Query 036056
Match_columns 146
No_of_seqs 148 out of 353
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 15:08:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036056.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036056hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2g9p_A Antimicrobial peptide l 23.7 21 0.00073 18.9 0.4 12 87-98 15-26 (26)
2 1ixm_A SPO0B, protein (sporula 22.8 31 0.0011 26.1 1.4 24 86-109 17-43 (192)
3 2lck_A Mitochondrial uncouplin 22.5 2.6E+02 0.0091 21.4 8.4 86 29-114 104-216 (303)
4 3l2c_A Forkhead box protein O4 20.8 74 0.0025 22.3 2.9 37 65-104 35-77 (110)
5 2hjm_A Hypothetical protein PF 19.1 2.2E+02 0.0074 19.9 5.0 35 84-119 32-66 (103)
6 3bpy_A FORK head domain, forkh 17.6 1E+02 0.0035 20.5 2.9 23 82-104 30-58 (85)
7 4ath_A MITF, microphthalmia-as 15.6 62 0.0021 21.9 1.4 14 132-145 31-44 (83)
8 1dx0_A Prion protein; brain, r 14.1 1.3E+02 0.0044 23.8 3.1 15 19-33 162-176 (219)
9 2imj_A Hypothetical protein DU 13.5 40 0.0014 25.6 0.0 17 87-103 16-32 (166)
10 2i3t_B Spindle assembly checkp 13.5 46 0.0016 20.9 0.3 17 86-102 24-46 (54)
No 1
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=23.72 E-value=21 Score=18.90 Aligned_cols=12 Identities=42% Similarity=0.858 Sum_probs=8.8
Q ss_pred chhhhhhhhhcc
Q 036056 87 MEYGVEKVRGTK 98 (146)
Q Consensus 87 ~ec~ie~~Rgk~ 98 (146)
+.+.+.+.|+||
T Consensus 15 isyavkkargkh 26 (26)
T 2g9p_A 15 ISYAVKKARGKH 26 (26)
T ss_dssp HHHHHHHTTCCC
T ss_pred HHHHHHHHccCC
Confidence 456778888886
No 2
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=22.80 E-value=31 Score=26.07 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=13.4
Q ss_pred cchhhhhhhhh-ccchhH--HHHHHHH
Q 036056 86 GMEYGVEKVRG-TKDWKN--AMIGGAF 109 (146)
Q Consensus 86 g~ec~ie~~Rg-k~D~~N--s~~aGa~ 109 (146)
+++-.++.+|. +|||.| -+|.|.+
T Consensus 17 ~~~~~~~~LR~qrHdf~NkLqvI~GLl 43 (192)
T 1ixm_A 17 LTNELIHLLGHSRHDWMNKLQLIKGNL 43 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34445556665 677777 3455543
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=22.48 E-value=2.6e+02 Score=21.39 Aligned_cols=86 Identities=13% Similarity=0.069 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc-----CC--------CcchHHHHHHHHHhcccchhHHH----------HHHHhh
Q 036056 29 TVDGFLKIGAVAATRAVAEDTYNIVK-----GG--------NFSRHHLEHALKKMCKEGAYWGT----------VAGVYV 85 (146)
Q Consensus 29 tv~~~l~gg~~Ga~~Gl~~ga~~~~~-----~g--------~~~k~~~~~~lk~~g~~g~~~g~----------vggvfs 85 (146)
....++.|+..|.+-.++.-..|..+ +. ......+++++++=|-++.+=|. .+..|.
T Consensus 104 ~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~ 183 (303)
T 2lck_A 104 IGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELV 183 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHH
Confidence 34567777777777766665555322 11 11224455556655555544331 122344
Q ss_pred cchhhhhhhhh----ccchhHHHHHHHHHHHHh
Q 036056 86 GMEYGVEKVRG----TKDWKNAMIGGAFTGALV 114 (146)
Q Consensus 86 g~ec~ie~~Rg----k~D~~Ns~~aGa~TGa~l 114 (146)
..|..-+.+.. +++.+..+++|+++|.+-
T Consensus 184 ~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~ 216 (303)
T 2lck_A 184 TYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCT 216 (303)
T ss_dssp HHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCchHHHHHHHHHHHHHH
Confidence 44544443332 234556678888877643
No 4
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=20.79 E-value=74 Score=22.30 Aligned_cols=37 Identities=19% Similarity=0.300 Sum_probs=25.2
Q ss_pred HHHHHhcccchhHHHHHHHhhcchhhhhhhhhcc------chhHHH
Q 036056 65 HALKKMCKEGAYWGTVAGVYVGMEYGVEKVRGTK------DWKNAM 104 (146)
Q Consensus 65 ~~lk~~g~~g~~~g~vggvfsg~ec~ie~~Rgk~------D~~Ns~ 104 (146)
.+++......+... .+|.-++--..++|.+. .|.|+|
T Consensus 35 ~AI~~sp~~~LtL~---eIY~~I~~~fPyyr~~~~~~s~~gWqNSI 77 (110)
T 3l2c_A 35 QAIESAPEKRLTLA---QIYEWMVRTVPYFKDKGDSNSSAGWKNSI 77 (110)
T ss_dssp HHHHHSTTSCBCHH---HHHHHHHHHCGGGTTCTTCCTTSHHHHHH
T ss_pred HHHHhCCccCcCHH---HHHHHHHHhCchhhcCccccCCCCcccch
Confidence 34444444444433 78888888888999764 599997
No 5
>2hjm_A Hypothetical protein PF1176; singleton protein PF1176, structural genomics, secsg, PSI, P structure initiative; 2.90A {Pyrococcus furiosus}
Probab=19.14 E-value=2.2e+02 Score=19.88 Aligned_cols=35 Identities=31% Similarity=0.517 Sum_probs=30.0
Q ss_pred hhcchhhhhhhhhccchhHHHHHHHHHHHHhhhccC
Q 036056 84 YVGMEYGVEKVRGTKDWKNAMIGGAFTGALVSAVGK 119 (146)
Q Consensus 84 fsg~ec~ie~~Rgk~D~~Ns~~aGa~TGa~l~~~~G 119 (146)
|-.++-++|+-||+| +.+.-|=|++-|-+...+..
T Consensus 32 Fi~Ln~glEskrGe~-Fv~vsIlGFlEGiLttLK~K 66 (103)
T 2hjm_A 32 FITLTHGIEKTRGEA-FAKASIYGFLEGILTTLKMK 66 (103)
T ss_dssp HHHTTSHHHHHHCHH-HHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHhhhHhhhchHH-HHHHHHHHHHHHHHHHHHHH
Confidence 667788999999987 99999999999988877665
No 6
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=17.59 E-value=1e+02 Score=20.51 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=18.2
Q ss_pred HHhhcchhhhhhhhhcc------chhHHH
Q 036056 82 GVYVGMEYGVEKVRGTK------DWKNAM 104 (146)
Q Consensus 82 gvfsg~ec~ie~~Rgk~------D~~Ns~ 104 (146)
.+|.-++--...+|.+. .|.|||
T Consensus 30 eIY~~i~~~fpyy~~~~~~~s~~gWqNSI 58 (85)
T 3bpy_A 30 QIYEWMVRTVPYFKDKGDSNSSAGWKNSI 58 (85)
T ss_dssp HHHHHHHHHCGGGTTCTTCCTTSHHHHHH
T ss_pred HHHHHHHHhCcchhcCccCccCCCcchhh
Confidence 77888888888888753 699987
No 7
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=15.58 E-value=62 Score=21.89 Aligned_cols=14 Identities=14% Similarity=0.401 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhhcc
Q 036056 132 GGAIAAAAEFLSYR 145 (146)
Q Consensus 132 gaa~s~aie~~~~~ 145 (146)
|+.+..++||+++|
T Consensus 31 g~IL~ksvdYI~~L 44 (83)
T 4ath_A 31 GTILKASVDYIRKL 44 (83)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45677889999876
No 8
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A
Probab=14.14 E-value=1.3e+02 Score=23.84 Aligned_cols=15 Identities=27% Similarity=0.178 Sum_probs=11.6
Q ss_pred ccccCchHHHHHHHH
Q 036056 19 IDTGNDFLNHTVDGF 33 (146)
Q Consensus 19 ~d~~~pc~~rtv~~~ 33 (146)
-.|++.|.|+||...
T Consensus 162 e~Fv~~C~N~Tv~~q 176 (219)
T 1dx0_A 162 NNFVHDCVNITVKEH 176 (219)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc
Confidence 347789999997665
No 9
>2imj_A Hypothetical protein DUF1348; alpha beta protein, structural genomics, PSI-2, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} SCOP: d.17.4.23
Probab=13.52 E-value=40 Score=25.61 Aligned_cols=17 Identities=35% Similarity=0.349 Sum_probs=15.1
Q ss_pred chhhhhhhhhccchhHH
Q 036056 87 MEYGVEKVRGTKDWKNA 103 (146)
Q Consensus 87 ~ec~ie~~Rgk~D~~Ns 103 (146)
.|.+++++|..+|-||+
T Consensus 16 ~EtA~~KVr~AEDaWNs 32 (166)
T 2imj_A 16 RESAIEKIRLAEDGWNS 32 (166)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhcc
Confidence 47789999999999997
No 10
>2i3t_B Spindle assembly checkpoint component; WD40 protein, beta propeller, mitotic spindle checkpoint, cell cycle; 2.80A {Saccharomyces cerevisiae}
Probab=13.46 E-value=46 Score=20.89 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=8.7
Q ss_pred cchhhhhhhhhc------cchhH
Q 036056 86 GMEYGVEKVRGT------KDWKN 102 (146)
Q Consensus 86 g~ec~ie~~Rgk------~D~~N 102 (146)
+.|.++|.+|.. .||.|
T Consensus 24 ~~E~sfeEllA~sRg~~~~~w~~ 46 (54)
T 2i3t_B 24 RLEFSLEEVLAISRNVYKRVRTN 46 (54)
T ss_dssp -CBCCHHHHHHHTTTCSSCC---
T ss_pred cceeeHHHHHHHhcCcccccccc
Confidence 457777777653 67776
Done!