Query 036058
Match_columns 80
No_of_seqs 112 out of 1034
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 08:59:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036058.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036058hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0014 MADS box transcription 100.0 1.4E-33 3E-38 192.1 4.7 77 1-77 1-78 (195)
2 cd00265 MADS_MEF2_like MEF2 (m 100.0 4E-33 8.7E-38 169.9 4.8 74 2-76 1-74 (77)
3 cd00266 MADS_SRF_like SRF-like 100.0 2.4E-32 5.2E-37 168.4 5.2 78 2-79 1-78 (83)
4 smart00432 MADS MADS domain. 100.0 1.7E-29 3.7E-34 147.6 4.8 58 2-59 1-58 (59)
5 cd00120 MADS MADS: MCM1, Agamo 100.0 3.5E-29 7.6E-34 146.2 3.7 58 2-59 1-58 (59)
6 PF00319 SRF-TF: SRF-type tran 99.9 6.1E-28 1.3E-32 137.5 1.1 51 9-59 1-51 (51)
7 KOG0015 Regulator of arginine 99.8 1.1E-20 2.3E-25 139.1 5.1 76 2-77 63-146 (338)
8 COG5068 ARG80 Regulator of arg 99.5 6.2E-15 1.4E-19 111.9 3.3 60 1-60 81-140 (412)
9 PF09151 DUF1936: Domain of un 87.5 1 2.2E-05 23.3 2.9 28 35-62 3-31 (36)
10 PF10491 Nrf1_DNA-bind: NLS-bi 64.8 13 0.00027 26.8 3.9 45 26-71 35-86 (214)
11 PF14009 DUF4228: Domain of un 64.2 15 0.00033 23.7 4.0 33 39-71 12-44 (181)
12 PF09941 DUF2173: Uncharacteri 63.3 15 0.00032 23.7 3.7 29 31-60 2-30 (108)
13 cd01668 TGS_RelA_SpoT TGS_RelA 57.0 20 0.00044 19.0 3.2 25 46-70 2-26 (60)
14 KOG4637 Adaptor for phosphoino 54.1 6.9 0.00015 30.7 1.1 45 33-77 367-415 (464)
15 PF10623 PilI: Plasmid conjuga 51.4 32 0.00069 21.2 3.6 31 42-72 8-40 (83)
16 PF02824 TGS: TGS domain; Int 50.6 34 0.00075 19.1 3.5 25 45-69 1-25 (60)
17 TIGR01916 F420_cofE F420-0:gam 50.1 14 0.0003 27.0 2.1 23 34-56 134-156 (243)
18 PRK09555 feoA ferrous iron tra 48.3 34 0.00073 20.2 3.3 32 26-57 20-51 (74)
19 COG5000 NtrY Signal transducti 44.8 26 0.00057 29.2 3.1 22 36-57 374-395 (712)
20 COG5242 TFB4 RNA polymerase II 42.7 38 0.00082 25.1 3.4 28 35-62 58-85 (296)
21 cd01365 KISc_KIF1A_KIF1B Kines 40.5 32 0.0007 25.5 2.9 26 36-61 83-110 (356)
22 PRK13293 F420-0--gamma-glutamy 39.7 24 0.00053 25.7 2.1 24 34-57 135-158 (245)
23 COG3411 Ferredoxin [Energy pro 39.7 30 0.00065 20.4 2.1 28 44-71 18-45 (64)
24 PF12134 PRP8_domainIV: PRP8 d 38.4 38 0.00081 24.7 2.8 38 42-79 45-99 (231)
25 cd01372 KISc_KIF4 Kinesin moto 38.4 55 0.0012 24.0 3.8 25 36-60 68-94 (341)
26 cd00565 ThiS ThiaminS ubiquiti 38.3 40 0.00087 18.8 2.5 21 51-71 5-25 (65)
27 cd06397 PB1_UP1 Uncharacterize 38.1 90 0.0019 19.3 4.1 45 26-70 23-67 (82)
28 PF00383 dCMP_cyt_deam_1: Cyti 37.4 66 0.0014 19.0 3.5 27 28-54 7-37 (102)
29 TIGR01683 thiS thiamine biosyn 36.1 45 0.00097 18.6 2.4 21 51-71 4-24 (64)
30 PF11885 DUF3405: Protein of u 35.7 32 0.0007 27.6 2.3 42 28-69 124-167 (496)
31 cd01371 KISc_KIF3 Kinesin moto 35.4 44 0.00096 24.5 2.9 26 36-61 76-103 (333)
32 cd03064 TRX_Fd_NuoE TRX-like [ 34.8 33 0.00072 19.8 1.8 29 39-70 52-80 (80)
33 cd00106 KISc Kinesin motor dom 34.6 47 0.001 24.0 2.9 25 36-60 73-99 (328)
34 cd01370 KISc_KIP3_like Kinesin 34.5 43 0.00093 24.8 2.7 25 36-60 82-108 (338)
35 cd03063 TRX_Fd_FDH_beta TRX-li 34.1 62 0.0013 20.0 3.0 35 38-72 44-79 (92)
36 cd01368 KISc_KIF23_like Kinesi 33.9 48 0.001 24.6 2.9 26 36-61 83-110 (345)
37 cd01376 KISc_KID_like Kinesin 33.4 55 0.0012 23.9 3.1 25 36-60 75-101 (319)
38 cd01616 TGS The TGS domain, na 33.1 71 0.0015 16.0 3.3 25 47-71 3-27 (60)
39 PF10584 Proteasome_A_N: Prote 32.9 11 0.00024 17.9 -0.4 11 45-55 5-15 (23)
40 cd01369 KISc_KHC_KIF5 Kinesin 32.9 45 0.00098 24.3 2.6 26 36-61 71-98 (325)
41 COG5179 TAF1 Transcription ini 32.6 58 0.0013 27.6 3.3 44 26-71 446-489 (968)
42 cd03062 TRX_Fd_Sucrase TRX-lik 32.5 36 0.00077 20.8 1.7 27 45-71 55-83 (97)
43 PRK05863 sulfur carrier protei 32.4 55 0.0012 18.4 2.4 20 51-70 6-25 (65)
44 PF11976 Rad60-SLD: Ubiquitin- 32.3 88 0.0019 17.3 3.3 32 44-75 2-38 (72)
45 COG4831 Roadblock/LC7 domain [ 32.3 67 0.0015 20.6 3.0 30 30-60 3-32 (109)
46 COG4043 Preprotein translocase 32.3 29 0.00063 22.5 1.3 25 56-80 72-96 (111)
47 cd02980 TRX_Fd_family Thioredo 32.2 50 0.0011 18.5 2.3 30 39-69 47-76 (77)
48 COG1918 FeoA Fe2+ transport sy 32.1 81 0.0017 18.8 3.2 32 26-57 21-52 (75)
49 cd00173 SH2 Src homology 2 dom 31.9 1E+02 0.0023 17.6 4.0 44 31-74 34-81 (94)
50 PRK13294 F420-0--gamma-glutamy 31.8 37 0.0008 26.6 2.1 22 34-55 135-156 (448)
51 smart00252 SH2 Src homology 2 31.7 1E+02 0.0022 17.5 3.5 41 33-74 37-82 (84)
52 COG4917 EutP Ethanolamine util 31.5 33 0.0007 23.3 1.5 25 34-58 58-82 (148)
53 PF13252 DUF4043: Protein of u 31.4 21 0.00046 27.0 0.7 28 31-58 270-299 (341)
54 cd01366 KISc_C_terminal Kinesi 30.9 49 0.0011 24.1 2.5 25 36-60 72-98 (329)
55 cd01363 Motor_domain Myosin an 30.5 37 0.00081 22.7 1.7 25 36-60 18-44 (186)
56 PF14263 DUF4354: Domain of un 30.0 19 0.00041 23.8 0.2 42 11-57 41-82 (124)
57 cd01284 Riboflavin_deaminase-r 29.8 82 0.0018 19.9 3.2 28 29-56 1-34 (115)
58 PF09695 YtfJ_HI0045: Bacteria 29.5 45 0.00098 22.9 2.0 34 21-57 107-140 (160)
59 cd01374 KISc_CENP_E Kinesin mo 29.3 53 0.0012 23.9 2.5 25 36-60 68-94 (321)
60 PF09432 THP2: Tho complex sub 29.2 62 0.0013 21.6 2.5 20 56-75 33-52 (132)
61 PRK05659 sulfur carrier protei 28.9 71 0.0015 17.6 2.5 20 51-70 6-25 (66)
62 cd02958 UAS UAS family; UAS is 27.5 1.5E+02 0.0032 17.9 4.3 38 33-70 66-107 (114)
63 PF09998 DUF2239: Uncharacteri 26.9 1.3E+02 0.0028 21.3 3.9 35 39-73 30-65 (187)
64 PF12860 PAS_7: PAS fold 26.8 74 0.0016 18.9 2.5 17 41-57 4-20 (115)
65 PF15119 APOC4: Apolipoprotein 26.3 32 0.00068 21.8 0.7 19 22-40 76-96 (99)
66 PF11232 Med25: Mediator compl 26.2 73 0.0016 21.7 2.5 24 37-60 109-134 (152)
67 smart00129 KISc Kinesin motor, 26.0 75 0.0016 23.1 2.7 24 37-60 75-100 (335)
68 PF04798 Baculo_19: Baculoviru 25.9 1.3E+02 0.0028 20.5 3.6 38 35-72 65-111 (146)
69 PF04945 YHS: YHS domain; Int 25.9 30 0.00065 18.2 0.5 23 39-61 6-31 (47)
70 PRK09732 hypothetical protein; 25.7 1.3E+02 0.0028 19.7 3.6 30 29-58 16-45 (134)
71 PRK08053 sulfur carrier protei 25.4 89 0.0019 17.5 2.5 20 51-70 6-25 (66)
72 cd01367 KISc_KIF2_like Kinesin 25.3 67 0.0015 23.5 2.4 25 36-60 79-105 (322)
73 PF00017 SH2: SH2 domain; Int 24.4 1.3E+02 0.0029 16.7 3.2 37 33-70 36-77 (77)
74 PF10662 PduV-EutP: Ethanolami 24.4 54 0.0012 21.9 1.6 25 35-59 58-82 (143)
75 cd01373 KISc_KLP2_like Kinesin 24.3 97 0.0021 22.9 3.1 25 36-60 69-95 (337)
76 PF09579 Spore_YtfJ: Sporulati 23.8 1.4E+02 0.0031 18.0 3.3 27 42-68 48-75 (83)
77 COG3644 Uncharacterized protei 23.5 1.6E+02 0.0035 20.6 3.8 37 35-71 27-64 (194)
78 COG5068 ARG80 Regulator of arg 23.4 44 0.00096 26.3 1.2 47 8-60 18-64 (412)
79 TIGR01126 pdi_dom protein disu 23.1 1.5E+02 0.0033 16.6 3.4 24 44-67 72-95 (102)
80 COG1240 ChlD Mg-chelatase subu 22.8 1.9E+02 0.0042 21.4 4.3 43 34-76 104-151 (261)
81 PF09158 MotCF: Bacteriophage 22.6 34 0.00073 22.0 0.3 24 5-28 19-43 (103)
82 PRK06944 sulfur carrier protei 22.6 1.1E+02 0.0023 16.8 2.4 21 51-71 6-26 (65)
83 KOG3134 Predicted membrane pro 22.4 40 0.00086 24.5 0.7 36 36-74 3-41 (225)
84 cd02995 PDI_a_PDI_a'_C PDIa fa 22.0 1.6E+02 0.0034 16.7 3.2 24 45-68 77-102 (104)
85 smart00782 PhnA_Zn_Ribbon PhnA 22.0 46 0.001 18.2 0.8 22 28-49 2-23 (47)
86 PRK07440 hypothetical protein; 22.0 1.1E+02 0.0024 17.6 2.5 21 50-70 9-29 (70)
87 KOG0854 Alkyl hydroperoxide re 21.6 1.6E+02 0.0034 21.2 3.5 28 43-70 132-164 (224)
88 cd01375 KISc_KIF9_like Kinesin 21.5 93 0.002 22.9 2.5 25 36-60 75-101 (334)
89 PF10114 PocR: Sensory domain 21.5 92 0.002 20.2 2.3 24 35-60 17-40 (173)
90 cd02961 PDI_a_family Protein D 21.4 1.3E+02 0.0028 16.5 2.7 25 44-68 74-99 (101)
91 PF07676 PD40: WD40-like Beta 20.7 77 0.0017 15.4 1.4 19 42-60 10-28 (39)
92 cd02993 PDI_a_APS_reductase PD 20.5 1.6E+02 0.0036 17.5 3.2 23 45-67 82-106 (109)
93 KOG4316 Uncharacterized conser 20.5 23 0.0005 24.4 -0.8 41 33-73 43-93 (172)
94 PF13082 DUF3931: Protein of u 20.4 28 0.00061 20.1 -0.3 37 4-40 6-44 (66)
95 COG4888 Uncharacterized Zn rib 20.4 74 0.0016 20.5 1.6 54 1-57 1-58 (104)
96 PHA02592 52 DNA topisomerase I 20.2 1.3E+02 0.0029 23.6 3.2 27 42-71 298-324 (439)
97 PF06574 FAD_syn: FAD syntheta 20.1 1.1E+02 0.0025 20.2 2.5 26 26-51 22-47 (157)
No 1
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=99.98 E-value=1.4e-33 Score=192.12 Aligned_cols=77 Identities=47% Similarity=0.856 Sum_probs=70.9
Q ss_pred CCccceeeEEecCCCcccchhccccchhhhhhhhhhhccCcceeEEEecCCCceEEecCC-CCHHHHHHHhcCCCccc
Q 036058 1 MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK-KRLDEILMHFIDLPHHQ 77 (80)
Q Consensus 1 MgR~ki~ik~I~~~~~R~~tf~KRk~gL~KKa~ELs~Lc~~~v~liv~~~~~~~~~~~s~-~~~~~il~~y~~~~~~~ 77 (80)
|||+||+|++|+|++.|++||+||+.||||||+||||||||+||+|||||+|++|.|+++ .++++++++|.+.++..
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 78 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPS 78 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999877554 34999999998766554
No 2
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.98 E-value=4e-33 Score=169.90 Aligned_cols=74 Identities=49% Similarity=0.807 Sum_probs=69.8
Q ss_pred CccceeeEEecCCCcccchhccccchhhhhhhhhhhccCcceeEEEecCCCceEEecCCCCHHHHHHHhcCCCcc
Q 036058 2 GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKKRLDEILMHFIDLPHH 76 (80)
Q Consensus 2 gR~ki~ik~I~~~~~R~~tf~KRk~gL~KKa~ELs~Lc~~~v~liv~~~~~~~~~~~s~~~~~~il~~y~~~~~~ 76 (80)
||+||+|++|+|+.+|++||+||+.||||||.|||+||||+||+|||+|+|+++.|++ +++++|+++|++.+..
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s-~s~~~vl~ry~~~~~~ 74 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSS-PSMEKIIERYQKTSGS 74 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecC-CCHHHHHHHHHhcccc
Confidence 8999999999999999999999999999999999999999999999999999999966 5689999999977654
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.97 E-value=2.4e-32 Score=168.42 Aligned_cols=78 Identities=45% Similarity=0.766 Sum_probs=72.0
Q ss_pred CccceeeEEecCCCcccchhccccchhhhhhhhhhhccCcceeEEEecCCCceEEecCCCCHHHHHHHhcCCCccccc
Q 036058 2 GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKKRLDEILMHFIDLPHHQRA 79 (80)
Q Consensus 2 gR~ki~ik~I~~~~~R~~tf~KRk~gL~KKa~ELs~Lc~~~v~liv~~~~~~~~~~~s~~~~~~il~~y~~~~~~~r~ 79 (80)
||+||+|++|+|+.+|++||+||+.||+|||+|||+||||+||+|||+|+|+++.|+++.++++++++|..+++.++.
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 78 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSALERK 78 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHhhhh
Confidence 899999999999999999999999999999999999999999999999999877775544499999999999887765
No 4
>smart00432 MADS MADS domain.
Probab=99.96 E-value=1.7e-29 Score=147.57 Aligned_cols=58 Identities=60% Similarity=1.000 Sum_probs=56.1
Q ss_pred CccceeeEEecCCCcccchhccccchhhhhhhhhhhccCcceeEEEecCCCceEEecC
Q 036058 2 GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDG 59 (80)
Q Consensus 2 gR~ki~ik~I~~~~~R~~tf~KRk~gL~KKa~ELs~Lc~~~v~liv~~~~~~~~~~~s 59 (80)
||+||+|++|+|++.|++||+||+.||+|||+|||+||||+||+|||+|+|++++|++
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~ 58 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFAS 58 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccC
Confidence 8999999999999999999999999999999999999999999999999999988854
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.95 E-value=3.5e-29 Score=146.21 Aligned_cols=58 Identities=59% Similarity=0.954 Sum_probs=56.3
Q ss_pred CccceeeEEecCCCcccchhccccchhhhhhhhhhhccCcceeEEEecCCCceEEecC
Q 036058 2 GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDG 59 (80)
Q Consensus 2 gR~ki~ik~I~~~~~R~~tf~KRk~gL~KKa~ELs~Lc~~~v~liv~~~~~~~~~~~s 59 (80)
||+||+|++|+|+..|++||+||+.||+|||+|||+|||++||+|||+|+|.+++|++
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~ 58 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWS 58 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccC
Confidence 8999999999999999999999999999999999999999999999999999998865
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.94 E-value=6.1e-28 Score=137.47 Aligned_cols=51 Identities=63% Similarity=0.994 Sum_probs=46.8
Q ss_pred EEecCCCcccchhccccchhhhhhhhhhhccCcceeEEEecCCCceEEecC
Q 036058 9 KKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDG 59 (80)
Q Consensus 9 k~I~~~~~R~~tf~KRk~gL~KKa~ELs~Lc~~~v~liv~~~~~~~~~~~s 59 (80)
++|+|+..|++||+||+.||+|||+|||+||||+||+|||+|+|++++|||
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 579999999999999999999999999999999999999999999999986
No 7
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.82 E-value=1.1e-20 Score=139.08 Aligned_cols=76 Identities=36% Similarity=0.625 Sum_probs=67.5
Q ss_pred CccceeeEEecCCCcccchhccccchhhhhhhhhhhccCcceeEEEecCCCceEEecCC--------CCHHHHHHHhcCC
Q 036058 2 GRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK--------KRLDEILMHFIDL 73 (80)
Q Consensus 2 gR~ki~ik~I~~~~~R~~tf~KRk~gL~KKa~ELs~Lc~~~v~liv~~~~~~~~~~~s~--------~~~~~il~~y~~~ 73 (80)
||+||+|+||+|+..|.+||+|||.||||||+|||+|+|.+|.|+|.+++|-+|+|..+ +.-+++|+..+|-
T Consensus 63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s~~Gk~lIq~cLn~ 142 (338)
T KOG0015|consen 63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITSDEGKALIQACLNA 142 (338)
T ss_pred ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccchhhHHHHHHHhcC
Confidence 79999999999999999999999999999999999999999999999999999999654 1236778888876
Q ss_pred Cccc
Q 036058 74 PHHQ 77 (80)
Q Consensus 74 ~~~~ 77 (80)
|+..
T Consensus 143 pd~~ 146 (338)
T KOG0015|consen 143 PDTP 146 (338)
T ss_pred CCCC
Confidence 6543
No 8
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.52 E-value=6.2e-15 Score=111.90 Aligned_cols=60 Identities=38% Similarity=0.575 Sum_probs=57.5
Q ss_pred CCccceeeEEecCCCcccchhccccchhhhhhhhhhhccCcceeEEEecCCCceEEecCC
Q 036058 1 MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK 60 (80)
Q Consensus 1 MgR~ki~ik~I~~~~~R~~tf~KRk~gL~KKa~ELs~Lc~~~v~liv~~~~~~~~~~~s~ 60 (80)
||+++|.|.+|+|+.+|.+||.||+.||+|||.||++|+|.+|.++|.+.+|..++|..+
T Consensus 81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp 140 (412)
T COG5068 81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTP 140 (412)
T ss_pred cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCC
Confidence 789999999999999999999999999999999999999999999999999999999543
No 9
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=87.53 E-value=1 Score=23.33 Aligned_cols=28 Identities=18% Similarity=0.412 Sum_probs=19.2
Q ss_pred hhhccCcceeEEEecCCCceEEe-cCCCC
Q 036058 35 ISTLCDVEVALIIFSPAGKLILF-DGKKR 62 (80)
Q Consensus 35 Ls~Lc~~~v~liv~~~~~~~~~~-~s~~~ 62 (80)
|+--||+-|.+.||+..|..-+| .|++.
T Consensus 3 lcpkcgvgvl~pvy~~kgeikvfrcsnpa 31 (36)
T PF09151_consen 3 LCPKCGVGVLEPVYNQKGEIKVFRCSNPA 31 (36)
T ss_dssp B-TTTSSSBEEEEE-TTS-EEEEEES-TT
T ss_pred cCCccCceEEEEeecCCCcEEEEEcCCCc
Confidence 56679999999999999976666 35554
No 10
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=64.79 E-value=13 Score=26.80 Aligned_cols=45 Identities=18% Similarity=0.367 Sum_probs=34.5
Q ss_pred chhhhh----hhhhhhccCcceeEEEecCCC---ceEEecCCCCHHHHHHHhc
Q 036058 26 SGLVKK----AYEISTLCDVEVALIIFSPAG---KLILFDGKKRLDEILMHFI 71 (80)
Q Consensus 26 ~gL~KK----a~ELs~Lc~~~v~liv~~~~~---~~~~~~s~~~~~~il~~y~ 71 (80)
.-|+.| ..|+++-+|-++.+++.+|+. ...+| +...++.|+..|.
T Consensus 35 ~rllrkl~~~~de~~trvGqqavvl~~~p~kp~~~f~vf-Ga~pL~~vv~~~~ 86 (214)
T PF10491_consen 35 TRLLRKLRQTIDEYTTRVGQQAVVLCCTPSKPNPVFKVF-GAAPLENVVRNLK 86 (214)
T ss_pred HHHHHHHHHHHHHHHHhhhceeEEEEecCCCCCCceeee-cchhHHHHHHHHH
Confidence 456666 468999999999999999963 34567 6556888888875
No 11
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=64.20 E-value=15 Score=23.70 Aligned_cols=33 Identities=15% Similarity=0.263 Sum_probs=25.3
Q ss_pred cCcceeEEEecCCCceEEecCCCCHHHHHHHhc
Q 036058 39 CDVEVALIIFSPAGKLILFDGKKRLDEILMHFI 71 (80)
Q Consensus 39 c~~~v~liv~~~~~~~~~~~s~~~~~~il~~y~ 71 (80)
++...++-|..++|+...|..+-.+.+|+..|-
T Consensus 12 ~~~~~~vkvv~~~G~v~~~~~pv~a~evm~~~P 44 (181)
T PF14009_consen 12 SSSAATVKVVHPDGKVEEFKRPVTAAEVMLENP 44 (181)
T ss_pred cCCCceEEEEcCCCcEEEeCCCcCHHHHHHHCC
Confidence 445556666668999999977778999998873
No 12
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=63.31 E-value=15 Score=23.73 Aligned_cols=29 Identities=38% Similarity=0.454 Sum_probs=23.1
Q ss_pred hhhhhhhccCcceeEEEecCCCceEEecCC
Q 036058 31 KAYEISTLCDVEVALIIFSPAGKLILFDGK 60 (80)
Q Consensus 31 Ka~ELs~Lc~~~v~liv~~~~~~~~~~~s~ 60 (80)
+..+|..|.|| +|...|+++|++..|-++
T Consensus 2 ~l~~Lm~lpGv-~AAg~Fs~~G~l~e~~G~ 30 (108)
T PF09941_consen 2 KLDKLMKLPGV-VAAGEFSDDGKLVEYKGE 30 (108)
T ss_pred cHHHhhcCCCe-EEEEEECCCCeEEeeecC
Confidence 34678888888 456789999999999774
No 13
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=56.98 E-value=20 Score=18.98 Aligned_cols=25 Identities=16% Similarity=0.405 Sum_probs=20.4
Q ss_pred EEecCCCceEEecCCCCHHHHHHHh
Q 036058 46 IIFSPAGKLILFDGKKRLDEILMHF 70 (80)
Q Consensus 46 iv~~~~~~~~~~~s~~~~~~il~~y 70 (80)
.||-|+|..+.++...++.+++...
T Consensus 2 ~~~~~~g~~~~~~~~~t~~~~~~~~ 26 (60)
T cd01668 2 YVFTPKGEIIELPAGATVLDFAYAI 26 (60)
T ss_pred EEECCCCCEEEcCCCCCHHHHHHHH
Confidence 5788899999998888888887653
No 14
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=54.13 E-value=6.9 Score=30.72 Aligned_cols=45 Identities=27% Similarity=0.317 Sum_probs=30.7
Q ss_pred hhhhhccCcce--eEEEecCCCceEEecC--CCCHHHHHHHhcCCCccc
Q 036058 33 YEISTLCDVEV--ALIIFSPAGKLILFDG--KKRLDEILMHFIDLPHHQ 77 (80)
Q Consensus 33 ~ELs~Lc~~~v--~liv~~~~~~~~~~~s--~~~~~~il~~y~~~~~~~ 77 (80)
+-|||+||-+| |||--..+|=-|.-|- ..++++++.+|.+-+-++
T Consensus 367 yalSV~~~~~V~HClIy~tatG~GFa~pyn~y~tlk~lV~hY~h~SLe~ 415 (464)
T KOG4637|consen 367 YALSVVHDGEVKHCLIYQTATGFGFAEPYNLYSTLKELVLHYQHTSLEQ 415 (464)
T ss_pred eEEEEEECCceeeeEEeeccccccccchhHHHHHHHHHHHHHhhhhHHh
Confidence 56999999988 6666666663332222 157899999998766543
No 15
>PF10623 PilI: Plasmid conjugative transfer protein PilI; InterPro: IPR018897 The thin pilus of plasmid R64 belongs to the type IV family and is required for liquid matings. PilI is one of 14 genes that have been identified as being involved in biogenesis of the R64 thin pilus [].
Probab=51.42 E-value=32 Score=21.24 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=23.2
Q ss_pred ceeEEEecCCC--ceEEecCCCCHHHHHHHhcC
Q 036058 42 EVALIIFSPAG--KLILFDGKKRLDEILMHFID 72 (80)
Q Consensus 42 ~v~liv~~~~~--~~~~~~s~~~~~~il~~y~~ 72 (80)
.+-++|++.++ +++.++.+...+.++.+|..
T Consensus 8 rl~VLVv~n~c~~kL~~~~~~~D~~~i~r~f~T 40 (83)
T PF10623_consen 8 RLQVLVVSNHCERKLFDTKPDNDPDKIARRFCT 40 (83)
T ss_pred eEEEEEEeCCcceeEeecCCCCCHHHHHhhccC
Confidence 45678888876 57777666678999999864
No 16
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=50.65 E-value=34 Score=19.06 Aligned_cols=25 Identities=8% Similarity=0.264 Sum_probs=19.8
Q ss_pred EEEecCCCceEEecCCCCHHHHHHH
Q 036058 45 LIIFSPAGKLILFDGKKRLDEILMH 69 (80)
Q Consensus 45 liv~~~~~~~~~~~s~~~~~~il~~ 69 (80)
+.||-|+|....+|...++.++...
T Consensus 1 I~v~lpdG~~~~~~~g~T~~d~A~~ 25 (60)
T PF02824_consen 1 IRVYLPDGSIKELPEGSTVLDVAYS 25 (60)
T ss_dssp EEEEETTSCEEEEETTBBHHHHHHH
T ss_pred CEEECCCCCeeeCCCCCCHHHHHHH
Confidence 3567799999999988778777654
No 17
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=50.12 E-value=14 Score=26.99 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=19.5
Q ss_pred hhhhccCcceeEEEecCCCceEE
Q 036058 34 EISTLCDVEVALIIFSPAGKLIL 56 (80)
Q Consensus 34 ELs~Lc~~~v~liv~~~~~~~~~ 56 (80)
+|.-.+|++|++||+++.|.|+-
T Consensus 134 ~l~~~~g~~v~VIItDt~gr~~R 156 (243)
T TIGR01916 134 GLRELTGVDVGVIITDTNGRPFR 156 (243)
T ss_pred HHHHHHCCCEEEEEECCCCCccc
Confidence 46778999999999999987754
No 18
>PRK09555 feoA ferrous iron transport protein A; Reviewed
Probab=48.33 E-value=34 Score=20.17 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=28.3
Q ss_pred chhhhhhhhhhhccCcceeEEEecCCCceEEe
Q 036058 26 SGLVKKAYEISTLCDVEVALIIFSPAGKLILF 57 (80)
Q Consensus 26 ~gL~KKa~ELs~Lc~~~v~liv~~~~~~~~~~ 57 (80)
..+..+-.++-++.|++|-++-..|.|.|..+
T Consensus 20 ~~~~~rL~~mGl~pG~~V~v~~~aP~gdPi~i 51 (74)
T PRK09555 20 PAYRQKLLSLGMLPGSSFNVVRVAPLGDPIHI 51 (74)
T ss_pred hHHHHHHHHcCCCCCCEEEEEEECCCCCCEEE
Confidence 45788999999999999999999998887765
No 19
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=44.83 E-value=26 Score=29.23 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=20.6
Q ss_pred hhccCcceeEEEecCCCceEEe
Q 036058 36 STLCDVEVALIIFSPAGKLILF 57 (80)
Q Consensus 36 s~Lc~~~v~liv~~~~~~~~~~ 57 (80)
++|.|+.++||.++++|..+++
T Consensus 374 ~VLsgvtaGVi~~d~~g~i~t~ 395 (712)
T COG5000 374 AVLSGLTAGVIGFDNRGCITTV 395 (712)
T ss_pred HHHhcCceeEEEEcCCCeeEee
Confidence 6999999999999999998887
No 20
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=42.68 E-value=38 Score=25.12 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=21.4
Q ss_pred hhhccCcceeEEEecCCCceEEecCCCC
Q 036058 35 ISTLCDVEVALIIFSPAGKLILFDGKKR 62 (80)
Q Consensus 35 Ls~Lc~~~v~liv~~~~~~~~~~~s~~~ 62 (80)
|+.--+..||+|.-..+|.-|.||+..+
T Consensus 58 laf~~~NrVaVva~~s~~~~yLypss~s 85 (296)
T COG5242 58 LAFSRNNRVAVVAGYSQGKTYLYPSSES 85 (296)
T ss_pred HhhccCCeEEEEEeccCceEEeccCcch
Confidence 3444566788888888899999998755
No 21
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=40.53 E-value=32 Score=25.53 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=21.1
Q ss_pred hhccCcceeEEEecCC--CceEEecCCC
Q 036058 36 STLCDVEVALIIFSPA--GKLILFDGKK 61 (80)
Q Consensus 36 s~Lc~~~v~liv~~~~--~~~~~~~s~~ 61 (80)
+++-|..++++.|+++ ||-|+.-+++
T Consensus 83 ~~l~G~n~~i~ayGqtGSGKT~Tm~G~~ 110 (356)
T cd01365 83 HAFEGYNVCLFAYGQTGSGKSYTMMGYK 110 (356)
T ss_pred HHhCCCceEEEEecCCCCCCeEEecCCC
Confidence 4789999999999996 5888775653
No 22
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=39.70 E-value=24 Score=25.73 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=19.9
Q ss_pred hhhhccCcceeEEEecCCCceEEe
Q 036058 34 EISTLCDVEVALIIFSPAGKLILF 57 (80)
Q Consensus 34 ELs~Lc~~~v~liv~~~~~~~~~~ 57 (80)
+|.-.+|++|++||.+..|.|+-.
T Consensus 135 ~l~~~~g~~v~VIItDt~gr~~R~ 158 (245)
T PRK13293 135 GLEELTGKKVGVIITDTNGRPFRK 158 (245)
T ss_pred HHHHHHCCCEEEEEEcCCCccccc
Confidence 466779999999999999877644
No 23
>COG3411 Ferredoxin [Energy production and conversion]
Probab=39.66 E-value=30 Score=20.41 Aligned_cols=28 Identities=11% Similarity=0.198 Sum_probs=21.5
Q ss_pred eEEEecCCCceEEecCCCCHHHHHHHhc
Q 036058 44 ALIIFSPAGKLILFDGKKRLDEILMHFI 71 (80)
Q Consensus 44 ~liv~~~~~~~~~~~s~~~~~~il~~y~ 71 (80)
.++++.|+|-+|..-.++.++.|++.-+
T Consensus 18 Pvl~vYpegvWY~~V~p~~a~rIv~~hl 45 (64)
T COG3411 18 PVLVVYPEGVWYTRVDPEDARRIVQSHL 45 (64)
T ss_pred CEEEEecCCeeEeccCHHHHHHHHHHHH
Confidence 4677778888888777778899988754
No 24
>PF12134 PRP8_domainIV: PRP8 domain IV core; InterPro: IPR021983 This domain is found in eukaryotes, and is about 20 amino acids in length. It is found associated with PF10597 from PFAM, PF10596 from PFAM, PF10598 from PFAM, PF08083 from PFAM, PF08082 from PFAM, PF01398 from PFAM, PF08084 from PFAM. There is a conserved LILR sequence motif. The domain is a selenomethionine domain in a subunit of the spliceosome. The function of PRP8 domain IV is believed to be interaction with the splicosomal core. ; PDB: 3E66_A 3E9P_A 3SBT_A 3E9O_A 3SBG_A 3LRU_A 3E9L_A 3ENB_A.
Probab=38.42 E-value=38 Score=24.68 Aligned_cols=38 Identities=32% Similarity=0.682 Sum_probs=22.2
Q ss_pred ceeEEEecC-CCceE-------EecCCCC---------HHHHHHHhcCCCccccc
Q 036058 42 EVALIIFSP-AGKLI-------LFDGKKR---------LDEILMHFIDLPHHQRA 79 (80)
Q Consensus 42 ~v~liv~~~-~~~~~-------~~~s~~~---------~~~il~~y~~~~~~~r~ 79 (80)
.-|+.||+| +|++| +|.+... +++|+.=-.++|.++|-
T Consensus 45 NG~ifIfnP~TGqLflKiihtsvwaGQKRl~qlakwKtAEEv~alirslP~eEqP 99 (231)
T PF12134_consen 45 NGAIFIFNPRTGQLFLKIIHTSVWAGQKRLSQLAKWKTAEEVAALIRSLPKEEQP 99 (231)
T ss_dssp -EEEEEE-TTT-EEEEEEE-GGGGCC-SSHHHHHHHHHHHHHHHHHHHS-CCCSG
T ss_pred cceEEEEeCCCCcEEEEEEeehhccchhHHHHHHHHhhHHHHHHHHHhCCHhhCC
Confidence 448999999 68765 4776543 55665555677777763
No 25
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=38.38 E-value=55 Score=23.98 Aligned_cols=25 Identities=8% Similarity=0.203 Sum_probs=20.1
Q ss_pred hhccCcceeEEEecCC--CceEEecCC
Q 036058 36 STLCDVEVALIIFSPA--GKLILFDGK 60 (80)
Q Consensus 36 s~Lc~~~v~liv~~~~--~~~~~~~s~ 60 (80)
+++-|.+++++.|+++ ||.|+.-++
T Consensus 68 ~~~~G~n~~i~ayG~tgSGKT~Tm~G~ 94 (341)
T cd01372 68 GLFEGYNATVLAYGQTGSGKTYTMGTA 94 (341)
T ss_pred HHhCCCccceeeecCCCCCCcEEecCC
Confidence 5688999999999996 588887453
No 26
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=38.33 E-value=40 Score=18.82 Aligned_cols=21 Identities=19% Similarity=0.166 Sum_probs=17.6
Q ss_pred CCceEEecCCCCHHHHHHHhc
Q 036058 51 AGKLILFDGKKRLDEILMHFI 71 (80)
Q Consensus 51 ~~~~~~~~s~~~~~~il~~y~ 71 (80)
+|+.+.|+...++.++++.+.
T Consensus 5 Ng~~~~~~~~~tv~~ll~~l~ 25 (65)
T cd00565 5 NGEPREVEEGATLAELLEELG 25 (65)
T ss_pred CCeEEEcCCCCCHHHHHHHcC
Confidence 588999988888999998763
No 27
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=38.12 E-value=90 Score=19.27 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=33.8
Q ss_pred chhhhhhhhhhhccCcceeEEEecCCCceEEecCCCCHHHHHHHh
Q 036058 26 SGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKKRLDEILMHF 70 (80)
Q Consensus 26 ~gL~KKa~ELs~Lc~~~v~liv~~~~~~~~~~~s~~~~~~il~~y 70 (80)
.+|..|..+|--|.-..+++-=.+++|...+-.|+..++++....
T Consensus 23 ~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~ITlssd~eL~d~~~~~ 67 (82)
T cd06397 23 EALASKLENLYNLPEIKVGVTYIDNDNDEITLSSNKELQDFYRLS 67 (82)
T ss_pred HHHHHHHHHHhCCChhHeEEEEEcCCCCEEEecchHHHHHHHHhc
Confidence 578889999888887666666677778888887776666665543
No 28
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=37.44 E-value=66 Score=18.98 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=19.9
Q ss_pred hhhhhhhhhhcc----CcceeEEEecCCCce
Q 036058 28 LVKKAYEISTLC----DVEVALIIFSPAGKL 54 (80)
Q Consensus 28 L~KKa~ELs~Lc----~~~v~liv~~~~~~~ 54 (80)
+++.|.+++... +..|+.+|++++|+.
T Consensus 7 ~m~~a~~~a~~s~~~~~~~vgaviv~~~~~~ 37 (102)
T PF00383_consen 7 FMRIAIELAKRSRPCGNFPVGAVIVDPDGKI 37 (102)
T ss_dssp HHHHHHHHHHTHBTTTSSSEEEEEEETTTEE
T ss_pred HHHHHHHHHHhccccCCCCEEEEEEeccCcc
Confidence 566777766666 778988999976654
No 29
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=36.13 E-value=45 Score=18.59 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=17.6
Q ss_pred CCceEEecCCCCHHHHHHHhc
Q 036058 51 AGKLILFDGKKRLDEILMHFI 71 (80)
Q Consensus 51 ~~~~~~~~s~~~~~~il~~y~ 71 (80)
+|+.+.|+...++.++++.+.
T Consensus 4 Ng~~~~~~~~~tv~~ll~~l~ 24 (64)
T TIGR01683 4 NGEPVEVEDGLTLAALLESLG 24 (64)
T ss_pred CCeEEEcCCCCcHHHHHHHcC
Confidence 688999988878999998763
No 30
>PF11885 DUF3405: Protein of unknown function (DUF3405); InterPro: IPR021822 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 636 to 810 amino acids in length.
Probab=35.67 E-value=32 Score=27.63 Aligned_cols=42 Identities=17% Similarity=0.232 Sum_probs=29.6
Q ss_pred hhhhhhhhhhccCc--ceeEEEecCCCceEEecCCCCHHHHHHH
Q 036058 28 LVKKAYEISTLCDV--EVALIIFSPAGKLILFDGKKRLDEILMH 69 (80)
Q Consensus 28 L~KKa~ELs~Lc~~--~v~liv~~~~~~~~~~~s~~~~~~il~~ 69 (80)
|---..|||+.+|. +|.|+|--.++....|.+++.-+.+|+.
T Consensus 124 lRSLIsELSL~SGGEY~V~lLVhVKD~~~~Iwad~~~y~~~L~~ 167 (496)
T PF11885_consen 124 LRSLISELSLRSGGEYDVHLLVHVKDDDLPIWADDETYQRVLEE 167 (496)
T ss_pred HHHHHHHHhhhcCCceEEEEEEEecCCCCCccccHHHHHHHHHh
Confidence 44457899999995 6677776667767789765555666654
No 31
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=35.39 E-value=44 Score=24.55 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=21.1
Q ss_pred hhccCcceeEEEecCC--CceEEecCCC
Q 036058 36 STLCDVEVALIIFSPA--GKLILFDGKK 61 (80)
Q Consensus 36 s~Lc~~~v~liv~~~~--~~~~~~~s~~ 61 (80)
+++-|..++++.|+++ ||.|+.-+++
T Consensus 76 ~~~~G~n~~i~ayG~tgSGKTyTm~G~~ 103 (333)
T cd01371 76 SVLEGYNGTIFAYGQTGTGKTFTMEGVR 103 (333)
T ss_pred HHhCCCceeEEecCCCCCCCcEeecCCC
Confidence 6789999999999996 5888865643
No 32
>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes. It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu
Probab=34.77 E-value=33 Score=19.81 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=17.3
Q ss_pred cCcceeEEEecCCCceEEecCCCCHHHHHHHh
Q 036058 39 CDVEVALIIFSPAGKLILFDGKKRLDEILMHF 70 (80)
Q Consensus 39 c~~~v~liv~~~~~~~~~~~s~~~~~~il~~y 70 (80)
|+--..++| +|..|...+++.+.+|++.|
T Consensus 52 C~~gP~v~v---~g~~y~~vt~~~i~~i~~~~ 80 (80)
T cd03064 52 CDLAPVMMI---NDDVYGRLTPEKVDAILEAL 80 (80)
T ss_pred CCCCCEEEE---CCEEECCCCHHHHHHHHHhC
Confidence 544444444 26666665666788887754
No 33
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=34.58 E-value=47 Score=24.03 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=19.9
Q ss_pred hhccCcceeEEEecCC--CceEEecCC
Q 036058 36 STLCDVEVALIIFSPA--GKLILFDGK 60 (80)
Q Consensus 36 s~Lc~~~v~liv~~~~--~~~~~~~s~ 60 (80)
+++-|..+++++|+++ ||.|+.-++
T Consensus 73 ~~~~G~~~~i~~yG~tgSGKT~tl~G~ 99 (328)
T cd00106 73 SVLEGYNGTIFAYGQTGSGKTYTMFGS 99 (328)
T ss_pred HHhCCCceeEEEecCCCCCCeEEecCC
Confidence 3477999999999996 588876564
No 34
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=34.47 E-value=43 Score=24.78 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=20.3
Q ss_pred hhccCcceeEEEecCCC--ceEEecCC
Q 036058 36 STLCDVEVALIIFSPAG--KLILFDGK 60 (80)
Q Consensus 36 s~Lc~~~v~liv~~~~~--~~~~~~s~ 60 (80)
+++-|..+|++.|+++| |-|+.-++
T Consensus 82 ~~~~G~n~~i~ayGqtGSGKTyTm~G~ 108 (338)
T cd01370 82 GVLNGYNATVFAYGATGAGKTHTMLGT 108 (338)
T ss_pred HHHCCCCceEEeeCCCCCCCeEEEcCC
Confidence 56789999999999964 88886554
No 35
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=34.10 E-value=62 Score=19.99 Aligned_cols=35 Identities=11% Similarity=-0.077 Sum_probs=24.4
Q ss_pred ccCcceeEEEecCCC-ceEEecCCCCHHHHHHHhcC
Q 036058 38 LCDVEVALIIFSPAG-KLILFDGKKRLDEILMHFID 72 (80)
Q Consensus 38 Lc~~~v~liv~~~~~-~~~~~~s~~~~~~il~~y~~ 72 (80)
+|..+--+.|+.|.| -.|..-..+.+.+|++....
T Consensus 44 ~C~~ePlV~V~~p~g~v~Y~~V~~edv~~Iv~~~~~ 79 (92)
T cd03063 44 MYWLEPLVEVETPGGRVAYGPVTPADVASLLDAGAL 79 (92)
T ss_pred ecCCCCEEEEEeCCCcEEEEeCCHHHHHHHHHHHhh
Confidence 577777788887877 44444445678899988653
No 36
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=33.93 E-value=48 Score=24.60 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=21.1
Q ss_pred hhccCcceeEEEecCC--CceEEecCCC
Q 036058 36 STLCDVEVALIIFSPA--GKLILFDGKK 61 (80)
Q Consensus 36 s~Lc~~~v~liv~~~~--~~~~~~~s~~ 61 (80)
+++-|..+++++|+++ ||-|+.-+++
T Consensus 83 ~~l~G~n~ti~aYGqtGSGKTyTm~G~~ 110 (345)
T cd01368 83 DLLKGKNSLLFTYGVTNSGKTYTMQGSP 110 (345)
T ss_pred HHhCCCceEEEEeCCCCCCCeEEecCCC
Confidence 4678999999999996 4888876654
No 37
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=33.40 E-value=55 Score=23.92 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=20.2
Q ss_pred hhccCcceeEEEecCC--CceEEecCC
Q 036058 36 STLCDVEVALIIFSPA--GKLILFDGK 60 (80)
Q Consensus 36 s~Lc~~~v~liv~~~~--~~~~~~~s~ 60 (80)
+++-|..+++++|+++ ||-|+.-++
T Consensus 75 ~~~~G~n~~i~ayG~tgSGKTyTm~G~ 101 (319)
T cd01376 75 HLLSGQNATVFAYGSTGAGKTHTMLGD 101 (319)
T ss_pred HHhCCCceEEEEECCCCCCCcEEEeCC
Confidence 5677999999999996 488877554
No 38
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=33.14 E-value=71 Score=16.02 Aligned_cols=25 Identities=16% Similarity=0.329 Sum_probs=18.2
Q ss_pred EecCCCceEEecCCCCHHHHHHHhc
Q 036058 47 IFSPAGKLILFDGKKRLDEILMHFI 71 (80)
Q Consensus 47 v~~~~~~~~~~~s~~~~~~il~~y~ 71 (80)
++-++|..+.++...++.+++..+.
T Consensus 3 ~~~~~~~~~~~~~g~t~~~~~~~~~ 27 (60)
T cd01616 3 IFTPDGSAVELPKGATAMDFALKIH 27 (60)
T ss_pred EECCCCCEEEcCCCCCHHHHHHHHH
Confidence 3445688888988777888877653
No 39
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=32.89 E-value=11 Score=17.89 Aligned_cols=11 Identities=45% Similarity=0.981 Sum_probs=7.9
Q ss_pred EEEecCCCceE
Q 036058 45 LIIFSPAGKLI 55 (80)
Q Consensus 45 liv~~~~~~~~ 55 (80)
+.+|||+|+++
T Consensus 5 ~t~FSp~Grl~ 15 (23)
T PF10584_consen 5 ITTFSPDGRLF 15 (23)
T ss_dssp TTSBBTTSSBH
T ss_pred ceeECCCCeEE
Confidence 44788888764
No 40
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=32.86 E-value=45 Score=24.30 Aligned_cols=26 Identities=15% Similarity=0.322 Sum_probs=20.6
Q ss_pred hhccCcceeEEEecCC--CceEEecCCC
Q 036058 36 STLCDVEVALIIFSPA--GKLILFDGKK 61 (80)
Q Consensus 36 s~Lc~~~v~liv~~~~--~~~~~~~s~~ 61 (80)
+++-|..++++.|+++ ||.|+.-+++
T Consensus 71 ~~~~G~n~~i~ayG~tgSGKT~Tm~G~~ 98 (325)
T cd01369 71 DVLNGYNGTIFAYGQTGSGKTYTMEGPP 98 (325)
T ss_pred HHHcCccceEEEeCCCCCCceEEecCCC
Confidence 3688999999999996 5888865543
No 41
>COG5179 TAF1 Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=32.63 E-value=58 Score=27.61 Aligned_cols=44 Identities=14% Similarity=0.248 Sum_probs=36.4
Q ss_pred chhhhhhhhhhhccCcceeEEEecCCCceEEecCCCCHHHHHHHhc
Q 036058 26 SGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGKKRLDEILMHFI 71 (80)
Q Consensus 26 ~gL~KKa~ELs~Lc~~~v~liv~~~~~~~~~~~s~~~~~~il~~y~ 71 (80)
.+++++|.||++=--+++.|+=||+. .|+.. |++.+-+.|..|.
T Consensus 446 ~e~i~t~~elTvgDtsp~~L~EySEe-~P~~L-sn~GMas~l~nYY 489 (968)
T COG5179 446 QEIIKTAGELTVGDTSPFSLFEYSEE-EPFFL-SNPGMASLLNNYY 489 (968)
T ss_pred hhhhccccceeccCCCceeeeeeccc-Cceee-cCchHHHHHHHHH
Confidence 78999999999999999999999974 56655 6677777777764
No 42
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=32.51 E-value=36 Score=20.84 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=19.5
Q ss_pred EEEecC--CCceEEecCCCCHHHHHHHhc
Q 036058 45 LIIFSP--AGKLILFDGKKRLDEILMHFI 71 (80)
Q Consensus 45 liv~~~--~~~~~~~~s~~~~~~il~~y~ 71 (80)
.+++-| +|..|...+++.+++|++...
T Consensus 55 ~vvvyP~~~g~wy~~v~p~~v~~Iv~~hl 83 (97)
T cd03062 55 NVIIYPKGDGIWYGRVTPEHVPPIVDRLI 83 (97)
T ss_pred EEEEEeCCCeeEEeecCHHHHHHHHHHHh
Confidence 455556 677888777778999997654
No 43
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=32.37 E-value=55 Score=18.43 Aligned_cols=20 Identities=10% Similarity=0.190 Sum_probs=17.1
Q ss_pred CCceEEecCCCCHHHHHHHh
Q 036058 51 AGKLILFDGKKRLDEILMHF 70 (80)
Q Consensus 51 ~~~~~~~~s~~~~~~il~~y 70 (80)
||+++.++.+.++.++|+.+
T Consensus 6 NG~~~~~~~~~tl~~ll~~l 25 (65)
T PRK05863 6 NEEQVEVDEQTTVAALLDSL 25 (65)
T ss_pred CCEEEEcCCCCcHHHHHHHc
Confidence 68999998888899999874
No 44
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=32.31 E-value=88 Score=17.33 Aligned_cols=32 Identities=19% Similarity=0.405 Sum_probs=22.5
Q ss_pred eEEEecCCCceEEe--cCCCCHHHHHHHhc---CCCc
Q 036058 44 ALIIFSPAGKLILF--DGKKRLDEILMHFI---DLPH 75 (80)
Q Consensus 44 ~liv~~~~~~~~~~--~s~~~~~~il~~y~---~~~~ 75 (80)
.+.+.+.+|+.+.+ ..++.+..+++.|. +.|.
T Consensus 2 ~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~ 38 (72)
T PF11976_consen 2 TIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPP 38 (72)
T ss_dssp EEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCc
Confidence 46777888876555 34567999999995 5554
No 45
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=32.29 E-value=67 Score=20.64 Aligned_cols=30 Identities=37% Similarity=0.484 Sum_probs=23.9
Q ss_pred hhhhhhhhccCcceeEEEecCCCceEEecCC
Q 036058 30 KKAYEISTLCDVEVALIIFSPAGKLILFDGK 60 (80)
Q Consensus 30 KKa~ELs~Lc~~~v~liv~~~~~~~~~~~s~ 60 (80)
.|..||.-+-|+- |.=.|||+|++..|-++
T Consensus 3 ekLdeLlqi~Gv~-AAGefs~DGkLv~Ykgd 32 (109)
T COG4831 3 EKLDELLQIKGVM-AAGEFSPDGKLVEYKGD 32 (109)
T ss_pred hhHHHHhCcccee-EeceeCCCCceEEeeCC
Confidence 4678888888874 45679999999999775
No 46
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.28 E-value=29 Score=22.47 Aligned_cols=25 Identities=8% Similarity=0.187 Sum_probs=20.3
Q ss_pred EecCCCCHHHHHHHhcCCCcccccC
Q 036058 56 LFDGKKRLDEILMHFIDLPHHQRAA 80 (80)
Q Consensus 56 ~~~s~~~~~~il~~y~~~~~~~r~k 80 (80)
.+|..+|+++.|++|.+.=++.+++
T Consensus 72 v~p~~~S~ee~l~~~~~~Y~~~kE~ 96 (111)
T COG4043 72 VLPDVPSFEEGLRRYRNFYPSEKEK 96 (111)
T ss_pred hCCCCccHHHHHHHHHHhCcHhHhh
Confidence 5788899999999999877766653
No 47
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=32.23 E-value=50 Score=18.48 Aligned_cols=30 Identities=17% Similarity=0.408 Sum_probs=16.7
Q ss_pred cCcceeEEEecCCCceEEecCCCCHHHHHHH
Q 036058 39 CDVEVALIIFSPAGKLILFDGKKRLDEILMH 69 (80)
Q Consensus 39 c~~~v~liv~~~~~~~~~~~s~~~~~~il~~ 69 (80)
|+.--.++|+ |.+..|..-+++.+.+|++.
T Consensus 47 C~~~P~v~i~-~~~~~y~~v~~~~~~~il~~ 76 (77)
T cd02980 47 CGLAPVVVVY-PDGVWYGRVTPEDVEEIVEE 76 (77)
T ss_pred ccCCCEEEEe-CCCeEEccCCHHHHHHHHHh
Confidence 3333333443 55666665555667777765
No 48
>COG1918 FeoA Fe2+ transport system protein A [Inorganic ion transport and metabolism]
Probab=32.12 E-value=81 Score=18.79 Aligned_cols=32 Identities=19% Similarity=0.403 Sum_probs=28.2
Q ss_pred chhhhhhhhhhhccCcceeEEEecCCCceEEe
Q 036058 26 SGLVKKAYEISTLCDVEVALIIFSPAGKLILF 57 (80)
Q Consensus 26 ~gL~KKa~ELs~Lc~~~v~liv~~~~~~~~~~ 57 (80)
+++.+|-.++-+.-|+++.++-..|-|.|...
T Consensus 21 ~~~~~RL~~mG~~~G~~i~vi~~aplgdPi~v 52 (75)
T COG1918 21 NGLRRRLLSMGIVPGASITVVRKAPLGDPILV 52 (75)
T ss_pred HHHHHHHHHcCCCCCCEEEEEEecCCCCCEEE
Confidence 48999999999999999999999998876544
No 49
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=31.93 E-value=1e+02 Score=17.58 Aligned_cols=44 Identities=23% Similarity=0.287 Sum_probs=25.0
Q ss_pred hhhhhhhccCccee-EEEecCCCceEEec-C--CCCHHHHHHHhcCCC
Q 036058 31 KAYEISTLCDVEVA-LIIFSPAGKLILFD-G--KKRLDEILMHFIDLP 74 (80)
Q Consensus 31 Ka~ELs~Lc~~~v~-liv~~~~~~~~~~~-s--~~~~~~il~~y~~~~ 74 (80)
...-||+.++-.+. +.|...++..+... . -+++.++++.|...+
T Consensus 34 ~~~~Lsv~~~~~v~H~~I~~~~~~~~~~~~~~~f~sl~eLv~~y~~~~ 81 (94)
T cd00173 34 GDYVLSVRVKGKVKHYRIERTDDGYYLLGEGRSFPSLPELIEHYQKNP 81 (94)
T ss_pred CCEEEEEEECCEEEEEEEEECCCCeEEecCCCccCCHHHHHHHHhhCc
Confidence 34457777776652 23333333222221 2 278999999998655
No 50
>PRK13294 F420-0--gamma-glutamyl ligase; Provisional
Probab=31.85 E-value=37 Score=26.59 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.0
Q ss_pred hhhhccCcceeEEEecCCCceE
Q 036058 34 EISTLCDVEVALIIFSPAGKLI 55 (80)
Q Consensus 34 ELs~Lc~~~v~liv~~~~~~~~ 55 (80)
+|.-.+|++|+|||.+..|.|+
T Consensus 135 ~l~~~~g~~v~vii~Dt~gr~~ 156 (448)
T PRK13294 135 GLRERLGVDVAVVVTDTMGRAW 156 (448)
T ss_pred HHHHHHCCCEEEEEecCCCCcc
Confidence 4777899999999999988765
No 51
>smart00252 SH2 Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.
Probab=31.70 E-value=1e+02 Score=17.51 Aligned_cols=41 Identities=27% Similarity=0.333 Sum_probs=23.7
Q ss_pred hhhhhccCccee--EEEecCCCceEEecC---CCCHHHHHHHhcCCC
Q 036058 33 YEISTLCDVEVA--LIIFSPAGKLILFDG---KKRLDEILMHFIDLP 74 (80)
Q Consensus 33 ~ELs~Lc~~~v~--liv~~~~~~~~~~~s---~~~~~~il~~y~~~~ 74 (80)
.-||+.++..+- .|...++|. |.+.+ -+++.++|+.|...|
T Consensus 37 ~~Lsv~~~~~~~h~~I~~~~~~~-~~l~~~~~F~sl~eLI~~y~~~~ 82 (84)
T smart00252 37 YVLSVRVKGKVKHYRIRRNEDGK-FYLDGGRKFPSLVELVEHYQKNS 82 (84)
T ss_pred EEEEEEECCEEEEEEEEECCCCc-EEECCCCccCCHHHHHHHHhhCC
Confidence 456677666552 232333233 33333 278999999998655
No 52
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=31.52 E-value=33 Score=23.32 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=19.7
Q ss_pred hhhhccCcceeEEEecCCCceEEec
Q 036058 34 EISTLCDVEVALIIFSPAGKLILFD 58 (80)
Q Consensus 34 ELs~Lc~~~v~liv~~~~~~~~~~~ 58 (80)
=+.++||++|-+++.+-+++...||
T Consensus 58 L~tt~~dadvi~~v~~and~~s~f~ 82 (148)
T COG4917 58 LITTLQDADVIIYVHAANDPESRFP 82 (148)
T ss_pred HHHHhhccceeeeeecccCccccCC
Confidence 3678999999999998887655553
No 53
>PF13252 DUF4043: Protein of unknown function (DUF4043)
Probab=31.38 E-value=21 Score=27.03 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=21.7
Q ss_pred hhhhhhhccCcceeEEEecC--CCceEEec
Q 036058 31 KAYEISTLCDVEVALIIFSP--AGKLILFD 58 (80)
Q Consensus 31 Ka~ELs~Lc~~~v~liv~~~--~~~~~~~~ 58 (80)
.+-.-++|||++++++.|+. ++.++.|.
T Consensus 270 ~~v~ralLlGaQA~~~A~G~~~~~~~~~w~ 299 (341)
T PF13252_consen 270 VAVARALLLGAQALVIAFGKSGSGMRFFWV 299 (341)
T ss_pred cceeeeeeechhheeeeeeccCCCcccccc
Confidence 34456789999999999998 34677773
No 54
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=30.92 E-value=49 Score=24.13 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=20.3
Q ss_pred hhccCcceeEEEecCC--CceEEecCC
Q 036058 36 STLCDVEVALIIFSPA--GKLILFDGK 60 (80)
Q Consensus 36 s~Lc~~~v~liv~~~~--~~~~~~~s~ 60 (80)
+++-|..++++.|+++ ||.|+.-++
T Consensus 72 ~~~~G~~~~i~ayG~tgSGKT~tl~G~ 98 (329)
T cd01366 72 SALDGYNVCIFAYGQTGSGKTYTMEGP 98 (329)
T ss_pred HHhCCCceEEEEeCCCCCCCcEEecCC
Confidence 5678999999999996 588877554
No 55
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=30.45 E-value=37 Score=22.72 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=19.2
Q ss_pred hhccCcceeEEEecCC--CceEEecCC
Q 036058 36 STLCDVEVALIIFSPA--GKLILFDGK 60 (80)
Q Consensus 36 s~Lc~~~v~liv~~~~--~~~~~~~s~ 60 (80)
+++.|-++|+++|+++ ||-|+.-++
T Consensus 18 ~~~~G~n~~i~~yG~tGsGKT~Tm~G~ 44 (186)
T cd01363 18 SALDGYNVCIFAYGQTGSGKTYTMEGK 44 (186)
T ss_pred HHhCCcceeEEEECCCCCcceEecCCC
Confidence 4568899999999997 477766443
No 56
>PF14263 DUF4354: Domain of unknown function (DUF4354); PDB: 3NRF_B 3SB3_A.
Probab=30.04 E-value=19 Score=23.78 Aligned_cols=42 Identities=24% Similarity=0.511 Sum_probs=28.6
Q ss_pred ecCCCcccchhccccchhhhhhhhhhhccCcceeEEEecCCCceEEe
Q 036058 11 IENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILF 57 (80)
Q Consensus 11 I~~~~~R~~tf~KRk~gL~KKa~ELs~Lc~~~v~liv~~~~~~~~~~ 57 (80)
+.++.....||.=.-..+..+.-+|+.+| ++.|++.|+-+..
T Consensus 41 v~~k~~ytktF~V~vaN~s~~~idLsk~C-----f~a~~~~gk~f~l 82 (124)
T PF14263_consen 41 VGGKSFYTKTFDVTVANLSDKDIDLSKMC-----FKAYSPDGKEFKL 82 (124)
T ss_dssp ETTEEEEEEEEEEEEEE-SSS-EE-TT-E-----EEEEETTS-EEEE
T ss_pred ecCccceEEEEEEEEecCCCCccccccch-----hhhccccCCEEEe
Confidence 45566667777777788888888999885 9999999876654
No 57
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=29.83 E-value=82 Score=19.94 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=19.5
Q ss_pred hhhhhhhhhcc------CcceeEEEecCCCceEE
Q 036058 29 VKKAYEISTLC------DVEVALIIFSPAGKLIL 56 (80)
Q Consensus 29 ~KKa~ELs~Lc------~~~v~liv~~~~~~~~~ 56 (80)
++.|.|++-.+ +.+|+.++++++|+...
T Consensus 1 m~~al~~A~~~~~~~~~~~pvGaviv~~~g~iv~ 34 (115)
T cd01284 1 MRRALELAEKGRGLTSPNPPVGCVIVDDDGEIVG 34 (115)
T ss_pred CHHHHHHHHhcccccCCCCCEEEEEEeCCCeEEE
Confidence 35566777666 77897788887776544
No 58
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=29.50 E-value=45 Score=22.94 Aligned_cols=34 Identities=26% Similarity=0.593 Sum_probs=25.3
Q ss_pred hccccchhhhhhhhhhhccCcceeEEEecCCCceEEe
Q 036058 21 FAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILF 57 (80)
Q Consensus 21 f~KRk~gL~KKa~ELs~Lc~~~v~liv~~~~~~~~~~ 57 (80)
|--=.+|..++|+.|. +-.-++||.+.+|+...+
T Consensus 107 ~vlD~~G~~~~aW~L~---~~~SaiiVlDK~G~V~F~ 140 (160)
T PF09695_consen 107 FVLDSNGVVRKAWQLQ---EESSAIIVLDKQGKVQFV 140 (160)
T ss_pred EEEcCCCceeccccCC---CCCceEEEEcCCccEEEE
Confidence 4445688999999987 344578899999986544
No 59
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=29.33 E-value=53 Score=23.93 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=20.1
Q ss_pred hhccCcceeEEEecCC--CceEEecCC
Q 036058 36 STLCDVEVALIIFSPA--GKLILFDGK 60 (80)
Q Consensus 36 s~Lc~~~v~liv~~~~--~~~~~~~s~ 60 (80)
.++-|..++++.|+++ ||.|+.-++
T Consensus 68 ~~l~G~n~~i~ayG~tgSGKT~T~~G~ 94 (321)
T cd01374 68 SALEGYNGTIFAYGQTSSGKTFTMSGD 94 (321)
T ss_pred HHHCCCceeEEeecCCCCCCceeccCC
Confidence 3578999999999996 588887554
No 60
>PF09432 THP2: Tho complex subunit THP2; InterPro: IPR018557 The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1 [].
Probab=29.19 E-value=62 Score=21.65 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=15.5
Q ss_pred EecCCCCHHHHHHHhcCCCc
Q 036058 56 LFDGKKRLDEILMHFIDLPH 75 (80)
Q Consensus 56 ~~~s~~~~~~il~~y~~~~~ 75 (80)
.|+.+..+.+||+.|...++
T Consensus 33 ~~~pP~el~~iLe~y~~~~~ 52 (132)
T PF09432_consen 33 DWNPPKELQSILEKYNTPST 52 (132)
T ss_pred CCCCCHHHHHHHHHHcCCCc
Confidence 37777789999999987443
No 61
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=28.90 E-value=71 Score=17.64 Aligned_cols=20 Identities=10% Similarity=0.096 Sum_probs=16.9
Q ss_pred CCceEEecCCCCHHHHHHHh
Q 036058 51 AGKLILFDGKKRLDEILMHF 70 (80)
Q Consensus 51 ~~~~~~~~s~~~~~~il~~y 70 (80)
+|+++.++...++.++|+..
T Consensus 6 NG~~~~~~~~~tl~~lL~~l 25 (66)
T PRK05659 6 NGEPRELPDGESVAALLARE 25 (66)
T ss_pred CCeEEEcCCCCCHHHHHHhc
Confidence 68899998877899999875
No 62
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=27.47 E-value=1.5e+02 Score=17.88 Aligned_cols=38 Identities=18% Similarity=0.415 Sum_probs=23.5
Q ss_pred hhhhhccCcce--eEEEecC-CCc-eEEecCCCCHHHHHHHh
Q 036058 33 YEISTLCDVEV--ALIIFSP-AGK-LILFDGKKRLDEILMHF 70 (80)
Q Consensus 33 ~ELs~Lc~~~v--~liv~~~-~~~-~~~~~s~~~~~~il~~y 70 (80)
.+|+-.+++.- .+++++| +|+ ...+++..+.++++..-
T Consensus 66 ~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L 107 (114)
T cd02958 66 QRFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQL 107 (114)
T ss_pred HHHHHHhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHH
Confidence 34555555433 4667777 775 56778877777666543
No 63
>PF09998 DUF2239: Uncharacterized protein conserved in bacteria (DUF2239); InterPro: IPR018715 This family of uncharacterised bacterial proteins has no known function.
Probab=26.87 E-value=1.3e+02 Score=21.30 Aligned_cols=35 Identities=14% Similarity=0.291 Sum_probs=26.9
Q ss_pred cCcceeEEEecC-CCceEEecCCCCHHHHHHHhcCC
Q 036058 39 CDVEVALIIFSP-AGKLILFDGKKRLDEILMHFIDL 73 (80)
Q Consensus 39 c~~~v~liv~~~-~~~~~~~~s~~~~~~il~~y~~~ 73 (80)
-+....|+||+. +|.+..+--..+..+|+.+|...
T Consensus 30 ~~~~~~vLvFdd~TGr~vD~DlrG~~~ev~~R~~~~ 65 (187)
T PF09998_consen 30 AGPAAPVLVFDDATGRQVDLDLRGSDAEVLARLAPA 65 (187)
T ss_pred cCCCCceEEEECCCCCEEeeeCCCCHHHHHHhhccC
Confidence 355667888986 78988885556789999999754
No 64
>PF12860 PAS_7: PAS fold
Probab=26.81 E-value=74 Score=18.93 Aligned_cols=17 Identities=18% Similarity=0.667 Sum_probs=13.5
Q ss_pred cceeEEEecCCCceEEe
Q 036058 41 VEVALIIFSPAGKLILF 57 (80)
Q Consensus 41 ~~v~liv~~~~~~~~~~ 57 (80)
.+.+|++|+++|.+..|
T Consensus 4 l~~Gv~v~D~~~rl~~~ 20 (115)
T PF12860_consen 4 LPQGVAVFDSDGRLVFW 20 (115)
T ss_pred cCceEEEEcCCCeEEeE
Confidence 45689999999887665
No 65
>PF15119 APOC4: Apolipoprotein C4
Probab=26.30 E-value=32 Score=21.77 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=14.8
Q ss_pred ccccchhhhhhhhhh--hccC
Q 036058 22 AKRKSGLVKKAYEIS--TLCD 40 (80)
Q Consensus 22 ~KRk~gL~KKa~ELs--~Lc~ 40 (80)
..-|..|++||+.|+ +||+
T Consensus 76 ~sSkd~llnk~~sLCPrllC~ 96 (99)
T PF15119_consen 76 RSSKDSLLNKTHSLCPRLLCG 96 (99)
T ss_pred HHhHHHHHHHHHhhCchhhcc
Confidence 456789999999987 5665
No 66
>PF11232 Med25: Mediator complex subunit 25 PTOV activation and synapsin 2; InterPro: IPR021394 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-active part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain, an SD1 - synapsin 1 - domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This family is the combined PTOV and SD2 domains. the PTOV domain being the domain through which Med25 co-operates with the histone acetyltransferase CBP, but the function of the SD2 domain is unclear []. ; PDB: 2KY6_A 2L23_A 2XNF_A 2L6U_A.
Probab=26.22 E-value=73 Score=21.72 Aligned_cols=24 Identities=25% Similarity=0.641 Sum_probs=16.7
Q ss_pred hccCcceeEEEecCCCceE-Ee-cCC
Q 036058 37 TLCDVEVALIIFSPAGKLI-LF-DGK 60 (80)
Q Consensus 37 ~Lc~~~v~liv~~~~~~~~-~~-~s~ 60 (80)
.-|+..|-+++||++.+.| -| |-+
T Consensus 109 p~c~iKvL~LlYs~kk~~flG~IP~D 134 (152)
T PF11232_consen 109 PPCEIKVLMLLYSPKKKAFLGFIPND 134 (152)
T ss_dssp SSSS-SEEEEEEETTTTEEEEEEEST
T ss_pred CCCceEEEEEEEcCCCceEEEEcCCC
Confidence 4588899999999987644 34 443
No 67
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=26.03 E-value=75 Score=23.13 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=19.1
Q ss_pred hccCcceeEEEecCC--CceEEecCC
Q 036058 37 TLCDVEVALIIFSPA--GKLILFDGK 60 (80)
Q Consensus 37 ~Lc~~~v~liv~~~~--~~~~~~~s~ 60 (80)
++-|..+++++|+++ ||-|+.-++
T Consensus 75 ~~~G~~~~i~~yG~tgSGKT~tl~G~ 100 (335)
T smart00129 75 VLEGYNATIFAYGQTGSGKTYTMSGT 100 (335)
T ss_pred HhcCCceeEEEeCCCCCCCceEecCC
Confidence 578999999999996 577776454
No 68
>PF04798 Baculo_19: Baculovirus 19 kDa protein conserved region; InterPro: IPR006883 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf96; it is a family of uncharacterised viral proteins.
Probab=25.89 E-value=1.3e+02 Score=20.47 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=26.6
Q ss_pred hhhccC-cceeEEEecC--------CCceEEecCCCCHHHHHHHhcC
Q 036058 35 ISTLCD-VEVALIIFSP--------AGKLILFDGKKRLDEILMHFID 72 (80)
Q Consensus 35 Ls~Lc~-~~v~liv~~~--------~~~~~~~~s~~~~~~il~~y~~ 72 (80)
.+++|. -+-++|.|+. +|...+-+.+.+--.++++|.+
T Consensus 65 s~~~CP~nE~avVrf~~~dI~~iNe~G~y~~~CT~v~sl~LlehF~~ 111 (146)
T PF04798_consen 65 SSVFCPPNEFAVVRFTRNDIKSINETGVYNIVCTNVSSLTLLEHFVT 111 (146)
T ss_pred ccccCCCCceEEEEEeccchhhhhcCCeEEEEEeccccHHHHHHHhc
Confidence 567888 7888888743 4544445555666789999975
No 69
>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....
Probab=25.85 E-value=30 Score=18.25 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=14.0
Q ss_pred cCcce---eEEEecCCCceEEecCCC
Q 036058 39 CDVEV---ALIIFSPAGKLILFDGKK 61 (80)
Q Consensus 39 c~~~v---~liv~~~~~~~~~~~s~~ 61 (80)
||..| +-.-+.-+|+.|.|.|..
T Consensus 6 cg~~v~~~~~~~~~y~G~~Y~FCS~~ 31 (47)
T PF04945_consen 6 CGMKVPGNAAYSVEYNGRTYYFCSEG 31 (47)
T ss_dssp GG-BE-----EEEEETTEEEEESSHH
T ss_pred CCCEEccCccEEEEECCEEEEEcCHH
Confidence 66666 445555578999997754
No 70
>PRK09732 hypothetical protein; Provisional
Probab=25.67 E-value=1.3e+02 Score=19.74 Aligned_cols=30 Identities=13% Similarity=0.245 Sum_probs=21.8
Q ss_pred hhhhhhhhhccCcceeEEEecCCCceEEec
Q 036058 29 VKKAYEISTLCDVEVALIIFSPAGKLILFD 58 (80)
Q Consensus 29 ~KKa~ELs~Lc~~~v~liv~~~~~~~~~~~ 58 (80)
..-|.+-+.-=|..|++.|++..|.+..|-
T Consensus 16 ~~aA~~~A~~~g~~v~iaVvD~~G~l~a~~ 45 (134)
T PRK09732 16 IAAGQEEAQKNNWSVSIAVADDGGHLLALS 45 (134)
T ss_pred HHHHHHHHHHhCCCEEEEEEcCCCCEEEEE
Confidence 344444455558899999999999887763
No 71
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=25.42 E-value=89 Score=17.50 Aligned_cols=20 Identities=10% Similarity=0.223 Sum_probs=16.8
Q ss_pred CCceEEecCCCCHHHHHHHh
Q 036058 51 AGKLILFDGKKRLDEILMHF 70 (80)
Q Consensus 51 ~~~~~~~~s~~~~~~il~~y 70 (80)
||+++.|+.+-++.++++..
T Consensus 6 Ng~~~~~~~~~tl~~ll~~l 25 (66)
T PRK08053 6 NDQPMQCAAGQTVHELLEQL 25 (66)
T ss_pred CCeEEEcCCCCCHHHHHHHc
Confidence 68999998877899999864
No 72
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=25.29 E-value=67 Score=23.52 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=20.2
Q ss_pred hhccCcceeEEEecCC--CceEEecCC
Q 036058 36 STLCDVEVALIIFSPA--GKLILFDGK 60 (80)
Q Consensus 36 s~Lc~~~v~liv~~~~--~~~~~~~s~ 60 (80)
+++-|..++++.|+++ ||-|+.-++
T Consensus 79 ~~~~G~n~~i~ayGqtGSGKTyTm~G~ 105 (322)
T cd01367 79 HVFEGGVATCFAYGQTGSGKTYTMLGD 105 (322)
T ss_pred HHhCCCceEEEeccCCCCCCceEecCc
Confidence 5778999999999996 488876554
No 73
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=24.40 E-value=1.3e+02 Score=16.68 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=20.8
Q ss_pred hhhhhccCccee--EEEecCCCceEEecCC---CCHHHHHHHh
Q 036058 33 YEISTLCDVEVA--LIIFSPAGKLILFDGK---KRLDEILMHF 70 (80)
Q Consensus 33 ~ELs~Lc~~~v~--liv~~~~~~~~~~~s~---~~~~~il~~y 70 (80)
.=||+.++..|. .|-..+++ .+...+. +++.++++.|
T Consensus 36 ~~Lsv~~~~~v~h~~I~~~~~~-~~~~~~~~~F~sl~~LV~~y 77 (77)
T PF00017_consen 36 YVLSVRFDGKVKHFRINRTENG-GYFLSDGKKFPSLSDLVEHY 77 (77)
T ss_dssp EEEEEEETTEEEEEEEEEETTS-EEESSTSSEBSSHHHHHHHH
T ss_pred cccccccccccEEEEEEecCCc-eEEccCCCcCCCHHHHHHhC
Confidence 456777776663 33344444 2333222 6788988876
No 74
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=24.37 E-value=54 Score=21.88 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=19.9
Q ss_pred hhhccCcceeEEEecCCCceEEecC
Q 036058 35 ISTLCDVEVALIIFSPAGKLILFDG 59 (80)
Q Consensus 35 Ls~Lc~~~v~liv~~~~~~~~~~~s 59 (80)
+++.++|++-+++.+.+.....||.
T Consensus 58 i~ta~dad~V~ll~dat~~~~~~pP 82 (143)
T PF10662_consen 58 IVTAQDADVVLLLQDATEPRSVFPP 82 (143)
T ss_pred HHHHhhCCEEEEEecCCCCCccCCc
Confidence 6788999999999998876556644
No 75
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=24.33 E-value=97 Score=22.89 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=20.5
Q ss_pred hhccCcceeEEEecCCC--ceEEecCC
Q 036058 36 STLCDVEVALIIFSPAG--KLILFDGK 60 (80)
Q Consensus 36 s~Lc~~~v~liv~~~~~--~~~~~~s~ 60 (80)
+++-|..++++.|+++| |-|+.-++
T Consensus 69 ~~~~G~n~ti~aYGqTGSGKTyTm~G~ 95 (337)
T cd01373 69 DCLSGYNGSIFAYGQTGSGKTYTMMGP 95 (337)
T ss_pred HHhCCCceeEEEeCCCCCCceEEecCC
Confidence 46899999999999964 88887554
No 76
>PF09579 Spore_YtfJ: Sporulation protein YtfJ (Spore_YtfJ); InterPro: IPR014229 Proteins in this entry, exemplified by YtfJ of Bacillus subtilis, are encoded by bacterial genomes if, and only if, the species is capable of endospore formation. YtfJ was confirmed in spores of B. subtilis; it appears to be expressed in the forespore under control of SigF [].
Probab=23.77 E-value=1.4e+02 Score=17.95 Aligned_cols=27 Identities=19% Similarity=0.498 Sum_probs=16.5
Q ss_pred ceeEEEecCCC-ceEEecCCCCHHHHHH
Q 036058 42 EVALIIFSPAG-KLILFDGKKRLDEILM 68 (80)
Q Consensus 42 ~v~liv~~~~~-~~~~~~s~~~~~~il~ 68 (80)
++|++|...++ ++........++.+++
T Consensus 48 Pva~lVI~~~~v~~~~~~~~~~~~kli~ 75 (83)
T PF09579_consen 48 PVAFLVIKGDGVRFLPLKNNNPLDKLID 75 (83)
T ss_pred EEEEEEEeCCEEEEEECCCCchHHHHHH
Confidence 67888888755 3444434455666664
No 77
>COG3644 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.52 E-value=1.6e+02 Score=20.61 Aligned_cols=37 Identities=22% Similarity=0.465 Sum_probs=28.4
Q ss_pred hhhccCcceeEEEec-CCCceEEecCCCCHHHHHHHhc
Q 036058 35 ISTLCDVEVALIIFS-PAGKLILFDGKKRLDEILMHFI 71 (80)
Q Consensus 35 Ls~Lc~~~v~liv~~-~~~~~~~~~s~~~~~~il~~y~ 71 (80)
|-++-+.+.-|+||+ ++|.+..|--..+.++++.|+.
T Consensus 27 ~k~~~~~ea~vLiFDn~tgr~vdfDl~Gs~e~v~AR~~ 64 (194)
T COG3644 27 LKVQEPTEAQVLIFDNATGRPVDFDLSGSLEDVLARLL 64 (194)
T ss_pred HHhhcCccCCEEEeeCCCCCceeeecCCCHHHHHHhhc
Confidence 444455677788998 5899998855667899999986
No 78
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=23.36 E-value=44 Score=26.28 Aligned_cols=47 Identities=17% Similarity=0.282 Sum_probs=39.4
Q ss_pred eEEecCCCcccchhccccchhhhhhhhhhhccCcceeEEEecCCCceEEecCC
Q 036058 8 IKKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLILFDGK 60 (80)
Q Consensus 8 ik~I~~~~~R~~tf~KRk~gL~KKa~ELs~Lc~~~v~liv~~~~~~~~~~~s~ 60 (80)
|+.+-|...-..+|.++..| ||+.+|+..+-..++....-..+|+.+
T Consensus 18 i~~~~d~~~ps~~~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~ 64 (412)
T COG5068 18 IQGDSDANIPSNTINRLSPG------ELSQQNDGKFDVMIFDSKHSVRVYSNE 64 (412)
T ss_pred cccccccCCccccccccCcc------cchhhccCCcccccccccccccccCCc
Confidence 67788888888999999999 999999999988888776666777554
No 79
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=23.13 E-value=1.5e+02 Score=16.64 Aligned_cols=24 Identities=21% Similarity=0.510 Sum_probs=16.4
Q ss_pred eEEEecCCCceEEecCCCCHHHHH
Q 036058 44 ALIIFSPAGKLILFDGKKRLDEIL 67 (80)
Q Consensus 44 ~liv~~~~~~~~~~~s~~~~~~il 67 (80)
.+++|.+++.++.|.+..+.+++.
T Consensus 72 ~~~~~~~~~~~~~~~g~~~~~~l~ 95 (102)
T TIGR01126 72 TIKFFPKGKKPVDYEGGRDLEAIV 95 (102)
T ss_pred EEEEecCCCcceeecCCCCHHHHH
Confidence 466777666688898876666653
No 80
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=22.80 E-value=1.9e+02 Score=21.39 Aligned_cols=43 Identities=23% Similarity=0.267 Sum_probs=31.7
Q ss_pred hhhhccCc-----ceeEEEecCCCceEEecCCCCHHHHHHHhcCCCcc
Q 036058 34 EISTLCDV-----EVALIIFSPAGKLILFDGKKRLDEILMHFIDLPHH 76 (80)
Q Consensus 34 ELs~Lc~~-----~v~liv~~~~~~~~~~~s~~~~~~il~~y~~~~~~ 76 (80)
-++.|-|| +|++|-|..+.--..||.+.+++.+-++...+|.-
T Consensus 104 ~~~lL~dAYq~RdkvavI~F~G~~A~lll~pT~sv~~~~~~L~~l~~G 151 (261)
T COG1240 104 ALSLLRDAYQRRDKVAVIAFRGEKAELLLPPTSSVELAERALERLPTG 151 (261)
T ss_pred HHHHHHHHHHccceEEEEEecCCcceEEeCCcccHHHHHHHHHhCCCC
Confidence 34555554 89999999777677788888887777777777654
No 81
>PF09158 MotCF: Bacteriophage T4 MotA, C-terminal; InterPro: IPR015241 Transcription factor MotA is required for the activation of middle promoters in Bacteriophage T4, in addition to phage T4 co-activator AsiA, and sigma-70-containing Escherichia coli RNA polymerase. Phage T4 middle promoters have the sigma70 -10 DNA element, but not the -35 element; instead, they have a MotA box at -30 to which the transcription factor MotA binds []. MotA and AsiA interact with the C-terminal of sigma70 (region 4), which normally binds the -35 element and the beta-flap, thereby diverting sigma70 away from host promoters that require -35 element-binding to phage T4 middle promoters. Transcription factor MotA has two domains: an N-terminal domain required for binding to sigma70, and a C-terminal domain required for binding to the -30 MotA box element in the phage T4 middle promoter. This entry represents the C-terminal domain of MotA factors, which adopts a compact alpha/beta structure comprising three alpha-helices and six beta-strands in the order: alpha1-beta1-beta2-beta3-beta4-alpha2-beta5-beta6-alpha3. In this architecture, the domain's hydrophobic core is at the sheet-helix interface, and the second surface of the beta-sheet is completely exposed. It contains a DNA-binding motif, with a consensus sequence containing nine base pairs (5'-TTTGCTTTA-3'), that appears to bind to various mot boxes, allowing access to the minor groove towards the 5'-end of this sequence and the major groove towards the 3'-end [].; PDB: 1KAF_B.
Probab=22.62 E-value=34 Score=21.99 Aligned_cols=24 Identities=33% Similarity=0.688 Sum_probs=18.6
Q ss_pred ceeeEEe-cCCCcccchhccccchh
Q 036058 5 RLQIKKI-ENRTYRHITFAKRKSGL 28 (80)
Q Consensus 5 ki~ik~I-~~~~~R~~tf~KRk~gL 28 (80)
+++++-+ +|.++=.++|.||-.|+
T Consensus 19 ~ie~K~~~~~RSN~~i~f~KRt~Gi 43 (103)
T PF09158_consen 19 KIEVKEIVIDRSNYEIRFKKRTKGI 43 (103)
T ss_dssp T--EEEEEEETTEEEEEEEEEETTE
T ss_pred ceeeeeeEeeccceEEeeecccCce
Confidence 4677776 78888899999999996
No 82
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=22.59 E-value=1.1e+02 Score=16.77 Aligned_cols=21 Identities=5% Similarity=0.094 Sum_probs=17.0
Q ss_pred CCceEEecCCCCHHHHHHHhc
Q 036058 51 AGKLILFDGKKRLDEILMHFI 71 (80)
Q Consensus 51 ~~~~~~~~s~~~~~~il~~y~ 71 (80)
+|+.+.+|...++.++++.+.
T Consensus 6 Ng~~~~~~~~~tl~~ll~~l~ 26 (65)
T PRK06944 6 NQQTLSLPDGATVADALAAYG 26 (65)
T ss_pred CCEEEECCCCCcHHHHHHhhC
Confidence 578888987778999998763
No 83
>KOG3134 consensus Predicted membrane protein [Function unknown]
Probab=22.40 E-value=40 Score=24.48 Aligned_cols=36 Identities=25% Similarity=0.490 Sum_probs=23.4
Q ss_pred hhccCcce-e-EEEecCCC-ceEEecCCCCHHHHHHHhcCCC
Q 036058 36 STLCDVEV-A-LIIFSPAG-KLILFDGKKRLDEILMHFIDLP 74 (80)
Q Consensus 36 s~Lc~~~v-~-liv~~~~~-~~~~~~s~~~~~~il~~y~~~~ 74 (80)
++-||.+| . -..|||++ +...- ++.++++|+|-+..
T Consensus 3 CVeCg~~vksLy~~Ys~g~irlt~C---~nC~e~vDkYiE~d 41 (225)
T KOG3134|consen 3 CVECGSEVKSLYTQYSPGNIRLTKC---PNCQEVVDKYIELD 41 (225)
T ss_pred ccccCchHHHHHHhcCCCcEEEeeC---CchhhHHHhHeehh
Confidence 56688777 2 35566654 44444 56889999997653
No 84
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=22.05 E-value=1.6e+02 Score=16.71 Aligned_cols=24 Identities=17% Similarity=0.643 Sum_probs=15.2
Q ss_pred EEEecCCC--ceEEecCCCCHHHHHH
Q 036058 45 LIIFSPAG--KLILFDGKKRLDEILM 68 (80)
Q Consensus 45 liv~~~~~--~~~~~~s~~~~~~il~ 68 (80)
+++|.+++ .+..|.+..+++++++
T Consensus 77 ~~~~~~~~~~~~~~~~g~~~~~~l~~ 102 (104)
T cd02995 77 ILFFPAGDKSNPIKYEGDRTLEDLIK 102 (104)
T ss_pred EEEEcCCCcCCceEccCCcCHHHHHh
Confidence 55565554 4677877777776653
No 85
>smart00782 PhnA_Zn_Ribbon PhnA Zinc-Ribbon. This protein family includes an uncharacterised member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterised phosphonoacetate hydrolase designated PhnA.
Probab=22.02 E-value=46 Score=18.21 Aligned_cols=22 Identities=18% Similarity=0.561 Sum_probs=15.8
Q ss_pred hhhhhhhhhhccCcceeEEEec
Q 036058 28 LVKKAYEISTLCDVEVALIIFS 49 (80)
Q Consensus 28 L~KKa~ELs~Lc~~~v~liv~~ 49 (80)
|.+.+..-+=||+++..|.+|.
T Consensus 2 L~~Rs~~kCELC~a~~~L~vy~ 23 (47)
T smart00782 2 LLARCESKCELCGSDSPLVVYA 23 (47)
T ss_pred hhHHcCCcccCcCCCCCceEEe
Confidence 4455566688999988777765
No 86
>PRK07440 hypothetical protein; Provisional
Probab=22.01 E-value=1.1e+02 Score=17.57 Aligned_cols=21 Identities=14% Similarity=0.233 Sum_probs=17.4
Q ss_pred CCCceEEecCCCCHHHHHHHh
Q 036058 50 PAGKLILFDGKKRLDEILMHF 70 (80)
Q Consensus 50 ~~~~~~~~~s~~~~~~il~~y 70 (80)
=+|+++.++...++.++|..+
T Consensus 9 vNG~~~~~~~~~tl~~lL~~l 29 (70)
T PRK07440 9 VNGETRTCSSGTSLPDLLQQL 29 (70)
T ss_pred ECCEEEEcCCCCCHHHHHHHc
Confidence 368999998887899999865
No 87
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=21.59 E-value=1.6e+02 Score=21.17 Aligned_cols=28 Identities=29% Similarity=0.578 Sum_probs=20.5
Q ss_pred eeEEEecCCCce---EEecCC--CCHHHHHHHh
Q 036058 43 VALIIFSPAGKL---ILFDGK--KRLDEILMHF 70 (80)
Q Consensus 43 v~liv~~~~~~~---~~~~s~--~~~~~il~~y 70 (80)
-+|.|++|+.+. +.||+. -++++||.-.
T Consensus 132 Ravfvi~pdkKirLs~lYP~ttGRN~dEiLRvi 164 (224)
T KOG0854|consen 132 RAVFVIDPDKKIRLSFLYPSTTGRNFDEILRVI 164 (224)
T ss_pred EEEEEECCCceEEEEEEcccccCcCHHHHHHHH
Confidence 478999998763 678986 3678876543
No 88
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=21.48 E-value=93 Score=22.89 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=20.2
Q ss_pred hhccCcceeEEEecCC--CceEEecCC
Q 036058 36 STLCDVEVALIIFSPA--GKLILFDGK 60 (80)
Q Consensus 36 s~Lc~~~v~liv~~~~--~~~~~~~s~ 60 (80)
+++.|..++++.|+++ ||-|+-.++
T Consensus 75 ~~~~G~n~~i~ayG~tgSGKTyTm~G~ 101 (334)
T cd01375 75 SALDGYNGTIFAYGQTGAGKTFTMTGG 101 (334)
T ss_pred HHhCCCccceeeecCCCCCCeEEccCC
Confidence 4789999999999996 588876453
No 89
>PF10114 PocR: Sensory domain found in PocR; InterPro: IPR018771 This entry is thought to act as a sensory domain in histidine kinases catalysing the reaction: ATP + protein L-histidine = ADP + protein N- phospho-L-histidine.
Probab=21.48 E-value=92 Score=20.15 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=16.5
Q ss_pred hhhccCcceeEEEecCCCceEEecCC
Q 036058 35 ISTLCDVEVALIIFSPAGKLILFDGK 60 (80)
Q Consensus 35 Ls~Lc~~~v~liv~~~~~~~~~~~s~ 60 (80)
++-++| ++++|++++|+|.+-+++
T Consensus 17 fs~~tg--l~~~i~d~~G~~l~~~~~ 40 (173)
T PF10114_consen 17 FSKATG--LSIVIVDPDGNPLTQPSN 40 (173)
T ss_pred HHHHHC--CcEEEEeCCCCEEeeCCC
Confidence 444554 457789999998866564
No 90
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=21.39 E-value=1.3e+02 Score=16.53 Aligned_cols=25 Identities=12% Similarity=0.477 Sum_probs=15.9
Q ss_pred eEEEecCC-CceEEecCCCCHHHHHH
Q 036058 44 ALIIFSPA-GKLILFDGKKRLDEILM 68 (80)
Q Consensus 44 ~liv~~~~-~~~~~~~s~~~~~~il~ 68 (80)
++++|.++ ..+..|.+..+++++++
T Consensus 74 t~~~~~~~~~~~~~~~g~~~~~~i~~ 99 (101)
T cd02961 74 TIKLFPNGSKEPVKYEGPRTLESLVE 99 (101)
T ss_pred EEEEEcCCCcccccCCCCcCHHHHHh
Confidence 46666666 35667766666776654
No 91
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=20.68 E-value=77 Score=15.41 Aligned_cols=19 Identities=32% Similarity=0.525 Sum_probs=12.7
Q ss_pred ceeEEEecCCCceEEecCC
Q 036058 42 EVALIIFSPAGKLILFDGK 60 (80)
Q Consensus 42 ~v~liv~~~~~~~~~~~s~ 60 (80)
.-.-..++|+|+-..|.+.
T Consensus 10 ~~~~p~~SpDGk~i~f~s~ 28 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSN 28 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEE
T ss_pred cccCEEEecCCCEEEEEec
Confidence 3456788999988777553
No 92
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=20.53 E-value=1.6e+02 Score=17.51 Aligned_cols=23 Identities=17% Similarity=0.530 Sum_probs=15.4
Q ss_pred EEEecCCC-ceEEecCC-CCHHHHH
Q 036058 45 LIIFSPAG-KLILFDGK-KRLDEIL 67 (80)
Q Consensus 45 liv~~~~~-~~~~~~s~-~~~~~il 67 (80)
+++|++++ .++.|++. -+.++++
T Consensus 82 i~~f~~~~~~~~~y~g~~~~~~~l~ 106 (109)
T cd02993 82 ILFFPKNSRQPIKYPSEQRDVDSLL 106 (109)
T ss_pred EEEEcCCCCCceeccCCCCCHHHHH
Confidence 56676654 68889885 4677654
No 93
>KOG4316 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.45 E-value=23 Score=24.42 Aligned_cols=41 Identities=24% Similarity=0.366 Sum_probs=24.2
Q ss_pred hhhhhccCcceeEEEec----CCC-c-eEEecC----CCCHHHHHHHhcCC
Q 036058 33 YEISTLCDVEVALIIFS----PAG-K-LILFDG----KKRLDEILMHFIDL 73 (80)
Q Consensus 33 ~ELs~Lc~~~v~liv~~----~~~-~-~~~~~s----~~~~~~il~~y~~~ 73 (80)
.+++.||++...+.--. |.. . ..-|.. ...+++||+||..+
T Consensus 43 ~a~~~lcq~p~vla~r~a~~~Ps~~r~~t~Fs~~kGkrktvkaVldRFkRL 93 (172)
T KOG4316|consen 43 SARNLLCQHPSVLANRMAPVLPSVVRSLTYFSARKGKRKTVKAVLDRFKRL 93 (172)
T ss_pred hHHHhHhcCcHHHHhccCCCCcchhhhhhhhhhhhcccccHHHHHHHHHhc
Confidence 57889998876443111 221 2 222321 15699999999754
No 94
>PF13082 DUF3931: Protein of unknown function (DUF3931)
Probab=20.40 E-value=28 Score=20.06 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=27.3
Q ss_pred cceeeEEecCCCcccchhccccchhhhhhhhhh--hccC
Q 036058 4 VRLQIKKIENRTYRHITFAKRKSGLVKKAYEIS--TLCD 40 (80)
Q Consensus 4 ~ki~ik~I~~~~~R~~tf~KRk~gL~KKa~ELs--~Lc~ 40 (80)
+|-.+--|+-+....-||+--+--.-.|.+|+| +|||
T Consensus 6 kkcnvisidgkkkksdtysypklvvenktyefssfvlcg 44 (66)
T PF13082_consen 6 KKCNVISIDGKKKKSDTYSYPKLVVENKTYEFSSFVLCG 44 (66)
T ss_pred ccccEEEeccccccCCcccCceEEEeCceEEEEEEEEEc
Confidence 445555677777788888888878888999987 4565
No 95
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=20.38 E-value=74 Score=20.45 Aligned_cols=54 Identities=22% Similarity=0.218 Sum_probs=28.6
Q ss_pred CCccceeeEEecCCCcccchhccccchhhhhhhhhhhccCc----ceeEEEecCCCceEEe
Q 036058 1 MGRVRLQIKKIENRTYRHITFAKRKSGLVKKAYEISTLCDV----EVALIIFSPAGKLILF 57 (80)
Q Consensus 1 MgR~ki~ik~I~~~~~R~~tf~KRk~gL~KKa~ELs~Lc~~----~v~liv~~~~~~~~~~ 57 (80)
|||++.+.+.|.. .|+..+.|+...++ =-+|.++.|-+ .+++++-+..|.-+.+
T Consensus 1 MG~rr~krr~~ik--~~~~~L~k~FtCp~-Cghe~vs~ctvkk~~~~g~~~Cg~CGls~e~ 58 (104)
T COG4888 1 MGRRRRKRRKIIK--RRPQVLPKTFTCPR-CGHEKVSSCTVKKTVNIGTAVCGNCGLSFEC 58 (104)
T ss_pred CCcccccccccCc--ccCccCCceEecCc-cCCeeeeEEEEEecCceeEEEcccCcceEEE
Confidence 9999988877654 22222344333322 12344444433 3456666667765554
No 96
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=20.21 E-value=1.3e+02 Score=23.64 Aligned_cols=27 Identities=15% Similarity=0.538 Sum_probs=21.8
Q ss_pred ceeEEEecCCCceEEecCCCCHHHHHHHhc
Q 036058 42 EVALIIFSPAGKLILFDGKKRLDEILMHFI 71 (80)
Q Consensus 42 ~v~liv~~~~~~~~~~~s~~~~~~il~~y~ 71 (80)
.+-+++++++|+|..| .++.+|++.|.
T Consensus 298 ~~Nm~~~d~~g~~~~~---~~~~~Il~~f~ 324 (439)
T PHA02592 298 SQNITVINENGKLKVY---ENAEDLIRDFV 324 (439)
T ss_pred eeeEEEEecCCeeeec---CCHHHHHHHHH
Confidence 3567889999999888 56889988875
No 97
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=20.12 E-value=1.1e+02 Score=20.20 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=21.7
Q ss_pred chhhhhhhhhhhccCcceeEEEecCC
Q 036058 26 SGLVKKAYEISTLCDVEVALIIFSPA 51 (80)
Q Consensus 26 ~gL~KKa~ELs~Lc~~~v~liv~~~~ 51 (80)
.-|+++|.+++---+...+++.|+|.
T Consensus 22 q~Li~~~~~~a~~~~~~~~v~tF~~~ 47 (157)
T PF06574_consen 22 QKLIKKAVEIAKEKGLKSVVLTFDPH 47 (157)
T ss_dssp HHHHHHHHHHHHHCT-EEEEEEESS-
T ss_pred HHHHHHHhhhhhhcccceEEEEcccC
Confidence 45899999999999999999999985
Done!