Query 036055
Match_columns 105
No_of_seqs 116 out of 383
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 15:07:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036055.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036055hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n9z_C Adrenodoxin; cytochrome 99.8 1.6E-22 5.4E-27 142.5 0.8 78 19-97 2-79 (123)
2 2bt6_A Adrenodoxin 1; rutheniu 99.8 3.6E-20 1.2E-24 125.3 7.1 76 19-97 3-80 (108)
3 3hui_A Ferredoxin; cytochrome 99.8 1.1E-19 3.8E-24 128.5 7.2 79 17-97 16-94 (126)
4 3lxf_A Ferredoxin; iron, iron- 99.8 6E-19 2E-23 119.9 8.7 73 23-97 1-73 (104)
5 2y5c_A Adrenodoxin-like protei 99.8 3.8E-19 1.3E-23 120.7 7.7 76 19-97 2-77 (109)
6 1xlq_A Putidaredoxin, PDX; [2F 99.8 2.3E-18 7.9E-23 115.9 7.9 75 23-99 1-75 (106)
7 1uwm_A Ferredoxin VI, FDVI; el 99.7 6.1E-18 2.1E-22 113.8 7.1 74 23-98 1-74 (106)
8 1b9r_A Protein (terpredoxin); 99.7 3.9E-18 1.3E-22 114.6 3.8 72 23-96 1-72 (105)
9 2wlb_A ETP1-FD, electron trans 99.7 2E-16 6.9E-21 105.9 6.7 75 21-98 2-76 (103)
10 3ah7_A [2Fe-2S]ferredoxin; [2F 99.6 4E-16 1.4E-20 106.1 6.6 73 22-98 1-76 (113)
11 1i7h_A Ferredoxin; 2Fe-2S,elec 99.5 7E-14 2.4E-18 94.9 6.7 72 22-97 1-75 (111)
12 1l5p_A Ferredoxin; [2Fe-2S] cl 99.4 1.9E-13 6.5E-18 90.3 5.8 68 23-96 1-68 (93)
13 1jq4_A Methane monooxygenase c 99.0 8.5E-11 2.9E-15 77.7 1.5 59 21-83 3-61 (98)
14 1krh_A Benzoate 1,2-dioxygenas 99.0 2E-10 6.9E-15 88.3 3.6 70 21-96 2-71 (338)
15 1frr_A Ferredoxin I; electron 98.8 4.1E-09 1.4E-13 68.7 4.7 56 22-82 1-56 (95)
16 1czp_A Ferredoxin I; [2Fe-2S] 98.7 1.4E-08 4.9E-13 67.0 5.2 56 23-82 3-59 (98)
17 1a70_A Ferredoxin; iron-sulfur 98.7 2.9E-08 9.8E-13 65.6 5.4 55 23-82 3-57 (97)
18 1frd_A Heterocyst [2Fe-2S] fer 98.6 5.2E-08 1.8E-12 64.0 5.2 57 22-82 2-59 (98)
19 1awd_A Ferredoxin; electron tr 98.6 3.8E-08 1.3E-12 64.5 4.5 54 24-82 2-55 (94)
20 1wri_A Ferredoxin II, ferredox 98.6 5.3E-08 1.8E-12 63.8 4.1 55 22-82 1-55 (93)
21 1iue_A Ferredoxin; electron tr 98.6 7E-08 2.4E-12 63.8 4.6 55 23-82 3-57 (98)
22 1doi_A 2Fe-2S ferredoxin; halo 98.5 2.3E-08 7.7E-13 70.3 2.1 63 16-84 21-83 (128)
23 3zyy_X Iron-sulfur cluster bin 98.3 6E-07 2E-11 77.5 5.3 57 22-84 3-59 (631)
24 1t3q_A Quinoline 2-oxidoreduct 97.3 0.00036 1.2E-08 50.5 5.7 55 19-78 7-62 (168)
25 3hrd_D Nicotinate dehydrogenas 97.2 0.00052 1.8E-08 50.2 5.1 51 24-78 5-56 (160)
26 1n62_A Carbon monoxide dehydro 96.8 0.0018 6.3E-08 47.3 5.5 50 25-78 6-56 (166)
27 1rm6_C 4-hydroxybenzoyl-COA re 96.8 0.0016 5.4E-08 47.1 4.9 46 30-78 9-55 (161)
28 1ffv_A CUTS, iron-sulfur prote 96.8 0.002 6.8E-08 47.0 5.5 50 25-78 6-56 (163)
29 2pia_A Phthalate dioxygenase r 96.6 0.0032 1.1E-07 48.1 5.5 55 20-81 235-289 (321)
30 1kf6_B Fumarate reductase iron 95.6 0.013 4.3E-07 43.4 4.4 44 33-78 24-71 (243)
31 3i9v_3 NADH-quinone oxidoreduc 95.5 0.014 4.6E-07 50.5 4.8 48 22-77 1-53 (783)
32 1vlb_A Aldehyde oxidoreductase 95.2 0.024 8.3E-07 50.2 5.4 53 22-78 1-54 (907)
33 1dgj_A Aldehyde oxidoreductase 94.7 0.026 8.8E-07 50.1 4.1 53 22-78 1-54 (907)
34 3c8y_A Iron hydrogenase 1; dit 94.5 0.043 1.5E-06 46.0 5.0 47 30-79 6-56 (574)
35 3nvw_A Xanthine dehydrogenase/ 94.2 0.026 8.9E-07 41.4 2.7 49 25-77 5-55 (164)
36 2w3s_A Xanthine dehydrogenase; 92.8 0.078 2.7E-06 43.8 3.7 48 25-76 3-51 (462)
37 2bs2_B Quinol-fumarate reducta 92.7 0.2 6.8E-06 36.9 5.4 44 33-78 24-71 (241)
38 2h88_B Succinate dehydrogenase 92.0 0.21 7.3E-06 37.2 4.9 45 33-79 31-80 (252)
39 3vr8_B Iron-sulfur subunit of 90.8 0.53 1.8E-05 36.7 6.1 44 34-79 56-104 (282)
40 1wxm_A A-RAF proto-oncogene se 89.8 0.47 1.6E-05 31.7 4.4 41 24-77 9-53 (86)
41 1c1y_B Proto-onkogene serine/t 88.8 0.48 1.6E-05 31.1 3.7 27 24-50 3-29 (77)
42 2l05_A Serine/threonine-protei 86.6 0.79 2.7E-05 31.2 3.9 26 24-49 19-44 (95)
43 2al3_A TUG long isoform; TUG U 86.1 0.5 1.7E-05 31.7 2.7 37 18-55 6-46 (90)
44 1rrb_A RAF-1 RBD, RAF proto-on 85.4 1.4 4.8E-05 30.5 4.7 41 24-77 20-64 (107)
45 3ny5_A Serine/threonine-protei 84.1 1.2 4.3E-05 30.2 3.9 43 23-78 14-60 (96)
46 3unc_A Xanthine dehydrogenase/ 83.9 0.69 2.4E-05 42.8 3.4 49 25-77 6-56 (1332)
47 3u7z_A Putative metal binding 83.9 1.1 3.7E-05 30.4 3.6 37 17-54 3-41 (101)
48 2wdq_B Succinate dehydrogenase 81.4 1 3.5E-05 32.8 2.9 45 33-79 21-70 (238)
49 1y56_A Hypothetical protein PH 75.5 2.4 8.1E-05 33.9 3.6 52 24-78 15-68 (493)
50 3zyv_A AOH1; oxidoreductase, m 74.7 2.7 9.3E-05 38.8 4.2 49 25-77 10-60 (1335)
51 3kdv_A DDRB, DNA damage respon 74.3 3.2 0.00011 31.0 3.8 36 21-56 6-41 (184)
52 1uh6_A Ubiquitin-like 5; beta- 69.9 5.1 0.00018 26.7 3.7 41 15-55 21-65 (100)
53 3v6c_B Ubiquitin; structural g 59.1 12 0.00042 23.0 3.8 44 12-55 7-54 (91)
54 1mby_A SAK, serine/threonine k 57.5 7.8 0.00027 25.9 2.7 32 6-37 25-56 (88)
55 4hcn_B Polyubiquitin, ubiquiti 57.1 8.5 0.00029 24.3 2.8 43 13-55 13-59 (98)
56 3nct_A Protein PSIB; DNA bindi 46.5 5.6 0.00019 28.8 0.7 13 2-14 58-70 (144)
57 2gow_A HCG-1 protein, ubiquiti 46.0 26 0.00088 23.9 4.0 31 17-47 12-42 (125)
58 1wgr_A Growth factor receptor- 41.6 37 0.0013 22.7 4.1 28 24-51 11-38 (100)
59 3dbh_I NEDD8; cell cycle, acti 40.6 44 0.0015 19.8 4.1 36 20-55 10-49 (88)
60 2gag_A Heterotetrameric sarcos 39.4 42 0.0014 29.4 5.2 55 19-77 17-79 (965)
61 3plu_A Ubiquitin-like modifier 39.3 29 0.00098 22.9 3.3 38 18-55 17-58 (93)
62 1nki_A Probable fosfomycin res 37.0 68 0.0023 19.8 4.8 31 23-53 97-127 (135)
63 1v2y_A 3300001G02RIK protein; 36.4 38 0.0013 22.4 3.6 27 21-47 6-32 (105)
64 1fs1_B SKP1, cyclin A/CDK2-ass 35.7 32 0.0011 23.3 3.2 20 22-41 1-20 (141)
65 1xvq_A Thiol peroxidase; thior 35.7 25 0.00086 23.5 2.6 36 4-39 6-41 (175)
66 1lr0_A TOLA protein; domain-sw 35.2 56 0.0019 22.1 4.4 42 6-49 40-83 (129)
67 3qbx_A Anhydro-N-acetylmuramic 31.2 42 0.0014 27.2 3.6 30 22-51 166-195 (371)
68 2kmm_A Guanosine-3',5'-BIS(dip 31.0 43 0.0015 19.4 2.9 27 25-53 3-29 (73)
69 3m62_B UV excision repair prot 30.8 34 0.0012 21.9 2.6 59 22-80 1-76 (106)
70 3mtn_B UBA80, ubcep1, ubiquiti 30.0 56 0.0019 19.0 3.3 33 23-55 4-40 (85)
71 2dzi_A Ubiquitin-like protein 29.7 57 0.0019 18.9 3.3 36 20-55 5-44 (81)
72 3ewl_A Uncharacterized conserv 29.4 26 0.00088 21.9 1.7 27 16-42 1-27 (142)
73 2yzh_A Probable thiol peroxida 28.3 66 0.0023 21.0 3.7 33 10-42 15-47 (171)
74 1wj4_A KIAA0794 protein; UBX d 26.7 1.2E+02 0.004 20.3 4.8 46 3-48 18-69 (124)
75 3u30_A Ubiquitin, linear DI-ub 26.4 42 0.0014 22.9 2.5 41 15-55 13-57 (172)
76 3erw_A Sporulation thiol-disul 26.2 56 0.0019 19.9 2.9 28 14-42 7-34 (145)
77 3hvz_A Uncharacterized protein 25.9 51 0.0018 20.6 2.7 27 24-52 7-33 (78)
78 3fkf_A Thiol-disulfide oxidore 25.8 83 0.0028 19.2 3.7 28 21-49 114-141 (148)
79 4dwf_A HLA-B-associated transc 25.3 67 0.0023 19.3 3.1 34 22-55 5-42 (90)
80 1j8c_A Ubiquitin-like protein 25.2 99 0.0034 20.5 4.2 35 20-55 30-68 (125)
81 3g12_A Putative lactoylglutath 25.2 56 0.0019 20.5 2.8 20 25-44 105-124 (128)
82 2wyq_A HHR23A, UV excision rep 25.1 68 0.0023 18.8 3.1 27 21-47 4-30 (85)
83 3fw2_A Thiol-disulfide oxidore 25.0 85 0.0029 19.7 3.7 27 21-48 116-142 (150)
84 1ttn_A DC-UBP, dendritic cell- 24.9 65 0.0022 20.4 3.1 34 22-55 23-60 (106)
85 3lns_A Benzaldehyde dehydrogen 24.8 43 0.0015 26.8 2.6 32 40-79 217-248 (457)
86 2rd1_A Putative outer membrane 24.7 70 0.0024 19.8 3.1 27 15-41 20-46 (62)
87 2k57_A Putative lipoprotein; s 24.6 89 0.003 19.2 3.5 28 14-41 19-46 (61)
88 2lxa_A Ubiquitin-like protein 24.5 30 0.001 21.9 1.4 26 22-47 1-28 (87)
89 4ajy_C Transcription elongatio 24.4 65 0.0022 20.2 3.0 20 22-41 1-20 (97)
90 1wx7_A Ubiquilin 3; ubiquitin- 24.3 82 0.0028 19.8 3.5 36 19-55 14-53 (106)
91 1uoy_A Bubble protein; exudate 24.3 19 0.00067 22.5 0.4 11 65-75 46-57 (64)
92 1zzo_A RV1677; thioredoxin fol 24.3 1.2E+02 0.0041 18.0 4.6 20 21-40 101-120 (136)
93 3r31_A BADH, betaine aldehyde 24.1 43 0.0015 27.5 2.5 32 40-79 239-270 (517)
94 2rb6_A Uncharacterized protein 24.0 74 0.0025 19.6 3.1 27 15-41 20-46 (61)
95 4e4g_A Methylmalonate-semialde 24.0 43 0.0015 27.5 2.5 32 40-79 251-282 (521)
96 3vdz_A Ubiquitin-40S ribosomal 24.0 1.2E+02 0.0041 19.4 4.3 35 21-55 34-72 (111)
97 2l32_A Small archaeal modifier 23.4 1.1E+02 0.0037 18.7 3.8 32 25-56 3-34 (74)
98 1wwt_A Threonyl-tRNA synthetas 23.3 1.2E+02 0.0042 18.3 4.1 27 25-53 12-39 (88)
99 3u99_A Diheme cytochrome C; cy 23.3 12 0.00041 26.7 -0.8 14 66-80 17-30 (148)
100 1lu4_A Soluble secreted antige 23.3 1.3E+02 0.0044 18.0 4.2 17 22-38 100-116 (136)
101 3ros_A NAD-dependent aldehyde 23.2 45 0.0015 27.1 2.4 32 40-79 212-243 (484)
102 3p7x_A Probable thiol peroxida 23.1 49 0.0017 21.7 2.3 32 11-42 15-46 (166)
103 1wgh_A Ubiquitin-like 3, HCG-1 23.1 82 0.0028 21.1 3.4 26 22-47 16-41 (116)
104 2l4d_A SCO1/SENC family protei 23.1 23 0.00078 21.6 0.6 7 67-74 13-19 (110)
105 2jsy_A Probable thiol peroxida 22.9 42 0.0014 21.7 1.9 28 11-38 13-40 (167)
106 2wb7_A PT26-6P; extra chromoso 22.8 50 0.0017 28.2 2.8 40 3-42 66-109 (526)
107 3hdc_A Thioredoxin family prot 22.7 54 0.0019 21.0 2.4 33 10-42 9-41 (158)
108 3phx_B Ubiquitin-like protein 22.2 90 0.0031 18.1 3.2 32 24-55 6-41 (79)
109 4f98_A Hypothetical protein; P 22.2 84 0.0029 19.8 3.1 16 24-39 44-59 (69)
110 2jn0_A Hypothetical lipoprotei 22.0 1E+02 0.0035 18.9 3.5 29 14-42 19-47 (61)
111 1wyw_B Ubiquitin-like protein 21.8 76 0.0026 19.7 2.9 36 20-55 19-58 (97)
112 2fwt_A DHC, diheme cytochrome 21.7 15 0.00051 25.5 -0.6 13 66-79 11-23 (125)
113 2l5l_A Thioredoxin; structural 21.5 1.4E+02 0.0047 18.7 4.2 29 21-49 92-121 (136)
114 2lrn_A Thiol:disulfide interch 21.5 99 0.0034 19.4 3.5 27 22-49 110-136 (152)
115 1e0g_A Membrane-bound lytic mu 21.4 35 0.0012 18.1 1.1 19 37-55 5-23 (48)
116 3k2w_A Betaine-aldehyde dehydr 21.4 44 0.0015 27.1 2.1 32 40-79 238-269 (497)
117 3v4c_A Aldehyde dehydrogenase 21.2 41 0.0014 27.5 1.9 32 40-79 265-298 (528)
118 3n3k_B Ubiquitin; hydrolase, p 21.1 60 0.0021 19.0 2.2 33 23-55 4-40 (85)
119 1wy8_A NP95-like ring finger p 20.9 1E+02 0.0036 18.3 3.3 36 20-55 5-46 (89)
120 4gym_A Glyoxalase/bleomycin re 20.5 1.1E+02 0.0037 19.2 3.5 17 22-38 115-131 (149)
121 1ndd_A NEDD8, protein (ubiquit 20.4 1E+02 0.0036 17.2 3.1 32 24-55 2-37 (76)
122 2hj8_A Interferon-induced 17 k 20.1 93 0.0032 18.8 3.0 34 22-55 4-41 (88)
No 1
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A
Probab=99.84 E-value=1.6e-22 Score=142.47 Aligned_cols=78 Identities=19% Similarity=0.236 Sum_probs=17.2
Q ss_pred cCcceEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccccCCCCChHHHHHHHh
Q 036055 19 AYRIVHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLDRLPPRSYEEEYVLKR 97 (105)
Q Consensus 19 ~~~M~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~klp~~~e~E~dMLd~ 97 (105)
.++|++|||+++||.+++|++..|+|||++|++|||+....+.+.|.+.| +||||+|.++|.++|++++++|.+||+.
T Consensus 2 ~~~~v~Vtf~~~~G~~~~v~~~~G~tLl~aa~~~gi~i~g~~~CgG~g~C-gtC~v~v~~~~~~~l~~~~~~E~~~L~~ 79 (123)
T 3n9z_C 2 SEDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLAC-STCHLIFEDHIYEKLDAITDEENDMLDL 79 (123)
T ss_dssp -----------------------------------------CTTCSSSSC-STTBC--------------CHHHHHHCC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCCCCEe-CCCeeEEeccccccCCCCChHHHhhhcc
Confidence 46899999999999999999999999999999999962101344444556 5999999999999999999999999975
No 2
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=99.81 E-value=3.6e-20 Score=125.32 Aligned_cols=76 Identities=21% Similarity=0.265 Sum_probs=65.4
Q ss_pred cCcceEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccc--cCCCccccccCceeEEeCccccccCCCCChHHHHHHH
Q 036055 19 AYRIVHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPAS--HRLEEIDACSVECEVNIAQEWLDRLPPRSYEEEYVLK 96 (105)
Q Consensus 19 ~~~M~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~--~~i~gi~~CGATCHVyVd~ew~~klp~~~e~E~dMLd 96 (105)
..+|++|+|+++||.+++|++..|+|||++|++|||+. . +.+.+.|.| +||||+|.+.|++++++++++|.+||+
T Consensus 3 ~~~m~~V~~~~~~g~~~~v~~~~g~tLL~aa~~~gi~i--~~~~~Cgg~G~C-gtC~v~v~~g~~~~l~~~~~~E~~~L~ 79 (108)
T 2bt6_A 3 SGDKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDI--DGFGACEGTLAC-STCHLIFEQHIFEKLEAITDEENDMLD 79 (108)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTCBHHHHHHHTTCCC--TTTTTTSSSSSB-STTEEECCHHHHTTSCCCCHHHHHHHT
T ss_pred CCceEEEEEECCCCCEEEEEECCCChHHHHHHHcCCCC--CcccCCCCCcCc-CCCEEEECccccccCCCCCHHHHHHHh
Confidence 35699999999999999999999999999999999952 2 334444557 499999999999999999999999998
Q ss_pred h
Q 036055 97 R 97 (105)
Q Consensus 97 ~ 97 (105)
.
T Consensus 80 ~ 80 (108)
T 2bt6_A 80 L 80 (108)
T ss_dssp T
T ss_pred C
Confidence 5
No 3
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=99.79 E-value=1.1e-19 Score=128.52 Aligned_cols=79 Identities=18% Similarity=0.269 Sum_probs=68.2
Q ss_pred cccCcceEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccccCCCCChHHHHHHH
Q 036055 17 KVAYRIVHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLDRLPPRSYEEEYVLK 96 (105)
Q Consensus 17 ~~~~~M~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~klp~~~e~E~dMLd 96 (105)
-+.++||+|||++++|.+++|++..|+|||++|+++||++ +.+.+.|.|.| +||||+|.+.|.+++++++++|.+||+
T Consensus 16 ~~~~~M~~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~g-i~~~C~G~G~C-gtC~v~v~~G~~~~l~~~~~~E~~~L~ 93 (126)
T 3hui_A 16 PRGSHMAKINFVDHTGETRTVEVEEGATVMEAAIRNAIPG-VEAECGGACAC-ATCHVYVDEAWREKVGGPSPMEEDMLD 93 (126)
T ss_dssp CTTCSEEEEEEECTTSCEEEEEEETTSBHHHHHHTTTCTT-CCCTTSSSSCC-STTEEEECGGGHHHHCCCCHHHHHHHT
T ss_pred CCCCCceEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCC-CccCCCCCCCC-CCCEEEECCCcccccCCCCHHHhhhcC
Confidence 3567899999999999999999999999999999999973 22334444556 599999999999999999999999998
Q ss_pred h
Q 036055 97 R 97 (105)
Q Consensus 97 ~ 97 (105)
.
T Consensus 94 ~ 94 (126)
T 3hui_A 94 F 94 (126)
T ss_dssp T
T ss_pred c
Confidence 4
No 4
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=99.78 E-value=6e-19 Score=119.86 Aligned_cols=73 Identities=25% Similarity=0.390 Sum_probs=63.8
Q ss_pred eEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccccCCCCChHHHHHHHh
Q 036055 23 VHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLDRLPPRSYEEEYVLKR 97 (105)
Q Consensus 23 ~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~klp~~~e~E~dMLd~ 97 (105)
++|||+++||.+++|++..|+|||++|.++||++ +.+.+.|.|.| +||||+|.+.|.+++++++++|.+||+.
T Consensus 1 ~~vt~~~~~G~~~~~~~~~g~tll~a~~~~gi~~-i~~~C~G~G~C-gtC~v~v~~g~~~~l~~~~~~e~~~L~~ 73 (104)
T 3lxf_A 1 TAILVTTRDGTRTEIQAEPGLSLMEALRDAGIDE-LLALCGGCCSC-ATCHVLVAPAFADRLPALSGDENDLLDS 73 (104)
T ss_dssp CEEEEECTTSCEEEEECCTTSBHHHHHHHTTCTT-CCCTTCSSSSC-STTEEEECGGGGGGSCCCCHHHHHHHHT
T ss_pred CEEEEEeCCCCEEEEEECCCChHHHHHHHcCCCC-CCcCCCCCCCC-CCCEEEECCcccccCCCCCHHHHHHhcc
Confidence 5899999999999999999999999999999973 22334444567 4999999999999999999999999986
No 5
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=99.78 E-value=3.8e-19 Score=120.68 Aligned_cols=76 Identities=28% Similarity=0.441 Sum_probs=65.4
Q ss_pred cCcceEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccccCCCCChHHHHHHHh
Q 036055 19 AYRIVHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLDRLPPRSYEEEYVLKR 97 (105)
Q Consensus 19 ~~~M~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~klp~~~e~E~dMLd~ 97 (105)
.++|++|+|++++|.+++|++..|+|||++|++|||+. .+.+.+.|.| +||||+|.+.|.+++++++++|.++|+.
T Consensus 2 ~~~m~~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~i--~~~C~g~G~C-gtC~v~v~~g~~~~l~~~~~~E~~~L~~ 77 (109)
T 2y5c_A 2 ASDVVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDL--EGACEASLAC-STCHVYVSEDHLDLLPPPEEREDDMLDM 77 (109)
T ss_dssp -CCEEEEEEECTTSCEEEEEEETTCBHHHHHHHTTCCC--CCTTSSSSSC-CTTEEEECHHHHTTSCCCCHHHHHHHHT
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCC--CcCCCCCcCc-CccEEEECCcchhhcCCCCHHHHHHHhc
Confidence 46799999999999999999999999999999999952 2334333456 4999999999999999999999999984
No 6
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=99.75 E-value=2.3e-18 Score=115.87 Aligned_cols=75 Identities=19% Similarity=0.372 Sum_probs=63.8
Q ss_pred eEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccccCCCCChHHHHHHHhhh
Q 036055 23 VHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLDRLPPRSYEEEYVLKRIS 99 (105)
Q Consensus 23 ~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~klp~~~e~E~dMLd~~~ 99 (105)
|+|+|+++||.+++|++..|+|||++|.+|||++ +.+.+.+.|.| +||||+|.+.|++++++++++|.++|+...
T Consensus 1 ~~V~~~~~~g~~~~~~~~~g~tlLeaa~~~gi~~-i~~~C~g~G~C-gtC~v~v~~g~~~~l~~~~~~e~~~L~~~~ 75 (106)
T 1xlq_A 1 SKVVYVSHDGTRRELDVADGVSLMQAAVSNGIYD-IVGDCGGSASC-ATCHVYVNEAFTDKVPAANEREIGMLESVT 75 (106)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHTTCTT-SCCTTCSSSSS-CTTEEEECTTTGGGSCCCCHHHHHHHTTCS
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCC-CCcCCCCCccc-CcCEEEECCcccccCCCCCHHHHHHhhccc
Confidence 6899999999999999999999999999999963 22333333456 599999999999999999999999998654
No 7
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=99.73 E-value=6.1e-18 Score=113.78 Aligned_cols=74 Identities=18% Similarity=0.359 Sum_probs=63.2
Q ss_pred eEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccccCCCCChHHHHHHHhh
Q 036055 23 VHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLDRLPPRSYEEEYVLKRI 98 (105)
Q Consensus 23 ~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~klp~~~e~E~dMLd~~ 98 (105)
|+|+|++++|.+++|++..|+|||++|.+|||++ +.+.+.+.|.| +||||+|.+.|++++++++++|.+||+..
T Consensus 1 ~~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~~-i~~~C~g~G~C-gtC~v~v~~g~~~~l~~~~~~e~~~L~~~ 74 (106)
T 1uwm_A 1 AKIIFIEHNGTRHEVEAKPGLTVMEAARDNGVPG-IDADCGGACAC-STCHAYVDPAWVDKLPKALPTETDMIDFA 74 (106)
T ss_dssp CEEEEECTTCCEEEEECCTTSBHHHHHHTTTCTT-CCCTTSSSSSS-CTTEEEECHHHHTTSCCCCHHHHHHHTTS
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCC-cccCCCCCCCc-CcCEEEECCcccccCCCCCHHHHHHhcCc
Confidence 6899999999999999999999999999999963 22233333446 59999999999999999999999999865
No 8
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=99.71 E-value=3.9e-18 Score=114.56 Aligned_cols=72 Identities=17% Similarity=0.327 Sum_probs=62.4
Q ss_pred eEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccccCCCCChHHHHHHH
Q 036055 23 VHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLDRLPPRSYEEEYVLK 96 (105)
Q Consensus 23 ~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~klp~~~e~E~dMLd 96 (105)
|+|+|++++|.+++|++..|+|||++|.+|||++ +.+.+.|.|.|| ||||+|.+.|++++++++++|.++|+
T Consensus 1 ~~V~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~~-i~~~C~g~G~Cg-tC~v~v~~G~~~~l~~~~~~e~~~L~ 72 (105)
T 1b9r_A 1 PRVVFIDEQSGEYAVDAQDGQSLMEVATQNGVPG-IVAECGGSCVCA-TCRIEIEDAWVEIVGEANPDENDLLQ 72 (105)
T ss_dssp CEEEECCTTTSCEEEECCTTCCTTHHHHHHTCCC-CCCSSTTSSCCC-CCCCEECTTTHHHHTCCCTTHHHHHH
T ss_pred CEEEEEeCCCCEEEEEECCCChHHHHHHHcCCCC-cCcCCCCCCCcC-cCEEEECCcccccCCCCCHHHHHHhh
Confidence 6899999999999999999999999999999963 223343335564 99999999999999999999999998
No 9
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=99.65 E-value=2e-16 Score=105.86 Aligned_cols=75 Identities=24% Similarity=0.334 Sum_probs=64.7
Q ss_pred cceEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccccCCCCChHHHHHHHhh
Q 036055 21 RIVHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLDRLPPRSYEEEYVLKRI 98 (105)
Q Consensus 21 ~M~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~klp~~~e~E~dMLd~~ 98 (105)
++++|+|++++|..++|++..|+|||++|+++||+- .+.+.+.|.|| ||||+|...|.+++++++++|.+||+.+
T Consensus 2 ~~~~v~~~~~~g~~~~~~~~~g~tlL~a~~~~gi~i--~~~C~g~G~Cg-~C~v~v~~g~~~~~~~~~~~E~~~L~~~ 76 (103)
T 2wlb_A 2 TGIKVFFVTPEGREIMIEGNEGDSILDLAHANNIDL--EGACEGSVACS-TCHVIVDPEHYELLDPPEEDEEDMLDLA 76 (103)
T ss_dssp CCEEEEEECTTCCEEEEEECTTCBHHHHHHHTTCCC--CCTTTTSSCCS-TTEEEECHHHHHHSCCCCHHHHHHHTTB
T ss_pred CceEEEEEeCCCCEEEEEECCCCHHHHHHHHcCCCc--CcCCCCCCCcC-CCEEEECCCchhccCCCCHHHHHHHhcc
Confidence 357899999999999999999999999999999952 23344445675 9999999999999999999999999864
No 10
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=99.63 E-value=4e-16 Score=106.08 Aligned_cols=73 Identities=12% Similarity=0.176 Sum_probs=61.9
Q ss_pred ceEEEEECCCC---CEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccccCCCCChHHHHHHHhh
Q 036055 22 IVHLFAIDPDG---QKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLDRLPPRSYEEEYVLKRI 98 (105)
Q Consensus 22 M~~Itfid~DG---~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~klp~~~e~E~dMLd~~ 98 (105)
||+|||+++|| ..++|++..|+|||++|.++||+. .+.+.+.|.|| ||||+|.+.| ..+++++++|.++|+..
T Consensus 1 M~~vt~~~~~g~~~~~~~v~~~~g~tlL~aa~~~Gi~i--~~~C~g~G~Cg-tC~v~v~~G~-~~~~~~~~~e~~~L~~~ 76 (113)
T 3ah7_A 1 MPLVTFLPHEKFCPEGLTVEVKPGTNILELAHDHHIEM--ESACGGVKACT-TCHCIVRKGF-DSLEEADELEEDMLDKA 76 (113)
T ss_dssp CCEEEECCBTTTBTTCEEEECCTTCBHHHHHHHTTCCC--CCTTCSSSSCS-TTEEEEEESG-GGSCCCCHHHHHHHTTS
T ss_pred CCEEEEEcCCCcCCCCeEEEECCCCcHHHHHHHcCCCC--CcCCCCCCCcC-CCEEEEcCCc-ccCCCCCHHHHHhhhcc
Confidence 89999999999 889999999999999999999952 23343335574 9999999887 78999999999999743
No 11
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=99.48 E-value=7e-14 Score=94.87 Aligned_cols=72 Identities=21% Similarity=0.355 Sum_probs=58.6
Q ss_pred ceEEEEECCCC---CEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccccCCCCChHHHHHHHh
Q 036055 22 IVHLFAIDPDG---QKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLDRLPPRSYEEEYVLKR 97 (105)
Q Consensus 22 M~~Itfid~DG---~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~klp~~~e~E~dMLd~ 97 (105)
||+|+|+..|| +.++|++..|+|||++|.++||+- .+.+.+.|.| +||||.|.+.| ..++++++.|.++|+.
T Consensus 1 M~~i~~~~~~g~~~~~~~~~~~~g~tlL~a~~~~gi~i--~~~C~~~G~C-g~C~v~v~~G~-~~~~~~~~~e~~~L~~ 75 (111)
T 1i7h_A 1 MPKIVILPHQDLCPDGAVLEANSGETILDAALRNGIEI--EHACEKSCAC-TTCHCIVREGF-DSLPESSEQEDDMLDK 75 (111)
T ss_dssp -CEEEECCBTTTBTTCEEEECCTTCBHHHHHHHTTCCC--CCTTSSSSCC-STTEEEEEECG-GGSCCCCHHHHHHHTT
T ss_pred CCEEEEEeCCCcCCCCeEEEeCCCCcHHHHHHHcCCCC--cccCCCCCcC-CCCEEEEccCc-ccCCCCCHHHHHHhhh
Confidence 89999999988 889999999999999999999952 2233233556 49999999886 5678899999999975
No 12
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=99.43 E-value=1.9e-13 Score=90.33 Aligned_cols=68 Identities=22% Similarity=0.306 Sum_probs=55.9
Q ss_pred eEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccccCCCCChHHHHHHH
Q 036055 23 VHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLDRLPPRSYEEEYVLK 96 (105)
Q Consensus 23 ~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~klp~~~e~E~dMLd 96 (105)
.+|+ ++.||..++|++..|+|||++|+++|+++ ..+.+.|.|.|| ||||+|.. .++++++++|.++|+
T Consensus 1 ~~v~-i~~~g~~~~~~~~~g~tll~a~~~~gi~g-i~~~C~G~G~Cg-~C~v~v~~---g~~~~~~~~e~~~L~ 68 (93)
T 1l5p_A 1 GTIT-AVKGGVKKQLKFEDDQTLFTVLTEAGLMS-ADDTCQGNKACG-KCICKHVS---GKVAAAEDDEKEFLE 68 (93)
T ss_dssp CEEE-EEETTEEEEEECCTTEEHHHHHHTTTSSC-CTTSCSSSSSSC-CCEEEEEE---SCCCCCCHHHHHHHT
T ss_pred CeEE-EEeCCcEEEEEECCCChHHHHHHHcCCCc-CCcCCCCcCCcC-CCEEEECC---CcCCCCCHHHHHHhc
Confidence 3677 67899999999999999999999999963 223344345674 99999987 689999999999997
No 13
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=98.99 E-value=8.5e-11 Score=77.69 Aligned_cols=59 Identities=14% Similarity=0.205 Sum_probs=47.8
Q ss_pred cceEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCcccccc
Q 036055 21 RIVHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLDR 83 (105)
Q Consensus 21 ~M~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~k 83 (105)
+|++|+|.++||..+++++..|+|||++|+++||+- .+.+ +.|.|| ||||.|.+.+...
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i--~~~C-~~G~Cg-~C~v~v~~G~~~~ 61 (98)
T 1jq4_A 3 RVHTITAVTEDGESLRFECRSDEDVITAALRQNIFL--MSSC-REGGCA-TCKALCSEGDYDL 61 (98)
T ss_dssp CEEEEEEEETTTEEEEEEEESCCTHHHHHHHHTCCC--CCSC-CSSCCC-CCCBCEEECCCCC
T ss_pred CcEEEEEEecCCCcEEEEeCCCChHHHHHHHcCCCC--cCCC-CCCCCC-CCEEEEEcCcccc
Confidence 488999999999999999999999999999999952 1222 335675 9999997776554
No 14
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=98.99 E-value=2e-10 Score=88.31 Aligned_cols=70 Identities=17% Similarity=-0.000 Sum_probs=52.6
Q ss_pred cceEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccccCCCCChHHHHHHH
Q 036055 21 RIVHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLDRLPPRSYEEEYVLK 96 (105)
Q Consensus 21 ~M~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~klp~~~e~E~dMLd 96 (105)
.|++|+|.++||..+++++..|+|||++|.++||+- .+.+. .|.| +||||+|.+.|....| .+.|.++|+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~g~tll~a~~~~gi~i--~~~C~-~g~C-g~C~v~v~~G~~~~~~--~~~~~~~l~ 71 (338)
T 1krh_A 2 SNHQVALQFEDGVTRFICIAQGETLSDAAYRQQINI--PMDCR-EGEC-GTCRAFCESGNYDMPE--DNYIEDALT 71 (338)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCCHHHHHHHTTCCC--SCSCS-SSSS-CTTEEEEEECCEECCG--GGSCTTTCC
T ss_pred CceEEEEEEcCCCcEEEEeCCCCcHHHHHHHcCCCc--ccCCC-CcCC-CCCEEEEecCcEeccc--CccccccCC
Confidence 379999999999999999999999999999999952 22222 2556 4999999888765541 334444443
No 15
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=98.81 E-value=4.1e-09 Score=68.72 Aligned_cols=56 Identities=20% Similarity=0.213 Sum_probs=43.8
Q ss_pred ceEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccc
Q 036055 22 IVHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLD 82 (105)
Q Consensus 22 M~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~ 82 (105)
|++|+|+.+|| .+++++..|+|||++|.++||+- .+.+. .|.|| ||||.|.+....
T Consensus 1 ~~~v~~~~~~g-~~~~~~~~g~tlL~a~~~~gi~i--~~~C~-~G~Cg-~C~v~v~~G~~~ 56 (95)
T 1frr_A 1 AYKTVLKTPSG-EFTLDVPEGTTILDAAEEAGYDL--PFSCR-AGACS-SCLGKVVSGSVD 56 (95)
T ss_dssp CEEEEEEETTE-EEEEEECTTCCHHHHHHHTTCCC--CCSSS-SSSSS-TTEEEEEESCEE
T ss_pred CeEEEEEeCCC-cEEEEeCCCCcHHHHHHHcCCCC--CCCCC-CcCCC-CCEEEEEeCCcc
Confidence 46899998999 89999999999999999999952 12222 25564 999999866544
No 16
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=98.73 E-value=1.4e-08 Score=67.00 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=44.4
Q ss_pred eEEEEECCCCC-EEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccc
Q 036055 23 VHLFAIDPDGQ-KRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLD 82 (105)
Q Consensus 23 ~~Itfid~DG~-~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~ 82 (105)
.+|+|+.++|. .+++++..|+|||++|.++||.- .+.+. .|.|| ||||.|.+.+..
T Consensus 3 ~~V~~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i--~~~C~-~G~Cg-~C~v~v~~G~~~ 59 (98)
T 1czp_A 3 FKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDL--PFSCR-AGACS-TCAGKLVSGTVD 59 (98)
T ss_dssp EEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCC--CCSSS-SSSSS-TTEEEEEESCEE
T ss_pred eEEEEEeCCCCCcEEEEeCCCCCHHHHHHHcCCCc--cCCCC-CCCCC-CCeEEEccCCcC
Confidence 68999999987 78999999999999999999952 22222 35574 999999777654
No 17
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=98.67 E-value=2.9e-08 Score=65.57 Aligned_cols=55 Identities=16% Similarity=0.229 Sum_probs=42.7
Q ss_pred eEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccc
Q 036055 23 VHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLD 82 (105)
Q Consensus 23 ~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~ 82 (105)
++|+|+.++| .+++++..|+|||++|.++||+- .+.+. .|.|| ||||+|.+.+..
T Consensus 3 ~~v~~~~~~~-~~~~~~~~g~tlL~a~~~~gi~i--~~~C~-~G~Cg-~C~v~v~~G~~~ 57 (97)
T 1a70_A 3 YKVTLVTPTG-NVEFQCPDDVYILDAAEEEGIDL--PYSCR-AGSCS-SCAGKLKTGSLN 57 (97)
T ss_dssp EEEEEEETTE-EEEEEEETTSCHHHHHHHTTCCC--CCSSS-SSCSS-TTEEEEEESCEE
T ss_pred EEEEEEeCCc-eEEEEeCCCCcHHHHHHHcCCCc--ccCCC-CcCCC-CCeEEEccCCcC
Confidence 6899998888 88999999999999999999952 22222 35675 999999655443
No 18
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=98.61 E-value=5.2e-08 Score=64.01 Aligned_cols=57 Identities=16% Similarity=0.174 Sum_probs=43.1
Q ss_pred ceEEEEECCCC-CEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccc
Q 036055 22 IVHLFAIDPDG-QKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLD 82 (105)
Q Consensus 22 M~~Itfid~DG-~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~ 82 (105)
+.+|+|+.++| +.++|++..|+|||++|.++||+- .+.+. .|.|| ||||+|.+.+..
T Consensus 2 ~~~V~~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i--~~~C~-~G~Cg-~C~v~v~~G~~~ 59 (98)
T 1frd_A 2 SYQVRLINKKQDIDTTIEIDEETTILDGAEENGIEL--PFSCH-SGSCS-SCVGKVVEGEVD 59 (98)
T ss_dssp EEEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCC--CCSSS-SSSSS-TTEEEEEESCEE
T ss_pred ceEEEEEeCCCCCCEEEEeCCCCcHHHHHHHcCCCc--ccCCC-CCCCC-CCEEEEEeCCcc
Confidence 46899998886 378999999999999999999952 12222 25574 999999765443
No 19
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=98.61 E-value=3.8e-08 Score=64.49 Aligned_cols=54 Identities=22% Similarity=0.279 Sum_probs=41.6
Q ss_pred EEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccc
Q 036055 24 HLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLD 82 (105)
Q Consensus 24 ~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~ 82 (105)
+|+|+.++| .+++++..|+|||++|.++||+- .+.+. .|.|| ||||.|.+....
T Consensus 2 ~v~~~~~~g-~~~~~~~~g~tlL~a~~~~gi~i--~~~C~-~G~Cg-~C~v~v~~G~~~ 55 (94)
T 1awd_A 2 KVTLKTPSG-EETIECPEDTYILDAAEEAGLDL--PYSCR-AGACS-SCAGKVESGEVD 55 (94)
T ss_dssp EEEEEETTE-EEEEECCTTSCHHHHHHHTTCCC--CCSSS-SSSSS-TTEEEEEESCEE
T ss_pred EEEEEeCCC-cEEEEECCCCcHHHHHHHcCCCC--CcCCC-CCcCC-CCEEEEEeCCcC
Confidence 688988888 88999999999999999999942 22222 25575 999999655433
No 20
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=98.56 E-value=5.3e-08 Score=63.84 Aligned_cols=55 Identities=18% Similarity=0.157 Sum_probs=42.4
Q ss_pred ceEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccc
Q 036055 22 IVHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLD 82 (105)
Q Consensus 22 M~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~ 82 (105)
|.+|+|+.++| .+++++..|+|||++|.++| .- .+.+. .|.|| ||||+|.+....
T Consensus 1 ~~~V~~~~~~~-~~~~~~~~g~tlL~a~~~~g-~i--~~~C~-~G~Cg-~C~v~v~~G~~~ 55 (93)
T 1wri_A 1 AYKVTLKTPDG-DITFDVEPGERLIDIGSEKA-DL--PLSCQ-AGACS-TCLGKIVSGTVD 55 (93)
T ss_dssp CEEEEEEETTE-EEEEEECTTSCHHHHHHHHS-CC--CCSSS-SSSSS-TTEEEEEESCEE
T ss_pred CEEEEEEECCC-eEEEEECCCCcHHHHHHHCc-CC--CCCCC-CCCCC-CCEEEEecCccC
Confidence 57899998888 88999999999999999999 42 22222 35675 999999655433
No 21
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=98.55 E-value=7e-08 Score=63.78 Aligned_cols=55 Identities=16% Similarity=0.203 Sum_probs=42.5
Q ss_pred eEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccc
Q 036055 23 VHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLD 82 (105)
Q Consensus 23 ~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~ 82 (105)
.+|+|+.++| .+++++..|+|||++|.++|++- .+.+. .|.|| ||||+|.+.+..
T Consensus 3 ~~v~~~~~~~-~~~~~~~~g~tlL~a~~~~gi~i--~~~C~-~G~Cg-~C~v~v~~G~~~ 57 (98)
T 1iue_A 3 YNITLRTNDG-EKKIECNEDEYILDASERQNVEL--PYSCR-GGSCS-TCAAKLVEGEVD 57 (98)
T ss_dssp EEEEEEETTE-EEEEEEETTSCHHHHHHHTTCCC--CCSSC-SSSSS-TTEEEEEESCEE
T ss_pred EEEEEEeCCC-eEEEEeCCCCcHHHHHHHcCCCC--CCCCC-CCcCC-CCEEEEeeCCcc
Confidence 5789998877 88999999999999999999942 22222 35575 999999666544
No 22
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Probab=98.54 E-value=2.3e-08 Score=70.30 Aligned_cols=63 Identities=14% Similarity=0.091 Sum_probs=47.4
Q ss_pred CcccCcceEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccccC
Q 036055 16 AKVAYRIVHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLDRL 84 (105)
Q Consensus 16 ~~~~~~M~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~kl 84 (105)
...+.+|++|++ ..+| .+++++..|+|||++|.++|++- .+.+ +.|.|| ||+|.|.+.+....
T Consensus 21 ~~~f~~m~~i~i-~~~g-~~~v~v~~g~tlL~aa~~~Gi~i--~~~C-~~G~Cg-tC~v~v~~G~v~~~ 83 (128)
T 1doi_A 21 DDVFGEASDMDL-DDED-YGSLEVNEGEYILEAAEAQGYDW--PFSC-RAGACA-NCAAIVLEGDIDMD 83 (128)
T ss_dssp SCHHHHHHHSCC-CTTT-EEEEECCTTSCHHHHHHHTTCCC--CCSS-SSSSSS-TTEEEEEESCEEEC
T ss_pred ccccccccEEEE-EeCC-cEEEEECCCCcHHHHHHHcCCCC--ccCC-CccCCC-CCEeEEecCCcCch
Confidence 345567999987 7888 34899999999999999999953 1222 235575 99999988876643
No 23
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=98.29 E-value=6e-07 Score=77.54 Aligned_cols=57 Identities=16% Similarity=0.212 Sum_probs=45.5
Q ss_pred ceEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCccccccC
Q 036055 22 IVHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWLDRL 84 (105)
Q Consensus 22 M~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~~kl 84 (105)
|++|+|. ++| +++++..|+|||++|.++||+ ..+.+.|.|.|| ||||+|.+.|.+..
T Consensus 3 m~~V~~~-~sg--~~v~v~~G~tLLeAa~~aGi~--ip~~C~G~G~CG-tC~v~V~~G~v~~~ 59 (631)
T 3zyy_X 3 EYKVLFK-PDQ--KEVAISENTNLMEALNLAGIN--IKTVCGGAGTCG-KCLVRVVDGQKRVE 59 (631)
T ss_dssp CEEEEEE-TTT--EEEEECTTSCHHHHHHHHTCC--CCCSCCCSSCCS-TTEEEEEESCEEES
T ss_pred ceEEEEe-cCC--eEEEECCCCcHHHHHHHcCCC--CCcCCCCCCcCC-CCEEEEeeCccccc
Confidence 8899998 566 788999999999999999995 234455446675 99999998886543
No 24
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=97.33 E-value=0.00036 Score=50.53 Aligned_cols=55 Identities=20% Similarity=0.237 Sum_probs=39.7
Q ss_pred cCcceEEEEECCCCCEEEEEccccHHHHHHHHHC-CCCCccccCCCccccccCceeEEeCc
Q 036055 19 AYRIVHLFAIDPDGQKRPIIGLAVQTLLKALTNS-GLIDPASHRLEEIDACSVECEVNIAQ 78 (105)
Q Consensus 19 ~~~M~~Itfid~DG~~~~V~a~~G~SLMeaa~~n-Gv~g~~~~~i~gi~~CGATCHVyVd~ 78 (105)
.+.| .|+|. -||..+++++.+|+||+++++++ |+.+...+|- .|.|| +|-|.||.
T Consensus 7 ~~~m-~i~~~-ing~~~~~~v~~~~tlL~~Lr~~~gl~g~~~~C~--~G~CG-aC~V~vdG 62 (168)
T 1t3q_A 7 SQLM-RISAT-INGKPRVFYVEPRMHLADALREVVGLTGTKIGCE--QGVCG-SCTILIDG 62 (168)
T ss_dssp CCCE-EEEEE-ETTEEEEEEECTTSBHHHHHHHTTCCTTSCCSCS--SSSSC-TTEEEETT
T ss_pred CCcc-eEEEE-ECCEEEEEecCCCCcHHHHHHhcCCCCccccCCC--CCCCC-CcEEEECC
Confidence 3445 34433 48999999999999999999997 8864323332 26786 88888874
No 25
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=97.17 E-value=0.00052 Score=50.18 Aligned_cols=51 Identities=24% Similarity=0.351 Sum_probs=39.7
Q ss_pred EEEEECCCCCEEEEEccccHHHHHHHHHC-CCCCccccCCCccccccCceeEEeCc
Q 036055 24 HLFAIDPDGQKRPIIGLAVQTLLKALTNS-GLIDPASHRLEEIDACSVECEVNIAQ 78 (105)
Q Consensus 24 ~Itfid~DG~~~~V~a~~G~SLMeaa~~n-Gv~g~~~~~i~gi~~CGATCHVyVd~ 78 (105)
+|+|. -||..+++++.++.+|+++++++ |+.+...+|-. |.|| .|.|.||.
T Consensus 5 ~i~~~-vNG~~~~v~v~p~~tLLd~LR~~lgltgtk~gC~~--G~CG-ACtV~vdG 56 (160)
T 3hrd_D 5 TINLN-LNGEARSIVTEPNKRLLDLLREDFGLTSVKEGCSE--GECG-ACTVIFNG 56 (160)
T ss_dssp EEEEE-ETTEEEEEEECSSSBHHHHHHTTSCCTTSCCSSSS--SSSC-TTEEEETT
T ss_pred eEEEE-ECCEEEEEecCCCCCHHHHHHHhcCCCccccccCC--CCCC-CCEEEECC
Confidence 35553 78999999999999999999986 77554334433 6786 99999995
No 26
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=96.84 E-value=0.0018 Score=47.32 Aligned_cols=50 Identities=12% Similarity=0.183 Sum_probs=37.6
Q ss_pred EEEECCCCCEEEEEccccHHHHHHHHHC-CCCCccccCCCccccccCceeEEeCc
Q 036055 25 LFAIDPDGQKRPIIGLAVQTLLKALTNS-GLIDPASHRLEEIDACSVECEVNIAQ 78 (105)
Q Consensus 25 Itfid~DG~~~~V~a~~G~SLMeaa~~n-Gv~g~~~~~i~gi~~CGATCHVyVd~ 78 (105)
|+|. -||..+++++.+|.+|+++++++ |+.+...+|-. |.|| .|=|.||.
T Consensus 6 i~~~-vNG~~~~~~v~~~~tLLd~LR~~lgl~g~k~gC~~--G~CG-aCtV~vdG 56 (166)
T 1n62_A 6 IELT-INGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDT--SHCG-ACTVDLDG 56 (166)
T ss_dssp EEEE-ETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSS--SCSC-TTEEEETT
T ss_pred EEEE-ECCEEEEEecCCCCcHHHHHHHcCCCCccccCCCC--CCCC-CCEEEECC
Confidence 4443 48999999999999999999985 77553333322 6786 88888884
No 27
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=96.82 E-value=0.0016 Score=47.14 Aligned_cols=46 Identities=22% Similarity=0.306 Sum_probs=35.9
Q ss_pred CCCCEEEEEccccHHHHHHHHHC-CCCCccccCCCccccccCceeEEeCc
Q 036055 30 PDGQKRPIIGLAVQTLLKALTNS-GLIDPASHRLEEIDACSVECEVNIAQ 78 (105)
Q Consensus 30 ~DG~~~~V~a~~G~SLMeaa~~n-Gv~g~~~~~i~gi~~CGATCHVyVd~ 78 (105)
-||..++|++.+|.+|++++++. |+.+...+|-. |.|| .|=|.||.
T Consensus 9 vNG~~~~v~~~~~~tLL~~Lr~~~gl~g~k~gC~~--G~CG-aCtV~vdG 55 (161)
T 1rm6_C 9 LNGRAREDLVPDNMLLLDYLRETVGLTGTKQGCDG--GECG-ACTVLVDD 55 (161)
T ss_dssp ETTEEEEEEEETTCBHHHHHHHTTCCTTSCCCSSS--SSSC-TTEEEETT
T ss_pred ECCEEEEEecCCcCcHHHHHHHcCCCcccccCCCC--CCCC-CCEEEECC
Confidence 69999999999999999999997 77543333333 6786 88888875
No 28
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=96.81 E-value=0.002 Score=46.99 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=37.2
Q ss_pred EEEECCCCCEEEEEccccHHHHHHHHHC-CCCCccccCCCccccccCceeEEeCc
Q 036055 25 LFAIDPDGQKRPIIGLAVQTLLKALTNS-GLIDPASHRLEEIDACSVECEVNIAQ 78 (105)
Q Consensus 25 Itfid~DG~~~~V~a~~G~SLMeaa~~n-Gv~g~~~~~i~gi~~CGATCHVyVd~ 78 (105)
|+|. -||..+++++.+|.+|+++++++ |+.+...+|-. |.|| .|=|.||.
T Consensus 6 i~~~-vNG~~~~~~v~~~~tLLd~LR~~lgltg~k~gC~~--G~CG-aCtV~vdG 56 (163)
T 1ffv_A 6 ITVN-VNGKAQEKAVEPRTLLIHFLREELNLTGAHIGCET--SHCG-ACTVDIDG 56 (163)
T ss_dssp EEEE-ETTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSS--SCSC-TTEEEETT
T ss_pred EEEE-ECCEEEEEecCCCCcHHHHHHhcCCCcccccCCCC--CCCC-CCEEEECC
Confidence 4443 48999999999999999999985 77543233322 6786 89899984
No 29
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=96.60 E-value=0.0032 Score=48.09 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=38.4
Q ss_pred CcceEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCcccc
Q 036055 20 YRIVHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQEWL 81 (105)
Q Consensus 20 ~~M~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~ew~ 81 (105)
....+|+| ...| +++++..|+||+++|.++||+. .+.+ +.|.|| ||+|.|-+.-.
T Consensus 235 ~~~~~v~~-~~~~--~~~~~~~~~~ll~a~~~~g~~~--~~~C-~~G~Cg-~C~~~v~~G~~ 289 (321)
T 2pia_A 235 NTPFTVRL-SRSG--TSFEIPANRSILEVLRDANVRV--PSSC-ESGTCG-SCKTALCSGEA 289 (321)
T ss_dssp CCCEEEEE-TTTC--CEEEECTTSCHHHHHHHTTCCC--CCSC-SSSSSC-TTEEEEEESCE
T ss_pred CccEEEEE-eCCC--eEEEECCCCcHHHHHHHcCCCC--CCCC-CCCCCC-CCEEEEecCcc
Confidence 34556765 3444 5677889999999999999963 2223 236685 99999865433
No 30
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=95.62 E-value=0.013 Score=43.37 Aligned_cols=44 Identities=18% Similarity=0.184 Sum_probs=31.4
Q ss_pred CEEEEEccccHHHHHHHHHCC---CCC-ccccCCCccccccCceeEEeCc
Q 036055 33 QKRPIIGLAVQTLLKALTNSG---LID-PASHRLEEIDACSVECEVNIAQ 78 (105)
Q Consensus 33 ~~~~V~a~~G~SLMeaa~~nG---v~g-~~~~~i~gi~~CGATCHVyVd~ 78 (105)
..++|++..|.||+++|+.+| ++. .....+ ..|.|| +|-|.|+.
T Consensus 24 ~~~~~~~~~~~tll~al~~~~~~~~p~l~~~~~c-~~G~Cg-~C~v~v~G 71 (243)
T 1kf6_B 24 AFYEVPYDATTSLLDALGYIKDNLAPDLSYRWSC-RMAICG-SCGMMVNN 71 (243)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHTCTTCCCCCCC-SSSSSC-CCEEEETT
T ss_pred EEEEEecCCCChHHHHHHHcCcccCCCcccccCC-CCCcCC-CCEeEECC
Confidence 357899999999999999998 321 111122 237786 99999875
No 31
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=95.51 E-value=0.014 Score=50.53 Aligned_cols=48 Identities=21% Similarity=0.295 Sum_probs=35.1
Q ss_pred ceEEEEECCCCCEEEEEccccHHHHHHHHHCCCCCccccCC-----CccccccCceeEEeC
Q 036055 22 IVHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLIDPASHRL-----EEIDACSVECEVNIA 77 (105)
Q Consensus 22 M~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~~~i-----~gi~~CGATCHVyVd 77 (105)
|++|++ ||. +|+++.|.||+++|..+||.-+ +.+ ...|.|+ +|-|-|.
T Consensus 1 mv~i~i---dg~--~~~v~~g~til~a~~~~gi~ip--~~C~~~~~~~~G~C~-~C~V~v~ 53 (783)
T 3i9v_3 1 MVRVKV---NDR--IVEVPPGTSVMDAVFHAGYDVP--LFCSEKHLSPIGACR-MCLVRIG 53 (783)
T ss_dssp CEEEEC---SSC--EEEECTTCBHHHHHHHTTCCCC--CSSCCTTSCCCCCSC-CSEEEEE
T ss_pred CeEEEE---CCE--EEEeCCCChHHHHHHHhCCCcc--ccCCCCCCCCCcccC-CcEEEec
Confidence 666654 785 6888899999999999999421 212 2336685 9999995
No 32
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=95.17 E-value=0.024 Score=50.24 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=41.2
Q ss_pred ceEEEEECCCCCEEEEEccccHHHHHHHHHC-CCCCccccCCCccccccCceeEEeCc
Q 036055 22 IVHLFAIDPDGQKRPIIGLAVQTLLKALTNS-GLIDPASHRLEEIDACSVECEVNIAQ 78 (105)
Q Consensus 22 M~~Itfid~DG~~~~V~a~~G~SLMeaa~~n-Gv~g~~~~~i~gi~~CGATCHVyVd~ 78 (105)
|.+|+|. -||..++|++.++.+|++.+++. |+.+...+|-. |.|| .|=|.||.
T Consensus 1 ~~~~~~~-~ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~~--g~CG-aCtv~vdg 54 (907)
T 1vlb_A 1 MIQKVIT-VNGIEQNLFVDAEALLSDVLRQQLGLTGVKVGCEQ--GQCG-ACSVILDG 54 (907)
T ss_dssp CEEEEEE-ETTEEEEEEECTTSBHHHHHHHTTCCTTSCCSSSS--SSSC-TTEEEETT
T ss_pred CceEEEE-ECCEEEEEecCCCChHHHHHHHhcCCCeecCCCCC--CCcC-ccEEEECC
Confidence 4456665 69999999999999999999985 77554444544 6786 89999985
No 33
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=94.66 E-value=0.026 Score=50.10 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=40.6
Q ss_pred ceEEEEECCCCCEEEEEccccHHHHHHHHHC-CCCCccccCCCccccccCceeEEeCc
Q 036055 22 IVHLFAIDPDGQKRPIIGLAVQTLLKALTNS-GLIDPASHRLEEIDACSVECEVNIAQ 78 (105)
Q Consensus 22 M~~Itfid~DG~~~~V~a~~G~SLMeaa~~n-Gv~g~~~~~i~gi~~CGATCHVyVd~ 78 (105)
|.+|+|. -||..++|++..+.+|++.+++. |+.+...+|-. |.|| .|=|.||.
T Consensus 1 ~~~~~~~-~ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~~--G~CG-aCtv~vdg 54 (907)
T 1dgj_A 1 METKTLI-VNGMARRLLVSPNDLLVDVLRSQLQLTSVKVGCGK--GQCG-ACTVILDG 54 (907)
T ss_dssp CEEEECE-ETTBCCEEEECTTCBHHHHHHHTTCCTTSCCSSSS--SSSC-TTEEEETT
T ss_pred CceEEEE-ECCEEEEEecCCCCcHHHHHHHhcCCCccCCCCCC--CCcC-ceEEEECC
Confidence 4456665 69999999999999999999985 66554444444 6786 88899885
No 34
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=94.54 E-value=0.043 Score=46.00 Aligned_cols=47 Identities=19% Similarity=0.262 Sum_probs=33.6
Q ss_pred CCCCEEEEEccccHHHHHHHHHCCCCCccc---cCCCc-cccccCceeEEeCcc
Q 036055 30 PDGQKRPIIGLAVQTLLKALTNSGLIDPAS---HRLEE-IDACSVECEVNIAQE 79 (105)
Q Consensus 30 ~DG~~~~V~a~~G~SLMeaa~~nGv~g~~~---~~i~g-i~~CGATCHVyVd~e 79 (105)
.|| +.|+++.|.||+++|+++|+..+.. ..+.+ +|.|| .|-|.|+..
T Consensus 6 ing--~~v~v~~g~tiL~a~~~~gi~ip~lC~~~~~~~~~G~Cg-~C~V~v~g~ 56 (574)
T 3c8y_A 6 ING--VQFNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCE-ICTVEVEGT 56 (574)
T ss_dssp ETT--EEEEECCCCBHHHHHHHTTCCCCCSSCBTTBCCSSSCCC-TTEEEETTT
T ss_pred ECC--EEEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCcccCC-CCEEEeCCC
Confidence 478 4567899999999999999843110 01223 47797 999999875
No 35
>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A {Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A* 3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*
Probab=94.21 E-value=0.026 Score=41.42 Aligned_cols=49 Identities=27% Similarity=0.305 Sum_probs=37.7
Q ss_pred EEEECCCCCEE-EEEccccHHHHHHHHHC-CCCCccccCCCccccccCceeEEeC
Q 036055 25 LFAIDPDGQKR-PIIGLAVQTLLKALTNS-GLIDPASHRLEEIDACSVECEVNIA 77 (105)
Q Consensus 25 Itfid~DG~~~-~V~a~~G~SLMeaa~~n-Gv~g~~~~~i~gi~~CGATCHVyVd 77 (105)
|+|. -||..+ .+++.++.+|++.+++. |+.|.-.+|-. |.|| .|=|.||
T Consensus 5 i~~~-vNG~~~~~~~~~p~~~Ll~~LR~~lgltGtK~GC~~--G~CG-ACTVlvd 55 (164)
T 3nvw_A 5 LVFF-VNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGE--GGCG-ACTVMLS 55 (164)
T ss_dssp EEEE-ETTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCSS--SSSC-TTEEEEE
T ss_pred EEEE-ECCEEEEEecCCCCCCHHHHHHHHcCCCCcCCCcCC--CCCC-CCEEEEc
Confidence 4443 589885 78999999999999986 88665444543 6786 8999999
No 36
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=92.85 E-value=0.078 Score=43.78 Aligned_cols=48 Identities=29% Similarity=0.449 Sum_probs=38.1
Q ss_pred EEEECCCCCEEEE-EccccHHHHHHHHHCCCCCccccCCCccccccCceeEEe
Q 036055 25 LFAIDPDGQKRPI-IGLAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNI 76 (105)
Q Consensus 25 Itfid~DG~~~~V-~a~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyV 76 (105)
|+|. -||..+++ ++.++.+|.+.+++.|+.+...+|-. |.|| .|=|.|
T Consensus 3 ~~~~-vNg~~~~~~~~~~~~~Ll~~Lr~~~l~g~k~gC~~--G~CG-aCtV~v 51 (462)
T 2w3s_A 3 IAFL-LNGETRRVRIEDPTQSLLEWLRAEGLTGTKEGCNE--GDCG-ACTVMI 51 (462)
T ss_dssp EEEE-ETTEEEEEECSCTTCBHHHHHHHTTCTTSCCSCSS--SSSC-TTEEEE
T ss_pred EEEE-ECCEEEEEecCCCCCcHHHHHHHcCCCccCCCCCC--CCcC-CcEEEE
Confidence 4444 59999999 89999999999997788665445544 6786 888988
No 37
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=92.74 E-value=0.2 Score=36.87 Aligned_cols=44 Identities=16% Similarity=0.093 Sum_probs=29.7
Q ss_pred CEEEEEccccHHHHHHHHHCCC---C-CccccCCCccccccCceeEEeCc
Q 036055 33 QKRPIIGLAVQTLLKALTNSGL---I-DPASHRLEEIDACSVECEVNIAQ 78 (105)
Q Consensus 33 ~~~~V~a~~G~SLMeaa~~nGv---~-g~~~~~i~gi~~CGATCHVyVd~ 78 (105)
..++|++..|.||+++++..|. + ......+. .|.|| +|-|.|+.
T Consensus 24 ~~~~v~~~~~~tlL~~l~~~~~~~~~~l~~~~~c~-~g~Cg-~C~v~i~G 71 (241)
T 2bs2_B 24 QEYKIEEAPSMTIFIVLNMIRETYDPDLNFDFVCR-AGICG-SCGMMING 71 (241)
T ss_dssp EEEEEECCTTCBHHHHHHHHHHHTCTTCCCCCSSS-SSSSC-TTEEEETT
T ss_pred EEEEEeCCCCChHHHHHHHhchhcCCCCccCCCCC-CCCCC-CCEeEECC
Confidence 4577889999999999987652 1 11212232 36786 89888864
No 38
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=92.05 E-value=0.21 Score=37.25 Aligned_cols=45 Identities=20% Similarity=0.156 Sum_probs=30.8
Q ss_pred CEEEEEccc-cHHHHHHHHHCCC--CCcccc--CCCccccccCceeEEeCcc
Q 036055 33 QKRPIIGLA-VQTLLKALTNSGL--IDPASH--RLEEIDACSVECEVNIAQE 79 (105)
Q Consensus 33 ~~~~V~a~~-G~SLMeaa~~nGv--~g~~~~--~i~gi~~CGATCHVyVd~e 79 (105)
..++|++.. |.||++++++.++ ...+.. -+ ..|.|| +|-|.|+..
T Consensus 31 ~~~~v~~~~~~~tlLd~l~~~~~~~~p~l~~~~~c-~~g~Cg-~C~v~i~G~ 80 (252)
T 2h88_B 31 QTYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSC-REGICG-SCAMNIAGG 80 (252)
T ss_dssp EEEEEEGGGSCSBHHHHHHHHHHHTCTTCCCCCSC-SSSSSC-TTEEEETTE
T ss_pred EEEEEecCCCCChHHHHHHHhCcccCCCccccCCC-CCCCCC-CCEEEECCc
Confidence 468888888 9999999999873 111111 12 236786 888888764
No 39
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=90.80 E-value=0.53 Score=36.70 Aligned_cols=44 Identities=27% Similarity=0.255 Sum_probs=29.8
Q ss_pred EEEEEccc-cHHHHHHHHHCCCC-C-ccccC--CCccccccCceeEEeCcc
Q 036055 34 KRPIIGLA-VQTLLKALTNSGLI-D-PASHR--LEEIDACSVECEVNIAQE 79 (105)
Q Consensus 34 ~~~V~a~~-G~SLMeaa~~nGv~-g-~~~~~--i~gi~~CGATCHVyVd~e 79 (105)
.++|++.. |.||++++++.+.. + .+... +. .|.|| .|-|.|+..
T Consensus 56 ~~~v~v~~~~~tlLdaL~~i~~~~~ptl~~~~~C~-~G~CG-sC~V~InG~ 104 (282)
T 3vr8_B 56 KFDVDLDKCGTMVLDALIKIKNEVDPTLTFRRSCR-EGICG-SCAMNIAGE 104 (282)
T ss_pred EEEEEeCCCCCcHHHHHHhcCcccCCceeecCCCC-CCCCC-CCEEEECCE
Confidence 68899888 99999999986642 1 11111 11 16686 889998854
No 40
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=89.81 E-value=0.47 Score=31.74 Aligned_cols=41 Identities=17% Similarity=0.101 Sum_probs=31.7
Q ss_pred EEEEECCCCCEEEEEccccHHHHHHH----HHCCCCCccccCCCccccccCceeEEeC
Q 036055 24 HLFAIDPDGQKRPIIGLAVQTLLKAL----TNSGLIDPASHRLEEIDACSVECEVNIA 77 (105)
Q Consensus 24 ~Itfid~DG~~~~V~a~~G~SLMeaa----~~nGv~g~~~~~i~gi~~CGATCHVyVd 77 (105)
.|.+.-||+.+..|++.+|+||.+++ ..-|+. + ..|.||..
T Consensus 9 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~------------p-e~C~Vy~~ 53 (86)
T 1wxm_A 9 TVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLN------------Q-DCCVVYRL 53 (86)
T ss_dssp EEEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCC------------S-SSEEEEEE
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCC------------H-HHeEEEEc
Confidence 67888899999999999999987776 444552 2 46788854
No 41
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=88.78 E-value=0.48 Score=31.09 Aligned_cols=27 Identities=15% Similarity=0.085 Sum_probs=23.0
Q ss_pred EEEEECCCCCEEEEEccccHHHHHHHH
Q 036055 24 HLFAIDPDGQKRPIIGLAVQTLLKALT 50 (105)
Q Consensus 24 ~Itfid~DG~~~~V~a~~G~SLMeaa~ 50 (105)
.|.+.-||+.+..|++.+|+||.+++-
T Consensus 3 ~irvhLPn~QrT~V~VrpG~tlrdaL~ 29 (77)
T 1c1y_B 3 TIRVFLPNKQRTVVNVRNGMSLHDCLM 29 (77)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHH
T ss_pred eEEEECCCCceEEEEecCCcCHHHHHH
Confidence 366777999999999999999888763
No 42
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=86.61 E-value=0.79 Score=31.18 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=23.5
Q ss_pred EEEEECCCCCEEEEEccccHHHHHHH
Q 036055 24 HLFAIDPDGQKRPIIGLAVQTLLKAL 49 (105)
Q Consensus 24 ~Itfid~DG~~~~V~a~~G~SLMeaa 49 (105)
.|.+.-||+.+..|++.+|+||.+++
T Consensus 19 ~irvhLPNqQrT~V~VrpG~tlrdAL 44 (95)
T 2l05_A 19 IVRVFLPNKQRTVVPARCGVTVRDSL 44 (95)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHH
T ss_pred EEEEECCCCCeEEEEecCCcCHHHHH
Confidence 57788899999999999999998877
No 43
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=86.07 E-value=0.5 Score=31.69 Aligned_cols=37 Identities=14% Similarity=0.195 Sum_probs=28.8
Q ss_pred ccCcceEEEEECCCCCEEEEEccccHHHHHHH----HHCCCC
Q 036055 18 VAYRIVHLFAIDPDGQKRPIIGLAVQTLLKAL----TNSGLI 55 (105)
Q Consensus 18 ~~~~M~~Itfid~DG~~~~V~a~~G~SLMeaa----~~nGv~ 55 (105)
...-| .|+++.++|.+++|.+.++.+|.|++ ...|++
T Consensus 6 ~~~~m-~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~ 46 (90)
T 2al3_A 6 GGGGS-AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFN 46 (90)
T ss_dssp ----C-CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCC
T ss_pred cCCcc-EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 33446 89999999999999999999998865 666873
No 44
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=85.40 E-value=1.4 Score=30.55 Aligned_cols=41 Identities=20% Similarity=0.115 Sum_probs=31.8
Q ss_pred EEEEECCCCCEEEEEccccHHHHHHH----HHCCCCCccccCCCccccccCceeEEeC
Q 036055 24 HLFAIDPDGQKRPIIGLAVQTLLKAL----TNSGLIDPASHRLEEIDACSVECEVNIA 77 (105)
Q Consensus 24 ~Itfid~DG~~~~V~a~~G~SLMeaa----~~nGv~g~~~~~i~gi~~CGATCHVyVd 77 (105)
.|.+.-||..+..|++.+|+||.+++ ..-|+. + -.|.||..
T Consensus 20 ~ir~hLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~------------p-e~C~Vy~~ 64 (107)
T 1rrb_A 20 TIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQ------------P-ECCAVFRL 64 (107)
T ss_dssp EEEEECTTTCCEEEECCTTCBHHHHHHHHHHHHTCC------------T-TTEEEEEC
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCC------------H-HHceeEEc
Confidence 48888999999999999999988876 334551 2 36889954
No 45
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=84.05 E-value=1.2 Score=30.23 Aligned_cols=43 Identities=23% Similarity=0.177 Sum_probs=32.7
Q ss_pred eEEEEECCCCCEEEEEccccHHHHHHH----HHCCCCCccccCCCccccccCceeEEeCc
Q 036055 23 VHLFAIDPDGQKRPIIGLAVQTLLKAL----TNSGLIDPASHRLEEIDACSVECEVNIAQ 78 (105)
Q Consensus 23 ~~Itfid~DG~~~~V~a~~G~SLMeaa----~~nGv~g~~~~~i~gi~~CGATCHVyVd~ 78 (105)
..|.+.-||+.+..|++.+|+||.+++ ..-|+. + .+|.||...
T Consensus 14 ~~irvhLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~------------p-e~C~Vy~~~ 60 (96)
T 3ny5_A 14 PIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLI------------P-ECCAVYRIQ 60 (96)
T ss_dssp CEEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCC------------G-GGEEEEECC
T ss_pred CEEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCC------------h-HHeEEEEcc
Confidence 357788899999999999999987776 334551 2 368899763
No 46
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=83.91 E-value=0.69 Score=42.84 Aligned_cols=49 Identities=27% Similarity=0.292 Sum_probs=39.2
Q ss_pred EEEECCCCCEEEE-EccccHHHHHHHHHC-CCCCccccCCCccccccCceeEEeC
Q 036055 25 LFAIDPDGQKRPI-IGLAVQTLLKALTNS-GLIDPASHRLEEIDACSVECEVNIA 77 (105)
Q Consensus 25 Itfid~DG~~~~V-~a~~G~SLMeaa~~n-Gv~g~~~~~i~gi~~CGATCHVyVd 77 (105)
|+|. -||..+++ ++.+..+|++.+++. |+.|.-.+|-. |.|| -|=|.||
T Consensus 6 i~~~-vNg~~~~~~~~~p~~~ll~~LR~~~~ltgtk~gC~~--g~CG-aCtV~~~ 56 (1332)
T 3unc_A 6 LVFF-VNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGE--GGCG-ACTVMLS 56 (1332)
T ss_dssp EEEE-ETTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCSS--SSSC-TTEEEEE
T ss_pred EEEE-ECCEEEEeecCCCCCCHHHHHhhhcCCCCcCCCcCC--CCCC-CcEEEEe
Confidence 5554 68999986 799999999999985 88776666655 7897 7888886
No 47
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=83.86 E-value=1.1 Score=30.39 Aligned_cols=37 Identities=14% Similarity=0.111 Sum_probs=29.6
Q ss_pred cccCcceEEEEECCCCCEE--EEEccccHHHHHHHHHCCC
Q 036055 17 KVAYRIVHLFAIDPDGQKR--PIIGLAVQTLLKALTNSGL 54 (105)
Q Consensus 17 ~~~~~M~~Itfid~DG~~~--~V~a~~G~SLMeaa~~nGv 54 (105)
....|-.+|++++.+|... +|+ ..|.|||+++..+..
T Consensus 3 ~~g~k~i~i~v~~~~~~~~~~~v~-t~g~tL~dvLk~~~~ 41 (101)
T 3u7z_A 3 SEGEKHITVTVIHGDQTENVFEFD-TDAKYLGEVLESENL 41 (101)
T ss_dssp --CCEEEEEEEECTTSCEEEEEEE-ECCSBHHHHHHHTTC
T ss_pred ccceeEEEEEEEcCCCceeEEEEc-CCccHHHHHHHHcCc
Confidence 4567778999999999755 466 899999999998875
No 48
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=81.38 E-value=1 Score=32.83 Aligned_cols=45 Identities=16% Similarity=0.086 Sum_probs=29.9
Q ss_pred CEEEEEccc--cHHHHHHHHHCCC--CC-ccccCCCccccccCceeEEeCcc
Q 036055 33 QKRPIIGLA--VQTLLKALTNSGL--ID-PASHRLEEIDACSVECEVNIAQE 79 (105)
Q Consensus 33 ~~~~V~a~~--G~SLMeaa~~nGv--~g-~~~~~i~gi~~CGATCHVyVd~e 79 (105)
..++|++.. |.||+++|++.++ +. .....+. .|.|| .|-|.|+..
T Consensus 21 ~~~~v~~~~~~~~tll~~l~~~~~~~~~l~~~~~C~-~g~Cg-~C~v~v~G~ 70 (238)
T 2wdq_B 21 QDYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCR-EGVCG-SDGLNMNGK 70 (238)
T ss_dssp EEEEEECCTTCCCBHHHHHHHHHHHCTTCCCCCSSS-SSSSC-TTEEEETTE
T ss_pred EEEEeecCCCCCChHHHHHHHhcccCCCccccccCC-CCCCC-CCEEEECCE
Confidence 347788888 9999999999873 11 1111111 26676 899999754
No 49
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=75.51 E-value=2.4 Score=33.90 Aligned_cols=52 Identities=12% Similarity=0.029 Sum_probs=31.4
Q ss_pred EEEEECCCCCEEEEEccccHHHHHHHHHCCCCC-ccccCCCcccc-ccCceeEEeCc
Q 036055 24 HLFAIDPDGQKRPIIGLAVQTLLKALTNSGLID-PASHRLEEIDA-CSVECEVNIAQ 78 (105)
Q Consensus 24 ~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g-~~~~~i~gi~~-CGATCHVyVd~ 78 (105)
+|+|. -||. .+++.+|+||++++..||++- ..+-...-.+. |+..|-|-|+.
T Consensus 15 ~v~~~-~dg~--~~~~~~g~ti~~a~~~~g~~~~~~~~~~~p~g~~~~~~c~v~v~g 68 (493)
T 1y56_A 15 KVTIY-FEGK--ELEAYEGEKLPVALLANEIYWLTTSNEGRKRGAFTFGPVPMTVNG 68 (493)
T ss_dssp EEEEE-ETTE--EEEEETTCBHHHHHHHTTCCCCEECTTSCEECSSSSSCCEEBSSS
T ss_pred eEEEE-ECCE--EEEecCCCHHHHHHHHCCCceecCCCCCCCCccccceEEEEEECC
Confidence 34433 4884 477799999999999999943 11111110122 33467777764
No 50
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=74.73 E-value=2.7 Score=38.79 Aligned_cols=49 Identities=22% Similarity=0.201 Sum_probs=40.6
Q ss_pred EEEECCCCCEEEEE-ccccHHHHHHHHHC-CCCCccccCCCccccccCceeEEeC
Q 036055 25 LFAIDPDGQKRPII-GLAVQTLLKALTNS-GLIDPASHRLEEIDACSVECEVNIA 77 (105)
Q Consensus 25 Itfid~DG~~~~V~-a~~G~SLMeaa~~n-Gv~g~~~~~i~gi~~CGATCHVyVd 77 (105)
|+|. -||++.++. +.+..||++-+|++ ++.|.-.+|-+ |+|| -|-|.|.
T Consensus 10 l~F~-vNG~~v~~~~~~p~~tLl~~LR~~~~ltGTK~gC~E--G~CG-ACtV~v~ 60 (1335)
T 3zyv_A 10 LIFF-VNGKKVTERNADPEVNLLFYLRKVIRLTGTKYGCGG--GDCG-ACTVMIS 60 (1335)
T ss_dssp EEEE-ETTEEEEESSCCTTCBHHHHHHHTTCCTTSCCSCSS--SSSC-TTEEEEE
T ss_pred EEEE-ECCEEEEeCCCCcCccHHHHHhccCCCcccccccCC--CCCc-ceEEEEe
Confidence 6666 789888875 68999999999985 99887777887 7897 7888885
No 51
>3kdv_A DDRB, DNA damage response B protein; anti-parallel beta-barrel, pentamer, DNA binding protein; HET: DNA; 2.80A {Deinococcus geothermalis} PDB: 4exw_A
Probab=74.25 E-value=3.2 Score=30.96 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=33.0
Q ss_pred cceEEEEECCCCCEEEEEccccHHHHHHHHHCCCCC
Q 036055 21 RIVHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLID 56 (105)
Q Consensus 21 ~M~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g 56 (105)
.|-+|.|+++=|...+|+++.++.|++..+..|--|
T Consensus 6 tml~i~f~t~LG~~V~vdve~~~~~l~v~R~yG~~G 41 (184)
T 3kdv_A 6 TMLHIEFITDLGAKVTVDVESADKLLDVQRQYGRLG 41 (184)
T ss_dssp CCEEEEEECTTCCEEEEEESSGGGHHHHHHHHHTTT
T ss_pred ceEEEEEecCCCceEEEecCCHHHHHHHHHHhhhcC
Confidence 488999999999999999999999999999987643
No 52
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=69.87 E-value=5.1 Score=26.72 Aligned_cols=41 Identities=15% Similarity=0.107 Sum_probs=32.2
Q ss_pred CCcccCcceEEEEECCCCCEEEEEccccHHHHH----HHHHCCCC
Q 036055 15 SAKVAYRIVHLFAIDPDGQKRPIIGLAVQTLLK----ALTNSGLI 55 (105)
Q Consensus 15 ~~~~~~~M~~Itfid~DG~~~~V~a~~G~SLMe----aa~~nGv~ 55 (105)
.+..++.|.+|++.++.|..++|++....|+-+ ++...|++
T Consensus 21 ~~~~~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip 65 (100)
T 1uh6_A 21 GSEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTR 65 (100)
T ss_dssp CCSSCCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCC
T ss_pred cCCCCCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC
Confidence 455667799999999999999999988887653 34566775
No 53
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=59.14 E-value=12 Score=23.01 Aligned_cols=44 Identities=14% Similarity=0.114 Sum_probs=29.2
Q ss_pred CCCCCcccCcceEEEEECCCCCEEEEEccccHHHHHH----HHHCCCC
Q 036055 12 AAPSAKVAYRIVHLFAIDPDGQKRPIIGLAVQTLLKA----LTNSGLI 55 (105)
Q Consensus 12 ~~~~~~~~~~M~~Itfid~DG~~~~V~a~~G~SLMea----a~~nGv~ 55 (105)
+++.+.......+|++...+|..+.+++....|+-+. +...||+
T Consensus 7 ~~~~~~~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip 54 (91)
T 3v6c_B 7 HHSSGLVPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIP 54 (91)
T ss_dssp ----CCCCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred cccCCCCCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCC
Confidence 3444444455568999999999999999887777642 3445664
No 54
>1mby_A SAK, serine/threonine kinase; POLO domain, strand exchange, transferase; 2.00A {Mus musculus} SCOP: d.223.1.1
Probab=57.47 E-value=7.8 Score=25.88 Aligned_cols=32 Identities=13% Similarity=0.166 Sum_probs=26.1
Q ss_pred cceeecCCCCCcccCcceEEEEECCCCCEEEE
Q 036055 6 KQWRYTAAPSAKVAYRIVHLFAIDPDGQKRPI 37 (105)
Q Consensus 6 ~~~~~~~~~~~~~~~~M~~Itfid~DG~~~~V 37 (105)
+|+.|.+++.=.+...+..|+|.+++|+....
T Consensus 25 V~VQf~DGS~L~~~p~~~~ItYt~~~G~~t~y 56 (88)
T 1mby_A 25 VWVQFNDGSQLVMQAGVSSISYTSPDGQTTRY 56 (88)
T ss_dssp EEEEETTSCEEEEEEEEEEEEEECTTSCEEEE
T ss_pred EEEEEcCCCEEEEecCcceeEEeCCCCceEEc
Confidence 68899999966666666899999999988654
No 55
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=57.13 E-value=8.5 Score=24.31 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=26.5
Q ss_pred CCCCcccCcceEEEEECCCCCEEEEEccccHHHHH----HHHHCCCC
Q 036055 13 APSAKVAYRIVHLFAIDPDGQKRPIIGLAVQTLLK----ALTNSGLI 55 (105)
Q Consensus 13 ~~~~~~~~~M~~Itfid~DG~~~~V~a~~G~SLMe----aa~~nGv~ 55 (105)
+.++...++..+|++...+|..+.|++..-.|+.+ ++...|||
T Consensus 13 ~~~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip 59 (98)
T 4hcn_B 13 GENLYFQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 59 (98)
T ss_dssp ---------CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCC
Confidence 34556666677899999999999999988777754 23455664
No 56
>3nct_A Protein PSIB; DNA binding protein, chaperone; 2.20A {Escherichia coli}
Probab=46.46 E-value=5.6 Score=28.78 Aligned_cols=13 Identities=46% Similarity=0.659 Sum_probs=10.6
Q ss_pred CccccceeecCCC
Q 036055 2 QFFSKQWRYTAAP 14 (105)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (105)
-|||||.|.+..-
T Consensus 58 GffPVq~RfsP~~ 70 (144)
T 3nct_A 58 GFFPVQVRFTPAH 70 (144)
T ss_dssp SCSSSEEEEEETT
T ss_pred ceeeEEEEEcCCC
Confidence 4899999998654
No 57
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=45.98 E-value=26 Score=23.90 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=25.2
Q ss_pred cccCcceEEEEECCCCCEEEEEccccHHHHH
Q 036055 17 KVAYRIVHLFAIDPDGQKRPIIGLAVQTLLK 47 (105)
Q Consensus 17 ~~~~~M~~Itfid~DG~~~~V~a~~G~SLMe 47 (105)
.....+.+|+|.+.+|..+++++..-.|+.+
T Consensus 12 ~~~~~~m~I~vktl~G~~~~lev~~s~TV~~ 42 (125)
T 2gow_A 12 NVPADMINLRLILVSGKTKEFLFSPNDSASD 42 (125)
T ss_dssp SCCTTCEEEEEECTTSCEEEEEECTTSBHHH
T ss_pred CCCCCeEEEEEEeCCCCEEEEEeCCccHHHH
Confidence 3445568999999999999999998888643
No 58
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=41.60 E-value=37 Score=22.66 Aligned_cols=28 Identities=18% Similarity=0.004 Sum_probs=23.8
Q ss_pred EEEEECCCCCEEEEEccccHHHHHHHHH
Q 036055 24 HLFAIDPDGQKRPIIGLAVQTLLKALTN 51 (105)
Q Consensus 24 ~Itfid~DG~~~~V~a~~G~SLMeaa~~ 51 (105)
.|+|...||+.++|.+..++|..+++..
T Consensus 11 vvkvf~~Dgssksi~V~~~~Ta~dv~~~ 38 (100)
T 1wgr_A 11 VVKVYSEDGACRSVEVAAGATARHVCEM 38 (100)
T ss_dssp EEEEEETTSCEEEEEECTTCCHHHHHHH
T ss_pred EEEEEecCCCEEEEEECCCCcHHHHHHH
Confidence 4666779999999999999999888754
No 59
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=40.58 E-value=44 Score=19.80 Aligned_cols=36 Identities=8% Similarity=-0.048 Sum_probs=26.4
Q ss_pred CcceEEEEECCCCCEEEEEccccHHHHHH----HHHCCCC
Q 036055 20 YRIVHLFAIDPDGQKRPIIGLAVQTLLKA----LTNSGLI 55 (105)
Q Consensus 20 ~~M~~Itfid~DG~~~~V~a~~G~SLMea----a~~nGv~ 55 (105)
+...+|++...+|..+++++..-.|+.+. +...|+|
T Consensus 10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip 49 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP 49 (88)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC
Confidence 34458999999999999999887776542 2445764
No 60
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=39.43 E-value=42 Score=29.43 Aligned_cols=55 Identities=20% Similarity=0.111 Sum_probs=36.0
Q ss_pred cCcceEEEEECCCCCEEEEEccccHHHHHHHHHCCCCC-ccc---cCCC----ccccccCceeEEeC
Q 036055 19 AYRIVHLFAIDPDGQKRPIIGLAVQTLLKALTNSGLID-PAS---HRLE----EIDACSVECEVNIA 77 (105)
Q Consensus 19 ~~~M~~Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g-~~~---~~i~----gi~~CGATCHVyVd 77 (105)
-+++..|+|. -|| +++++.+|+||..++..||+.- ..+ ++-- .++.| .-|.|-|+
T Consensus 17 ~~~~~~~~~~-~dG--~~~~~~~g~tv~~aL~~~Gv~~~~~s~~~~~prg~~~~~~~c-~~~~v~v~ 79 (965)
T 2gag_A 17 INREEALSLT-VDG--AKLSAFRGDTVASALLANGVRRAGNSLYLDRPRGIFAAGVEE-PNALVTVS 79 (965)
T ss_dssp SEEEEEEEEE-ETT--EEEEEEETCBHHHHHHHTTCCBCSCCTTTCCCCBCCCSSTTC-CSCEEEEC
T ss_pred cCCCCeEEEE-ECC--EEEEecCCCHHHHHHHHcCCeEeecCCCCCCCcccccCCccC-CceEEEEc
Confidence 3555566654 678 6788899999999999999842 111 1111 11334 36899998
No 61
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=39.27 E-value=29 Score=22.90 Aligned_cols=38 Identities=13% Similarity=0.092 Sum_probs=29.0
Q ss_pred ccCcceEEEEECCCCCEEEEEccccHHHHH----HHHHCCCC
Q 036055 18 VAYRIVHLFAIDPDGQKRPIIGLAVQTLLK----ALTNSGLI 55 (105)
Q Consensus 18 ~~~~M~~Itfid~DG~~~~V~a~~G~SLMe----aa~~nGv~ 55 (105)
....|..|.+-++.|...+|++.+-.|+.+ ++-+.|+|
T Consensus 17 ~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip 58 (93)
T 3plu_A 17 RGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQ 58 (93)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCC
T ss_pred CCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCC
Confidence 345688999999999999999999888764 34566774
No 62
>1nki_A Probable fosfomycin resistance protein; potassium binding loop, manganese binding, transferase; 0.95A {Pseudomonas aeruginosa} SCOP: d.32.1.2 PDB: 1lqo_A 1lqk_A 1lqp_A 1nnr_A
Probab=36.99 E-value=68 Score=19.81 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=24.0
Q ss_pred eEEEEECCCCCEEEEEccccHHHHHHHHHCC
Q 036055 23 VHLFAIDPDGQKRPIIGLAVQTLLKALTNSG 53 (105)
Q Consensus 23 ~~Itfid~DG~~~~V~a~~G~SLMeaa~~nG 53 (105)
-.+.|.||||+..++-.....+-+.+...+-
T Consensus 97 ~~~~~~DPdG~~iel~~~~~~~~~~~~~~~~ 127 (135)
T 1nki_A 97 DSFYFLDPDGHRLEAHVGDLRSRLAACRQAP 127 (135)
T ss_dssp CEEEEECTTCCEEEEESCCHHHHHHHHHHSC
T ss_pred EEEEEECCCCCEEEEEECCchHHHHHHhcCC
Confidence 4688999999999998877777666655543
No 63
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=36.45 E-value=38 Score=22.39 Aligned_cols=27 Identities=19% Similarity=0.253 Sum_probs=23.1
Q ss_pred cceEEEEECCCCCEEEEEccccHHHHH
Q 036055 21 RIVHLFAIDPDGQKRPIIGLAVQTLLK 47 (105)
Q Consensus 21 ~M~~Itfid~DG~~~~V~a~~G~SLMe 47 (105)
.+.+|++...+|...+|+++...|+.+
T Consensus 6 ~~M~I~Vk~l~g~~~~v~V~~~~TV~d 32 (105)
T 1v2y_A 6 SGMTVRVCKMDGEVMPVVVVQNATVLD 32 (105)
T ss_dssp CSEEEEEECSSSCEEEEEECTTCBHHH
T ss_pred CcEEEEEEecCCCEEEEEECCCChHHH
Confidence 346899999999999999999888654
No 64
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=35.72 E-value=32 Score=23.32 Aligned_cols=20 Identities=10% Similarity=-0.041 Sum_probs=16.7
Q ss_pred ceEEEEECCCCCEEEEEccc
Q 036055 22 IVHLFAIDPDGQKRPIIGLA 41 (105)
Q Consensus 22 M~~Itfid~DG~~~~V~a~~ 41 (105)
|+.|+++..||.+..|+-..
T Consensus 1 m~~v~L~SsDg~~f~v~~~v 20 (141)
T 1fs1_B 1 MPSIKLQSSDGEIFEVDVEI 20 (141)
T ss_dssp -CEEEEECTTSCEEEEEGGG
T ss_pred CCeEEEEeCCCCEEEecHHH
Confidence 78899999999999997654
No 65
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=35.68 E-value=25 Score=23.46 Aligned_cols=36 Identities=8% Similarity=-0.204 Sum_probs=27.9
Q ss_pred cccceeecCCCCCcccCcceEEEEECCCCCEEEEEc
Q 036055 4 FSKQWRYTAAPSAKVAYRIVHLFAIDPDGQKRPIIG 39 (105)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~M~~Itfid~DG~~~~V~a 39 (105)
|-.|+....+....+.+.+|.+++.+.+|....+.-
T Consensus 6 ~~~~~~~~~~~~l~~G~~~P~f~l~~~~G~~v~l~~ 41 (175)
T 1xvq_A 6 LRGNAINTVGELPAVGSPAPAFTLTGGDLGVISSDQ 41 (175)
T ss_dssp CCCSBCCBSSCCCCTTSBCCCCEEECTTSCEEEGGG
T ss_pred eCCceeeecCCCCCcCCcCCCeEEECCCCCEEeHHH
Confidence 444556666777889999999999999998766543
No 66
>1lr0_A TOLA protein; domain-swapping, TONB, protein transport; 1.91A {Pseudomonas aeruginosa} SCOP: d.212.1.1
Probab=35.22 E-value=56 Score=22.06 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=26.1
Q ss_pred cceeecCCCCCcccCcceEEEEECCCCCEEEEEcc--ccHHHHHHH
Q 036055 6 KQWRYTAAPSAKVAYRIVHLFAIDPDGQKRPIIGL--AVQTLLKAL 49 (105)
Q Consensus 6 ~~~~~~~~~~~~~~~~M~~Itfid~DG~~~~V~a~--~G~SLMeaa 49 (105)
..|+||.... .-..-.+.|+ +++||+...+.+. .|...+..|
T Consensus 40 ~~~~yP~~a~-~~~~~~V~v~-l~~dG~v~~v~v~~SSG~~~lD~A 83 (129)
T 1lr0_A 40 QQWRRPPSAR-NGMSVEVLIE-MLPDGTITNASVSRSSGDKPFDSS 83 (129)
T ss_dssp HHCCCCTTCC-TTCCEEEEEE-ECTTSBEEEEEEEECCSCHHHHHH
T ss_pred HhcCCChHhc-CCCEEEEEEE-ECCCCCEEEEEEeeCCCCHHHHHH
Confidence 4688987621 1112234443 8999998888764 577766644
No 67
>3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases, HSP70, actin superfamily, anhydro-N-actetylmuramic acid binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB: 3qbw_A*
Probab=31.23 E-value=42 Score=27.17 Aligned_cols=30 Identities=13% Similarity=0.093 Sum_probs=28.1
Q ss_pred ceEEEEECCCCCEEEEEccccHHHHHHHHH
Q 036055 22 IVHLFAIDPDGQKRPIIGLAVQTLLKALTN 51 (105)
Q Consensus 22 M~~Itfid~DG~~~~V~a~~G~SLMeaa~~ 51 (105)
+.||||+.++|...-.+.-+|-.||.++.+
T Consensus 166 IaNiT~l~~~~~v~afDtGPgN~liD~~~~ 195 (371)
T 3qbx_A 166 FSNVSLLSPGKPVRGFDCGPGNVLMDAWIH 195 (371)
T ss_dssp EEEEEEECTTSCCEEEEEEESSHHHHHHHH
T ss_pred ceEEEEeCCCCCEEEEecCccHHHHHHHHH
Confidence 889999999999999999999999999976
No 68
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=31.04 E-value=43 Score=19.43 Aligned_cols=27 Identities=15% Similarity=0.082 Sum_probs=20.3
Q ss_pred EEEECCCCCEEEEEccccHHHHHHHHHCC
Q 036055 25 LFAIDPDGQKRPIIGLAVQTLLKALTNSG 53 (105)
Q Consensus 25 Itfid~DG~~~~V~a~~G~SLMeaa~~nG 53 (105)
|++.-+||... +.+.|.|+.+.|...+
T Consensus 3 i~i~~p~g~~~--~~~~g~T~~dla~~i~ 29 (73)
T 2kmm_A 3 VMVFTPKGEIK--RLPQGATALDFAYSLH 29 (73)
T ss_dssp EEEECTTCCEE--EECTTCBHHHHHHHHC
T ss_pred EEEEcCCCCEE--EcCCCCcHHHHHHHHh
Confidence 56667899865 5567999999987654
No 69
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=30.81 E-value=34 Score=21.90 Aligned_cols=59 Identities=17% Similarity=0.190 Sum_probs=34.9
Q ss_pred ceEEEEECCCCCEEEEEccccHHHHHH----HHHCCCCCc-----cccC-CC---cccccc----CceeEEeCccc
Q 036055 22 IVHLFAIDPDGQKRPIIGLAVQTLLKA----LTNSGLIDP-----ASHR-LE---EIDACS----VECEVNIAQEW 80 (105)
Q Consensus 22 M~~Itfid~DG~~~~V~a~~G~SLMea----a~~nGv~g~-----~~~~-i~---gi~~CG----ATCHVyVd~ew 80 (105)
|.+|++...+|....+++....|+.+. +...||+-. +.++ +. .+.+|| .|=|+.+...-
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~ 76 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKK 76 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC--
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCC
Confidence 568999999999999999888777643 244566410 0000 00 124566 67788887553
No 70
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=29.98 E-value=56 Score=19.03 Aligned_cols=33 Identities=12% Similarity=0.184 Sum_probs=25.2
Q ss_pred eEEEEECCCCCEEEEEccccHHHHHH----HHHCCCC
Q 036055 23 VHLFAIDPDGQKRPIIGLAVQTLLKA----LTNSGLI 55 (105)
Q Consensus 23 ~~Itfid~DG~~~~V~a~~G~SLMea----a~~nGv~ 55 (105)
.+|++...+|..+.+++..-.|+-+. +...|+|
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~ 40 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 40 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC
Confidence 47999999999999999888777543 3445664
No 71
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.68 E-value=57 Score=18.90 Aligned_cols=36 Identities=6% Similarity=-0.096 Sum_probs=26.4
Q ss_pred CcceEEEEECCCCCEEEEEccccHHHHHH----HHHCCCC
Q 036055 20 YRIVHLFAIDPDGQKRPIIGLAVQTLLKA----LTNSGLI 55 (105)
Q Consensus 20 ~~M~~Itfid~DG~~~~V~a~~G~SLMea----a~~nGv~ 55 (105)
+.+.+|++...+|...++++....|+-+. +...|++
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~ 44 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVP 44 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 34568888889999999999887776542 3556774
No 72
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=29.40 E-value=26 Score=21.86 Aligned_cols=27 Identities=7% Similarity=0.182 Sum_probs=21.1
Q ss_pred CcccCcceEEEEECCCCCEEEEEcccc
Q 036055 16 AKVAYRIVHLFAIDPDGQKRPIIGLAV 42 (105)
Q Consensus 16 ~~~~~~M~~Itfid~DG~~~~V~a~~G 42 (105)
+.+.+.+|.+++.+.+|....+.-..|
T Consensus 1 s~~G~~~p~f~l~~~~g~~~~l~~~~g 27 (142)
T 3ewl_A 1 SNAGMKAADFTYVTVHGDNSRMSRLKA 27 (142)
T ss_dssp CCTTSBCCCCEEECTTCCEEEGGGCCC
T ss_pred CCCCCcCCCCEEECCCCCEEEhhhcCC
Confidence 356788999999999998877655444
No 73
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=28.29 E-value=66 Score=21.04 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=25.9
Q ss_pred ecCCCCCcccCcceEEEEECCCCCEEEEEcccc
Q 036055 10 YTAAPSAKVAYRIVHLFAIDPDGQKRPIIGLAV 42 (105)
Q Consensus 10 ~~~~~~~~~~~~M~~Itfid~DG~~~~V~a~~G 42 (105)
...+....+.+..|.+++.+.||...++.-..|
T Consensus 15 ~~~~~~l~~g~~~P~f~l~~~~G~~~~l~~~~g 47 (171)
T 2yzh_A 15 TLVGPELKVGDRAPEAVVVTKDLQEKIVGGAKD 47 (171)
T ss_dssp EBCSCCCCTTSBCCCEEEEETTSCEEEESSCCS
T ss_pred eecCCcCCCCCcCCceEEECCCCCEeeHHHhCC
Confidence 344556788899999999999998887765555
No 74
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=26.66 E-value=1.2e+02 Score=20.33 Aligned_cols=46 Identities=17% Similarity=0.127 Sum_probs=32.2
Q ss_pred ccccceeecCCCCC----ccc--CcceEEEEECCCCCEEEEEccccHHHHHH
Q 036055 3 FFSKQWRYTAAPSA----KVA--YRIVHLFAIDPDGQKRPIIGLAVQTLLKA 48 (105)
Q Consensus 3 ~~~~~~~~~~~~~~----~~~--~~M~~Itfid~DG~~~~V~a~~G~SLMea 48 (105)
+=++||+++..+.. .+. ....+|.|.-+||.+..-....-.+|-++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~d~~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V 69 (124)
T 1wj4_A 18 VDSEILEMPPEKADGVVEGIDVNGPKAQLMLRYPDGKREQITLPEQAKLLAL 69 (124)
T ss_dssp CCCCSCSCCCCCCCCCCCCCCCSSCEEEEEEECTTSCEEEEEEETTSCHHHH
T ss_pred cChhhhhcCCCCCCCcccccCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHH
Confidence 45789999766633 222 34788999999999877777666666543
No 75
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=26.39 E-value=42 Score=22.89 Aligned_cols=41 Identities=10% Similarity=0.050 Sum_probs=27.3
Q ss_pred CCcccCcceEEEEECCCCCEEEEEccccHHHHH----HHHHCCCC
Q 036055 15 SAKVAYRIVHLFAIDPDGQKRPIIGLAVQTLLK----ALTNSGLI 55 (105)
Q Consensus 15 ~~~~~~~M~~Itfid~DG~~~~V~a~~G~SLMe----aa~~nGv~ 55 (105)
.|.....+.+|++...+|..+++++....|+-+ +....||+
T Consensus 13 ~~~~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip 57 (172)
T 3u30_A 13 GLVPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 57 (172)
T ss_dssp ------CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred CCCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 344444566899999999999999998888765 33455664
No 76
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=26.20 E-value=56 Score=19.92 Aligned_cols=28 Identities=11% Similarity=0.003 Sum_probs=19.8
Q ss_pred CCCcccCcceEEEEECCCCCEEEEEcccc
Q 036055 14 PSAKVAYRIVHLFAIDPDGQKRPIIGLAV 42 (105)
Q Consensus 14 ~~~~~~~~M~~Itfid~DG~~~~V~a~~G 42 (105)
..+.+.+.+|.+++.+.+|....+.. .|
T Consensus 7 ~~~~~g~~~p~~~l~~~~g~~~~l~~-~g 34 (145)
T 3erw_A 7 AEEKQPAVPAVFLMKTIEGEDISIPN-KG 34 (145)
T ss_dssp -----CCSCCEEEEECTTSCEEEESC-TT
T ss_pred ccccCCCcCCCceeecCCCCEEeHHH-CC
Confidence 35677888999999999999887766 55
No 77
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=25.87 E-value=51 Score=20.62 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=21.8
Q ss_pred EEEEECCCCCEEEEEccccHHHHHHHHHC
Q 036055 24 HLFAIDPDGQKRPIIGLAVQTLLKALTNS 52 (105)
Q Consensus 24 ~Itfid~DG~~~~V~a~~G~SLMeaa~~n 52 (105)
.|.+..|||.. ++.+.|.|.++.|..-
T Consensus 7 ~i~v~tP~G~~--~~lp~GaT~~D~A~~I 33 (78)
T 3hvz_A 7 EVFVFTPKGDV--ISLPIGSTVIDFAYAI 33 (78)
T ss_dssp EEEEECTTSCE--EEEETTCBHHHHHHHH
T ss_pred eEEEECCCCCE--EEecCCCCHHHHHHHh
Confidence 57889999965 5678899999998654
No 78
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=25.82 E-value=83 Score=19.25 Aligned_cols=28 Identities=14% Similarity=0.069 Sum_probs=19.5
Q ss_pred cceEEEEECCCCCEEEEEccccHHHHHHH
Q 036055 21 RIVHLFAIDPDGQKRPIIGLAVQTLLKAL 49 (105)
Q Consensus 21 ~M~~Itfid~DG~~~~V~a~~G~SLMeaa 49 (105)
.+|.+.++|+||....... ....|.+.+
T Consensus 114 ~~P~~~lid~~G~i~~~~~-~~~~l~~~l 141 (148)
T 3fkf_A 114 TLPTNILLSPTGKILARDI-QGEALTGKL 141 (148)
T ss_dssp SSSEEEEECTTSBEEEESC-CHHHHHHHH
T ss_pred CcCEEEEECCCCeEEEecC-CHHHHHHHH
Confidence 3899999999998776555 444444443
No 79
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=25.26 E-value=67 Score=19.27 Aligned_cols=34 Identities=15% Similarity=0.089 Sum_probs=25.3
Q ss_pred ceEEEEECCCCCEEEEEccccHHHHHH----HHHCCCC
Q 036055 22 IVHLFAIDPDGQKRPIIGLAVQTLLKA----LTNSGLI 55 (105)
Q Consensus 22 M~~Itfid~DG~~~~V~a~~G~SLMea----a~~nGv~ 55 (105)
+.+|++...+|..+.+++..-.|+.+. ....|++
T Consensus 5 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip 42 (90)
T 4dwf_A 5 SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIP 42 (90)
T ss_dssp EEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCC
T ss_pred EEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 458999999999999999887776543 2344664
No 80
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=25.21 E-value=99 Score=20.47 Aligned_cols=35 Identities=9% Similarity=0.003 Sum_probs=25.2
Q ss_pred CcceEEEEECCCCCEEEEEccccHHHHHH----HHHCCCC
Q 036055 20 YRIVHLFAIDPDGQKRPIIGLAVQTLLKA----LTNSGLI 55 (105)
Q Consensus 20 ~~M~~Itfid~DG~~~~V~a~~G~SLMea----a~~nGv~ 55 (105)
+.+.+|++... |...++++....|+-+. ....||+
T Consensus 30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip 68 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQ 68 (125)
T ss_dssp CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSC
T ss_pred CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 45678988888 99999999887776543 2445664
No 81
>3g12_A Putative lactoylglutathione lyase; glyoxalase, bleomycin resistance, PSI-2, NYSGXRC, structural genomics; 2.58A {Bdellovibrio bacteriovorus HD100}
Probab=25.15 E-value=56 Score=20.48 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=13.8
Q ss_pred EEEECCCCCEEEEEccccHH
Q 036055 25 LFAIDPDGQKRPIIGLAVQT 44 (105)
Q Consensus 25 Itfid~DG~~~~V~a~~G~S 44 (105)
+.|.||||+.-.+-...+.+
T Consensus 105 ~~~~DPdGn~iel~~~~~~~ 124 (128)
T 3g12_A 105 AIVLDPDGHSIELCELEGHH 124 (128)
T ss_dssp EEEECTTCCEEEEEC-----
T ss_pred EEEECCCCCEEEEEEecccc
Confidence 88999999999888776654
No 82
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=25.06 E-value=68 Score=18.83 Aligned_cols=27 Identities=15% Similarity=-0.128 Sum_probs=22.0
Q ss_pred cceEEEEECCCCCEEEEEccccHHHHH
Q 036055 21 RIVHLFAIDPDGQKRPIIGLAVQTLLK 47 (105)
Q Consensus 21 ~M~~Itfid~DG~~~~V~a~~G~SLMe 47 (105)
.+.+|++...+|..+++++..-.|+.+
T Consensus 4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~ 30 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKIRMEPDETVKV 30 (85)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHH
T ss_pred ceEEEEEEECCCCEEEEEECCCCCHHH
Confidence 356899999999999999987777654
No 83
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=25.02 E-value=85 Score=19.73 Aligned_cols=27 Identities=19% Similarity=0.082 Sum_probs=19.3
Q ss_pred cceEEEEECCCCCEEEEEccccHHHHHH
Q 036055 21 RIVHLFAIDPDGQKRPIIGLAVQTLLKA 48 (105)
Q Consensus 21 ~M~~Itfid~DG~~~~V~a~~G~SLMea 48 (105)
.+|.+.++|+||+...... ....|.+.
T Consensus 116 ~~P~~~lid~~G~i~~~~~-~~~~l~~~ 142 (150)
T 3fw2_A 116 KIPANILLSSDGKILAKNL-RGEELKKK 142 (150)
T ss_dssp SSSEEEEECTTSBEEEESC-CHHHHHHH
T ss_pred ccCeEEEECCCCEEEEccC-CHHHHHHH
Confidence 3899999999998776654 44444443
No 84
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=24.95 E-value=65 Score=20.42 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=25.5
Q ss_pred ceEEEEECCCCCEEEEEccccHHHHHH----HHHCCCC
Q 036055 22 IVHLFAIDPDGQKRPIIGLAVQTLLKA----LTNSGLI 55 (105)
Q Consensus 22 M~~Itfid~DG~~~~V~a~~G~SLMea----a~~nGv~ 55 (105)
+.+|++...+|..+.+++..-.|+.+. +...||+
T Consensus 23 ~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip 60 (106)
T 1ttn_A 23 ECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVE 60 (106)
T ss_dssp SEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCC
T ss_pred eEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcC
Confidence 447988889999999999888776553 2455664
No 85
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde dehyd adduct, covalent catalysis, mandelate racemase pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB: 3lv1_A*
Probab=24.75 E-value=43 Score=26.76 Aligned_cols=32 Identities=6% Similarity=0.033 Sum_probs=24.0
Q ss_pred cccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCcc
Q 036055 40 LAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQE 79 (105)
Q Consensus 40 ~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~e 79 (105)
..|..+|++|-++..+- +.+.|+-|+++|+++
T Consensus 217 ~~G~~i~~~aa~~l~pv--------~lElGGk~p~iV~~d 248 (457)
T 3lns_A 217 NVGKVVMQAAAKHLTPV--------VLELGGKCPLIVLPD 248 (457)
T ss_dssp HHHHHHHHHHHTTTCCE--------EEECCCCEEEEECTT
T ss_pred HHHHHHHHHHhhccCce--------EEECCCCCCCeECCC
Confidence 56899999998887642 256777888888765
No 86
>2rd1_A Putative outer membrane lipoprotein; X-RAY, NESG, Q7CQI7, STR87A, structural genomics, PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium LT2} SCOP: b.38.1.6
Probab=24.67 E-value=70 Score=19.78 Aligned_cols=27 Identities=15% Similarity=0.102 Sum_probs=22.3
Q ss_pred CCcccCcceEEEEECCCCCEEEEEccc
Q 036055 15 SAKVAYRIVHLFAIDPDGQKRPIIGLA 41 (105)
Q Consensus 15 ~~~~~~~M~~Itfid~DG~~~~V~a~~ 41 (105)
+|.+...---+.|.|.+|.++.|.-..
T Consensus 20 KP~~D~dTGm~sY~D~~G~~~qIn~dd 46 (62)
T 2rd1_A 20 KPQLDKETGMTSYTDQEGNQREINSND 46 (62)
T ss_dssp CCEEETTTTEEEEECTTSCEEEEEGGG
T ss_pred CcceeCCCCCEEEEcCCCCEEEEcHHH
Confidence 788777766799999999999987654
No 87
>2k57_A Putative lipoprotein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pseudomonas syringae PV} SCOP: b.38.1.6
Probab=24.60 E-value=89 Score=19.23 Aligned_cols=28 Identities=14% Similarity=-0.059 Sum_probs=23.0
Q ss_pred CCCcccCcceEEEEECCCCCEEEEEccc
Q 036055 14 PSAKVAYRIVHLFAIDPDGQKRPIIGLA 41 (105)
Q Consensus 14 ~~~~~~~~M~~Itfid~DG~~~~V~a~~ 41 (105)
-+|.....---+.|.|.+|.++.|.-..
T Consensus 19 gKP~~D~dTGmysY~D~~G~~~qIn~dd 46 (61)
T 2k57_A 19 DTPKYDEESGFYEFKQLDGKQTRINKDQ 46 (61)
T ss_dssp SCCEECTTTCEEEEEBTTSCEEEEETTT
T ss_pred CCccccCCCCCEEEEcCCCCEEEEcHHH
Confidence 3788877777799999999999987654
No 88
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=24.52 E-value=30 Score=21.86 Aligned_cols=26 Identities=27% Similarity=0.217 Sum_probs=20.9
Q ss_pred ceEEEEECCCCCEEEEEcc--ccHHHHH
Q 036055 22 IVHLFAIDPDGQKRPIIGL--AVQTLLK 47 (105)
Q Consensus 22 M~~Itfid~DG~~~~V~a~--~G~SLMe 47 (105)
|.+|++-+..|...+++++ ...|+.+
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~ 28 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQ 28 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHH
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHH
Confidence 6789999999999988765 6666654
No 89
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=24.37 E-value=65 Score=20.18 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=16.3
Q ss_pred ceEEEEECCCCCEEEEEccc
Q 036055 22 IVHLFAIDPDGQKRPIIGLA 41 (105)
Q Consensus 22 M~~Itfid~DG~~~~V~a~~ 41 (105)
|..|+++..||.+..|.-.+
T Consensus 1 ~~~v~L~SsDg~~F~v~r~v 20 (97)
T 4ajy_C 1 MMYVKLISSDGHEFIVKREH 20 (97)
T ss_dssp -CEEEEECTTCCEEEEEHHH
T ss_pred CeEEEEEecCCcEEEecHHH
Confidence 56899999999999988644
No 90
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=24.31 E-value=82 Score=19.81 Aligned_cols=36 Identities=6% Similarity=-0.021 Sum_probs=25.4
Q ss_pred cCcceEEEEECCCCCEEEEEccccHHHHHH----HHHCCCC
Q 036055 19 AYRIVHLFAIDPDGQKRPIIGLAVQTLLKA----LTNSGLI 55 (105)
Q Consensus 19 ~~~M~~Itfid~DG~~~~V~a~~G~SLMea----a~~nGv~ 55 (105)
.+.|.+|++...+|. +.+++..-.|+-+. +...||+
T Consensus 14 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip 53 (106)
T 1wx7_A 14 DPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAH 53 (106)
T ss_dssp CSSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCC
T ss_pred CCceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcC
Confidence 467889999999885 78988877776442 2445664
No 91
>1uoy_A Bubble protein; exudate protein, sulfur phasing, potential killer toxin; 1.5A {Penicillium brevicompactum} SCOP: g.3.19.1
Probab=24.30 E-value=19 Score=22.47 Aligned_cols=11 Identities=18% Similarity=0.749 Sum_probs=8.1
Q ss_pred ccccc-CceeEE
Q 036055 65 IDACS-VECEVN 75 (105)
Q Consensus 65 i~~CG-ATCHVy 75 (105)
|-+|| +|||--
T Consensus 46 iqdc~~stc~g~ 57 (64)
T 1uoy_A 46 VQDCGSSSCKGT 57 (64)
T ss_dssp EEECSSSCCEEE
T ss_pred eeecCccccccc
Confidence 45688 899964
No 92
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=24.25 E-value=1.2e+02 Score=18.03 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=15.6
Q ss_pred cceEEEEECCCCCEEEEEcc
Q 036055 21 RIVHLFAIDPDGQKRPIIGL 40 (105)
Q Consensus 21 ~M~~Itfid~DG~~~~V~a~ 40 (105)
.+|.+.++|+||......+.
T Consensus 101 ~~P~~~~id~~g~i~~~~g~ 120 (136)
T 1zzo_A 101 QQPAYAFVDPHGNVDVVRGR 120 (136)
T ss_dssp SSSEEEEECTTCCEEEEESC
T ss_pred CCceEEEECCCCCEEEEecC
Confidence 38999999999987644544
No 93
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Probab=24.10 E-value=43 Score=27.45 Aligned_cols=32 Identities=3% Similarity=-0.172 Sum_probs=24.0
Q ss_pred cccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCcc
Q 036055 40 LAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQE 79 (105)
Q Consensus 40 ~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~e 79 (105)
..|..+|++|-++..+- +.+.|+-|+++|+++
T Consensus 239 ~~G~~i~~~aa~~lk~v--------~lElGGk~p~IV~~d 270 (517)
T 3r31_A 239 PTGRKVAAAAAGHLKHV--------TMELGGKSPMIVFDD 270 (517)
T ss_dssp HHHHHHHHHHHHTTCEE--------EEECCCCEEEEECTT
T ss_pred HHHHHHHHHhhcCCCcE--------EEEcCCcCeEEEecC
Confidence 45999999998887642 256777888888765
No 94
>2rb6_A Uncharacterized protein; NESG, Q8EI81_sheon, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.50A {Shewanella oneidensis} SCOP: b.38.1.6
Probab=24.00 E-value=74 Score=19.62 Aligned_cols=27 Identities=19% Similarity=0.105 Sum_probs=22.1
Q ss_pred CCcccCcceEEEEECCCCCEEEEEccc
Q 036055 15 SAKVAYRIVHLFAIDPDGQKRPIIGLA 41 (105)
Q Consensus 15 ~~~~~~~M~~Itfid~DG~~~~V~a~~ 41 (105)
+|.+...---+.|.|.+|.++.|.-..
T Consensus 20 KP~~D~dTGm~sY~D~~G~~~qIn~dd 46 (61)
T 2rb6_A 20 KPKLDKTTGMYLYYDEDGREVMIKQED 46 (61)
T ss_dssp CCEEETTTTEEEEECTTSCEEEEEGGG
T ss_pred CccccCCCCCEEEEcCCCCEEEEcHHH
Confidence 777777766799999999999987643
No 95
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}
Probab=23.99 E-value=43 Score=27.46 Aligned_cols=32 Identities=6% Similarity=-0.067 Sum_probs=23.6
Q ss_pred cccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCcc
Q 036055 40 LAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQE 79 (105)
Q Consensus 40 ~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~e 79 (105)
..|..+|++|-++..+- +.+.|+-|+++|+++
T Consensus 251 ~vG~~i~~~aa~~lkpv--------~lELGGk~p~IV~~d 282 (521)
T 4e4g_A 251 PIARYVYGTAAMNGKRA--------QCFGGAKNHMIIMPD 282 (521)
T ss_dssp HHHHHHHHHHHHTTCEE--------EEECCCCEEEEECTT
T ss_pred HHHHHHHHHHhhcCCCe--------eecCCCCCeEEEcCC
Confidence 56999999998887742 256677777777765
No 96
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=23.96 E-value=1.2e+02 Score=19.37 Aligned_cols=35 Identities=11% Similarity=0.145 Sum_probs=26.3
Q ss_pred cceEEEEECCCCCEEEEEccccHHHHHH----HHHCCCC
Q 036055 21 RIVHLFAIDPDGQKRPIIGLAVQTLLKA----LTNSGLI 55 (105)
Q Consensus 21 ~M~~Itfid~DG~~~~V~a~~G~SLMea----a~~nGv~ 55 (105)
.+.+|++...+|..+.|++..-.|+.+. +...|+|
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip 72 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 72 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCC
Confidence 3568999999999999999887776542 2445664
No 97
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=23.39 E-value=1.1e+02 Score=18.70 Aligned_cols=32 Identities=6% Similarity=-0.143 Sum_probs=24.2
Q ss_pred EEEECCCCCEEEEEccccHHHHHHHHHCCCCC
Q 036055 25 LFAIDPDGQKRPIIGLAVQTLLKALTNSGLID 56 (105)
Q Consensus 25 Itfid~DG~~~~V~a~~G~SLMeaa~~nGv~g 56 (105)
|++.-......+++.+.|.|+.+.+...|++.
T Consensus 3 v~Vkl~g~~~~~~ev~~g~Tv~dLL~~Lgl~~ 34 (74)
T 2l32_A 3 VTVEVVGEETSEVAVDDDGTYADLVRAVDLSP 34 (74)
T ss_dssp EEEECSSSSEEEEECSTTCSHHHHHHTTCCCS
T ss_pred EEEEEeCccceeEEcCCCCcHHHHHHHcCCCc
Confidence 44443333567789999999999999999964
No 98
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=23.31 E-value=1.2e+02 Score=18.26 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=19.2
Q ss_pred EEEECCCCCEEEEEccc-cHHHHHHHHHCC
Q 036055 25 LFAIDPDGQKRPIIGLA-VQTLLKALTNSG 53 (105)
Q Consensus 25 Itfid~DG~~~~V~a~~-G~SLMeaa~~nG 53 (105)
|++.-+||...++. . |.|+++.|...+
T Consensus 12 i~I~lpdG~~~~~~--~~~~T~~dia~~i~ 39 (88)
T 1wwt_A 12 IKVTLPDGKQVDAE--SWKTTPYQIACGIS 39 (88)
T ss_dssp EEEECTTSCEEEEE--TTTCCHHHHHHHSS
T ss_pred EEEEECCCCEEEcc--cCCCCHHHHHHHhh
Confidence 44455789875544 4 799999998764
No 99
>3u99_A Diheme cytochrome C; cytochrome C fold, electron transfer protein, electron trans diheme protein, bacterium shewanella baltica OS155; HET: HEC; 1.15A {Shewanella baltica}
Probab=23.28 E-value=12 Score=26.70 Aligned_cols=14 Identities=14% Similarity=0.586 Sum_probs=10.9
Q ss_pred ccccCceeEEeCccc
Q 036055 66 DACSVECEVNIAQEW 80 (105)
Q Consensus 66 ~~CGATCHVyVd~ew 80 (105)
.+|| +||+-..+..
T Consensus 17 ~eCg-sCH~AypP~l 30 (148)
T 3u99_A 17 AECG-SCHMAYPANL 30 (148)
T ss_dssp HHHS-SSSCCCCGGG
T ss_pred HHHH-hCCcccCccc
Confidence 4696 9999888753
No 100
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=23.27 E-value=1.3e+02 Score=18.03 Aligned_cols=17 Identities=12% Similarity=0.047 Sum_probs=14.2
Q ss_pred ceEEEEECCCCCEEEEE
Q 036055 22 IVHLFAIDPDGQKRPII 38 (105)
Q Consensus 22 M~~Itfid~DG~~~~V~ 38 (105)
+|.+.++|+||......
T Consensus 100 ~P~~~lid~~G~i~~~~ 116 (136)
T 1lu4_A 100 QPAFVFYRADGTSTFVN 116 (136)
T ss_dssp SSEEEEECTTSCEEEEC
T ss_pred CCEEEEECCCCcEEEEE
Confidence 79999999999987444
No 101
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus}
Probab=23.20 E-value=45 Score=27.07 Aligned_cols=32 Identities=3% Similarity=-0.166 Sum_probs=21.6
Q ss_pred cccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCcc
Q 036055 40 LAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQE 79 (105)
Q Consensus 40 ~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~e 79 (105)
..|..+|++|-++..+- +.+.|+-|+++|+++
T Consensus 212 ~~G~~i~~~aa~~lk~v--------~lELGGk~p~iV~~d 243 (484)
T 3ros_A 212 RGGSAVAEAAGKNLKKS--------TMELGGNDAFIVLDD 243 (484)
T ss_dssp HHHHHHHHHHHHTTCEE--------EEECCCCCEEEECTT
T ss_pred HHHHHHHHHHhccCCce--------EeecCCCCcceeCCC
Confidence 46899999998887632 144556666666654
No 102
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=23.12 E-value=49 Score=21.65 Aligned_cols=32 Identities=9% Similarity=-0.023 Sum_probs=25.0
Q ss_pred cCCCCCcccCcceEEEEECCCCCEEEEEcccc
Q 036055 11 TAAPSAKVAYRIVHLFAIDPDGQKRPIIGLAV 42 (105)
Q Consensus 11 ~~~~~~~~~~~M~~Itfid~DG~~~~V~a~~G 42 (105)
..+....+.+.+|.+++.+.||....+.-..|
T Consensus 15 ~~~~~l~~G~~aP~f~l~~~~G~~~~l~~~~G 46 (166)
T 3p7x_A 15 LKGQQINEGDFAPDFTVLDNDLNQVTLADYAG 46 (166)
T ss_dssp EESCCCCTTSBCCCCEEECTTSCEEEGGGGTT
T ss_pred eecccCCCCCCCCCeEEEcCCCCEEeHHHhCC
Confidence 34567788999999999999998877654444
No 103
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=23.08 E-value=82 Score=21.05 Aligned_cols=26 Identities=12% Similarity=0.126 Sum_probs=22.2
Q ss_pred ceEEEEECCCCCEEEEEccccHHHHH
Q 036055 22 IVHLFAIDPDGQKRPIIGLAVQTLLK 47 (105)
Q Consensus 22 M~~Itfid~DG~~~~V~a~~G~SLMe 47 (105)
..+|+|.+.+|..+++++....|+-+
T Consensus 16 ~m~I~vKtl~G~t~~lev~~s~TV~~ 41 (116)
T 1wgh_A 16 MINLRLILVSGKTKEFLFSPNDSASD 41 (116)
T ss_dssp SEEEEEECSSSCEEEEEECTTCBHHH
T ss_pred eEEEEEEeCCCCEEEEEECCcCHHHH
Confidence 46899999999999999998887643
No 104
>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida}
Probab=23.06 E-value=23 Score=21.57 Aligned_cols=7 Identities=29% Similarity=1.047 Sum_probs=5.0
Q ss_pred cccCceeE
Q 036055 67 ACSVECEV 74 (105)
Q Consensus 67 ~CGATCHV 74 (105)
.| +.||-
T Consensus 13 ~C-~~CH~ 19 (110)
T 2l4d_A 13 RC-SSCHT 19 (110)
T ss_dssp HT-TTTCC
T ss_pred hh-HHhcC
Confidence 38 68884
No 105
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=22.88 E-value=42 Score=21.73 Aligned_cols=28 Identities=7% Similarity=0.108 Sum_probs=22.4
Q ss_pred cCCCCCcccCcceEEEEECCCCCEEEEE
Q 036055 11 TAAPSAKVAYRIVHLFAIDPDGQKRPII 38 (105)
Q Consensus 11 ~~~~~~~~~~~M~~Itfid~DG~~~~V~ 38 (105)
..+....+.+.+|.+++.+.||....+.
T Consensus 13 ~~~~~~~~G~~~p~f~l~~~~G~~~~l~ 40 (167)
T 2jsy_A 13 LVGQEVKVGDQAPDFTVLTNSLEEKSLA 40 (167)
T ss_dssp BSSCCCCTTSCCCCCEEEBTTCCEEEHH
T ss_pred eccCccCCCCcCCceEEECCCCCEeeHH
Confidence 3555778899999999999999876543
No 106
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=22.83 E-value=50 Score=28.22 Aligned_cols=40 Identities=15% Similarity=0.046 Sum_probs=28.0
Q ss_pred ccccceeecCCCCCcccCc----ceEEEEECCCCCEEEEEcccc
Q 036055 3 FFSKQWRYTAAPSAKVAYR----IVHLFAIDPDGQKRPIIGLAV 42 (105)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~----M~~Itfid~DG~~~~V~a~~G 42 (105)
-||+|.|-+...++-..+. =++|-++|.||...-.....+
T Consensus 66 AFPVqi~i~~~~~~~~~~~vhIt~VkiYVvd~ng~ky~~~~~~~ 109 (526)
T 2wb7_A 66 AFPVQIRLEIPNQPVPFNKVHITEVTAYVIDENNRTYWTRVWNS 109 (526)
T ss_dssp EEEEEEEEEECCCSSTTCCEEEEEEEEEEEETTSCEEEEEEEEG
T ss_pred cCcEEEEEecCCCCcccCceEEEEEEEEEEcCCCceEEEEEecc
Confidence 4999999988655444443 567888999998665555444
No 107
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=22.65 E-value=54 Score=20.96 Aligned_cols=33 Identities=9% Similarity=0.066 Sum_probs=25.4
Q ss_pred ecCCCCCcccCcceEEEEECCCCCEEEEEcccc
Q 036055 10 YTAAPSAKVAYRIVHLFAIDPDGQKRPIIGLAV 42 (105)
Q Consensus 10 ~~~~~~~~~~~~M~~Itfid~DG~~~~V~a~~G 42 (105)
...+....+.+.+|.+++.+.+|....+....|
T Consensus 9 ~~~~~~~~~G~~~p~f~l~~~~g~~~~l~~~~g 41 (158)
T 3hdc_A 9 ESDAPLVRTGALAPNFKLPTLSGENKSLAQYRG 41 (158)
T ss_dssp CCCSCCCCTTSBCCCCEEECTTSCEEESGGGTT
T ss_pred ccCCcccCCCCcCCCceeEcCCCCEEehHHhCC
Confidence 345556778899999999999998877655444
No 108
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=22.24 E-value=90 Score=18.12 Aligned_cols=32 Identities=13% Similarity=0.084 Sum_probs=24.6
Q ss_pred EEEEECCCCCEEEEEccccHHHHHH----HHHCCCC
Q 036055 24 HLFAIDPDGQKRPIIGLAVQTLLKA----LTNSGLI 55 (105)
Q Consensus 24 ~Itfid~DG~~~~V~a~~G~SLMea----a~~nGv~ 55 (105)
.|++...+|..+++++....|+-+. +...|+|
T Consensus 6 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip 41 (79)
T 3phx_B 6 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ 41 (79)
T ss_dssp EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCC
T ss_pred EEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCC
Confidence 6889999999999999888777542 2445764
No 109
>4f98_A Hypothetical protein; PF10976 family protein, DUF2790, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.26A {Pseudomonas aeruginosa}
Probab=22.23 E-value=84 Score=19.82 Aligned_cols=16 Identities=19% Similarity=0.073 Sum_probs=14.2
Q ss_pred EEEEECCCCCEEEEEc
Q 036055 24 HLFAIDPDGQKRPIIG 39 (105)
Q Consensus 24 ~Itfid~DG~~~~V~a 39 (105)
..||.|.-|..|+|+-
T Consensus 44 ~MtY~DS~G~~~~l~Y 59 (69)
T 4f98_A 44 TVVYEDHSGELHKIRF 59 (69)
T ss_dssp EEEEECTTSCEEEEEE
T ss_pred EEEEEcCCCCEEEEEE
Confidence 4799999999999975
No 110
>2jn0_A Hypothetical lipoprotein YGDR; solution structure, PSI-2 target, structural genomics, protein structure initiative; NMR {Escherichia coli} SCOP: b.38.1.6 PDB: 3fif_A
Probab=22.03 E-value=1e+02 Score=18.94 Aligned_cols=29 Identities=14% Similarity=-0.018 Sum_probs=23.3
Q ss_pred CCCcccCcceEEEEECCCCCEEEEEcccc
Q 036055 14 PSAKVAYRIVHLFAIDPDGQKRPIIGLAV 42 (105)
Q Consensus 14 ~~~~~~~~M~~Itfid~DG~~~~V~a~~G 42 (105)
-+|.+...---+.|.|.+|.++.|.-..=
T Consensus 19 GKP~~D~dTGm~sY~D~~G~~~qIn~ddV 47 (61)
T 2jn0_A 19 GKPEIDDDTGLVSYHDQQGNAMQINRDDV 47 (61)
T ss_dssp CCCEEETTTTEEEEEBTTSCEEEEEGGGE
T ss_pred CCccccCCCCCEEEEcCCCCEEEEcHHHH
Confidence 37787777667999999999999986543
No 111
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=21.84 E-value=76 Score=19.74 Aligned_cols=36 Identities=14% Similarity=0.096 Sum_probs=26.2
Q ss_pred CcceEEEEECCCCCEEEEEccccHHH---HHHH-HHCCCC
Q 036055 20 YRIVHLFAIDPDGQKRPIIGLAVQTL---LKAL-TNSGLI 55 (105)
Q Consensus 20 ~~M~~Itfid~DG~~~~V~a~~G~SL---Meaa-~~nGv~ 55 (105)
..+.+|++.+.+|..+.+++..-.|+ ++.. ...||+
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip 58 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP 58 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC
Confidence 34668999999999999999877664 4333 445664
No 112
>2fwt_A DHC, diheme cytochrome C; diheme protein, electron transfer, sphaeroides heme protein, oxygen-binding, electron transpor; HET: HEM; 1.85A {Rhodobacter sphaeroides}
Probab=21.67 E-value=15 Score=25.50 Aligned_cols=13 Identities=23% Similarity=0.675 Sum_probs=10.5
Q ss_pred ccccCceeEEeCcc
Q 036055 66 DACSVECEVNIAQE 79 (105)
Q Consensus 66 ~~CGATCHVyVd~e 79 (105)
..|| +||.-.++.
T Consensus 11 ~~C~-~CH~a~pp~ 23 (125)
T 2fwt_A 11 TECS-ACHMAYPAA 23 (125)
T ss_dssp HHTS-SSSCCCCGG
T ss_pred HHHH-hccCCCCcc
Confidence 4696 999998865
No 113
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=21.52 E-value=1.4e+02 Score=18.65 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=19.4
Q ss_pred cceEEEEECCCCCEEEEEcccc-HHHHHHH
Q 036055 21 RIVHLFAIDPDGQKRPIIGLAV-QTLLKAL 49 (105)
Q Consensus 21 ~M~~Itfid~DG~~~~V~a~~G-~SLMeaa 49 (105)
..|++.|++.+|......+..- ..|.+.+
T Consensus 92 ~~Pt~~~~~~~G~~~~~~G~~~~~~l~~~l 121 (136)
T 2l5l_A 92 SIPSILFIPMEGKPEMAQGAMPKASFKKAI 121 (136)
T ss_dssp SSCEEEEECSSSCCEEEESCCCHHHHHHHH
T ss_pred CCCEEEEECCCCcEEEEeCCCCHHHHHHHH
Confidence 3899999999998765555333 3444443
No 114
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=21.45 E-value=99 Score=19.45 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=19.1
Q ss_pred ceEEEEECCCCCEEEEEccccHHHHHHH
Q 036055 22 IVHLFAIDPDGQKRPIIGLAVQTLLKAL 49 (105)
Q Consensus 22 M~~Itfid~DG~~~~V~a~~G~SLMeaa 49 (105)
+|++.++|+||....... .+..|.+.+
T Consensus 110 ~P~~~lid~~G~i~~~~~-~~~~l~~~l 136 (152)
T 2lrn_A 110 FPHIILVDPEGKIVAKEL-RGDDLYNTV 136 (152)
T ss_dssp SCEEEEECTTSEEEEECC-CTTHHHHHH
T ss_pred CCeEEEECCCCeEEEeeC-CHHHHHHHH
Confidence 799999999998766542 455555444
No 115
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=21.39 E-value=35 Score=18.06 Aligned_cols=19 Identities=11% Similarity=-0.069 Sum_probs=15.7
Q ss_pred EEccccHHHHHHHHHCCCC
Q 036055 37 IIGLAVQTLLKALTNSGLI 55 (105)
Q Consensus 37 V~a~~G~SLMeaa~~nGv~ 55 (105)
..+..|.||-.+|.++|+.
T Consensus 5 y~V~~GDtl~~Ia~~~~~~ 23 (48)
T 1e0g_A 5 YRVRKGDSLSSIAKRHGVN 23 (48)
T ss_dssp EEECTTCCHHHHHHHHTCC
T ss_pred EEEcCCCcHHHHHHHHCcC
Confidence 4567899999999999883
No 116
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Probab=21.36 E-value=44 Score=27.08 Aligned_cols=32 Identities=6% Similarity=-0.030 Sum_probs=22.8
Q ss_pred cccHHHHHHHHHCCCCCccccCCCccccccCceeEEeCcc
Q 036055 40 LAVQTLLKALTNSGLIDPASHRLEEIDACSVECEVNIAQE 79 (105)
Q Consensus 40 ~~G~SLMeaa~~nGv~g~~~~~i~gi~~CGATCHVyVd~e 79 (105)
..|..+|+.|-++..+- +.+.|+-|++||+++
T Consensus 238 ~~G~~i~~~aa~~l~pv--------~lElGGk~p~iV~~d 269 (497)
T 3k2w_A 238 VAGKQIYKTSAEYMTPV--------MLELGGKAPMVVMDD 269 (497)
T ss_dssp HHHHHHHHHHTTTTCCE--------EEECCCCEEEEECTT
T ss_pred HHHHHHHHHhhhcCCCe--------EEEcCCCCceEEcCC
Confidence 56889999987776532 256667778888765
No 117
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology, nysgrc, NEW YORK structura genomics research consortium; HET: PE4; 1.91A {Sinorhizobium meliloti}
Probab=21.19 E-value=41 Score=27.45 Aligned_cols=32 Identities=6% Similarity=-0.049 Sum_probs=25.3
Q ss_pred cccHHHHHHHHHCC--CCCccccCCCccccccCceeEEeCcc
Q 036055 40 LAVQTLLKALTNSG--LIDPASHRLEEIDACSVECEVNIAQE 79 (105)
Q Consensus 40 ~~G~SLMeaa~~nG--v~g~~~~~i~gi~~CGATCHVyVd~e 79 (105)
..|..+|++|-.+. ++ -+.+.|+-|++||+++
T Consensus 265 ~~G~~i~~~aa~~~~~~p--------v~lElGGk~p~iV~~d 298 (528)
T 3v4c_A 265 AGGRALFDLCAARPEPIP--------FFGELGSVNPMFLLPE 298 (528)
T ss_dssp HHHHHHHHHHHHSSSCCC--------EEEECCCCCCEEECHH
T ss_pred HHHHHHHHHHhhccCCCc--------eEEecCCCCeEEECCC
Confidence 46899999999887 53 2367888999999876
No 118
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=21.15 E-value=60 Score=18.95 Aligned_cols=33 Identities=9% Similarity=0.051 Sum_probs=24.8
Q ss_pred eEEEEECCCCCEEEEEccccHHHHHH----HHHCCCC
Q 036055 23 VHLFAIDPDGQKRPIIGLAVQTLLKA----LTNSGLI 55 (105)
Q Consensus 23 ~~Itfid~DG~~~~V~a~~G~SLMea----a~~nGv~ 55 (105)
.+|++...+|..+++++..-.|+-+. +...|+|
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip 40 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIP 40 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC
Confidence 37899999999999999887776543 2445664
No 119
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=20.87 E-value=1e+02 Score=18.26 Aligned_cols=36 Identities=11% Similarity=-0.102 Sum_probs=26.2
Q ss_pred CcceEEEEECCCC-CEEEE-EccccHHHHHH----HHHCCCC
Q 036055 20 YRIVHLFAIDPDG-QKRPI-IGLAVQTLLKA----LTNSGLI 55 (105)
Q Consensus 20 ~~M~~Itfid~DG-~~~~V-~a~~G~SLMea----a~~nGv~ 55 (105)
+.+.+|++...+| ..+++ ++..-.|+-+. +...|++
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip 46 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVR 46 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCC
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcC
Confidence 4566899999999 79999 48877776543 3456774
No 120
>4gym_A Glyoxalase/bleomycin resistance protein/dioxygena; PSI-biology, midwest center for structural genomics, MCSG, oxidoreductase; HET: MSE; 1.56A {Conexibacter woesei}
Probab=20.53 E-value=1.1e+02 Score=19.25 Aligned_cols=17 Identities=18% Similarity=0.135 Sum_probs=14.1
Q ss_pred ceEEEEECCCCCEEEEE
Q 036055 22 IVHLFAIDPDGQKRPII 38 (105)
Q Consensus 22 M~~Itfid~DG~~~~V~ 38 (105)
+-.+.|.||||+.-+|-
T Consensus 115 ~~~~~f~DPDGn~iEi~ 131 (149)
T 4gym_A 115 MYGRSFHDLDGHLWEVM 131 (149)
T ss_dssp EEEEEEECTTCCEEEEE
T ss_pred EEEEEEEcCCCCEEEEE
Confidence 55688999999988875
No 121
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=20.35 E-value=1e+02 Score=17.24 Aligned_cols=32 Identities=9% Similarity=-0.001 Sum_probs=23.6
Q ss_pred EEEEECCCCCEEEEEccccHHHHHH----HHHCCCC
Q 036055 24 HLFAIDPDGQKRPIIGLAVQTLLKA----LTNSGLI 55 (105)
Q Consensus 24 ~Itfid~DG~~~~V~a~~G~SLMea----a~~nGv~ 55 (105)
+|++...+|..+++++..-.|+-+. +...|++
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~ 37 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP 37 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcC
Confidence 5888889999999999877776542 2445664
No 122
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=20.09 E-value=93 Score=18.78 Aligned_cols=34 Identities=12% Similarity=0.071 Sum_probs=25.2
Q ss_pred ceEEEEECCCCCEEEEEccccHHHHHH----HHHCCCC
Q 036055 22 IVHLFAIDPDGQKRPIIGLAVQTLLKA----LTNSGLI 55 (105)
Q Consensus 22 M~~Itfid~DG~~~~V~a~~G~SLMea----a~~nGv~ 55 (105)
+.+|++...+|...++++..-.|+-+. +...|||
T Consensus 4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip 41 (88)
T 2hj8_A 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ 41 (88)
T ss_dssp EEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSC
T ss_pred cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCC
Confidence 457999999999999999877766542 3456764
Done!