BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036050
         (393 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SB42|MDA1_ARATH Mediator-associated protein 1 OS=Arabidopsis thaliana GN=At4g25210
           PE=1 SV=1
          Length = 368

 Score =  132 bits (332), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 111/314 (35%), Positives = 165/314 (52%), Gaps = 41/314 (13%)

Query: 99  KPIATKPMEETP--KVTKPRSKPLSSKRPNETEESAKDSKRAKKKSPEADPDEEEQKKP- 155
           KP+ TKP+ ET     T P S   ++KRP   +E+A ++ + +K S     D E  KKP 
Sbjct: 74  KPVGTKPIPETSGSAATVPESS--TAKRP--LKEAAPEAIKKQKTS-----DTEHVKKPI 124

Query: 156 ---------GEDTKKQLFQRLWSEDDEIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSL 206
                     ED KK +FQRL+SE DEI +L+G+ D+++ KG DP +D+  F  Y+K  +
Sbjct: 125 TNDEVKKISSEDAKK-MFQRLFSETDEIALLQGIIDFTSTKG-DPYEDIDAFCIYVKKLI 182

Query: 207 HVDVSKAQLVDKIRRLKKKFENNLGKGKKKG---EDRTFSKPHEQKAYDLSKKFWGGEST 263
             D +K Q+V K++RLKKKF N +    KKG   +D  F+K  EQK ++LS+K WG  S 
Sbjct: 183 DFDATKNQIVTKLQRLKKKFNNAVKNSLKKGKTEDDIEFAKDLEQKGFELSRKIWG--SN 240

Query: 264 GGVI---ESAAKSNGKPKKNQNQKGNSKSLAALKAELTDGAEGDKMEVDNDKGNAVNKTV 320
           G ++    S  K  G P   + +      L A         E  K E    +   VN  +
Sbjct: 241 GVLVTGKSSRKKVGGTPAPKEMK------LVAHSTPKKQQEEAKKPE--RTEAKVVNTGL 292

Query: 321 NLKDKDKVLFDKSLG-VAGLEEFVLHDGLDMI-EGAKKAELEERWKELQVAQLELFLQRN 378
           ++  +     +   G   GL+E  L      + +GA+K E+EE+WK+L+  Q EL LQR+
Sbjct: 293 SIGKEIASFLNADNGSSCGLDESTLTAVWAKVADGAEKREVEEKWKKLKAKQFELCLQRS 352

Query: 379 ELIKEQAKLILEAM 392
            L+ E AK+I +A 
Sbjct: 353 GLVNETAKMIFKAY 366


>sp|Q01320|TOP2A_MOUSE DNA topoisomerase 2-alpha OS=Mus musculus GN=Top2a PE=1 SV=2
          Length = 1528

 Score = 32.7 bits (73), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 39   DGEEDAQEPAKTQSPPPQKSHKQSAVKKPEATPATPQTKSLSSGESESESESESEPDATP 98
            D E D          PP++  ++SA  K + T      +  S  + + E E     DATP
Sbjct: 1292 DSESDVSSNESNVDVPPRQKEQRSAAAKAKFTVDLDSDEDFSGLDEKDEDEDFLPLDATP 1351

Query: 99   KPIATKPMEETPKVTKPRSKPLSSKRPNETEESAKDSKRAKKKSPEAD-PDEEEQKKPGE 157
             P A  P + T K  K +    SS    + E   KDS  A    P AD P E EQ KP +
Sbjct: 1352 -PKAKIPPKNTKKALKTQG---SSMSVVDLESDVKDSVPASPGVPAADFPAETEQSKPSK 1407

Query: 158  DT 159
             T
Sbjct: 1408 KT 1409


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.300    0.122    0.328 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159,115,346
Number of Sequences: 539616
Number of extensions: 7484436
Number of successful extensions: 77769
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 3835
Number of HSP's that attempted gapping in prelim test: 46192
Number of HSP's gapped (non-prelim): 21277
length of query: 393
length of database: 191,569,459
effective HSP length: 119
effective length of query: 274
effective length of database: 127,355,155
effective search space: 34895312470
effective search space used: 34895312470
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 62 (28.5 bits)