BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036061
(284 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FPE|A Chain A, Crystal Structure Of Mtnas In Complex With
Thermonicotianamine
pdb|3FPE|B Chain B, Crystal Structure Of Mtnas In Complex With
Thermonicotianamine
pdb|3FPF|A Chain A, Crystal Structure Of Mtnas In Complex With Mta And Tna
pdb|3FPF|B Chain B, Crystal Structure Of Mtnas In Complex With Mta And Tna
Length = 298
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 97/197 (49%), Gaps = 13/197 (6%)
Query: 85 LELEFATFFAKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPL 144
LE+E A ++ P L F +Y Y++L E + ++ F+G GP+PL
Sbjct: 80 LEMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAAL---GRFRRGERAVFIGGGPLPL 136
Query: 145 TSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD 204
T I+++ H+ + +I+ +++R+++ + + + +T D V + L E+D
Sbjct: 137 TGILLS--HVYGMRVNVVEIEPDIAELSRKVIEG-LGVDG-VNVITGD-ETVIDGL-EFD 190
Query: 205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKHDLLDFELLS 264
+ +AAL E K ++ ++I +Y+ ++ R+ G RA LY V D+ F
Sbjct: 191 VLMVAALA----EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDITGFRRAG 246
Query: 265 VFHPTNEVINSVVLVRK 281
V P+ +V N+ VLV K
Sbjct: 247 VVLPSGKVNNTSVLVFK 263
>pdb|3O31|A Chain A, E81q Mutant Of Mtnas In Complex With A Reaction
Intermediate
pdb|3O31|B Chain B, E81q Mutant Of Mtnas In Complex With A Reaction
Intermediate
Length = 296
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 97/197 (49%), Gaps = 13/197 (6%)
Query: 85 LELEFATFFAKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPL 144
L++E A ++ P L F +Y Y++L E + ++ F+G GP+PL
Sbjct: 79 LQMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAAL---GRFRRGERAVFIGGGPLPL 135
Query: 145 TSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD 204
T I+++ H+ + +I+ +++R+++ + + + +T D V + L E+D
Sbjct: 136 TGILLS--HVYGMRVNVVEIEPDIAELSRKVIEG-LGVDG-VNVITGD-ETVIDGL-EFD 189
Query: 205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKHDLLDFELLS 264
+ +AAL E K ++ ++I +Y+ ++ R+ G RA LY V D+ F
Sbjct: 190 VLMVAALA----EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDITGFRRAG 245
Query: 265 VFHPTNEVINSVVLVRK 281
V P+ +V N+ VLV K
Sbjct: 246 VVLPSGKVNNTSVLVFK 262
>pdb|3FPG|A Chain A, Crystal Structure Of E81q Mutant Of Mtnas
pdb|3FPG|B Chain B, Crystal Structure Of E81q Mutant Of Mtnas
pdb|3FPH|A Chain A, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
L-Glutamate
pdb|3FPH|B Chain B, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
L-Glutamate
pdb|3FPJ|A Chain A, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
S- Adenosylmethionine
pdb|3FPJ|B Chain B, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
S- Adenosylmethionine
Length = 298
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 97/197 (49%), Gaps = 13/197 (6%)
Query: 85 LELEFATFFAKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPL 144
L++E A ++ P L F +Y Y++L E + ++ F+G GP+PL
Sbjct: 80 LQMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAAL---GRFRRGERAVFIGGGPLPL 136
Query: 145 TSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD 204
T I+++ H+ + +I+ +++R+++ + + + +T D V + L E+D
Sbjct: 137 TGILLS--HVYGMRVNVVEIEPDIAELSRKVIEG-LGVDG-VNVITGD-ETVIDGL-EFD 190
Query: 205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKHDLLDFELLS 264
+ +AAL E K ++ ++I +Y+ ++ R+ G RA LY V D+ F
Sbjct: 191 VLMVAALA----EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDITGFRRAG 246
Query: 265 VFHPTNEVINSVVLVRK 281
V P+ +V N+ VLV K
Sbjct: 247 VVLPSGKVNNTSVLVFK 263
>pdb|3IHJ|A Chain A, Human Alanine Aminotransferase 2 In Complex With Plp
Length = 498
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/55 (21%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 25 IHASIANLESLKPSKQVNSLFTHLVKLCTPPSSIDIKTLPQEVQEMRESLIVLCG 79
I A+I + +++ +Q + ++ LCT P+ +D + P++ ++ ++ CG
Sbjct: 66 IRANIGDAQAM--GQQPITFLRQVMALCTYPNLLDSPSFPEDAKKRARRILQACG 118
>pdb|2J5A|A Chain A, Folding Of S6 Structures With Divergent Amino-Acid
Composition: Pathway Flexibility Within Partly
Overlapping Foldons
Length = 110
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKD-GGVLLVRSAKGARAFLYPV 251
Y+ +F A +S+EE K + +++++K GG +L G R YP+
Sbjct: 10 YETVF-AVKPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDWGMRQLAYPI 58
>pdb|2P0O|A Chain A, Crystal Structure Of A Conserved Protein From Locus
Ef_2437 In Enterococcus Faecalis With An Unknown
Function
Length = 372
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 14/82 (17%)
Query: 156 STHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK-----------EKLGEYD 204
TH + D AA DV R +S E ++ + T + Q + EK G Y
Sbjct: 260 GTHTNRLD---AARDVLRSELSRTSEXFRKDEIATIESEQTEARPVGTVTIDNEKYGRYX 316
Query: 205 CIFLAALVGMSKEEKVKIIKHI 226
LV + K+EKV I I
Sbjct: 317 GEIQVTLVDLPKDEKVNTITRI 338
>pdb|1XJ5|A Chain A, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|B Chain B, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|C Chain C, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|D Chain D, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|2Q41|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
Length = 334
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 11/121 (9%)
Query: 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSS-DIEFEK-R 185
+ NPKKV +G G + V H D +ID+ DV++Q I +E R
Sbjct: 118 IPNPKKVLVIGGGDGGVLREVA--RHASIEQIDXCEIDKXVVDVSKQFFPDVAIGYEDPR 175
Query: 186 MKFVTCDIMQVKEKL--GEYDCIFLAAL--VGMSKE--EKVKIIKHIRKYMKDGGVLLVR 239
+ V D + + G YD + + + +G +KE EK + + + ++ GGV+ +
Sbjct: 176 VNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEK-PFFQSVARALRPGGVVCTQ 234
Query: 240 S 240
+
Sbjct: 235 A 235
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,676,281
Number of Sequences: 62578
Number of extensions: 298185
Number of successful extensions: 1046
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1037
Number of HSP's gapped (non-prelim): 10
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)