BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036052
(115 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FJW4|NDUS4_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Arabidopsis thaliana GN=FRO1 PE=2 SV=1
Length = 154
Score = 189 bits (481), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 84/110 (76%), Positives = 100/110 (90%)
Query: 2 VSGIPEEHLRRRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYANV 61
VSGIPEEHL R+V+IY+PARTATQ GSGK+G+WKINF+S KWENPLMGWTSTGDPYANV
Sbjct: 42 VSGIPEEHLSRKVIIYSPARTATQSGSGKLGKWKINFVSTLKWENPLMGWTSTGDPYANV 101
Query: 62 GDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKWKGPPK 111
GD+ L+FDSEEAA+ FAERHGW+Y V+KP+ PLL VKSY+++FKWKG P+
Sbjct: 102 GDSALAFDSEEAAKSFAERHGWDYKVKKPNTPLLKVKSYSDNFKWKGNPQ 151
>sp|Q5XIF3|NDUS4_RAT NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Rattus norvegicus GN=Ndufs4 PE=1 SV=1
Length = 175
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 67/106 (63%), Gaps = 4/106 (3%)
Query: 2 VSGIPEEHLR-RRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
++G+PEEH++ R+V I+ PAR Q G +WK+ F ++++WENPLMGW ST DP +N
Sbjct: 64 LTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSN 123
Query: 61 VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKW 106
+ L+F ++E A FAE+HGW Y V P KSY +F W
Sbjct: 124 M---VLTFSAKEDAVAFAEKHGWSYDVEGRKVPKPKSKSYGANFSW 166
>sp|O43181|NDUS4_HUMAN NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Homo sapiens GN=NDUFS4 PE=1 SV=1
Length = 175
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 68/106 (64%), Gaps = 4/106 (3%)
Query: 2 VSGIPEEHLR-RRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
++G+PEEH++ R+V I+ PAR Q G +WK+ F ++++WENPLMGW ST DP +N
Sbjct: 64 LTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSN 123
Query: 61 VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKW 106
+ L+F ++E A FAE++GW Y + + P KSY +F W
Sbjct: 124 M---VLTFSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSW 166
>sp|Q0MQH0|NDUS4_GORGO NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS4 PE=2
SV=1
Length = 175
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 68/106 (64%), Gaps = 4/106 (3%)
Query: 2 VSGIPEEHLR-RRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
++G+PEEH++ R+V I+ PAR Q G +WK+ F ++++WENPLMGW ST DP +N
Sbjct: 64 LTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSN 123
Query: 61 VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKW 106
+ L+F ++E A FAE++GW Y + + P KSY +F W
Sbjct: 124 M---VLTFSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSW 166
>sp|Q66XS7|NDUS4_GECJA NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Gecko japonicus GN=NDUFS4 PE=2 SV=1
Length = 175
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 69/106 (65%), Gaps = 4/106 (3%)
Query: 2 VSGIPEEHLR-RRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
++G+PEEH++ R+V I+ PAR Q G +WK+ F ++++WENPLMGW+ST DP +N
Sbjct: 64 LTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWSSTADPLSN 123
Query: 61 VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKW 106
+ L+F ++E A FAE++GW + V + P KSY +F W
Sbjct: 124 L---VLTFSTKEDAVAFAEKNGWSFDVEERKVPKPKSKSYGANFSW 166
>sp|P0CB96|NDUS4_PONPY NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Pongo pygmaeus GN=NDUFS4 PE=2 SV=1
Length = 175
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 68/106 (64%), Gaps = 4/106 (3%)
Query: 2 VSGIPEEHLR-RRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
++G+PEEH++ R+V I+ PAR Q G +WK+ F ++++WENPLMGW ST DP +N
Sbjct: 64 LTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSN 123
Query: 61 VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKW 106
+ L+F ++E A FAE++GW Y V + P KSY +F W
Sbjct: 124 M---VLTFRTKEDAVSFAEKNGWSYDVEERKVPKPKSKSYGANFSW 166
>sp|P0CB95|NDUS4_PONAB NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Pongo abelii GN=NDUFS4 PE=2 SV=1
Length = 175
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 68/106 (64%), Gaps = 4/106 (3%)
Query: 2 VSGIPEEHLR-RRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
++G+PEEH++ R+V I+ PAR Q G +WK+ F ++++WENPLMGW ST DP +N
Sbjct: 64 LTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSN 123
Query: 61 VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKW 106
+ L+F ++E A FAE++GW Y V + P KSY +F W
Sbjct: 124 M---VLTFRTKEDAVSFAEKNGWSYDVEERKVPKPKSKSYGANFSW 166
>sp|Q02375|NDUS4_BOVIN NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Bos taurus GN=NDUFS4 PE=1 SV=1
Length = 175
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 67/106 (63%), Gaps = 4/106 (3%)
Query: 2 VSGIPEEHLR-RRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
++G+PEEH++ R+ I+ PAR Q G +WK+ F ++++WENPLMGW ST DP +N
Sbjct: 64 ITGVPEEHIKTRKARIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSN 123
Query: 61 VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKW 106
+ L+F ++E A FAE++GW Y V + P KSY +F W
Sbjct: 124 L---VLTFSTKEDAVAFAEKNGWSYDVEERKVPKPKSKSYGANFSW 166
>sp|Q0MQH1|NDUS4_PANTR NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Pan troglodytes GN=NDUFS4 PE=2 SV=1
Length = 175
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 4/106 (3%)
Query: 2 VSGIPEEHLR-RRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
++G+PEEH++ R+V I+ PAR Q G +WK+ F ++++WENPLMGW ST DP +N
Sbjct: 64 LTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSN 123
Query: 61 VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKW 106
+ L+ ++E A FAE++GW Y + + P KSY +F W
Sbjct: 124 M---VLTXSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSW 166
>sp|Q9CXZ1|NDUS4_MOUSE NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Mus musculus GN=Ndufs4 PE=1 SV=3
Length = 175
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 68/106 (64%), Gaps = 4/106 (3%)
Query: 2 VSGIPEEHLR-RRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYAN 60
++G+PEEH++ R+V I+ PAR Q G +WK+ F ++++WENPLMGW ST DP +N
Sbjct: 64 LTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSN 123
Query: 61 VGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKW 106
+ L+F ++E A FAE++GW Y V + P KSY +F W
Sbjct: 124 M---VLTFSAKEDAIAFAEKNGWSYDVEEKKVPKPKSKSYGANFSW 166
>sp|P25711|NDUS4_NEUCR NADH-ubiquinone oxidoreductase 21 kDa subunit, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=nuo-21 PE=1 SV=2
Length = 218
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 67/109 (61%), Gaps = 7/109 (6%)
Query: 1 MVSGIPEEHLRRRVVIYTPARTATQQGSGKIGRWKINFMSKQK---WENPLMGWTSTGDP 57
+VSG P E R V IY P++ ATQ + ++ W++++ +K WEN LMGW S+GD
Sbjct: 103 VVSGAPMELQARTVRIYLPSKPATQSSNSRV-LWRMDWDVLEKGHRWENELMGWQSSGD- 160
Query: 58 YANVGDAGLSFDSEEAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKW 106
V L+F ++E A +FAE+ G+EY V++P++ K+YA +F +
Sbjct: 161 --FVQGTHLTFRTKEEAIQFAEKQGYEYFVQEPNQRHFTPKAYANNFLY 207
>sp|Q8T1V6|NDUS4_DICDI NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Dictyostelium discoideum GN=ndufs4 PE=3
SV=2
Length = 190
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 12 RRVVIYTPARTATQQGSGKIGRWKINFMSKQKWENPLMGWTSTGDPYANVGDAGLSFDSE 71
+ V IY P+R Q G+ + +W I KW + LMGW ++ D + L F+SE
Sbjct: 84 KSVNIYRPSRNTMQTGTLRTKKWVIELPFNPKWNDRLMGWWASKDT---LNQLNLRFNSE 140
Query: 72 EAAREFAERHGWEYVVRKPHRPLLNVKSYAEHFKWKG 108
A + + G Y + + L K Y F+++G
Sbjct: 141 TDAVAYCKEIGLNYNIVEEDVTLRKKKKYGHRFRYRG 177
>sp|P80268|NUO2_SOLTU NADH-ubiquinone oxidoreductase 18 kDa subunit (Fragment)
OS=Solanum tuberosum PE=1 SV=2
Length = 30
Score = 32.7 bits (73), Expect = 0.71, Method: Composition-based stats.
Identities = 14/16 (87%), Positives = 15/16 (93%)
Query: 1 MVSGIPEEHLRRRVVI 16
MVSGIP+EHLRR VVI
Sbjct: 15 MVSGIPDEHLRRFVVI 30
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,520,404
Number of Sequences: 539616
Number of extensions: 1953582
Number of successful extensions: 3786
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3749
Number of HSP's gapped (non-prelim): 18
length of query: 115
length of database: 191,569,459
effective HSP length: 83
effective length of query: 32
effective length of database: 146,781,331
effective search space: 4697002592
effective search space used: 4697002592
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)