Query 036056
Match_columns 146
No_of_seqs 148 out of 353
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 08:59:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036056.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036056hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3225 Mitochondrial import i 100.0 5E-30 1.1E-34 198.9 3.7 129 13-143 30-164 (168)
2 TIGR00980 3a0801so1tim17 mitoc 99.9 3.1E-27 6.8E-32 185.7 11.7 115 22-143 6-128 (170)
3 PTZ00236 mitochondrial import 99.9 1.1E-26 2.4E-31 181.6 12.5 115 22-143 8-130 (164)
4 TIGR00983 3a0801s02tim23 mitoc 99.9 1.3E-26 2.9E-31 178.7 11.0 113 22-137 31-147 (149)
5 PF02466 Tim17: Tim17/Tim22/Ti 99.9 3.2E-25 7E-30 163.5 12.5 119 24-144 1-126 (128)
6 KOG1652 Mitochondrial import i 99.9 2.7E-23 5.9E-28 164.0 -0.9 119 22-143 6-128 (183)
7 KOG3324 Mitochondrial import i 99.8 2.1E-21 4.7E-26 155.2 7.2 109 24-134 76-188 (206)
8 COG5596 TIM22 Mitochondrial im 99.7 9E-18 1.9E-22 133.4 0.2 136 6-143 22-187 (191)
9 COG5596 TIM22 Mitochondrial im 97.6 1.5E-05 3.3E-10 63.9 0.2 126 1-127 1-138 (191)
10 PF10247 Romo1: Reactive mitoc 97.5 0.00033 7.2E-09 47.8 6.1 67 23-89 1-67 (67)
11 KOG4096 Uncharacterized conser 97.1 0.0012 2.5E-08 45.8 4.9 70 21-90 3-72 (75)
12 KOG4608 Uncharacterized conser 96.8 0.00028 6E-09 58.9 -0.1 56 64-119 121-180 (270)
13 PF12732 YtxH: YtxH-like prote 91.2 0.29 6.3E-06 33.0 3.4 40 33-72 1-40 (74)
14 TIGR00980 3a0801so1tim17 mitoc 86.3 5.8 0.00012 31.5 8.0 24 25-48 17-40 (170)
15 PF05818 TraT: Enterobacterial 83.3 1.9 4E-05 35.5 4.2 40 103-142 89-128 (215)
16 KOG1398 Uncharacterized conser 75.0 2.9 6.3E-05 37.6 3.0 42 74-115 303-344 (460)
17 PF13436 Gly-zipper_OmpA: Glyc 72.3 11 0.00023 27.9 5.1 44 98-142 50-94 (118)
18 PTZ00236 mitochondrial import 72.1 32 0.0007 27.2 8.0 34 12-48 9-42 (164)
19 PF13488 Gly-zipper_Omp: Glyci 64.1 27 0.00059 21.8 5.0 38 105-143 4-42 (46)
20 KOG1398 Uncharacterized conser 60.8 22 0.00048 32.2 5.5 53 63-115 71-123 (460)
21 PF10439 Bacteriocin_IIc: Bact 59.7 27 0.00059 23.0 4.7 36 99-135 24-59 (65)
22 KOG0759 Mitochondrial oxogluta 56.1 23 0.00049 30.5 4.7 87 30-117 4-113 (286)
23 PF04418 DUF543: Domain of unk 55.7 16 0.00035 25.2 3.2 35 11-45 11-45 (75)
24 COG4980 GvpP Gas vesicle prote 46.9 37 0.00079 25.4 4.0 26 32-57 6-31 (115)
25 PF08560 DUF1757: Protein of u 45.2 1.5E+02 0.0031 23.1 9.4 35 13-47 11-45 (155)
26 PRK13731 conjugal transfer sur 42.1 41 0.00088 28.3 4.0 47 95-142 107-158 (243)
27 KOG0682 Ammonia permease [Inor 41.0 58 0.0013 30.1 5.1 54 88-143 275-332 (500)
28 PF13441 Gly-zipper_YMGG: YMGG 39.0 40 0.00087 21.2 2.7 36 102-138 5-41 (45)
29 KOG3225 Mitochondrial import i 38.6 73 0.0016 25.4 4.7 123 11-135 14-152 (168)
30 PF14689 SPOB_a: Sensor_kinase 38.0 13 0.00028 24.3 0.4 23 87-109 9-34 (62)
31 PF13940 Ldr_toxin: Toxin Ldr, 37.8 30 0.00066 20.7 1.9 20 98-117 12-31 (35)
32 PRK11280 hypothetical protein; 35.7 38 0.00081 27.0 2.7 37 104-140 68-107 (170)
33 KOG4096 Uncharacterized conser 34.8 33 0.00071 23.9 2.0 65 27-91 5-69 (75)
34 KOG0770 Predicted mitochondria 33.3 50 0.0011 28.7 3.3 59 61-119 177-250 (353)
35 PF02466 Tim17: Tim17/Tim22/Ti 29.8 2.1E+02 0.0045 20.4 7.1 25 23-47 4-28 (128)
36 COG5336 Uncharacterized protei 29.6 1.7E+02 0.0036 22.0 5.1 26 27-52 46-71 (116)
37 PF13436 Gly-zipper_OmpA: Glyc 26.9 1.1E+02 0.0025 22.3 4.0 23 27-49 50-72 (118)
38 PRK10510 putative outer membra 24.1 1.1E+02 0.0023 24.8 3.6 39 103-142 38-80 (219)
39 PF14241 DUF4341: Domain of un 23.9 86 0.0019 20.5 2.5 22 94-115 40-61 (62)
40 TIGR03789 pdsO proteobacterial 23.8 77 0.0017 26.3 2.8 34 101-136 40-74 (239)
41 PF03672 UPF0154: Uncharacteri 20.9 2.8E+02 0.006 18.7 5.7 39 35-73 5-47 (64)
42 PF12488 DUF3704: Protein of u 20.1 37 0.0008 19.3 0.1 12 1-12 11-22 (27)
No 1
>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5e-30 Score=198.89 Aligned_cols=129 Identities=16% Similarity=0.135 Sum_probs=110.3
Q ss_pred CcccccccccCchHHHHHHHHHHHHHHHHHHHHHHHHhhh----hc-CCCcchHHH-HHHHHHhcccchhHHHHHHHhhc
Q 036056 13 PRVDVGIDTGNDFLNHTVDGFLKIGAVAATRAVAEDTYNI----VK-GGNFSRHHL-EHALKKMCKEGAYWGTVAGVYVG 86 (146)
Q Consensus 13 p~~~~~~d~~~pc~~rtv~~~l~gg~~Ga~~Gl~~ga~~~----~~-~g~~~k~~~-~~~lk~~g~~g~~~g~vggvfsg 86 (146)
|++.-.++.+|+|+.|++.+-+.|.++|.++|+|.++++. |+ ...+.++++ +++.++++..+.+|+++|++|++
T Consensus 30 ~~e~r~le~~n~c~~Ka~~sgV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~~kdMg~r~~s~~knF~~iGlvfsg 109 (168)
T KOG3225|consen 30 PTEMRYLEEENSCAVKAVKSGVTGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQVAKDMGQRSGSYAKNFAIIGLVFSG 109 (168)
T ss_pred hHHHHHHHHhcchhHHHHHhhccccchhhhHHhhhhhcccCCCCCchhhhhhHHHHHHHHHhhhcchhhhhhhhhhhehh
Confidence 3444558999999999999999999999999999999983 21 223444444 45555555566799999999999
Q ss_pred chhhhhhhhhccchhHHHHHHHHHHHHhhhccCCchhHHHHhHHHHHHHHHHHHHhh
Q 036056 87 MEYGVEKVRGTKDWKNAMIGGAFTGALVSAVGKNNRDKVVMDALTGGAIAAAAEFLS 143 (146)
Q Consensus 87 ~ec~ie~~Rgk~D~~Ns~~aGa~TGa~l~~~~G~~~~~~v~~ai~gaa~s~aie~~~ 143 (146)
+||.||++|.||||.|++++||+||+.++.++| |++.++||+++ ++||++||+|.
T Consensus 110 ~Ec~iE~~RAK~D~~NgaiaG~vtGg~l~~raG-p~a~~~G~agf-a~fS~~id~y~ 164 (168)
T KOG3225|consen 110 VECLIESFRAKSDWYNGAIAGCVTGGSLGYRAG-PKAAAIGCAGF-AAFSAAIDKYM 164 (168)
T ss_pred HHHHHHHHHhhhchhcceeeeeeeccchhhccc-chhhhhchhHH-HHHHHHHHHhh
Confidence 999999999999999999999999999999999 99999999995 99999999875
No 2
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=99.95 E-value=3.1e-27 Score=185.66 Aligned_cols=115 Identities=20% Similarity=0.228 Sum_probs=97.2
Q ss_pred cCchHHHHHHH----HHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHHHHHhcccc----hhHHHHHHHhhcchhhhhh
Q 036056 22 GNDFLNHTVDG----FLKIGAVAATRAVAEDTYNIVKGGNFSRHHLEHALKKMCKEG----AYWGTVAGVYVGMEYGVEK 93 (146)
Q Consensus 22 ~~pc~~rtv~~----~l~gg~~Ga~~Gl~~ga~~~~~~g~~~k~~~~~~lk~~g~~g----~~~g~vggvfsg~ec~ie~ 93 (146)
-+||+.|++|+ |.+|.+.|.+|+++++.++.|.. ++++..++.+..++ .+|++||++|+++||++++
T Consensus 6 r~pcp~r~~d~~G~af~~G~~~G~~~g~~~G~rnsp~g-----~rl~g~l~av~~rap~~g~~Fav~g~lys~~ec~i~~ 80 (170)
T TIGR00980 6 REPCPYRILDDFGGAFAMGTIGGSIFQAFKGFRNSPKG-----EKLVGAMRAIKTRAPVLGGNFAVWGGLFSTIDCAVVA 80 (170)
T ss_pred cCCCcchhHHhhhHHHHHHHHHHHHHHHHHHhhcCCcc-----chhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999998 67888888888888888766522 25667777666665 5788999999999999999
Q ss_pred hhhccchhHHHHHHHHHHHHhhhccCCchhHHHHhHHHHHHHHHHHHHhh
Q 036056 94 VRGTKDWKNAMIGGAFTGALVSAVGKNNRDKVVMDALTGGAIAAAAEFLS 143 (146)
Q Consensus 94 ~Rgk~D~~Ns~~aGa~TGa~l~~~~G~~~~~~v~~ai~gaa~s~aie~~~ 143 (146)
+|+||||||+++|||+||++|++++| | +++++++++++++.++||+..
T Consensus 81 ~R~KeD~~NsiiAG~~TGa~l~~r~G-~-~a~~~~aa~gg~~la~ie~~g 128 (170)
T TIGR00980 81 IRKKEDPWNSIISGFLTGAALAVRGG-P-RAMRGSAILGACILAVIEGVG 128 (170)
T ss_pred HhcccchHHHHHHHHHHHHHHHhccC-h-HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 6 555666666899999999875
No 3
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=99.94 E-value=1.1e-26 Score=181.62 Aligned_cols=115 Identities=20% Similarity=0.300 Sum_probs=98.8
Q ss_pred cCchHHHHHHH----HHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHHHHHhcccc----hhHHHHHHHhhcchhhhhh
Q 036056 22 GNDFLNHTVDG----FLKIGAVAATRAVAEDTYNIVKGGNFSRHHLEHALKKMCKEG----AYWGTVAGVYVGMEYGVEK 93 (146)
Q Consensus 22 ~~pc~~rtv~~----~l~gg~~Ga~~Gl~~ga~~~~~~g~~~k~~~~~~lk~~g~~g----~~~g~vggvfsg~ec~ie~ 93 (146)
-+||+.|++|+ |.+|.+.|++|+++.|.+++|. + ++++..++.+++++ ..|++||++|+++||++++
T Consensus 8 r~pcp~ri~dd~G~af~~G~vgG~~~~~~~G~rnsp~-g----~rl~g~l~~~~~rap~~g~~FAv~G~~ys~~ec~~~~ 82 (164)
T PTZ00236 8 REPCPDRIIEDMGGAFSMGCIGGFIWHFLKGMRNSPK-G----ERFSGGFYLLRKRAPILGGNFAIWGGLFSTFDCTLQY 82 (164)
T ss_pred cCCCchHHHHhccHHHHHHHHHHHHHHHHHHHHhCCC-c----chHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999998 9999999999999999988863 2 35666666666554 5788999999999999999
Q ss_pred hhhccchhHHHHHHHHHHHHhhhccCCchhHHHHhHHHHHHHHHHHHHhh
Q 036056 94 VRGTKDWKNAMIGGAFTGALVSAVGKNNRDKVVMDALTGGAIAAAAEFLS 143 (146)
Q Consensus 94 ~Rgk~D~~Ns~~aGa~TGa~l~~~~G~~~~~~v~~ai~gaa~s~aie~~~ 143 (146)
+|+||||||+++||++||++++++.| |+.. +.++++|++++.+||.+.
T Consensus 83 ~R~K~D~~Nsi~AG~~TGa~l~~r~G-~~~~-~~~a~~Gg~~~~~ie~~~ 130 (164)
T PTZ00236 83 LRGKEDHWNAIASGFFTGGVLAIRGG-WRSA-VRNAIFGGILLGIIELVS 130 (164)
T ss_pred HHccCchHHHHHHHHHHHHHHHHhcC-hHHH-HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 6665 555666899989898775
No 4
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=99.94 E-value=1.3e-26 Score=178.69 Aligned_cols=113 Identities=27% Similarity=0.339 Sum_probs=100.4
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHHHHHhcccchhH----HHHHHHhhcchhhhhhhhhc
Q 036056 22 GNDFLNHTVDGFLKIGAVAATRAVAEDTYNIVKGGNFSRHHLEHALKKMCKEGAYW----GTVAGVYVGMEYGVEKVRGT 97 (146)
Q Consensus 22 ~~pc~~rtv~~~l~gg~~Ga~~Gl~~ga~~~~~~g~~~k~~~~~~lk~~g~~g~~~----g~vggvfsg~ec~ie~~Rgk 97 (146)
+++....|..+|++|.+.|++||+++|.++.| ...+.|++++.++|+++++++.| |+|+++|+++||.+|++|+|
T Consensus 31 ~e~~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~-~~~~~k~rln~~ln~~~~~g~~~G~~~g~~g~lys~~e~~i~~~R~k 109 (149)
T TIGR00983 31 FEDLCFGTGTCYLTGLAIGALNGLRLGLKETQ-SMPWTKLRLNQILNMVTRRGPFWGNTLGILALVYNGINSIIEATRGK 109 (149)
T ss_pred hhhhhhhHhHHHHHHHHHHHHHHHHHHHhhCC-CCCcHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45566789999999999999999999998765 34577999999999999998755 59999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhhhccCCchhHHHHhHHHHHHHHH
Q 036056 98 KDWKNAMIGGAFTGALVSAVGKNNRDKVVMDALTGGAIAA 137 (146)
Q Consensus 98 ~D~~Ns~~aGa~TGa~l~~~~G~~~~~~v~~ai~gaa~s~ 137 (146)
|||+|+++||++||+++++++| |+++++++++ |++++.
T Consensus 110 ~D~~Nsv~AGa~TGal~~~~~G-~r~~~~g~~~-G~~l~~ 147 (149)
T TIGR00983 110 HDDFNSVAAGALTGALYKSTRG-LRGMARSGAL-GATAAG 147 (149)
T ss_pred chhhHhHHHHHHHHHHHHhccC-hHHHHHHhHH-HHHHhh
Confidence 9999999999999999999999 9999998888 455543
No 5
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=99.93 E-value=3.2e-25 Score=163.46 Aligned_cols=119 Identities=27% Similarity=0.312 Sum_probs=105.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhh---hcCCCcchHHHHHHHHHhcc----cchhHHHHHHHhhcchhhhhhhhh
Q 036056 24 DFLNHTVDGFLKIGAVAATRAVAEDTYNI---VKGGNFSRHHLEHALKKMCK----EGAYWGTVAGVYVGMEYGVEKVRG 96 (146)
Q Consensus 24 pc~~rtv~~~l~gg~~Ga~~Gl~~ga~~~---~~~g~~~k~~~~~~lk~~g~----~g~~~g~vggvfsg~ec~ie~~Rg 96 (146)
||++|++++.+++..+|+++|.+.+.+.. ++...+.+++++.+++.+++ .+..||.++++|+++||.+|++|+
T Consensus 1 ~c~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~ 80 (128)
T PF02466_consen 1 SCPERILDSTGKGFVAGAVFGGFIGAISAFTRPPRGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRG 80 (128)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 79999999999999999999999999842 33556778899999999999 677889999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhhhccCCchhHHHHhHHHHHHHHHHHHHhhc
Q 036056 97 TKDWKNAMIGGAFTGALVSAVGKNNRDKVVMDALTGGAIAAAAEFLSY 144 (146)
Q Consensus 97 k~D~~Ns~~aGa~TGa~l~~~~G~~~~~~v~~ai~gaa~s~aie~~~~ 144 (146)
|||+||++++|++||++++.+.+ ++..+.+ ++.+++++.++|+++.
T Consensus 81 k~D~~N~~~aG~~aGa~~~~~~g-~~~~~~~-~~~~a~~~~~~~~~~~ 126 (128)
T PF02466_consen 81 KDDPWNSAIAGAAAGAVLGLRSG-PRGMASG-AALGAAFAAAVEYYGR 126 (128)
T ss_pred ccccchhHHHHHHHHHHHHhccC-hHHHHHH-HHHHHHHHHHHHHHhc
Confidence 99999999999999999999998 6666665 5557999999999874
No 6
>KOG1652 consensus Mitochondrial import inner membrane translocase, subunit TIM17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.7e-23 Score=163.97 Aligned_cols=119 Identities=20% Similarity=0.238 Sum_probs=105.3
Q ss_pred cCchHHHHHHH----HHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHHHHHhcccchhHHHHHHHhhcchhhhhhhhhc
Q 036056 22 GNDFLNHTVDG----FLKIGAVAATRAVAEDTYNIVKGGNFSRHHLEHALKKMCKEGAYWGTVAGVYVGMEYGVEKVRGT 97 (146)
Q Consensus 22 ~~pc~~rtv~~----~l~gg~~Ga~~Gl~~ga~~~~~~g~~~k~~~~~~lk~~g~~g~~~g~vggvfsg~ec~ie~~Rgk 97 (146)
-+||+-|.++. |.+|.+-|.+|.++.|.++.|+.. ..+..++.+..+.+..+.+|++||++||.+||.+.++|+|
T Consensus 6 r~pcp~riv~d~g~afamg~igG~~f~~ikG~~nap~G~-r~~gg~~av~~~ap~~ggsFAvwgglfSt~dC~Lv~~R~K 84 (183)
T KOG1652|consen 6 REPCPIRIVDDCGGAFAMGTIGGSVFQLIKGFRNAPSGA-RLVGGISAVKMRAPQSGGSFAVWGGLFSTVDCALVAIRKK 84 (183)
T ss_pred CCCCCceeeccccchhhhcccccceeeeeeeeecCCccc-ccccchhhhhccCcccccceeeeechhhHHHHHHHHHhcc
Confidence 36888888876 788888899999999999987533 4455677888899999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhhhccCCchhHHHHhHHHHHHHHHHHHHhh
Q 036056 98 KDWKNAMIGGAFTGALVSAVGKNNRDKVVMDALTGGAIAAAAEFLS 143 (146)
Q Consensus 98 ~D~~Ns~~aGa~TGa~l~~~~G~~~~~~v~~ai~gaa~s~aie~~~ 143 (146)
+|+||++++||+||++|+.+.| +.+++.+|+.|+++...+|-+.
T Consensus 85 eDpwNsivsGa~TGg~La~r~g--~~a~~~sa~~~g~~lamieg~g 128 (183)
T KOG1652|consen 85 EDPWNSIVSGAATGGLLAARGG--PKAMLTSAITGGLLLAMIEGLG 128 (183)
T ss_pred cchHHHHHHHhhccceeecccc--HHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999999 7778899999999999998664
No 7
>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=2.1e-21 Score=155.16 Aligned_cols=109 Identities=28% Similarity=0.424 Sum_probs=97.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHHHHHhcccchhHH----HHHHHhhcchhhhhhhhhccc
Q 036056 24 DFLNHTVDGFLKIGAVAATRAVAEDTYNIVKGGNFSRHHLEHALKKMCKEGAYWG----TVAGVYVGMEYGVEKVRGTKD 99 (146)
Q Consensus 24 pc~~rtv~~~l~gg~~Ga~~Gl~~ga~~~~~~g~~~k~~~~~~lk~~g~~g~~~g----~vggvfsg~ec~ie~~Rgk~D 99 (146)
+....|=-.|+.|.++|+++|+..|..+ ++..++.|+++++++|.++|+|..|| +++.+|+++|++|++.|+|||
T Consensus 76 ~l~f~tG~~yl~G~~iGa~~G~~~Glk~-~e~~~~~Klr~nrILN~~t~~G~~~gN~lG~laL~YsaiesgI~~~R~~dd 154 (206)
T KOG3324|consen 76 NLTFGTGWAYLTGSAIGAFNGLILGLKN-TENGASGKLRLNRILNSVTRRGRFWGNTLGSLALMYSAIESGIEATRGKDD 154 (206)
T ss_pred hhheeccchhccchhhhhHHHHHHhhhc-CCCCCccchhHHHHhhhccccccccccchhHHHHHHHHHHHHHHHhhcccc
Confidence 3444555669999999999999999954 56689999999999999999999885 899999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhhccCCchhHHHHhHHHHHH
Q 036056 100 WKNAMIGGAFTGALVSAVGKNNRDKVVMDALTGGA 134 (146)
Q Consensus 100 ~~Ns~~aGa~TGa~l~~~~G~~~~~~v~~ai~gaa 134 (146)
|+|+++||++||++++++.| +|++.+++++.+.|
T Consensus 155 ~lnsv~AGalTGalyrs~~G-lr~~av~ga~g~~a 188 (206)
T KOG3324|consen 155 DLNSVAAGALTGALYRSTRG-LRAAAVAGAVGGTA 188 (206)
T ss_pred chhhhhhhhhhhhhhhcCCC-chHHHHHHHHHHHH
Confidence 99999999999999999999 99999999885333
No 8
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=9e-18 Score=133.37 Aligned_cols=136 Identities=18% Similarity=0.143 Sum_probs=111.5
Q ss_pred CcccCCCCccccc-ccccC----chHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----c----------------CCCcc
Q 036056 6 FAGALTTPRVDVG-IDTGN----DFLNHTVDGFLKIGAVAATRAVAEDTYNIV-----K----------------GGNFS 59 (146)
Q Consensus 6 ~~~~~~~p~~~~~-~d~~~----pc~~rtv~~~l~gg~~Ga~~Gl~~ga~~~~-----~----------------~g~~~ 59 (146)
+|++-.+|-..+. .|+++ -|+.+++.+.+.|...|...+.+.++...- . ...+.
T Consensus 22 lS~~e~d~~~~~~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwGgl~~~i~~~~~ 101 (191)
T COG5596 22 LSPEERDPCPLEKLADFMKAFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWGGLFSTIDCTPF 101 (191)
T ss_pred cChhhcCchhhhHHhhhccchhhcchhhhhhhcccccccccccccchhhcccccccccccCccccccccceeeccccchH
Confidence 3444444444444 66766 599999999888888888888888775411 1 11366
Q ss_pred hHHHHHHHHHhcccch----hHHHHHHHhhcchhhhhhhhhccchhHHHHHHHHHHHHhhhccCCchhHHHHhHHHHHHH
Q 036056 60 RHHLEHALKKMCKEGA----YWGTVAGVYVGMEYGVEKVRGTKDWKNAMIGGAFTGALVSAVGKNNRDKVVMDALTGGAI 135 (146)
Q Consensus 60 k~~~~~~lk~~g~~g~----~~g~vggvfsg~ec~ie~~Rgk~D~~Ns~~aGa~TGa~l~~~~G~~~~~~v~~ai~gaa~ 135 (146)
++|++.+++.+++++. .+|+.|++|+++||.|+.+|+||||.|++.+|+.||+.++.+.| ++++.++.+++ +|+
T Consensus 102 r~q~~~~~~n~~~rg~ftG~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~~g-~qa~~~~~a~~-aa~ 179 (191)
T COG5596 102 RLQLKEQLNNAGKRGFFTGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAG-PQAMPMGGAGF-AAF 179 (191)
T ss_pred HHHHhhccccccccccccccccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHHhhcc-ccccccCccch-hhh
Confidence 8899999999999975 67899999999999999999999999999999999999999999 99999999996 999
Q ss_pred HHHHHHhh
Q 036056 136 AAAAEFLS 143 (146)
Q Consensus 136 s~aie~~~ 143 (146)
|..++.+.
T Consensus 180 s~~~~~~~ 187 (191)
T COG5596 180 SAGITLAM 187 (191)
T ss_pred hhhHHhhh
Confidence 99988654
No 9
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=1.5e-05 Score=63.90 Aligned_cols=126 Identities=13% Similarity=0.076 Sum_probs=81.9
Q ss_pred CCCCCCccc---CCCCccccc--ccccCchHHHHHHHHHHHHHH----HHHHHHHHHHhhhhcCCCcchHHHHHHHHHhc
Q 036056 1 MPKSSFAGA---LTTPRVDVG--IDTGNDFLNHTVDGFLKIGAV----AATRAVAEDTYNIVKGGNFSRHHLEHALKKMC 71 (146)
Q Consensus 1 ~~~~~~~~~---~~~p~~~~~--~d~~~pc~~rtv~~~l~gg~~----Ga~~Gl~~ga~~~~~~g~~~k~~~~~~lk~~g 71 (146)
||.+.|-.+ ..+|+.+.+ -|.-.||.---..+|-...-. +.+|.-.+|-...+.. ......+.......-
T Consensus 1 ~~~s~~~~~~~~~~s~~~~~~lS~~e~d~~~~~~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~-g~f~ssl~y~t~~~~ 79 (191)
T COG5596 1 MVYSGFGLEQLSPPSPNAYNILSPEERDPCPLEKLADFMKAFSYSCIGKSALSGLKGFRLGGPS-GGFSSSLAYGTGLVH 79 (191)
T ss_pred CcccccCHhhcCCCCCCcccccChhhcCchhhhHHhhhccchhhcchhhhhhhccccccccccc-ccchhhccccccccc
Confidence 555555432 345666655 567789999999888774443 4444433333221111 111112222223344
Q ss_pred ccchhHH-HHHHHhhcchhhhhhhhhccchhHHHHHHHHHHHHhhhccCC--chhHHHH
Q 036056 72 KEGAYWG-TVAGVYVGMEYGVEKVRGTKDWKNAMIGGAFTGALVSAVGKN--NRDKVVM 127 (146)
Q Consensus 72 ~~g~~~g-~vggvfsg~ec~ie~~Rgk~D~~Ns~~aGa~TGa~l~~~~G~--~~~~~v~ 127 (146)
-.+.+|| +||++|+.++|+.+++|.|.|.||....|+.||..++..... -+..+|.
T Consensus 80 ~~g~nfg~vwGgl~~~i~~~~~r~q~~~~~~n~~~rg~ftG~n~GvlGl~y~~~ns~I~ 138 (191)
T COG5596 80 LLGLNFGGVWGGLFSTIDCTPFRLQLKEQLNNAGKRGFFTGKNLGVLGLIYAGINSIIT 138 (191)
T ss_pred ccCccccccccceeeccccchHHHHHhhccccccccccccccccceeeeecccchhhhh
Confidence 4567787 899999999999999999999999999999999988877663 3455666
No 10
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=97.53 E-value=0.00033 Score=47.79 Aligned_cols=67 Identities=19% Similarity=0.196 Sum_probs=56.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHHHHHhcccchhHHHHHHHhhcchh
Q 036056 23 NDFLNHTVDGFLKIGAVAATRAVAEDTYNIVKGGNFSRHHLEHALKKMCKEGAYWGTVAGVYVGMEY 89 (146)
Q Consensus 23 ~pc~~rtv~~~l~gg~~Ga~~Gl~~ga~~~~~~g~~~k~~~~~~lk~~g~~g~~~g~vggvfsg~ec 89 (146)
|.|..|.-.++.+|+.+|.+.|+..|+|...+.+.+++..++.+-+.+-..+..||.+=++=+.+.|
T Consensus 1 psc~~kikmG~~MG~~VG~~~G~l~G~~~~~r~g~~~~~~~~~lg~~~l~sg~tFG~Fm~iGs~IRc 67 (67)
T PF10247_consen 1 PSCFDKIKMGFMMGGAVGGAFGALFGTFSAFRYGARGRGLMRTLGKYMLGSGATFGFFMSIGSVIRC 67 (67)
T ss_pred CcHHHHHHHHHHHhhHHHhhhhhhhhhHHHhccCCCCcchHhHHhHHHhcchhHHHHHHhhhccccC
Confidence 6799999999999999999999999999999888888888888888888888888866554444433
No 11
>KOG4096 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.0012 Score=45.81 Aligned_cols=70 Identities=17% Similarity=0.250 Sum_probs=63.3
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHHHHHhcccchhHHHHHHHhhcchhh
Q 036056 21 TGNDFLNHTVDGFLKIGAVAATRAVAEDTYNIVKGGNFSRHHLEHALKKMCKEGAYWGTVAGVYVGMEYG 90 (146)
Q Consensus 21 ~~~pc~~rtv~~~l~gg~~Ga~~Gl~~ga~~~~~~g~~~k~~~~~~lk~~g~~g~~~g~vggvfsg~ec~ 90 (146)
..+.|..|.=.++.+|..+|.+-|+..|.|...+.+..++..++.+-|.|-..+..||++=++=+++.|.
T Consensus 3 ~qpSc~dKikmG~~mG~avG~a~G~lfGgf~~lR~g~~g~~~vr~iGkt~~~SagtFG~FM~igs~Ir~~ 72 (75)
T KOG4096|consen 3 QQPSCFDKIKMGLMMGGAVGGATGALFGGFAALRYGPRGRGLVRTIGKTMLQSAGTFGLFMGIGSGIRCG 72 (75)
T ss_pred CCccHHHHHHHHHHHHhhhhhhhhhhccchhheeecCChhHHHHHHhHHHHhccchhhhhhhhhhheecC
Confidence 3588999999999999999999999999999999999898888888888888899999888888888775
No 12
>KOG4608 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.82 E-value=0.00028 Score=58.89 Aligned_cols=56 Identities=18% Similarity=0.384 Sum_probs=46.0
Q ss_pred HHHHHHhcccchhHH----HHHHHhhcchhhhhhhhhccchhHHHHHHHHHHHHhhhccC
Q 036056 64 EHALKKMCKEGAYWG----TVAGVYVGMEYGVEKVRGTKDWKNAMIGGAFTGALVSAVGK 119 (146)
Q Consensus 64 ~~~lk~~g~~g~~~g----~vggvfsg~ec~ie~~Rgk~D~~Ns~~aGa~TGa~l~~~~G 119 (146)
.+..+...|.|..|| ++-+.|-++.-.+..+|+|||.+|=+++|++||+++...=|
T Consensus 121 d~air~farGgf~~G~R~alfttSff~l~t~l~vyRgk~a~~~fvaaga~tgsvF~~~~g 180 (270)
T KOG4608|consen 121 DAAIRGFARGGFRWGWRTALFTTSFFTLNTSLNVYRGKDALSHFVAAGAVTGSVFRINVG 180 (270)
T ss_pred HHHHHHHhhccccceeEEeeehhhHHHHHHHHHHHcCchhhhhhhccccceeeeEEeehh
Confidence 344455777777775 67777788888899999999999999999999999987766
No 13
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=91.25 E-value=0.29 Score=33.04 Aligned_cols=40 Identities=20% Similarity=0.149 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHHHHHhcc
Q 036056 33 FLKIGAVAATRAVAEDTYNIVKGGNFSRHHLEHALKKMCK 72 (146)
Q Consensus 33 ~l~gg~~Ga~~Gl~~ga~~~~~~g~~~k~~~~~~lk~~g~ 72 (146)
|+.|.++|++.|...+.+..|+.|.-.|.++....+.+..
T Consensus 1 F~~g~l~Ga~~Ga~~glL~aP~sG~e~R~~l~~~~~~~~~ 40 (74)
T PF12732_consen 1 FLLGFLAGAAAGAAAGLLFAPKSGKETREKLKDKAEDLKD 40 (74)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence 5778888888888888888888887777777777666443
No 14
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=86.31 E-value=5.8 Score=31.50 Aligned_cols=24 Identities=13% Similarity=0.037 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 036056 25 FLNHTVDGFLKIGAVAATRAVAED 48 (146)
Q Consensus 25 c~~rtv~~~l~gg~~Ga~~Gl~~g 48 (146)
|-.--..+.+.|+..+.+.|+...
T Consensus 17 ~G~af~~G~~~G~~~g~~~G~rns 40 (170)
T TIGR00980 17 FGGAFAMGTIGGSIFQAFKGFRNS 40 (170)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcC
Confidence 333444555555555555554443
No 15
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=83.32 E-value=1.9 Score=35.54 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhhccCCchhHHHHhHHHHHHHHHHHHHh
Q 036056 103 AMIGGAFTGALVSAVGKNNRDKVVMDALTGGAIAAAAEFL 142 (146)
Q Consensus 103 s~~aGa~TGa~l~~~~G~~~~~~v~~ai~gaa~s~aie~~ 142 (146)
+.++|+++|+.++...++....++|.++.|+++..++|-+
T Consensus 89 ga~~Ga~~G~~~g~~~~~~~g~~~G~GlaGalig~~ada~ 128 (215)
T PF05818_consen 89 GALAGAATGAAIGAYNSGSAGAAIGAGLAGALIGMIADAM 128 (215)
T ss_pred hHHHHhHHhhhhccccCCccchhhhhhHHHhHHHHHHhhh
Confidence 5677777777776444325667888677778888887743
No 16
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.03 E-value=2.9 Score=37.59 Aligned_cols=42 Identities=17% Similarity=0.329 Sum_probs=35.8
Q ss_pred chhHHHHHHHhhcchhhhhhhhhccchhHHHHHHHHHHHHhh
Q 036056 74 GAYWGTVAGVYVGMEYGVEKVRGTKDWKNAMIGGAFTGALVS 115 (146)
Q Consensus 74 g~~~g~vggvfsg~ec~ie~~Rgk~D~~Ns~~aGa~TGa~l~ 115 (146)
+.+.|.+-.+|.++.|.+.+++.|+|-.|++.||.+++-.+.
T Consensus 303 g~FlgsfvfIfkatsC~lr~v~n~dd~l~aifAgglAs~Smm 344 (460)
T KOG1398|consen 303 GSFLGSFVFIFKATSCALRKVANKDDKLVAIFAGGLASLSMM 344 (460)
T ss_pred hHHHHHHHHHHHhHHHHHHHhccCcHHHHHHHHhhhhhheee
Confidence 345567778999999999999999999999999999876543
No 17
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=72.35 E-value=11 Score=27.92 Aligned_cols=44 Identities=27% Similarity=0.265 Sum_probs=28.6
Q ss_pred cchhHHHHHHHHHHHHhhhccCC-chhHHHHhHHHHHHHHHHHHHh
Q 036056 98 KDWKNAMIGGAFTGALVSAVGKN-NRDKVVMDALTGGAIAAAAEFL 142 (146)
Q Consensus 98 ~D~~Ns~~aGa~TGa~l~~~~G~-~~~~~v~~ai~gaa~s~aie~~ 142 (146)
++-....+.|++.|++++.-.|+ ...++++.++ |+++.+++...
T Consensus 50 ~~~~~ga~~GA~~GA~~Ga~~G~~~~ga~~GAa~-Ga~~G~~~g~~ 94 (118)
T PF13436_consen 50 ENTAGGAAIGAAAGAAIGAIIGGNGRGAAIGAAA-GAAVGAAAGAA 94 (118)
T ss_pred hhHHHHHHHHHHHHHHHHhhcCCCccchHHHHHH-HHHHHHHhhhh
Confidence 45555667777788888777774 4566666655 56665655543
No 18
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=72.14 E-value=32 Score=27.16 Aligned_cols=34 Identities=12% Similarity=-0.050 Sum_probs=17.9
Q ss_pred CCcccccccccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 036056 12 TPRVDVGIDTGNDFLNHTVDGFLKIGAVAATRAVAED 48 (146)
Q Consensus 12 ~p~~~~~~d~~~pc~~rtv~~~l~gg~~Ga~~Gl~~g 48 (146)
.|=++.++|. |-.--..+.+.|+..+.+.|+-..
T Consensus 9 ~pcp~ri~dd---~G~af~~G~vgG~~~~~~~G~rns 42 (164)
T PTZ00236 9 EPCPDRIIED---MGGAFSMGCIGGFIWHFLKGMRNS 42 (164)
T ss_pred CCCchHHHHh---ccHHHHHHHHHHHHHHHHHHHHhC
Confidence 4555555544 334445555566666666665443
No 19
>PF13488 Gly-zipper_Omp: Glycine zipper
Probab=64.05 E-value=27 Score=21.79 Aligned_cols=38 Identities=26% Similarity=0.273 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhhccCCc-hhHHHHhHHHHHHHHHHHHHhh
Q 036056 105 IGGAFTGALVSAVGKNN-RDKVVMDALTGGAIAAAAEFLS 143 (146)
Q Consensus 105 ~aGa~TGa~l~~~~G~~-~~~~v~~ai~gaa~s~aie~~~ 143 (146)
.-|++.|+++....++| +..+++.++ ++++-..+.+..
T Consensus 4 ~iGA~~Ga~iG~~~g~~~~ga~iGa~v-Ga~~G~~ig~~~ 42 (46)
T PF13488_consen 4 AIGAAAGAAIGAATGGPGKGAAIGAAV-GAAVGAAIGNYM 42 (46)
T ss_pred HHHHHHHHHHHHHhCCchhhHHHHHHH-HHHHHHHHHHHH
Confidence 45777788886666643 555665544 677777766543
No 20
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.77 E-value=22 Score=32.16 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=46.0
Q ss_pred HHHHHHHhcccchhHHHHHHHhhcchhhhhhhhhccchhHHHHHHHHHHHHhh
Q 036056 63 LEHALKKMCKEGAYWGTVAGVYVGMEYGVEKVRGTKDWKNAMIGGAFTGALVS 115 (146)
Q Consensus 63 ~~~~lk~~g~~g~~~g~vggvfsg~ec~ie~~Rgk~D~~Ns~~aGa~TGa~l~ 115 (146)
...+...+++.++.++.-.+-|-...|.+.+++||.-++|+..+|++.+--++
T Consensus 71 ~~k~~~~~cqs~lflvtn~~~f~al~C~lRkwlgkftp~t~glv~s~las~ia 123 (460)
T KOG1398|consen 71 DLKVREEACQSGLFLVTNTGSFHALRCCLRKWLGKFTPLTSGLVGSVLASSIA 123 (460)
T ss_pred HHHHHHHHHhhceeeeechHHHHHHHHHHHHHhcccCcccHHHHHHHHhhhhh
Confidence 55677788888888888888999999999999999999999999999885554
No 21
>PF10439 Bacteriocin_IIc: Bacteriocin class II with double-glycine leader peptide; InterPro: IPR019493 Bacteriocins are proteinaceous toxins produced by bacteria to inhibit the growth of similar or closely related strains. The producer bacteria are protected from the effects of their own bacteriocins by production of a specific immunity protein which is co-transcribed with the genes encoding the bacteriocins, e.g. IPR015046 from INTERPRO. The bacteriocins are structurally more specific than their immunity-protein counterparts. Typically, production of the bacteriocin gene is from within an operon carrying up to 6 genes including a typical two-component regulatory system (R and H), a small peptide pheromone (C), and a dedicated ABC transporter (A and -B) as well as an immunity protein []. The ABC transporter is thought to recognise the N termini of both the pheromone and the bacteriocins and to transport these peptides across the cytoplasmic membrane, concurrent with cleavage at the conserved double-glycine motif. Cleaved extracellular C can then bind to the sensor kinase, H, resulting in activation of R and up-regulation of the entire gene cluster via binding to consensus sequences within each promoter []. It seems likely that the whole regulon is carried on a transmissible plasmid which is passed between closely related Firmicute species since many clinical isolates from different Firmicutes can produce at least two bacteriocins, and the same bacteriocins can be produced by different species. The proteins in this entry include amylovorin-L, lactacin-F and salivaricin CRL 1328, all of them class IIb two-peptide bacteriocins.
Probab=59.72 E-value=27 Score=23.01 Aligned_cols=36 Identities=31% Similarity=0.380 Sum_probs=23.5
Q ss_pred chhHHHHHHHHHHHHhhhccCCchhHHHHhHHHHHHH
Q 036056 99 DWKNAMIGGAFTGALVSAVGKNNRDKVVMDALTGGAI 135 (146)
Q Consensus 99 D~~Ns~~aGa~TGa~l~~~~G~~~~~~v~~ai~gaa~ 135 (146)
+.+..+++++++|++.....+ +....+.+++.++++
T Consensus 24 ~~~~~~~~~~~~G~~~G~~~g-~~~g~~~Ga~~G~~~ 59 (65)
T PF10439_consen 24 NCVGGVGGGAAGGAAAGAAGG-PPVGAVAGAIVGAAV 59 (65)
T ss_pred HHHHHHHHHHHHHHHHhhhcc-chhHHHHHHHHHHHH
Confidence 355678889999999988888 544344444444443
No 22
>KOG0759 consensus Mitochondrial oxoglutarate/malate carrier proteins [Energy production and conversion]
Probab=56.11 E-value=23 Score=30.46 Aligned_cols=87 Identities=20% Similarity=0.265 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc-----CCCcchHHHHHHHHHhcccc---hhHHHHHHH-----hhcc-----hhhh
Q 036056 30 VDGFLKIGAVAATRAVAEDTYNIVK-----GGNFSRHHLEHALKKMCKEG---AYWGTVAGV-----YVGM-----EYGV 91 (146)
Q Consensus 30 v~~~l~gg~~Ga~~Gl~~ga~~~~~-----~g~~~k~~~~~~lk~~g~~g---~~~g~vggv-----fsg~-----ec~i 91 (146)
+.-|+.|+.+|...+.+.-..|..+ +++..|+++....+-+.++| .+-|+.+++ |+.+ |-.-
T Consensus 4 ~~~~~~GGla~~~A~~~thPlDLvKvrmQ~~~~~~k~si~~~~~i~k~eG~la~Y~GlSA~lLRQ~tYTt~R~g~Y~~l~ 83 (286)
T KOG0759|consen 4 LMPWYFGGLAGMGATCVTHPLDLVKVRMQLQGEHGKLSIAQLTKILKNEGILAFYNGLSAALLRQATYTTTRFGLYEMLK 83 (286)
T ss_pred CcceeeccHHHHHHHHHcCcHHHHHHHHHHccccccchHHHHHHHHHhcChHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778888888888877776443 33434666666655555554 566777766 3333 3333
Q ss_pred hhhhhccc-----hhHHHHHHHHHHHHhhhc
Q 036056 92 EKVRGTKD-----WKNAMIGGAFTGALVSAV 117 (146)
Q Consensus 92 e~~Rgk~D-----~~Ns~~aGa~TGa~l~~~ 117 (146)
++++ +.| ..+.+..|+++|++=+.-
T Consensus 84 ~~~~-~~~~~~~~~~~k~~~g~~AGa~Gg~v 113 (286)
T KOG0759|consen 84 DRYT-DPDGKPLPLLGKALLGGIAGAIGGVV 113 (286)
T ss_pred hhhc-ccccCCccHHHHHHHHHHHHHhhhhc
Confidence 4455 344 678888888888654433
No 23
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=55.75 E-value=16 Score=25.22 Aligned_cols=35 Identities=14% Similarity=-0.064 Sum_probs=21.1
Q ss_pred CCCcccccccccCchHHHHHHHHHHHHHHHHHHHH
Q 036056 11 TTPRVDVGIDTGNDFLNHTVDGFLKIGAVAATRAV 45 (146)
Q Consensus 11 ~~p~~~~~~d~~~pc~~rtv~~~l~gg~~Ga~~Gl 45 (146)
..|+.+..-+-++-|+..++.-...|.++|++.++
T Consensus 11 ~~~se~~~~~kwD~cl~~~l~k~~~G~~~G~~~s~ 45 (75)
T PF04418_consen 11 TPPSEDELGEKWDRCLSDTLVKTGLGFGIGVVFSL 45 (75)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 34555555555566666666666666666666664
No 24
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=46.92 E-value=37 Score=25.44 Aligned_cols=26 Identities=19% Similarity=0.072 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCC
Q 036056 32 GFLKIGAVAATRAVAEDTYNIVKGGN 57 (146)
Q Consensus 32 ~~l~gg~~Ga~~Gl~~ga~~~~~~g~ 57 (146)
.|+.|..+|++.|...+....|+.+-
T Consensus 6 ~~l~G~liGgiiGa~aaLL~AP~sGk 31 (115)
T COG4980 6 DFLFGILIGGIIGAAAALLFAPKSGK 31 (115)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCcccH
Confidence 57778888888887777777777664
No 25
>PF08560 DUF1757: Protein of unknown function (DUF1757); InterPro: IPR013869 This entry shows proteins that are about 150 amino acids in length and have no known function.
Probab=45.22 E-value=1.5e+02 Score=23.12 Aligned_cols=35 Identities=11% Similarity=-0.154 Sum_probs=31.6
Q ss_pred CcccccccccCchHHHHHHHHHHHHHHHHHHHHHH
Q 036056 13 PRVDVGIDTGNDFLNHTVDGFLKIGAVAATRAVAE 47 (146)
Q Consensus 13 p~~~~~~d~~~pc~~rtv~~~l~gg~~Ga~~Gl~~ 47 (146)
=+.++++|.=||....+.--.+++.-+|++.|...
T Consensus 11 ~~~~~l~~iP~P~~el~iHvt~k~~q~gs~lGsl~ 45 (155)
T PF08560_consen 11 LSDEELQDIPNPKTELTIHVTFKGAQAGSFLGSLI 45 (155)
T ss_pred cCHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999998877
No 26
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=42.15 E-value=41 Score=28.31 Aligned_cols=47 Identities=26% Similarity=0.375 Sum_probs=26.7
Q ss_pred hhccchhHHHHHHHHHHHHhhh-----ccCCchhHHHHhHHHHHHHHHHHHHh
Q 036056 95 RGTKDWKNAMIGGAFTGALVSA-----VGKNNRDKVVMDALTGGAIAAAAEFL 142 (146)
Q Consensus 95 Rgk~D~~Ns~~aGa~TGa~l~~-----~~G~~~~~~v~~ai~gaa~s~aie~~ 142 (146)
|..+-+.+.-+.|+++||.++. ..+ .-..++|.+++++++.+++|-+
T Consensus 107 ~~a~~~L~~Gy~ga~~Gaa~G~~~~~y~~~-~ag~~~G~Glagglig~~ada~ 158 (243)
T PRK13731 107 RESQGWLNRGYEGAAVGAALGAGITGYNSN-SAGATLGVGLAAGLVGMAADAM 158 (243)
T ss_pred HHHHHHHhhchhhHHHHHHhhhhhhcccCC-cchhhHHHHHHHHHHHHHhhhh
Confidence 3333344434445555554432 333 4556777777788888888743
No 27
>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism]
Probab=40.99 E-value=58 Score=30.10 Aligned_cols=54 Identities=22% Similarity=0.223 Sum_probs=38.3
Q ss_pred hhhhhhhhhccchhHHHHHHHHHHHHhhhccCC----chhHHHHhHHHHHHHHHHHHHhh
Q 036056 88 EYGVEKVRGTKDWKNAMIGGAFTGALVSAVGKN----NRDKVVMDALTGGAIAAAAEFLS 143 (146)
Q Consensus 88 ec~ie~~Rgk~D~~Ns~~aGa~TGa~l~~~~G~----~~~~~v~~ai~gaa~s~aie~~~ 143 (146)
-|.+.++|-|+=-.+.++-|+++| +++.+.|- |+.+++.+++. +.++-+...++
T Consensus 275 ~~~~d~~~~~kwsv~~~cnG~laG-lVaiT~gc~~v~pWaAiviG~va-~~~~~~~~kL~ 332 (500)
T KOG0682|consen 275 WLIIDYLRHGKWSVIGLCNGILAG-LVAITPGCGVVEPWAAIVIGAVA-GLVCNAANKLK 332 (500)
T ss_pred hhhhhhhhcCCcchhhhHHHHHHH-HHhhcCCCcccCcHHHHHHhHHH-HHHHHHHHHHH
Confidence 456677777775667777788755 66777663 89998888885 67767666555
No 28
>PF13441 Gly-zipper_YMGG: YMGG-like Gly-zipper
Probab=39.03 E-value=40 Score=21.21 Aligned_cols=36 Identities=28% Similarity=0.315 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhhhccCC-chhHHHHhHHHHHHHHHH
Q 036056 102 NAMIGGAFTGALVSAVGKN-NRDKVVMDALTGGAIAAA 138 (146)
Q Consensus 102 Ns~~aGa~TGa~l~~~~G~-~~~~~v~~ai~gaa~s~a 138 (146)
+...-|+++|+++..-.++ ++.++++.++ ++....+
T Consensus 5 ~GA~iGA~~GA~iG~~~g~~~~GA~iGA~~-Ga~~G~~ 41 (45)
T PF13441_consen 5 RGAAIGAAAGAVIGAIIGNGGKGAAIGAAA-GALAGAA 41 (45)
T ss_pred hHHHHHHHHHHHHHHhhCCCcccchhhhhh-hhhhhhh
Confidence 3455667777777655553 5666776665 3444333
No 29
>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.56 E-value=73 Score=25.38 Aligned_cols=123 Identities=15% Similarity=0.023 Sum_probs=82.2
Q ss_pred CCCccccc---ccccCchHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhcCC---Cc---chHHHHHHHHHhcccc
Q 036056 11 TTPRVDVG---IDTGNDFLNHTV-------DGFLKIGAVAATRAVAEDTYNIVKGG---NF---SRHHLEHALKKMCKEG 74 (146)
Q Consensus 11 ~~p~~~~~---~d~~~pc~~rtv-------~~~l~gg~~Ga~~Gl~~ga~~~~~~g---~~---~k~~~~~~lk~~g~~g 74 (146)
++|+++-. .+.+.|=..|.+ .-.++.++.|...|...|.+-..-.. +| .++-.+.++|+|+++.
T Consensus 14 ~~p~~~~~l~pe~~~~~~e~r~le~~n~c~~Ka~~sgV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~~kdMg~r~ 93 (168)
T KOG3225|consen 14 NSPKQYSLLTPEEVGDPTEMRYLEEENSCAVKAVKSGVTGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQVAKDMGQRS 93 (168)
T ss_pred CCCccccccCccccCChHHHHHHHHhcchhHHHHHhhccccchhhhHHhhhhhcccCCCCCchhhhhhHHHHHHHHHhhh
Confidence 56666544 334444444443 34788999999999999998766552 23 2346667779999999
Q ss_pred hhHHHHHHHhhcchhhhhhhhhccchhHHHHHHHHHHHHhhhccCCchhHHHHhHHHHHHH
Q 036056 75 AYWGTVAGVYVGMEYGVEKVRGTKDWKNAMIGGAFTGALVSAVGKNNRDKVVMDALTGGAI 135 (146)
Q Consensus 75 ~~~g~vggvfsg~ec~ie~~Rgk~D~~Ns~~aGa~TGa~l~~~~G~~~~~~v~~ai~gaa~ 135 (146)
...+.-=++--.+-.++|-+=.+---++=..=|+++|-+-...-+ -++. ...+..|++.
T Consensus 94 ~s~~knF~~iGlvfsg~Ec~iE~~RAK~D~~NgaiaG~vtGg~l~-~raG-p~a~~~G~ag 152 (168)
T KOG3225|consen 94 GSYAKNFAIIGLVFSGVECLIESFRAKSDWYNGAIAGCVTGGSLG-YRAG-PKAAAIGCAG 152 (168)
T ss_pred cchhhhhhhhhhhehhHHHHHHHHHhhhchhcceeeeeeeccchh-hccc-chhhhhchhH
Confidence 998866566667777788877777778888888888777655555 3443 3333334443
No 30
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=37.98 E-value=13 Score=24.29 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=15.9
Q ss_pred chhhhhhhhh-ccchhHH--HHHHHH
Q 036056 87 MEYGVEKVRG-TKDWKNA--MIGGAF 109 (146)
Q Consensus 87 ~ec~ie~~Rg-k~D~~Ns--~~aGa~ 109 (146)
++-.++.+|. +|||.|- +|.|.+
T Consensus 9 ~~~~~~~lR~~RHD~~NhLqvI~gll 34 (62)
T PF14689_consen 9 LEELIDSLRAQRHDFLNHLQVIYGLL 34 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4556677776 8999996 455554
No 31
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=37.80 E-value=30 Score=20.69 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=17.5
Q ss_pred cchhHHHHHHHHHHHHhhhc
Q 036056 98 KDWKNAMIGGAFTGALVSAV 117 (146)
Q Consensus 98 ~D~~Ns~~aGa~TGa~l~~~ 117 (146)
||..-++++|.+++.+++.-
T Consensus 12 hDLAAP~iagIi~s~iv~w~ 31 (35)
T PF13940_consen 12 HDLAAPIIAGIIASLIVGWL 31 (35)
T ss_pred HHhHhHHHHHHHHHHHHHHH
Confidence 89999999999999988643
No 32
>PRK11280 hypothetical protein; Provisional
Probab=35.69 E-value=38 Score=27.01 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhhhccCC---chhHHHHhHHHHHHHHHHHH
Q 036056 104 MIGGAFTGALVSAVGKN---NRDKVVMDALTGGAIAAAAE 140 (146)
Q Consensus 104 ~~aGa~TGa~l~~~~G~---~~~~~v~~ai~gaa~s~aie 140 (146)
.+.|++.|++++..-|+ ...+.+.+|+.|+.+...++
T Consensus 68 tv~Gav~Gg~~G~~iGgG~Gr~~at~~Ga~~G~~~G~~i~ 107 (170)
T PRK11280 68 SVLGAVAGGVLGHQFGGGRGKDVATVAGALGGGYAGNQIQ 107 (170)
T ss_pred HHHHHHHHHHhhhhccCCCccHHHHHHHHHHHHHHHHHHH
Confidence 45555667777654432 23444555565666665554
No 33
>KOG4096 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.81 E-value=33 Score=23.90 Aligned_cols=65 Identities=9% Similarity=-0.055 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHHHHHhcccchhHHHHHHHhhcchhhh
Q 036056 27 NHTVDGFLKIGAVAATRAVAEDTYNIVKGGNFSRHHLEHALKKMCKEGAYWGTVAGVYVGMEYGV 91 (146)
Q Consensus 27 ~rtv~~~l~gg~~Ga~~Gl~~ga~~~~~~g~~~k~~~~~~lk~~g~~g~~~g~vggvfsg~ec~i 91 (146)
+.+.|-+-+|..+|.+.|...|...-.-....-..+=++.++.+||.-.+-+-.=++|=++-+.|
T Consensus 5 pSc~dKikmG~~mG~avG~a~G~lfGgf~~lR~g~~g~~~vr~iGkt~~~SagtFG~FM~igs~I 69 (75)
T KOG4096|consen 5 PSCFDKIKMGLMMGGAVGGATGALFGGFAALRYGPRGRGLVRTIGKTMLQSAGTFGLFMGIGSGI 69 (75)
T ss_pred ccHHHHHHHHHHHHhhhhhhhhhhccchhheeecCChhHHHHHHhHHHHhccchhhhhhhhhhhe
Confidence 35677788888888888877777543333344455666666666666655543334444444433
No 34
>KOG0770 consensus Predicted mitochondrial carrier protein [Energy production and conversion]
Probab=33.25 E-value=50 Score=28.71 Aligned_cols=59 Identities=22% Similarity=0.258 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcccchhHHHHHHH-----hhcchhhh-hhhhhcc---------chhHHHHHHHHHHHHhhhccC
Q 036056 61 HHLEHALKKMCKEGAYWGTVAGV-----YVGMEYGV-EKVRGTK---------DWKNAMIGGAFTGALVSAVGK 119 (146)
Q Consensus 61 ~~~~~~lk~~g~~g~~~g~vggv-----fsg~ec~i-e~~Rgk~---------D~~Ns~~aGa~TGa~l~~~~G 119 (146)
-.++.+.|.=|-+++++|.++.+ |+++.-.. |++|+-- |=.|+++-+.+||++-+.-+|
T Consensus 177 ga~k~i~KeeG~k~lf~GY~aTlaRDvPFsglq~~FYEklrqla~~~~qK~~~~g~~s~~~elvtG~lAGglag 250 (353)
T KOG0770|consen 177 GAFKAIWKEEGPKGLFAGYWATLARDVPFSGLQVVFYEKLRQLADQGKQKFPQYGVNSSIEELVTGGLAGGLAG 250 (353)
T ss_pred HHHHHHHHHhCcchhhhHHHHHHHhcCCchhhHHHHHHHHHHHHHhhhhccccccccccHHHHHhhhccccccc
Confidence 36677888888889999988876 77776665 7777532 446888888888877654444
No 35
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=29.81 E-value=2.1e+02 Score=20.36 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=20.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Q 036056 23 NDFLNHTVDGFLKIGAVAATRAVAE 47 (146)
Q Consensus 23 ~pc~~rtv~~~l~gg~~Ga~~Gl~~ 47 (146)
+.+...++.+|+.|.+.|++.++.+
T Consensus 4 ~~~~~~~~~g~~~G~~~G~~~~~~~ 28 (128)
T PF02466_consen 4 ERILDSTGKGFVAGAVFGGFIGAIS 28 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788889999999999998874
No 36
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.60 E-value=1.7e+02 Score=22.03 Aligned_cols=26 Identities=15% Similarity=-0.043 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036056 27 NHTVDGFLKIGAVAATRAVAEDTYNI 52 (146)
Q Consensus 27 ~rtv~~~l~gg~~Ga~~Gl~~ga~~~ 52 (146)
.+....|+.|-.+|+..|.+.+-|..
T Consensus 46 ~klssefIsGilVGa~iG~llD~~ag 71 (116)
T COG5336 46 FKLSSEFISGILVGAGIGWLLDKFAG 71 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45666789999999999998888753
No 37
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=26.94 E-value=1.1e+02 Score=22.35 Aligned_cols=23 Identities=17% Similarity=0.024 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 036056 27 NHTVDGFLKIGAVAATRAVAEDT 49 (146)
Q Consensus 27 ~rtv~~~l~gg~~Ga~~Gl~~ga 49 (146)
.+++.+.+.|+++|++.|.+.|.
T Consensus 50 ~~~~~ga~~GA~~GA~~Ga~~G~ 72 (118)
T PF13436_consen 50 ENTAGGAAIGAAAGAAIGAIIGG 72 (118)
T ss_pred hhHHHHHHHHHHHHHHHHhhcCC
Confidence 34444445555555555544443
No 38
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=24.07 E-value=1.1e+02 Score=24.84 Aligned_cols=39 Identities=18% Similarity=0.322 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhhccCC----chhHHHHhHHHHHHHHHHHHHh
Q 036056 103 AMIGGAFTGALVSAVGKN----NRDKVVMDALTGGAIAAAAEFL 142 (146)
Q Consensus 103 s~~aGa~TGa~l~~~~G~----~~~~~v~~ai~gaa~s~aie~~ 142 (146)
..+.|+++|+++..-.|+ -+.+++++++ |+++..++-|+
T Consensus 38 ga~~Ga~~Ga~~G~~~g~~~~~~~~a~~ga~~-G~~~G~~~g~~ 80 (219)
T PRK10510 38 GAGIGSLVGAGIGALSSSKKDRGKGALIGAAA-GAALGGGVGYY 80 (219)
T ss_pred hhHHHHHHHHHHHhhhcCCCcccchhhhHhHH-Hhhhhhhhhhh
Confidence 456677778777654331 1345566555 46666666544
No 39
>PF14241 DUF4341: Domain of unknown function (DUF4341)
Probab=23.93 E-value=86 Score=20.52 Aligned_cols=22 Identities=23% Similarity=0.676 Sum_probs=18.5
Q ss_pred hhhccchhHHHHHHHHHHHHhh
Q 036056 94 VRGTKDWKNAMIGGAFTGALVS 115 (146)
Q Consensus 94 ~Rgk~D~~Ns~~aGa~TGa~l~ 115 (146)
.+.+.||.=..+.|.+.|+.+.
T Consensus 40 ~~~~~~W~~~fl~Gl~~g~~l~ 61 (62)
T PF14241_consen 40 NKPDRDWRLAFLAGLILGGFLA 61 (62)
T ss_pred CCCCccHHHHHHHHHHHHHHHh
Confidence 5667889999999999998874
No 40
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=23.83 E-value=77 Score=26.33 Aligned_cols=34 Identities=29% Similarity=0.403 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHhhh-ccCCchhHHHHhHHHHHHHH
Q 036056 101 KNAMIGGAFTGALVSA-VGKNNRDKVVMDALTGGAIA 136 (146)
Q Consensus 101 ~Ns~~aGa~TGa~l~~-~~G~~~~~~v~~ai~gaa~s 136 (146)
.+....|+.+|++++. -.| |...++|.++ |+.+.
T Consensus 40 ~~~~~~g~~~ga~~g~~~gg-~~G~~~G~~~-G~~~g 74 (239)
T TIGR03789 40 DQEALIGLGSGALLGALVGG-PVGAIIGGIT-GGLIG 74 (239)
T ss_pred ccchhhhHHHHHHHhhhhcc-HHHHHHHHHH-HHHhh
Confidence 3344447777888864 445 6554554444 44443
No 41
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=20.91 E-value=2.8e+02 Score=18.70 Aligned_cols=39 Identities=10% Similarity=0.016 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHhh---hhcCC-CcchHHHHHHHHHhccc
Q 036056 35 KIGAVAATRAVAEDTYN---IVKGG-NFSRHHLEHALKKMCKE 73 (146)
Q Consensus 35 ~gg~~Ga~~Gl~~ga~~---~~~~g-~~~k~~~~~~lk~~g~~ 73 (146)
....+|++-|++.+-+- ..++- .-....++.+..+||++
T Consensus 5 lali~G~~~Gff~ar~~~~k~l~~NPpine~mir~M~~QMG~k 47 (64)
T PF03672_consen 5 LALIVGAVIGFFIARKYMEKQLKENPPINEKMIRAMMMQMGRK 47 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCC
Confidence 34445555555554432 11111 12345777777777765
No 42
>PF12488 DUF3704: Protein of unknown function (DUF3704) ; InterPro: IPR022173 This domain family is found in eukaryotes, and is approximately 30 amino acids in length.
Probab=20.07 E-value=37 Score=19.28 Aligned_cols=12 Identities=42% Similarity=0.739 Sum_probs=9.9
Q ss_pred CCCCCCcccCCC
Q 036056 1 MPKSSFAGALTT 12 (146)
Q Consensus 1 ~~~~~~~~~~~~ 12 (146)
||++.+.|+..+
T Consensus 11 Mp~s~iagss~s 22 (27)
T PF12488_consen 11 MPRSGIAGSSGS 22 (27)
T ss_pred eeecceeecccc
Confidence 899999988765
Done!