777777666777777777777777777777555555667777777777777
Q ss_pred cccccCCC-CCcCCccCCCcccCCCCCCCCC
Q 036049 409 YLTGLIPQ-GKQFATFDNTSFDGNSGLCGKP 438 (517)
Q Consensus 409 ~l~~~~p~-~~~~~~l~~~~~~~Np~~c~~~ 438 (517)
+|++.++. ...+..+..+++.+||+.|+|.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 77766554 3456667777777777777654
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.46 E-value=1.6e-12 Score=129.73 Aligned_cols=241 Identities=11% Similarity=0.058 Sum_probs=168.9
Q ss_pred cCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCccccccc
Q 036049 113 CSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDM 192 (517)
Q Consensus 113 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 192 (517)
..++.+.+.++ +...-...|.++ +|+.+.+..+ ++.....+|.+. +|+.+.+.+ .++...+.+|.++++|+.+++
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 37788887654 445556678875 7999999876 776777788884 799999986 677677788999999999999
Q ss_pred ccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChh
Q 036049 193 AQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSK 272 (517)
Q Consensus 193 ~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 272 (517)
..|.++ .++...+. +.+|+.+.+..+ ++.+... +|.++++|+.+++..| ++ .++..
T Consensus 188 ~~n~l~-------~I~~~aF~--~~~L~~l~lp~~-l~~I~~~------------aF~~~~~L~~l~l~~~-l~-~I~~~ 243 (401)
T 4fdw_A 188 SKTKIT-------KLPASTFV--YAGIEEVLLPVT-LKEIGSQ------------AFLKTSQLKTIEIPEN-VS-TIGQE 243 (401)
T ss_dssp TTSCCS-------EECTTTTT--TCCCSEEECCTT-CCEECTT------------TTTTCTTCCCEECCTT-CC-EECTT
T ss_pred CCCcce-------EechhhEe--ecccCEEEeCCc-hheehhh------------HhhCCCCCCEEecCCC-cc-Ccccc
Confidence 999887 77777777 789999999854 6655433 5678889999999875 54 67777
Q ss_pred hhhcccccceeccCc-ccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCc-----ccCcccc
Q 036049 273 SFLCWNAMKIVNASE-LRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFD-----GAIPASI 346 (517)
Q Consensus 273 ~~~~l~~L~~L~l~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-----~~~p~~~ 346 (517)
.|.. ..|+.+.+.. +..+ ....+....+|+.+++.+|.+. ...+..|
T Consensus 244 aF~~-~~L~~i~lp~~i~~I--------------------------~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF 296 (401)
T 4fdw_A 244 AFRE-SGITTVKLPNGVTNI--------------------------ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL 296 (401)
T ss_dssp TTTT-CCCSEEEEETTCCEE--------------------------CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT
T ss_pred cccc-CCccEEEeCCCccEE--------------------------ChhHhhCCCCCCEEEeCCccccCCcccEECHHHh
Confidence 7776 5666666533 1111 1112222456667777666554 3445567
Q ss_pred cCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcccc
Q 036049 347 SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLTG 412 (517)
Q Consensus 347 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 412 (517)
.++++|+.++|.+ .++.....+|.++++|+.++|..| ++..-...|.++ +|+.+++++|.+..
T Consensus 297 ~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 297 EGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp TTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred hCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence 7777788888773 466555667777778888887554 554556677777 78888887776553
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.36 E-value=9.8e-13 Score=129.23 Aligned_cols=107 Identities=21% Similarity=0.212 Sum_probs=88.0
Q ss_pred hhhCCCC-CCcccCcccccCCCCCCeEeCcC-ccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccC
Q 036049 330 GIILSNK-SFDGAIPASISNLKGLQVLNLHN-NNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSD 407 (517)
Q Consensus 330 ~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~ 407 (517)
.++++++ .++ .+|. +..+++|+.|+|++ |+|++..+..|..+++|+.|+|++|+|++..|..|..+++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4567777 777 4777 88888899999986 899877778888999999999999999988888888899999999999
Q ss_pred CcccccCCCCCcCCccCCCcccCCCCCCCCC
Q 036049 408 NYLTGLIPQGKQFATFDNTSFDGNSGLCGKP 438 (517)
Q Consensus 408 N~l~~~~p~~~~~~~l~~~~~~~Np~~c~~~ 438 (517)
|+|++.+|.......+..+++.+|++.|+|.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred CccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence 9998877765444448888889999999875
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.34 E-value=6.2e-14 Score=138.59 Aligned_cols=164 Identities=16% Similarity=0.162 Sum_probs=93.7
Q ss_pred CcEEEEEcCCCCceeeeCCCcccc-----cCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccC--
Q 036049 61 GHVVKLNLSHSCLFGSINSSSSLY-----KLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSI-- 133 (517)
Q Consensus 61 ~~l~~L~Ls~n~l~~~~~~~~~l~-----~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-- 133 (517)
..++.|+|++|.++..... .+. ..++|++|+|++|.++.. ....+....++|++|+|++|.+.......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~--~l~~~L~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCT--VVAAVLGSGRHALDEVNLASCQLDPA-GLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp TTCCEEECTTSCCCHHHHH--HHHHHHSSCSSCEEEEECTTCCCCHH-HHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHH--HHHHHHhhCCCCceEEEecCCCCCHH-HHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 3577777777777543221 222 225777777777777542 122333322377777777777754332232
Q ss_pred ---CCCCCCcEEEccCCccccc----ccccccCCccccEEEccccccccc----CchhhhcCCcccccccccccCcceec
Q 036049 134 ---GNFTRLQFLYLGFNNFSGD----LLGSIGNLRSLEAIYMSKCNFSGQ----ITSSLRNLTELVVLDMAQNSYGGTME 202 (517)
Q Consensus 134 ---~~l~~L~~L~Ls~n~i~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~N~l~~~~~ 202 (517)
...++|++|+|++|.++.. ++..+..+++|++|+|++|.++.. ++..+...++|++|++++|.++...
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g- 227 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA- 227 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH-
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH-
Confidence 2456777777777777642 333445667777777777777632 2445556667777777777665210
Q ss_pred cccccccccccccCCCCCeEeccCCcccc
Q 036049 203 IEGKVHKWLLDPNMQNLNALNLSHNLLTG 231 (517)
Q Consensus 203 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 231 (517)
...+...+.. .++|++|+|++|.|+.
T Consensus 228 -~~~l~~~L~~--~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 228 -ALALARAARE--HPSLELLHLYFNELSS 253 (372)
T ss_dssp -HHHHHHHHHH--CSSCCEEECTTSSCCH
T ss_pred -HHHHHHHHHh--CCCCCEEeccCCCCCH
Confidence 0012222222 5667777777776654
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.31 E-value=9.4e-11 Score=117.13 Aligned_cols=297 Identities=11% Similarity=0.041 Sum_probs=146.7
Q ss_pred CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCc
Q 036049 61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQ 140 (517)
Q Consensus 61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 140 (517)
.+++++.|..+ ++..-.. +|.++++|+.+++..+ ++. +....+....+|+.+.+..+ +.......|.++..++
T Consensus 71 ~~L~~i~lp~~-i~~I~~~--aF~~c~~L~~i~lp~~-l~~--I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 71 RKVTEIKIPST-VREIGEF--AFENCSKLEIINIPDS-VKM--IGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TTEEEEECCTT-CCEECTT--TTTTCTTCCEECCCTT-CCE--ECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSE
T ss_pred CCceEEEeCCC-ccCcchh--HhhCCCCCcEEEeCCC-ceE--ccchhhcccccchhhcccCc-eeeecceeeecccccc
Confidence 35666666533 4433333 6667777777777544 332 33333333225555554433 2122223343333222
Q ss_pred EEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCC
Q 036049 141 FLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLN 220 (517)
Q Consensus 141 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~ 220 (517)
...... +......+|.++++|+.+.+.++. .......|.++.+|+.+.+..+ ++ .++...+. .+..|+
T Consensus 144 ~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-------~I~~~~F~-~~~~L~ 211 (394)
T 4fs7_A 144 ITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-------IIRDYCFA-ECILLE 211 (394)
T ss_dssp EECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-------EECTTTTT-TCTTCC
T ss_pred cccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-------EeCchhhc-cccccc
Confidence 222111 111234456677777777776543 2244556667777777776654 22 22222222 155555
Q ss_pred eEeccCCcccccCCCCC-------CCCCCC--CCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCccccc
Q 036049 221 ALNLSHNLLTGFDQHLV-------LLPGNN--EEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASELRYL 291 (517)
Q Consensus 221 ~L~Ls~n~l~~~~~~~~-------ll~~~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~~~~l 291 (517)
.+.+..+...-...... .+|... .....+..+.+|+.+.+..+.. .+....|.....++.+......
T Consensus 212 ~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~-- 287 (394)
T 4fs7_A 212 NMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVI-- 287 (394)
T ss_dssp BCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSE--
T ss_pred eeecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcc--eeeccccccccccceeccCcee--
Confidence 55554432211000000 000000 0001223344444444443322 2222333333333332221100
Q ss_pred ccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhcc
Q 036049 292 QDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLG 371 (517)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 371 (517)
...........|+.+.+.++ ++..-..+|.++.+|+.++|..+ ++.....+|.
T Consensus 288 -------------------------i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~ 340 (394)
T 4fs7_A 288 -------------------------VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFR 340 (394)
T ss_dssp -------------------------ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTT
T ss_pred -------------------------eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhcc
Confidence 01111222455666666544 44445567888889999998754 6655567888
Q ss_pred CCCCCCeeeCCCCcccccCccccccCCCCCEEeccCC
Q 036049 372 NLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDN 408 (517)
Q Consensus 372 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N 408 (517)
++++|+.+++..+ ++..-..+|.++++|+.+++..+
T Consensus 341 ~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 341 GCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred CCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 8999999999877 66566678888899999888654
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.26 E-value=9e-12 Score=122.32 Aligned_cols=88 Identities=19% Similarity=0.229 Sum_probs=57.5
Q ss_pred cccCCCCCEEEcCC-CCCCCCCCchh-hhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCC
Q 036049 83 LYKLVHLEWLNLAL-NDFNSSEIQPE-IINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNL 160 (517)
Q Consensus 83 l~~l~~L~~L~Ls~-n~l~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l 160 (517)
+..+++|++|+|++ |.++. +++. +..+. +|++|+|++|.|.+..|..|.++++|++|+|++|+|++..+..|..+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~--~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~ 103 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQH--LELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL 103 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCE--ECGGGSCSCC-CCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC
T ss_pred CCCCCCeeEEEccCCCCCCC--cChhHhcccc-CCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccC
Confidence 56667777777774 77765 4433 33444 77777777777766666667777777777777777775544455554
Q ss_pred ccccEEEccccccc
Q 036049 161 RSLEAIYMSKCNFS 174 (517)
Q Consensus 161 ~~L~~L~L~~n~l~ 174 (517)
+ |++|+|.+|.+.
T Consensus 104 ~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 104 S-LQELVLSGNPLH 116 (347)
T ss_dssp C-CCEEECCSSCCC
T ss_pred C-ceEEEeeCCCcc
Confidence 4 777777777665
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.26 E-value=1.5e-13 Score=135.91 Aligned_cols=169 Identities=17% Similarity=0.161 Sum_probs=119.1
Q ss_pred CCCCCEEEcCCCCCCCCCCchhhhhc----ccCCcEEEccCCCCcccCCccC-CCCCCCcEEEccCCcccccccccc---
Q 036049 86 LVHLEWLNLALNDFNSSEIQPEIINL----SCSLKLLDLRSCGFWGKVPHSI-GNFTRLQFLYLGFNNFSGDLLGSI--- 157 (517)
Q Consensus 86 l~~L~~L~Ls~n~l~~~~~~~~~~~~----~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls~n~i~~~~p~~~--- 157 (517)
+++|++|+|++|.++.. ....+... .++|++|+|++|.+.......+ ..+++|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~-~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPV-KCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHH-HHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHH-HHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 46899999999999753 22233333 1389999999999854333333 346789999999999986555554
Q ss_pred --cCCccccEEEcccccccc----cCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccc
Q 036049 158 --GNLRSLEAIYMSKCNFSG----QITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTG 231 (517)
Q Consensus 158 --~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 231 (517)
...++|++|+|++|.++. .++..+..+++|++|+|++|.+++.. ...+...+.. .++|++|+|++|.|+.
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g--~~~L~~~L~~--~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEG--LELLAAQLDR--NRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHH--HHHHHHHGGG--CSCCCEEECCSSCCCH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHH--HHHHHHHHhc--CCCcCeEECCCCCCCH
Confidence 346889999999999974 24455678999999999999987311 0123444444 7899999999999975
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCC
Q 036049 232 FDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTG 267 (517)
Q Consensus 232 ~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 267 (517)
..... ....+...++|++|+|++|.|+.
T Consensus 226 ~g~~~--------l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 226 TAALA--------LARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHH--------HHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHH--------HHHHHHhCCCCCEEeccCCCCCH
Confidence 32110 00112346789999999999873
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.02 E-value=5.5e-09 Score=104.24 Aligned_cols=285 Identities=11% Similarity=0.038 Sum_probs=167.0
Q ss_pred ccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCcEEEccCCcccccccccccCCc
Q 036049 82 SLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLR 161 (517)
Q Consensus 82 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~ 161 (517)
+|.++.+|+.+.+..+ ++. +....|...++|+.+++..+ +...-...|.++.+|+.+.+..+ +......+|..+.
T Consensus 66 AF~~c~~L~~i~lp~~-i~~--I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VRE--IGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD 140 (394)
T ss_dssp TTTTCTTEEEEECCTT-CCE--ECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred HhhCCCCceEEEeCCC-ccC--cchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence 8999999999999754 654 66665554349999999765 54555677999999999888755 4445667787776
Q ss_pred cccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCCCCCC
Q 036049 162 SLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPG 241 (517)
Q Consensus 162 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~ 241 (517)
.++....... ......+|.++++|+.+.+..+. . .++...+. .+.+|+.+++..+ ++.+...
T Consensus 141 ~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~-------~I~~~~F~-~c~~L~~i~l~~~-~~~I~~~------ 202 (394)
T 4fs7_A 141 FKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-E-------TLHNGLFS-GCGKLKSIKLPRN-LKIIRDY------ 202 (394)
T ss_dssp CSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-C-------EECTTTTT-TCTTCCBCCCCTT-CCEECTT------
T ss_pred ccccccCccc--cccchhhhcccCCCcEEecCCcc-c-------eecccccc-CCCCceEEEcCCC-ceEeCch------
Confidence 5544443332 22445789999999999997653 2 34444433 2889999999776 4433222
Q ss_pred CCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCc-ccccccccCCCcccchhhhccceeeeec----C
Q 036049 242 NNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASE-LRYLQDVLSPSGKLLMTTYDYLLTMNIK----G 316 (517)
Q Consensus 242 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~ 316 (517)
.|.++..|+.+.+..+... +... +.....|+.+.+.. ...+....... ...+....+. .
T Consensus 203 ------~F~~~~~L~~i~~~~~~~~--i~~~-~~~~~~l~~i~ip~~~~~i~~~~f~~-------~~~l~~~~~~~~~~~ 266 (394)
T 4fs7_A 203 ------CFAECILLENMEFPNSLYY--LGDF-ALSKTGVKNIIIPDSFTELGKSVFYG-------CTDLESISIQNNKLR 266 (394)
T ss_dssp ------TTTTCTTCCBCCCCTTCCE--ECTT-TTTTCCCCEEEECTTCCEECSSTTTT-------CSSCCEEEECCTTCE
T ss_pred ------hhccccccceeecCCCceE--eehh-hcccCCCceEEECCCceecccccccc-------cccceeEEcCCCcce
Confidence 3455566666655544321 1111 11223333333321 01110000000 0000000000 0
Q ss_pred ccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCcccccc
Q 036049 317 RMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVE 396 (517)
Q Consensus 317 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 396 (517)
...........++.+....+.+ ....|..+.+|+.+.+..+ ++.....+|.++++|+.++|.++ ++..-..+|.+
T Consensus 267 i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 341 (394)
T 4fs7_A 267 IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRG 341 (394)
T ss_dssp ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTT
T ss_pred eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccC
Confidence 0011111123333333333322 2245777889999998765 55456677899999999999755 66556678899
Q ss_pred CCCCCEEeccCCccc
Q 036049 397 LTFLAFFNVSDNYLT 411 (517)
Q Consensus 397 l~~L~~L~l~~N~l~ 411 (517)
+.+|+.+++..| ++
T Consensus 342 c~~L~~i~lp~~-l~ 355 (394)
T 4fs7_A 342 CTSLSNINFPLS-LR 355 (394)
T ss_dssp CTTCCEECCCTT-CC
T ss_pred CCCCCEEEECcc-cc
Confidence 999999998766 44
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.92 E-value=2.7e-08 Score=99.20 Aligned_cols=68 Identities=9% Similarity=0.117 Sum_probs=43.6
Q ss_pred cCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCcc
Q 036049 341 AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYL 410 (517)
Q Consensus 341 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l 410 (517)
.....|.++.+|+.++|..+ ++.....+|.++++|+.+.|..+ ++..-...|.++++|+.+++.++..
T Consensus 302 I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 302 LPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred cCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 33455667777777777654 44344556777777777777544 4434455677777777777777654
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.87 E-value=1e-09 Score=107.53 Aligned_cols=59 Identities=19% Similarity=0.335 Sum_probs=32.2
Q ss_pred CCCCCeEeCcCcccccc----CChhccCCCCCCeeeCCCCcccccCcccccc-CCCCCEEeccCCc
Q 036049 349 LKGLQVLNLHNNNLQGH----IPSCLGNLTNLESLDLSNNKFSGRIPQQLVE-LTFLAFFNVSDNY 409 (517)
Q Consensus 349 l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~l~~N~ 409 (517)
+++|++|+|+.|.+++. ++..+..+++|+.|+|++|.|+......+.. + ...+++++++
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 45667777777666543 2333345566777777777666443333332 2 3445665554
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.86 E-value=1.1e-07 Score=94.67 Aligned_cols=281 Identities=8% Similarity=0.034 Sum_probs=131.6
Q ss_pred ccccCC-CCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCC---CcccCCccCCCCCCCcEEEccCCcccccccccc
Q 036049 82 SLYKLV-HLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCG---FWGKVPHSIGNFTRLQFLYLGFNNFSGDLLGSI 157 (517)
Q Consensus 82 ~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~---l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~ 157 (517)
+|.+++ .|+.+.+..+ ++. +....|....+|+.+.+..|. +...-...|.++.+|+.+.+..+ ++.....+|
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~--Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTE--IGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCE--ECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred hccCCCCcCEEEEECCC-eeE--EhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 566653 4777777543 433 444444332377777776553 43333456677777777666544 333445566
Q ss_pred cCCccccEEEcccccccccCchhhhcCCcccccccccccCcceeccccccccccccccCCCCCeEeccCCcccccCCCCC
Q 036049 158 GNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTMEIEGKVHKWLLDPNMQNLNALNLSHNLLTGFDQHLV 237 (517)
Q Consensus 158 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 237 (517)
..+.+|+.+.+..+ +.......|..+.+|+.+.+..+ ++ .+....+. ..+|+.+.+..+-.. ..
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-------~I~~~aF~--~~~l~~i~ip~~~~~-i~---- 197 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-------AIEERAFT--GTALTQIHIPAKVTR-IG---- 197 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-------EECTTTTT--TCCCSEEEECTTCCE-EC----
T ss_pred hhhcccccccccce-eeeecccceecccccccccccce-ee-------Eecccccc--ccceeEEEECCcccc-cc----
Confidence 77777777777544 33244556666677776666544 22 33333343 455666665443211 10
Q ss_pred CCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccC--cccccccccCCCcccchhhhccceeeeec
Q 036049 238 LLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNAS--ELRYLQDVLSPSGKLLMTTYDYLLTMNIK 315 (517)
Q Consensus 238 ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 315 (517)
...+..+.++.......+... .+....+............ ........ .....+.
T Consensus 198 --------~~af~~c~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~ip~~v~ 254 (394)
T 4gt6_A 198 --------TNAFSECFALSTITSDSESYP-AIDNVLYEKSANGDYALIRYPSQREDPAF--------------KIPNGVA 254 (394)
T ss_dssp --------TTTTTTCTTCCEEEECCSSSC-BSSSCEEEECTTSCEEEEECCTTCCCSEE--------------ECCTTEE
T ss_pred --------cchhhhccccceecccccccc-cccceeecccccccccccccccccccceE--------------EcCCcce
Confidence 112344455555554443332 1111111000000000000 00000000 0000000
Q ss_pred CccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCCCcccccCccccc
Q 036049 316 GRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLV 395 (517)
Q Consensus 316 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 395 (517)
......+.....|+.+.+.++... .....|.++.+|+.+.+. +.++.....+|.++.+|+.++|..+ ++..-...|.
T Consensus 255 ~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~ 331 (394)
T 4gt6_A 255 RIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFA 331 (394)
T ss_dssp EECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred EcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhh
Confidence 000111112334444554433222 333456666777777775 3444344556777777777777654 4434455677
Q ss_pred cCCCCCEEeccCC
Q 036049 396 ELTFLAFFNVSDN 408 (517)
Q Consensus 396 ~l~~L~~L~l~~N 408 (517)
++.+|+.+.+..+
T Consensus 332 ~C~~L~~i~ip~s 344 (394)
T 4gt6_A 332 GCEQLERIAIPSS 344 (394)
T ss_dssp TCTTCCEEEECTT
T ss_pred CCCCCCEEEECcc
Confidence 7777777777543
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.83 E-value=3.9e-09 Score=103.28 Aligned_cols=66 Identities=21% Similarity=0.353 Sum_probs=52.2
Q ss_pred CCCCCCeEeCcCccccccCChhcc---CCCCCCeeeCCCCccccc----CccccccCCCCCEEeccCCccccc
Q 036049 348 NLKGLQVLNLHNNNLQGHIPSCLG---NLTNLESLDLSNNKFSGR----IPQQLVELTFLAFFNVSDNYLTGL 413 (517)
Q Consensus 348 ~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~l~~N~l~~~ 413 (517)
.+++|+.|+|++|.+.+..+..+. .+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.|+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 478999999999998754444333 578999999999999864 344556779999999999988743
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.77 E-value=6.3e-10 Score=103.39 Aligned_cols=62 Identities=21% Similarity=0.237 Sum_probs=31.9
Q ss_pred CCCCCcEEEccCCcccc--cccccccCCccccEEEcccccccccCchhhhcCC--cccccccccccCc
Q 036049 135 NFTRLQFLYLGFNNFSG--DLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLT--ELVVLDMAQNSYG 198 (517)
Q Consensus 135 ~l~~L~~L~Ls~n~i~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~l~~N~l~ 198 (517)
++++|+.|+|++|+|++ .+|..+..+++|++|+|++|.|++. ..+..++ +|++|+|++|.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCc
Confidence 34555555555555554 2334445555555666655555532 2233333 5556666666554
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.64 E-value=1.8e-06 Score=85.30 Aligned_cols=291 Identities=10% Similarity=0.006 Sum_probs=161.3
Q ss_pred CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCc
Q 036049 61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQ 140 (517)
Q Consensus 61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 140 (517)
.+|+.+.+.. .++..-.. +|.++.+|+.++|..+ ++. +....+... +|+.+.+..+ +...-...|... +|+
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~--aF~~C~~L~~I~lp~~-v~~--Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~ 116 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEA--NFNSCYNMTKVTVAST-VTS--IGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLD 116 (379)
T ss_dssp GGCSEEEECT-TEEEECTT--TTTTCTTCCEEEECTT-CCE--ECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCS
T ss_pred cCCEEEEeCC-CccChHHH--HhhCCCCCCEEEeCCc-ceE--echhhhcCC-CCceEECCce-eeEeccceeccC-Ccc
Confidence 3577777764 45544444 8999999999999754 544 666666666 7888887654 433344456554 799
Q ss_pred EEEccCCcccccccccccCCccccEEEcccccccccCchhhhcCCcccccccccccCcceec------cccccccccccc
Q 036049 141 FLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQITSSLRNLTELVVLDMAQNSYGGTME------IEGKVHKWLLDP 214 (517)
Q Consensus 141 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~------~~~~~~~~~~~~ 214 (517)
.+.+..+- .......|... +|+.+.+..+ ++......|.....++.+.+..+....... ........+..
T Consensus 117 ~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 192 (379)
T 4h09_A 117 DFEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPA- 192 (379)
T ss_dssp EEECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCT-
T ss_pred cccCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccc-
Confidence 99987653 32444455554 5666655443 333445667777777777665543221100 00001111111
Q ss_pred cCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCc-cccccc
Q 036049 215 NMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASE-LRYLQD 293 (517)
Q Consensus 215 ~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~-~~~l~~ 293 (517)
...+..+.+....-.- ....+....+|+.+.+..+ +. .+....|..+..|+.+.+.. +..+..
T Consensus 193 -~~~~~~~~~~~~~~~i-------------~~~~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~v~~I~~ 256 (379)
T 4h09_A 193 -AKTGTEFTIPSTVKTV-------------TAYGFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKNVTSIGS 256 (379)
T ss_dssp -TCCCSEEECCTTCCEE-------------CTTTTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTTCCEECT
T ss_pred -cccccccccccceeEE-------------eecccccccccceeeeccc-ee-EEccccccCCccceEEEcCCCccEeCc
Confidence 3344444333221110 0112344556666666543 22 44445555566665555432 111110
Q ss_pred ccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCChhccCC
Q 036049 294 VLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNL 373 (517)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 373 (517)
........++.+.+..+ +.......|.++.+|+.+++.++.++.....+|.++
T Consensus 257 --------------------------~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c 309 (379)
T 4h09_A 257 --------------------------FLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDC 309 (379)
T ss_dssp --------------------------TTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTC
T ss_pred --------------------------cccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCC
Confidence 01111223444444322 333334567778888888888887775666778888
Q ss_pred CCCCeeeCCCCcccccCccccccCCCCCEEeccCC
Q 036049 374 TNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDN 408 (517)
Q Consensus 374 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N 408 (517)
.+|+.+.|..+ ++..-..+|.++.+|+.+.+..+
T Consensus 310 ~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 310 VKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred CCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 88888888755 55455567888888887776543
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.55 E-value=1.5e-08 Score=89.52 Aligned_cols=18 Identities=22% Similarity=0.030 Sum_probs=9.5
Q ss_pred cccCCCCCEEEcCCC-CCC
Q 036049 83 LYKLVHLEWLNLALN-DFN 100 (517)
Q Consensus 83 l~~l~~L~~L~Ls~n-~l~ 100 (517)
+...+.|++|+|++| .+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~ 50 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIP 50 (185)
T ss_dssp HTTCTTCCEEECTTCTTCC
T ss_pred HhcCCCCCEEEecCCCCCC
Confidence 344555555555555 543
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.51 E-value=2.1e-08 Score=88.54 Aligned_cols=85 Identities=14% Similarity=0.162 Sum_probs=54.2
Q ss_pred CCcEEEccCC-CCccc----CCccCCCCCCCcEEEccCCccccc----ccccccCCccccEEEccccccccc----Cchh
Q 036049 114 SLKLLDLRSC-GFWGK----VPHSIGNFTRLQFLYLGFNNFSGD----LLGSIGNLRSLEAIYMSKCNFSGQ----ITSS 180 (517)
Q Consensus 114 ~L~~L~Ls~n-~l~~~----~p~~~~~l~~L~~L~Ls~n~i~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~ 180 (517)
.|++|+|++| .+... +...+...++|++|+|++|.|... +...+...++|++|+|++|.|... +...
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~ 116 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA 116 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence 7888888887 76432 334456667788888888877643 233344556777777777777632 3344
Q ss_pred hhcCCccccccc--ccccCc
Q 036049 181 LRNLTELVVLDM--AQNSYG 198 (517)
Q Consensus 181 l~~l~~L~~L~l--~~N~l~ 198 (517)
+...++|++|++ ++|.++
T Consensus 117 L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCC
T ss_pred HHhCCCceEEEecCCCCCCC
Confidence 555666777777 666665
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.49 E-value=7.6e-06 Score=80.85 Aligned_cols=275 Identities=11% Similarity=0.038 Sum_probs=166.9
Q ss_pred CcEEEEEcCCCCceeeeCCCcccccCCCCCEEEcCCCCCCCCCCchhhhhcccCCcEEEccCCCCcccCCccCCCCCCCc
Q 036049 61 GHVVKLNLSHSCLFGSINSSSSLYKLVHLEWLNLALNDFNSSEIQPEIINLSCSLKLLDLRSCGFWGKVPHSIGNFTRLQ 140 (517)
Q Consensus 61 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 140 (517)
.+|+.++|..+ ++..-.. +|.++ +|+.+.+..+ ++. +....+... +|+.+.+..+-. ..-...|.+. +|+
T Consensus 69 ~~L~~I~lp~~-v~~Ig~~--aF~~c-~l~~i~~~~~-l~~--I~~~aF~~~-~L~~i~lp~~~~-~i~~~~F~~~-~l~ 138 (379)
T 4h09_A 69 YNMTKVTVAST-VTSIGDG--AFADT-KLQSYTGMER-VKK--FGDYVFQGT-DLDDFEFPGATT-EIGNYIFYNS-SVK 138 (379)
T ss_dssp TTCCEEEECTT-CCEECTT--TTTTC-CCCEEEECTT-CCE--ECTTTTTTC-CCSEEECCTTCC-EECTTTTTTC-CCC
T ss_pred CCCCEEEeCCc-ceEechh--hhcCC-CCceEECCce-eeE--eccceeccC-CcccccCCCccc-cccccccccc-eee
Confidence 57889999754 5544444 78877 6888887654 443 566667666 899999986532 3334455554 566
Q ss_pred EEEccCCcccccccccccCCccccEEEcccccccccC------------chhhhcCCcccccccccccCcceeccccccc
Q 036049 141 FLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNFSGQI------------TSSLRNLTELVVLDMAQNSYGGTMEIEGKVH 208 (517)
Q Consensus 141 ~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~------------p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 208 (517)
.+.+..+ ++......|..+..++.+.+..+...... ...+.....+..+.+....-. ...
T Consensus 139 ~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------i~~ 210 (379)
T 4h09_A 139 RIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKT-------VTA 210 (379)
T ss_dssp EEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCE-------ECT
T ss_pred eeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeE-------Eee
Confidence 6666543 44355667788888888877665433111 111222223333322221100 111
Q ss_pred cccccccCCCCCeEeccCCcccccCCCCCCCCCCCCCCCCCCCCCcccEEEccCCcCCCCCChhhhhcccccceeccCc-
Q 036049 209 KWLLDPNMQNLNALNLSHNLLTGFDQHLVLLPGNNEEPRTGCGFSKLRIIDLSDNRFTGKLPSKSFLCWNAMKIVNASE- 287 (517)
Q Consensus 209 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ll~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~l~~- 287 (517)
..+.. +.+|+.+.+..+ ++.+.. ..+.++.+|+.+.+..+ ++ .+....|..+..|+.+.+..
T Consensus 211 ~~f~~--~~~l~~i~~~~~-~~~i~~------------~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~ 273 (379)
T 4h09_A 211 YGFSY--GKNLKKITITSG-VTTLGD------------GAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK 273 (379)
T ss_dssp TTTTT--CSSCSEEECCTT-CCEECT------------TTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC
T ss_pred ccccc--ccccceeeeccc-eeEEcc------------ccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc
Confidence 11222 567777777544 222211 13466778888888765 44 56666777777777766543
Q ss_pred ccccccccCCCcccchhhhccceeeeecCccccCCCchhhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCccccccCC
Q 036049 288 LRYLQDVLSPSGKLLMTTYDYLLTMNIKGRMMAYNKIPDILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNNLQGHIP 367 (517)
Q Consensus 288 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 367 (517)
+..+ ....+....+|+.+.+.++.++..-...|.++.+|+.++|..+ ++....
T Consensus 274 i~~i--------------------------~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~ 326 (379)
T 4h09_A 274 VKTV--------------------------PYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQV 326 (379)
T ss_dssp CSEE--------------------------CTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECT
T ss_pred ceec--------------------------cccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHH
Confidence 1111 1111223567788888888887666778999999999999765 665667
Q ss_pred hhccCCCCCCeeeCCCCcccccCccccccCC
Q 036049 368 SCLGNLTNLESLDLSNNKFSGRIPQQLVELT 398 (517)
Q Consensus 368 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 398 (517)
.+|.++++|+.+.+..+ ++..-..+|.+..
T Consensus 327 ~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 327 YAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred HHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 78999999999999765 5544455665543
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.33 E-value=2.2e-07 Score=86.30 Aligned_cols=89 Identities=24% Similarity=0.246 Sum_probs=65.5
Q ss_pred hhhhh--hhCCCCCCc---ccCcccccCCCCCCeEeCcCccccc--cCChhccCCCCCCeeeCCCCcccccCccccccCC
Q 036049 326 DILAG--IILSNKSFD---GAIPASISNLKGLQVLNLHNNNLQG--HIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELT 398 (517)
Q Consensus 326 ~~L~~--L~Ls~n~l~---~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 398 (517)
+.|.. ++++.|... ..++....++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+.
T Consensus 141 p~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~ 218 (267)
T 3rw6_A 141 PDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIK 218 (267)
T ss_dssp HHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGT
T ss_pred cchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcc
Confidence 34444 666777433 1222223568899999999999986 4557778899999999999999865 3344444
Q ss_pred --CCCEEeccCCcccccCCC
Q 036049 399 --FLAFFNVSDNYLTGLIPQ 416 (517)
Q Consensus 399 --~L~~L~l~~N~l~~~~p~ 416 (517)
+|++|++++|++++.+|.
T Consensus 219 ~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 219 GLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp TSCCSEEECTTSTTGGGCSS
T ss_pred cCCcceEEccCCcCccccCc
Confidence 899999999999987774
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.15 E-value=6.1e-07 Score=77.25 Aligned_cols=82 Identities=11% Similarity=0.154 Sum_probs=43.8
Q ss_pred CCcEEEccCCCCcccCCccCCCCCCCcEEEccCCc-ccccccccccCC----ccccEEEccccc-ccccCchhhhcCCcc
Q 036049 114 SLKLLDLRSCGFWGKVPHSIGNFTRLQFLYLGFNN-FSGDLLGSIGNL----RSLEAIYMSKCN-FSGQITSSLRNLTEL 187 (517)
Q Consensus 114 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-i~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~p~~l~~l~~L 187 (517)
.|++||+++|.++..--..+.++++|++|+|++|. |++..-..++.+ ++|++|+|++|. ++..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555544333345556666666666663 554434444443 356666666653 553333344555556
Q ss_pred cccccccc
Q 036049 188 VVLDMAQN 195 (517)
Q Consensus 188 ~~L~l~~N 195 (517)
++|+++++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 66665554
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.00 E-value=1.1e-06 Score=75.70 Aligned_cols=84 Identities=11% Similarity=0.087 Sum_probs=68.8
Q ss_pred hhhhhhhCCCCCCcccCcccccCCCCCCeEeCcCcc-ccccCChhccCC----CCCCeeeCCCCc-ccccCccccccCCC
Q 036049 326 DILAGIILSNKSFDGAIPASISNLKGLQVLNLHNNN-LQGHIPSCLGNL----TNLESLDLSNNK-FSGRIPQQLVELTF 399 (517)
Q Consensus 326 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~ 399 (517)
..|+.||++++.++..--..+..+++|++|+|++|. +++.--..+..+ ++|++|+|++|. |++.--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 358999999999987766678899999999999994 776555556664 479999999984 88765566788999
Q ss_pred CCEEeccCCc
Q 036049 400 LAFFNVSDNY 409 (517)
Q Consensus 400 L~~L~l~~N~ 409 (517)
|++|++++++
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999986
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.44 E-value=3.7e-05 Score=67.44 Aligned_cols=15 Identities=13% Similarity=0.014 Sum_probs=7.6
Q ss_pred cCCCCCEEEcCCC-CC
Q 036049 85 KLVHLEWLNLALN-DF 99 (517)
Q Consensus 85 ~l~~L~~L~Ls~n-~l 99 (517)
+-+.|++|+|++| .|
T Consensus 39 ~n~~L~~L~L~~nn~i 54 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRV 54 (197)
T ss_dssp TCSSCCEEECTTCCSS
T ss_pred cCCCccEEECCCCCCC
Confidence 3445555555553 44
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.33 E-value=5.7e-05 Score=66.21 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=7.4
Q ss_pred ccCCCCCEEEcCCCCC
Q 036049 84 YKLVHLEWLNLALNDF 99 (517)
Q Consensus 84 ~~l~~L~~L~Ls~n~l 99 (517)
..-+.|+.|+|++|.|
T Consensus 67 ~~N~~L~~L~L~~n~i 82 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAI 82 (197)
T ss_dssp TTCSCCCEEECTTSCC
T ss_pred hhCCCcCEEEccCCCC
Confidence 3344444444444444
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.06 E-value=0.00087 Score=54.74 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=33.3
Q ss_pred eEeCcCcccc-ccCChhccCCCCCCeeeCCCCcccccCccccccCCCCCEEeccCCccc
Q 036049 354 VLNLHNNNLQ-GHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLAFFNVSDNYLT 411 (517)
Q Consensus 354 ~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 411 (517)
.++.+++.++ ..+|..+. ++|++|+|++|+|+...+..|..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666665 24454332 35677777777776555555666666666665555544
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.89 E-value=0.0017 Score=52.95 Aligned_cols=55 Identities=20% Similarity=0.220 Sum_probs=26.4
Q ss_pred EEEccCCCCc-ccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEcccccc
Q 036049 117 LLDLRSCGFW-GKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSKCNF 173 (517)
Q Consensus 117 ~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~n~l 173 (517)
.++.++++++ ..+|..+. .+|++|+|++|+|+...+..|..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4455555542 14443322 2455555555555544444455555555555555544
No 165
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=85.53 E-value=0.49 Score=29.66 Aligned_cols=14 Identities=36% Similarity=0.434 Sum_probs=6.1
Q ss_pred hhhhhhhhHHHHHH
Q 036049 471 IILIGYAGGLVAGL 484 (517)
Q Consensus 471 ~~~~~~~~~~~~~~ 484 (517)
.|+.++++++++++
T Consensus 12 ~IA~gVVgGv~~~~ 25 (44)
T 2ks1_B 12 SIATGMVGALLLLL 25 (44)
T ss_dssp SSTHHHHHHHHHHH
T ss_pred eEEeehhHHHHHHH
Confidence 44444444444333
No 166
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=83.07 E-value=2.3 Score=30.57 Aligned_cols=8 Identities=25% Similarity=0.650 Sum_probs=3.0
Q ss_pred hhhhhhhH
Q 036049 472 ILIGYAGG 479 (517)
Q Consensus 472 ~~~~~~~~ 479 (517)
++.+++++
T Consensus 13 Iv~gvi~g 20 (79)
T 2knc_B 13 VLLSVMGA 20 (79)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 33333333
No 167
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=77.77 E-value=0.98 Score=28.22 Aligned_cols=11 Identities=45% Similarity=0.812 Sum_probs=4.4
Q ss_pred hhhhhhhhHHH
Q 036049 471 IILIGYAGGLV 481 (517)
Q Consensus 471 ~~~~~~~~~~~ 481 (517)
.|+.+++++++
T Consensus 11 aIA~gVVgGv~ 21 (44)
T 2l2t_A 11 LIAAGVIGGLF 21 (44)
T ss_dssp HHHHHHHHHHH
T ss_pred eEEEeehHHHH
Confidence 34444444333
No 168
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=72.24 E-value=14 Score=26.38 Aligned_cols=32 Identities=9% Similarity=-0.051 Sum_probs=13.1
Q ss_pred hhhhhHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 036049 474 IGYAGGLVAGLVLGFNFSTGIIGWILEKLGRQ 505 (517)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (517)
.+++++++++++++.++++..++++.....|+
T Consensus 11 ~~Iv~gvi~gilliGllllliwk~~~~i~Drr 42 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAALLIWKLLITIHDRK 42 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555544443333333333333333333
No 169
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=69.86 E-value=5 Score=25.04 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=7.7
Q ss_pred hhhHHHHHHHHHHHHh
Q 036049 476 YAGGLVAGLVLGFNFS 491 (517)
Q Consensus 476 ~~~~~~~~~~~~~~~~ 491 (517)
++++++.++++++++.
T Consensus 12 IA~gVVgGv~~v~ii~ 27 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVG 27 (44)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred EEEeehHHHHHHHHHH
Confidence 4555555454444443
No 170
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=50.82 E-value=20 Score=19.37 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=6.7
Q ss_pred HHHHHHHHhh
Q 036049 495 IGWILEKLGR 504 (517)
Q Consensus 495 ~~~~~~~~~~ 504 (517)
..|.+++.++
T Consensus 22 gfwlfkylqk 31 (32)
T 2lx0_A 22 GFWLFKYLQK 31 (32)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhc
Confidence 5577777754
No 171
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=43.61 E-value=5.8 Score=26.85 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=6.6
Q ss_pred hhhhhHHHHHHHHHHHH
Q 036049 474 IGYAGGLVAGLVLGFNF 490 (517)
Q Consensus 474 ~~~~~~~~~~~~~~~~~ 490 (517)
+++++++.+++++++.+
T Consensus 12 ivlGg~~~lll~~glcI 28 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGI 28 (70)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 33444433333333333
No 172
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=41.00 E-value=54 Score=24.45 Aligned_cols=43 Identities=14% Similarity=0.070 Sum_probs=25.1
Q ss_pred ccCCccCCCCCCCcEEEccCCcccccccccccCCccccEEEccc
Q 036049 127 GKVPHSIGNFTRLQFLYLGFNNFSGDLLGSIGNLRSLEAIYMSK 170 (517)
Q Consensus 127 ~~~p~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~l~~L~~L~L~~ 170 (517)
..-...|.++.+|+.+.+-.+ ++.+...+|.++.+|+.+.+..
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 333455666666766666553 3334455666666666666654
No 173
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=36.26 E-value=77 Score=23.56 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=20.9
Q ss_pred cccccCCCCCCeEeCcCccccccCChhccCCCCCCeeeCCC
Q 036049 343 PASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN 383 (517)
Q Consensus 343 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 383 (517)
...|.++.+|+.+.|-.+ ++..-..+|.++.+|+.+.+..
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 345555666666665543 2223344555556666555544
No 174
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=35.46 E-value=30 Score=22.56 Aligned_cols=12 Identities=33% Similarity=0.390 Sum_probs=4.8
Q ss_pred hhhhhhhHHHHH
Q 036049 472 ILIGYAGGLVAG 483 (517)
Q Consensus 472 ~~~~~~~~~~~~ 483 (517)
+++++.+|+++.
T Consensus 12 Ii~svl~GLLLL 23 (54)
T 2l8s_A 12 ILLSAFAGLLLL 23 (54)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
No 175
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=31.50 E-value=21 Score=21.65 Aligned_cols=12 Identities=33% Similarity=0.440 Sum_probs=5.2
Q ss_pred hhhhhhhhHHHH
Q 036049 471 IILIGYAGGLVA 482 (517)
Q Consensus 471 ~~~~~~~~~~~~ 482 (517)
.++.++++++++
T Consensus 14 ~I~~~vv~Gv~l 25 (41)
T 2k9y_A 14 AVIGGVAVGVVL 25 (41)
T ss_dssp HHHHHHHHHHHH
T ss_pred EEEeehhHHHHH
Confidence 344444444443
No 176
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=30.81 E-value=42 Score=21.91 Aligned_cols=11 Identities=45% Similarity=0.978 Sum_probs=4.4
Q ss_pred hhhhhhhHHHH
Q 036049 472 ILIGYAGGLVA 482 (517)
Q Consensus 472 ~~~~~~~~~~~ 482 (517)
+++++.+|+++
T Consensus 15 Ii~svl~GLll 25 (54)
T 2knc_A 15 VLVGVLGGLLL 25 (54)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444433
Done!