Query 036050
Match_columns 393
No_of_seqs 146 out of 173
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 15:00:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036050.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036050hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebi_A DNA binding protein GT- 79.3 5.5 0.00019 31.1 6.8 62 166-231 5-71 (86)
2 2roh_A RTBP1, telomere binding 58.0 86 0.0029 26.5 11.3 85 164-262 30-115 (122)
3 2cu7_A KIAA1915 protein; nucle 57.3 13 0.00045 28.0 4.5 63 164-246 8-70 (72)
4 1ug2_A 2610100B20RIK gene prod 52.3 38 0.0013 27.7 6.5 57 164-230 32-88 (95)
5 1x58_A Hypothetical protein 49 51.5 4.7 0.00016 30.6 1.0 19 165-183 8-26 (62)
6 3osg_A MYB21; transcription-DN 46.8 41 0.0014 27.8 6.3 75 160-257 6-80 (126)
7 1wgx_A KIAA1903 protein; MYB D 44.8 10 0.00035 29.6 2.0 49 165-222 8-56 (73)
8 2hzd_A Transcriptional enhance 44.7 48 0.0017 26.4 5.9 63 165-228 6-77 (82)
9 2yum_A ZZZ3 protein, zinc fing 41.9 18 0.0006 27.3 2.9 62 163-238 6-67 (75)
10 2cqq_A RSGI RUH-037, DNAJ homo 39.1 50 0.0017 25.2 5.1 60 165-240 8-67 (72)
11 3kmi_A Putative membrane prote 35.4 49 0.0017 29.4 5.2 59 172-230 83-143 (177)
12 3sjm_A Telomeric repeat-bindin 34.7 73 0.0025 23.6 5.3 47 166-223 12-59 (64)
13 2ckx_A NGTRF1, telomere bindin 32.0 67 0.0023 25.2 5.0 54 166-227 1-54 (83)
14 3osg_A MYB21; transcription-DN 32.0 45 0.0015 27.6 4.2 49 166-227 63-111 (126)
15 2cjj_A Radialis; plant develop 31.8 55 0.0019 26.3 4.5 63 164-240 7-69 (93)
16 2k9n_A MYB24; R2R3 domain, DNA 31.1 87 0.003 25.0 5.7 52 165-229 53-104 (107)
17 2k9n_A MYB24; R2R3 domain, DNA 30.5 77 0.0026 25.3 5.2 72 166-260 2-73 (107)
18 2juh_A Telomere binding protei 30.2 2.2E+02 0.0074 24.0 8.1 86 162-260 14-99 (121)
19 2elk_A SPCC24B10.08C protein; 28.0 29 0.00098 25.1 2.0 34 162-202 6-39 (58)
20 2yus_A SWI/SNF-related matrix- 27.9 36 0.0012 26.4 2.6 46 164-229 17-62 (79)
21 1sb0_B Protein C-MYB; CREB-bin 27.8 34 0.0012 21.5 2.0 16 364-379 1-16 (26)
22 2lr8_A CAsp8-associated protei 32.9 13 0.00046 28.8 0.0 55 163-228 12-66 (70)
23 1h8a_C AMV V-MYB, MYB transfor 26.6 1E+02 0.0035 25.3 5.5 73 165-260 27-99 (128)
24 1gv2_A C-MYB, MYB proto-oncoge 26.2 72 0.0024 25.2 4.3 71 165-257 4-74 (105)
25 1x41_A Transcriptional adaptor 25.4 36 0.0012 24.6 2.1 51 162-231 5-55 (60)
26 3twe_A Alpha4H; unknown functi 23.4 61 0.0021 20.2 2.5 15 213-227 11-25 (27)
27 2aje_A Telomere repeat-binding 22.4 1.6E+02 0.0053 24.2 5.7 54 162-226 10-66 (105)
28 2kmu_A ATP-dependent DNA helic 21.3 68 0.0023 23.7 2.9 33 182-225 19-53 (56)
29 3ra3_B P2F; coiled coil domain 21.2 23 0.00078 22.3 0.2 12 218-229 1-12 (28)
30 1wi9_A Protein C20ORF116 homol 20.3 72 0.0024 24.8 3.0 44 173-225 5-48 (72)
31 2oku_A Acyl-COA dehydrogenase 20.2 53 0.0018 28.3 2.4 60 198-258 14-76 (131)
No 1
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=79.33 E-value=5.5 Score=31.08 Aligned_cols=62 Identities=19% Similarity=0.275 Sum_probs=41.6
Q ss_pred cCCCchhHHHHHHHHHHH--HHhhCCCCccchHHHHHHHHhhc---ccCCCHHHHHHHHHHHHHHHHhhhc
Q 036050 166 RLWSEDDEIVVLKGMTDY--STKKGLDPNQDMQGFYDYIKNSL---HVDVSKAQLVDKIRRLKKKFENNLG 231 (393)
Q Consensus 166 R~WS~eDEI~IL~gli~~--~~~~G~~P~~D~~af~d~ik~sl---~~~~s~~QL~~KiRrLKkKY~~~~~ 231 (393)
..|+.+.=+.||+..-++ .-..|. .. ..+++.|-..| .+..|..|..+|++.|+++|..+..
T Consensus 5 ~~Wt~~Et~~Li~~~~e~~~~f~~~~-~~---~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~ 71 (86)
T 2ebi_A 5 ETWVQDETRSLIMFRRGMDGLFNTSK-SN---KHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKH 71 (86)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHSS-CC---HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHccc-cc---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 469996656666665442 212333 11 44555555554 4789999999999999999998754
No 2
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=58.00 E-value=86 Score=26.52 Aligned_cols=85 Identities=11% Similarity=0.172 Sum_probs=50.0
Q ss_pred cccCCCchhHHHHHHHHHHHHHhhCCCCccchHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCCCC
Q 036050 164 FQRLWSEDDEIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSLHVDVSKAQLVDKIRRLKKKFENNLGKGKKKGEDRTFS 243 (393)
Q Consensus 164 fqR~WS~eDEI~IL~gli~~~~~~G~~P~~D~~af~d~ik~sl~~~~s~~QL~~KiRrLKkKY~~~~~K~~k~G~~p~f~ 243 (393)
-.+-||.+++-.|++|+-.| |.- .|..........+ .+=|..||.+|-|.|.++-...- .+ +.| .+.
T Consensus 30 ~r~~WT~EEd~~L~~gV~k~----G~g---~W~~I~~~~~~~~-~~RT~vdlKdRWrnllk~~~~~p-~~-kr~---~~~ 96 (122)
T 2roh_A 30 IRRPFTVAEVELLVEAVEHL----GTG---RWRDVKFRAFENV-HHRTYVDLKDKWKTLVHTASIAP-QQ-RRG---APV 96 (122)
T ss_dssp CCCCCCHHHHHHHHHHHHHH----SSS---CHHHHHHHHHSSS-CCCCHHHHHHHHHHHHHHHHSCT-TT-CCC---SSC
T ss_pred CCCCCCHHHHHHHHHHHHHH----CCC---ChHHHHHHhcccc-CCCCHHHHHHHHHHHHhhccCCc-cc-cCC---CCC
Confidence 46789999999998888766 532 3433222211111 35688899999999876543322 22 444 223
Q ss_pred Chh-HHHHHHHHhhhcCCCC
Q 036050 244 KPH-EQKAYDLSKKFWGGES 262 (393)
Q Consensus 244 ~~H-D~~~feLSk~IWG~~~ 262 (393)
-.. +.+|+.+= ..||+..
T Consensus 97 p~e~~~~v~~~h-~~~g~~~ 115 (122)
T 2roh_A 97 PQELLDRVLAAQ-AYWSVDS 115 (122)
T ss_dssp CHHHHHHHHHHH-HHHHSSC
T ss_pred CHHHHHHHHHHH-HHHhhHH
Confidence 333 46777654 4588643
No 3
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=57.29 E-value=13 Score=27.97 Aligned_cols=63 Identities=13% Similarity=0.238 Sum_probs=36.3
Q ss_pred cccCCCchhHHHHHHHHHHHHHhhCCCCccchHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCCCC
Q 036050 164 FQRLWSEDDEIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSLHVDVSKAQLVDKIRRLKKKFENNLGKGKKKGEDRTFS 243 (393)
Q Consensus 164 fqR~WS~eDEI~IL~gli~~~~~~G~~P~~D~~af~d~ik~sl~~~~s~~QL~~KiRrLKkKY~~~~~K~~k~G~~p~f~ 243 (393)
-...||.+++..||+++..| |. +|.....+|-+ =|..|+.. ||.+...+..+.|..+...
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~----G~----~W~~Ia~~~~~-----Rt~~q~k~-------r~~~~l~~~~~~g~~~~~~ 67 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKF----GR----RWTKISKLIGS-----RTVLQVKS-------YARQYFKNKVKCGLDKETP 67 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHT----CS----CHHHHHHHHSS-----SCHHHHHH-------HHHHHHHHHSCSCTTCCCS
T ss_pred CCCCCCHHHHHHHHHHHHHH----Cc----CHHHHHHHcCC-----CCHHHHHH-------HHHHHHHHHHhcCCCCCcc
Confidence 34579999999999988765 53 56555444433 35666644 4443333322456555444
Q ss_pred Chh
Q 036050 244 KPH 246 (393)
Q Consensus 244 ~~H 246 (393)
.-|
T Consensus 68 si~ 70 (72)
T 2cu7_A 68 NQK 70 (72)
T ss_dssp CCC
T ss_pred ccc
Confidence 333
No 4
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=52.31 E-value=38 Score=27.67 Aligned_cols=57 Identities=19% Similarity=0.399 Sum_probs=40.3
Q ss_pred cccCCCchhHHHHHHHHHHHHHhhCCCCccchHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhhh
Q 036050 164 FQRLWSEDDEIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSLHVDVSKAQLVDKIRRLKKKFENNL 230 (393)
Q Consensus 164 fqR~WS~eDEI~IL~gli~~~~~~G~~P~~D~~af~d~ik~sl~~~~s~~QL~~KiRrLKkKY~~~~ 230 (393)
.-=+||.++...||+. | ++.|..|.. +. +|-..| -+-+.+|+.+..+-|-+=|....
T Consensus 32 ~VvlWTRe~DR~IL~~---c-Q~~G~s~~t-Fa----~iA~~L-~Nks~nqV~~RFq~Lm~Lf~~~~ 88 (95)
T 1ug2_A 32 KVVLWTREADRVILTM---C-QEQGAQPHT-FS----VISQQL-GNKTPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp CCSSSCHHHHHHHHHH---H-HHTTSCTTT-HH----HHHHHH-SSCCHHHHHHHHHHHHHHHHHCS
T ss_pred EEEEeccccCHHHHHH---H-HhcCCChhH-HH----HHHHHH-ccCCHHHHHHHHHHHHHHHHHHh
Confidence 4668999999999975 3 567755442 22 222222 14589999999999999998775
No 5
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=51.50 E-value=4.7 Score=30.62 Aligned_cols=19 Identities=5% Similarity=0.328 Sum_probs=16.7
Q ss_pred ccCCCchhHHHHHHHHHHH
Q 036050 165 QRLWSEDDEIVVLKGMTDY 183 (393)
Q Consensus 165 qR~WS~eDEI~IL~gli~~ 183 (393)
.+-||++++-.||+|+-.|
T Consensus 8 r~~WT~EE~~~L~~gV~k~ 26 (62)
T 1x58_A 8 RKDFTKEEVNYLFHGVKTM 26 (62)
T ss_dssp SSSCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999877
No 6
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=46.80 E-value=41 Score=27.84 Aligned_cols=75 Identities=8% Similarity=0.178 Sum_probs=47.6
Q ss_pred cccccccCCCchhHHHHHHHHHHHHHhhCCCCccchHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhhhcccccCCCC
Q 036050 160 KKQLFQRLWSEDDEIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSLHVDVSKAQLVDKIRRLKKKFENNLGKGKKKGED 239 (393)
Q Consensus 160 kk~~fqR~WS~eDEI~IL~gli~~~~~~G~~P~~D~~af~d~ik~sl~~~~s~~QL~~KiRrLKkKY~~~~~K~~k~G~~ 239 (393)
++..-...||.++.-.|++++..| |. +|.....+|- .=+..| .+.||.+.+....++|
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~----G~----~W~~Ia~~~~-----~Rt~~q-------cr~Rw~~~l~p~~~~~-- 63 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQH----GS----DWKMIAATFP-----NRNARQ-------CRDRWKNYLAPSISHT-- 63 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHH----TT----CHHHHHHTCT-----TCCHHH-------HHHHHHHHTSTTSCCS--
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHh----CC----CHHHHHHHcC-----CCCHHH-------HHHHHhhhcccccccc--
Confidence 344456689999998888888766 53 5654443332 224444 5667777664432444
Q ss_pred CCCCChhHHHHHHHHhhh
Q 036050 240 RTFSKPHEQKAYDLSKKF 257 (393)
Q Consensus 240 p~f~~~HD~~~feLSk~I 257 (393)
.++..-|..|.+|-...
T Consensus 64 -~WT~eEd~~L~~~v~~~ 80 (126)
T 3osg_A 64 -PWTAEEDALLVQKIQEY 80 (126)
T ss_dssp -CCCHHHHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHH
Confidence 57888899988887654
No 7
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=44.78 E-value=10 Score=29.55 Aligned_cols=49 Identities=14% Similarity=0.263 Sum_probs=29.5
Q ss_pred ccCCCchhHHHHHHHHHHHHHhhCCCCccchHHHHHHHHhhcccCCCHHHHHHHHHHH
Q 036050 165 QRLWSEDDEIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSLHVDVSKAQLVDKIRRL 222 (393)
Q Consensus 165 qR~WS~eDEI~IL~gli~~~~~~G~~P~~D~~af~d~ik~sl~~~~s~~QL~~KiRrL 222 (393)
...||.+++..|++||+.|-. + .| .+.+.|-..+.- =|..|+..+...|
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~--~-tp-----~rWe~IA~~V~g-KT~eE~~~hY~~l 56 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPK--H-KP-----GFWSEVAAAVGS-RSPEECQRKYMEN 56 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCS--S-SS-----SHHHHHHHHTTT-SCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCC--C-Cc-----cHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 346999999999999998832 2 12 233344443322 4666766444444
No 8
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=44.70 E-value=48 Score=26.36 Aligned_cols=63 Identities=19% Similarity=0.282 Sum_probs=43.4
Q ss_pred ccCCCchhHHHHHHHHHHHH---------HhhCCCCccchHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHh
Q 036050 165 QRLWSEDDEIVVLKGMTDYS---------TKKGLDPNQDMQGFYDYIKNSLHVDVSKAQLVDKIRRLKKKFEN 228 (393)
Q Consensus 165 qR~WS~eDEI~IL~gli~~~---------~~~G~~P~~D~~af~d~ik~sl~~~~s~~QL~~KiRrLKkKY~~ 228 (393)
.-+|+++=|-.+++||.-|. ...|..|..+.. .-++|...-...-+..|+..-|--||++...
T Consensus 6 e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNel-Is~yI~~~tGk~RtrKQVSShiQvlk~~~~~ 77 (82)
T 2hzd_A 6 EGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNEL-IARYIKLRTGKTRTRKQVSSHIQVLARRKSR 77 (82)
T ss_dssp SCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHH-HHHHHHHHHSCCCCSHHHHHHHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHH-HHHHHHHHHcccCCccchhHHHHHHHHHHhh
Confidence 35899999999999999995 223444443221 2244554445667889999999999887654
No 9
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.86 E-value=18 Score=27.34 Aligned_cols=62 Identities=16% Similarity=0.216 Sum_probs=34.6
Q ss_pred ccccCCCchhHHHHHHHHHHHHHhhCCCCccchHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhhhcccccCCC
Q 036050 163 LFQRLWSEDDEIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSLHVDVSKAQLVDKIRRLKKKFENNLGKGKKKGE 238 (393)
Q Consensus 163 ~fqR~WS~eDEI~IL~gli~~~~~~G~~P~~D~~af~d~ik~sl~~~~s~~QL~~KiRrLKkKY~~~~~K~~k~G~ 238 (393)
.....||.+++..||+++..|-..+ ....+|.....+|.+ =|..|+ |.||.+.+.+..+.|.
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~--~~~~~W~~IA~~~~~-----Rt~~qc-------r~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEE--VESRRWQKIADELGN-----RTAKQV-------ASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCS--CHHHHHHHHHHHHSS-----SCHHHH-------HHHHHHHHGGGSTTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCC--CCcccHHHHHHHhCC-----CCHHHH-------HHHHHHHHHHHHhcCC
Confidence 4556899999999999987763211 001355555444432 355554 4555444434325553
No 10
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=39.11 E-value=50 Score=25.25 Aligned_cols=60 Identities=22% Similarity=0.358 Sum_probs=38.5
Q ss_pred ccCCCchhHHHHHHHHHHHHHhhCCCCccchHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhhhcccccCCCCC
Q 036050 165 QRLWSEDDEIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSLHVDVSKAQLVDKIRRLKKKFENNLGKGKKKGEDR 240 (393)
Q Consensus 165 qR~WS~eDEI~IL~gli~~~~~~G~~P~~D~~af~d~ik~sl~~~~s~~QL~~KiRrLKkKY~~~~~K~~k~G~~p 240 (393)
...||.++.-.|.++|+-|- .|+ | .-|. .|-..| .-|..|+..+...|.... .+ ..|.+|
T Consensus 8 ~~~WT~eE~k~fe~al~~~p--~~t-~-~RW~----~IA~~l--gRt~~eV~~~y~~L~~d~-----~~-~~G~vp 67 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFP--GGT-P-GRWE----KIAHEL--GRSVTDVTTKAKQLKDSV-----TC-SPGMVS 67 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSC--TTC-T-THHH----HHHHHH--TSCHHHHHHHHHHHHHSC-----CC-CSCCCS
T ss_pred CCCCCHHHHHHHHHHHHHCC--CCC-C-cHHH----HHHHHh--CCCHHHHHHHHHHHHHhc-----Cc-cCCCCC
Confidence 45799999999999998882 221 2 2233 333333 258889988888886652 12 467666
No 11
>3kmi_A Putative membrane protein COG4129; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.96A {Clostridium difficile}
Probab=35.37 E-value=49 Score=29.43 Aligned_cols=59 Identities=15% Similarity=0.249 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHhhCCCCc-c-chHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhhh
Q 036050 172 DEIVVLKGMTDYSTKKGLDPN-Q-DMQGFYDYIKNSLHVDVSKAQLVDKIRRLKKKFENNL 230 (393)
Q Consensus 172 DEI~IL~gli~~~~~~G~~P~-~-D~~af~d~ik~sl~~~~s~~QL~~KiRrLKkKY~~~~ 230 (393)
..+.||+.|..+...--..|. . .++.|+..+...++..-+...+.++|..|+..|+..-
T Consensus 83 ~Q~~iL~~m~~~i~~i~~~~~q~~~iA~~~~~~a~~~~e~n~a~~ll~~L~~l~~~fr~~~ 143 (177)
T 3kmi_A 83 SQRDILENLYSYVSQLNSTPPQAHILSAFIHKIGYTEFEAETGNLLLEELKRLMISMKNQP 143 (177)
T ss_dssp HHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHhcCC
Confidence 357899999999776544443 2 5688999999999999999999999999999998764
No 12
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=34.66 E-value=73 Score=23.55 Aligned_cols=47 Identities=19% Similarity=0.396 Sum_probs=29.3
Q ss_pred cCCCchhHHHHHHHHHHHHHhhCCCCccchHHHHHHHHhhcc-cCCCHHHHHHHHHHHH
Q 036050 166 RLWSEDDEIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSLH-VDVSKAQLVDKIRRLK 223 (393)
Q Consensus 166 R~WS~eDEI~IL~gli~~~~~~G~~P~~D~~af~d~ik~sl~-~~~s~~QL~~KiRrLK 223 (393)
+.||.+++..|++++..| |. .+|..... .+. ..=|..|+.++-+.|.
T Consensus 12 ~~WT~eED~~L~~~V~~~----G~---~~W~~Ia~----~~~~~~Rt~~qcr~Rw~nl~ 59 (64)
T 3sjm_A 12 QKWTVEESEWVKAGVQKY----GE---GNWAAISK----NYPFVNRTAVMIKDRWRTMK 59 (64)
T ss_dssp CCCCHHHHHHHHHHHHHH----CT---TCHHHHHH----HSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcc----CC---CchHHHHh----hcCCCCCCHHHHHHHHHHHh
Confidence 469999999999888666 52 24543332 222 2347778766666554
No 13
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=32.02 E-value=67 Score=25.19 Aligned_cols=54 Identities=15% Similarity=0.080 Sum_probs=34.1
Q ss_pred cCCCchhHHHHHHHHHHHHHhhCCCCccchHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHH
Q 036050 166 RLWSEDDEIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSLHVDVSKAQLVDKIRRLKKKFE 227 (393)
Q Consensus 166 R~WS~eDEI~IL~gli~~~~~~G~~P~~D~~af~d~ik~sl~~~~s~~QL~~KiRrLKkKY~ 227 (393)
|-||.+.+-.|++|+-.| |.--..++...|. ..-..=|..||.+|-|.|.++-.
T Consensus 1 r~WT~eEd~~L~~gv~k~----G~g~W~~I~~~~~----~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHL----GTGRWRDVKMRAF----DNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHH----CSSCHHHHHHHHC----TTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH----CCCCcHHHHHhhc----cccCCCCHHHHHHHHHHHHHhcc
Confidence 579999999999888766 5322223332210 01134588899999998876443
No 14
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=31.97 E-value=45 Score=27.58 Aligned_cols=49 Identities=10% Similarity=0.376 Sum_probs=33.6
Q ss_pred cCCCchhHHHHHHHHHHHHHhhCCCCccchHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHH
Q 036050 166 RLWSEDDEIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSLHVDVSKAQLVDKIRRLKKKFE 227 (393)
Q Consensus 166 R~WS~eDEI~IL~gli~~~~~~G~~P~~D~~af~d~ik~sl~~~~s~~QL~~KiRrLKkKY~ 227 (393)
.-||.+++..||+++..| |. .|. .|...| ..=|..|+.++.+.|.+|+.
T Consensus 63 ~~WT~eEd~~L~~~v~~~----G~----~W~----~Ia~~l-~gRt~~~~k~rw~~l~~k~~ 111 (126)
T 3osg_A 63 TPWTAEEDALLVQKIQEY----GR----QWA----IIAKFF-PGRTDIHIKNRWVTISNKLG 111 (126)
T ss_dssp SCCCHHHHHHHHHHHHHH----CS----CHH----HHHTTS-TTCCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHH----Cc----CHH----HHHHHc-CCCCHHHHHHHHHHHHHhcC
Confidence 369999999999988776 42 343 333333 24578888888777777654
No 15
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=31.77 E-value=55 Score=26.31 Aligned_cols=63 Identities=11% Similarity=0.243 Sum_probs=38.7
Q ss_pred cccCCCchhHHHHHHHHHHHHHhhCCCCccchHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhhhcccccCCCCC
Q 036050 164 FQRLWSEDDEIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSLHVDVSKAQLVDKIRRLKKKFENNLGKGKKKGEDR 240 (393)
Q Consensus 164 fqR~WS~eDEI~IL~gli~~~~~~G~~P~~D~~af~d~ik~sl~~~~s~~QL~~KiRrLKkKY~~~~~K~~k~G~~p 240 (393)
....||.+++..|+++|..|-..+ | ..|. .|-..|. .=|..|+......|-.....+ ..|.+|
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~---~-~rW~----~IA~~vp-GRT~~q~k~ry~~l~~dv~~i-----esg~vp 69 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDT---P-DRWA----NVARAVE-GRTPEEVKKHYEILVEDIKYI-----ESGKVP 69 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTC---T-THHH----HHHHHST-TCCHHHHHHHHHHHHHHHHHH-----HHSSCC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCC---C-chHH----HHHHHcC-CCCHHHHHHHHHHHHHHHHHh-----hcCCCC
Confidence 456799999999999998883321 1 2333 3333332 357788877777766554332 456655
No 16
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=31.12 E-value=87 Score=24.99 Aligned_cols=52 Identities=10% Similarity=0.337 Sum_probs=36.1
Q ss_pred ccCCCchhHHHHHHHHHHHHHhhCCCCccchHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhh
Q 036050 165 QRLWSEDDEIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSLHVDVSKAQLVDKIRRLKKKFENN 229 (393)
Q Consensus 165 qR~WS~eDEI~IL~gli~~~~~~G~~P~~D~~af~d~ik~sl~~~~s~~QL~~KiRrLKkKY~~~ 229 (393)
..-||.+++..||+++..| |. .+.....+| ..=|.+|+.++.+.|.++....
T Consensus 53 ~~~WT~eEd~~L~~~~~~~----G~----~W~~Ia~~l-----~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEY----GP----KWNKISKFL-----KNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHT----CS----CHHHHHHHH-----SSSCHHHHHHHHHHHHHHHHSS
T ss_pred ccccCHHHHHHHHHHHHHh----Cc----CHHHHHHHC-----CCCCHHHHHHHHHHHHhhHHHh
Confidence 3579999999999887665 52 455444443 2458889988888887775443
No 17
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=30.51 E-value=77 Score=25.30 Aligned_cols=72 Identities=11% Similarity=0.243 Sum_probs=45.5
Q ss_pred cCCCchhHHHHHHHHHHHHHhhCCCCccchHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCh
Q 036050 166 RLWSEDDEIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSLHVDVSKAQLVDKIRRLKKKFENNLGKGKKKGEDRTFSKP 245 (393)
Q Consensus 166 R~WS~eDEI~IL~gli~~~~~~G~~P~~D~~af~d~ik~sl~~~~s~~QL~~KiRrLKkKY~~~~~K~~k~G~~p~f~~~ 245 (393)
..||.+++-.|++++..| |. .++.....+|-+ -+..|+ +.||.+.+....+.| .++..
T Consensus 2 ~~Wt~eED~~L~~~v~~~----g~---~~W~~Ia~~~~~-----Rt~~qc-------r~Rw~~~L~p~i~~~---~WT~e 59 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRY----GA---KDWIRISQLMIT-----RNPRQC-------RERWNNYINPALRTD---PWSPE 59 (107)
T ss_dssp CSSCHHHHHHHHHHHHHH----CS---SCHHHHHHHTTT-----SCHHHH-------HHHHHHHSSSCCTTC---CCCHH
T ss_pred CCCCHHHHHHHHHHHHHH----CC---CCHHHHhhhcCC-----CCHHHH-------HHHHHHHHccccccc---ccCHH
Confidence 369999998888888766 42 356555444432 244554 557777664432444 57888
Q ss_pred hHHHHHHHHhhhcCC
Q 036050 246 HEQKAYDLSKKFWGG 260 (393)
Q Consensus 246 HD~~~feLSk~IWG~ 260 (393)
-|..|++|-.. .|.
T Consensus 60 Ed~~L~~~~~~-~G~ 73 (107)
T 2k9n_A 60 EDMLLDQKYAE-YGP 73 (107)
T ss_dssp HHHHHHHHHHH-TCS
T ss_pred HHHHHHHHHHH-hCc
Confidence 88888887664 453
No 18
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=30.21 E-value=2.2e+02 Score=23.97 Aligned_cols=86 Identities=12% Similarity=0.174 Sum_probs=48.7
Q ss_pred cccccCCCchhHHHHHHHHHHHHHhhCCCCccchHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCC
Q 036050 162 QLFQRLWSEDDEIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSLHVDVSKAQLVDKIRRLKKKFENNLGKGKKKGEDRT 241 (393)
Q Consensus 162 ~~fqR~WS~eDEI~IL~gli~~~~~~G~~P~~D~~af~d~ik~sl~~~~s~~QL~~KiRrLKkKY~~~~~K~~k~G~~p~ 241 (393)
+.-.+-||.+++-.|++|+-.| |. ..|......+... -.+=|..||.+|-|.|.++-.. ...+ +.|. .
T Consensus 14 rr~r~~WT~EEd~~L~~gV~k~----G~---G~W~~Ia~~~~~~-f~~RT~v~lKdRWrnllk~~~~-~p~~-krg~--~ 81 (121)
T 2juh_A 14 RRIRRPFSVAEVEALVEAVEHL----GT---GRWRDVKMRAFDN-ADHRTYVDLKDKWKTLVHTASI-APQQ-RRGE--P 81 (121)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHH----GG---GCHHHHHHHHCSC-CSSCCSHHHHHHHHHHHHHHHT-CSTT-CCCS--C
T ss_pred CCCCCCCCHHHHHHHHHHHHHH----CC---CCHHHHHHHhccc-cCCCCHHHHHHHHHHHHhhhcc-CCcc-cCCC--C
Confidence 3356789999999999998777 31 1343222221111 1345788999999998875322 1122 4442 2
Q ss_pred CCChhHHHHHHHHhhhcCC
Q 036050 242 FSKPHEQKAYDLSKKFWGG 260 (393)
Q Consensus 242 f~~~HD~~~feLSk~IWG~ 260 (393)
++..-+.+|+.|=. .||+
T Consensus 82 ~p~e~~~rv~~~h~-~~gn 99 (121)
T 2juh_A 82 VPQDLLDRVLAAHA-YWSQ 99 (121)
T ss_dssp CCHHHHHHHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHH-HHcc
Confidence 23333466666544 4664
No 19
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=28.03 E-value=29 Score=25.09 Aligned_cols=34 Identities=24% Similarity=0.599 Sum_probs=24.0
Q ss_pred cccccCCCchhHHHHHHHHHHHHHhhCCCCccchHHHHHHH
Q 036050 162 QLFQRLWSEDDEIVVLKGMTDYSTKKGLDPNQDMQGFYDYI 202 (393)
Q Consensus 162 ~~fqR~WS~eDEI~IL~gli~~~~~~G~~P~~D~~af~d~i 202 (393)
+.+...||.+++..||+++..| |. .+|...-.+|
T Consensus 6 p~~~~~WT~eED~~L~~~v~~~----G~---~~W~~IA~~~ 39 (58)
T 2elk_A 6 SGFDENWGADEELLLIDACETL----GL---GNWADIADYV 39 (58)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHT----TT---TCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHH----Cc---CCHHHHHHHH
Confidence 4567789999999999998666 42 3565554444
No 20
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=27.87 E-value=36 Score=26.42 Aligned_cols=46 Identities=15% Similarity=0.324 Sum_probs=31.0
Q ss_pred cccCCCchhHHHHHHHHHHHHHhhCCCCccchHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhh
Q 036050 164 FQRLWSEDDEIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSLHVDVSKAQLVDKIRRLKKKFENN 229 (393)
Q Consensus 164 fqR~WS~eDEI~IL~gli~~~~~~G~~P~~D~~af~d~ik~sl~~~~s~~QL~~KiRrLKkKY~~~ 229 (393)
....||.+++..||+++..| | .+|.....+|.. =|..|+ |.+|.+.
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~----G----~~W~~IA~~v~~-----RT~~qc-------r~r~~~~ 62 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMY----K----DDWNKVSEHVGS-----RTQDEC-------ILHFLRL 62 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHS----S----SCHHHHHHHHSS-----CCHHHH-------HHHHTTS
T ss_pred cCCCcCHHHHHHHHHHHHHh----C----CCHHHHHHHcCC-----CCHHHH-------HHHHHHh
Confidence 45679999999999998766 4 467666555542 355555 4456555
No 21
>1sb0_B Protein C-MYB; CREB-binding protein, transcriptional activation, constitutive activation, LXXLL motif, KIX; NMR {Mus musculus} PDB: 2agh_A
Probab=27.82 E-value=34 Score=21.46 Aligned_cols=16 Identities=44% Similarity=0.648 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 036050 364 KELQVAQLELFLQRNE 379 (393)
Q Consensus 364 KKqr~~ElEl~LrR~d 379 (393)
|.+|++|+++.|.-.+
T Consensus 1 kEkriKElELLLMS~E 16 (26)
T 1sb0_B 1 KEKRIKELELLLMSTE 16 (26)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhhH
Confidence 4689999999887543
No 22
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=32.93 E-value=13 Score=28.77 Aligned_cols=55 Identities=27% Similarity=0.546 Sum_probs=36.9
Q ss_pred ccccCCCchhHHHHHHHHHHHHHhhCCCCccchHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHh
Q 036050 163 LFQRLWSEDDEIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSLHVDVSKAQLVDKIRRLKKKFEN 228 (393)
Q Consensus 163 ~fqR~WS~eDEI~IL~gli~~~~~~G~~P~~D~~af~d~ik~sl~~~~s~~QL~~KiRrLKkKY~~ 228 (393)
-.-=+||.+|.-.||+. | ++.|..|.. |.+|-..| +=|.+||.+..+.|-+=|..
T Consensus 12 e~vvlWTReeDR~IL~~---c-q~~G~s~~t-----fa~iA~~L--nks~~QV~~RF~~Lm~Lf~k 66 (70)
T 2lr8_A 12 EIIILWTRNDDRVILLE---C-QKRGPSSKT-----FAYLAAKL--DKNPNQVSERFQQLMKLFEK 66 (70)
Confidence 35668999999999875 3 567865531 33344444 56788888887777666653
No 23
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=26.56 E-value=1e+02 Score=25.26 Aligned_cols=73 Identities=18% Similarity=0.411 Sum_probs=45.9
Q ss_pred ccCCCchhHHHHHHHHHHHHHhhCCCCccchHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCC
Q 036050 165 QRLWSEDDEIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSLHVDVSKAQLVDKIRRLKKKFENNLGKGKKKGEDRTFSK 244 (393)
Q Consensus 165 qR~WS~eDEI~IL~gli~~~~~~G~~P~~D~~af~d~ik~sl~~~~s~~QL~~KiRrLKkKY~~~~~K~~k~G~~p~f~~ 244 (393)
...||.+++..|++++..| |. .++.....+|. .-+..| .+.||.+.+....+.| .++.
T Consensus 27 k~~Wt~eED~~L~~~v~~~----g~---~~W~~Ia~~l~-----~Rt~~q-------cr~Rw~~~l~p~~~~~---~WT~ 84 (128)
T 1h8a_C 27 KGPWTKEEDQRVIEHVQKY----GP---KRWSDIAKHLK-----GRIGKQ-------CRERWHNHLNPEVKKT---SWTE 84 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHT----CS---CCHHHHHHHSS-----SCCHHH-------HHHHHHHTTCSSSCCS---CCCH
T ss_pred CCCCCHHHHHHHHHHHHHH----CC---CCHHHHHHHhc-----CCcHHH-------HHHHHHHhcccccccc---cCCH
Confidence 4579999999888887655 42 24554444432 234444 4567777664432444 5788
Q ss_pred hhHHHHHHHHhhhcCC
Q 036050 245 PHEQKAYDLSKKFWGG 260 (393)
Q Consensus 245 ~HD~~~feLSk~IWG~ 260 (393)
.-|..|.++-+. .|.
T Consensus 85 eEd~~L~~~~~~-~G~ 99 (128)
T 1h8a_C 85 EEDRIIYQAHKR-LGN 99 (128)
T ss_dssp HHHHHHHHHHHH-HCS
T ss_pred HHHHHHHHHHHH-HCc
Confidence 888888888764 353
No 24
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=26.17 E-value=72 Score=25.20 Aligned_cols=71 Identities=18% Similarity=0.382 Sum_probs=44.6
Q ss_pred ccCCCchhHHHHHHHHHHHHHhhCCCCccchHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCC
Q 036050 165 QRLWSEDDEIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSLHVDVSKAQLVDKIRRLKKKFENNLGKGKKKGEDRTFSK 244 (393)
Q Consensus 165 qR~WS~eDEI~IL~gli~~~~~~G~~P~~D~~af~d~ik~sl~~~~s~~QL~~KiRrLKkKY~~~~~K~~k~G~~p~f~~ 244 (393)
...||.++.-.|++++-.| |. .++.....+|. .-+..|+ +.||.+.+....+.| .++.
T Consensus 4 k~~WT~eED~~L~~~v~~~----g~---~~W~~Ia~~l~-----~Rt~~qc-------r~Rw~~~l~p~~~~~---~Wt~ 61 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKY----GP---KRWSVIAKHLK-----GRIGKQC-------RERWHNHLNPEVKKT---SWTE 61 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHH----CT---TCHHHHHTTST-----TCCHHHH-------HHHHHHTTCCCCCCC---CCCH
T ss_pred CCCCCHHHHHHHHHHHHHh----CC---CcHHHHhhhhc-----CCCHHHH-------HHHHHhccCCccccc---CCCH
Confidence 4679999998888887666 42 24543333221 3355554 457777664432444 5788
Q ss_pred hhHHHHHHHHhhh
Q 036050 245 PHEQKAYDLSKKF 257 (393)
Q Consensus 245 ~HD~~~feLSk~I 257 (393)
.-|..|+++-...
T Consensus 62 eEd~~L~~~~~~~ 74 (105)
T 1gv2_A 62 EEDRIIYQAHKRL 74 (105)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888888886643
No 25
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=25.36 E-value=36 Score=24.62 Aligned_cols=51 Identities=16% Similarity=0.335 Sum_probs=33.3
Q ss_pred cccccCCCchhHHHHHHHHHHHHHhhCCCCccchHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhhhc
Q 036050 162 QLFQRLWSEDDEIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSLHVDVSKAQLVDKIRRLKKKFENNLG 231 (393)
Q Consensus 162 ~~fqR~WS~eDEI~IL~gli~~~~~~G~~P~~D~~af~d~ik~sl~~~~s~~QL~~KiRrLKkKY~~~~~ 231 (393)
......||.+++..||+++..| |. .+|.....+|.+ -|.. ..|.||.+...
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~----G~---~~W~~Ia~~~~~-----Rt~~-------qcr~r~~~~l~ 55 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDC----GF---GNWQDVANQMCT-----KTKE-------ECEKHYMKYFS 55 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHT----CT---TCHHHHHHHHTT-----SCHH-------HHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHH----Cc---CcHHHHHHHhCC-----CCHH-------HHHHHHHHHcc
Confidence 3566789999999999998666 42 356655555532 2333 45677777763
No 26
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=23.42 E-value=61 Score=20.19 Aligned_cols=15 Identities=33% Similarity=0.767 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHH
Q 036050 213 AQLVDKIRRLKKKFE 227 (393)
Q Consensus 213 ~QL~~KiRrLKkKY~ 227 (393)
..|.+.+|.||+|.+
T Consensus 11 edlqerlrklrkklr 25 (27)
T 3twe_A 11 EDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 457788888888765
No 27
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=22.45 E-value=1.6e+02 Score=24.20 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=34.6
Q ss_pred cccccCCCchhHHHHHHHHHHHHHhhCCCCccchHHHHHHHHhhcc---cCCCHHHHHHHHHHHHHHH
Q 036050 162 QLFQRLWSEDDEIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSLH---VDVSKAQLVDKIRRLKKKF 226 (393)
Q Consensus 162 ~~fqR~WS~eDEI~IL~gli~~~~~~G~~P~~D~~af~d~ik~sl~---~~~s~~QL~~KiRrLKkKY 226 (393)
+.-.+-||.+.+-.|++|+-.| |.- .|.. |...+. ..=|..||.+|-|.|.++-
T Consensus 10 rr~r~~WT~EEd~~L~~gV~k~----G~g---~W~~----I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 10 RRIRRPFSVAEVEALVQAVEKL----GTG---RWRD----VKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHH----CSS---SHHH----HHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHh----CCC---ChHH----HHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 3356789999999998888766 531 2332 222221 3457788888888876643
No 28
>2kmu_A ATP-dependent DNA helicase Q4; recql4, DNA-replication, homeodomain-like, ATP-BIN cataract, craniosynostosis, disease mutation, dwarfism; NMR {Homo sapiens}
Probab=21.29 E-value=68 Score=23.66 Aligned_cols=33 Identities=24% Similarity=0.476 Sum_probs=22.3
Q ss_pred HHHHhhCCCCcc-chHHHHHHHHhhcccCCC-HHHHHHHHHHHHHH
Q 036050 182 DYSTKKGLDPNQ-DMQGFYDYIKNSLHVDVS-KAQLVDKIRRLKKK 225 (393)
Q Consensus 182 ~~~~~~G~~P~~-D~~af~d~ik~sl~~~~s-~~QL~~KiRrLKkK 225 (393)
+|.++||+.|.. |+- .+.. ..++|.-.++||+.
T Consensus 19 ~F~~~~GRkP~k~DIk-----------~~p~~I~~~YK~Y~~Lk~~ 53 (56)
T 2kmu_A 19 AFRRQRGRRPSQDDVE-----------AAPEETRALYREYRTLKRT 53 (56)
T ss_dssp HHHHHTCSCCCHHHHT-----------TSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHH-----------cCHHHHHHHHHHHHHHHhc
Confidence 688999999985 432 2333 56677777777753
No 29
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=21.21 E-value=23 Score=22.29 Aligned_cols=12 Identities=58% Similarity=0.631 Sum_probs=6.8
Q ss_pred HHHHHHHHHHhh
Q 036050 218 KIRRLKKKFENN 229 (393)
Q Consensus 218 KiRrLKkKY~~~ 229 (393)
||||||.|-...
T Consensus 1 kirrlkqknarl 12 (28)
T 3ra3_B 1 KIRRLKQKNARL 12 (28)
T ss_dssp --CHHHHHHHHH
T ss_pred ChhHHHHhhhHH
Confidence 678888775543
No 30
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=20.26 E-value=72 Score=24.80 Aligned_cols=44 Identities=14% Similarity=0.213 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhhCCCCccchHHHHHHHHhhcccCCCHHHHHHHHHHHHHH
Q 036050 173 EIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSLHVDVSKAQLVDKIRRLKKK 225 (393)
Q Consensus 173 EI~IL~gli~~~~~~G~~P~~D~~af~d~ik~sl~~~~s~~QL~~KiRrLKkK 225 (393)
.-.+|+.+|+|...+-..+..|+++ .|.+....++++|+.|-.-
T Consensus 5 ~~~ll~~Fi~yIk~~Kvv~LedLA~---------~F~l~t~~~i~RI~~Le~~ 48 (72)
T 1wi9_A 5 SSGFLTEFINYIKKSKVVLLEDLAF---------QMGLRTQDAINRIQDLLTE 48 (72)
T ss_dssp SCCHHHHHHHHHHHCSEECHHHHHH---------HHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCeeeHHHHHH---------HhCCChHHHHHHHHHHHHC
Confidence 3357899999999888877777663 2688899999999998543
No 31
>2oku_A Acyl-COA dehydrogenase family protein; the acyl-COA dehydrogenase, PSI-2, structural genomics, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.48.5.1
Probab=20.18 E-value=53 Score=28.31 Aligned_cols=60 Identities=8% Similarity=0.181 Sum_probs=44.9
Q ss_pred HHHHHHh-hcccCCCHHH--HHHHHHHHHHHHHhhhcccccCCCCCCCCChhHHHHHHHHhhhc
Q 036050 198 FYDYIKN-SLHVDVSKAQ--LVDKIRRLKKKFENNLGKGKKKGEDRTFSKPHEQKAYDLSKKFW 258 (393)
Q Consensus 198 f~d~ik~-sl~~~~s~~Q--L~~KiRrLKkKY~~~~~K~~k~G~~p~f~~~HD~~~feLSk~IW 258 (393)
++..|+. .+..+++..- |...|..|..+|...+.+. +..++..+..-|=++||+..-.|-
T Consensus 14 yl~~irE~y~~~~~~~el~~l~~rl~k~~~~~ee~v~~v-ke~~nqe~~Df~ARrLvemaa~ii 76 (131)
T 2oku_A 14 YIARIREEYQQTEVKPELQPMKEALARMTDRAEALIAFV-TEQKDQELLDFQARRLVEMTAHAV 76 (131)
T ss_dssp HHHHHHHTGGGCCCCGGGHHHHHHHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHHHHHHHH
Confidence 3567888 8877776665 8899999999999999876 555555555566677887776664
Done!