BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036053
(184 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QZ1|A Chain A, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|B Chain B, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|C Chain C, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|D Chain D, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
Length = 496
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 83 TDTTSRTVEWAVAEFLHNPKVLTTAQNELRELLGNDGKVDRAMGSD 128
T+TT+ T+ WAVA LH+P++ Q EL LG R D
Sbjct: 292 TETTASTLSWAVAFLLHHPEIQRRLQEELDRELGPGASCSRVTYKD 337
>pdb|2F9Q|A Chain A, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|B Chain B, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|C Chain C, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|D Chain D, Crystal Structure Of Human Cytochrome P450 2d6
Length = 479
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 128 DSNIWQNPISFVHESFLDSEID-VKGRDFQLIPLGAGRRIYPGLPLAHRMAHLMLT 182
D +W+ P F E FLD++ VK F +P AGRR G PLA L T
Sbjct: 383 DEAVWEKPFRFHPEHFLDAQGHFVKPEAF--LPFSAGRRACLGEPLARMELFLFFT 436
>pdb|3QM4|A Chain A, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3QM4|B Chain B, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3TBG|A Chain A, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|B Chain B, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|C Chain C, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|D Chain D, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TDA|A Chain A, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|B Chain B, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|C Chain C, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|D Chain D, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
Length = 479
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 128 DSNIWQNPISFVHESFLDSEID-VKGRDFQLIPLGAGRRIYPGLPLAHRMAHLMLT 182
D +W+ P F E FLD++ VK F +P AGRR G PLA L T
Sbjct: 383 DEAVWEKPFRFHPEHFLDAQGHFVKPEAF--LPFSAGRRACLGEPLARMELFLFFT 436
>pdb|4GQS|A Chain A, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|B Chain B, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|C Chain C, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|D Chain D, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
Length = 477
Score = 30.0 bits (66), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 128 DSNIWQNPISFVHESFLDSEIDVKGRDFQLIPLGAGRRIYPGLPLAHRMAHLMLTF 183
D+ + NP F FLD + K ++ +P AG+RI G LA L LTF
Sbjct: 380 DNKEFPNPEMFDPRHFLDEGGNFKKSNY-FMPFSAGKRICVGEGLARMELFLFLTF 434
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 83 TDTTSRTVEWAVAEFLHNPKVLTTAQNELRELLG 116
+TT+ V+W +A LHNP+V E+ + +G
Sbjct: 286 VETTTSVVKWTLAFLLHNPQVKKKLYEEIDQNVG 319
>pdb|1XS8|A Chain A, Solution Structure Of Yggx Protein Of Salmonella Enterica
Length = 91
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 149 DVKGRDFQLIPLGAGRRIY 167
D +G+DFQL P G+RIY
Sbjct: 13 DAEGQDFQLYPGELGKRIY 31
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha-
Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
Length = 507
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 84 DTTSRTVEWAVAEFLHNPKVLTTAQNELRELLGNDGKVDRAMGSDSNIWQNPISFVHES 142
DT S ++W + F P V T Q EL +++G D MG N+ ++F++E+
Sbjct: 293 DTLSTALQWLLLLFTRYPDVQTRVQAELDQVVGRDRL--PCMGDQPNL-PYVLAFLYEA 348
>pdb|4FGP|A Chain A, Legionella Pneumophila Lapg (Egta-Treated)
pdb|4FGP|B Chain B, Legionella Pneumophila Lapg (Egta-Treated)
pdb|4FGQ|A Chain A, Legionella Pneumophila Lapg
pdb|4FGQ|B Chain B, Legionella Pneumophila Lapg
Length = 193
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 120 KVDRAMGSDSNIWQNPISFVHESFLDSEIDVKGRDFQLIPLGAGR---RIYPGLPLAHRM 176
+ D G+ + W++P+ F+ + D E + F L+ +G RI L
Sbjct: 60 ETDPITGASDDYWKSPVEFIVDGGGDCEDFAIIKYFTLVAVGVPSDQLRITYAASLTLNQ 119
Query: 177 AHLMLTF 183
AH++L+F
Sbjct: 120 AHMVLSF 126
>pdb|3IG8|A Chain A, Saccharomyces Cerevisiae Glutamate Cysteine Ligase In
Complex With Mg2+, L-Glutamate And Adp
pdb|3LVV|A Chain A, Bso-Inhibited Scgcl
pdb|3LVW|A Chain A, Glutathione-Inhibited Scgcl
Length = 692
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 63 DGIIDERLQVKESLMNSEVRTDTTSRTVEWAVAEFLHNPK 102
D I+ E+ K+S R DT T +++++E HNP+
Sbjct: 524 DAILFEKFHWKKSF-----RNDTDVETEDYSISEIFHNPE 558
>pdb|3IG5|A Chain A, Saccharomyces Cerevisiae Glutamate Cysteine Ligase In
Complex With Mg2+ And L-Glutamate
Length = 692
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 63 DGIIDERLQVKESLMNSEVRTDTTSRTVEWAVAEFLHNPK 102
D I+ E+ K+S R DT T +++++E HNP+
Sbjct: 524 DAILFEKFHWKKSF-----RNDTDVETEDYSISEIFHNPE 558
>pdb|3CZH|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
pdb|3CZH|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
Length = 481
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 128 DSNIWQNPISFVHESFLDSEIDVKGRDFQLIPLGAGRRIYPGLPLAHRMAHLMLT 182
D W++P F E FLDS ++ L+P GRR G LA L T
Sbjct: 384 DEKYWRDPEVFHPERFLDSSGYFAKKE-ALVPFSLGRRHCLGEHLARMEMFLFFT 437
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 83 TDTTSRTVEWAVAEFLHNPKVLTTAQNELRELLGNDGK 120
T+TT+ + WA+ P + Q E+ ++G +GK
Sbjct: 286 TETTTNVLRWAILFMALYPNIQGQVQKEIDLIMGPNGK 323
>pdb|3C6G|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3C6G|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3DL9|A Chain A, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
pdb|3DL9|B Chain B, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
Length = 479
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 128 DSNIWQNPISFVHESFLDSEIDVKGRDFQLIPLGAGRRIYPGLPLAHRMAHLMLT 182
D W++P F E FLDS ++ L+P GRR G LA L T
Sbjct: 384 DEKYWRDPEVFHPERFLDSSGYFAKKE-ALVPFSLGRRHCLGEHLARMEMFLFFT 437
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 83 TDTTSRTVEWAVAEFLHNPKVLTTAQNELRELLGNDGK 120
T+TT+ + WA+ P + Q E+ ++G +GK
Sbjct: 286 TETTTNVLRWAILFMALYPNIQGQVQKEIDLIMGPNGK 323
>pdb|1R9O|A Chain A, Crystal Structure Of P4502c9 With Flurbiprofen Bound
Length = 477
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 74 ESLMNSEVR-----TDTTSRTVEWAVAEFLHNPKVLTTAQNELRELLGND 118
ESL N+ V T+TTS T+ +A+ L +P+V Q E+ ++G +
Sbjct: 268 ESLENTAVDLFGAGTETTSTTLRYALLLLLKHPEVTAKVQEEIERVIGRN 317
>pdb|1OG2|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG2|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
Length = 475
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 74 ESLMNSEVR-----TDTTSRTVEWAVAEFLHNPKVLTTAQNELRELLGND 118
ESL N+ V T+TTS T+ +A+ L +P+V Q E+ ++G +
Sbjct: 266 ESLENTAVDLFGAGTETTSTTLRYALLLLLKHPEVTAKVQEEIERVIGRN 315
>pdb|4FGO|A Chain A, Legionella Pneumophila Lapg (Calcium-Bound)
Length = 193
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 120 KVDRAMGSDSNIWQNPISFVHESFLDSEIDVKGRDFQLIPLGAGR---RIYPGLPLAHRM 176
+ D G+ + W++P+ F+ + D E + F L+ +G RI L
Sbjct: 60 ETDPITGASDDYWKSPVEFIVDGGGDCEDFAIIKYFTLVAVGVPSDQLRITYAASLTLNQ 119
Query: 177 AHLMLTF 183
AH +L+F
Sbjct: 120 AHXVLSF 126
>pdb|3K9V|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9V|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9Y|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
pdb|3K9Y|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
Length = 482
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 123 RAMGSDSNIWQNPISFVHESFLDSEIDVKGRDFQLIPLGAGRRIYPGLPLAHRMAHLMLT 182
+ +GS + +++ F E +L E + F +P G G+R+ G LA HL L
Sbjct: 388 QVLGSSEDNFEDSHKFRPERWLQKEKKIN--PFAHLPFGIGKRMCIGRRLAELQLHLALC 445
Query: 183 F 183
+
Sbjct: 446 W 446
>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|B Chain B, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|C Chain C, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|D Chain D, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
Length = 491
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 84 DTTSRTVEWAVAEFLHNPKVLTTAQNELRELLG 116
DT + + W++ + NP+V Q EL ++G
Sbjct: 293 DTVTTAISWSLMYLVMNPRVQRKIQEELDTVIG 325
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,130,323
Number of Sequences: 62578
Number of extensions: 197921
Number of successful extensions: 435
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 416
Number of HSP's gapped (non-prelim): 28
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)