BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>036055
PQFFSKQWRYTAAPSAKVAYRIVHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASH
RLEEIDACSVECEVNIAQEWLDRLPPRSYEEEYVLKRISRARSRS

High Scoring Gene Products

Symbol, full name Information P value
AT3G07480 protein from Arabidopsis thaliana 1.0e-29
NSE_0297
iron-sulfur cluster binding protein 		protein from Neorickettsia sennetsu str. Miyayama 0.00021

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  036055
        (105 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2079611 - symbol:AT3G07480 species:3702 "Arabi...   329  1.0e-29   1
TIGR_CMR|NSE_0297 - symbol:NSE_0297 "iron-sulfur cluster ...    90  0.00021   1


>TAIR|locus:2079611 [details] [associations]
            symbol:AT3G07480 species:3702 "Arabidopsis thaliana"
            [GO:0005739 "mitochondrion" evidence=ISM;IDA] [GO:0009055 "electron
            carrier activity" evidence=IEA] [GO:0051536 "iron-sulfur cluster
            binding" evidence=IEA] [GO:0009507 "chloroplast" evidence=IDA]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=RCA] [GO:0009853 "photorespiration" evidence=RCA]
            [GO:0051788 "response to misfolded protein" evidence=RCA]
            [GO:0080129 "proteasome core complex assembly" evidence=RCA]
            InterPro:IPR001041 GO:GO:0005739 GO:GO:0009507 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0009055 GO:GO:0051536
            Gene3D:3.10.20.30 InterPro:IPR012675 SUPFAM:SSF54292 EMBL:AC009853
            HSSP:P00257 EMBL:AF386949 EMBL:AY081513 EMBL:AY086887
            IPI:IPI00518538 RefSeq:NP_566309.1 UniGene:At.18424
            UniGene:At.71515 ProteinModelPortal:Q9SRR8 SMR:Q9SRR8 IntAct:Q9SRR8
            STRING:Q9SRR8 PaxDb:Q9SRR8 PRIDE:Q9SRR8 ProMEX:Q9SRR8
            EnsemblPlants:AT3G07480.1 GeneID:819936 KEGG:ath:AT3G07480
            TAIR:At3g07480 eggNOG:NOG315560 HOGENOM:HOG000243238
            InParanoid:Q9SRR8 OMA:ECEVHIA PhylomeDB:Q9SRR8
            ProtClustDB:CLSN2688148 ArrayExpress:Q9SRR8 Genevestigator:Q9SRR8
            Uniprot:Q9SRR8
        Length = 159

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 63/88 (71%), Positives = 78/88 (88%)

Query:    15 SAKVAYRIVHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEV 74
             S KV+ RIV L AIDPDG K+ IIGL+ QTLL+ALT++GLIDPASHRL++I+ACS ECEV
Sbjct:    38 SKKVSDRIVKLSAIDPDGYKQDIIGLSGQTLLRALTHTGLIDPASHRLDDIEACSAECEV 97

Query:    75 NIAQEWLDRLPPRSYEEEYVLKRISRAR 102
              IA+EWL++LPPR+Y+EEYVLKR SR+R
Sbjct:    98 QIAEEWLEKLPPRTYDEEYVLKRSSRSR 125


>TIGR_CMR|NSE_0297 [details] [associations]
            symbol:NSE_0297 "iron-sulfur cluster binding protein"
            species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0009055
            "electron carrier activity" evidence=ISS] InterPro:IPR001041
            InterPro:IPR001055 InterPro:IPR018298 Pfam:PF00111 PRINTS:PR00355
            PROSITE:PS00814 PROSITE:PS51085 GO:GO:0009055 GO:GO:0046872
            GO:GO:0051537 Gene3D:3.10.20.30 InterPro:IPR012675 SUPFAM:SSF54292
            eggNOG:COG0633 HOGENOM:HOG000244518 EMBL:CP000237
            GenomeReviews:CP000237_GR RefSeq:YP_506187.1
            ProteinModelPortal:Q2GEA9 STRING:Q2GEA9 GeneID:3931922
            KEGG:nse:NSE_0297 PATRIC:22680687 OMA:CHVIVES
            ProtClustDB:CLSK2527638 BioCyc:NSEN222891:GHFU-323-MONOMER
            Uniprot:Q2GEA9
        Length = 111

 Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
 Identities = 24/68 (35%), Positives = 36/68 (52%)

Query:    28 IDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLDRLPPR 87
             I+PDG++R       +T+L     +G ID      E   ACS  C V +  +W D+LPP 
Sbjct:    10 IEPDGKERHCTAHEGETILTVAHKNG-ID-LEGACEGSLACST-CHVIVESQWFDKLPPI 66

Query:    88 SYEEEYVL 95
             S +E+ +L
Sbjct:    67 SADEDDML 74


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      105       105   0.00091  102 3  11 22  0.41    30
                                                     29  0.39    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  573 (61 KB)
  Total size of DFA:  127 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.43u 0.20s 11.63t   Elapsed:  00:00:01
  Total cpu time:  11.43u 0.20s 11.63t   Elapsed:  00:00:01
  Start:  Mon May 20 22:06:24 2013   End:  Mon May 20 22:06:25 2013

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