Query 036054
Match_columns 148
No_of_seqs 136 out of 590
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 08:57:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036054.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036054hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04706 PLA2_plant PLA2_plant: 100.0 1.8E-33 3.8E-38 212.6 6.0 109 36-144 4-116 (117)
2 KOG4087 Phospholipase A2 [Lipi 99.9 2.7E-28 5.7E-33 189.5 1.3 97 11-116 1-99 (144)
3 cd00125 PLA2c PLA2c: Phospholi 99.8 3.1E-22 6.7E-27 150.6 -0.7 78 31-116 1-78 (115)
4 smart00085 PA2c Phospholipase 99.8 4.4E-20 9.5E-25 138.7 0.6 75 31-114 1-77 (117)
5 cd04707 otoconin_90 otoconin_9 99.8 3.8E-20 8.1E-25 139.9 -0.7 66 42-114 7-74 (117)
6 PF00068 Phospholip_A2_1: Phos 99.6 1.7E-17 3.8E-22 123.9 -3.2 76 31-114 1-77 (116)
7 cd00618 PLA2_like PLA2_like: P 99.6 5.3E-16 1.1E-20 108.0 3.7 37 53-89 1-37 (83)
8 cd04704 PLA2_bee_venom_like PL 99.0 2.1E-10 4.5E-15 84.2 2.5 51 57-109 7-76 (97)
9 PF05826 Phospholip_A2_2: Phos 98.5 1.2E-08 2.7E-13 74.9 -0.2 51 57-109 6-75 (99)
10 cd04705 PLA2_group_III_like PL 97.6 3.4E-05 7.4E-10 57.3 1.7 38 72-109 31-83 (100)
11 PF08398 Parvo_coat_N: Parvovi 97.3 5.9E-05 1.3E-09 52.2 0.4 41 57-100 5-45 (64)
12 PF06951 PLA2G12: Group XII se 96.0 0.0041 9E-08 50.7 2.0 66 39-108 58-131 (184)
13 PF10690 Myticin-prepro: Mytic 83.7 0.26 5.6E-06 36.6 -0.6 41 11-51 1-42 (98)
14 PF03823 Neurokinin_B: Neuroki 62.3 8.2 0.00018 26.4 2.5 30 11-40 1-30 (59)
15 PF07172 GRP: Glycine rich pro 59.3 15 0.00032 26.9 3.6 16 11-26 3-18 (95)
16 PF09402 MSC: Man1-Src1p-C-ter 34.9 13 0.00028 31.5 0.0 50 79-132 55-104 (334)
17 PF07420 DUF1509: Protein of u 26.1 22 0.00048 31.7 -0.0 41 75-115 76-127 (377)
18 PF12662 cEGF: Complement Clr- 24.5 55 0.0012 18.3 1.4 23 54-76 1-23 (24)
19 PF12555 TPPK_C: Thiamine pyro 24.3 79 0.0017 20.5 2.4 26 3-28 7-32 (53)
20 PF08036 Antimicrobial_6: Diap 22.1 31 0.00068 21.7 0.1 12 73-84 15-26 (39)
21 PF08041 PetM: PetM family of 20.7 2E+02 0.0043 17.3 3.4 26 6-31 5-30 (31)
22 PF03503 Chlam_OMP3: Chlamydia 20.1 40 0.00087 22.5 0.3 24 74-98 5-28 (55)
No 1
>cd04706 PLA2_plant PLA2_plant: Plant-specific sub-family of Phospholipase A2, a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. Enzymatically active PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids; secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis cannot form bilayers leading to a change in membrane conformation and ultimately to a block in the release of neurotransmitters. PLA2 may form dimers or oligomers. This sub-family does not appear to have a conserved active site and metal-binding loop.
Probab=100.00 E-value=1.8e-33 Score=212.59 Aligned_cols=109 Identities=44% Similarity=0.909 Sum_probs=101.4
Q ss_pred hhhhhhhcccccCCcc-ccCCCcCCcCCCCCCCCCCCCCccchhhhhccchhhh--cCCCCCcchHHHHHHHHHHhhc-C
Q 036054 36 QVKCSRTCVAENCNSV-GIRYGKYCGVGWSGYPGEKPCDELDACCKIHDECVDK--KGLTNIKCHEKFKRCIKKVQKF-G 111 (148)
Q Consensus 36 ~i~~~rtC~~~~~~~~-y~~YGcyCG~G~~G~~g~~PvD~lD~CC~~HD~CY~~--~~~~~~~C~~~~~~c~~~~~~~-~ 111 (148)
..+++|||+..++... |..||||||+|++|.+|++|+|+||+||+.||+||++ .++.+++|+.+|.+|+.+++++ .
T Consensus 4 ~~~csrtc~~~~c~~~~y~~YG~yCG~g~~g~~~~~P~D~lD~CC~~HD~Cy~~~~~~~~~c~C~~~f~~Cl~~~~~~~~ 83 (117)
T cd04706 4 PEECSRTCESYFCSGPPFLRYGKYCGPGYSGCPGERPCDDLDACCMTHDACVQAKKNDYLSLECNEKFKNCVRRFRKARK 83 (117)
T ss_pred cccccccchhhhccCCcccccCcccCCCCCCCCCCCCcchhhHHHHhCcCcccCCCCCcCCchHHHHHHHHHHHhccccc
Confidence 3589999999999876 9999999999999988989999999999999999998 6689999999999999999988 6
Q ss_pred ccccCCCCCccchhhhHHhhHHHHHHHHhhCCC
Q 036054 112 NVGFSWKCPYDTVVPTMVQGMDMAILLSQLGNS 144 (148)
Q Consensus 112 ~~~F~~~C~~~~~~~~~~~~md~a~~~~~~~~~ 144 (148)
+++|+++|+++.++++|..+||+|++||+|+..
T Consensus 84 ~~~~~~~C~~~~v~~~i~~~~~~a~~~~~~~~~ 116 (117)
T cd04706 84 PTFEGNKCIVTFVIPVITVVMDAALIASKLGKR 116 (117)
T ss_pred ceeccccCccceeeeeeecchHHHHHHHHhccC
Confidence 777789999999999999999999999998764
No 2
>KOG4087 consensus Phospholipase A2 [Lipid transport and metabolism]
Probab=99.94 E-value=2.7e-28 Score=189.45 Aligned_cols=97 Identities=27% Similarity=0.474 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHhcccchhhh--hhhhhhhhcccccCCccccCCCcCCcCCCCCCCCCCCCCccchhhhhccchhhh
Q 036054 11 TCVIATLAFVFIIVFSKSASAIND--SQVKCSRTCVAENCNSVGIRYGKYCGVGWSGYPGEKPCDELDACCKIHDECVDK 88 (148)
Q Consensus 11 m~~~l~~a~~~~~~~~~~~g~~~~--~~i~~~rtC~~~~~~~~y~~YGcyCG~G~~G~~g~~PvD~lD~CC~~HD~CY~~ 88 (148)
|++++++|+++...+.+++|++|| +||+++ | ++.++++|+.||||||.||+|+ |+|+|||||+.||+||++
T Consensus 1 mk~~~~la~l~~~~~~~~~g~l~~l~~Mi~~v-t--~~~~~l~Y~~YGCyCGlGG~G~----P~D~iDwCC~~HDcCY~~ 73 (144)
T KOG4087|consen 1 MKLLLLLAFLLPAVLLTAHGALLNLKKMIECV-T--GKSAALSYNKYGCYCGLGGSGQ----PKDAIDWCCHAHDCCYDR 73 (144)
T ss_pred CchhHHHHHHHHHHHhhcchHHHHHHHHHHHH-c--CCCccceecCccccccCCCCCC----ccchHHHHHhcccHHHHH
Confidence 788999999999999999999999 567777 5 7777999999999999999998 999999999999999999
Q ss_pred cCCCCCcchHHHHHHHHHHhhcCccccC
Q 036054 89 KGLTNIKCHEKFKRCIKKVQKFGNVGFS 116 (148)
Q Consensus 89 ~~~~~~~C~~~~~~c~~~~~~~~~~~F~ 116 (148)
+ ++.+|++++.+|..+..++.+.|=.
T Consensus 74 l--e~~gC~py~~~Ys~sc~n~~I~Cs~ 99 (144)
T KOG4087|consen 74 L--EEKGCSPYTERYSWSCSNQSITCSD 99 (144)
T ss_pred H--HHcCCCccccceeeEeeCCeEEeCC
Confidence 9 6788999999888888777666653
No 3
>cd00125 PLA2c PLA2c: Phospholipase A2, a family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids (PC or phosphatidylethanolamine), usually in a metal-dependent reaction, to generate lysophospholipid (LysoPL) and a free fatty acid (FA). The resulting products are either dietary or used in synthetic pathways for leukotrienes and prostaglandins. Often, arachidonic acid is released as a free fatty acid and acts as second messenger in signaling networks. Secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis (LysoPL and FA) cannot form bilayers leading to a change in membrane conformation and ultimately to a block in
Probab=99.83 E-value=3.1e-22 Score=150.56 Aligned_cols=78 Identities=27% Similarity=0.466 Sum_probs=64.6
Q ss_pred hhhhhhhhhhhhcccccCCccccCCCcCCcCCCCCCCCCCCCCccchhhhhccchhhhcCCCCCcchHHHHHHHHHHhhc
Q 036054 31 AINDSQVKCSRTCVAENCNSVGIRYGKYCGVGWSGYPGEKPCDELDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQKF 110 (148)
Q Consensus 31 ~~~~~~i~~~rtC~~~~~~~~y~~YGcyCG~G~~G~~g~~PvD~lD~CC~~HD~CY~~~~~~~~~C~~~~~~c~~~~~~~ 110 (148)
+++|+. +++ .|++++++++|++||||||+|++|+ |+|+|||||+.||+||+++ ...+|++++..|.++..++
T Consensus 1 ~l~qf~-~MI-~c~tgr~~~~Y~~YGCyCG~GG~G~----PvD~~DrCC~~HD~CY~~~--~~~~C~p~~~~Y~y~~~~~ 72 (115)
T cd00125 1 NLLQFG-KMI-KCTTGRSALDYNGYGCYCGLGGSGT----PVDDTDRCCQVHDCCYDRA--EKGGCSPYFTSYSYTCSDG 72 (115)
T ss_pred CHHHHH-HHH-HHhcCCCHHHHhhcCCccCCCCCCC----CcccHHHHHHHHHhHHhcc--ccCCCccccccceEEEECC
Confidence 466754 333 5556677789999999999999998 9999999999999999998 3368999999998888777
Q ss_pred CccccC
Q 036054 111 GNVGFS 116 (148)
Q Consensus 111 ~~~~F~ 116 (148)
.++|-+
T Consensus 73 ~i~C~~ 78 (115)
T cd00125 73 QITCSD 78 (115)
T ss_pred cceECc
Confidence 777754
No 4
>smart00085 PA2c Phospholipase A2.
Probab=99.77 E-value=4.4e-20 Score=138.66 Aligned_cols=75 Identities=28% Similarity=0.434 Sum_probs=57.4
Q ss_pred hhhhh--hhhhhhhcccccCCccccCCCcCCcCCCCCCCCCCCCCccchhhhhccchhhhcCCCCCcchHHHHHHHHHHh
Q 036054 31 AINDS--QVKCSRTCVAENCNSVGIRYGKYCGVGWSGYPGEKPCDELDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQ 108 (148)
Q Consensus 31 ~~~~~--~i~~~rtC~~~~~~~~y~~YGcyCG~G~~G~~g~~PvD~lD~CC~~HD~CY~~~~~~~~~C~~~~~~c~~~~~ 108 (148)
+++|+ ||+++ + ++++.+.|+.||||||.|++|. |+|+|||||+.||+||+++. ..+|++++..|..+.+
T Consensus 1 ~l~qf~~mi~c~-t--~~~~~~~y~~YGCyCG~gg~G~----pvD~~D~CC~~HD~Cy~~~~--~~~C~~~~~~y~~~c~ 71 (117)
T smart00085 1 NLWQFGNMIQCA-T--GKRAWLSYGDYGCYCGWGGSGT----PVDATDRCCFVHDCCYGKAE--KEGCNPKTTTYSYSCD 71 (117)
T ss_pred CHHHHHHHHHHh-c--CCCcccchhccCcccCCCCCCC----ccccccchhhhcCchhhhcc--cCCCcccccceEEEEE
Confidence 46774 45554 3 4577789999999999999998 99999999999999999883 2577776666665555
Q ss_pred hcCccc
Q 036054 109 KFGNVG 114 (148)
Q Consensus 109 ~~~~~~ 114 (148)
+..+.|
T Consensus 72 ~~~~~C 77 (117)
T smart00085 72 NGFITC 77 (117)
T ss_pred CCcceE
Confidence 444444
No 5
>cd04707 otoconin_90 otoconin_90: Phospholipase A2-like domains present in otoconin-90 and otoconin-95, mammal proteins that are principal matrix proteins of calcitic otoconia. Interactions involving otoconin-90 may trigger or constitute key events in otoconia formation. The PLA2-like domains in otoconins may have lost their metal-binding sites.
Probab=99.76 E-value=3.8e-20 Score=139.89 Aligned_cols=66 Identities=29% Similarity=0.590 Sum_probs=49.5
Q ss_pred hcccccCCccccCCCcCCcCCCCCCCCCCCCCccchhhhhccchhhhcCCCCCcchH--HHHHHHHHHhhcCccc
Q 036054 42 TCVAENCNSVGIRYGKYCGVGWSGYPGEKPCDELDACCKIHDECVDKKGLTNIKCHE--KFKRCIKKVQKFGNVG 114 (148)
Q Consensus 42 tC~~~~~~~~y~~YGcyCG~G~~G~~g~~PvD~lD~CC~~HD~CY~~~~~~~~~C~~--~~~~c~~~~~~~~~~~ 114 (148)
.|++++++++|++||||||.|++|+ |+|+|||||+.||+||+++. ..+|.+ + ..|.++..+..++|
T Consensus 7 ~c~tgr~~~~Y~~YGCyCG~GG~G~----PvD~~DrCC~~HD~CY~~~~--~~~C~~~~~-~~Y~y~c~~~~i~C 74 (117)
T cd04707 7 KCLTGRCPREFEDYGCYCGQEGEGL----PVDELDRCCFQHRCCLEQAS--EMGCLQDRK-LSTEVTCVDHKPKC 74 (117)
T ss_pred hhhcCCCHHHHcccCCcccCCCCCC----CcccchhHHHHhHHHHhhhh--hcCCCCCCC-cceEEEEECCcccc
Confidence 4445677789999999999999998 99999999999999999883 346743 2 34444444444444
No 6
>PF00068 Phospholip_A2_1: Phospholipase A2; InterPro: IPR001211 Phospholipase A2 (3.1.1.4 from EC) (PLA2) is a small lipolytic enzyme that releases fatty acids from the second carbon group of glycerol. It is involved in a number of physiologically important cellular processes, such as the liberation of arachidonic acid from membrane phospholipids []. It plays a pivotal role in the biosynthesis of prostaglandin and other mediators of inflammation. PLA2 has four to seven disulphide bonds and binds a calcium ion that is essential for activity. Within the active enzyme, the alpha amino group is involved in a conserved hydrogen-bonding network linking the N-terminal region to the active site. The side chains of two conserved residues, His and Asp, participate in the catalytic network. Many PLA2's are widely distributed in snakes, lizards, bees and mammals. In mammals there are at least four forms: pancreatic, membrane-associated as well as two less well characterised forms. The venom of most snakes contains multiple forms of PLA2. Some of them are presynaptic neurotoxins which inhibit neuromuscular transmission by blocking acetylcholine release from the nerve termini. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 1.; GO: 0004623 phospholipase A2 activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1OQS_F 1S6B_B 1XXW_B 1MH2_B 2RD4_B 1OZ6_A 2OSN_A 2PH4_B 1FDK_A 2BP2_A ....
Probab=99.61 E-value=1.7e-17 Score=123.94 Aligned_cols=76 Identities=26% Similarity=0.456 Sum_probs=54.4
Q ss_pred hhhhhhhhhhhhcc-cccCCccccCCCcCCcCCCCCCCCCCCCCccchhhhhccchhhhcCCCCCcchHHHHHHHHHHhh
Q 036054 31 AINDSQVKCSRTCV-AENCNSVGIRYGKYCGVGWSGYPGEKPCDELDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQK 109 (148)
Q Consensus 31 ~~~~~~i~~~rtC~-~~~~~~~y~~YGcyCG~G~~G~~g~~PvD~lD~CC~~HD~CY~~~~~~~~~C~~~~~~c~~~~~~ 109 (148)
+++|+. +++ .|+ +......|..||||||.|+.|. |+|+||+||+.||.||+.+. ..+|++.+..|.+....
T Consensus 1 ~l~q~~-~Mi-~~~~~~~~~~~y~~YGCyCg~~g~G~----PvD~iD~~C~~h~~Cy~~~~--~~~C~~~~~~Y~~~~~~ 72 (116)
T PF00068_consen 1 NLWQFG-EMI-KCVTGKFPFFKYNDYGCYCGFGGKGQ----PVDEIDRCCRKHDQCYKCAK--EKGCDPYFTSYSYSCSN 72 (116)
T ss_dssp -HHHHH-HHH-HHHHSSSHHHHHSSBTTTBSSSSSSS-----SSHHHHHHHHHHHHHHHHT--TTTSSTTTSS-EEEEET
T ss_pred CHHHHH-HHH-HHhhCCCcHHHHccccccCCCCCCCC----CcccccchhHHhHHHHHHHh--cccccccccceEEEEec
Confidence 356644 333 344 4455678999999999999997 99999999999999999983 47787777766665544
Q ss_pred cCccc
Q 036054 110 FGNVG 114 (148)
Q Consensus 110 ~~~~~ 114 (148)
..++|
T Consensus 73 ~~i~C 77 (116)
T PF00068_consen 73 KNITC 77 (116)
T ss_dssp TEEEE
T ss_pred CCccc
Confidence 43444
No 7
>cd00618 PLA2_like PLA2_like: Phospholipase A2, a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids (PC or phosphatidylethanolamine), usually in a metal-dependent reaction, to generate lysophospholipid (LysoPL) and a free fatty acid (FA). The resulting products are either dietary or used in synthetic pathways for leukotrienes and prostaglandins. Often, arachidonic acid is released as a free fatty acid and acts as second messenger in signaling networks. Secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis (LysoPL and FA) cannot form bilayers leading to a change in membrane conformation and ultimately
Probab=99.60 E-value=5.3e-16 Score=107.96 Aligned_cols=37 Identities=49% Similarity=1.040 Sum_probs=33.7
Q ss_pred cCCCcCCcCCCCCCCCCCCCCccchhhhhccchhhhc
Q 036054 53 IRYGKYCGVGWSGYPGEKPCDELDACCKIHDECVDKK 89 (148)
Q Consensus 53 ~~YGcyCG~G~~G~~g~~PvD~lD~CC~~HD~CY~~~ 89 (148)
+.||||||+|+++.+++.|+|+||+||+.||+||+.+
T Consensus 1 ~~ygc~CG~g~~~~~~g~p~D~~D~CC~~HD~Cy~~~ 37 (83)
T cd00618 1 LPYGCYCGPGGSACPSGQPVDETDRCCRKHDCCYDQI 37 (83)
T ss_pred CCcCcccCCCCcCCCCCCCCCcchhhhhhCccHhhhh
Confidence 4699999999996666679999999999999999987
No 8
>cd04704 PLA2_bee_venom_like PLA2_bee_venom_like: A sub-family of Phospholipase A2, similar to bee venom PLA2. PLA2 is a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. Enzymatically active PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids; secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis cannot form bilayers leading to a change in membrane conformation and ultimately to a block in the release of neurotransmitters. PLA2 may form dimers or oligomers. Bee venom PLA2 has fewer conserved disulfide bridges than most canonical PLA2s.
Probab=98.99 E-value=2.1e-10 Score=84.22 Aligned_cols=51 Identities=35% Similarity=0.834 Sum_probs=42.4
Q ss_pred cCCcCCCCCC----CCCCCCCccchhhhhccchhhhcC---------------CCCCcchHHHHHHHHHHhh
Q 036054 57 KYCGVGWSGY----PGEKPCDELDACCKIHDECVDKKG---------------LTNIKCHEKFKRCIKKVQK 109 (148)
Q Consensus 57 cyCG~G~~G~----~g~~PvD~lD~CC~~HD~CY~~~~---------------~~~~~C~~~~~~c~~~~~~ 109 (148)
+|||+|+.+. .| --..+|+||++||+|++.+. ..+++|+.+|.+|+..+.+
T Consensus 7 kWCG~Gn~a~~~~dlG--~~~~tD~CCr~HD~C~~~i~~~~~kyg~~N~~~~t~~~C~CD~~f~~CL~~~~~ 76 (97)
T cd04704 7 KWCGPGNIATNYSDLG--AFRETDKCCREHDHCPDIISAGEYKYGLTNTRLFTRSHCDCDNRFRQCLKNVND 76 (97)
T ss_pred eecCCCCCCCCccccc--CccccchHHHccccCcCcccccccccCccCCCccccccCcHHHHHHHHHHHcCC
Confidence 8999999985 22 23789999999999998652 4779999999999999855
No 9
>PF05826 Phospholip_A2_2: Phospholipase A2; InterPro: IPR001211 Phospholipase A2 (3.1.1.4 from EC) (PLA2) is a small lipolytic enzyme that releases fatty acids from the second carbon group of glycerol. It is involved in a number of physiologically important cellular processes, such as the liberation of arachidonic acid from membrane phospholipids []. It plays a pivotal role in the biosynthesis of prostaglandin and other mediators of inflammation. PLA2 has four to seven disulphide bonds and binds a calcium ion that is essential for activity. Within the active enzyme, the alpha amino group is involved in a conserved hydrogen-bonding network linking the N-terminal region to the active site. The side chains of two conserved residues, His and Asp, participate in the catalytic network. Many PLA2's are widely distributed in snakes, lizards, bees and mammals. In mammals there are at least four forms: pancreatic, membrane-associated as well as two less well characterised forms. The venom of most snakes contains multiple forms of PLA2. Some of them are presynaptic neurotoxins which inhibit neuromuscular transmission by blocking acetylcholine release from the nerve termini. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 1.; GO: 0004623 phospholipase A2 activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1POC_A.
Probab=98.55 E-value=1.2e-08 Score=74.89 Aligned_cols=51 Identities=37% Similarity=0.847 Sum_probs=37.2
Q ss_pred cCCcCCCCCC----CCCCCCCccchhhhhccchhhhcC---------------CCCCcchHHHHHHHHHHhh
Q 036054 57 KYCGVGWSGY----PGEKPCDELDACCKIHDECVDKKG---------------LTNIKCHEKFKRCIKKVQK 109 (148)
Q Consensus 57 cyCG~G~~G~----~g~~PvD~lD~CC~~HD~CY~~~~---------------~~~~~C~~~~~~c~~~~~~ 109 (148)
+|||+|.... +| -.-.+|+||+.||.|..... ..+++|+.+|.+|+..+..
T Consensus 6 ~WCG~gn~a~~~~dlG--~~~~tD~CCR~HD~C~~~I~~~~~k~gl~N~~~~T~~hC~Cd~~f~~CL~~~~~ 75 (99)
T PF05826_consen 6 KWCGPGNIAKNYSDLG--EFKETDRCCREHDHCPDKIPPGETKYGLHNPRPFTISHCDCDSRFYQCLKNVNT 75 (99)
T ss_dssp SSSBSS---SSTT-----SSHHHHHHHHHHHT-SSEE-TT-EETTEE--SSS-EEBHHHHHHHHHHHHTS-H
T ss_pred cccCCCCCccCccccc--ccHHHHHHHHhhccCCCccCCCccccccccCCcCceeecCcccHHHHHHHHcCC
Confidence 7999999864 44 35689999999999998763 4789999999999998643
No 10
>cd04705 PLA2_group_III_like PLA2_group_III_like: A sub-family of Phospholipase A2, similar to human group III PLA2. PLA2 is a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. Enzymatically active PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids; secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis cannot form bilayers leading to a change in membrane conformation and ultimately to a block in the release of neurotransmitters. PLA2 may form dimers or oligomers.
Probab=97.56 E-value=3.4e-05 Score=57.32 Aligned_cols=38 Identities=24% Similarity=0.635 Sum_probs=32.3
Q ss_pred CCccchhhhhccchhhhcC---------------CCCCcchHHHHHHHHHHhh
Q 036054 72 CDELDACCKIHDECVDKKG---------------LTNIKCHEKFKRCIKKVQK 109 (148)
Q Consensus 72 vD~lD~CC~~HD~CY~~~~---------------~~~~~C~~~~~~c~~~~~~ 109 (148)
--.+|+||+.||.|-.++. ..+|.|+.+|.+|+..+..
T Consensus 31 ~~~~DrCCR~HD~Cp~~I~~~~~k~gl~N~~~~tisHCdCD~rf~~CL~~~n~ 83 (100)
T cd04705 31 FKEPDRCCWKHKQCPGHIIPPFSSDGHHNFHLHSVSHCDCDSRLKDCLRLSSS 83 (100)
T ss_pred ccchhhhhhhhhcCccccCCcccccceecCCCcccccccHHHHHHHHHHHcCC
Confidence 4469999999999988752 4889999999999999754
No 11
>PF08398 Parvo_coat_N: Parvovirus coat protein VP1; InterPro: IPR013607 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This is the N-terminal region of the Parvovirus VP1 coat protein []; its function is not known. ; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=97.33 E-value=5.9e-05 Score=52.16 Aligned_cols=41 Identities=29% Similarity=0.389 Sum_probs=33.9
Q ss_pred cCCcCCCCCCCCCCCCCccchhhhhccchhhhcCCCCCcchHHH
Q 036054 57 KYCGVGWSGYPGEKPCDELDACCKIHDECVDKKGLTNIKCHEKF 100 (148)
Q Consensus 57 cyCG~G~~G~~g~~PvD~lD~CC~~HD~CY~~~~~~~~~C~~~~ 100 (148)
+|+|+|+.-..| .|++.+|+.++.||..|++. .+.+.++.+
T Consensus 5 ~YlGPgn~l~~g-~Pv~~~D~aA~~HD~aY~~~--lk~G~NPY~ 45 (64)
T PF08398_consen 5 KYLGPGNPLDNG-EPVNPVDAAAREHDEAYDEL--LKHGDNPYL 45 (64)
T ss_pred CccCCCCCcCCC-CCCCHHHHHHHHHHHHHHHH--HHcCCCCce
Confidence 799999997766 49999999999999999997 455666543
No 12
>PF06951 PLA2G12: Group XII secretory phospholipase A2 precursor (PLA2G12); InterPro: IPR010711 This family consists of several group XII secretory phospholipase A2 precursor (PLA2G12) (3.1.1.4 from EC) proteins. Group XII and group V PLA(2)s are thought to participate in helper T cell immune response through release of immediate second signals and generation of downstream eicosanoids [].; GO: 0004623 phospholipase A2 activity, 0005509 calcium ion binding, 0016042 lipid catabolic process, 0005576 extracellular region
Probab=95.96 E-value=0.0041 Score=50.70 Aligned_cols=66 Identities=29% Similarity=0.636 Sum_probs=46.8
Q ss_pred hhhhcccccCCccccCC----CcCCcCCCCCCCCCCCCC----ccchhhhhccchhhhcCCCCCcchHHHHHHHHHHh
Q 036054 39 CSRTCVAENCNSVGIRY----GKYCGVGWSGYPGEKPCD----ELDACCKIHDECVDKKGLTNIKCHEKFKRCIKKVQ 108 (148)
Q Consensus 39 ~~rtC~~~~~~~~y~~Y----GcyCG~G~~G~~g~~PvD----~lD~CC~~HD~CY~~~~~~~~~C~~~~~~c~~~~~ 108 (148)
|.-+|-.+..+..-..| =+=||.-.-|- ++| ..=.||-.||.||+.=+.....||.+|..|++++=
T Consensus 58 C~y~Cp~G~~p~pr~g~k~p~~NGCGS~~~G~----~~d~~iP~~t~CCn~HDiCYdTCg~~K~~CD~~F~~CL~~~C 131 (184)
T PF06951_consen 58 CQYRCPYGQKPVPRPGYKPPEPNGCGSYFLGL----QIDIGIPAMTKCCNQHDICYDTCGSSKEDCDSQFKSCLEKIC 131 (184)
T ss_pred ceeeCCCCCCCCCCCCCCCCCCCCCCCcccCC----cccCCCCchhccchhhhhHHHccCCCHHHHHHHHHHHHHHHH
Confidence 44466666665543332 26688743333 333 36789999999999987788999999999999983
No 13
>PF10690 Myticin-prepro: Myticin pre-proprotein from the mussel; InterPro: IPR019631 Myticin is a cysteine-rich peptide produced in three isoforms, A, B and C, by Mytilus galloprovincialis (Mediterranean mussel). Isoforms A and B show antibacterial activity against Gram-positive bacteria, while isoform B is additionally active against the fungus Fusarium oxysporum and a Gram-negative bacterium, Escherichia coli (streptomycin resistant strain D31) []. Myticin-prepro is the precursor peptide. The mature molecule, named myticin, consists of 40 residues, with four intramolecular disulphide bridges and a cysteine array in the primary structure different from that of previously characterised cysteine-rich antimicrobial peptides. The first 20 amino acids are a putative signal peptide, and the antimicrobial peptide sequence is a 36-residue C-terminal extension. Such a structure suggests that myticins are synthesised as prepro-proteins that are then processed by various proteolytic events before storage in the haemocytes as the active peptide. Myticin precursors are expressed mainly in the haemocytes. ; PDB: 2EEM_A.
Probab=83.70 E-value=0.26 Score=36.63 Aligned_cols=41 Identities=15% Similarity=0.283 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHhcccchhhh-hhhhhhhhcccccCCcc
Q 036054 11 TCVIATLAFVFIIVFSKSASAIND-SQVKCSRTCVAENCNSV 51 (148)
Q Consensus 11 m~~~l~~a~~~~~~~~~~~g~~~~-~~i~~~rtC~~~~~~~~ 51 (148)
||++.+||+.++++++.-+..... -.--|.+.|.+..|..+
T Consensus 1 MKatIlLAv~vAViv~v~ea~s~~CtS~yC~~fCgsa~C~~Y 42 (98)
T PF10690_consen 1 MKATILLAVVVAVIVGVQEAQSISCTSYYCKKFCGSARCSLY 42 (98)
T ss_dssp ------------------------HHHH-HHHHHHHTT-SEE
T ss_pred CccccccccccccccccccccccccchhHHHHhcCCCCCcEE
Confidence 789999999988877755544433 22247778888888543
No 14
>PF03823 Neurokinin_B: Neurokinin B; InterPro: IPR003635 Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. This family includes neurokinins, as well as many other peptides. Like other tachykinins, neurokinins are synthesized as larger protein precursors that are enzymatically converted to their mature forms.; GO: 0007217 tachykinin receptor signaling pathway
Probab=62.28 E-value=8.2 Score=26.37 Aligned_cols=30 Identities=10% Similarity=0.119 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhcccchhhhhhhhhh
Q 036054 11 TCVIATLAFVFIIVFSKSASAINDSQVKCS 40 (148)
Q Consensus 11 m~~~l~~a~~~~~~~~~~~g~~~~~~i~~~ 40 (148)
|+..++|+.|+++.++...|...+.+++..
T Consensus 1 MR~~lLf~aiLalsla~s~gavCeesQeQ~ 30 (59)
T PF03823_consen 1 MRSTLLFAAILALSLARSFGAVCEESQEQV 30 (59)
T ss_pred ChhHHHHHHHHHHHHHHHhhhhhhhhhhcc
Confidence 677889999999999999999987555554
No 15
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=59.33 E-value=15 Score=26.86 Aligned_cols=16 Identities=6% Similarity=0.162 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 036054 11 TCVIATLAFVFIIVFS 26 (148)
Q Consensus 11 m~~~l~~a~~~~~~~~ 26 (148)
.|++|+|++++|++|+
T Consensus 3 SK~~llL~l~LA~lLl 18 (95)
T PF07172_consen 3 SKAFLLLGLLLAALLL 18 (95)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4667777766554443
No 16
>PF09402 MSC: Man1-Src1p-C-terminal domain; InterPro: IPR018996 This entry represents the Inner nuclear membrane proteins MAN1 (also known as LEM domain-containing protein 3) and LEM domain-containing protein 2 (or LEM protein 2). Emerin and MAN1 are LEM domain-containing integral membrane proteins of the vertebrate nuclear envelope []. MAN1 is an integral protein of the inner nuclear membrane which binds to chromatin associated proteins and plays a role in nuclear organisation. The C-terminal nulceoplasmic region forms a DNA binding winged helix and binds to Smad []. LEM protein 2 is an essential protein involved in chromosome segregation and cell division, probably via its interaction with lmn-1, the main component of nuclear lamina. Has some overlapping function with emr-1.; GO: 0005639 integral to nuclear inner membrane; PDB: 2CH0_A.
Probab=34.87 E-value=13 Score=31.49 Aligned_cols=50 Identities=20% Similarity=0.354 Sum_probs=0.0
Q ss_pred hhhccchhhhcCCCCCcchHHHHHHHHHHhhcCccccCCCCCccchhhhHHhhH
Q 036054 79 CKIHDECVDKKGLTNIKCHEKFKRCIKKVQKFGNVGFSWKCPYDTVVPTMVQGM 132 (148)
Q Consensus 79 C~~HD~CY~~~~~~~~~C~~~~~~c~~~~~~~~~~~F~~~C~~~~~~~~~~~~m 132 (148)
|..|..||... ...|++.+......+...+..- +++|-.+....-.+.-|
T Consensus 55 CP~~a~C~~~~---~~~C~~~y~~~~~~l~~~g~~p-~~~Ci~D~~k~~~i~~l 104 (334)
T PF09402_consen 55 CPEHAICYPGL---KLECEPGYVLKPSPLSLFGLIP-PPKCIPDTEKEEKIEEL 104 (334)
T ss_dssp ------------------------------------------------------
T ss_pred ccccccccccc---cccccccccccccccccccccc-cccccccHHHHHHHHHH
Confidence 99999999884 4689888877765555555444 67777766544444333
No 17
>PF07420 DUF1509: Protein of unknown function (DUF1509); InterPro: IPR010883 This family consists of several uncharacterised viral proteins, which include LORF2 from the Marek's disease-like viruses (Meleagrid herpesvirus 1 (MeHV-1) and LORF3 from Gallid herpesvirus 2. Members of this family are typically around 400 residues in length. The function of this family is unknown.
Probab=26.11 E-value=22 Score=31.74 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=21.0
Q ss_pred cchhhhhcc----ch-hhhc--CC----CCCcchHHHHHHHHHHhhcCcccc
Q 036054 75 LDACCKIHD----EC-VDKK--GL----TNIKCHEKFKRCIKKVQKFGNVGF 115 (148)
Q Consensus 75 lD~CC~~HD----~C-Y~~~--~~----~~~~C~~~~~~c~~~~~~~~~~~F 115 (148)
|||||..|- .| |+.- +. .|.---+.|.-|..-.....+.||
T Consensus 76 LDWCC~Fh~P~D~sC~~GsPRiGIrleGeN~~FaP~LgLYS~vMtWtPipC~ 127 (377)
T PF07420_consen 76 LDWCCSFHPPDDTSCEHGSPRIGIRLEGENPFFAPILGLYSSVMTWTPIPCF 127 (377)
T ss_pred HHHHhccCCCCCcccccCCCceeeeeccCCcccchhhhhhhhheecccccee
Confidence 999999873 34 3321 21 223333444444433344566666
No 18
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=24.49 E-value=55 Score=18.35 Aligned_cols=23 Identities=26% Similarity=0.709 Sum_probs=15.2
Q ss_pred CCCcCCcCCCCCCCCCCCCCccc
Q 036054 54 RYGKYCGVGWSGYPGEKPCDELD 76 (148)
Q Consensus 54 ~YGcyCG~G~~G~~g~~PvD~lD 76 (148)
.|=|-|..|+.-.+.++.+.++|
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DId 23 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDID 23 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccCC
Confidence 36688999999654444555555
No 19
>PF12555 TPPK_C: Thiamine pyrophosphokinase C terminal; InterPro: IPR022215 This domain family is found in bacteria, and is approximately 50 amino acids in length. The proteins in this family catalyses the pyrophosphorylation of thiamine in yeast and synthesizes thiamine pyrophosphate (TPP), a thiamine coenzyme.
Probab=24.32 E-value=79 Score=20.52 Aligned_cols=26 Identities=12% Similarity=0.036 Sum_probs=14.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhcc
Q 036054 3 LGALVSFRTCVIATLAFVFIIVFSKS 28 (148)
Q Consensus 3 ~~~~~~~~m~~~l~~a~~~~~~~~~~ 28 (148)
-++|+|..--+.+.+|.++++.++..
T Consensus 7 Yrsris~~~~~~lvlaaLvav~v~l~ 32 (53)
T PF12555_consen 7 YRSRISGWALALLVLAALVAVAVALL 32 (53)
T ss_pred hcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 35777777555555555544444333
No 20
>PF08036 Antimicrobial_6: Diapausin family of antimicrobial peptide; InterPro: IPR012525 This family consists of diapausin-related antimicrobial peptides. Diapause during periods of environmental adversity is an essential part of the life cycle of many organisms with the molecular basis being different among animals. Diapause-specific peptides provide anti-fungal activity and act as N-type voltage-gated calcium channel blocker [].; GO: 0050832 defense response to fungus, 0005576 extracellular region; PDB: 2E2F_A.
Probab=22.15 E-value=31 Score=21.74 Aligned_cols=12 Identities=42% Similarity=0.935 Sum_probs=8.7
Q ss_pred Cccchhhhhccc
Q 036054 73 DELDACCKIHDE 84 (148)
Q Consensus 73 D~lD~CC~~HD~ 84 (148)
..-|.||++|-.
T Consensus 15 ~Er~eCCrAhG~ 26 (39)
T PF08036_consen 15 PERDECCRAHGY 26 (39)
T ss_dssp TTTHHHHHHTT-
T ss_pred hhHHHHHHHcCc
Confidence 346899999974
No 21
>PF08041 PetM: PetM family of cytochrome b6f complex subunit 7; InterPro: IPR012595 This family consists of the PetM family of cytochrome b6f complex subunit IV. The cytochrome b6f complex consists of 7 subunits and contains 2 beta haem's and 1 chlorophyll alpha per cytochrome f. It is highly active in transferring electrons from decylplastoquinol to oxidised plastocyanin [].; GO: 0009512 cytochrome b6f complex; PDB: 2ZT9_F 1Q90_M 2E76_F 2E75_F 2E74_F 2D2C_S 1VF5_S.
Probab=20.72 E-value=2e+02 Score=17.28 Aligned_cols=26 Identities=8% Similarity=0.056 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcccch
Q 036054 6 LVSFRTCVIATLAFVFIIVFSKSASA 31 (148)
Q Consensus 6 ~~~~~m~~~l~~a~~~~~~~~~~~g~ 31 (148)
++..+|..+.++.+.+.+++.-+||+
T Consensus 5 ~~a~i~~~lvlvGla~Gf~LLkiQG~ 30 (31)
T PF08041_consen 5 NIAVICFGLVLVGLALGFVLLKIQGG 30 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHHHHHHHHhheeecC
Confidence 35566777778888888888877763
No 22
>PF03503 Chlam_OMP3: Chlamydia cysteine-rich outer membrane protein 3; InterPro: IPR003517 Three cysteine-rich proteins (also believed to be lipoproteins) make up the extracellular matrix of the Chlamydial outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. As these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism. The largest of these is the major outer membrane protein (MOMP), and constitutes around 60% of the total protein for the membrane []. OMP2 is the second largest, with a molecular mass of 58kDa, while the OMP3 protein is ~15kDa []. MOMP is believed to elicit the strongest immune response, and has recently been linked to heart disease through its sequence similarity to a murine heart-muscle specific alpha myosin []. The OMP3 family plays a structural role in the outer membrane during the EB stage of the Chlamydial cell, and different biovars show a small, yet highly significant, change at peptide charge level []. Members of this family include Chlamydia trachomatis, Chlamydia pneumoniae, and Chlamydia psittaci.; GO: 0005201 extracellular matrix structural constituent
Probab=20.07 E-value=40 Score=22.53 Aligned_cols=24 Identities=29% Similarity=0.796 Sum_probs=17.9
Q ss_pred ccchhhhhccchhhhcCCCCCcchH
Q 036054 74 ELDACCKIHDECVDKKGLTNIKCHE 98 (148)
Q Consensus 74 ~lD~CC~~HD~CY~~~~~~~~~C~~ 98 (148)
.|-+||+.-|+|+++-- ...+|++
T Consensus 5 ~lssccrivdccfedpc-ap~sc~p 28 (55)
T PF03503_consen 5 SLSSCCRIVDCCFEDPC-APKSCNP 28 (55)
T ss_pred ecchheeeeeeeccCCC-CCCcccc
Confidence 47789999999999852 3455655
Done!