Query 036055
Match_columns 105
No_of_seqs 116 out of 383
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 08:58:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036055.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036055hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3309 Ferredoxin [Energy pro 99.9 6.7E-24 1.4E-28 158.3 8.5 77 23-102 44-120 (159)
2 PTZ00490 Ferredoxin superfamil 99.8 7.6E-20 1.6E-24 134.2 7.7 77 20-98 33-109 (143)
3 PLN02593 adrenodoxin-like ferr 99.8 1.7E-18 3.8E-23 122.2 7.7 72 23-97 1-73 (117)
4 COG0633 Fdx Ferredoxin [Energy 99.5 2.1E-13 4.6E-18 94.0 6.6 70 22-96 1-71 (102)
5 TIGR02007 fdx_isc ferredoxin, 99.3 5.8E-12 1.3E-16 87.5 6.9 70 23-98 1-75 (110)
6 TIGR01941 nqrF NADH:ubiquinone 98.8 6.9E-09 1.5E-13 84.7 6.7 70 21-97 28-97 (405)
7 PF00111 Fer2: 2Fe-2S iron-sul 98.5 9.4E-08 2E-12 60.9 4.0 64 28-97 1-66 (78)
8 TIGR02008 fdx_plant ferredoxin 98.4 6.7E-07 1.4E-11 60.7 5.1 56 23-82 3-58 (97)
9 PRK05464 Na(+)-translocating N 98.3 1.4E-06 3E-11 71.3 6.4 71 18-97 31-101 (409)
10 cd00207 fer2 2Fe-2S iron-sulfu 98.3 2.1E-06 4.5E-11 54.8 5.4 56 26-86 2-57 (84)
11 CHL00134 petF ferredoxin; Vali 97.9 3.1E-05 6.7E-10 52.9 5.5 54 24-81 5-59 (99)
12 PLN03136 Ferredoxin; Provision 97.9 4.8E-05 1.1E-09 56.3 6.7 56 22-82 54-109 (148)
13 PRK10713 2Fe-2S ferredoxin Yfa 97.8 3.7E-05 8.1E-10 50.9 4.4 54 22-82 1-55 (84)
14 PTZ00038 ferredoxin; Provision 97.5 0.00032 6.9E-09 54.1 6.0 52 23-79 96-147 (191)
15 PRK07569 bidirectional hydroge 97.4 0.00038 8.3E-09 53.6 5.7 47 31-80 9-58 (234)
16 PRK09908 xanthine dehydrogenas 97.3 0.00054 1.2E-08 51.5 5.6 55 21-79 5-59 (159)
17 PRK05713 hypothetical protein; 97.2 0.0005 1.1E-08 54.2 4.4 49 22-79 1-49 (312)
18 PF13510 Fer2_4: 2Fe-2S iron-s 97.1 0.0013 2.8E-08 43.5 4.8 55 20-80 1-62 (82)
19 PRK11872 antC anthranilate dio 97.0 0.0016 3.5E-08 52.1 5.5 53 24-80 4-56 (340)
20 PRK07609 CDP-6-deoxy-delta-3,4 96.7 0.0036 7.9E-08 49.5 5.2 53 23-82 3-55 (339)
21 PRK08166 NADH dehydrogenase su 96.4 0.0063 1.4E-07 54.4 5.3 50 22-77 1-53 (847)
22 TIGR03193 4hydroxCoAred 4-hydr 96.3 0.0059 1.3E-07 45.4 4.2 48 29-79 5-53 (148)
23 PRK10684 HCP oxidoreductase, N 96.2 0.016 3.4E-07 46.0 6.4 54 22-82 248-301 (332)
24 PRK11433 aldehyde oxidoreducta 96.1 0.016 3.5E-07 45.5 5.9 55 22-80 49-104 (217)
25 COG3894 Uncharacterized metal- 95.7 0.016 3.4E-07 51.2 4.5 69 22-98 1-69 (614)
26 TIGR02160 PA_CoA_Oxy5 phenylac 95.5 0.03 6.5E-07 44.5 5.2 55 22-81 262-317 (352)
27 TIGR03198 pucE xanthine dehydr 95.3 0.038 8.3E-07 41.1 4.8 48 29-79 7-55 (151)
28 PRK09800 putative hypoxanthine 94.8 0.055 1.2E-06 49.9 5.3 52 25-79 3-54 (956)
29 PRK12814 putative NADPH-depend 94.5 0.073 1.6E-06 46.5 5.2 55 22-80 1-58 (652)
30 PRK09130 NADH dehydrogenase su 94.4 0.09 2E-06 46.6 5.6 51 22-78 1-54 (687)
31 TIGR02963 xanthine_xdhA xanthi 94.1 0.068 1.5E-06 45.5 4.0 44 30-76 5-50 (467)
32 COG1034 NuoG NADH dehydrogenas 94.0 0.12 2.6E-06 46.6 5.6 52 22-79 1-55 (693)
33 PRK07860 NADH dehydrogenase su 94.0 0.13 2.8E-06 46.2 5.7 53 21-79 3-58 (797)
34 PRK08493 NADH dehydrogenase su 93.9 0.14 3E-06 46.8 5.9 53 22-80 1-56 (819)
35 TIGR03313 Se_sel_red_Mo probab 93.9 0.079 1.7E-06 48.8 4.4 48 30-79 3-50 (951)
36 COG2080 CoxS Aerobic-type carb 93.7 0.2 4.4E-06 37.8 5.5 47 30-79 8-55 (156)
37 PTZ00305 NADH:ubiquinone oxido 93.5 0.21 4.5E-06 41.1 5.8 47 31-80 74-124 (297)
38 TIGR01973 NuoG NADH-quinone ox 92.8 0.19 4.2E-06 43.3 4.8 47 31-80 4-53 (603)
39 TIGR02969 mam_aldehyde_ox alde 92.7 0.15 3.2E-06 48.6 4.3 52 23-78 1-54 (1330)
40 PRK05950 sdhB succinate dehydr 92.4 0.34 7.3E-06 37.2 5.3 45 33-79 18-67 (232)
41 COG3383 Uncharacterized anaero 92.3 0.37 7.9E-06 44.8 6.1 54 20-79 3-59 (978)
42 PRK09129 NADH dehydrogenase su 91.9 0.39 8.4E-06 42.6 5.7 53 22-80 1-56 (776)
43 PLN00192 aldehyde oxidase 88.1 0.61 1.3E-05 44.6 4.0 49 25-77 6-56 (1344)
44 TIGR03311 Se_dep_Molyb_1 selen 88.1 0.6 1.3E-05 42.6 3.8 45 30-79 5-50 (848)
45 COG2871 NqrF Na+-transporting 87.5 1 2.3E-05 38.0 4.6 58 25-85 37-94 (410)
46 PRK06259 succinate dehydrogena 84.7 1.3 2.8E-05 37.1 3.9 44 34-79 22-69 (486)
47 cd01760 RBD Ubiquitin-like dom 84.5 1.3 2.8E-05 29.1 3.1 30 25-54 2-35 (72)
48 PRK12577 succinate dehydrogena 84.5 1.8 4E-05 35.2 4.6 45 33-79 19-67 (329)
49 PRK12386 fumarate reductase ir 83.3 3.4 7.4E-05 32.8 5.5 44 33-79 20-68 (251)
50 COG4630 XdhA Xanthine dehydrog 80.5 4.7 0.0001 35.1 5.7 54 21-77 5-59 (493)
51 cd01817 RGS12_RBD Ubiquitin do 80.2 2.5 5.5E-05 28.3 3.2 29 27-55 4-36 (73)
52 smart00455 RBD Raf-like Ras-bi 79.0 3.3 7.2E-05 26.7 3.4 30 25-54 2-35 (70)
53 COG0014 ProA Gamma-glutamyl ph 78.7 3.8 8.3E-05 35.3 4.6 42 30-79 193-235 (417)
54 PRK12576 succinate dehydrogena 76.0 9.5 0.00021 30.5 5.9 44 33-78 25-72 (279)
55 PF13085 Fer2_3: 2Fe-2S iron-s 75.5 3.3 7.2E-05 29.2 2.9 44 33-78 19-66 (110)
56 PRK13552 frdB fumarate reducta 71.2 10 0.00022 29.6 5.0 18 33-50 24-41 (239)
57 PF02196 RBD: Raf-like Ras-bin 70.9 3.9 8.5E-05 26.4 2.2 30 25-54 3-36 (71)
58 PF02824 TGS: TGS domain; Int 67.2 6.1 0.00013 24.4 2.4 27 25-53 1-27 (60)
59 PRK12385 fumarate reductase ir 66.8 9.2 0.0002 29.9 3.9 45 33-79 25-73 (244)
60 PF12957 DUF3846: Domain of un 65.3 19 0.00041 24.0 4.7 48 24-80 1-48 (95)
61 PF14847 Ras_bdg_2: Ras-bindin 62.3 11 0.00024 26.4 3.3 33 24-56 2-38 (105)
62 PF06290 PsiB: Plasmid SOS inh 61.4 10 0.00022 28.5 3.0 36 2-37 58-101 (143)
63 cd01816 Raf_RBD Ubiquitin doma 59.5 13 0.00028 25.1 3.0 41 25-78 2-46 (74)
64 PRK08640 sdhB succinate dehydr 56.9 28 0.00061 27.4 5.0 18 33-50 23-40 (249)
65 PF11470 TUG-UBL1: GLUT4 regul 56.0 10 0.00022 24.4 2.0 29 27-55 1-33 (65)
66 COG3061 OapA Cell envelope opa 55.8 9.2 0.0002 30.8 2.1 29 28-56 153-181 (242)
67 cd01791 Ubl5 UBL5 ubiquitin-li 52.8 25 0.00055 22.5 3.5 34 22-55 1-38 (73)
68 TIGR00384 dhsB succinate dehyd 52.3 17 0.00037 27.6 3.1 44 33-78 15-62 (220)
69 TIGR03527 selenium_YedF seleni 50.4 17 0.00036 27.8 2.7 42 23-74 121-162 (194)
70 PRK13701 psiB plasmid SOS inhi 49.6 33 0.00072 25.7 4.1 34 2-35 58-99 (144)
71 COG4427 Uncharacterized protei 49.1 11 0.00024 31.6 1.6 41 45-89 131-191 (350)
72 PLN02906 xanthine dehydrogenas 46.7 20 0.00044 34.5 3.2 33 43-78 2-34 (1319)
73 PF05423 Mycobact_memb: Mycoba 41.7 40 0.00087 24.6 3.5 35 2-39 47-81 (140)
74 KOG4165 Gamma-glutamyl phospha 40.9 15 0.00032 31.7 1.2 10 70-79 221-230 (433)
75 COG0479 FrdB Succinate dehydro 40.1 56 0.0012 26.0 4.3 44 33-78 20-67 (234)
76 PRK08364 sulfur carrier protei 39.9 48 0.0011 20.8 3.3 34 21-55 3-36 (70)
77 cd01792 ISG15_repeat1 ISG15 ub 38.1 51 0.0011 20.9 3.2 24 24-47 4-27 (80)
78 PF00379 Chitin_bind_4: Insect 37.5 49 0.0011 19.6 2.9 20 22-41 28-47 (52)
79 PF13103 TonB_2: TonB C termin 37.1 82 0.0018 19.6 4.1 45 6-53 14-61 (85)
80 PF09626 DHC: Dihaem cytochrom 36.5 11 0.00025 26.9 -0.0 14 66-80 3-16 (120)
81 PF13570 PQQ_3: PQQ-like domai 36.5 70 0.0015 17.5 3.3 33 6-40 3-39 (40)
82 PLN00129 succinate dehydrogena 36.2 87 0.0019 25.3 5.0 18 34-51 63-81 (276)
83 PF04225 OapA: Opacity-associa 34.7 37 0.0008 22.5 2.2 23 34-56 2-24 (85)
84 PF12224 Amidoligase_2: Putati 34.6 54 0.0012 24.6 3.3 29 43-80 95-123 (252)
85 PF14801 GCD14_N: tRNA methylt 34.2 46 0.00099 21.2 2.4 20 24-43 11-30 (54)
86 TIGR01917 gly_red_sel_B glycin 34.2 14 0.00031 32.0 0.2 27 40-73 323-350 (431)
87 PF00659 POLO_box: POLO box du 32.4 72 0.0016 19.6 3.2 36 6-41 16-51 (68)
88 PRK13963 unkown domain/putativ 31.5 30 0.00066 28.1 1.6 31 21-51 18-55 (258)
89 PF14030 DUF4245: Protein of u 30.9 2.2E+02 0.0048 21.1 7.9 91 1-98 61-167 (169)
90 KOG4616 Mitochondrial ribosoma 30.6 55 0.0012 24.1 2.7 28 25-52 60-87 (137)
91 TIGR01918 various_sel_PB selen 30.2 16 0.00035 31.7 -0.2 27 40-73 323-350 (431)
92 PRK08942 D,D-heptose 1,7-bisph 30.0 32 0.00068 24.6 1.4 34 21-55 1-47 (181)
93 PF00034 Cytochrom_C: Cytochro 30.0 14 0.0003 22.1 -0.4 13 66-80 10-22 (91)
94 KOG1113 cAMP-dependent protein 29.8 27 0.00059 29.8 1.1 34 70-103 172-206 (368)
95 cd01803 Ubiquitin Ubiquitin. U 29.6 92 0.002 18.8 3.3 25 24-48 2-26 (76)
96 PF07627 PSCyt3: Protein of un 29.1 11 0.00025 26.2 -1.0 12 66-78 70-81 (101)
97 TIGR02518 EutH_ACDH acetaldehy 27.9 63 0.0014 27.6 3.0 30 42-79 196-225 (488)
98 COG0242 Def N-formylmethionyl- 27.6 89 0.0019 23.7 3.5 25 16-40 104-128 (168)
99 PRK13619 psbV cytochrome c-550 27.5 44 0.00096 25.5 1.8 45 26-93 35-82 (160)
100 PF00578 AhpC-TSA: AhpC/TSA fa 27.2 43 0.00093 21.6 1.5 25 18-42 1-25 (124)
101 cd01818 TIAM1_RBD Ubiquitin do 27.1 57 0.0012 22.1 2.1 28 27-54 4-35 (77)
102 PF14495 Cytochrom_C550: Cytoc 27.1 15 0.00032 27.3 -0.8 20 28-47 11-33 (135)
103 cd06220 DHOD_e_trans_like2 FAD 26.3 71 0.0015 23.8 2.8 40 36-76 171-215 (233)
104 PRK00054 dihydroorotate dehydr 26.1 84 0.0018 23.7 3.2 44 34-78 183-231 (250)
105 PRK07570 succinate dehydrogena 25.8 65 0.0014 25.5 2.6 18 33-50 20-38 (250)
106 PRK06437 hypothetical protein; 25.0 1.3E+02 0.0029 18.8 3.5 25 31-55 9-33 (67)
107 cd01804 midnolin_N Ubiquitin-l 24.0 1.5E+02 0.0031 18.8 3.6 25 23-47 2-26 (78)
108 PF09227 DUF1962: Domain of un 23.9 30 0.00064 22.6 0.3 11 65-75 46-57 (64)
109 TIGR03045 PS_II_C550 cytochrom 23.9 40 0.00087 25.3 1.0 21 27-47 36-59 (159)
110 PRK13621 psbV cytochrome c-550 23.7 38 0.00083 25.9 0.9 21 27-47 51-74 (170)
111 TIGR03806 chp_HNE_0200 conserv 23.7 69 0.0015 26.4 2.4 32 24-77 123-154 (317)
112 PF03658 Ub-RnfH: RnfH family 23.5 82 0.0018 21.4 2.4 31 24-54 4-35 (84)
113 PF10976 DUF2790: Protein of u 23.0 1.1E+02 0.0023 20.5 2.8 16 24-39 54-69 (78)
114 cd01787 GRB7_RA RA (RAS-associ 23.0 1.3E+02 0.0029 20.5 3.3 26 25-50 5-30 (85)
115 cd08344 MhqB_like_N N-terminal 23.0 90 0.002 19.9 2.5 15 24-38 93-107 (112)
116 PF03702 UPF0075: Uncharacteri 22.6 1.1E+02 0.0025 25.5 3.5 63 22-88 168-237 (364)
117 cd01806 Nedd8 Nebb8-like ubiq 22.5 1.4E+02 0.0029 18.0 3.1 24 24-47 2-25 (76)
118 cd01809 Scythe_N Ubiquitin-lik 22.5 1.4E+02 0.003 17.8 3.1 25 24-48 2-26 (72)
119 PF01359 Transposase_1: Transp 22.5 84 0.0018 20.7 2.2 40 5-45 8-54 (81)
120 cd00532 MGS-like MGS-like doma 22.4 1.4E+02 0.0031 20.0 3.5 28 28-55 74-101 (112)
121 PF03990 DUF348: Domain of unk 22.3 1.6E+02 0.0035 16.8 3.2 26 29-55 5-30 (43)
122 PRK13620 psbV cytochrome c-550 22.2 37 0.0008 27.0 0.5 20 27-46 89-111 (215)
123 cd02985 TRX_CDSP32 TRX family, 21.6 2.1E+02 0.0045 18.5 4.0 31 22-53 72-103 (103)
124 PF11148 DUF2922: Protein of u 21.6 2.2E+02 0.0047 17.8 4.4 32 23-54 3-43 (69)
125 CHL00133 psbV photosystem II c 21.5 47 0.001 25.1 1.0 20 27-46 37-59 (163)
126 PF03413 PepSY: Peptidase prop 21.4 1.2E+02 0.0025 17.5 2.6 20 24-43 35-59 (64)
127 cd01805 RAD23_N Ubiquitin-like 21.2 1.6E+02 0.0034 18.0 3.2 25 24-48 2-26 (77)
128 KOG0393 Ras-related small GTPa 20.6 51 0.0011 25.6 1.0 13 66-78 13-25 (198)
129 COG1724 Predicted RNA binding 20.5 2.2E+02 0.0049 18.7 3.9 31 24-54 30-65 (66)
130 cd07267 THT_Oxygenase_N N-term 20.5 1.1E+02 0.0023 19.7 2.5 16 24-39 94-109 (113)
131 PF03931 Skp1_POZ: Skp1 family 20.2 1.8E+02 0.0039 17.6 3.3 31 24-54 2-35 (62)
132 PF13772 AIG2_2: AIG2-like fam 20.1 2.4E+02 0.0051 18.0 4.0 37 19-55 27-76 (83)
No 1
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=99.90 E-value=6.7e-24 Score=158.32 Aligned_cols=77 Identities=30% Similarity=0.406 Sum_probs=68.6
Q ss_pred eEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccccCCCCChHHHHHHHhhhhhc
Q 036055 23 VHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLDRLPPRSYEEEYVLKRISRAR 102 (105)
Q Consensus 23 ~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~klp~~~e~E~dMLd~~~R~~ 102 (105)
+|||||++||.+..+.+.+|+|||++|++|||+. .+.+++.-+|. ||||||+++|+.+||+|+|+|.||||.|+=|+
T Consensus 44 i~Itfv~~dG~~~~i~g~vGdtlLd~ah~n~idl--eGACEgslACS-TCHViv~~~~yekl~ep~DeE~DmLDlA~gLt 120 (159)
T KOG3309|consen 44 IKITFVDPDGEEIKIKGKVGDTLLDAAHENNLDL--EGACEGSLACS-TCHVIVDEEYYEKLPEPEDEENDMLDLAFGLT 120 (159)
T ss_pred EEEEEECCCCCEEEeeeecchHHHHHHHHcCCCc--ccccccccccc-ceEEEEcHHHHhcCCCCcchHHHHHHhhhccc
Confidence 8999999999999999999999999999999953 34566666675 99999999999999999999999999876554
No 2
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=99.81 E-value=7.6e-20 Score=134.23 Aligned_cols=77 Identities=22% Similarity=0.255 Sum_probs=63.3
Q ss_pred CcceEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccccCCCCChHHHHHHHhh
Q 036055 20 YRIVHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLDRLPPRSYEEEYVLKRI 98 (105)
Q Consensus 20 ~~M~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~klp~~~e~E~dMLd~~ 98 (105)
..-++|+|+++||++++|+++.|+|||++|++|+.++ +.+.+.|.+.| +||||||+++|++++|+++++|++||+.+
T Consensus 33 ~g~v~I~~~~~dG~~~~v~~~~G~sLLeal~~~~~i~-i~~~CGG~g~C-gtC~V~V~~g~~~~l~~~~~~E~~~L~~~ 109 (143)
T PTZ00490 33 PGKVKVCVKKRDGTHCDVEVPVGMSLMHALRDVAKLD-VEGTCNGCMQC-ATCHVYLSAASFKKLGGPSEEEEDVLAKA 109 (143)
T ss_pred CCcEEEEEEcCCCCEEEEEECCCccHHHHHHHcCCCC-ccccCCCCCEe-CCCEEEECCCccccCCCCChHHHHHhhcc
Confidence 3467999999999999999999999999999975422 11223333344 69999999999999999999999999865
No 3
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=99.76 E-value=1.7e-18 Score=122.18 Aligned_cols=72 Identities=24% Similarity=0.367 Sum_probs=62.6
Q ss_pred eEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEe-CccccccCCCCChHHHHHHHh
Q 036055 23 VHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNI-AQEWLDRLPPRSYEEEYVLKR 97 (105)
Q Consensus 23 ~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyV-d~ew~~klp~~~e~E~dMLd~ 97 (105)
.+|+||+++|.+++|++..|+|||++|.+|||+ +.+.+.|.+.| +||||+| +.+|.++|+|++++|.+||+.
T Consensus 1 ~~V~fi~~~G~~~~v~~~~G~tLl~a~~~~gi~--i~~~CgG~g~C-~tC~V~V~~~~~~~~l~~~~~~E~~~L~~ 73 (117)
T PLN02593 1 ISVTFVDKDGEERTVKAPVGMSLLEAAHENDIE--LEGACEGSLAC-STCHVIVMDEKVYNKLPEPTDEENDMLDL 73 (117)
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHcCCC--CCccCCCccee-CCCEEEEecCccccCCCCCChHHHHHHhc
Confidence 489999999999999999999999999999995 22334444556 5999999 889999999999999999984
No 4
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=99.45 E-value=2.1e-13 Score=94.00 Aligned_cols=70 Identities=23% Similarity=0.350 Sum_probs=58.7
Q ss_pred ceEEEEECCCCCEEEEEccc-cHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccccCCCCChHHHHHHH
Q 036055 22 IVHLFAIDPDGQKRPIIGLA-VQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLDRLPPRSYEEEYVLK 96 (105)
Q Consensus 22 M~~Itfid~DG~~~~V~a~~-G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~klp~~~e~E~dMLd 96 (105)
|+++.|+.++|....+...+ |.|||++|.+|||+. .+.+.+ +.| +||||+|.+. ++.++++++.|++||+
T Consensus 1 ~~~~~~v~~~~~~~~~~~~~~g~tiLe~a~~~gi~i--~~~C~~-g~C-~TC~v~v~~G-~~~v~~~~~~e~~~l~ 71 (102)
T COG0633 1 MPKIAFVTIDGEGDVTEAVNEGETLLEAAERNGIPI--EYACRG-GAC-GTCRVKVLEG-FDEVSPPEESEEDLLD 71 (102)
T ss_pred CCceEEEeccCCcceEEeccCCcHHHHHHHHCCCcc--eecCCC-Ccc-CccEEEEecC-cccCCCcchHHHHHHH
Confidence 78999999999777777666 999999999999962 222332 356 5999999999 9999999999999998
No 5
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=99.32 E-value=5.8e-12 Score=87.50 Aligned_cols=70 Identities=23% Similarity=0.368 Sum_probs=53.5
Q ss_pred eEEEEE-----CCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccccCCCCChHHHHHHHh
Q 036055 23 VHLFAI-----DPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLDRLPPRSYEEEYVLKR 97 (105)
Q Consensus 23 ~~Itfi-----d~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~klp~~~e~E~dMLd~ 97 (105)
|+|.|| .+.| +++++..|+|||++|.++||+- .+.+.|.|.| +||||+|.+. ...+++.++.|+++|+.
T Consensus 1 ~~~~~~~~~~~~p~~--~~~~~~~g~tLL~a~~~~gi~i--~~~CgG~G~C-gtC~v~V~~G-~~~~~~~~~~e~~~L~~ 74 (110)
T TIGR02007 1 PKIVFLPHEDLCPEG--AVVEAKPGETILDVALDNGIEI--EHACEKSCAC-TTCHCIVREG-FDSLEEASEQEEDMLDK 74 (110)
T ss_pred CeEEEEeCcccCCCC--eEEEECCCChHHHHHHHcCCCc--cccCCCCcee-CCCEEEEeec-cccCCCCCHHHHHHHhh
Confidence 367777 4444 6788899999999999999952 2234434556 5999999876 57799999999999975
Q ss_pred h
Q 036055 98 I 98 (105)
Q Consensus 98 ~ 98 (105)
.
T Consensus 75 ~ 75 (110)
T TIGR02007 75 A 75 (110)
T ss_pred c
Confidence 4
No 6
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=98.84 E-value=6.9e-09 Score=84.66 Aligned_cols=70 Identities=17% Similarity=0.150 Sum_probs=53.2
Q ss_pred cceEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccccCCCCChHHHHHHHh
Q 036055 21 RIVHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLDRLPPRSYEEEYVLKR 97 (105)
Q Consensus 21 ~M~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~klp~~~e~E~dMLd~ 97 (105)
+|.+|+++..+|+.+++++..|+|||++|.++|++. .+.+.+-|.|| ||||.|.+.+.. ++..|.++|+.
T Consensus 28 ~~~~v~v~~~~~~~~~~~~~~g~tlL~a~~~~gi~i--~~~C~g~G~Cg-~C~v~v~~G~~~----~~~~~~~~L~~ 97 (405)
T TIGR01941 28 SSGDITIGINDDEEKSITVPAGGKLLNTLASNGIFI--SSACGGGGTCG-QCRVRVVEGGGE----ILPTELSHFSK 97 (405)
T ss_pred ccccEEEEEcCCCceEEEECCCChHHHHHHHcCCCC--cccCCCccEeC-CCEEEEccCCcC----CChhhhhhcCH
Confidence 367799999999999999999999999999999963 22344334575 999999887753 33445566653
No 7
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=98.55 E-value=9.4e-08 Score=60.95 Aligned_cols=64 Identities=20% Similarity=0.262 Sum_probs=45.6
Q ss_pred ECCCCCEEEEEccccHH-HHHHHHHC-CCCCccccCCCccccccCceeEEeCccccccCCCCChHHHHHHHh
Q 036055 28 IDPDGQKRPIIGLAVQT-LLKALTNS-GLIDPASHRLEEIDACSVECEVNIAQEWLDRLPPRSYEEEYVLKR 97 (105)
Q Consensus 28 id~DG~~~~V~a~~G~S-LMeaa~~n-Gv~g~~~~~i~gi~~CGATCHVyVd~ew~~klp~~~e~E~dMLd~ 97 (105)
|..||+.+++++.+|+| |+++|.++ |+.. .+.+.+ +.| +||||+|.+.+. ... ....|.+.++.
T Consensus 1 i~i~g~~~~~~~~~~~~~ll~~~~~~~gi~i--~~~C~~-g~C-g~C~v~v~~G~~-~~~-~~~~~~~~~~~ 66 (78)
T PF00111_consen 1 ITINGKGVTVEVPPGETLLLDALERAGGIGI--PYSCGG-GGC-GTCRVRVLEGEV-QSN-ETFLEDEELAE 66 (78)
T ss_dssp EETTTEEEEEEEETTSBBHHHHHHHTTTTTS--TTSSSS-SSS-STTEEEEEESEE-ETT-TSSSHHHHHHT
T ss_pred CEECCeEEEEEeCCCccHHHHHHHHcCCCCc--ccCCCC-Ccc-CCcEEEEeeCcc-cCC-cccCCHHHHHc
Confidence 56799999999999999 99999999 8842 112222 336 499999998877 333 44555555543
No 8
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=98.39 E-value=6.7e-07 Score=60.65 Aligned_cols=56 Identities=23% Similarity=0.344 Sum_probs=43.5
Q ss_pred eEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccc
Q 036055 23 VHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLD 82 (105)
Q Consensus 23 ~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~ 82 (105)
-+|+|+.++|..+++++..|+||+++|.++||+- .+.+. .|.|| +|+|.|-+.-..
T Consensus 3 ~~v~~~~~~~~~~~~~~~~g~tLLda~~~~Gi~i--~~~C~-~G~Cg-~C~v~v~~G~~~ 58 (97)
T TIGR02008 3 YKVTLVNPDGGEETIECPDDQYILDAAEEAGIDL--PYSCR-AGACS-TCAGKVEEGTVD 58 (97)
T ss_pred EEEEEEECCCCEEEEEECCCCcHHHHHHHcCCCC--CcCCC-CccCC-CCceEEEeCcEe
Confidence 3688888999999999999999999999999953 12222 25574 999999765433
No 9
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=98.32 E-value=1.4e-06 Score=71.30 Aligned_cols=71 Identities=23% Similarity=0.207 Sum_probs=48.7
Q ss_pred ccCcceEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccccCCCCChHHHHHHHh
Q 036055 18 VAYRIVHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLDRLPPRSYEEEYVLKR 97 (105)
Q Consensus 18 ~~~~M~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~klp~~~e~E~dMLd~ 97 (105)
+.....+|++. ++..+++++..|+|||++|.++|++. .+.+.+.|.|| ||||+|.+.+.... ..|..+|..
T Consensus 31 ~~~~~~~i~~~--~~~~~~~~~~~g~tLL~a~~~~gi~i--~~~C~g~G~Cg-tC~v~v~~G~~~~~----~~e~~~l~~ 101 (409)
T PRK05464 31 VPSGDVTIKIN--GDPEKTITVPAGGKLLGALASNGIFL--SSACGGGGSCG-QCRVKVKEGGGDIL----PTELSHISK 101 (409)
T ss_pred ccCccEEEEEc--CCCcEEEEECCCchHHHHHHHcCCCc--ccCCCCccEeC-CCEEEEecCCcCCC----hhhhhhcCH
Confidence 34446677762 22357899999999999999999953 23355446685 99999988875432 345556643
No 10
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=98.29 E-value=2.1e-06 Score=54.75 Aligned_cols=56 Identities=23% Similarity=0.311 Sum_probs=41.8
Q ss_pred EEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccccCCC
Q 036055 26 FAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLDRLPP 86 (105)
Q Consensus 26 tfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~klp~ 86 (105)
+|+.+ |..++++++.|+|||+++.++|++- .+.+.+ +.|| +|+|.|.+.+....++
T Consensus 2 ~~~~~-~~~~~~~~~~g~~ll~al~~~g~~~--~~~C~~-g~Cg-~C~v~v~~G~~~~~~~ 57 (84)
T cd00207 2 TINVP-GSGVEVEVPEGETLLDAAREAGIDI--PYSCRA-GACG-TCKVEVVEGEVDQSDP 57 (84)
T ss_pred EEecC-CCCEEEEECCCCcHHHHHHHcCCCc--ccCCCC-cCCc-CCEEEEeeCccccCcc
Confidence 44433 7778999999999999999999953 122221 4575 9999999988777665
No 11
>CHL00134 petF ferredoxin; Validated
Probab=97.90 E-value=3.1e-05 Score=52.91 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=40.5
Q ss_pred EEEEEC-CCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCcccc
Q 036055 24 HLFAID-PDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWL 81 (105)
Q Consensus 24 ~Itfid-~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~ 81 (105)
+|++.. .+|..+++++..|+||+++|.++||+-+ +.+. .|.|| ||+|.|-..-.
T Consensus 5 ~v~~~~~~~~~~~~~~~~~~~tLL~a~~~~Gi~i~--~~C~-~G~Cg-~C~v~v~~G~v 59 (99)
T CHL00134 5 KVTLLSEEEGIDVTIDCPDDVYILDAAEEQGIDLP--YSCR-AGACS-TCAGKVTEGTV 59 (99)
T ss_pred EEEEEecCCCCeEEEEECCCCcHHHHHHHcCCCCC--cCCC-CccCC-CCEEEEEeCcc
Confidence 566655 3888999999999999999999999531 2222 25675 99999966533
No 12
>PLN03136 Ferredoxin; Provisional
Probab=97.89 E-value=4.8e-05 Score=56.27 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=41.9
Q ss_pred ceEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccc
Q 036055 22 IVHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLD 82 (105)
Q Consensus 22 M~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~ 82 (105)
..+|+|++++| .+++++..|+||+++|.++||+.+++ +. .|.|| +|.+.|-..-.+
T Consensus 54 ~~~V~l~~~~~-~~~~~~~~g~tILdAa~~~Gi~lp~s--Cr-~G~CG-tC~~~l~~G~V~ 109 (148)
T PLN03136 54 TYKVKFITPEG-EQEVECEEDVYVLDAAEEAGIDLPYS--CR-AGSCS-SCAGKVVSGSID 109 (148)
T ss_pred eEEEEEecCCC-cEEEEeCCCCcHHHHHHHcCCCCCcC--CC-CccCC-CCEEEEecCcCc
Confidence 46788887776 67899999999999999999964322 22 25675 999999655443
No 13
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=97.80 E-value=3.7e-05 Score=50.92 Aligned_cols=54 Identities=15% Similarity=0.239 Sum_probs=36.7
Q ss_pred ceEEEEECCCCCEEEEEccc-cHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccc
Q 036055 22 IVHLFAIDPDGQKRPIIGLA-VQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLD 82 (105)
Q Consensus 22 M~~Itfid~DG~~~~V~a~~-G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~ 82 (105)
||+|+|. ..| ++++..+ |+||+++|.++||+-+++ +. .|.|| +|-+.+-..-.+
T Consensus 1 ~~~v~~~-~~~--~~~~~~~~~~tlL~a~~~~gi~~p~~--Cr-~G~Cg-~C~~~~~sG~v~ 55 (84)
T PRK10713 1 MARVTLR-ITG--TQLLCQDEHPSLLAALESHNVAVEYQ--CR-EGYCG-SCRTRLVAGQVD 55 (84)
T ss_pred CCEEEEE-eCC--cEEEecCCCCcHHHHHHHcCCCCCCC--CC-CeECC-CCEeEEEeCeEe
Confidence 8899873 445 5566664 599999999999964221 11 15575 999998554333
No 14
>PTZ00038 ferredoxin; Provisional
Probab=97.48 E-value=0.00032 Score=54.07 Aligned_cols=52 Identities=21% Similarity=0.353 Sum_probs=39.9
Q ss_pred eEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCcc
Q 036055 23 VHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQE 79 (105)
Q Consensus 23 ~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~e 79 (105)
-+|+|..++|. ++++++.|+||+++|.++||+.+ +-+.+ |.|| ||+|.|-+.
T Consensus 96 ~~Vt~~~~~g~-~~~~v~~geTILdAae~aGI~lp--~sCr~-G~CG-tCkvrV~~G 147 (191)
T PTZ00038 96 YNITLQTPDGE-KVIECDEDEYILDAAERQGVELP--YSCRG-GSCS-TCAAKLLEG 147 (191)
T ss_pred EEEEEEeCCCc-EEEEeCCCCcHHHHHHHcCCCCC--cCCCC-ccCC-CCEeEEeec
Confidence 45788778884 78999999999999999999532 22332 6675 999999655
No 15
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=97.41 E-value=0.00038 Score=53.56 Aligned_cols=47 Identities=30% Similarity=0.416 Sum_probs=34.9
Q ss_pred CCCEEEEEccccHHHHHHHHHCCCCCcccc---CCCccccccCceeEEeCccc
Q 036055 31 DGQKRPIIGLAVQTLLKALTNSGLIDPASH---RLEEIDACSVECEVNIAQEW 80 (105)
Q Consensus 31 DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~---~i~gi~~CGATCHVyVd~ew 80 (105)
||.. ++++.|+||+++|.++|+.-+..- .+..+|.|| +|.|-|+..+
T Consensus 9 dg~~--~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~-~C~V~v~g~~ 58 (234)
T PRK07569 9 DDQL--VSAREGETLLEAAREAGIPIPTLCHLDGLSDVGACR-LCLVEIEGSN 58 (234)
T ss_pred CCEE--EEeCCCCHHHHHHHHcCCCCCcCcCCCCCCCCCccC-CcEEEECCCC
Confidence 8866 999999999999999999532211 122246785 9999998754
No 16
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=97.34 E-value=0.00054 Score=51.53 Aligned_cols=55 Identities=15% Similarity=0.225 Sum_probs=43.0
Q ss_pred cceEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCcc
Q 036055 21 RIVHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQE 79 (105)
Q Consensus 21 ~M~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~e 79 (105)
++..|+|. -||.++++++.++.+|.+.+++.|+.+.-.+|-. |+|| .|-|.||..
T Consensus 5 ~~~~i~~~-vNG~~~~~~~~~~~~Ll~~LR~~gltgtK~GC~~--G~CG-ACtVlvdg~ 59 (159)
T PRK09908 5 ETITIECT-INGMPFQLHAAPGTPLSELLREQGLLSVKQGCCV--GECG-ACTVLVDGT 59 (159)
T ss_pred CceeEEEE-ECCEEEEEecCCCCcHHHHHHHcCCCCCCCCcCC--CCCC-CcEEEECCc
Confidence 34457654 7999999999999999999999998664433433 6786 899999864
No 17
>PRK05713 hypothetical protein; Provisional
Probab=97.20 E-value=0.0005 Score=54.21 Aligned_cols=49 Identities=27% Similarity=0.296 Sum_probs=35.6
Q ss_pred ceEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCcc
Q 036055 22 IVHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQE 79 (105)
Q Consensus 22 M~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~e 79 (105)
||+|+ .+| ++|++..|+||+++|.++||+-+ +.+.. |.|| ||+|.|-+.
T Consensus 1 ~~~~~---~~~--~~~~~~~g~tlL~a~~~~gi~~~--~~C~~-G~Cg-~C~~~~~~G 49 (312)
T PRK05713 1 MPELR---VGE--RRWSVPAGSNLLDALNAAGVAVP--YSCRA-GSCH-ACLVRCLQG 49 (312)
T ss_pred CCcEe---cCC--eEEEECCCCcHHHHHHHcCCCCC--cCCCC-cCCC-CCeEEEEeC
Confidence 66665 455 56888999999999999999532 22221 5675 999999543
No 18
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.07 E-value=0.0013 Score=43.53 Aligned_cols=55 Identities=29% Similarity=0.417 Sum_probs=32.1
Q ss_pred CcceEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccc-------cCCCccccccCceeEEeCccc
Q 036055 20 YRIVHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPAS-------HRLEEIDACSVECEVNIAQEW 80 (105)
Q Consensus 20 ~~M~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~-------~~i~gi~~CGATCHVyVd~ew 80 (105)
|++++|+| || +.+++..|+||++++..+|+.-+.. ..+-.++.|+ +|=|-|+.+.
T Consensus 1 ~~~v~i~i---dG--~~v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~-~C~Vev~g~~ 62 (82)
T PF13510_consen 1 DKMVTITI---DG--KPVEVPPGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCR-LCLVEVDGEP 62 (82)
T ss_dssp -EEEEEEE---TT--EEEEEEET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-S-S-EEEESSEE
T ss_pred CCEEEEEE---CC--EEEEEcCCCHHHHHHHHCCCeEEEeeeccCcccccCCccccc-eEEEEECCCc
Confidence 34555554 68 5577889999999999999953210 1112235674 9999998654
No 19
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=96.99 E-value=0.0016 Score=52.12 Aligned_cols=53 Identities=17% Similarity=0.133 Sum_probs=40.2
Q ss_pred EEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccc
Q 036055 24 HLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEW 80 (105)
Q Consensus 24 ~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew 80 (105)
+|++...+|....+++..|+||+++|.++|+..+. .+. .|.|| ||.|.|-...
T Consensus 4 ~v~~~~~~~~~~~~~~~~g~tlL~a~~~~g~~~p~--~C~-~G~Cg-~C~~~~~~G~ 56 (340)
T PRK11872 4 KVALSFADGKTLFFPVGKDELLLDAALRNGINLPL--DCR-EGVCG-TCQGRCESGI 56 (340)
T ss_pred EEEEEecCCcEEEEEeCCCCcHHHHHHHcCCCCcC--CCC-CeECC-CCEEEEEeCc
Confidence 56665588999889999999999999999996422 222 26685 9999985544
No 20
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=96.67 E-value=0.0036 Score=49.48 Aligned_cols=53 Identities=21% Similarity=0.353 Sum_probs=37.4
Q ss_pred eEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccc
Q 036055 23 VHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLD 82 (105)
Q Consensus 23 ~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~ 82 (105)
.+|+|. +.| +++++..|+||+++|.++||+-+ +.+. .|.|| +|.|.|-+.-.+
T Consensus 3 ~~v~~~-~~~--~~~~~~~g~tlL~a~~~~gi~~~--~~C~-~G~Cg-~C~~~~~~G~~~ 55 (339)
T PRK07609 3 FQVTLQ-PSG--RQFTAEPDETILDAALRQGIHLP--YGCK-NGACG-SCKGRLLEGEVE 55 (339)
T ss_pred EEEEEe-cCC--eEEEeCCCCcHHHHHHHcCCCCC--CCCC-CeECC-CCEEEEEECcEe
Confidence 367775 334 67889999999999999999532 2222 25675 999998655443
No 21
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=96.36 E-value=0.0063 Score=54.37 Aligned_cols=50 Identities=24% Similarity=0.369 Sum_probs=35.9
Q ss_pred ceEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCcccc---CCCccccccCceeEEeC
Q 036055 22 IVHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASH---RLEEIDACSVECEVNIA 77 (105)
Q Consensus 22 M~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~---~i~gi~~CGATCHVyVd 77 (105)
|++|++ ||.. +++..|+||+++|.++||.-+..= .+..+|.|+ +|.|.|.
T Consensus 1 ~~~i~i---dg~~--~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~-~C~v~v~ 53 (847)
T PRK08166 1 MATIHV---DGKE--YEVNGADNLLEACLSLGIDIPYFCWHPALGSVGACR-QCAVKQY 53 (847)
T ss_pred CeEEEE---CCEE--EEeCCCCHHHHHHHHcCCCCCccccCCCCCCCCccC-CCeEEEe
Confidence 677776 7865 777899999999999998432111 122347785 9999993
No 22
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=96.33 E-value=0.0059 Score=45.44 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=37.5
Q ss_pred CCCCCEEEEEccccHHHHHHHHHC-CCCCccccCCCccccccCceeEEeCcc
Q 036055 29 DPDGQKRPIIGLAVQTLLKALTNS-GLIDPASHRLEEIDACSVECEVNIAQE 79 (105)
Q Consensus 29 d~DG~~~~V~a~~G~SLMeaa~~n-Gv~g~~~~~i~gi~~CGATCHVyVd~e 79 (105)
.-||..++++++++.+|++.+++. |+.+...+|-. |.|| .|-|.||..
T Consensus 5 ~vNG~~~~~~~~~~~~Ll~~LR~~lgltg~K~gC~~--G~CG-ACtVlvdg~ 53 (148)
T TIGR03193 5 TVNGRWREDAVADNMLLVDYLRDTVGLTGTKQGCDG--GECG-ACTVLVDGR 53 (148)
T ss_pred EECCEEEEeecCCCCcHHHHHHHhcCCCCCCCCCCC--CCCC-CCEEEECCe
Confidence 368999999999999999999985 77554333333 6786 899999864
No 23
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=96.23 E-value=0.016 Score=46.02 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=38.1
Q ss_pred ceEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccc
Q 036055 22 IVHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLD 82 (105)
Q Consensus 22 M~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~ 82 (105)
-.+|++.+ ..+++.+..|+||+++|.++||+-+ +. +. .|.|| +|-|-|-+....
T Consensus 248 ~~~v~~~~---~~~~~~~~~~~~lL~~~~~~gi~~~-~~-C~-~G~Cg-~C~~~~~~G~v~ 301 (332)
T PRK10684 248 GLTFTKLQ---PAREFYAPVGTTLLEALESNKVPVV-AA-CR-AGVCG-CCKTKVVSGEYT 301 (332)
T ss_pred ceEEEEec---CCEEEEeCCCChHHHHHHHcCCCcc-CC-CC-CcCCC-CCEEEEecCccc
Confidence 44677765 3367788899999999999999532 11 22 26685 999999765554
No 24
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=96.13 E-value=0.016 Score=45.54 Aligned_cols=55 Identities=20% Similarity=0.215 Sum_probs=40.5
Q ss_pred ceEEEEECCCCCEEEEEccccHHHHHHHHHC-CCCCccccCCCccccccCceeEEeCccc
Q 036055 22 IVHLFAIDPDGQKRPIIGLAVQTLLKALTNS-GLIDPASHRLEEIDACSVECEVNIAQEW 80 (105)
Q Consensus 22 M~~Itfid~DG~~~~V~a~~G~SLMeaa~~n-Gv~g~~~~~i~gi~~CGATCHVyVd~ew 80 (105)
+.+|+|. -||..+++++..+.||.+++++. |+.|.-.+|-. |.|| .|-|.||...
T Consensus 49 ~~~i~~~-VNG~~~~~~v~~~~tLLd~LR~~l~ltGtK~GC~~--G~CG-ACTVlVdG~~ 104 (217)
T PRK11433 49 ISPVTLK-VNGKTEQLEVDTRTTLLDALREHLHLTGTKKGCDH--GQCG-ACTVLVNGRR 104 (217)
T ss_pred CceEEEE-ECCEEEEEecCCCCcHHHHHHHhcCCCCCCCCCCC--CCcC-ceEEEECCEE
Confidence 3457655 89999999999999999999975 66443222222 6786 8999998643
No 25
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=95.67 E-value=0.016 Score=51.21 Aligned_cols=69 Identities=17% Similarity=0.303 Sum_probs=48.2
Q ss_pred ceEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccccCCCCChHHHHHHHhh
Q 036055 22 IVHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLDRLPPRSYEEEYVLKRI 98 (105)
Q Consensus 22 M~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~klp~~~e~E~dMLd~~ 98 (105)
||-|||. |.|.+-+ .+|.+++++|+++|+- .+.-+.|-+.|| -|.|.|-+.- .++-..++-|...-+.-
T Consensus 1 ~p~v~f~-psgkr~~---~~g~~il~aar~~gv~--i~s~cggk~~cg-kc~v~v~~g~-~~i~s~~dh~k~~~~~g 69 (614)
T COG3894 1 MPLVTFM-PSGKRGE---DEGTTILDAARRLGVY--IRSVCGGKGTCG-KCQVVVQEGN-HKIVSSTDHEKYLRERG 69 (614)
T ss_pred CceeEee-cCCCcCC---CCCchHHHHHHhhCce--EeeecCCCcccc-ceEEEEEeCC-ceeccchhHHHHHHhhc
Confidence 7888887 8887765 8999999999999981 111233334464 8999998654 66666666666655543
No 26
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=95.49 E-value=0.03 Score=44.50 Aligned_cols=55 Identities=11% Similarity=0.137 Sum_probs=39.5
Q ss_pred ceEEEEECCCCCEEE-EEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCcccc
Q 036055 22 IVHLFAIDPDGQKRP-IIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWL 81 (105)
Q Consensus 22 M~~Itfid~DG~~~~-V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~ 81 (105)
.-+|+|. .+|.... +.+..|+||+++|.++||+- .+-+.. |.|| +|.|.|-+.-.
T Consensus 262 ~~~v~~~-~~~~~~~~~~~~~~~slL~~~~~~gi~~--~~~C~~-G~Cg-~C~~~~~~G~v 317 (352)
T TIGR02160 262 VSKVTVT-LDGRSTETSSLSRDESVLDAALRARPDL--PFACKG-GVCG-TCRAKVLEGKV 317 (352)
T ss_pred ceEEEEE-ECCceEEEEecCCCCcHHHHHHHcCCCC--cCCCCC-ccCC-CCEEEEecccc
Confidence 3457665 5777665 78999999999999999953 222332 6686 99999966443
No 27
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=95.26 E-value=0.038 Score=41.07 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=37.8
Q ss_pred CCCCCEEEEEccccHHHHHHHHHC-CCCCccccCCCccccccCceeEEeCcc
Q 036055 29 DPDGQKRPIIGLAVQTLLKALTNS-GLIDPASHRLEEIDACSVECEVNIAQE 79 (105)
Q Consensus 29 d~DG~~~~V~a~~G~SLMeaa~~n-Gv~g~~~~~i~gi~~CGATCHVyVd~e 79 (105)
.-||..+++++.++.+|++.+++. |+.+.-.+|-. |.|| .|-|.||..
T Consensus 7 ~vNG~~~~~~~~~~~~Ll~~LR~~~~ltgtK~gC~~--G~CG-ACtVlvdG~ 55 (151)
T TIGR03198 7 TVNGQAWEVAAVPTTRLSDLLRKELQLTGTKVSCGI--GRCG-ACSVLIDGK 55 (151)
T ss_pred EECCEEEEeecCCCcHHHHHHHhccCCCCCCCCCCC--CcCC-ccEEEECCc
Confidence 368999999999999999999985 87654333333 6786 899999864
No 28
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=94.75 E-value=0.055 Score=49.92 Aligned_cols=52 Identities=10% Similarity=0.044 Sum_probs=40.3
Q ss_pred EEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCcc
Q 036055 25 LFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQE 79 (105)
Q Consensus 25 Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~e 79 (105)
|+|. -||..+++++..+.+|.+.+++.|+.+.-.+++. .|.|| .|-|.||..
T Consensus 3 i~~~-vNg~~~~~~~~~~~~l~~~LR~~~~~~~k~g~c~-~g~CG-aCtv~~dg~ 54 (956)
T PRK09800 3 IHFT-LNGAPQELTVNPGENVQKLLFNMGMHSVRNSDDG-FGFAG-SDAIIFNGN 54 (956)
T ss_pred EEEE-ECCEEEEEecCCCCCHHHHHHHCCCCccccCCCC-cccCC-CCEEEECCe
Confidence 5543 7899999999999999999999888654333222 37786 999999863
No 29
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=94.50 E-value=0.073 Score=46.47 Aligned_cols=55 Identities=22% Similarity=0.375 Sum_probs=37.4
Q ss_pred ceEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCc---cccCCCccccccCceeEEeCccc
Q 036055 22 IVHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDP---ASHRLEEIDACSVECEVNIAQEW 80 (105)
Q Consensus 22 M~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~---~~~~i~gi~~CGATCHVyVd~ew 80 (105)
|..|+| .-|| ++++++.|+||+++|..+|+.-+ +...+..+|.|+ .|=|-|+..+
T Consensus 1 ~~~v~~-~idg--~~~~~~~g~ti~~a~~~~g~~ip~~c~~~~~~~~g~C~-~C~V~v~g~~ 58 (652)
T PRK12814 1 MNTISL-TING--RSVTAAPGTSILEAAASAGITIPTLCFHQELEATGSCW-MCIVEIKGKN 58 (652)
T ss_pred CCeEEE-EECC--EEEEeCCcCcHHHHHHHcCCccccccCCCCCCCccccc-eeEEEECCCc
Confidence 444443 4678 47788899999999999998311 111223357785 9999998754
No 30
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=94.40 E-value=0.09 Score=46.60 Aligned_cols=51 Identities=31% Similarity=0.394 Sum_probs=36.5
Q ss_pred ceEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCcc---ccCCCccccccCceeEEeCc
Q 036055 22 IVHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPA---SHRLEEIDACSVECEVNIAQ 78 (105)
Q Consensus 22 M~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~---~~~i~gi~~CGATCHVyVd~ 78 (105)
|++|++ || ++|+++.|.||+|+|..+||.-+. --.+...|.|. .|=|-|+.
T Consensus 1 m~~~~I---dg--~~v~v~~g~til~a~~~~gi~IP~lCy~~~l~~~g~Cr-~ClVev~~ 54 (687)
T PRK09130 1 MVKLKV---DG--KEIEVPDGYTLLQACEAAGAEIPRFCYHERLSIAGNCR-MCLVEVKG 54 (687)
T ss_pred CeEEEE---CC--EEEEeCCCCHHHHHHHHcCCCcCcccCCCCCCCCCCCC-CCEEEECC
Confidence 667765 78 678899999999999999994210 00122236785 99999974
No 31
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=94.05 E-value=0.068 Score=45.51 Aligned_cols=44 Identities=25% Similarity=0.381 Sum_probs=36.7
Q ss_pred CCCCEEEE-EccccHHHHHHHHHC-CCCCccccCCCccccccCceeEEe
Q 036055 30 PDGQKRPI-IGLAVQTLLKALTNS-GLIDPASHRLEEIDACSVECEVNI 76 (105)
Q Consensus 30 ~DG~~~~V-~a~~G~SLMeaa~~n-Gv~g~~~~~i~gi~~CGATCHVyV 76 (105)
-||+.+++ ++.++.+|.+.+++. |+.|.-.+|-. |+|| .|-|.|
T Consensus 5 ~Ng~~~~~~~~~~~~~ll~~lR~~~~l~g~k~gC~~--G~CG-aCtv~~ 50 (467)
T TIGR02963 5 LNGETVTLSDVDPTRTLLDYLREDAGLTGTKEGCAE--GDCG-ACTVVV 50 (467)
T ss_pred ECCEEEEeecCCCCCCHHHHHHHhcCCCCCCcccCC--CCCC-ceEEEE
Confidence 58999999 799999999999985 88765555555 7887 899999
No 32
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=94.00 E-value=0.12 Score=46.60 Aligned_cols=52 Identities=29% Similarity=0.411 Sum_probs=35.4
Q ss_pred ceEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCcccc---CCCccccccCceeEEeCcc
Q 036055 22 IVHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASH---RLEEIDACSVECEVNIAQE 79 (105)
Q Consensus 22 M~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~---~i~gi~~CGATCHVyVd~e 79 (105)
|.+|++ || .+|++..|.||+|||.++||.=+.-= .+...|+|. -|=|.|+..
T Consensus 1 m~tI~I---DG--~ei~v~~g~tvLqAa~~aGi~IP~fCyh~~ls~~GaCR-mClVEveg~ 55 (693)
T COG1034 1 MVTITI---DG--KEIEVPEGETVLQAAREAGIDIPTFCYHPRLSIAGACR-MCLVEVEGA 55 (693)
T ss_pred CeEEEE---CC--EEEecCCCcHHHHHHHHcCCCCCcccccCCCCccccee-EEEEEecCC
Confidence 556543 68 67888999999999999999411000 122226674 899999874
No 33
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=93.97 E-value=0.13 Score=46.18 Aligned_cols=53 Identities=23% Similarity=0.359 Sum_probs=37.7
Q ss_pred cceEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCc-cc--cCCCccccccCceeEEeCcc
Q 036055 21 RIVHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDP-AS--HRLEEIDACSVECEVNIAQE 79 (105)
Q Consensus 21 ~M~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~-~~--~~i~gi~~CGATCHVyVd~e 79 (105)
+|++|++ || ++|+++.|+||+++|..+||.-+ .- -.+..+|.|. -|=|-|+..
T Consensus 3 ~~v~~~i---dg--~~~~~~~g~til~aa~~~gi~ip~~C~~~~l~~~g~Cr-~C~Vev~g~ 58 (797)
T PRK07860 3 DLVTLTI---DG--VEVSVPKGTLVIRAAELLGIQIPRFCDHPLLDPVGACR-QCLVEVEGQ 58 (797)
T ss_pred ceEEEEE---CC--EEEEeCCCChHHHHHHHcCCCCCeecCCCCCCCCcccC-ccEEEECCC
Confidence 5777765 78 67888999999999999998311 00 0222346785 899999754
No 34
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=93.91 E-value=0.14 Score=46.81 Aligned_cols=53 Identities=15% Similarity=0.240 Sum_probs=35.5
Q ss_pred ceEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCc---cccCCCccccccCceeEEeCccc
Q 036055 22 IVHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDP---ASHRLEEIDACSVECEVNIAQEW 80 (105)
Q Consensus 22 M~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~---~~~~i~gi~~CGATCHVyVd~ew 80 (105)
|++|+ -|| ++|+++.|+||+++|+++||.-+ +...+...|.|+ .|=|-|+..+
T Consensus 1 mv~i~---IdG--~~v~~~~G~til~aa~~~gi~iP~lC~~~~~~~~G~Cr-~C~VeV~G~~ 56 (819)
T PRK08493 1 MITIT---ING--KECEAQEGEYILNVARRNGIFIPAICYLSGCSPTLACR-LCMVEADGKR 56 (819)
T ss_pred CeEEE---ECC--EEEEeCCCCHHHHHHHHcCCccccccccCCCCCCcccc-ceEEEECCEE
Confidence 44444 478 55778899999999999999421 001122246785 8999988654
No 35
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=93.90 E-value=0.079 Score=48.83 Aligned_cols=48 Identities=8% Similarity=0.001 Sum_probs=37.1
Q ss_pred CCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCcc
Q 036055 30 PDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQE 79 (105)
Q Consensus 30 ~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~e 79 (105)
-||..+++++..+.+|.+.+++.|+.+.-.+.+ +.|.|| .|-|.||..
T Consensus 3 ~Ng~~~~~~~~~~~~l~~~LR~~~l~~~k~~~c-~~g~CG-aCtv~~dg~ 50 (951)
T TIGR03313 3 LNGAPQTLECKLGENVQTLLFNMGMHSVRNSDD-GFGFAG-SDAILFNGV 50 (951)
T ss_pred ECCEEEEEecCCCCCHHHHHHHCCCCCCcCCCC-CcccCC-CCEEEECCe
Confidence 489999999999999999999998854222112 236786 899999864
No 36
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=93.69 E-value=0.2 Score=37.77 Aligned_cols=47 Identities=21% Similarity=0.305 Sum_probs=35.6
Q ss_pred CCCCEEEEEccccHHHHHHHHHC-CCCCccccCCCccccccCceeEEeCcc
Q 036055 30 PDGQKRPIIGLAVQTLLKALTNS-GLIDPASHRLEEIDACSVECEVNIAQE 79 (105)
Q Consensus 30 ~DG~~~~V~a~~G~SLMeaa~~n-Gv~g~~~~~i~gi~~CGATCHVyVd~e 79 (105)
-||..++|++.++.+|..++++. |+.|.-.+| +++.|| .|=|+||-+
T Consensus 8 vNG~~~~~~~~p~~~Ll~~LRd~l~ltgtk~GC--~~g~CG-ACtVlvDG~ 55 (156)
T COG2080 8 VNGEPVELDVDPRTPLLDVLRDELGLTGTKKGC--GHGQCG-ACTVLVDGE 55 (156)
T ss_pred ECCeEEEEEeCCCChHHHHHHHhcCCCCcCCCC--CCccCC-ceEEEECCe
Confidence 68999999999999999999965 554422222 236675 899999964
No 37
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=93.52 E-value=0.21 Score=41.13 Aligned_cols=47 Identities=23% Similarity=0.348 Sum_probs=32.6
Q ss_pred CCCEEEEEc-cccHHHHHHHHHCCCCCc-c--ccCCCccccccCceeEEeCccc
Q 036055 31 DGQKRPIIG-LAVQTLLKALTNSGLIDP-A--SHRLEEIDACSVECEVNIAQEW 80 (105)
Q Consensus 31 DG~~~~V~a-~~G~SLMeaa~~nGv~g~-~--~~~i~gi~~CGATCHVyVd~ew 80 (105)
|| ++|++ +.|+||+++|+++||.-+ + .-.+...|.|. .|=|-|+..+
T Consensus 74 DG--k~VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CR-lClVEVeG~~ 124 (297)
T PTZ00305 74 NK--RPVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCR-MCLVQVDGTQ 124 (297)
T ss_pred CC--EEEEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccc-eeEEEECCCc
Confidence 88 67888 889999999999999311 0 00122236685 8999997543
No 38
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=92.77 E-value=0.19 Score=43.26 Aligned_cols=47 Identities=23% Similarity=0.335 Sum_probs=33.4
Q ss_pred CCCEEEEEccccHHHHHHHHHCCCCCcc---ccCCCccccccCceeEEeCccc
Q 036055 31 DGQKRPIIGLAVQTLLKALTNSGLIDPA---SHRLEEIDACSVECEVNIAQEW 80 (105)
Q Consensus 31 DG~~~~V~a~~G~SLMeaa~~nGv~g~~---~~~i~gi~~CGATCHVyVd~ew 80 (105)
|| ++|+++.|+||+++|.++||.-+. .-.+..+|.|. .|-|-|+..+
T Consensus 4 dg--~~~~~~~g~~il~a~~~~gi~ip~~C~~~~l~~~g~Cr-~C~v~v~g~~ 53 (603)
T TIGR01973 4 DG--KELEVPKGTTVLQACLSAGIEIPRFCYHEKLSIAGNCR-MCLVEVEKFP 53 (603)
T ss_pred CC--EEEEeCCCCHHHHHHHHcCCCccccCCCCCCCCCCccc-cCEEEECCCC
Confidence 56 678899999999999999984210 00122246784 9999998654
No 39
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=92.70 E-value=0.15 Score=48.59 Aligned_cols=52 Identities=21% Similarity=0.191 Sum_probs=40.5
Q ss_pred eEEEEECCCCCEE-EEEccccHHHHHHHHHC-CCCCccccCCCccccccCceeEEeCc
Q 036055 23 VHLFAIDPDGQKR-PIIGLAVQTLLKALTNS-GLIDPASHRLEEIDACSVECEVNIAQ 78 (105)
Q Consensus 23 ~~Itfid~DG~~~-~V~a~~G~SLMeaa~~n-Gv~g~~~~~i~gi~~CGATCHVyVd~ 78 (105)
|.|+|. -||+.+ .+++.++.+|++.+++. |+.|.-.+|-. |+|| .|-|.||.
T Consensus 1 ~~~~~~-~Ng~~~~~~~~~~~~~ll~~LR~~~~l~gtk~gC~~--G~CG-aCtV~~~~ 54 (1330)
T TIGR02969 1 PELLFY-VNGRKVVEKNVDPETMLLPYLRKKLRLTGTKYGCGG--GGCG-ACTVMISR 54 (1330)
T ss_pred CcEEEE-ECCEEEEeccCCCCCcHHHHHHhhcCCCCCCCCcCC--CCCC-CcEEEECC
Confidence 346654 689886 56899999999999985 88775555555 7897 89999983
No 40
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=92.42 E-value=0.34 Score=37.25 Aligned_cols=45 Identities=16% Similarity=0.049 Sum_probs=31.2
Q ss_pred CEEEEEcc-ccHHHHHHHHHCC-C-CCcccc--CCCccccccCceeEEeCcc
Q 036055 33 QKRPIIGL-AVQTLLKALTNSG-L-IDPASH--RLEEIDACSVECEVNIAQE 79 (105)
Q Consensus 33 ~~~~V~a~-~G~SLMeaa~~nG-v-~g~~~~--~i~gi~~CGATCHVyVd~e 79 (105)
..++|++. .|.||++++...+ . +..+.. .+ .+|.|| +|.|.|+..
T Consensus 18 ~~~~v~~~~~~~tvl~~L~~~~~~~~~~l~~~~~c-~~g~Cg-~C~v~vnG~ 67 (232)
T PRK05950 18 QTYEVDVDECGPMVLDALIKIKNEIDPTLTFRRSC-REGVCG-SDAMNINGK 67 (232)
T ss_pred EEEEeCCCCCCCHHHHHHHHhCCccCCcceeeCCC-CCCCCC-CCEEEECCc
Confidence 45788888 9999999999987 2 111111 12 226686 999999864
No 41
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=92.28 E-value=0.37 Score=44.76 Aligned_cols=54 Identities=28% Similarity=0.426 Sum_probs=37.3
Q ss_pred CcceEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCc---cccCCCccccccCceeEEeCcc
Q 036055 20 YRIVHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDP---ASHRLEEIDACSVECEVNIAQE 79 (105)
Q Consensus 20 ~~M~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~---~~~~i~gi~~CGATCHVyVd~e 79 (105)
.+|.+|++ || +.+++.+|+|+|++|.+|||.-+ +.-.++-|+.| -||=|-||-.
T Consensus 3 ~~~i~vti---dg--~~~~v~~G~tiL~a~~~~gI~iP~iCy~~~l~pi~sC-d~ClVEidG~ 59 (978)
T COG3383 3 EKMITVTI---DG--RSIEVEEGTTILRAANRNGIEIPHICYHESLGPIGSC-DTCLVEIDGK 59 (978)
T ss_pred ceeEEEEE---CC--eEEecCCChHHHHHHHhcCCcccceeccCCCCccccc-ceEEEEecCc
Confidence 45666554 67 56788999999999999999311 11123334668 5999998864
No 42
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=91.93 E-value=0.39 Score=42.61 Aligned_cols=53 Identities=19% Similarity=0.335 Sum_probs=35.1
Q ss_pred ceEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCcc---ccCCCccccccCceeEEeCccc
Q 036055 22 IVHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPA---SHRLEEIDACSVECEVNIAQEW 80 (105)
Q Consensus 22 M~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~---~~~i~gi~~CGATCHVyVd~ew 80 (105)
|++|+ -|| ++|+++.|+||+++|..+||.-+. ...+...+.|. -|=|-|+..+
T Consensus 1 m~~~~---idg--~~~~~~~g~~il~a~~~~g~~ip~~c~~~~~~~~~~C~-~C~v~v~~~~ 56 (776)
T PRK09129 1 MVEIE---IDG--KKVEVPEGSMVIEAADKAGIYIPRFCYHKKLSIAANCR-MCLVEVEKAP 56 (776)
T ss_pred CeEEE---ECC--EEEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCCCcc-eeEEEECCCC
Confidence 54554 368 567779999999999999984210 00111135684 9999998543
No 43
>PLN00192 aldehyde oxidase
Probab=88.07 E-value=0.61 Score=44.61 Aligned_cols=49 Identities=20% Similarity=0.220 Sum_probs=39.9
Q ss_pred EEEECCCCCEEEE-EccccHHHHHHHHHC-CCCCccccCCCccccccCceeEEeC
Q 036055 25 LFAIDPDGQKRPI-IGLAVQTLLKALTNS-GLIDPASHRLEEIDACSVECEVNIA 77 (105)
Q Consensus 25 Itfid~DG~~~~V-~a~~G~SLMeaa~~n-Gv~g~~~~~i~gi~~CGATCHVyVd 77 (105)
|+|. -||+++++ ++.+..+|.+.+++. |+.|.-.+|-+ |+|| .|-|.|+
T Consensus 6 i~~~-vNg~~~~~~~~~p~~~Ll~~LR~~~~ltgtK~gC~~--G~CG-aCtV~v~ 56 (1344)
T PLN00192 6 LVFA-VNGERFELSSVDPSTTLLEFLRTQTPFKSVKLGCGE--GGCG-ACVVLLS 56 (1344)
T ss_pred EEEE-ECCEEEEeccCCCCCcHHHHHHHhhCCCCcCCCCCC--CcCC-CcEEEEe
Confidence 5443 68999999 699999999999986 88776666666 7897 8999995
No 44
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=88.07 E-value=0.6 Score=42.59 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=33.5
Q ss_pred CCCCEEEEEccccHHHHHHHHHC-CCCCccccCCCccccccCceeEEeCcc
Q 036055 30 PDGQKRPIIGLAVQTLLKALTNS-GLIDPASHRLEEIDACSVECEVNIAQE 79 (105)
Q Consensus 30 ~DG~~~~V~a~~G~SLMeaa~~n-Gv~g~~~~~i~gi~~CGATCHVyVd~e 79 (105)
-||. ++++..+.+|.+.+++. |+.+.-.+|-. |.|| .|-|.||..
T Consensus 5 ~ng~--~~~~~~~~~l~~~lr~~~~~~~~k~gc~~--g~cg-actv~~dg~ 50 (848)
T TIGR03311 5 VNGR--EVDVNEEKKLLEFLREDLRLTGVKNGCGE--GACG-ACTVIVNGK 50 (848)
T ss_pred ECCE--EeeCCCCCcHHHHHHHhcCCCcCCCCCCC--CCCC-CcEEEECCe
Confidence 4674 67888999999999975 87554334443 6786 899999864
No 45
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=87.48 E-value=1 Score=38.04 Aligned_cols=58 Identities=22% Similarity=0.224 Sum_probs=40.5
Q ss_pred EEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccccCC
Q 036055 25 LFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLDRLP 85 (105)
Q Consensus 25 Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~klp 85 (105)
||+---+-.+++..+..|.+|+.++..+||.- +..+.|-|.| +.|.|.|-..--+.||
T Consensus 37 ~ti~IN~d~e~~~t~~aG~kLL~~L~~~gifi--~SaCGGggsC-~QCkv~v~~ggge~Lp 94 (410)
T COG2871 37 ITIKINGDPEKTKTVPAGGKLLGALASSGIFI--SSACGGGGSC-GQCKVRVKKGGGEILP 94 (410)
T ss_pred eEEEeCCChhhceecCCchhHHHHHHhCCccc--ccCCCCCccc-cccEEEEecCCCccCc
Confidence 44444455688899999999999999999942 2223332445 4999999876555554
No 46
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=84.72 E-value=1.3 Score=37.09 Aligned_cols=44 Identities=20% Similarity=0.226 Sum_probs=28.6
Q ss_pred EEEEEccccHHHHHHHHHCCCC---C-ccccCCCccccccCceeEEeCcc
Q 036055 34 KRPIIGLAVQTLLKALTNSGLI---D-PASHRLEEIDACSVECEVNIAQE 79 (105)
Q Consensus 34 ~~~V~a~~G~SLMeaa~~nGv~---g-~~~~~i~gi~~CGATCHVyVd~e 79 (105)
..+|+++.|+||++++.+.+.. + .+.+.+. .|.|| +|-|.|+..
T Consensus 22 ~~~v~~~~~~tvl~al~~~~~~~~~~l~~~~~C~-~g~Cg-~C~v~v~G~ 69 (486)
T PRK06259 22 SYEVPVKEGMTVLDALEYINKTYDANIAFRSSCR-AGQCG-SCAVTINGE 69 (486)
T ss_pred EEEEeCCCCChHHHHHHHhchhcCCCceecCCCC-CCCCC-CCEEEECCe
Confidence 4567778999999999964431 1 1122222 36686 999998754
No 47
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=84.52 E-value=1.3 Score=29.08 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=25.6
Q ss_pred EEEECCCCCEEEEEccccHHHHHHH----HHCCC
Q 036055 25 LFAIDPDGQKRPIIGLAVQTLLKAL----TNSGL 54 (105)
Q Consensus 25 Itfid~DG~~~~V~a~~G~SLMeaa----~~nGv 54 (105)
+++.-|||.+..|.+.+|.|+.+++ ...|+
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l 35 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGL 35 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCC
Confidence 5678899999999999999988766 56676
No 48
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=84.52 E-value=1.8 Score=35.15 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=31.8
Q ss_pred CEEEEEccccHHHHHHHHHCCCCC--ccccC--CCccccccCceeEEeCcc
Q 036055 33 QKRPIIGLAVQTLLKALTNSGLID--PASHR--LEEIDACSVECEVNIAQE 79 (105)
Q Consensus 33 ~~~~V~a~~G~SLMeaa~~nGv~g--~~~~~--i~gi~~CGATCHVyVd~e 79 (105)
..++|++..|.||++++...++.. .+.++ +. .+.|| +|=|.|+-.
T Consensus 19 ~~~~v~~~~~~tvL~~l~~i~~~~d~tL~~~~~c~-~~~Cg-~C~v~inG~ 67 (329)
T PRK12577 19 QTYTLEVEPGNTILDCLNRIKWEQDGSLAFRKNCR-NTICG-SCAMRINGR 67 (329)
T ss_pred EEEEEECCCCChHHHHHHHhCCcCCCCcEEcCCCC-CCCCC-CCEEEECCe
Confidence 457899999999999999998732 22222 32 25686 888888753
No 49
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=83.34 E-value=3.4 Score=32.80 Aligned_cols=44 Identities=11% Similarity=0.130 Sum_probs=28.5
Q ss_pred CEEEEEccccHHHHHHHHHCCCC--Ccc---ccCCCccccccCceeEEeCcc
Q 036055 33 QKRPIIGLAVQTLLKALTNSGLI--DPA---SHRLEEIDACSVECEVNIAQE 79 (105)
Q Consensus 33 ~~~~V~a~~G~SLMeaa~~nGv~--g~~---~~~i~gi~~CGATCHVyVd~e 79 (105)
..++|++..|.||+++++.-+.. ..+ .+|-. |.|| +|=|.|+..
T Consensus 20 q~y~v~~~~~~tvLd~L~~i~~~~d~~l~~r~~C~~--g~CG-sCa~~InG~ 68 (251)
T PRK12386 20 QDYTVEVNEGEVVLDVIHRLQATQAPDLAVRWNCKA--GKCG-SCSAEINGR 68 (251)
T ss_pred EEEEEeCCCCCCHHHHHHHhccccCCCCcccCCCCC--CcCC-CCEEEECcc
Confidence 56889999999999999884431 111 11111 4465 888888753
No 50
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=80.49 E-value=4.7 Score=35.15 Aligned_cols=54 Identities=19% Similarity=0.154 Sum_probs=43.7
Q ss_pred cceEEEEECCCCCEEEEEccccHHHHHHHH-HCCCCCccccCCCccccccCceeEEeC
Q 036055 21 RIVHLFAIDPDGQKRPIIGLAVQTLLKALT-NSGLIDPASHRLEEIDACSVECEVNIA 77 (105)
Q Consensus 21 ~M~~Itfid~DG~~~~V~a~~G~SLMeaa~-~nGv~g~~~~~i~gi~~CGATCHVyVd 77 (105)
+|-.|.|+-.+-.+..-++.+-.||++-++ +.++.|.-++|-+ |+|| -|-|.|-
T Consensus 5 ~~~~irf~lN~~~~~l~~v~P~~TlLd~LR~d~~ltGtKEGCAE--GDCG-ACTVlVg 59 (493)
T COG4630 5 RRNTIRFLLNGETRVLSDVPPTTTLLDYLRLDRRLTGTKEGCAE--GDCG-ACTVLVG 59 (493)
T ss_pred ccceeEEEecCceEEeecCCcchHHHHHHHHhcccccccccccC--CCcC-ceEEEEE
Confidence 366799997666666777899999999997 8899887777777 7897 6888775
No 51
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=80.24 E-value=2.5 Score=28.26 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=23.8
Q ss_pred EECCCCCEEEEEccccHHHHHHH----HHCCCC
Q 036055 27 AIDPDGQKRPIIGLAVQTLLKAL----TNSGLI 55 (105)
Q Consensus 27 fid~DG~~~~V~a~~G~SLMeaa----~~nGv~ 55 (105)
++-|||++..|.+.+|.||.+++ ...|+.
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~ 36 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRGIN 36 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCC
Confidence 56799999999999999987765 556763
No 52
>smart00455 RBD Raf-like Ras-binding domain.
Probab=79.01 E-value=3.3 Score=26.72 Aligned_cols=30 Identities=27% Similarity=0.218 Sum_probs=25.4
Q ss_pred EEEECCCCCEEEEEccccHHHHHHH----HHCCC
Q 036055 25 LFAIDPDGQKRPIIGLAVQTLLKAL----TNSGL 54 (105)
Q Consensus 25 Itfid~DG~~~~V~a~~G~SLMeaa----~~nGv 54 (105)
+.+.-|||.+..|.+++|.||.|++ ...|+
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l 35 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGL 35 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCC
Confidence 4567899999999999999998876 56677
No 53
>COG0014 ProA Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism]
Probab=78.68 E-value=3.8 Score=35.32 Aligned_cols=42 Identities=14% Similarity=0.298 Sum_probs=28.7
Q ss_pred CCCCEEEEEccccHHHHHHHHHCCCCCccccCCCcc-ccccCceeEEeCcc
Q 036055 30 PDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEI-DACSVECEVNIAQE 79 (105)
Q Consensus 30 ~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi-~~CGATCHVyVd~e 79 (105)
.||-.-.|--.=|.+|.+..++|-- ++-| .++| -||+|||+.
T Consensus 193 l~~yiD~iIPRGg~~Li~~v~~~a~-------vPVi~~~~G-~CHiyvd~~ 235 (417)
T COG0014 193 LDGYIDLVIPRGGAGLIRRVVENAT-------VPVIEHGVG-NCHIYVDES 235 (417)
T ss_pred hcCceeEEEcCCcHHHHHHHHhCCc-------CCEEecCcc-eEEEEeccc
Confidence 3454455555668888888877765 2333 5575 999999975
No 54
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=76.02 E-value=9.5 Score=30.47 Aligned_cols=44 Identities=14% Similarity=0.170 Sum_probs=30.1
Q ss_pred CEEEEEccccHHHHHHHHHCCCCC--cc--ccCCCccccccCceeEEeCc
Q 036055 33 QKRPIIGLAVQTLLKALTNSGLID--PA--SHRLEEIDACSVECEVNIAQ 78 (105)
Q Consensus 33 ~~~~V~a~~G~SLMeaa~~nGv~g--~~--~~~i~gi~~CGATCHVyVd~ 78 (105)
..++|++..|.||++++...+... .+ ...+. .|.|| .|=|.|+.
T Consensus 25 ~~~~v~~~~~~tvLd~L~~i~~~~d~tl~~~~~C~-~G~Cg-sC~v~ING 72 (279)
T PRK12576 25 QEYKVKVDRFTQVTEALRRIKEEQDPTLSYRASCH-MAVCG-SCGMKING 72 (279)
T ss_pred EEEEEecCCCCHHHHHHHHhCCccCCCceecCCCC-CCCCC-CCEEEECC
Confidence 458899999999999999977521 11 11121 35575 78888875
No 55
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=75.53 E-value=3.3 Score=29.20 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=26.6
Q ss_pred CEEEEEccccHHHHHHH--HHCCCCCc--cccCCCccccccCceeEEeCc
Q 036055 33 QKRPIIGLAVQTLLKAL--TNSGLIDP--ASHRLEEIDACSVECEVNIAQ 78 (105)
Q Consensus 33 ~~~~V~a~~G~SLMeaa--~~nGv~g~--~~~~i~gi~~CGATCHVyVd~ 78 (105)
..++|+...|.|+|+++ .++..+.. .++.+-. |-|| +|=|.|+-
T Consensus 19 ~~y~v~~~~~~tVLd~L~~Ik~~~D~sLafr~sCr~-giCG-sCam~ING 66 (110)
T PF13085_consen 19 QEYEVPVEPGMTVLDALNYIKEEQDPSLAFRYSCRS-GICG-SCAMRING 66 (110)
T ss_dssp EEEEEEGGSTSBHHHHHHHHHHHT-TT--B--SSSS-SSSS-TTEEEETT
T ss_pred EEEEecCCCCCcHHHHHHHHHhccCCCeEEEecCCC-CCCC-CCEEEECC
Confidence 35789999999999999 34444322 2221211 4465 77787774
No 56
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=71.17 E-value=10 Score=29.64 Aligned_cols=18 Identities=22% Similarity=0.074 Sum_probs=15.6
Q ss_pred CEEEEEccccHHHHHHHH
Q 036055 33 QKRPIIGLAVQTLLKALT 50 (105)
Q Consensus 33 ~~~~V~a~~G~SLMeaa~ 50 (105)
.+.+|++..|.||++++.
T Consensus 24 ~~y~v~~~~~~tvLdaL~ 41 (239)
T PRK13552 24 VTYQLEETPGMTLFIALN 41 (239)
T ss_pred EEEEecCCCCCCHHHHHH
Confidence 458899999999999993
No 57
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=70.92 E-value=3.9 Score=26.36 Aligned_cols=30 Identities=27% Similarity=0.246 Sum_probs=23.5
Q ss_pred EEEECCCCCEEEEEccccHHHHHHH----HHCCC
Q 036055 25 LFAIDPDGQKRPIIGLAVQTLLKAL----TNSGL 54 (105)
Q Consensus 25 Itfid~DG~~~~V~a~~G~SLMeaa----~~nGv 54 (105)
+.+.-|||....|.+.+|.|+.+++ ...|+
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L 36 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGL 36 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT-
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCC
Confidence 5677899999999999999998877 44565
No 58
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=67.17 E-value=6.1 Score=24.42 Aligned_cols=27 Identities=19% Similarity=0.100 Sum_probs=20.9
Q ss_pred EEEECCCCCEEEEEccccHHHHHHHHHCC
Q 036055 25 LFAIDPDGQKRPIIGLAVQTLLKALTNSG 53 (105)
Q Consensus 25 Itfid~DG~~~~V~a~~G~SLMeaa~~nG 53 (105)
|++..+||.... .+.|.|.++.|..-+
T Consensus 1 I~v~lpdG~~~~--~~~g~T~~d~A~~I~ 27 (60)
T PF02824_consen 1 IRVYLPDGSIKE--LPEGSTVLDVAYSIH 27 (60)
T ss_dssp EEEEETTSCEEE--EETTBBHHHHHHHHS
T ss_pred CEEECCCCCeee--CCCCCCHHHHHHHHC
Confidence 345559998776 788999999997654
No 59
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=66.84 E-value=9.2 Score=29.93 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=26.9
Q ss_pred CEEEEEccccHHHHHHHHHC--CCCCcc--ccCCCccccccCceeEEeCcc
Q 036055 33 QKRPIIGLAVQTLLKALTNS--GLIDPA--SHRLEEIDACSVECEVNIAQE 79 (105)
Q Consensus 33 ~~~~V~a~~G~SLMeaa~~n--Gv~g~~--~~~i~gi~~CGATCHVyVd~e 79 (105)
..+.|++..|.||++++..- .++..+ +..+. .|-|| +|=|.|+..
T Consensus 25 ~~~~v~~~~~~tvl~~L~~ik~~~d~~l~fr~~C~-~giCG-sC~v~InG~ 73 (244)
T PRK12385 25 QTYEVPYDETTSLLDALGYIKDNLAPDLSYRWSCR-MAICG-SCGMMVNNV 73 (244)
T ss_pred EEEEeeCCCCCcHHHHHHHHHHhcCCCceeccCCC-CCcCC-CCcceECcc
Confidence 45778888999999999443 221111 11111 14465 888888853
No 60
>PF12957 DUF3846: Domain of unknown function (DUF3846); InterPro: IPR024559 A family of uncharacterised proteins found by clustering human gut metagenomic sequences []. In a few cases it is found fused to the C terminus of ArdA (Pfam:PF07275). ArdA functions in bacterial conjugation to allow an unmodified plasmid to evade restriction in the recipient bacterium and yet acquire cognate modification [].
Probab=65.34 E-value=19 Score=23.99 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=36.2
Q ss_pred EEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccc
Q 036055 24 HLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEW 80 (105)
Q Consensus 24 ~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew 80 (105)
|+-+|+++|.....+......-||.++ -|. |+.+.- +-.+.+|+|++-
T Consensus 1 kvL~i~p~~~~~~~~i~~~l~~lq~~V-gG~-------ie~v~l-~~~~~l~~neeG 48 (95)
T PF12957_consen 1 KVLVIEPGGRPEVIEIDNSLEALQKLV-GGY-------IEVVYL-DDGVVLYCNEEG 48 (95)
T ss_pred CEEEECCCCccEEEecCCCHHHHHHHH-CCe-------EEEEec-CCCEEEEEeCcc
Confidence 467899999999999999999999999 443 232211 146889999986
No 61
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=62.32 E-value=11 Score=26.39 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=25.3
Q ss_pred EEEEECCCCCEEEEEcc---ccHHHHHHH-HHCCCCC
Q 036055 24 HLFAIDPDGQKRPIIGL---AVQTLLKAL-TNSGLID 56 (105)
Q Consensus 24 ~Itfid~DG~~~~V~a~---~G~SLMeaa-~~nGv~g 56 (105)
.|+||..||+.++|++. .++++|+-+ +.-|+++
T Consensus 2 vi~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 2 VIRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 48899999999999985 689999877 5667743
No 62
>PF06290 PsiB: Plasmid SOS inhibition protein (PsiB); InterPro: IPR009385 This family consists of several plasmid SOS inhibition protein (PsiB) sequences [].; PDB: 3NCT_B.
Probab=61.45 E-value=10 Score=28.46 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=20.5
Q ss_pred CccccceeecCCCC--------CcccCcceEEEEECCCCCEEEE
Q 036055 2 QFFSKQWRYTAAPS--------AKVAYRIVHLFAIDPDGQKRPI 37 (105)
Q Consensus 2 ~~~~~~~~~~~~~~--------~~~~~~M~~Itfid~DG~~~~V 37 (105)
-|||||.|.+.... |--.+--=-+.|+..+|.-..|
T Consensus 58 GffPVq~Rftp~~~~~~l~vCSpG~~sp~W~~vl~~~~G~~~~v 101 (143)
T PF06290_consen 58 GFFPVQCRFTPSHERFHLAVCSPGEVSPYWMLVLVNRGGQPFAV 101 (143)
T ss_dssp S-SSSEEEEEETT-SEEEEEE-SSSS-SSEEEEEEECCC-SEEE
T ss_pred cEeeEEEEecCCCCcEEEEEcCCCCcCcceEEEEECCCCcEEEE
Confidence 48999999987761 1111111127789999975443
No 63
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=59.53 E-value=13 Score=25.05 Aligned_cols=41 Identities=24% Similarity=0.174 Sum_probs=30.9
Q ss_pred EEEECCCCCEEEEEccccHHHHHHHH----HCCCCCccccCCCccccccCceeEEeCc
Q 036055 25 LFAIDPDGQKRPIIGLAVQTLLKALT----NSGLIDPASHRLEEIDACSVECEVNIAQ 78 (105)
Q Consensus 25 Itfid~DG~~~~V~a~~G~SLMeaa~----~nGv~g~~~~~i~gi~~CGATCHVyVd~ 78 (105)
|.+.-||-.+..|++.+|+||.+++- .-|+- -+ .|+||..-
T Consensus 2 ir~~LPnqQrT~V~vrpG~tl~daL~KaLk~R~l~----------pe---~C~V~~~~ 46 (74)
T cd01816 2 IRVFLPNKQRTVVNVRPGMTLRDALAKALKVRGLQ----------PE---CCAVFRLG 46 (74)
T ss_pred eeEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCC----------hh---HeEEEEcC
Confidence 55677999999999999999888773 34551 12 58899873
No 64
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=56.86 E-value=28 Score=27.40 Aligned_cols=18 Identities=17% Similarity=0.049 Sum_probs=15.5
Q ss_pred CEEEEEccccHHHHHHHH
Q 036055 33 QKRPIIGLAVQTLLKALT 50 (105)
Q Consensus 33 ~~~~V~a~~G~SLMeaa~ 50 (105)
.+++|++..|.||++++.
T Consensus 23 q~y~v~~~~~~tvLdaL~ 40 (249)
T PRK08640 23 EEFEIPYRPNMNVISALM 40 (249)
T ss_pred EEEEecCCCCCcHHHHHH
Confidence 457889999999999994
No 65
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=56.04 E-value=10 Score=24.43 Aligned_cols=29 Identities=21% Similarity=0.045 Sum_probs=17.9
Q ss_pred EECCCCCEEEEEccccHHHHHHH----HHCCCC
Q 036055 27 AIDPDGQKRPIIGLAVQTLLKAL----TNSGLI 55 (105)
Q Consensus 27 fid~DG~~~~V~a~~G~SLMeaa----~~nGv~ 55 (105)
.|.++|.+..|.+.++.+|.++. ...|+.
T Consensus 1 vi~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~ 33 (65)
T PF11470_consen 1 VICYNFRRFKVKVTPNTTLNQVLEEACKKFGLD 33 (65)
T ss_dssp EE-TTS-EEEE---TTSBHHHHHHHHHHHTT--
T ss_pred CCccCCcEEEEEECCCCCHHHHHHHHHHHcCCC
Confidence 47899999999999999888766 555763
No 66
>COG3061 OapA Cell envelope opacity-associated protein A [Cell envelope biogenesis, outer membrane]
Probab=55.83 E-value=9.2 Score=30.84 Aligned_cols=29 Identities=14% Similarity=0.042 Sum_probs=25.3
Q ss_pred ECCCCCEEEEEccccHHHHHHHHHCCCCC
Q 036055 28 IDPDGQKRPIIGLAVQTLLKALTNSGLID 56 (105)
Q Consensus 28 id~DG~~~~V~a~~G~SLMeaa~~nGv~g 56 (105)
-...|..++..++.|.|||+.-++|+++-
T Consensus 153 ~~s~g~wqsy~V~~G~TLaQlFRdn~Lpi 181 (242)
T COG3061 153 KPSSGNWQSYTVPQGKTLAQLFRDNNLPI 181 (242)
T ss_pred ccCcccceeEEecCCccHHHHHhccCCCh
Confidence 33458999999999999999999999964
No 67
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=52.79 E-value=25 Score=22.53 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=26.0
Q ss_pred ceEEEEECCCCCEEEEEccccHHHHH----HHHHCCCC
Q 036055 22 IVHLFAIDPDGQKRPIIGLAVQTLLK----ALTNSGLI 55 (105)
Q Consensus 22 M~~Itfid~DG~~~~V~a~~G~SLMe----aa~~nGv~ 55 (105)
|..|++.+..|....+++.+..|+-+ ++...|++
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~ 38 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTR 38 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC
Confidence 67899999999999999887766643 34555663
No 68
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=52.26 E-value=17 Score=27.57 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=28.5
Q ss_pred CEEEEEccccHHHHHHHHHCCC---CC-ccccCCCccccccCceeEEeCc
Q 036055 33 QKRPIIGLAVQTLLKALTNSGL---ID-PASHRLEEIDACSVECEVNIAQ 78 (105)
Q Consensus 33 ~~~~V~a~~G~SLMeaa~~nGv---~g-~~~~~i~gi~~CGATCHVyVd~ 78 (105)
...+|++..|.||++++...+. +. .....+. .|.|| +|=|.|+.
T Consensus 15 ~~~~v~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~-~g~Cg-~C~v~vnG 62 (220)
T TIGR00384 15 QSYEVPADEGMTVLDALNYIKDEQDPSLAFRRSCR-NGICG-SCAMNVNG 62 (220)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHhcCCCceeecccC-CCCCC-CCeeEECC
Confidence 4567888999999999988662 11 0111121 25575 88888885
No 69
>TIGR03527 selenium_YedF selenium metabolism protein YedF. Members of this protein family are about 200 amino acids in size, and include the uncharacterized YedF protein of Escherichia coli. This family shares an N-terminal domain, modeled by pfam01206, with the sulfurtransferase TusA (also called SirA). The C-terminal domain includes a typical redox-active disulfide motif, CGXC. This protein family found only among those genomes that also carry the selenium donor protein SelD, and its connection to selenium metabolism is indicated by the method of partial phylogenetic profiling vs. SelD. Its gene typically is found next to selD. Members of this family are found even when selenocysteine and selenouridine biosynthesis pathways are, except for SelD, completely absent, as in Enterococcus faecalis. Its role in selenium metabolism is unclear, but may include either detoxification or a role in labile selenoprotein biosynthesis.
Probab=50.36 E-value=17 Score=27.76 Aligned_cols=42 Identities=26% Similarity=0.281 Sum_probs=27.7
Q ss_pred eEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeE
Q 036055 23 VHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEV 74 (105)
Q Consensus 23 ~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHV 74 (105)
|.-.|.=-+|..-+.+..+-.-.++.+.++|+. |-.|| ||==
T Consensus 121 p~~Ifl~n~gV~l~~~~~~~~e~Lk~L~~~Gv~---------I~~CG-tCl~ 162 (194)
T TIGR03527 121 PKRILFVNGGVKLTTEGSEVLEDLKELEKKGVE---------ILSCG-TCLD 162 (194)
T ss_pred ceEEEEEccceeeccCCchHHHHHHHHHHCCCE---------EEEeH-HHHH
Confidence 443344458888877766656667777888872 36797 7743
No 70
>PRK13701 psiB plasmid SOS inhibition protein B; Provisional
Probab=49.62 E-value=33 Score=25.75 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=19.7
Q ss_pred CccccceeecCCCCCc------ccCcceE--EEEECCCCCEE
Q 036055 2 QFFSKQWRYTAAPSAK------VAYRIVH--LFAIDPDGQKR 35 (105)
Q Consensus 2 ~~~~~~~~~~~~~~~~------~~~~M~~--Itfid~DG~~~ 35 (105)
-|||||.|.+.+.... +.+.-|. +.|+...|.-.
T Consensus 58 GffPVq~Rfsp~~~~~~l~vCSpG~~sP~W~~Vl~~~gG~~~ 99 (144)
T PRK13701 58 GFFPVQVRFTPAHERFHLALCSPGDVSPVWVLVLVNAGGEPF 99 (144)
T ss_pred CeeeEEEEecCCCCCeEEEEeCCCCCCcceEEEEEcCCCcEE
Confidence 4899999998754221 1222222 55666666543
No 71
>COG4427 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.11 E-value=11 Score=31.62 Aligned_cols=41 Identities=34% Similarity=0.443 Sum_probs=29.9
Q ss_pred HHHHHHHCCCCCccccCCCcccc-cc-------------------CceeEEeCccccccCCCCCh
Q 036055 45 LLKALTNSGLIDPASHRLEEIDA-CS-------------------VECEVNIAQEWLDRLPPRSY 89 (105)
Q Consensus 45 LMeaa~~nGv~g~~~~~i~gi~~-CG-------------------ATCHVyVd~ew~~klp~~~e 89 (105)
||-+|..-|.|. .|-+||. || ...-|.|+++|..-+||...
T Consensus 131 ll~va~q~~~Pl----~l~EiGsSaGLNL~~DRYrYrl~~~awGd~~spVriap~W~G~~PP~a~ 191 (350)
T COG4427 131 LLIVALQFGKPL----VLSEIGSSAGLNLRPDRYRYRLGGGAWGDEDSPVRIAPEWRGGLPPTAT 191 (350)
T ss_pred HHHHHHhcCCCe----EEEecccccccccChhhHHhhhccccccccCCCeeechhhcCCCCCCCc
Confidence 566777777754 2444544 77 57889999999999998654
No 72
>PLN02906 xanthine dehydrogenase
Probab=46.69 E-value=20 Score=34.55 Aligned_cols=33 Identities=33% Similarity=0.505 Sum_probs=25.6
Q ss_pred HHHHHHHHHCCCCCccccCCCccccccCceeEEeCc
Q 036055 43 QTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQ 78 (105)
Q Consensus 43 ~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ 78 (105)
.+|.+.+++.|+.|.-.+|-. |+|| .|-|.||.
T Consensus 2 ~~ll~~LR~~~l~g~k~gC~~--g~CG-aCtv~~~~ 34 (1319)
T PLN02906 2 QTLLEYLRDLGLTGTKLGCGE--GGCG-ACTVMVSH 34 (1319)
T ss_pred CcHHHHHHhCCCCCCCCCcCC--CCCC-CeEEEECC
Confidence 578999998888665555555 7897 89999993
No 73
>PF05423 Mycobact_memb: Mycobacterium membrane protein; InterPro: IPR008693 This family contains several membrane proteins from Mycobacterium species [].
Probab=41.72 E-value=40 Score=24.62 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=24.5
Q ss_pred CccccceeecCCCCCcccCcceEEEEECCCCCEEEEEc
Q 036055 2 QFFSKQWRYTAAPSAKVAYRIVHLFAIDPDGQKRPIIG 39 (105)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~M~~Itfid~DG~~~~V~a 39 (105)
+|-||+++|--.-.|- ...+|+|.|.||..+.++.
T Consensus 47 ~~~pk~V~YEV~G~~G---~~~~I~Y~D~~~~~~~~~~ 81 (140)
T PF05423_consen 47 PFNPKTVTYEVTGPPG---STATISYLDADGQPQQVDN 81 (140)
T ss_pred CCCCcEEEEEEEcCCC---CeEEEEEEcCCCceEeecC
Confidence 4667777776544432 2568999999998887653
No 74
>KOG4165 consensus Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism]
Probab=40.86 E-value=15 Score=31.67 Aligned_cols=10 Identities=20% Similarity=0.498 Sum_probs=8.9
Q ss_pred CceeEEeCcc
Q 036055 70 VECEVNIAQE 79 (105)
Q Consensus 70 ATCHVyVd~e 79 (105)
+-||||||.+
T Consensus 221 GichvYvd~d 230 (433)
T KOG4165|consen 221 GICHVYVDKD 230 (433)
T ss_pred ceeEEEeccc
Confidence 6999999976
No 75
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=40.11 E-value=56 Score=25.99 Aligned_cols=44 Identities=23% Similarity=0.223 Sum_probs=26.5
Q ss_pred CEEEEEccccHHHHHHH--HHCCCCC--ccccCCCccccccCceeEEeCc
Q 036055 33 QKRPIIGLAVQTLLKAL--TNSGLID--PASHRLEEIDACSVECEVNIAQ 78 (105)
Q Consensus 33 ~~~~V~a~~G~SLMeaa--~~nGv~g--~~~~~i~gi~~CGATCHVyVd~ 78 (105)
.+.+|+...|.||++++ .++-.+. ..++.+-+ |-|| +|=+.|+-
T Consensus 20 ~~yev~~~~~~~vLdaL~~Ik~e~d~~Lsfr~sCR~-gICG-SCam~ING 67 (234)
T COG0479 20 QTYEVPYDEGMTVLDALLYIKEEQDPTLSFRRSCRE-GICG-SCAMNING 67 (234)
T ss_pred EEEEecCCCCCcHHHHHHHHHHhcCCccchhhhccC-CcCC-cceeEECC
Confidence 35678888999999999 3433322 22222221 4476 77777764
No 76
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=39.94 E-value=48 Score=20.83 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=25.5
Q ss_pred cceEEEEECCCCCEEEEEccccHHHHHHHHHCCCC
Q 036055 21 RIVHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLI 55 (105)
Q Consensus 21 ~M~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~ 55 (105)
+|.+|++--. +...+++.+.|.|+.+.+..-|++
T Consensus 3 ~mm~v~vng~-~~~~~~~~~~~~tv~~ll~~l~~~ 36 (70)
T PRK08364 3 LMIRVKVIGR-GIEKEIEWRKGMKVADILRAVGFN 36 (70)
T ss_pred eEEEEEEecc-ccceEEEcCCCCcHHHHHHHcCCC
Confidence 4667777422 236678888999999999999984
No 77
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=38.06 E-value=51 Score=20.93 Aligned_cols=24 Identities=13% Similarity=-0.099 Sum_probs=20.8
Q ss_pred EEEEECCCCCEEEEEccccHHHHH
Q 036055 24 HLFAIDPDGQKRPIIGLAVQTLLK 47 (105)
Q Consensus 24 ~Itfid~DG~~~~V~a~~G~SLMe 47 (105)
+|++...+|....+++....|+-+
T Consensus 4 ~i~Vk~~~G~~~~~~v~~~~TV~~ 27 (80)
T cd01792 4 DLKVKMLGGNEFLVSLRDSMTVSE 27 (80)
T ss_pred EEEEEeCCCCEEEEEcCCCCcHHH
Confidence 799999999999999888777764
No 78
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=37.53 E-value=49 Score=19.60 Aligned_cols=20 Identities=40% Similarity=0.451 Sum_probs=16.5
Q ss_pred ceEEEEECCCCCEEEEEccc
Q 036055 22 IVHLFAIDPDGQKRPIIGLA 41 (105)
Q Consensus 22 M~~Itfid~DG~~~~V~a~~ 41 (105)
+-...|+++||..++|.=.+
T Consensus 28 ~GsY~y~~pdG~~~~V~Y~A 47 (52)
T PF00379_consen 28 RGSYSYIDPDGQTRTVTYVA 47 (52)
T ss_pred EEEEEEECCCCCEEEEEEEC
Confidence 56788999999999997544
No 79
>PF13103 TonB_2: TonB C terminal; PDB: 1LR0_A.
Probab=37.12 E-value=82 Score=19.63 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=19.0
Q ss_pred cceeecCCCCCcccCcceEEE-EECCCCCE--EEEEccccHHHHHHHHHCC
Q 036055 6 KQWRYTAAPSAKVAYRIVHLF-AIDPDGQK--RPIIGLAVQTLLKALTNSG 53 (105)
Q Consensus 6 ~~~~~~~~~~~~~~~~M~~It-fid~DG~~--~~V~a~~G~SLMeaa~~nG 53 (105)
.+|+.|.. ......+.|+ .+++||+. ..+.-..|......++..-
T Consensus 14 ~~w~~p~~---~~~~~~~~V~i~i~~dG~v~~~~i~~sSG~~~~D~av~~a 61 (85)
T PF13103_consen 14 QNWNPPPQ---DSGGLSVTVRITIDPDGRVISVRIVKSSGNPAFDAAVRRA 61 (85)
T ss_dssp HH----TT-----TT--EEEEEEE-TTSBEEEEEEEE--S-HHHHHHHHHH
T ss_pred HHcCCCCC---CCCCcEEEEEEEECCCCCEEEEEEecCCCCHHHHHHHHHH
Confidence 35777744 2233334444 48999986 4555567776666654443
No 80
>PF09626 DHC: Dihaem cytochrome c; InterPro: IPR018588 Dihaem cytochrome c (DHC) is a soluble c-type cytochrome that folds into two distinct domains, each binding a single haem group and connected by a small linker region. Despite little sequence similarity, the N-terminal domain (residues 12-75) is a class I type cytochrome c, that binds one of the haems, but the domain surrounding the other haem is structurally unique. DHC binds electrostatically to an oxygen-binding protein, sphaeroides haem protein (SHP), as a component of a conserved electron transfer pathway. DHC acts as the physiological electron donor for SHP during phototrophic growth []. In certain species DHC is found upstream of IPR011577 from INTERPRO. ; PDB: 2FWT_A 2FW5_A.
Probab=36.52 E-value=11 Score=26.94 Aligned_cols=14 Identities=14% Similarity=0.617 Sum_probs=7.3
Q ss_pred ccccCceeEEeCccc
Q 036055 66 DACSVECEVNIAQEW 80 (105)
Q Consensus 66 ~~CGATCHVyVd~ew 80 (105)
.+|| .||+...+++
T Consensus 3 ~eCg-sCH~aypP~~ 16 (120)
T PF09626_consen 3 EECG-SCHMAYPPGL 16 (120)
T ss_dssp HHTT-SSS----GGG
T ss_pred cchh-hccCcCCccc
Confidence 3696 9999998763
No 81
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=36.49 E-value=70 Score=17.47 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=21.4
Q ss_pred cceeecCCC----CCcccCcceEEEEECCCCCEEEEEcc
Q 036055 6 KQWRYTAAP----SAKVAYRIVHLFAIDPDGQKRPIIGL 40 (105)
Q Consensus 6 ~~~~~~~~~----~~~~~~~M~~Itfid~DG~~~~V~a~ 40 (105)
++|++.... .|.+++. +|-+.+.||.-+.++++
T Consensus 3 ~~W~~~~~~~~~~~~~v~~g--~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 3 VLWSYDTGGPIWSSPAVAGG--RVYVGTGDGNLYALDAA 39 (40)
T ss_dssp EEEEEE-SS---S--EECTS--EEEEE-TTSEEEEEETT
T ss_pred eeEEEECCCCcCcCCEEECC--EEEEEcCCCEEEEEeCC
Confidence 467776554 6677776 47788899999988875
No 82
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=36.18 E-value=87 Score=25.34 Aligned_cols=18 Identities=11% Similarity=-0.075 Sum_probs=13.5
Q ss_pred EEEEEccc-cHHHHHHHHH
Q 036055 34 KRPIIGLA-VQTLLKALTN 51 (105)
Q Consensus 34 ~~~V~a~~-G~SLMeaa~~ 51 (105)
+++|+... |.|+++++..
T Consensus 63 ~y~v~~~~~~~tVLd~L~~ 81 (276)
T PLN00129 63 SYKVDLNDCGPMVLDVLIK 81 (276)
T ss_pred EEEeCCCCCCchHHHHHHH
Confidence 45777764 8999999944
No 83
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=34.73 E-value=37 Score=22.53 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=13.6
Q ss_pred EEEEEccccHHHHHHHHHCCCCC
Q 036055 34 KRPIIGLAVQTLLKALTNSGLID 56 (105)
Q Consensus 34 ~~~V~a~~G~SLMeaa~~nGv~g 56 (105)
-++..++.|.||..+-.++|++.
T Consensus 2 W~~~~V~~GDtLs~iF~~~gls~ 24 (85)
T PF04225_consen 2 WQEYTVKSGDTLSTIFRRAGLSA 24 (85)
T ss_dssp --EEE--TT--HHHHHHHTT--H
T ss_pred CcEEEECCCCcHHHHHHHcCCCH
Confidence 36788899999999999999964
No 84
>PF12224 Amidoligase_2: Putative amidoligase enzyme; InterPro: IPR022025 This family of proteins are likely to act as amidoligase enzymes [] Protein in this family are found in conserved gene neighbourhoods encoding a glutamine amidotransferase-like thiol peptidase (in proteobacteria) or an Aig2 family cyclotransferase protein (in firmicutes) [].
Probab=34.58 E-value=54 Score=24.61 Aligned_cols=29 Identities=31% Similarity=0.557 Sum_probs=20.6
Q ss_pred HHHHHHHHHCCCCCccccCCCccccccCceeEEeCccc
Q 036055 43 QTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEW 80 (105)
Q Consensus 43 ~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew 80 (105)
+.|.++++++|-.+ .. ..|| +||+|+++-
T Consensus 95 ~~~~~~lr~~~~~~-----~~--~scg--~HVHv~~~~ 123 (252)
T PF12224_consen 95 DKVLEALRRNGAIG-----TN--DSCG--FHVHVGPEP 123 (252)
T ss_pred HHHHHHHHHcCCcc-----cc--CCee--EEEEECCCC
Confidence 57888888888632 11 4484 999999764
No 85
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=34.24 E-value=46 Score=21.19 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=13.7
Q ss_pred EEEEECCCCCEEEEEccccH
Q 036055 24 HLFAIDPDGQKRPIIGLAVQ 43 (105)
Q Consensus 24 ~Itfid~DG~~~~V~a~~G~ 43 (105)
+|.+.|+-|..+++...+|.
T Consensus 11 rVQlTD~Kgr~~Ti~L~~G~ 30 (54)
T PF14801_consen 11 RVQLTDPKGRKHTITLEPGG 30 (54)
T ss_dssp EEEEEETT--EEEEE--TT-
T ss_pred EEEEccCCCCeeeEEECCCC
Confidence 58899999999999998884
No 86
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=34.23 E-value=14 Score=31.97 Aligned_cols=27 Identities=15% Similarity=0.384 Sum_probs=18.7
Q ss_pred cccHHHHHHHHHCCCCCccccCCCcc-ccccCcee
Q 036055 40 LAVQTLLKALTNSGLIDPASHRLEEI-DACSVECE 73 (105)
Q Consensus 40 ~~G~SLMeaa~~nGv~g~~~~~i~gi-~~CGATCH 73 (105)
+-|.-+.+.+++.||+. -.+ ..|| |||
T Consensus 323 ~~g~eIa~~Lk~dgVDA------vILtstCg-tCt 350 (431)
T TIGR01917 323 QFAKEFSKELLAAGVDA------VILTSTUG-TCT 350 (431)
T ss_pred HHHHHHHHHHHHcCCCE------EEEcCCCC-cch
Confidence 56777888889999853 112 5686 776
No 87
>PF00659 POLO_box: POLO box duplicated region; InterPro: IPR000959 A subgroup of serine/threonine protein kinases, Polo or Polo-like kinases play multiple roles during the cell cycle. Polo kinases are required at several key points through mitosis, starting from control of the G2/M transition through phosphorylation of Cdc25C and mitotic cyclins. Polo kinases are characterised by an amino terminal catalytic domain, and a carboxy terminal non-catalytic domain consisting of three blocks of conserved sequences known as polo boxes which form one single functional domain []. The domain is named after its founding member encoded by the polo gene of Drosophila melanogaster []. This domain of around 70 amino acids has been found in species ranging from yeast to mammals. Polo boxes appear to mediate interaction with multiple proteins through protein:protein interactions; some but not all of these proteins are substrates for the kinase domain of the molecule []. The crystal structure of the polo domain of the murine protein, Sak, is dimeric, consisting of two alpha-helices and two six-stranded beta-sheets []. The topology of one polypeptide subunit of the dimer consists of, from its N- to C terminus, an extended strand segment, five beta-strands, one alpha-helix (A) and a C-terminal beta-strand. Beta-strands from one subunit form a contiguous antiparallel beta-sheet with beta-strands from the second subunit. The two beta-sheets pack with a crossing angle of 110 degrees, orienting the hydrophobic surfaces inward and the hydrophilic surfaces outward. Helix A, which is colinear with beta-strand 6 of the same polypeptide, buries a large portion of the non-overlapping hydrophobic beta-sheet surfaces. Interactions involving helices A comprise a majority of the hydrophobic core structure and also the dimer interface. Point mutations in the Polo box of the budding yeast Cdc5 protein abolish the ability of overexpressed Cdc5 to interact with the spindle poles and to organise cytokinetic structures [].; GO: 0005515 protein binding; PDB: 1MBY_B 3P37_A 3MHN_A 1Q4K_A 3HIK_A 3Q1I_A 3P35_A 3MHQ_A 1UMW_B 3MQ8_B ....
Probab=32.36 E-value=72 Score=19.64 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=21.7
Q ss_pred cceeecCCCCCcccCcceEEEEECCCCCEEEEEccc
Q 036055 6 KQWRYTAAPSAKVAYRIVHLFAIDPDGQKRPIIGLA 41 (105)
Q Consensus 6 ~~~~~~~~~~~~~~~~M~~Itfid~DG~~~~V~a~~ 41 (105)
+|+-+.+...=......-.|+||+++|..++.....
T Consensus 16 vqv~FnD~tkivl~~~~~~v~yi~~~~~~~~~~~~~ 51 (68)
T PF00659_consen 16 VQVNFNDHTKIVLSPDGRLVTYIDRDGERQTYSLSS 51 (68)
T ss_dssp EEEEETTS-EEEEETTCCEEEEE-TTS-EEEEECTC
T ss_pred EEEEEeCCCEEEECCCCCEEEEECCCCcEEEEEccc
Confidence 455555554333333344899999999999988765
No 88
>PRK13963 unkown domain/putative metalloprotease fusion protein; Provisional
Probab=31.45 E-value=30 Score=28.12 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=25.0
Q ss_pred cceEEEEECCCCCEEEEEc-------cccHHHHHHHHH
Q 036055 21 RIVHLFAIDPDGQKRPIIG-------LAVQTLLKALTN 51 (105)
Q Consensus 21 ~M~~Itfid~DG~~~~V~a-------~~G~SLMeaa~~ 51 (105)
.=|.|+.+|.+|..++|++ ..|.|||-.+-+
T Consensus 18 ~~~~~~~~d~~gk~~~~~a~~~~i~~~dgr~l~~~~~~ 55 (258)
T PRK13963 18 ASPRLSLFDAKGKARTVDAQALRIDFADGRSLMFDLSG 55 (258)
T ss_pred CCceEEEEcCCCCeeeeecceeEEecCCCceeEEeCCC
Confidence 3599999999999888766 689999975533
No 89
>PF14030 DUF4245: Protein of unknown function (DUF4245)
Probab=30.92 E-value=2.2e+02 Score=21.05 Aligned_cols=91 Identities=20% Similarity=0.267 Sum_probs=56.5
Q ss_pred CCccccceeecCCCCCcccC-cceEEEEECCCCCEEEEEcccc--HHHHHHHHHCCCCCccccCCCccccccCceeEEeC
Q 036055 1 PQFFSKQWRYTAAPSAKVAY-RIVHLFAIDPDGQKRPIIGLAV--QTLLKALTNSGLIDPASHRLEEIDACSVECEVNIA 77 (105)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~-~M~~Itfid~DG~~~~V~a~~G--~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd 77 (105)
|+ .|..|+-+.++-..... ...+|-|++++|.--.++-... ..+......+.-.. -...| =|.|.++|..
T Consensus 61 P~-lP~gW~~nSar~~~~~g~~~w~vG~vt~~~~yv~l~Qs~~~~~~~v~~~~~~~~~~-gt~~i-----~G~~W~~y~~ 133 (169)
T PF14030_consen 61 PE-LPEGWKANSARRQGVGGVPAWHVGYVTPDGQYVQLTQSDAPEDTWVASVTGNARET-GTRTI-----GGRTWQVYEG 133 (169)
T ss_pred CC-CCCCceeeeEEecCCCCcceEEEEEEcCCCCEEEEEEcCCCHHHHHHHhhCCCCCC-ccEEE-----CCEEEEEEEC
Confidence 56 78888888887555544 6889999999998777765433 33555544444321 00011 2369999998
Q ss_pred c-----cccccC--------CCCChHHHHHHHhh
Q 036055 78 Q-----EWLDRL--------PPRSYEEEYVLKRI 98 (105)
Q Consensus 78 ~-----ew~~kl--------p~~~e~E~dMLd~~ 98 (105)
+ .|...+ +.++++|.+.|-.+
T Consensus 134 ~~~~~~a~v~~~~~~t~vVtG~A~~~el~~lA~a 167 (169)
T PF14030_consen 134 PDDGRDAWVRDLGDVTVVVTGTASDEELETLAAA 167 (169)
T ss_pred CCCCcEEEEEecCCcEEEEEecCCHHHHHHHHHh
Confidence 5 454444 34666666666544
No 90
>KOG4616 consensus Mitochondrial ribosomal protein L55 [Translation, ribosomal structure and biogenesis]
Probab=30.57 E-value=55 Score=24.06 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=22.5
Q ss_pred EEEECCCCCEEEEEccccHHHHHHHHHC
Q 036055 25 LFAIDPDGQKRPIIGLAVQTLLKALTNS 52 (105)
Q Consensus 25 Itfid~DG~~~~V~a~~G~SLMeaa~~n 52 (105)
+.||.|||+...|.+.+-.-..+.|++-
T Consensus 60 ~kfi~pdgstimipaaeprk~fk~aldl 87 (137)
T KOG4616|consen 60 TKFIQPDGSTIMIPAAEPRKIFKLALDL 87 (137)
T ss_pred eeEEcCCCCeEeeeccCcHHHHhccccH
Confidence 6799999999999998777777766543
No 91
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=30.16 E-value=16 Score=31.68 Aligned_cols=27 Identities=11% Similarity=0.393 Sum_probs=19.1
Q ss_pred cccHHHHHHHHHCCCCCccccCCCcc-ccccCcee
Q 036055 40 LAVQTLLKALTNSGLIDPASHRLEEI-DACSVECE 73 (105)
Q Consensus 40 ~~G~SLMeaa~~nGv~g~~~~~i~gi-~~CGATCH 73 (105)
+-|.-+.+.+.+.||+. -.+ ..|| |||
T Consensus 323 ~~g~eIa~~Lk~dgVDA------VILTstCg-tC~ 350 (431)
T TIGR01918 323 QFAKEFVVELKQGGVDA------VILTSTUG-TCT 350 (431)
T ss_pred HHHHHHHHHHHHcCCCE------EEEcCCCC-cch
Confidence 67888888889999953 112 5686 776
No 92
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=29.98 E-value=32 Score=24.58 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=23.8
Q ss_pred cceEEEEECCCCCEEEEEc-ccc------------HHHHHHHHHCCCC
Q 036055 21 RIVHLFAIDPDGQKRPIIG-LAV------------QTLLKALTNSGLI 55 (105)
Q Consensus 21 ~M~~Itfid~DG~~~~V~a-~~G------------~SLMeaa~~nGv~ 55 (105)
+|-|+.|+|+||+- ..+. .-. ..+++.+.++|+.
T Consensus 1 ~~~~~~~~d~~~t~-~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~g~~ 47 (181)
T PRK08942 1 KSMKAIFLDRDGVI-NVDSDGYVKSPDEWIPIPGSIEAIARLKQAGYR 47 (181)
T ss_pred CCccEEEEECCCCc-ccCCccccCCHHHeEECCCHHHHHHHHHHCCCE
Confidence 58899999999984 3332 111 3477888888874
No 93
>PF00034 Cytochrom_C: Cytochrome c; InterPro: IPR003088 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues. The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Ambler [] recognised four classes of cytC. Class I includes the low-spin soluble cytC of mitochondria and bacteria, with the haem-attachment site towards the N terminus, and the sixth ligand provided by a methionine residue about 40 residues further on towards the C terminus. On the basis of sequence similarity, class I cytC were further subdivided into five classes, IA to IE. Class IB includes the eukaryotic mitochondrial cytC and prokaryotic 'short' cyt c2 exemplified by Rhodopila globiformis cyt c2; class IA includes 'long' cyt c2, such as Rhodospirillum rubrum cyt c2 and Aquaspirillum itersonii cyt c-550, which have several extra loops by comparison with class IB cytC.; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1YNR_B 2AI5_A 1AYG_A 3O5C_C 1YEA_A 3CXH_W 1YTC_A 1YEB_A 2YBB_Y 2B4Z_A ....
Probab=29.96 E-value=14 Score=22.07 Aligned_cols=13 Identities=15% Similarity=0.465 Sum_probs=7.8
Q ss_pred ccccCceeEEeCccc
Q 036055 66 DACSVECEVNIAQEW 80 (105)
Q Consensus 66 ~~CGATCHVyVd~ew 80 (105)
..| +.|| =++..-
T Consensus 10 ~~C-~~CH-~~~~~~ 22 (91)
T PF00034_consen 10 ANC-AACH-GADGNG 22 (91)
T ss_dssp HHT-TTTH-BTSTTS
T ss_pred CcC-hhcC-CCCCcC
Confidence 358 6999 444443
No 94
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=29.76 E-value=27 Score=29.77 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=28.0
Q ss_pred CceeEEeCccccccCCCCCh-HHHHHHHhhhhhcc
Q 036055 70 VECEVNIAQEWLDRLPPRSY-EEEYVLKRISRARS 103 (105)
Q Consensus 70 ATCHVyVd~ew~~klp~~~e-~E~dMLd~~~R~~~ 103 (105)
+||-|||...|...+.|-+. -|..++--++|+-+
T Consensus 172 Gt~dVyv~~~~v~~~~~g~sFGElALmyn~PRaAT 206 (368)
T KOG1113|consen 172 GTFDVYVNGTYVTTYSPGGSFGELALMYNPPRAAT 206 (368)
T ss_pred ceEEEEECCeEEeeeCCCCchhhhHhhhCCCcccc
Confidence 69999999999999998765 77777777777653
No 95
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=29.57 E-value=92 Score=18.79 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=21.4
Q ss_pred EEEEECCCCCEEEEEccccHHHHHH
Q 036055 24 HLFAIDPDGQKRPIIGLAVQTLLKA 48 (105)
Q Consensus 24 ~Itfid~DG~~~~V~a~~G~SLMea 48 (105)
+|++...+|..+.+++..-.|+.+.
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tV~~l 26 (76)
T cd01803 2 QIFVKTLTGKTITLEVEPSDTIENV 26 (76)
T ss_pred EEEEEcCCCCEEEEEECCcCcHHHH
Confidence 5889999999999999888887654
No 96
>PF07627 PSCyt3: Protein of unknown function (DUF1588); InterPro: IPR013039 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013042 from INTERPRO and IPR013043 from INTERPRO.
Probab=29.12 E-value=11 Score=26.19 Aligned_cols=12 Identities=33% Similarity=0.769 Sum_probs=10.3
Q ss_pred ccccCceeEEeCc
Q 036055 66 DACSVECEVNIAQ 78 (105)
Q Consensus 66 ~~CGATCHVyVd~ 78 (105)
..| +.||-++|+
T Consensus 70 ~~C-a~CH~~iDP 81 (101)
T PF07627_consen 70 PAC-ASCHRKIDP 81 (101)
T ss_pred CcH-HHHhhhhCc
Confidence 469 799999997
No 97
>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating).
Probab=27.89 E-value=63 Score=27.64 Aligned_cols=30 Identities=20% Similarity=0.151 Sum_probs=20.8
Q ss_pred cHHHHHHHHHCCCCCccccCCCccccccCceeEEeCcc
Q 036055 42 VQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQE 79 (105)
Q Consensus 42 G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~e 79 (105)
|..++++|-+.+.|- +.+-|+-||+||+++
T Consensus 196 s~~v~~~a~~~~~pv--------~~e~gGn~p~iV~~d 225 (488)
T TIGR02518 196 GEAMVKAAYSSGTPA--------IGVGPGNGPAYIERT 225 (488)
T ss_pred CHHHHHHHHHcCCCE--------EEEcCCCCeEEEeCC
Confidence 444788887777642 245558999999976
No 98
>COG0242 Def N-formylmethionyl-tRNA deformylase [Translation, ribosomal structure and biogenesis]
Probab=27.61 E-value=89 Score=23.65 Aligned_cols=25 Identities=8% Similarity=0.068 Sum_probs=20.4
Q ss_pred CcccCcceEEEEECCCCCEEEEEcc
Q 036055 16 AKVAYRIVHLFAIDPDGQKRPIIGL 40 (105)
Q Consensus 16 ~~~~~~M~~Itfid~DG~~~~V~a~ 40 (105)
...-.+.++|++.|.+|+..+++++
T Consensus 104 ~V~R~~~I~V~~~D~~G~~~~~~a~ 128 (168)
T COG0242 104 EVERPERITVKYLDRNGKPQELEAE 128 (168)
T ss_pred eeecccEEEEEEEcCCCCEEEEEEc
Confidence 3444568899999999999999875
No 99
>PRK13619 psbV cytochrome c-550; Provisional
Probab=27.46 E-value=44 Score=25.46 Aligned_cols=45 Identities=11% Similarity=0.214 Sum_probs=27.1
Q ss_pred EEECCCCCEEEEEc---cccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccccCCCCChHHHH
Q 036055 26 FAIDPDGQKRPIIG---LAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLDRLPPRSYEEEY 93 (105)
Q Consensus 26 tfid~DG~~~~V~a---~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~klp~~~e~E~d 93 (105)
.-.+.+|...++.. +.|+.|.+ ..| |.||+- =..++.|.-.-..+
T Consensus 35 v~~~~~G~t~~~s~~d~~~GkklF~------------------~~C-a~CH~g----G~nk~~Pnl~L~~~ 82 (160)
T PRK13619 35 IPLNEAGETTTLTSKQITNGQRLFV------------------QEC-TQCHLQ----GKTKTNNNVSLGLE 82 (160)
T ss_pred eeeCCCCCeEEeCHHHHHHHHHHHH------------------HHH-HHcccC----CCCCcCCCCCcCHH
Confidence 35678887777643 55666655 569 699997 23455444333333
No 100
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=27.21 E-value=43 Score=21.62 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=19.3
Q ss_pred ccCcceEEEEECCCCCEEEEEcccc
Q 036055 18 VAYRIVHLFAIDPDGQKRPIIGLAV 42 (105)
Q Consensus 18 ~~~~M~~Itfid~DG~~~~V~a~~G 42 (105)
|.+++|.+++.+.+|...+++-..|
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l~g 25 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDLKG 25 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGGTT
T ss_pred CcCCCCCcEeECCCCCEEEHHHHCC
Confidence 4688999999999997776654444
No 101
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=27.11 E-value=57 Score=22.11 Aligned_cols=28 Identities=18% Similarity=0.000 Sum_probs=22.8
Q ss_pred EECCCCCEEEEEccccHHHHHHH----HHCCC
Q 036055 27 AIDPDGQKRPIIGLAVQTLLKAL----TNSGL 54 (105)
Q Consensus 27 fid~DG~~~~V~a~~G~SLMeaa----~~nGv 54 (105)
+--+||..++|-+++|.|+.+.+ ...|+
T Consensus 4 V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~l 35 (77)
T cd01818 4 VCLPDNQPVLTYLRPGMSVEDFLESACKRKQL 35 (77)
T ss_pred EECCCCceEEEEECCCCCHHHHHHHHHHhcCC
Confidence 44589999999999999998865 44555
No 102
>PF14495 Cytochrom_C550: Cytochrome c-550 domain; PDB: 3ARC_V 1IZL 3A0H_V 3A0B_v 1E29_A 1F1C_B 1S5L_V 4FBY_i 3PRR_V 3PRQ_V ....
Probab=27.05 E-value=15 Score=27.33 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=10.7
Q ss_pred ECCCCCEEEEEc---cccHHHHH
Q 036055 28 IDPDGQKRPIIG---LAVQTLLK 47 (105)
Q Consensus 28 id~DG~~~~V~a---~~G~SLMe 47 (105)
.+..|...++.. ..|+.|..
T Consensus 11 ln~~G~t~~~s~~q~~~GkrLF~ 33 (135)
T PF14495_consen 11 LNEQGETVTFSPEQLKRGKRLFN 33 (135)
T ss_dssp SSTTS-EEE--HHHHHHHHHHHH
T ss_pred eCCCCCEEEECHHHHHHHHHHHH
Confidence 356677666643 56777766
No 103
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=26.32 E-value=71 Score=23.76 Aligned_cols=40 Identities=20% Similarity=0.319 Sum_probs=20.4
Q ss_pred EEEcccc--HHHHHHHHHCCCCCcccc---CCCccccccCceeEEe
Q 036055 36 PIIGLAV--QTLLKALTNSGLIDPASH---RLEEIDACSVECEVNI 76 (105)
Q Consensus 36 ~V~a~~G--~SLMeaa~~nGv~g~~~~---~i~gi~~CGATCHVyV 76 (105)
-+-+..+ .++++.+.++|++..... -.-|+|.|| +|-|-+
T Consensus 171 yicGp~~m~~~~~~~L~~~g~~~~i~~e~f~~cg~g~C~-~C~v~~ 215 (233)
T cd06220 171 YVCGPEIMMYKVLEILDERGVRAQFSLERYMKCGIGICG-SCCIDP 215 (233)
T ss_pred EEECCHHHHHHHHHHHHhcCCcEEEEecccccCcCCCcC-ccEecc
Confidence 3444443 346667788888321110 111235564 888774
No 104
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=26.14 E-value=84 Score=23.69 Aligned_cols=44 Identities=16% Similarity=0.183 Sum_probs=21.2
Q ss_pred EEEEEccccH--HHHHHHHHCCCCCcccc---CCCccccccCceeEEeCc
Q 036055 34 KRPIIGLAVQ--TLLKALTNSGLIDPASH---RLEEIDACSVECEVNIAQ 78 (105)
Q Consensus 34 ~~~V~a~~G~--SLMeaa~~nGv~g~~~~---~i~gi~~CGATCHVyVd~ 78 (105)
..-+=+..+. .+.++++++|++...+- -.-|+|.|| .|-|-++.
T Consensus 183 ~vyvCGp~~m~~~v~~~l~~~Gv~~~~~~e~~m~cg~G~C~-~C~~~~~~ 231 (250)
T PRK00054 183 AIYSCGPEIMMKKVVEILKEKKVPAYVSLERRMKCGIGACG-ACVCDTET 231 (250)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCcEEEEEcccccCcCcccC-cCCcccCC
Confidence 3344444442 24555677887431111 111235564 88776554
No 105
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=25.82 E-value=65 Score=25.48 Aligned_cols=18 Identities=11% Similarity=0.014 Sum_probs=14.5
Q ss_pred CEEEEE-ccccHHHHHHHH
Q 036055 33 QKRPII-GLAVQTLLKALT 50 (105)
Q Consensus 33 ~~~~V~-a~~G~SLMeaa~ 50 (105)
.+.+|+ +..|.||++++.
T Consensus 20 q~y~v~~~~~~~tvLd~L~ 38 (250)
T PRK07570 20 ETYEVDDISPDMSFLEMLD 38 (250)
T ss_pred EEEEecCCCCCCcHHHHHH
Confidence 456777 678999999994
No 106
>PRK06437 hypothetical protein; Provisional
Probab=25.02 E-value=1.3e+02 Score=18.78 Aligned_cols=25 Identities=16% Similarity=-0.001 Sum_probs=21.5
Q ss_pred CCCEEEEEccccHHHHHHHHHCCCC
Q 036055 31 DGQKRPIIGLAVQTLLKALTNSGLI 55 (105)
Q Consensus 31 DG~~~~V~a~~G~SLMeaa~~nGv~ 55 (105)
.|.+.+++.+.|.|+-+.+...|++
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~Lgi~ 33 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKDLGLD 33 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHHcCCC
Confidence 3466889999999999999999995
No 107
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=24.05 E-value=1.5e+02 Score=18.85 Aligned_cols=25 Identities=12% Similarity=0.024 Sum_probs=21.2
Q ss_pred eEEEEECCCCCEEEEEccccHHHHH
Q 036055 23 VHLFAIDPDGQKRPIIGLAVQTLLK 47 (105)
Q Consensus 23 ~~Itfid~DG~~~~V~a~~G~SLMe 47 (105)
.+|++....|...++++....|+-+
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~ 26 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEG 26 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHH
Confidence 3799999999999999988777654
No 108
>PF09227 DUF1962: Domain of unknown function (DUF1962); InterPro: IPR015308 Members of this family of fungal proteins are functionally uncharacterised []. ; PDB: 1UOY_A.
Probab=23.95 E-value=30 Score=22.57 Aligned_cols=11 Identities=27% Similarity=0.743 Sum_probs=5.4
Q ss_pred ccccc-CceeEE
Q 036055 65 IDACS-VECEVN 75 (105)
Q Consensus 65 i~~CG-ATCHVy 75 (105)
|-+|| +|||--
T Consensus 46 iqdc~~stc~g~ 57 (64)
T PF09227_consen 46 IQDCGASTCHGT 57 (64)
T ss_dssp EEE-SSS--EEE
T ss_pred eeecCccccccc
Confidence 45788 899964
No 109
>TIGR03045 PS_II_C550 cytochrome c-550. Members of this protein family are cytochrome c-550, the PsbV extrinsic protein of photosystem II, from both Cyanobacteria and chloroplasts. A paralog to this protein, PsbV2, is found in some species in addition to PsbV itself.
Probab=23.93 E-value=40 Score=25.27 Aligned_cols=21 Identities=10% Similarity=0.251 Sum_probs=12.4
Q ss_pred EECCCCCEEEEEc---cccHHHHH
Q 036055 27 AIDPDGQKRPIIG---LAVQTLLK 47 (105)
Q Consensus 27 fid~DG~~~~V~a---~~G~SLMe 47 (105)
-.+..|...++.. ..|..|.+
T Consensus 36 ~~~~~g~~~~~~~~~~~~Gk~lF~ 59 (159)
T TIGR03045 36 PLNSTGETVTLTEEQVKRGKRLFN 59 (159)
T ss_pred eecCCCCeEEeChHhHHHHHHHHH
Confidence 4567787776543 45555543
No 110
>PRK13621 psbV cytochrome c-550; Provisional
Probab=23.72 E-value=38 Score=25.93 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=11.8
Q ss_pred EECCCCCEEEEEc---cccHHHHH
Q 036055 27 AIDPDGQKRPIIG---LAVQTLLK 47 (105)
Q Consensus 27 fid~DG~~~~V~a---~~G~SLMe 47 (105)
-.+..|...++.+ ..|..|..
T Consensus 51 ~~~~~g~~~~~s~~d~~~G~~lF~ 74 (170)
T PRK13621 51 PLDAAGETQTFSPEQLTDGKQLFD 74 (170)
T ss_pred eeCCCCCeEEeCHHHHHhHHHHHH
Confidence 3566777776654 34544444
No 111
>TIGR03806 chp_HNE_0200 conserved hypothetical protein, HNE_0200 family. The model TIGR03805 describes an uncharacterized protein family that contains repeats associated with the formation of a right-handed helical stack of parallel beta strands, homologous to those found in a number of carbohydrate-binding proteins and sugar hydrolases. This model describes another uncharacterized protein family, found in the same species as TIGR03805 member proteins, usually as the adjacent gene or in a fusion protein. An example is HNE_0200 from Hyphomonas neptunium ATCC 15444. Sometimes two members of this family are with a single member of TIGR03805. The function is unknown.
Probab=23.71 E-value=69 Score=26.42 Aligned_cols=32 Identities=25% Similarity=0.457 Sum_probs=20.5
Q ss_pred EEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeC
Q 036055 24 HLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIA 77 (105)
Q Consensus 24 ~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd 77 (105)
.|++++++|+.+++. +-| +...+| .+||-.-+
T Consensus 123 ~~~~~~~~g~~~~~~-------------y~i--------Ps~~~C-~~CH~~~~ 154 (317)
T TIGR03806 123 ALSLVDPDGEGQTFT-------------YLV--------PSRNQC-KQCHQLAA 154 (317)
T ss_pred eeEEEcCCCCeeEEe-------------ecC--------CChHHh-HHhcCCCC
Confidence 567788888766543 233 434679 69996533
No 112
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=23.47 E-value=82 Score=21.36 Aligned_cols=31 Identities=16% Similarity=0.096 Sum_probs=23.3
Q ss_pred EEEEECCCC-CEEEEEccccHHHHHHHHHCCC
Q 036055 24 HLFAIDPDG-QKRPIIGLAVQTLLKALTNSGL 54 (105)
Q Consensus 24 ~Itfid~DG-~~~~V~a~~G~SLMeaa~~nGv 54 (105)
.|.|-.++. ...++++.+|.|+-+|...+|+
T Consensus 4 eV~yA~p~~q~~~~l~vp~GtTv~~Ai~~Sgi 35 (84)
T PF03658_consen 4 EVAYALPERQVILTLEVPEGTTVAQAIEASGI 35 (84)
T ss_dssp EEEEEETTCEEEEEEEEETT-BHHHHHHHHTH
T ss_pred EEEEECCCeEEEEEEECCCcCcHHHHHHHcCc
Confidence 455555554 3467889999999999999998
No 113
>PF10976 DUF2790: Protein of unknown function (DUF2790); InterPro: IPR021245 This family of proteins with unknown function appear to be restricted to Pseudomonadaceae.
Probab=22.98 E-value=1.1e+02 Score=20.46 Aligned_cols=16 Identities=13% Similarity=0.113 Sum_probs=14.2
Q ss_pred EEEEECCCCCEEEEEc
Q 036055 24 HLFAIDPDGQKRPIIG 39 (105)
Q Consensus 24 ~Itfid~DG~~~~V~a 39 (105)
..||.|.-|..|+|+=
T Consensus 54 ~MtY~DS~G~~h~l~Y 69 (78)
T PF10976_consen 54 RMTYEDSQGELHTLEY 69 (78)
T ss_pred EEEEECCCCCEEEEEe
Confidence 4789999999999975
No 114
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=22.97 E-value=1.3e+02 Score=20.50 Aligned_cols=26 Identities=12% Similarity=0.005 Sum_probs=21.7
Q ss_pred EEEECCCCCEEEEEccccHHHHHHHH
Q 036055 25 LFAIDPDGQKRPIIGLAVQTLLKALT 50 (105)
Q Consensus 25 Itfid~DG~~~~V~a~~G~SLMeaa~ 50 (105)
|.|.-.||+.++|.+...+|.-+++.
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~ 30 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQ 30 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHH
Confidence 55666999999999999999887663
No 115
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=22.96 E-value=90 Score=19.94 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=12.7
Q ss_pred EEEEECCCCCEEEEE
Q 036055 24 HLFAIDPDGQKRPII 38 (105)
Q Consensus 24 ~Itfid~DG~~~~V~ 38 (105)
.+.|.||||++-++-
T Consensus 93 ~~~~~DP~Gn~iel~ 107 (112)
T cd08344 93 GVWFRDPDGNLLQVK 107 (112)
T ss_pred EEEEECCCCCEEEEe
Confidence 589999999887765
No 116
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=22.56 E-value=1.1e+02 Score=25.53 Aligned_cols=63 Identities=21% Similarity=0.246 Sum_probs=36.3
Q ss_pred ceEEEEECCCCCEEEEEccccHHHHHHHHH--CCCCCccccCCCcc-ccccCceeE----EeCccccccCCCCC
Q 036055 22 IVHLFAIDPDGQKRPIIGLAVQTLLKALTN--SGLIDPASHRLEEI-DACSVECEV----NIAQEWLDRLPPRS 88 (105)
Q Consensus 22 M~~Itfid~DG~~~~V~a~~G~SLMeaa~~--nGv~g~~~~~i~gi-~~CGATCHV----yVd~ew~~klp~~~ 88 (105)
+.||||+.+++...-.+.-+|-.||..+.+ .|.+= .=+|. +..|-.|+- +...+|+.+-||.|
T Consensus 168 IaNiT~l~~~~~~~~fDtGPGN~liD~~~~~~~~~~y----D~~G~~A~~G~v~~~ll~~ll~~pyf~~~pPKS 237 (364)
T PF03702_consen 168 IANITFLPPGGDVIGFDTGPGNMLIDAWIQRHTGLPY----DKDGEWAASGKVNEELLDRLLSHPYFKRPPPKS 237 (364)
T ss_dssp EEEEEEE-TTS--EEEEEEESSHHHHHHHHHHCS-SS-----GGGHHHHCS---HHHHHHHHTSHHHHS-SS--
T ss_pred ceEEEEecCCCCceeeccCcHHHHHHHHHHHHhCCCc----CcCcHhhCcCCCCHHHHHHHhcCccccCCCCCc
Confidence 889999999998888899999999998854 44421 11222 456633332 33456777777654
No 117
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=22.55 E-value=1.4e+02 Score=18.00 Aligned_cols=24 Identities=8% Similarity=-0.058 Sum_probs=20.0
Q ss_pred EEEEECCCCCEEEEEccccHHHHH
Q 036055 24 HLFAIDPDGQKRPIIGLAVQTLLK 47 (105)
Q Consensus 24 ~Itfid~DG~~~~V~a~~G~SLMe 47 (105)
+|++.+.+|....+++....|+-+
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~ 25 (76)
T cd01806 2 LIKVKTLTGKEIEIDIEPTDKVER 25 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCCHHH
Confidence 588999999999999888777654
No 118
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=22.55 E-value=1.4e+02 Score=17.76 Aligned_cols=25 Identities=16% Similarity=0.033 Sum_probs=21.0
Q ss_pred EEEEECCCCCEEEEEccccHHHHHH
Q 036055 24 HLFAIDPDGQKRPIIGLAVQTLLKA 48 (105)
Q Consensus 24 ~Itfid~DG~~~~V~a~~G~SLMea 48 (105)
+|.+...+|..++++.....|+-+.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~l 26 (72)
T cd01809 2 EIKVKTLDSQTHTFTVEEEITVLDL 26 (72)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHH
Confidence 6888899999999999888877654
No 119
>PF01359 Transposase_1: Transposase (partial DDE domain); InterPro: IPR001888 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element. Transposases have been grouped into various families [, , ]. This family includes the mariner transposase []. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 3HOT_B 3HOS_A 3K9K_B 3F2K_B 3K9J_B 2F7T_A.
Probab=22.51 E-value=84 Score=20.75 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=23.5
Q ss_pred ccceeecCCCCCcccCc-------ceEEEEECCCCCEEEEEccccHHH
Q 036055 5 SKQWRYTAAPSAKVAYR-------IVHLFAIDPDGQKRPIIGLAVQTL 45 (105)
Q Consensus 5 ~~~~~~~~~~~~~~~~~-------M~~Itfid~DG~~~~V~a~~G~SL 45 (105)
+.||-.++.+.|+..-. |..| |-|..|..+..-.+.|.|+
T Consensus 8 ~~~W~~~ge~~~~~~K~~~~~kKvMl~v-wWd~~Gvi~~e~L~~~~TI 54 (81)
T PF01359_consen 8 SKQWVDPGEPPPTKPKPELHPKKVMLSV-WWDAKGVIHYELLPPGKTI 54 (81)
T ss_dssp -EEEESTTS----EE---TT--EEEEEE-EEETTEEEEEEEESTT---
T ss_pred cccccCCCCCCCCccCccCcCCceEEEE-EeeccCcEeeeeCCCCccc
Confidence 57898888876554322 6554 6778899998888888876
No 120
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=22.36 E-value=1.4e+02 Score=19.98 Aligned_cols=28 Identities=11% Similarity=-0.077 Sum_probs=20.1
Q ss_pred ECCCCCEEEEEccccHHHHHHHHHCCCC
Q 036055 28 IDPDGQKRPIIGLAVQTLLKALTNSGLI 55 (105)
Q Consensus 28 id~DG~~~~V~a~~G~SLMeaa~~nGv~ 55 (105)
..++|....-.-..|..|.++|++++||
T Consensus 74 n~~~~~~~~~~~~dg~~iRR~A~~~~Ip 101 (112)
T cd00532 74 NLRDPRRDRCTDEDGTALLRLARLYKIP 101 (112)
T ss_pred EcCCCCcccccCCChHHHHHHHHHcCCC
Confidence 3356655222356799999999999996
No 121
>PF03990 DUF348: Domain of unknown function (DUF348) ; InterPro: IPR007137 This domain normally occurs as tandem repeats; however it is found as a single copy in the Saccharomyces cerevisiae (Baker's yeast) DNA-binding nuclear protein YCR593 (P25357 from SWISSPROT).
Probab=22.27 E-value=1.6e+02 Score=16.78 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=21.1
Q ss_pred CCCCCEEEEEccccHHHHHHHHHCCCC
Q 036055 29 DPDGQKRPIIGLAVQTLLKALTNSGLI 55 (105)
Q Consensus 29 d~DG~~~~V~a~~G~SLMeaa~~nGv~ 55 (105)
.-||.++++.-.. .|+=+++.++||.
T Consensus 5 ~~dG~~~~v~T~a-~tV~~~L~~~gI~ 30 (43)
T PF03990_consen 5 TVDGKEKTVYTTA-STVGDALKELGIT 30 (43)
T ss_pred EECCEEEEEEeCC-CCHHHHHHhCCCC
Confidence 3499999888554 4999999999995
No 122
>PRK13620 psbV cytochrome c-550; Provisional
Probab=22.16 E-value=37 Score=27.04 Aligned_cols=20 Identities=15% Similarity=0.320 Sum_probs=11.7
Q ss_pred EECCCCCEEEEEc---cccHHHH
Q 036055 27 AIDPDGQKRPIIG---LAVQTLL 46 (105)
Q Consensus 27 fid~DG~~~~V~a---~~G~SLM 46 (105)
-++++|...+... +.|+-|.
T Consensus 89 ~ln~~G~tvtfS~eq~~~GkqLF 111 (215)
T PRK13620 89 KLNPQGDNVTLSLKQVAEGKQLF 111 (215)
T ss_pred eeCCCCCeecCCHHHHHHHHHHH
Confidence 5778887766533 4454443
No 123
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=21.61 E-value=2.1e+02 Score=18.53 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=22.4
Q ss_pred ceEEEEECCCCCE-EEEEccccHHHHHHHHHCC
Q 036055 22 IVHLFAIDPDGQK-RPIIGLAVQTLLKALTNSG 53 (105)
Q Consensus 22 M~~Itfid~DG~~-~~V~a~~G~SLMeaa~~nG 53 (105)
+|++.|. .||.. ....+..-..|++.....|
T Consensus 72 ~Pt~~~~-~~G~~v~~~~G~~~~~l~~~~~~~~ 103 (103)
T cd02985 72 VPHFLFY-KDGEKIHEEEGIGPDELIGDVLYYG 103 (103)
T ss_pred CCEEEEE-eCCeEEEEEeCCCHHHHHHHHHhcC
Confidence 8998777 78863 4667777788887766554
No 124
>PF11148 DUF2922: Protein of unknown function (DUF2922); InterPro: IPR021321 This bacterial family of proteins has no known function.
Probab=21.55 E-value=2.2e+02 Score=17.80 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=26.2
Q ss_pred eEEEEECCCCCEEEEEcc---------ccHHHHHHHHHCCC
Q 036055 23 VHLFAIDPDGQKRPIIGL---------AVQTLLKALTNSGL 54 (105)
Q Consensus 23 ~~Itfid~DG~~~~V~a~---------~G~SLMeaa~~nGv 54 (105)
-+++|.+.+|..+++... .=..+|+..+.+++
T Consensus 3 L~l~F~~~~gk~~ti~i~~pk~~lt~~~V~~~m~~ii~~~v 43 (69)
T PF11148_consen 3 LELVFKTEDGKTFTISIPNPKEDLTEAEVKAAMQAIIAKKV 43 (69)
T ss_pred EEEEEEcCCCCEEEEEcCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 367899999999988763 33579999999998
No 125
>CHL00133 psbV photosystem II cytochrome c550; Validated
Probab=21.54 E-value=47 Score=25.08 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=11.8
Q ss_pred EECCCCCEEEEEcc---ccHHHH
Q 036055 27 AIDPDGQKRPIIGL---AVQTLL 46 (105)
Q Consensus 27 fid~DG~~~~V~a~---~G~SLM 46 (105)
-.+.+|...++..+ .|..|.
T Consensus 37 ~~~~~g~~~~~t~~~~~~Gk~lF 59 (163)
T CHL00133 37 VLDSSGKTVVLTPEQVKRGKRLF 59 (163)
T ss_pred eeCCCCCeEeeCHHHHHHHHHHH
Confidence 46777877766543 444443
No 126
>PF03413 PepSY: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR005075 This signature, PepSY, is found in the propeptide of members of the MEROPS peptidase family M4 (clan MA(E)), which contains the thermostable thermolysins (3.4.24.27 from EC), and related thermolabile neutral proteases (bacillolysins) (3.4.24.28 from EC) from various species of Bacillus. It is also in many non-peptidase proteins, including Bacillus subtilis YpeB protein - a regulator of SleB spore cortex lytic enzyme - and a large number of eubacterial and archaeal cell wall-associated and secreted proteins which are mostly annotated as 'hypothetical protein'. Many extracellular bacterial proteases are produced as proenzymes. The propeptides usually have a dual function, i.e. they function as an intramolecular chaperone required for the folding of the polypeptide and as an inhibitor preventing premature activation of the enzyme. Analysis of the propeptide region of the M4 family of peptidases reveals two regions of conservation, the PepSY domain and a second domain, proximate to the N terminus, the FTP domain (IPR011096 from INTERPRO), which is also found in isolation in the propeptide of eukaryotic peptidases belong to MEROPS peptidase family M36. Propeptide domain swapping experiments, for example swapping the propeptide domain of PA protease with that of vibrolysin, both propeptides contain the FTP and PepSY domains, allows the PA protease domain to fold correctly and inhibits the C-terminal autoprocessing activity. However, swapping the propeptide of PA protease for the thermolysin propeptide, does not facilitate the correct folding nor the processing of the chimaeric protein into an active peptidase []. Mutational analysis of the Pseudomonas aeruginosa elastase gene revealed two mutations in the propeptide which resulted in the loss of inhibitory activity but not chaperone activity: A-15V and T-153I (where +1 is defined as the first residue of the mature peptidase). Both mutations resulted in peptidase activity, the T-153V mutation being much less effective than the A-15I mutation [] in activating peptidase activity. The T-153V mutation lies N-terminal to the FTP domain while the A-15I mutation is C-terminal to the PepSY domain. Given the diverse range of other proteins, both domains occur in in isolation, the exact function of each is still unclear; though it has been proposed that the PepSY domain primarily has inhibitory activity and in conjunction with the FTP domain in chaperone activity. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 2GU3_A 3NQZ_A 3NQY_A 2KGY_A.
Probab=21.43 E-value=1.2e+02 Score=17.46 Aligned_cols=20 Identities=15% Similarity=0.295 Sum_probs=13.9
Q ss_pred EEEEEC---CCCCEEE--EEccccH
Q 036055 24 HLFAID---PDGQKRP--IIGLAVQ 43 (105)
Q Consensus 24 ~Itfid---~DG~~~~--V~a~~G~ 43 (105)
.|.|.+ ++|.... |++..|.
T Consensus 35 ~v~~~~~~~~~~~~~~v~VDa~tG~ 59 (64)
T PF03413_consen 35 EVEVVSDDDPDGGEYEVYVDAYTGE 59 (64)
T ss_dssp EEEEEBTTSTTTEEEEEEEETTT--
T ss_pred EEEEEEEecCCCCEEEEEEECCCCe
Confidence 466665 8998888 8888884
No 127
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=21.21 E-value=1.6e+02 Score=17.99 Aligned_cols=25 Identities=16% Similarity=-0.043 Sum_probs=20.8
Q ss_pred EEEEECCCCCEEEEEccccHHHHHH
Q 036055 24 HLFAIDPDGQKRPIIGLAVQTLLKA 48 (105)
Q Consensus 24 ~Itfid~DG~~~~V~a~~G~SLMea 48 (105)
+|++...+|..+.+++....|+-+.
T Consensus 2 ~i~vk~~~g~~~~l~v~~~~TV~~l 26 (77)
T cd01805 2 KITFKTLKQQTFPIEVDPDDTVAEL 26 (77)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHH
Confidence 6888899999999999888776553
No 128
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=20.60 E-value=51 Score=25.59 Aligned_cols=13 Identities=15% Similarity=0.125 Sum_probs=11.0
Q ss_pred ccccCceeEEeCc
Q 036055 66 DACSVECEVNIAQ 78 (105)
Q Consensus 66 ~~CGATCHVyVd~ 78 (105)
|+||-|||.++-.
T Consensus 13 ga~GKT~ll~~~t 25 (198)
T KOG0393|consen 13 GAVGKTCLLISYT 25 (198)
T ss_pred CCcCceEEEEEec
Confidence 7899999988764
No 129
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=20.53 E-value=2.2e+02 Score=18.72 Aligned_cols=31 Identities=29% Similarity=0.305 Sum_probs=24.8
Q ss_pred EEEEECCCCCEEEEEccccH-----HHHHHHHHCCC
Q 036055 24 HLFAIDPDGQKRPIIGLAVQ-----TLLKALTNSGL 54 (105)
Q Consensus 24 ~Itfid~DG~~~~V~a~~G~-----SLMeaa~~nGv 54 (105)
...|.-+||.+.+|.+-+|. +|+++..++++
T Consensus 30 H~q~kHp~~~~vtVP~Hp~~dl~~Gtl~~Ilkqa~l 65 (66)
T COG1724 30 HRQYKHPDGGRVTVPFHPGEDLPPGTLRSILKQAGL 65 (66)
T ss_pred eeEEEcCCCCEEEecCCCccccCcHHHHHHHHHhcC
Confidence 57899999999999865554 67888887775
No 130
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=20.50 E-value=1.1e+02 Score=19.66 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=12.8
Q ss_pred EEEEECCCCCEEEEEc
Q 036055 24 HLFAIDPDGQKRPIIG 39 (105)
Q Consensus 24 ~Itfid~DG~~~~V~a 39 (105)
.+.|.||||.+.++-.
T Consensus 94 ~~~~~DPdG~~iEl~~ 109 (113)
T cd07267 94 RVTLTDPDGFPVELVY 109 (113)
T ss_pred EEEEECCCCCEEEEEe
Confidence 5889999998876643
No 131
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=20.20 E-value=1.8e+02 Score=17.64 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=22.3
Q ss_pred EEEEECCCCCEEEEE---ccccHHHHHHHHHCCC
Q 036055 24 HLFAIDPDGQKRPII---GLAVQTLLKALTNSGL 54 (105)
Q Consensus 24 ~Itfid~DG~~~~V~---a~~G~SLMeaa~~nGv 54 (105)
.|+++..||.+..|+ +..=.+|.+.+.+.|.
T Consensus 2 ~v~L~SsDg~~f~V~~~~a~~S~~i~~ml~~~~~ 35 (62)
T PF03931_consen 2 YVKLVSSDGQEFEVSREAAKQSKTIKNMLEDLGD 35 (62)
T ss_dssp EEEEEETTSEEEEEEHHHHTTSHHHHHHHHCTCC
T ss_pred EEEEEcCCCCEEEeeHHHHHHhHHHHHHHhhhcc
Confidence 589999999999999 4555566655554444
No 132
>PF13772 AIG2_2: AIG2-like family; PDB: 2QIK_A 2RBH_B 2I5T_B 2Q53_A 2PN7_B 3CRY_A.
Probab=20.14 E-value=2.4e+02 Score=18.01 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=22.9
Q ss_pred cCcceEEEEECCCCCEEEEEcccc-------------HHHHHHHHHCCCC
Q 036055 19 AYRIVHLFAIDPDGQKRPIIGLAV-------------QTLLKALTNSGLI 55 (105)
Q Consensus 19 ~~~M~~Itfid~DG~~~~V~a~~G-------------~SLMeaa~~nGv~ 55 (105)
.++-..|++.+.||....+-+-.. ..+.+.|+++|+|
T Consensus 27 ~Y~~~~v~V~~~~g~~~~a~tY~~~~~~~~~Ps~~Yl~~i~~GA~e~gLp 76 (83)
T PF13772_consen 27 AYRRIEVTVSTADGKPVEAFTYVANPKPEGPPSDRYLDLILRGAREHGLP 76 (83)
T ss_dssp SEEEEEEEEEETTCEEEEEEEEEESSEEE----HHHHHHHHHHHHHCT--
T ss_pred CEEEEEEEEEcCCCCEEEEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 345556777777886666555444 5667778888885
Done!