Query 036050
Match_columns 393
No_of_seqs 146 out of 173
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 15:00:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036050.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036050hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jhfa1 a.4.5.2 (A:2-72) LexA 71.0 4.7 0.00034 28.9 6.1 46 173-225 7-52 (71)
2 d2iw5b1 a.4.1.3 (B:376-440) RE 62.2 3.5 0.00025 28.9 3.7 47 167-226 7-53 (65)
3 d2cjja1 a.4.1.3 (A:8-70) Radia 59.1 9.9 0.00072 26.3 5.7 55 166-229 2-56 (63)
4 d1w0ta_ a.4.1.4 (A:) DNA-bindi 58.1 6.6 0.00048 26.4 4.4 48 166-224 3-51 (52)
5 d1w0ua_ a.4.1.4 (A:) Telomeric 45.4 8.7 0.00064 26.0 3.4 48 166-224 3-51 (55)
6 d2cqqa1 a.4.1.3 (A:8-66) DnaJ 45.3 15 0.0011 25.6 4.8 50 166-225 2-51 (59)
7 d2cqra1 a.4.1.3 (A:7-66) DnaJ 39.3 36 0.0026 22.9 6.0 50 164-222 11-60 (60)
8 d2cu7a1 a.4.1.3 (A:8-72) MYSM1 37.1 37 0.0027 23.0 5.8 46 166-224 3-48 (65)
9 d1ug2a_ a.4.1.3 (A:) 2610100b2 37.0 58 0.0042 24.6 7.4 58 163-230 31-88 (95)
10 d1mc0a2 d.110.2.1 (A:402-555) 34.8 9.9 0.00072 28.4 2.5 21 164-185 117-137 (154)
11 d1f44a1 a.60.9.1 (A:20-129) Cr 34.2 49 0.0035 24.5 6.7 54 176-229 29-83 (110)
12 d1p2fa1 a.4.6.1 (A:121-217) Re 27.9 49 0.0036 23.7 5.5 57 166-230 23-79 (97)
13 d2ckxa1 a.4.1.3 (A:578-660) Te 25.1 59 0.0043 23.3 5.4 50 166-223 1-50 (83)
14 d1x41a1 a.4.1.1 (A:8-54) Trans 24.7 15 0.0011 23.9 1.7 30 168-204 4-33 (47)
15 d1or4a_ a.1.1.2 (A:) Heme-base 23.8 23 0.0016 28.5 3.0 56 170-232 35-93 (169)
16 d1stza1 a.4.5.51 (A:14-100) He 22.7 79 0.0057 23.1 5.8 47 173-225 6-52 (87)
17 d2okua1 a.48.5.1 (A:443-564) U 21.5 28 0.002 27.6 2.9 61 196-257 12-75 (122)
18 d2cfxa1 a.4.5.32 (A:1-63) Tran 20.8 50 0.0036 22.4 3.9 39 173-224 7-45 (63)
No 1
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=71.01 E-value=4.7 Score=28.88 Aligned_cols=46 Identities=20% Similarity=0.313 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhhCCCCccchHHHHHHHHhhcccCCCHHHHHHHHHHHHHH
Q 036050 173 EIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSLHVDVSKAQLVDKIRRLKKK 225 (393)
Q Consensus 173 EI~IL~gli~~~~~~G~~P~~D~~af~d~ik~sl~~~~s~~QL~~KiRrLKkK 225 (393)
+-.||+.|..|..++|..|.. .-|...+.+. |.+-+..-|.+|.+|
T Consensus 7 Q~~vL~~I~~~~~~~G~~Ps~------rei~~~~g~~-S~stv~~~l~~Le~k 52 (71)
T d1jhfa1 7 QQEVFDLIRDHISQTGMPPTR------AEIAQRLGFR-SPNAAEEHLKALARK 52 (71)
T ss_dssp HHHHHHHHHHHHHHHSSCCCH------HHHHHHTTCS-SHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCCH------HHHHHHcCCC-CHHHHHHHHHHHHHC
Confidence 467999999999999999984 2233333332 888999999999876
No 2
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}
Probab=62.22 E-value=3.5 Score=28.87 Aligned_cols=47 Identities=21% Similarity=0.568 Sum_probs=32.5
Q ss_pred CCCchhHHHHHHHHHHHHHhhCCCCccchHHHHHHHHhhcccCCCHHHHHHHHHHHHHHH
Q 036050 167 LWSEDDEIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSLHVDVSKAQLVDKIRRLKKKF 226 (393)
Q Consensus 167 ~WS~eDEI~IL~gli~~~~~~G~~P~~D~~af~d~ik~sl~~~~s~~QL~~KiRrLKkKY 226 (393)
-||+++...|++++..| | .|+.....+|. .=|..|+......+++++
T Consensus 7 ~WT~eE~~~f~~~~~~~----G----~~w~~Ia~~~~-----~kt~~q~~~~y~~~~k~~ 53 (65)
T d2iw5b1 7 RWTTEEQLLAVQAIRKY----G----RDFQAISDVIG-----NKSVVQVKNFFVNYRRRF 53 (65)
T ss_dssp SCCHHHHHHHHHHHHHH----S----SCHHHHHHHHS-----SCCHHHHHHHHHHTTTTT
T ss_pred CCCHHHHHHHHHHHHHh----C----chHHHHHHHcC-----CCCHHHHHHHHHHHHhhc
Confidence 49999999999998777 4 25555555443 347778777776666554
No 3
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}
Probab=59.08 E-value=9.9 Score=26.32 Aligned_cols=55 Identities=11% Similarity=0.278 Sum_probs=35.9
Q ss_pred cCCCchhHHHHHHHHHHHHHhhCCCCccchHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhh
Q 036050 166 RLWSEDDEIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSLHVDVSKAQLVDKIRRLKKKFENN 229 (393)
Q Consensus 166 R~WS~eDEI~IL~gli~~~~~~G~~P~~D~~af~d~ik~sl~~~~s~~QL~~KiRrLKkKY~~~ 229 (393)
+-||.++...|++++..|-. | .| . ....|-..|. .=|..|+......|......+
T Consensus 2 ~~WT~eEd~~L~~~v~~~~~--~-~~-~----~W~~Ia~~l~-gRt~~qc~~r~~~L~~dik~i 56 (63)
T d2cjja1 2 RPWSAKENKAFERALAVYDK--D-TP-D----RWANVARAVE-GRTPEEVKKHYEILVEDIKYI 56 (63)
T ss_dssp CSCCHHHHHHHHHHHHHSCT--T-CT-T----HHHHHHHHST-TCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHCC--C-Cc-h----HHHHHHHHcC-CCCHHHHHHHHHHHHHHhhcc
Confidence 56999999999999987732 1 11 1 2333444433 348889888887777665543
No 4
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.05 E-value=6.6 Score=26.42 Aligned_cols=48 Identities=19% Similarity=0.332 Sum_probs=32.8
Q ss_pred cCCCchhHHHHHHHHHHHHHhhCCCCccchHHHHHHHHhhcc-cCCCHHHHHHHHHHHHH
Q 036050 166 RLWSEDDEIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSLH-VDVSKAQLVDKIRRLKK 224 (393)
Q Consensus 166 R~WS~eDEI~IL~gli~~~~~~G~~P~~D~~af~d~ik~sl~-~~~s~~QL~~KiRrLKk 224 (393)
+.||++++-.|++++..| |. .++..+ ...+. .+-|..|+.++-+.|++
T Consensus 3 ~~WT~eED~~L~~~v~~~----G~---~~W~~I----~~~~~~~~Rt~~q~r~Rw~nl~K 51 (52)
T d1w0ta_ 3 QAWLWEEDKNLRSGVRKY----GE---GNWSKI----LLHYKFNNRTSVMLKDRWRTMKK 51 (52)
T ss_dssp CCCCHHHHHHHHHHHHHH----CT---TCHHHH----HHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHH----CC---CCHHHH----HhhcCCCCCCHHHHHHHHHHHHC
Confidence 569999999999888766 52 144433 22222 35688899998888864
No 5
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.39 E-value=8.7 Score=26.01 Aligned_cols=48 Identities=19% Similarity=0.430 Sum_probs=30.9
Q ss_pred cCCCchhHHHHHHHHHHHHHhhCCCCccchHHHHHHHHhhcc-cCCCHHHHHHHHHHHHH
Q 036050 166 RLWSEDDEIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSLH-VDVSKAQLVDKIRRLKK 224 (393)
Q Consensus 166 R~WS~eDEI~IL~gli~~~~~~G~~P~~D~~af~d~ik~sl~-~~~s~~QL~~KiRrLKk 224 (393)
+.||.+++-.||+++-.| |.. +|... ...+. ..-|..|+.++-|.|.+
T Consensus 3 ~~WT~eEd~~L~~~V~~~----G~~---~W~~I----~~~~~~~~Rt~~q~k~Rwrn~~k 51 (55)
T d1w0ua_ 3 QKWTVEESEWVKAGVQKY----GEG---NWAAI----SKNYPFVNRTAVMIKDRWRTMKR 51 (55)
T ss_dssp CCCCHHHHHHHHHHHHHH----CTT---CHHHH----HHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh----CCC---hHHHH----HhhcCCCCcCHHHHHHHHHHHhc
Confidence 469999999999988655 521 34432 22211 24678888887777654
No 6
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.34 E-value=15 Score=25.59 Aligned_cols=50 Identities=26% Similarity=0.508 Sum_probs=33.8
Q ss_pred cCCCchhHHHHHHHHHHHHHhhCCCCccchHHHHHHHHhhcccCCCHHHHHHHHHHHHHH
Q 036050 166 RLWSEDDEIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSLHVDVSKAQLVDKIRRLKKK 225 (393)
Q Consensus 166 R~WS~eDEI~IL~gli~~~~~~G~~P~~D~~af~d~ik~sl~~~~s~~QL~~KiRrLKkK 225 (393)
.-||.+|-..|-++|+-|-. |. | .-.+.|-..| .=+..|++.+++.|+.-
T Consensus 2 ~eWT~ee~~~le~Al~~~P~--gt-~-----~RW~~IA~~v--gkt~~ev~~~~k~l~e~ 51 (59)
T d2cqqa1 2 PEWTEEDLSQLTRSMVKFPG--GT-P-----GRWEKIAHEL--GRSVTDVTTKAKQLKDS 51 (59)
T ss_dssp CCCCHHHHHHHHHHHHHSCT--TC-T-----THHHHHHHHH--TSCHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHCCC--CC-c-----HHHHHHHHHH--CCCHHHHHHHHHHHHHh
Confidence 35999999999999998832 32 2 2233444444 24788999888888743
No 7
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.35 E-value=36 Score=22.88 Aligned_cols=50 Identities=16% Similarity=0.385 Sum_probs=32.4
Q ss_pred cccCCCchhHHHHHHHHHHHHHhhCCCCccchHHHHHHHHhhcccCCCHHHHHHHHHHH
Q 036050 164 FQRLWSEDDEIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSLHVDVSKAQLVDKIRRL 222 (393)
Q Consensus 164 fqR~WS~eDEI~IL~gli~~~~~~G~~P~~D~~af~d~ik~sl~~~~s~~QL~~KiRrL 222 (393)
..+.||.++...|++++..|-. | .......|-..|. .=|..|+....+.|
T Consensus 11 ~~~~WT~eEd~~L~~~v~~~~~--~------~~~~W~~IA~~l~-~Rt~~qc~~R~~~L 60 (60)
T d2cqra1 11 AEEPWTQNQQKLLELALQQYPR--G------SSDCWDKIARCVP-SKSKEDCIARYKLL 60 (60)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCS--S------SHHHHHHHGGGCS-SSCHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHcCC--c------cchHHHHHHHHcC-CCCHHHHHHHHHHC
Confidence 4467999999999999988732 1 1123445555443 45777777766654
No 8
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.09 E-value=37 Score=23.00 Aligned_cols=46 Identities=15% Similarity=0.297 Sum_probs=29.5
Q ss_pred cCCCchhHHHHHHHHHHHHHhhCCCCccchHHHHHHHHhhcccCCCHHHHHHHHHHHHH
Q 036050 166 RLWSEDDEIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSLHVDVSKAQLVDKIRRLKK 224 (393)
Q Consensus 166 R~WS~eDEI~IL~gli~~~~~~G~~P~~D~~af~d~ik~sl~~~~s~~QL~~KiRrLKk 224 (393)
--||.+++..||+++..| | .++...-.+|. .-|..|+..-..++.+
T Consensus 3 ~~WT~eEd~~l~~~~~~~----G----~~W~~Ia~~~~-----~Rt~~q~k~ry~~~~~ 48 (65)
T d2cu7a1 3 VKWTIEEKELFEQGLAKF----G----RRWTKISKLIG-----SRTVLQVKSYARQYFK 48 (65)
T ss_dssp CCCCHHHHHHHHHHHHHT----C----SCHHHHHHHHS-----SSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh----c----chHHHHHHHcC-----CCCHHHHHHHHHHHHH
Confidence 359999999999998666 5 25554433332 3477777665554433
No 9
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}
Probab=37.05 E-value=58 Score=24.64 Aligned_cols=58 Identities=17% Similarity=0.338 Sum_probs=40.6
Q ss_pred ccccCCCchhHHHHHHHHHHHHHhhCCCCccchHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhhh
Q 036050 163 LFQRLWSEDDEIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSLHVDVSKAQLVDKIRRLKKKFENNL 230 (393)
Q Consensus 163 ~fqR~WS~eDEI~IL~gli~~~~~~G~~P~~D~~af~d~ik~sl~~~~s~~QL~~KiRrLKkKY~~~~ 230 (393)
....+||.++.-.||+.+ +++|..+ .-|+.+-.+|.+ =+-+||.+....|-+.|....
T Consensus 31 ~~~~~WTrEEDriIL~~~----q~~G~~~-~tw~~Ia~~L~~-----Rs~~qvr~Rf~~Lm~lf~~~~ 88 (95)
T d1ug2a_ 31 EKVVLWTREADRVILTMC----QEQGAQP-HTFSVISQQLGN-----KTPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp CCCSSSCHHHHHHHHHHH----HHTTSCT-TTHHHHHHHHSS-----CCHHHHHHHHHHHHHHHHHCS
T ss_pred CccCCcCHHHHHHHHHHH----HHcCCcH-HHHHHHHHHcCC-----CCHHHHHHHHHHHHHHHHHhh
Confidence 457789999999998765 5566222 124444344433 478999999999999998775
No 10
>d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.79 E-value=9.9 Score=28.40 Aligned_cols=21 Identities=14% Similarity=0.053 Sum_probs=16.5
Q ss_pred cccCCCchhHHHHHHHHHHHHH
Q 036050 164 FQRLWSEDDEIVVLKGMTDYST 185 (393)
Q Consensus 164 fqR~WS~eDEI~IL~gli~~~~ 185 (393)
..+.|+++| |.||+.|+.+.+
T Consensus 117 ~~~~f~~~d-~~ll~~la~q~a 137 (154)
T d1mc0a2 117 NGPWFSKFD-EDLATAFSIYCG 137 (154)
T ss_dssp TSSSCCHHH-HHHHHHHHHHHH
T ss_pred ccccccHHH-HHHHHHHHHHHH
Confidence 356788765 999999999965
No 11
>d1f44a1 a.60.9.1 (A:20-129) Cre recombinase {Bacteriophage P1 [TaxId: 10678]}
Probab=34.18 E-value=49 Score=24.54 Aligned_cols=54 Identities=7% Similarity=0.084 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhCCCCcc-chHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhh
Q 036050 176 VLKGMTDYSTKKGLDPNQ-DMQGFYDYIKNSLHVDVSKAQLVDKIRRLKKKFENN 229 (393)
Q Consensus 176 IL~gli~~~~~~G~~P~~-D~~af~d~ik~sl~~~~s~~QL~~KiRrLKkKY~~~ 229 (393)
-|..+++|...+|..|.. +...+..||.......++.+=|..+|-.||.-|...
T Consensus 29 dl~~f~~w~~~~~~~~l~~~~~~v~~yl~~l~~~g~s~sTi~R~lsair~f~r~~ 83 (110)
T d1f44a1 29 VCRSWAAWCKLNNRKWFPAEPEDVRDYLLYLQARGLAVKTIQQHLGQLNMLHRRS 83 (110)
T ss_dssp HHHHHHHHHHHTTCCTTTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhcccccchhhhHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHc
Confidence 467788888899987753 444444445444346788888999999999877654
No 12
>d1p2fa1 a.4.6.1 (A:121-217) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}
Probab=27.87 E-value=49 Score=23.73 Aligned_cols=57 Identities=18% Similarity=0.205 Sum_probs=39.8
Q ss_pred cCCCchhHHHHHHHHHHHHHhhCCCCccchHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhhh
Q 036050 166 RLWSEDDEIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSLHVDVSKAQLVDKIRRLKKKFENNL 230 (393)
Q Consensus 166 R~WS~eDEI~IL~gli~~~~~~G~~P~~D~~af~d~ik~sl~~~~s~~QL~~KiRrLKkKY~~~~ 230 (393)
.+-=..-|..||+.|+.+ .|..- .-..+++.|-+ .+++.+-|.--|.|||+|+....
T Consensus 23 ~i~Lt~~E~~lL~~L~~~---~g~vv--sr~~l~~~vw~---~~~~~~~l~~~I~rLR~kl~~~~ 79 (97)
T d1p2fa1 23 RIHLPKKEFEILLFLAEN---AGKVV--TREKLLETFWE---DPVSPRVVDTVIKRIRKAIEDDP 79 (97)
T ss_dssp ECCCCHHHHHHHHHHHHT---TTSCE--EHHHHHHHHCS---SCCCTHHHHHHHHHHHHHHCSST
T ss_pred EEEcCHHHHHHHHHHhhh---hhhhh--hhhhhheeeee---cccCCcccccHHHHHHHHHhhCC
Confidence 344466799999999976 23221 33455666654 34677889999999999998653
No 13
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=25.14 E-value=59 Score=23.31 Aligned_cols=50 Identities=14% Similarity=0.082 Sum_probs=31.0
Q ss_pred cCCCchhHHHHHHHHHHHHHhhCCCCccchHHHHHHHHhhcccCCCHHHHHHHHHHHH
Q 036050 166 RLWSEDDEIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSLHVDVSKAQLVDKIRRLK 223 (393)
Q Consensus 166 R~WS~eDEI~IL~gli~~~~~~G~~P~~D~~af~d~ik~sl~~~~s~~QL~~KiRrLK 223 (393)
|-||.+++-.|+.|+--| |.. .+..+...+- ....+-|..|+.++-|.|-
T Consensus 1 r~WT~eEd~~L~~~V~~~----G~~---~W~~I~~~~~-~~~~~Rt~~qck~RWrn~l 50 (83)
T d2ckxa1 1 RPFSVAEVEALVEAVEHL----GTG---RWRDVKMRAF-DNADHRTYVDLKDKWKTLV 50 (83)
T ss_dssp CCCCHHHHHHHHHHHHHH----CSS---CHHHHHHHHC-TTCTTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH----Ccc---cHHHHHHHHH-hhccCCCHHHHHHHHHHHh
Confidence 679999999998887655 532 3432211110 1123468889988888854
No 14
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.70 E-value=15 Score=23.93 Aligned_cols=30 Identities=20% Similarity=0.539 Sum_probs=21.1
Q ss_pred CCchhHHHHHHHHHHHHHhhCCCCccchHHHHHHHHh
Q 036050 168 WSEDDEIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKN 204 (393)
Q Consensus 168 WS~eDEI~IL~gli~~~~~~G~~P~~D~~af~d~ik~ 204 (393)
||.+++..||+++..| |. .++...-.+|.+
T Consensus 4 Wt~eEd~~L~~~v~~~----G~---~nW~~Ia~~~~~ 33 (47)
T d1x41a1 4 WTAQEEMALLEAVMDC----GF---GNWQDVANQMCT 33 (47)
T ss_dssp SCHHHHHHHHHHHHHT----CT---TCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHH----CC---ccHHHHHHHcCC
Confidence 9999999999998654 52 256555555543
No 15
>d1or4a_ a.1.1.2 (A:) Heme-based aerotactic transducer HemAT, sensor domain {Bacillus subtilis [TaxId: 1423]}
Probab=23.75 E-value=23 Score=28.47 Aligned_cols=56 Identities=18% Similarity=0.357 Sum_probs=34.0
Q ss_pred chhHHHHHHHHHHHHHhhCCCCccc-hHHHHHHHHhhcccCCCHHHHHH--HHHHHHHHHHhhhcc
Q 036050 170 EDDEIVVLKGMTDYSTKKGLDPNQD-MQGFYDYIKNSLHVDVSKAQLVD--KIRRLKKKFENNLGK 232 (393)
Q Consensus 170 ~eDEI~IL~gli~~~~~~G~~P~~D-~~af~d~ik~sl~~~~s~~QL~~--KiRrLKkKY~~~~~K 232 (393)
.++++.+|+.+......++ .. +..||+.|... .-.+.-|.+ .+.+||......+..
T Consensus 35 t~~d~~~L~~~~p~i~~~~----~~i~d~FY~~l~~~---Pe~~~~f~~~~~~erlk~~~~~~~~~ 93 (169)
T d1or4a_ 35 GDAELYVLEQLQPLIQENI----VNIVDAFYKNLDHE---SSLMDIINDHSSVDRLKQTLKRHIQE 93 (169)
T ss_dssp CHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHTTS---HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcC---HHHHHHHcCccchHHHHHHHHHHHHH
Confidence 5677999999999988776 23 37799987542 222222211 355666555555544
No 16
>d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=22.73 E-value=79 Score=23.07 Aligned_cols=47 Identities=11% Similarity=0.126 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhhCCCCccchHHHHHHHHhhcccCCCHHHHHHHHHHHHHH
Q 036050 173 EIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSLHVDVSKAQLVDKIRRLKKK 225 (393)
Q Consensus 173 EI~IL~gli~~~~~~G~~P~~D~~af~d~ik~sl~~~~s~~QL~~KiRrLKkK 225 (393)
...||..|+++-.++|..|.. ..|...+.+.+|..=+..=|..|.++
T Consensus 6 q~~IL~~Ive~y~~~g~Pv~s------~~i~~~~~l~~S~aTIRn~m~~LE~~ 52 (87)
T d1stza1 6 QRKVLYCIVREYIENKKPVSS------QRVLEVSNIEFSSATIRNDMKKLEYL 52 (87)
T ss_dssp HHHHHHHHHHHHHHHCSCBCH------HHHHHHSCCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCccCH------HHHHHHhCCCCCHHHHHHHHHHHHHC
Confidence 457999999999999977763 44556667888999999999999765
No 17
>d2okua1 a.48.5.1 (A:443-564) Uncharacterized protein PG0775 {Porphyromonas gingivalis [TaxId: 837]}
Probab=21.51 E-value=28 Score=27.61 Aligned_cols=61 Identities=8% Similarity=0.188 Sum_probs=45.7
Q ss_pred HHHHHHHH-hhcccCCCH--HHHHHHHHHHHHHHHhhhcccccCCCCCCCCChhHHHHHHHHhhh
Q 036050 196 QGFYDYIK-NSLHVDVSK--AQLVDKIRRLKKKFENNLGKGKKKGEDRTFSKPHEQKAYDLSKKF 257 (393)
Q Consensus 196 ~af~d~ik-~sl~~~~s~--~QL~~KiRrLKkKY~~~~~K~~k~G~~p~f~~~HD~~~feLSk~I 257 (393)
+.++..|| ..-..+|+. .-|.++|..|..||...+.+. +.-++...-.-|=|+|++.+-.|
T Consensus 12 gty~~~ir~Eye~~~~~pEl~~lk~rl~~m~~r~ea~v~~V-~E~kdqel~Df~ARRLvEma~h~ 75 (122)
T d2okua1 12 GTYIARIREEYQQTEVKPELQPMKEALARMTDRAEALIAFV-TEQKDQELLDFQARRLVEMTAHA 75 (122)
T ss_dssp THHHHHHHHTGGGCCCCGGGHHHHHHHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHH
Confidence 45778887 566677764 589999999999999998776 55555555556778888877655
No 18
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=20.76 E-value=50 Score=22.39 Aligned_cols=39 Identities=10% Similarity=0.340 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhhCCCCccchHHHHHHHHhhcccCCCHHHHHHHHHHHHH
Q 036050 173 EIVVLKGMTDYSTKKGLDPNQDMQGFYDYIKNSLHVDVSKAQLVDKIRRLKK 224 (393)
Q Consensus 173 EI~IL~gli~~~~~~G~~P~~D~~af~d~ik~sl~~~~s~~QL~~KiRrLKk 224 (393)
...||..| ..+|..|..+++.. .+++...+...|++|+.
T Consensus 7 D~~IL~~L----~~n~r~s~~~iA~~---------lgis~~tv~~Ri~~L~~ 45 (63)
T d2cfxa1 7 DLNIIEEL----KKDSRLSMRELGRK---------IKLSPPSVTERVRQLES 45 (63)
T ss_dssp HHHHHHHH----HHCSCCCHHHHHHH---------HTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHcCCCCHHHHHHH---------HCcCHHHHHHHHHHHHH
Confidence 34555554 45688887666644 47899999999999975
Done!