BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036058
(80 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone
Deacetylases By Myocyte Enhancer Factor-2
pdb|1TQE|Q Chain Q, Mechanism Of Recruitment Of Class Ii Histone
Deacetylases By Myocyte Enhancer Factor-2
pdb|1TQE|R Chain R, Mechanism Of Recruitment Of Class Ii Histone
Deacetylases By Myocyte Enhancer Factor-2
pdb|1TQE|S Chain S, Mechanism Of Recruitment Of Class Ii Histone
Deacetylases By Myocyte Enhancer Factor-2
Length = 93
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 1 MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK 60
MGR ++QI +I ++ R +TF KRK GL+KKAYE+S LCD E+ALIIF+ A +L +
Sbjct: 1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQY-AS 59
Query: 61 KRLDEILMHFIDL--PHHQRA 79
+D +L+ + + PH R
Sbjct: 60 TDMDRVLLKYTEYSEPHESRT 80
>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely
Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND
RECRUITS Transcription Co-Factors
pdb|3KOV|B Chain B, Structure Of Mef2a Bound To Dna Reveals A Completely
Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND
RECRUITS Transcription Co-Factors
pdb|3KOV|I Chain I, Structure Of Mef2a Bound To Dna Reveals A Completely
Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND
RECRUITS Transcription Co-Factors
pdb|3KOV|J Chain J, Structure Of Mef2a Bound To Dna Reveals A Completely
Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND
RECRUITS Transcription Co-Factors
pdb|3P57|A Chain A, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
pdb|3P57|B Chain B, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
pdb|3P57|C Chain C, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
pdb|3P57|D Chain D, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
pdb|3P57|I Chain I, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
pdb|3P57|J Chain J, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
Length = 90
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 2 GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKK 61
GR ++QI +I + R +TF KRK GL+KKAYE+S LCD E+ALIIF+ + KL +
Sbjct: 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-AST 59
Query: 62 RLDEILMHFIDL--PHHQRA 79
+D++L+ + + PH R
Sbjct: 60 DMDKVLLKYTEYNEPHESRT 79
>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of
Histone Deacetylases By Myocyte Enhancer Factor-2
pdb|1N6J|B Chain B, Structural Basis Of Sequence-Specific Recruitment Of
Histone Deacetylases By Myocyte Enhancer Factor-2
Length = 93
Score = 72.0 bits (175), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 2 GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKK 61
GR ++QI +I ++ R +TF KRK GL+KKAYE+S LCD E+ALIIF+ A +L +
Sbjct: 1 GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQY-AST 59
Query: 62 RLDEILMHFIDL--PHHQRA 79
+D +L+ + + PH R
Sbjct: 60 DMDRVLLKYTEYSEPHESRT 79
>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna
pdb|1EGW|B Chain B, Crystal Structure Of Mef2a Core Bound To Dna
pdb|1EGW|C Chain C, Crystal Structure Of Mef2a Core Bound To Dna
pdb|1EGW|D Chain D, Crystal Structure Of Mef2a Core Bound To Dna
Length = 77
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 2 GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKK 61
GR ++QI +I + R +TF KRK GL+KKAYE+S LCD E+ALIIF+ + KL +
Sbjct: 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-AST 59
Query: 62 RLDEILMHFIDL--PHH 76
+D++L+ + + PH
Sbjct: 60 DMDKVLLKYTEYNEPHE 76
>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The
Transcription Factor Mef2a With A 20mer Oligonucleotide
pdb|1C7U|B Chain B, Complex Of The Dna Binding Core Domain Of The
Transcription Factor Mef2a With A 20mer Oligonucleotide
Length = 85
Score = 69.3 bits (168), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 2 GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKK 61
GR ++QI +I + R +TF KRK GL+KKAYE+S L D E+ALIIF+ + KL +
Sbjct: 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQY-AST 59
Query: 62 RLDEILMHFIDL--PHHQRA 79
+D++L+ + + PH R
Sbjct: 60 DMDKVLLKYTEYNEPHESRT 79
>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases
To Myocyte Enhancer Factor-2 By Small Molecules
pdb|3MU6|B Chain B, Inhibiting The Binding Of Class Iia Histone Deacetylases
To Myocyte Enhancer Factor-2 By Small Molecules
pdb|3MU6|C Chain C, Inhibiting The Binding Of Class Iia Histone Deacetylases
To Myocyte Enhancer Factor-2 By Small Molecules
pdb|3MU6|D Chain D, Inhibiting The Binding Of Class Iia Histone Deacetylases
To Myocyte Enhancer Factor-2 By Small Molecules
Length = 71
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Query: 2 GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKK 61
GR ++QI +I + R +TF KRK GL+KKAYE+S LCD E+ALIIF+ + KL +
Sbjct: 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-AST 59
Query: 62 RLDEILMHF 70
+D++L+ +
Sbjct: 60 DMDKVLLKY 68
>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX
Crystal Structure
pdb|1MNM|B Chain B, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX
Crystal Structure
Length = 100
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%)
Query: 3 RVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKK 61
R +++IK IEN+T RH+TF+KRK G++KKA+E+S L +V L++ S G + F K
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK 76
>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific
Sre Dna
pdb|1SRS|B Chain B, Serum Response Factor (Srf) Core Complexed With Specific
Sre Dna
pdb|1HBX|A Chain A, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
pdb|1HBX|B Chain B, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
pdb|1HBX|D Chain D, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
pdb|1HBX|E Chain E, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
Length = 92
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 44/60 (73%)
Query: 2 GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKK 61
GRV+++++ I+N+ R+ TF+KRK+G++KKAYE+STL +V L++ S G + F +K
Sbjct: 11 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK 70
>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna
Complex
pdb|1K6O|C Chain C, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna
Complex
Length = 103
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 44/60 (73%)
Query: 2 GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKK 61
GRV+++++ I+N+ R+ TF+KRK+G++KKAYE+STL +V L++ S G + F +K
Sbjct: 10 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK 69
>pdb|3DRF|A Chain A, Lactococcal Oppa Complexed With An Endogenous Peptide In
The Closed Conformation
pdb|3DRG|A Chain A, Lactococcal Oppa Complexed With Bradykinin In The Closed
Conformation
pdb|3DRH|A Chain A, Crystal Structure Of Lactococcal Oppa Co-Crystallized With
Leu- Enkephalin In An Open Conformation
pdb|3DRI|A Chain A, Crystal Structure Of Lactococcal Oppa Co-Crystallized With
An Octamer Peptide In An Open Conformation
pdb|3DRJ|A Chain A, Crystal Structure Of Lactococcal Oppa Co-Crystallized With
Pth-Related Peptide In An Open Conformation
pdb|3DRK|A Chain A, Crystal Structure Of Lactococcal Oppa Co-Crystallized With
Neuropeptide S In An Open Conformation
pdb|3RYA|A Chain A, Lactococcal Oppa Complexed With Slsqlssqs
pdb|3RYB|A Chain A, Lactococcal Oppa Complexed With Slsqslsqs
Length = 590
Score = 28.9 bits (63), Expect = 0.80, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 10 KIENRTYRHITFAKRKSGLVKKAYEIST 37
K EN TYR F K + + KKAY I T
Sbjct: 512 KSENPTYRKAAFVKYQEDMNKKAYVIPT 539
>pdb|2BAP|B Chain B, Crystal Structure Of The N-Terminal Mdia1 Armadillo Repeat
Region And Dimerisation Domain In Complex With The Mdia1
Autoregulatory Domain (Dad)
pdb|2BAP|A Chain A, Crystal Structure Of The N-Terminal Mdia1 Armadillo Repeat
Region And Dimerisation Domain In Complex With The Mdia1
Autoregulatory Domain (Dad)
Length = 317
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 40 DVEVALIIFSPAGKLILFDGKKRLDEILMHFIDL 73
D++V L +F G FD K RLD+I M D
Sbjct: 214 DMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDF 247
>pdb|3O4X|A Chain A, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|B Chain B, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|C Chain C, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|D Chain D, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
Length = 330
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 40 DVEVALIIFSPAGKLILFDGKKRLDEILMHFIDL 73
D++V L +F G FD K RLD+I M D
Sbjct: 220 DMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDF 253
>pdb|1Z2C|B Chain B, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|D Chain D, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 383
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 40 DVEVALIIFSPAGKLILFDGKKRLDEILMHFIDL 73
D++V L +F G FD K RLD+I M D
Sbjct: 280 DMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDF 313
>pdb|3OBV|A Chain A, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|B Chain B, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|C Chain C, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|D Chain D, Autoinhibited Formin Mdia1 Structure
Length = 327
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 40 DVEVALIIFSPAGKLILFDGKKRLDEILMHFIDL 73
D++V L +F G FD K RLD+I M D
Sbjct: 218 DMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDF 251
>pdb|3FTO|A Chain A, Crystal Structure Of Oppa In A Open Conformation
Length = 590
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 10 KIENRTYRHITFAKRKSGLVKKAYEIST 37
K EN TYR F K + KKAY I T
Sbjct: 512 KSENPTYRKAAFVKYQEDXNKKAYVIPT 539
>pdb|3EG5|B Chain B, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|D Chain D, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 383
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 40 DVEVALIIFSPAGKLILFDGKKRLDEILMHFIDL 73
D++V L +F G FD K RLD+I M D
Sbjct: 280 DMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDF 313
>pdb|2BNX|A Chain A, Crystal Structure Of The Dimeric Regulatory Domain Of
Mouse Diaphaneous-Related Formin (Drf), Mdia1
pdb|2BNX|B Chain B, Crystal Structure Of The Dimeric Regulatory Domain Of
Mouse Diaphaneous-Related Formin (Drf), Mdia1
Length = 386
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 40 DVEVALIIFSPAGKLILFDGKKRLDEILMHFIDL 73
D++V L +F G FD K RLD+I M D
Sbjct: 218 DMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDF 251
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.143 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,224,349
Number of Sequences: 62578
Number of extensions: 69853
Number of successful extensions: 190
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 173
Number of HSP's gapped (non-prelim): 18
length of query: 80
length of database: 14,973,337
effective HSP length: 49
effective length of query: 31
effective length of database: 11,907,015
effective search space: 369117465
effective search space used: 369117465
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)