BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036052
(115 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JYA|A Chain A, Nmr Solution Structure Of Protein Atu1810 From
Agrobacterium Tumefaciens. Northeast Structural Genomics
Consortium Target Atr23, Ontario Centre For Structural
Proteomics Target Atc1776
Length = 106
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 16 IYTPARTATQQGSGKIGRWKINFMSKQ-KWENPLMGWTSTGDPYANVGDAGLSFDSEEAA 74
IY PA+TA Q G+ K W + F ++ + +P+MG+TS+ D V L+F+++E A
Sbjct: 8 IYRPAKTAMQSGTAKTNVWVLEFDAEVPRKIDPIMGYTSSSDMKQQVK---LTFETQEQA 64
Query: 75 REFAERHGWEYVVRKPHRPLLNVKSYAEHFKW 106
+A+R G EY V P V SY ++F++
Sbjct: 65 EAYAQRKGIEYRVILPKEATRKVVSYTDNFRF 96
>pdb|2LJU|A Chain A, Solution Structure Of Putative Oxidoreductase From
Ehrlichia Chaffeensis, Seattle Structural Genomics
Center For Infectious Disease (Ssgcid)
Length = 108
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 13 RVVIYTPARTATQQGSGKIGRWKINFM-SKQKWENPLMGWTSTGDPYANVGDAGLSFDSE 71
R IY PA++ Q G K+ WK+ F S ++ PLM WT + D V LSF +
Sbjct: 13 RARIYKPAKSTMQSGHSKLKAWKLEFEPSCTQYTEPLMNWTGSHDTKQQV---CLSFTTR 69
Query: 72 EAAREFAERHGWEYVVRKPHRPLLNVKSYAEHF 104
E A +A H +Y V + + + KSYA++F
Sbjct: 70 ELAIAYAVAHKIDYTVLQDNPRTIVPKSYADNF 102
>pdb|4A8J|B Chain B, Crystal Structure Of The Elongator Subcomplex Elp456
pdb|4A8J|E Chain E, Crystal Structure Of The Elongator Subcomplex Elp456
Length = 270
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 9 HLRRRVVIYTPARTATQQGSGKIGRWKINFMSKQ 42
HL ++++ Y PA TATQ + +N++S +
Sbjct: 82 HLVKQIISYLPAATATQAKKHXVIIDSLNYISTE 115
>pdb|4EJS|B Chain B, Structure Of Yeast Elongator Subcomplex Elp456
Length = 242
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 9 HLRRRVVIYTPARTATQQGSGKIGRWKINFMSKQ 42
HL ++++ Y PA TATQ + +N++S +
Sbjct: 86 HLVKQIISYLPAATATQAKKHMVIIDSLNYISTE 119
>pdb|1VCL|A Chain A, Crystal Structure Of Hemolytic Lectin Cel-iii
pdb|1VCL|B Chain B, Crystal Structure Of Hemolytic Lectin Cel-iii
pdb|2Z48|A Chain A, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Galnac
pdb|2Z48|B Chain B, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Galnac
pdb|2Z49|A Chain A, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Methyl-Alpha-D-Galactopylanoside
pdb|2Z49|B Chain B, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Methyl-Alpha-D-Galactopylanoside
Length = 432
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 7/37 (18%)
Query: 26 QGSGKIGRWKINFMSKQK-------WENPLMGWTSTG 55
QG+G +G W+ + + Q+ WE P W G
Sbjct: 261 QGTGDVGTWQCDGLPDQRFKWVFDDWEVPTATWNMVG 297
>pdb|3MVE|A Chain A, Crystal Structure Of A Novel Pyruvate Decarboxylase
pdb|3MVE|B Chain B, Crystal Structure Of A Novel Pyruvate Decarboxylase
Length = 415
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 28 SGKIGRWKIN---FMSKQKWENPLMGWTSTGDPYANVGD 63
SG++ W + F+S +K + P++ + GDP + D
Sbjct: 335 SGQMAAWSLKVQGFLSSRKTKVPILAMSLEGDPVSPYSD 373
>pdb|3OUR|A Chain A, Crystal Structure Of Complex Between Eiia And A Novel
Pyruvate Decarboxylase
pdb|3OUR|C Chain C, Crystal Structure Of Complex Between Eiia And A Novel
Pyruvate Decarboxylase
pdb|3OUR|E Chain E, Crystal Structure Of Complex Between Eiia And A Novel
Pyruvate Decarboxylase
pdb|3OUR|G Chain G, Crystal Structure Of Complex Between Eiia And A Novel
Pyruvate Decarboxylase
Length = 435
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 28 SGKIGRWKIN---FMSKQKWENPLMGWTSTGDPYANVGD 63
SG++ W + F+S +K + P++ + GDP + D
Sbjct: 355 SGQMAAWSLKVQGFLSSRKTKVPILAMSLEGDPVSPYSD 393
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,162,873
Number of Sequences: 62578
Number of extensions: 163751
Number of successful extensions: 343
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 337
Number of HSP's gapped (non-prelim): 10
length of query: 115
length of database: 14,973,337
effective HSP length: 78
effective length of query: 37
effective length of database: 10,092,253
effective search space: 373413361
effective search space used: 373413361
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)