Query 036061
Match_columns 284
No_of_seqs 251 out of 1110
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 09:01:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036061.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036061hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03059 NAS: Nicotianamine sy 100.0 1.2E-76 2.6E-81 541.4 19.5 269 13-282 3-272 (276)
2 PLN03075 nicotianamine synthas 100.0 4E-75 8.6E-80 536.0 28.7 274 9-283 2-276 (296)
3 PF12847 Methyltransf_18: Meth 99.8 2.2E-18 4.7E-23 135.8 11.3 108 130-240 1-111 (112)
4 PLN02244 tocopherol O-methyltr 99.7 4.3E-16 9.3E-21 147.3 17.1 164 66-240 53-223 (340)
5 COG2226 UbiE Methylase involve 99.7 3.3E-16 7.2E-21 141.0 12.8 109 127-240 48-156 (238)
6 PF01596 Methyltransf_3: O-met 99.7 2E-16 4.2E-21 139.9 9.2 107 129-241 44-156 (205)
7 COG4122 Predicted O-methyltran 99.7 3.9E-16 8.5E-21 138.9 10.9 108 128-241 57-167 (219)
8 PRK11207 tellurite resistance 99.7 3.3E-15 7.1E-20 130.9 16.4 106 127-239 27-133 (197)
9 PF01209 Ubie_methyltran: ubiE 99.7 4.3E-16 9.4E-21 140.2 11.0 110 127-240 44-153 (233)
10 PRK15451 tRNA cmo(5)U34 methyl 99.7 2.1E-15 4.5E-20 136.4 15.0 127 106-240 36-164 (247)
11 PLN02781 Probable caffeoyl-CoA 99.7 7.8E-16 1.7E-20 138.6 12.0 107 129-241 67-179 (234)
12 PF13847 Methyltransf_31: Meth 99.7 1.4E-15 3.1E-20 127.1 12.5 110 129-242 2-112 (152)
13 PRK00107 gidB 16S rRNA methylt 99.6 3.5E-15 7.6E-20 130.1 15.0 104 129-242 44-147 (187)
14 TIGR00138 gidB 16S rRNA methyl 99.6 5.2E-15 1.1E-19 128.3 14.9 135 130-274 42-176 (181)
15 PLN02476 O-methyltransferase 99.6 3.6E-15 7.7E-20 137.3 12.4 108 128-241 116-229 (278)
16 TIGR00477 tehB tellurite resis 99.6 1.4E-14 3E-19 126.7 15.2 105 127-239 27-132 (195)
17 PLN02589 caffeoyl-CoA O-methyl 99.6 3.7E-15 8.1E-20 135.2 11.5 107 129-241 78-191 (247)
18 PF08241 Methyltransf_11: Meth 99.6 4.5E-15 9.8E-20 112.2 8.6 95 135-238 1-95 (95)
19 PRK12335 tellurite resistance 99.6 4.3E-14 9.2E-19 130.6 16.6 103 129-239 119-222 (287)
20 TIGR00740 methyltransferase, p 99.6 3.5E-14 7.6E-19 127.4 15.3 126 107-240 34-161 (239)
21 TIGR02469 CbiT precorrin-6Y C5 99.6 5E-14 1.1E-18 112.1 13.9 106 127-240 16-122 (124)
22 PTZ00098 phosphoethanolamine N 99.6 2.3E-14 5E-19 131.0 13.5 112 122-240 44-156 (263)
23 PRK13944 protein-L-isoaspartat 99.6 5.6E-14 1.2E-18 123.8 15.1 112 126-246 68-179 (205)
24 PLN02233 ubiquinone biosynthes 99.6 3.8E-14 8.2E-19 129.5 14.2 111 127-240 70-182 (261)
25 TIGR03840 TMPT_Se_Te thiopurin 99.6 5.8E-14 1.3E-18 124.8 15.0 135 89-240 3-152 (213)
26 PRK11036 putative S-adenosyl-L 99.6 3E-14 6.6E-19 129.2 13.4 107 128-240 42-149 (255)
27 TIGR02752 MenG_heptapren 2-hep 99.6 7.3E-14 1.6E-18 124.1 15.3 113 124-240 39-151 (231)
28 PF02353 CMAS: Mycolic acid cy 99.6 3.8E-14 8.1E-19 130.5 12.4 112 122-240 54-166 (273)
29 PRK11873 arsM arsenite S-adeno 99.6 6.3E-14 1.4E-18 128.0 13.6 109 128-240 75-183 (272)
30 PRK13942 protein-L-isoaspartat 99.5 9.4E-14 2E-18 123.1 14.2 109 123-241 69-177 (212)
31 PLN02396 hexaprenyldihydroxybe 99.5 5.2E-14 1.1E-18 132.3 12.1 107 129-241 130-236 (322)
32 TIGR00080 pimt protein-L-isoas 99.5 1.2E-13 2.7E-18 122.2 13.9 107 125-241 72-178 (215)
33 COG2227 UbiG 2-polyprenyl-3-me 99.5 2.5E-14 5.5E-19 127.9 8.7 105 129-241 58-162 (243)
34 PRK00377 cbiT cobalt-precorrin 99.5 1.9E-13 4.2E-18 119.5 13.8 120 115-240 23-145 (198)
35 PF13649 Methyltransf_25: Meth 99.5 4.4E-14 9.6E-19 110.2 8.7 97 134-234 1-101 (101)
36 PRK00216 ubiE ubiquinone/menaq 99.5 3.3E-13 7.1E-18 119.4 15.3 151 127-282 48-239 (239)
37 PRK13255 thiopurine S-methyltr 99.5 2.5E-13 5.4E-18 121.2 14.4 128 94-238 11-153 (218)
38 PF03848 TehB: Tellurite resis 99.5 4.3E-13 9.3E-18 117.4 15.2 107 127-241 27-134 (192)
39 PRK14103 trans-aconitate 2-met 99.5 3E-13 6.4E-18 122.6 12.8 106 122-240 21-126 (255)
40 PRK08287 cobalt-precorrin-6Y C 99.5 5.9E-13 1.3E-17 115.2 13.6 105 126-240 27-131 (187)
41 PF05175 MTS: Methyltransferas 99.5 3.8E-13 8.3E-18 115.1 11.9 106 130-240 31-140 (170)
42 COG2242 CobL Precorrin-6B meth 99.5 9.4E-13 2E-17 114.0 13.7 119 113-240 15-135 (187)
43 PLN02336 phosphoethanolamine N 99.5 5E-13 1.1E-17 131.3 13.6 115 119-240 254-369 (475)
44 PRK11805 N5-glutamine S-adenos 99.5 1.1E-12 2.4E-17 122.7 15.1 109 131-243 134-266 (307)
45 COG2230 Cfa Cyclopropane fatty 99.5 5.9E-13 1.3E-17 122.4 12.8 111 123-240 65-176 (283)
46 PRK00121 trmB tRNA (guanine-N( 99.5 3.2E-13 6.9E-18 118.8 10.7 108 129-240 39-156 (202)
47 PF13659 Methyltransf_26: Meth 99.5 2.1E-13 4.6E-18 108.2 8.6 106 131-240 1-115 (117)
48 TIGR02716 C20_methyl_CrtF C-20 99.5 1.2E-12 2.7E-17 121.6 14.6 108 127-240 146-254 (306)
49 TIGR03438 probable methyltrans 99.5 2.8E-12 6.1E-17 119.4 16.7 164 116-281 43-242 (301)
50 PRK13256 thiopurine S-methyltr 99.5 1.4E-12 3.1E-17 116.8 13.9 138 89-240 12-163 (226)
51 smart00828 PKS_MT Methyltransf 99.4 8E-13 1.7E-17 116.9 12.0 138 132-274 1-151 (224)
52 PRK04457 spermidine synthase; 99.4 5.7E-13 1.2E-17 121.9 10.5 147 129-281 65-216 (262)
53 PRK07402 precorrin-6B methylas 99.4 1.8E-12 4E-17 113.0 13.3 118 115-241 23-143 (196)
54 COG2518 Pcm Protein-L-isoaspar 99.4 1.2E-12 2.6E-17 115.5 12.0 125 110-247 52-176 (209)
55 PRK10258 biotin biosynthesis p 99.4 1.5E-12 3.3E-17 117.4 12.9 100 129-240 41-140 (251)
56 PF01135 PCMT: Protein-L-isoas 99.4 4.8E-13 1.1E-17 118.6 9.4 113 119-241 61-173 (209)
57 TIGR00091 tRNA (guanine-N(7)-) 99.4 1E-12 2.2E-17 114.8 11.2 109 129-241 15-133 (194)
58 TIGR03533 L3_gln_methyl protei 99.4 5.1E-12 1.1E-16 116.9 16.4 110 129-242 120-253 (284)
59 PRK01683 trans-aconitate 2-met 99.4 1.9E-12 4.1E-17 117.1 12.6 107 123-240 24-130 (258)
60 KOG1540 Ubiquinone biosynthesi 99.4 1.9E-12 4.2E-17 116.6 12.2 111 125-240 95-214 (296)
61 TIGR00536 hemK_fam HemK family 99.4 2.1E-12 4.6E-17 119.2 12.9 108 132-243 116-247 (284)
62 PRK08317 hypothetical protein; 99.4 3.7E-12 8E-17 112.1 13.6 111 125-240 14-124 (241)
63 COG4106 Tam Trans-aconitate me 99.4 6.9E-13 1.5E-17 116.9 8.7 116 114-240 14-129 (257)
64 PRK06922 hypothetical protein; 99.4 4.5E-12 9.9E-17 127.7 15.5 107 129-240 417-537 (677)
65 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 7.2E-12 1.6E-16 109.6 14.6 106 128-240 37-143 (223)
66 PRK01544 bifunctional N5-gluta 99.4 8E-12 1.7E-16 124.2 16.3 151 85-241 59-270 (506)
67 KOG1270 Methyltransferases [Co 99.4 4.8E-13 1E-17 120.9 6.9 102 131-240 90-195 (282)
68 PRK00312 pcm protein-L-isoaspa 99.4 5.9E-12 1.3E-16 111.0 13.3 103 126-241 74-176 (212)
69 COG2890 HemK Methylase of poly 99.4 2.4E-11 5.3E-16 112.3 17.6 104 133-242 113-240 (280)
70 TIGR02021 BchM-ChlM magnesium 99.4 1.2E-11 2.6E-16 109.4 14.9 104 128-239 53-157 (219)
71 PRK11088 rrmA 23S rRNA methylt 99.4 7E-12 1.5E-16 114.9 13.6 128 122-265 77-216 (272)
72 PF05724 TPMT: Thiopurine S-me 99.4 4.1E-12 8.8E-17 113.4 11.4 137 89-239 6-154 (218)
73 PF08242 Methyltransf_12: Meth 99.4 3.1E-13 6.8E-18 104.6 3.2 97 135-236 1-99 (99)
74 PRK00517 prmA ribosomal protei 99.4 1.1E-11 2.4E-16 112.4 13.7 111 113-240 103-213 (250)
75 TIGR00406 prmA ribosomal prote 99.4 8.7E-12 1.9E-16 115.4 13.2 118 112-240 142-259 (288)
76 PRK13943 protein-L-isoaspartat 99.4 1.5E-11 3.2E-16 115.8 14.8 106 125-240 75-180 (322)
77 PRK04266 fibrillarin; Provisio 99.4 2.4E-11 5.1E-16 109.1 15.3 146 126-281 68-225 (226)
78 smart00138 MeTrc Methyltransfe 99.3 7.4E-12 1.6E-16 114.7 11.8 116 129-244 98-246 (264)
79 PF05401 NodS: Nodulation prot 99.3 1.5E-11 3.2E-16 107.5 12.3 135 91-241 10-147 (201)
80 TIGR02072 BioC biotin biosynth 99.3 1.5E-11 3.2E-16 108.5 12.6 103 129-240 33-135 (240)
81 TIGR00537 hemK_rel_arch HemK-r 99.3 2E-11 4.3E-16 104.9 12.9 103 129-240 18-140 (179)
82 PRK15068 tRNA mo(5)U34 methylt 99.3 3.2E-11 7E-16 113.5 15.4 107 128-240 120-226 (322)
83 COG2519 GCD14 tRNA(1-methylade 99.3 1.5E-11 3.2E-16 111.0 12.4 149 125-282 89-252 (256)
84 PRK11705 cyclopropane fatty ac 99.3 1.8E-11 3.9E-16 117.8 13.7 106 124-240 161-267 (383)
85 PRK07580 Mg-protoporphyrin IX 99.3 4.8E-11 1E-15 105.6 15.2 104 127-238 60-164 (230)
86 TIGR00446 nop2p NOL1/NOP2/sun 99.3 2.6E-11 5.7E-16 110.9 13.9 111 127-240 68-199 (264)
87 PRK14966 unknown domain/N5-glu 99.3 2.8E-11 6.2E-16 116.9 14.4 141 97-242 208-383 (423)
88 PRK15001 SAM-dependent 23S rib 99.3 3.1E-11 6.6E-16 115.8 14.2 107 130-240 228-340 (378)
89 TIGR03587 Pse_Me-ase pseudamin 99.3 2.2E-11 4.9E-16 107.5 12.3 99 128-238 41-140 (204)
90 KOG1663 O-methyltransferase [S 99.3 1.5E-11 3.2E-16 109.3 10.6 107 129-241 72-184 (237)
91 PRK14967 putative methyltransf 99.3 4E-11 8.8E-16 106.7 13.3 108 125-239 31-158 (223)
92 PRK14903 16S rRNA methyltransf 99.3 4.3E-11 9.3E-16 116.8 14.1 111 127-240 234-366 (431)
93 TIGR03704 PrmC_rel_meth putati 99.3 7.2E-11 1.6E-15 107.4 14.6 137 130-278 86-249 (251)
94 TIGR03534 RF_mod_PrmC protein- 99.3 7.4E-11 1.6E-15 105.6 14.6 108 129-241 86-218 (251)
95 PLN02490 MPBQ/MSBQ methyltrans 99.3 2E-11 4.3E-16 115.6 11.3 104 129-240 112-215 (340)
96 PRK14121 tRNA (guanine-N(7)-)- 99.3 4.5E-11 9.8E-16 114.7 13.7 111 127-241 119-236 (390)
97 TIGR00452 methyltransferase, p 99.3 5.3E-11 1.2E-15 111.6 13.3 106 127-240 118-225 (314)
98 TIGR00563 rsmB ribosomal RNA s 99.3 6.7E-11 1.5E-15 115.2 14.3 111 127-240 235-368 (426)
99 PRK14904 16S rRNA methyltransf 99.3 7.9E-11 1.7E-15 115.3 14.4 110 127-240 247-377 (445)
100 PRK14968 putative methyltransf 99.3 1.1E-10 2.4E-15 99.7 13.6 106 129-240 22-148 (188)
101 PRK10901 16S rRNA methyltransf 99.3 1.2E-10 2.5E-15 113.6 15.4 109 127-240 241-372 (427)
102 PRK09489 rsmC 16S ribosomal RN 99.3 9.3E-11 2E-15 111.3 14.1 105 129-240 195-303 (342)
103 PRK00811 spermidine synthase; 99.3 6.6E-11 1.4E-15 109.4 12.7 111 129-241 75-192 (283)
104 TIGR01177 conserved hypothetic 99.3 1.3E-10 2.9E-15 109.4 15.0 110 127-242 179-296 (329)
105 COG4123 Predicted O-methyltran 99.3 5.3E-11 1.2E-15 107.7 11.5 110 128-240 42-170 (248)
106 PRK14902 16S rRNA methyltransf 99.3 6.5E-11 1.4E-15 115.8 13.0 111 127-240 247-379 (444)
107 COG2264 PrmA Ribosomal protein 99.2 7.4E-11 1.6E-15 109.4 12.5 143 113-269 146-290 (300)
108 PRK14901 16S rRNA methyltransf 99.2 7.6E-11 1.6E-15 115.1 13.2 111 127-240 249-384 (434)
109 KOG1271 Methyltransferases [Ge 99.2 1.1E-10 2.3E-15 100.8 12.0 108 131-241 68-182 (227)
110 cd02440 AdoMet_MTases S-adenos 99.2 1.3E-10 2.8E-15 87.0 11.2 102 133-239 1-103 (107)
111 PF13489 Methyltransf_23: Meth 99.2 9.4E-11 2E-15 97.2 11.3 98 128-242 20-117 (161)
112 PF06325 PrmA: Ribosomal prote 99.2 6.7E-11 1.5E-15 110.0 11.5 116 111-240 143-259 (295)
113 PLN02366 spermidine synthase 99.2 1.1E-10 2.4E-15 109.3 12.8 110 129-240 90-206 (308)
114 PRK05134 bifunctional 3-demeth 99.2 1.9E-10 4.2E-15 102.4 13.7 105 128-240 46-151 (233)
115 PLN02336 phosphoethanolamine N 99.2 1.4E-10 3E-15 114.0 13.4 104 129-240 36-142 (475)
116 PF08704 GCD14: tRNA methyltra 99.2 9.2E-11 2E-15 106.5 10.3 109 125-241 35-147 (247)
117 PRK09328 N5-glutamine S-adenos 99.2 3.7E-10 8.1E-15 102.7 14.2 109 128-241 106-239 (275)
118 PRK15128 23S rRNA m(5)C1962 me 99.2 2.3E-10 5.1E-15 110.5 13.2 109 129-241 219-340 (396)
119 PRK05785 hypothetical protein; 99.2 1.3E-10 2.7E-15 104.2 10.2 91 130-234 51-141 (226)
120 PLN02585 magnesium protoporphy 99.2 5.8E-10 1.3E-14 104.7 15.0 102 129-238 143-248 (315)
121 PRK01581 speE spermidine synth 99.2 2.2E-10 4.7E-15 109.0 12.2 112 128-241 148-269 (374)
122 PRK11783 rlmL 23S rRNA m(2)G24 99.2 1.8E-10 4E-15 118.6 11.7 108 129-241 537-657 (702)
123 TIGR01983 UbiG ubiquinone bios 99.2 3.9E-10 8.6E-15 99.4 11.9 105 129-240 44-149 (224)
124 smart00650 rADc Ribosomal RNA 99.1 1.5E-09 3.3E-14 92.5 15.0 145 125-281 8-167 (169)
125 KOG4300 Predicted methyltransf 99.1 1.8E-10 4E-15 101.1 8.8 106 129-240 75-182 (252)
126 PRK06202 hypothetical protein; 99.1 6E-10 1.3E-14 99.5 12.3 104 129-240 59-166 (232)
127 PTZ00146 fibrillarin; Provisio 99.1 2E-09 4.2E-14 99.8 14.9 187 86-281 86-286 (293)
128 PRK11188 rrmJ 23S rRNA methylt 99.1 1.3E-09 2.9E-14 96.4 12.5 124 128-271 49-193 (209)
129 TIGR00417 speE spermidine synt 99.1 1E-09 2.3E-14 100.6 12.0 111 129-241 71-187 (270)
130 COG2813 RsmC 16S RNA G1207 met 99.1 2E-09 4.3E-14 99.7 13.0 106 129-240 157-266 (300)
131 TIGR00438 rrmJ cell division p 99.1 8.2E-10 1.8E-14 95.6 9.9 99 128-240 30-146 (188)
132 PLN02672 methionine S-methyltr 99.1 1.4E-09 3E-14 115.6 13.3 111 131-243 119-281 (1082)
133 PRK10909 rsmD 16S rRNA m(2)G96 99.0 3.2E-09 6.9E-14 93.6 12.4 106 129-241 52-160 (199)
134 PRK03612 spermidine synthase; 99.0 2.5E-09 5.4E-14 106.8 12.1 110 129-241 296-416 (521)
135 PLN02823 spermine synthase 99.0 2.3E-09 5.1E-14 101.5 11.2 110 129-240 102-220 (336)
136 PRK13168 rumA 23S rRNA m(5)U19 99.0 1.3E-08 2.7E-13 99.8 16.3 102 127-240 294-400 (443)
137 PRK03522 rumB 23S rRNA methylu 99.0 9.5E-09 2.1E-13 96.3 14.7 100 129-239 172-273 (315)
138 PF01564 Spermine_synth: Sperm 99.0 2.1E-09 4.6E-14 97.6 9.2 110 129-240 75-191 (246)
139 COG0421 SpeE Spermidine syntha 98.9 8E-09 1.7E-13 95.6 10.7 110 129-240 75-190 (282)
140 PF00891 Methyltransf_2: O-met 98.9 2E-08 4.3E-13 90.1 12.3 100 127-240 97-199 (241)
141 TIGR00095 RNA methyltransferas 98.9 2.4E-08 5.1E-13 87.2 11.8 107 129-242 48-161 (189)
142 TIGR00479 rumA 23S rRNA (uraci 98.9 2.4E-08 5.1E-13 97.4 12.8 100 128-238 290-394 (431)
143 PLN02232 ubiquinone biosynthes 98.9 8E-09 1.7E-13 87.6 8.2 79 160-240 1-81 (160)
144 PRK11933 yebU rRNA (cytosine-C 98.9 2.9E-08 6.2E-13 97.9 12.9 111 127-240 110-242 (470)
145 COG2263 Predicted RNA methylas 98.9 4.5E-08 9.7E-13 85.1 12.4 78 126-212 41-118 (198)
146 TIGR02085 meth_trns_rumB 23S r 98.8 3.6E-08 7.9E-13 94.6 13.0 101 129-240 232-334 (374)
147 PF08003 Methyltransf_9: Prote 98.8 2.7E-08 5.9E-13 92.3 11.4 106 128-240 113-219 (315)
148 PRK11727 23S rRNA mA1618 methy 98.8 4.6E-08 1E-12 92.1 13.1 111 97-210 78-197 (321)
149 COG1092 Predicted SAM-dependen 98.8 3.4E-08 7.4E-13 95.1 11.1 111 129-243 216-339 (393)
150 PF09445 Methyltransf_15: RNA 98.8 1.4E-08 3E-13 86.8 7.4 76 132-212 1-79 (163)
151 KOG2904 Predicted methyltransf 98.8 1.1E-07 2.5E-12 86.8 13.2 112 127-241 145-286 (328)
152 PF02390 Methyltransf_4: Putat 98.8 4.2E-08 9.1E-13 86.1 10.0 106 132-241 19-134 (195)
153 TIGR02081 metW methionine bios 98.8 5E-08 1.1E-12 84.9 10.2 91 129-232 12-104 (194)
154 PF02527 GidB: rRNA small subu 98.8 7.7E-08 1.7E-12 83.8 11.1 100 132-241 50-149 (184)
155 PF13578 Methyltransf_24: Meth 98.7 5.1E-09 1.1E-13 82.2 3.0 101 135-240 1-105 (106)
156 PF02475 Met_10: Met-10+ like- 98.7 5.9E-08 1.3E-12 85.6 9.5 110 117-236 89-198 (200)
157 PHA03411 putative methyltransf 98.7 7E-08 1.5E-12 88.9 10.0 102 129-240 63-183 (279)
158 PRK00050 16S rRNA m(4)C1402 me 98.7 1.1E-07 2.4E-12 88.5 11.3 83 125-212 14-100 (296)
159 COG0144 Sun tRNA and rRNA cyto 98.7 2.9E-07 6.4E-12 87.9 13.3 112 127-240 153-288 (355)
160 PF01739 CheR: CheR methyltran 98.7 1.9E-07 4.2E-12 82.1 10.8 118 128-245 29-180 (196)
161 KOG1661 Protein-L-isoaspartate 98.7 2.5E-07 5.4E-12 81.6 11.3 112 128-247 80-201 (237)
162 PTZ00338 dimethyladenosine tra 98.7 3.4E-07 7.4E-12 85.3 12.8 79 125-210 31-109 (294)
163 PF06080 DUF938: Protein of un 98.7 3.5E-07 7.6E-12 80.7 12.1 120 118-240 13-141 (204)
164 TIGR00755 ksgA dimethyladenosi 98.7 1.1E-06 2.5E-11 79.7 15.7 90 110-209 9-101 (253)
165 COG4976 Predicted methyltransf 98.6 3.3E-08 7.2E-13 88.2 5.0 147 123-282 118-286 (287)
166 PF10294 Methyltransf_16: Puta 98.6 2.5E-07 5.3E-12 79.6 10.3 110 128-241 43-157 (173)
167 PF03602 Cons_hypoth95: Conser 98.6 1.3E-07 2.7E-12 82.4 8.6 109 129-243 41-156 (183)
168 PHA03412 putative methyltransf 98.6 2.8E-07 6.1E-12 83.2 10.8 99 130-238 49-160 (241)
169 COG0220 Predicted S-adenosylme 98.6 3.4E-07 7.3E-12 82.3 11.2 107 131-241 49-165 (227)
170 PRK00536 speE spermidine synth 98.6 3.8E-07 8.2E-12 83.7 11.7 100 129-241 71-172 (262)
171 PRK14896 ksgA 16S ribosomal RN 98.6 4.6E-07 1E-11 82.6 12.2 75 126-210 25-99 (258)
172 PF05185 PRMT5: PRMT5 arginine 98.6 1.7E-07 3.8E-12 92.0 9.8 126 107-238 161-295 (448)
173 PRK04338 N(2),N(2)-dimethylgua 98.6 2.9E-07 6.2E-12 88.8 10.8 101 131-240 58-158 (382)
174 KOG2361 Predicted methyltransf 98.6 2E-07 4.3E-12 83.8 8.5 119 117-240 58-183 (264)
175 PF10672 Methyltrans_SAM: S-ad 98.6 2.9E-07 6.3E-12 85.4 10.0 108 129-241 122-239 (286)
176 PF01170 UPF0020: Putative RNA 98.6 7.7E-07 1.7E-11 77.0 11.9 122 125-247 23-158 (179)
177 PRK04148 hypothetical protein; 98.6 8.9E-07 1.9E-11 73.3 11.5 94 129-240 15-109 (134)
178 PF07021 MetW: Methionine bios 98.6 4.1E-07 8.9E-12 79.5 9.9 88 128-229 11-101 (193)
179 KOG2899 Predicted methyltransf 98.6 3.7E-07 8.1E-12 82.1 9.8 108 129-240 57-209 (288)
180 PF03291 Pox_MCEL: mRNA cappin 98.6 3.8E-07 8.3E-12 86.3 10.5 110 130-242 62-188 (331)
181 PRK05031 tRNA (uracil-5-)-meth 98.6 5.8E-07 1.3E-11 86.0 11.8 96 131-239 207-319 (362)
182 PRK10611 chemotaxis methyltran 98.5 2.7E-07 5.9E-12 85.6 8.8 115 130-244 115-266 (287)
183 TIGR02143 trmA_only tRNA (urac 98.5 1E-06 2.3E-11 84.0 12.4 96 131-239 198-310 (353)
184 COG2521 Predicted archaeal met 98.5 9.2E-08 2E-12 85.7 4.6 137 127-269 131-279 (287)
185 PF12147 Methyltransf_20: Puta 98.5 3.8E-06 8.2E-11 77.7 15.2 122 114-240 121-249 (311)
186 COG0357 GidB Predicted S-adeno 98.5 5.6E-07 1.2E-11 80.2 9.0 99 131-238 68-166 (215)
187 KOG3420 Predicted RNA methylas 98.5 1.5E-07 3.3E-12 78.7 4.9 81 126-212 44-124 (185)
188 KOG1541 Predicted protein carb 98.5 6.7E-07 1.4E-11 79.6 9.1 101 129-240 49-160 (270)
189 PRK00274 ksgA 16S ribosomal RN 98.5 6.8E-07 1.5E-11 82.2 9.5 76 125-209 37-112 (272)
190 COG0742 N6-adenine-specific me 98.5 2.1E-06 4.5E-11 74.8 11.9 110 129-242 42-156 (187)
191 KOG1269 SAM-dependent methyltr 98.5 3.9E-07 8.4E-12 87.2 8.0 162 67-240 54-215 (364)
192 COG1352 CheR Methylase of chem 98.4 3.4E-06 7.4E-11 77.6 13.0 115 130-244 96-245 (268)
193 COG1041 Predicted DNA modifica 98.4 3.2E-06 6.8E-11 80.0 12.0 108 128-241 195-311 (347)
194 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.4 4.2E-06 9.1E-11 77.6 11.3 111 127-240 82-219 (283)
195 KOG3010 Methyltransferase [Gen 98.3 1.1E-06 2.3E-11 79.2 6.8 103 132-241 35-138 (261)
196 KOG1975 mRNA cap methyltransfe 98.3 4.1E-06 8.9E-11 78.3 10.8 110 129-241 116-238 (389)
197 TIGR00478 tly hemolysin TlyA f 98.3 2.2E-06 4.7E-11 77.2 8.5 90 129-238 74-169 (228)
198 KOG3191 Predicted N6-DNA-methy 98.3 1.3E-05 2.7E-10 69.6 12.1 107 129-240 42-168 (209)
199 PF04816 DUF633: Family of unk 98.3 5.1E-06 1.1E-10 73.6 9.7 111 134-250 1-114 (205)
200 TIGR00308 TRM1 tRNA(guanine-26 98.3 6.1E-06 1.3E-10 79.4 10.7 101 131-240 45-147 (374)
201 COG3963 Phospholipid N-methylt 98.2 8.9E-06 1.9E-10 69.7 10.0 111 123-241 41-157 (194)
202 PF09243 Rsm22: Mitochondrial 98.2 1.7E-05 3.6E-10 73.2 12.7 108 128-240 31-140 (274)
203 PF07091 FmrO: Ribosomal RNA m 98.2 6E-06 1.3E-10 74.9 9.3 153 37-212 27-181 (251)
204 COG2520 Predicted methyltransf 98.2 1.1E-05 2.4E-10 76.5 11.4 111 119-240 178-289 (341)
205 COG2265 TrmA SAM-dependent met 98.2 2E-05 4.4E-10 77.1 13.3 99 127-236 290-392 (432)
206 COG0116 Predicted N6-adenine-s 98.2 6.5E-06 1.4E-10 78.8 9.4 120 121-241 182-345 (381)
207 KOG2915 tRNA(1-methyladenosine 98.2 1.7E-05 3.8E-10 72.6 11.5 104 127-238 102-207 (314)
208 PRK11783 rlmL 23S rRNA m(2)G24 98.2 2.3E-05 4.9E-10 81.2 13.5 84 157-241 257-348 (702)
209 PRK01544 bifunctional N5-gluta 98.2 1.2E-05 2.6E-10 80.3 11.1 109 129-241 346-463 (506)
210 TIGR00006 S-adenosyl-methyltra 98.2 2E-05 4.3E-10 73.8 11.8 82 126-212 16-102 (305)
211 KOG1499 Protein arginine N-met 98.2 1E-05 2.2E-10 76.3 9.5 103 129-237 59-164 (346)
212 PF08123 DOT1: Histone methyla 98.1 1.2E-05 2.5E-10 71.3 9.1 112 122-238 34-156 (205)
213 PF05958 tRNA_U5-meth_tr: tRNA 98.1 9.7E-06 2.1E-10 77.4 9.1 81 129-215 195-292 (352)
214 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.1 2.5E-05 5.4E-10 71.5 11.1 150 127-281 53-256 (256)
215 KOG2730 Methylase [General fun 98.1 1.9E-06 4.2E-11 76.6 3.7 106 130-241 94-203 (263)
216 PRK09424 pntA NAD(P) transhydr 98.1 1.4E-05 3E-10 79.7 10.1 102 128-241 162-286 (509)
217 TIGR03439 methyl_EasF probable 98.1 0.00016 3.4E-09 68.3 16.6 166 115-282 55-264 (319)
218 KOG1500 Protein arginine N-met 98.1 3.9E-05 8.4E-10 72.3 11.3 111 121-237 168-279 (517)
219 PF05891 Methyltransf_PK: AdoM 98.0 2.2E-05 4.8E-10 69.9 8.4 106 130-240 55-161 (218)
220 COG0500 SmtA SAM-dependent met 98.0 0.00018 3.8E-09 55.3 12.1 102 134-241 52-156 (257)
221 PF05971 Methyltransf_10: Prot 98.0 3E-05 6.5E-10 72.3 9.0 108 97-210 69-185 (299)
222 PF01728 FtsJ: FtsJ-like methy 98.0 2.3E-05 5E-10 67.2 7.5 121 130-270 23-166 (181)
223 PF06962 rRNA_methylase: Putat 98.0 3.2E-05 6.9E-10 64.5 7.8 85 158-243 1-95 (140)
224 PF04672 Methyltransf_19: S-ad 98.0 3.2E-05 7E-10 71.0 8.6 108 130-240 68-190 (267)
225 PRK09880 L-idonate 5-dehydroge 98.0 4.9E-05 1.1E-09 71.3 10.2 104 123-240 162-266 (343)
226 COG4262 Predicted spermidine s 98.0 8.3E-05 1.8E-09 70.8 11.4 110 129-241 288-408 (508)
227 COG1063 Tdh Threonine dehydrog 97.9 3.8E-05 8.3E-10 73.0 8.5 102 129-243 167-272 (350)
228 COG1064 AdhP Zn-dependent alco 97.9 4.6E-05 9.9E-10 72.2 8.5 103 122-242 158-261 (339)
229 TIGR00561 pntA NAD(P) transhyd 97.9 5E-05 1.1E-09 75.7 8.8 99 129-239 162-283 (511)
230 COG0030 KsgA Dimethyladenosine 97.9 9.7E-05 2.1E-09 67.6 9.9 77 125-209 25-102 (259)
231 KOG0820 Ribosomal RNA adenine 97.8 0.00014 3.1E-09 66.7 9.4 81 121-208 49-129 (315)
232 PRK10742 putative methyltransf 97.8 0.00015 3.2E-09 66.0 9.4 82 127-212 83-174 (250)
233 KOG0024 Sorbitol dehydrogenase 97.7 0.00021 4.6E-09 67.1 10.2 114 124-253 163-285 (354)
234 TIGR02987 met_A_Alw26 type II 97.7 0.00013 2.9E-09 72.9 9.4 78 130-210 31-120 (524)
235 COG2384 Predicted SAM-dependen 97.7 0.00075 1.6E-08 60.2 12.8 104 129-238 15-118 (226)
236 COG0275 Predicted S-adenosylme 97.7 0.00048 1E-08 64.1 11.9 83 126-212 19-106 (314)
237 COG4076 Predicted RNA methylas 97.7 0.00015 3.2E-09 63.5 7.9 142 131-280 33-187 (252)
238 COG0686 Ald Alanine dehydrogen 97.7 0.00014 2.9E-09 68.1 7.9 103 129-240 166-268 (371)
239 TIGR01444 fkbM_fam methyltrans 97.7 0.00018 3.9E-09 58.8 7.9 59 133-195 1-59 (143)
240 PF01861 DUF43: Protein of unk 97.7 0.0014 3E-08 59.4 13.8 111 123-241 37-150 (243)
241 PF04989 CmcI: Cephalosporin h 97.7 8E-05 1.7E-09 66.0 5.7 106 129-240 31-147 (206)
242 PRK11760 putative 23S rRNA C24 97.6 0.00027 5.8E-09 67.1 9.3 87 129-233 210-296 (357)
243 COG3897 Predicted methyltransf 97.6 0.00019 4.1E-09 63.0 7.5 103 129-241 78-180 (218)
244 PF02737 3HCDH_N: 3-hydroxyacy 97.6 0.00032 7E-09 60.7 8.8 98 133-240 1-114 (180)
245 PF05148 Methyltransf_8: Hypot 97.6 0.00015 3.3E-09 64.3 6.4 88 129-241 71-159 (219)
246 PF02384 N6_Mtase: N-6 DNA Met 97.6 0.00046 1E-08 64.1 9.6 115 127-241 43-184 (311)
247 cd00401 AdoHcyase S-adenosyl-L 97.5 0.00053 1.1E-08 66.9 10.0 108 110-240 179-289 (413)
248 PF01795 Methyltransf_5: MraW 97.5 0.00023 4.9E-09 66.8 7.1 81 127-212 17-103 (310)
249 COG0293 FtsJ 23S rRNA methylas 97.5 0.0022 4.9E-08 56.8 12.2 128 128-275 43-191 (205)
250 PF07279 DUF1442: Protein of u 97.4 0.0024 5.2E-08 56.9 12.1 107 129-241 40-150 (218)
251 TIGR03366 HpnZ_proposed putati 97.4 0.00082 1.8E-08 61.3 9.6 102 124-240 114-218 (280)
252 cd08237 ribitol-5-phosphate_DH 97.4 0.00085 1.9E-08 63.1 9.7 96 128-240 161-256 (341)
253 PRK07066 3-hydroxybutyryl-CoA 97.4 0.00092 2E-08 63.2 9.9 101 131-240 7-119 (321)
254 cd08230 glucose_DH Glucose deh 97.4 0.00068 1.5E-08 63.8 9.0 97 128-240 170-269 (355)
255 PF05219 DREV: DREV methyltran 97.4 0.00096 2.1E-08 61.0 9.1 95 130-240 94-188 (265)
256 KOG2187 tRNA uracil-5-methyltr 97.4 0.0011 2.4E-08 65.5 10.0 103 127-240 380-489 (534)
257 PF07942 N2227: N2227-like pro 97.3 0.0027 5.8E-08 58.6 11.6 104 129-237 55-199 (270)
258 PF13679 Methyltransf_32: Meth 97.3 0.00081 1.8E-08 55.7 7.5 78 128-207 23-104 (141)
259 TIGR02822 adh_fam_2 zinc-bindi 97.3 0.0024 5.2E-08 59.8 11.4 96 124-240 159-254 (329)
260 KOG3178 Hydroxyindole-O-methyl 97.3 0.0057 1.2E-07 58.0 13.6 194 34-240 51-275 (342)
261 PRK07819 3-hydroxybutyryl-CoA 97.3 0.0027 5.9E-08 58.8 11.4 99 132-240 6-121 (286)
262 PF03721 UDPG_MGDP_dh_N: UDP-g 97.3 0.00049 1.1E-08 59.9 6.0 102 132-241 1-121 (185)
263 PRK05808 3-hydroxybutyryl-CoA 97.3 0.0021 4.5E-08 59.1 10.4 99 132-239 4-117 (282)
264 KOG1709 Guanidinoacetate methy 97.3 0.0026 5.6E-08 56.9 10.3 109 128-243 99-209 (271)
265 KOG1122 tRNA and rRNA cytosine 97.2 0.0026 5.5E-08 61.7 10.6 110 128-240 239-371 (460)
266 PF00398 RrnaAD: Ribosomal RNA 97.2 0.0019 4.2E-08 59.0 9.2 105 124-240 24-134 (262)
267 PRK06035 3-hydroxyacyl-CoA deh 97.2 0.0022 4.7E-08 59.3 9.6 98 132-238 4-119 (291)
268 cd08239 THR_DH_like L-threonin 97.2 0.0016 3.5E-08 60.6 8.6 104 123-240 156-262 (339)
269 TIGR00518 alaDH alanine dehydr 97.2 0.00084 1.8E-08 64.6 6.7 102 129-240 165-267 (370)
270 PRK07530 3-hydroxybutyryl-CoA 97.2 0.0041 8.8E-08 57.4 10.9 98 132-238 5-117 (292)
271 KOG3201 Uncharacterized conser 97.1 0.00024 5.2E-09 60.7 2.2 130 129-264 28-163 (201)
272 cd08281 liver_ADH_like1 Zinc-d 97.1 0.0017 3.6E-08 61.7 8.1 101 126-240 187-290 (371)
273 TIGR01202 bchC 2-desacetyl-2-h 97.1 0.0018 3.8E-08 60.1 7.8 88 129-240 143-231 (308)
274 PF02005 TRM: N2,N2-dimethylgu 97.1 0.0025 5.4E-08 61.6 8.8 106 130-242 49-156 (377)
275 TIGR03201 dearomat_had 6-hydro 97.1 0.0028 6E-08 59.6 8.8 102 125-240 161-272 (349)
276 PF01269 Fibrillarin: Fibrilla 97.1 0.0096 2.1E-07 53.4 11.7 154 113-280 56-226 (229)
277 KOG2352 Predicted spermine/spe 97.0 0.0045 9.7E-08 61.0 10.1 126 104-240 26-161 (482)
278 PLN02740 Alcohol dehydrogenase 97.0 0.004 8.6E-08 59.5 9.5 101 126-240 194-300 (381)
279 KOG1562 Spermidine synthase [A 97.0 0.0034 7.3E-08 58.5 8.4 165 96-271 95-288 (337)
280 TIGR03451 mycoS_dep_FDH mycoth 97.0 0.0028 6.2E-08 59.7 8.2 100 127-240 173-276 (358)
281 PRK08293 3-hydroxybutyryl-CoA 97.0 0.006 1.3E-07 56.3 10.2 100 132-239 4-119 (287)
282 PRK09260 3-hydroxybutyryl-CoA 97.0 0.004 8.6E-08 57.4 9.0 100 132-240 2-117 (288)
283 KOG3045 Predicted RNA methylas 96.9 0.0034 7.5E-08 57.5 7.5 86 129-241 179-265 (325)
284 TIGR02441 fa_ox_alpha_mit fatt 96.9 0.0068 1.5E-07 63.3 10.6 100 131-240 335-450 (737)
285 PLN02545 3-hydroxybutyryl-CoA 96.9 0.0088 1.9E-07 55.3 10.2 98 132-238 5-117 (295)
286 PLN02586 probable cinnamyl alc 96.8 0.006 1.3E-07 57.9 9.2 98 128-240 181-278 (360)
287 PRK10309 galactitol-1-phosphat 96.8 0.007 1.5E-07 56.6 8.9 100 127-240 157-260 (347)
288 PRK05476 S-adenosyl-L-homocyst 96.7 0.0095 2.1E-07 58.4 9.9 109 109-240 188-299 (425)
289 PLN02514 cinnamyl-alcohol dehy 96.7 0.014 3.1E-07 55.1 10.8 97 129-240 179-275 (357)
290 TIGR02279 PaaC-3OHAcCoADH 3-hy 96.7 0.0044 9.5E-08 62.0 7.6 102 129-240 3-120 (503)
291 PLN03154 putative allyl alcoho 96.7 0.01 2.2E-07 56.1 9.6 100 127-240 155-258 (348)
292 PRK11154 fadJ multifunctional 96.7 0.011 2.5E-07 61.4 10.6 101 131-240 309-425 (708)
293 TIGR02818 adh_III_F_hyde S-(hy 96.7 0.016 3.5E-07 55.0 10.9 99 126-240 181-287 (368)
294 PRK06130 3-hydroxybutyryl-CoA 96.7 0.013 2.8E-07 54.5 10.0 100 131-238 4-113 (311)
295 cd08296 CAD_like Cinnamyl alco 96.7 0.012 2.6E-07 54.7 9.7 101 126-240 159-259 (333)
296 PLN02178 cinnamyl-alcohol dehy 96.7 0.0096 2.1E-07 57.0 9.2 96 129-240 177-273 (375)
297 TIGR00936 ahcY adenosylhomocys 96.7 0.011 2.5E-07 57.5 9.7 89 129-240 193-282 (406)
298 PRK08268 3-hydroxy-acyl-CoA de 96.7 0.0047 1E-07 61.9 7.2 101 130-240 6-122 (507)
299 KOG1331 Predicted methyltransf 96.6 0.0028 6.1E-08 58.6 5.0 96 129-238 44-141 (293)
300 PRK07502 cyclohexadienyl dehyd 96.6 0.013 2.9E-07 54.4 9.7 91 131-238 6-98 (307)
301 PF04445 SAM_MT: Putative SAM- 96.6 0.0067 1.5E-07 54.8 7.3 82 127-212 70-161 (234)
302 PRK08306 dipicolinate synthase 96.6 0.01 2.2E-07 55.4 8.7 91 129-239 150-240 (296)
303 PF01262 AlaDh_PNT_C: Alanine 96.6 0.00076 1.6E-08 57.5 1.1 103 129-240 18-139 (168)
304 PRK11730 fadB multifunctional 96.6 0.016 3.5E-07 60.4 10.8 99 132-240 314-428 (715)
305 TIGR02437 FadB fatty oxidation 96.6 0.013 2.9E-07 61.0 10.1 101 130-240 312-428 (714)
306 cd08283 FDH_like_1 Glutathione 96.5 0.011 2.3E-07 56.6 8.6 108 127-241 181-307 (386)
307 cd08254 hydroxyacyl_CoA_DH 6-h 96.5 0.016 3.4E-07 53.3 9.3 99 128-240 163-263 (338)
308 cd08238 sorbose_phosphate_red 96.5 0.026 5.7E-07 54.5 11.2 103 127-239 172-287 (410)
309 cd08300 alcohol_DH_class_III c 96.5 0.02 4.4E-07 54.2 10.2 101 126-240 182-288 (368)
310 KOG2940 Predicted methyltransf 96.5 0.0036 7.8E-08 56.5 4.6 103 129-239 71-173 (325)
311 cd05188 MDR Medium chain reduc 96.5 0.013 2.8E-07 51.6 8.2 99 129-241 133-233 (271)
312 TIGR02819 fdhA_non_GSH formald 96.5 0.028 6.1E-07 54.2 11.0 106 125-240 180-299 (393)
313 TIGR02825 B4_12hDH leukotriene 96.5 0.021 4.6E-07 52.8 9.8 99 127-240 135-237 (325)
314 PLN02827 Alcohol dehydrogenase 96.4 0.025 5.5E-07 54.0 10.5 100 127-240 190-295 (378)
315 PHA01634 hypothetical protein 96.4 0.019 4.1E-07 47.4 7.9 73 129-210 27-100 (156)
316 cd08285 NADP_ADH NADP(H)-depen 96.4 0.018 4E-07 53.8 9.1 102 125-240 161-266 (351)
317 cd08233 butanediol_DH_like (2R 96.4 0.018 3.8E-07 53.9 8.9 102 126-241 168-273 (351)
318 PRK07417 arogenate dehydrogena 96.4 0.023 4.9E-07 52.3 9.3 87 132-237 1-88 (279)
319 cd08301 alcohol_DH_plants Plan 96.4 0.036 7.7E-07 52.4 10.9 101 126-240 183-289 (369)
320 cd08277 liver_alcohol_DH_like 96.4 0.021 4.5E-07 54.1 9.3 99 127-240 181-286 (365)
321 COG5459 Predicted rRNA methyla 96.3 0.011 2.3E-07 56.4 7.0 110 127-240 110-225 (484)
322 PLN02494 adenosylhomocysteinas 96.3 0.032 6.9E-07 55.3 10.6 146 68-240 185-341 (477)
323 PRK07531 bifunctional 3-hydrox 96.3 0.029 6.2E-07 56.0 10.0 102 132-243 5-118 (495)
324 cd08255 2-desacetyl-2-hydroxye 96.2 0.045 9.8E-07 49.1 10.4 97 126-240 93-190 (277)
325 COG1062 AdhC Zn-dependent alco 96.2 0.034 7.4E-07 52.9 9.7 98 127-240 182-285 (366)
326 PRK11064 wecC UDP-N-acetyl-D-m 96.2 0.055 1.2E-06 52.8 11.5 95 132-241 4-120 (415)
327 PRK15182 Vi polysaccharide bio 96.2 0.062 1.3E-06 52.7 12.0 101 129-241 4-121 (425)
328 PRK06129 3-hydroxyacyl-CoA deh 96.2 0.062 1.3E-06 50.1 11.5 100 132-241 3-118 (308)
329 cd08293 PTGR2 Prostaglandin re 96.2 0.018 3.8E-07 53.5 7.8 94 132-239 156-253 (345)
330 cd08232 idonate-5-DH L-idonate 96.2 0.034 7.3E-07 51.5 9.5 99 127-239 162-261 (339)
331 PRK15057 UDP-glucose 6-dehydro 96.2 0.061 1.3E-06 52.1 11.6 103 132-241 1-118 (388)
332 PF02254 TrkA_N: TrkA-N domain 96.2 0.052 1.1E-06 42.6 9.2 93 134-241 1-97 (116)
333 cd08295 double_bond_reductase_ 96.1 0.04 8.6E-07 51.3 9.9 100 127-240 148-251 (338)
334 PRK09422 ethanol-active dehydr 96.1 0.058 1.3E-06 49.9 10.8 102 126-240 158-261 (338)
335 COG1889 NOP1 Fibrillarin-like 96.1 0.12 2.6E-06 45.9 12.0 149 113-271 59-220 (231)
336 PRK00066 ldh L-lactate dehydro 96.1 0.084 1.8E-06 49.7 12.0 107 129-240 4-122 (315)
337 cd08294 leukotriene_B4_DH_like 96.1 0.033 7.2E-07 51.1 9.0 98 127-239 140-240 (329)
338 TIGR02440 FadJ fatty oxidation 96.1 0.037 8E-07 57.6 10.2 100 132-240 305-420 (699)
339 COG1250 FadB 3-hydroxyacyl-CoA 96.1 0.026 5.5E-07 53.1 8.1 101 131-240 3-118 (307)
340 cd08242 MDR_like Medium chain 96.1 0.058 1.3E-06 49.5 10.4 95 125-239 150-244 (319)
341 COG0287 TyrA Prephenate dehydr 96.0 0.039 8.5E-07 51.2 9.1 93 131-237 3-95 (279)
342 PRK10083 putative oxidoreducta 96.0 0.042 9.1E-07 50.9 9.4 102 126-240 156-259 (339)
343 COG1189 Predicted rRNA methyla 96.0 0.072 1.6E-06 48.3 10.4 98 128-240 77-178 (245)
344 KOG2352 Predicted spermine/spe 96.0 0.0079 1.7E-07 59.3 4.3 108 129-240 294-416 (482)
345 PRK06522 2-dehydropantoate 2-r 95.9 0.061 1.3E-06 49.3 9.9 96 132-239 1-99 (304)
346 cd05213 NAD_bind_Glutamyl_tRNA 95.9 0.045 9.7E-07 51.3 9.0 98 129-241 176-273 (311)
347 cd08245 CAD Cinnamyl alcohol d 95.9 0.12 2.6E-06 47.6 11.7 98 127-240 159-256 (330)
348 PLN02353 probable UDP-glucose 95.9 0.11 2.3E-06 51.8 11.9 105 132-241 2-128 (473)
349 PF03141 Methyltransf_29: Puta 95.9 0.0047 1E-07 61.1 2.3 101 129-241 116-220 (506)
350 cd08231 MDR_TM0436_like Hypoth 95.8 0.065 1.4E-06 50.3 9.8 97 129-240 176-280 (361)
351 PRK08507 prephenate dehydrogen 95.8 0.059 1.3E-06 49.3 9.1 86 133-237 2-88 (275)
352 COG3129 Predicted SAM-dependen 95.8 0.046 9.9E-07 49.5 7.9 122 84-212 33-163 (292)
353 cd05292 LDH_2 A subgroup of L- 95.7 0.12 2.6E-06 48.4 10.9 101 132-240 1-116 (308)
354 PRK12921 2-dehydropantoate 2-r 95.7 0.046 1E-06 50.3 8.0 94 132-238 1-100 (305)
355 cd05297 GH4_alpha_glucosidase_ 95.7 0.012 2.6E-07 57.6 4.3 100 133-235 2-115 (423)
356 PRK08229 2-dehydropantoate 2-r 95.7 0.043 9.3E-07 51.5 7.9 100 132-244 3-110 (341)
357 PTZ00117 malate dehydrogenase; 95.7 0.088 1.9E-06 49.6 9.9 102 130-239 4-121 (319)
358 PF00107 ADH_zinc_N: Zinc-bind 95.6 0.0065 1.4E-07 48.5 1.9 85 142-243 2-92 (130)
359 cd08298 CAD2 Cinnamyl alcohol 95.5 0.17 3.8E-06 46.5 11.3 94 126-240 163-256 (329)
360 PLN02256 arogenate dehydrogena 95.5 0.12 2.5E-06 48.6 10.1 100 112-236 23-123 (304)
361 PTZ00082 L-lactate dehydrogena 95.5 0.12 2.7E-06 48.7 10.4 104 130-240 5-128 (321)
362 KOG4058 Uncharacterized conser 95.5 0.088 1.9E-06 44.7 8.3 112 113-237 54-169 (199)
363 cd05285 sorbitol_DH Sorbitol d 95.5 0.077 1.7E-06 49.4 9.0 101 126-240 158-265 (343)
364 PRK03562 glutathione-regulated 95.5 0.12 2.6E-06 53.0 11.1 96 131-241 400-499 (621)
365 cd08291 ETR_like_1 2-enoyl thi 95.5 0.044 9.5E-07 50.6 7.2 96 130-240 142-242 (324)
366 PTZ00075 Adenosylhomocysteinas 95.5 0.03 6.4E-07 55.6 6.3 88 129-239 252-340 (476)
367 cd05283 CAD1 Cinnamyl alcohol 95.5 0.14 3E-06 47.7 10.5 100 124-240 163-263 (337)
368 cd08286 FDH_like_ADH2 formalde 95.4 0.089 1.9E-06 48.9 9.2 99 127-240 163-266 (345)
369 cd05293 LDH_1 A subgroup of L- 95.4 0.27 5.8E-06 46.3 12.3 105 130-240 2-120 (312)
370 PRK08655 prephenate dehydrogen 95.4 0.085 1.9E-06 51.9 9.3 91 132-240 1-92 (437)
371 PRK08324 short chain dehydroge 95.4 0.32 7E-06 50.4 13.9 105 130-240 421-557 (681)
372 COG1867 TRM1 N2,N2-dimethylgua 95.4 0.073 1.6E-06 51.0 8.3 101 131-240 53-154 (380)
373 TIGR03026 NDP-sugDHase nucleot 95.4 0.17 3.7E-06 49.1 11.1 100 132-240 1-120 (411)
374 TIGR00872 gnd_rel 6-phosphoglu 95.4 0.082 1.8E-06 49.1 8.5 90 132-238 1-91 (298)
375 KOG2198 tRNA cytosine-5-methyl 95.3 0.25 5.4E-06 47.4 11.6 112 127-240 152-296 (375)
376 cd05291 HicDH_like L-2-hydroxy 95.3 0.26 5.5E-06 46.0 11.6 102 132-240 1-117 (306)
377 PRK01747 mnmC bifunctional tRN 95.3 0.057 1.2E-06 55.6 7.8 111 129-240 56-206 (662)
378 cd05298 GH4_GlvA_pagL_like Gly 95.3 0.25 5.4E-06 48.8 11.9 77 132-214 1-86 (437)
379 PTZ00142 6-phosphogluconate de 95.2 0.1 2.2E-06 51.9 9.1 97 132-238 2-99 (470)
380 PRK05708 2-dehydropantoate 2-r 95.2 0.11 2.4E-06 48.4 9.0 95 132-238 3-102 (305)
381 PRK01438 murD UDP-N-acetylmura 95.2 0.085 1.8E-06 52.0 8.5 74 129-212 14-88 (480)
382 PRK05562 precorrin-2 dehydroge 95.2 0.1 2.2E-06 46.9 8.1 102 129-251 23-128 (223)
383 COG0604 Qor NADPH:quinone redu 95.2 0.12 2.5E-06 48.9 9.0 100 127-241 139-242 (326)
384 PRK12771 putative glutamate sy 95.1 0.039 8.4E-07 55.8 6.1 36 128-165 134-169 (564)
385 TIGR01470 cysG_Nterm siroheme 95.1 0.2 4.3E-06 44.3 9.9 104 130-251 8-112 (205)
386 PF00056 Ldh_1_N: lactate/mala 95.1 0.37 8.1E-06 39.9 10.9 104 132-240 1-118 (141)
387 PRK12480 D-lactate dehydrogena 95.1 0.07 1.5E-06 50.6 7.4 93 129-243 144-236 (330)
388 PRK03659 glutathione-regulated 95.1 0.18 3.8E-06 51.6 10.7 97 131-242 400-500 (601)
389 PRK00094 gpsA NAD(P)H-dependen 95.0 0.14 3E-06 47.5 9.0 98 132-240 2-105 (325)
390 cd05278 FDH_like Formaldehyde 95.0 0.096 2.1E-06 48.5 7.9 98 128-239 165-266 (347)
391 PRK14106 murD UDP-N-acetylmura 95.0 0.27 5.8E-06 47.9 11.3 75 130-213 4-79 (450)
392 PF05711 TylF: Macrocin-O-meth 95.0 0.093 2E-06 47.9 7.5 110 129-242 73-214 (248)
393 PRK15076 alpha-galactosidase; 95.0 0.029 6.2E-07 55.2 4.5 79 132-213 2-86 (431)
394 PRK06940 short chain dehydroge 95.0 0.29 6.3E-06 44.4 10.8 101 132-238 3-123 (275)
395 TIGR00692 tdh L-threonine 3-de 94.9 0.11 2.3E-06 48.4 8.0 99 128-240 159-261 (340)
396 PRK10669 putative cation:proto 94.9 0.22 4.7E-06 50.4 10.7 95 132-241 418-516 (558)
397 cd05279 Zn_ADH1 Liver alcohol 94.9 0.14 3E-06 48.4 8.8 98 127-240 180-285 (365)
398 cd05197 GH4_glycoside_hydrolas 94.9 0.26 5.6E-06 48.4 10.8 77 132-214 1-86 (425)
399 PF03446 NAD_binding_2: NAD bi 94.8 0.084 1.8E-06 44.6 6.4 90 132-240 2-94 (163)
400 COG0569 TrkA K+ transport syst 94.8 0.31 6.7E-06 43.6 10.4 85 132-229 1-89 (225)
401 PLN02702 L-idonate 5-dehydroge 94.8 0.15 3.3E-06 48.0 8.8 101 126-240 177-285 (364)
402 PRK02705 murD UDP-N-acetylmura 94.8 0.28 6E-06 48.0 10.7 76 133-215 2-81 (459)
403 cd01339 LDH-like_MDH L-lactate 94.7 0.17 3.7E-06 47.0 8.8 97 134-238 1-113 (300)
404 cd08274 MDR9 Medium chain dehy 94.7 0.37 8E-06 44.6 11.0 95 126-239 173-272 (350)
405 PRK09496 trkA potassium transp 94.7 0.37 8E-06 46.8 11.4 98 129-240 229-330 (453)
406 cd08234 threonine_DH_like L-th 94.7 0.33 7.1E-06 44.7 10.6 97 127-240 156-257 (334)
407 PF01488 Shikimate_DH: Shikima 94.7 0.064 1.4E-06 44.0 5.3 79 128-215 9-88 (135)
408 PF02826 2-Hacid_dh_C: D-isome 94.7 0.024 5.2E-07 48.7 2.7 96 129-243 34-129 (178)
409 PRK06249 2-dehydropantoate 2-r 94.7 0.13 2.8E-06 48.1 7.8 97 129-238 3-104 (313)
410 PRK06223 malate dehydrogenase; 94.7 0.24 5.1E-06 46.0 9.5 102 132-240 3-119 (307)
411 KOG0023 Alcohol dehydrogenase, 94.6 0.12 2.6E-06 48.9 7.4 107 121-240 172-279 (360)
412 cd05288 PGDH Prostaglandin deh 94.6 0.24 5.3E-06 45.4 9.5 99 128-240 143-244 (329)
413 PRK05786 fabG 3-ketoacyl-(acyl 94.6 0.72 1.6E-05 40.2 12.1 105 130-240 4-135 (238)
414 PRK09496 trkA potassium transp 94.6 0.39 8.4E-06 46.7 11.3 95 132-240 1-99 (453)
415 cd08278 benzyl_alcohol_DH Benz 94.6 0.1 2.2E-06 49.4 7.0 100 127-240 183-285 (365)
416 PRK06545 prephenate dehydrogen 94.6 0.15 3.2E-06 48.8 8.1 91 132-237 1-92 (359)
417 TIGR02354 thiF_fam2 thiamine b 94.6 0.61 1.3E-05 41.0 11.4 101 130-237 20-142 (200)
418 cd08236 sugar_DH NAD(P)-depend 94.5 0.2 4.3E-06 46.4 8.7 100 127-240 156-258 (343)
419 cd01338 MDH_choloroplast_like 94.5 0.22 4.7E-06 47.2 9.0 107 130-240 1-128 (322)
420 cd08265 Zn_ADH3 Alcohol dehydr 94.5 0.15 3.3E-06 48.6 8.0 100 127-240 200-307 (384)
421 COG1004 Ugd Predicted UDP-gluc 94.5 0.25 5.4E-06 48.0 9.3 101 132-240 1-120 (414)
422 PRK03369 murD UDP-N-acetylmura 94.5 0.11 2.3E-06 51.8 7.1 74 129-215 10-83 (488)
423 COG1748 LYS9 Saccharopine dehy 94.5 0.17 3.8E-06 49.0 8.3 72 132-211 2-77 (389)
424 cd08261 Zn_ADH7 Alcohol dehydr 94.5 0.21 4.5E-06 46.2 8.7 99 127-239 156-257 (337)
425 PRK05442 malate dehydrogenase; 94.4 0.25 5.5E-06 46.8 9.3 107 129-240 2-130 (326)
426 cd05289 MDR_like_2 alcohol deh 94.4 0.4 8.6E-06 42.8 10.1 94 128-240 142-238 (309)
427 cd08284 FDH_like_2 Glutathione 94.4 0.64 1.4E-05 43.0 11.7 99 127-240 164-266 (344)
428 PRK13771 putative alcohol dehy 94.3 0.43 9.2E-06 44.0 10.4 96 127-240 159-255 (334)
429 PLN02688 pyrroline-5-carboxyla 94.3 0.22 4.8E-06 45.0 8.3 86 132-237 1-92 (266)
430 cd08264 Zn_ADH_like2 Alcohol d 94.3 0.22 4.8E-06 45.7 8.5 94 126-240 158-253 (325)
431 cd05290 LDH_3 A subgroup of L- 94.3 0.45 9.8E-06 44.7 10.5 103 133-240 1-119 (307)
432 COG2084 MmsB 3-hydroxyisobutyr 94.3 0.16 3.4E-06 47.4 7.3 91 132-240 1-95 (286)
433 TIGR01759 MalateDH-SF1 malate 94.3 0.44 9.5E-06 45.1 10.4 107 130-240 2-129 (323)
434 cd05296 GH4_P_beta_glucosidase 94.3 0.5 1.1E-05 46.4 11.1 75 132-213 1-86 (419)
435 KOG1501 Arginine N-methyltrans 94.2 0.099 2.1E-06 51.3 6.0 96 132-234 68-168 (636)
436 COG4798 Predicted methyltransf 94.2 0.17 3.7E-06 44.8 7.0 114 122-240 40-166 (238)
437 PRK09599 6-phosphogluconate de 94.2 0.3 6.5E-06 45.3 9.2 92 132-239 1-93 (301)
438 TIGR02853 spore_dpaA dipicolin 94.2 0.19 4.1E-06 46.7 7.8 89 129-237 149-237 (287)
439 cd08299 alcohol_DH_class_I_II_ 94.2 0.33 7.1E-06 46.2 9.6 98 127-240 187-292 (373)
440 COG1486 CelF Alpha-galactosida 94.2 0.55 1.2E-05 46.3 11.2 79 131-214 3-89 (442)
441 PF02056 Glyco_hydro_4: Family 94.2 0.18 3.9E-06 44.0 7.1 75 133-213 1-84 (183)
442 cd08282 PFDH_like Pseudomonas 94.2 0.26 5.6E-06 46.8 8.8 106 125-239 171-284 (375)
443 PRK12769 putative oxidoreducta 94.2 0.059 1.3E-06 55.5 4.7 74 130-211 326-421 (654)
444 PRK12491 pyrroline-5-carboxyla 94.1 0.3 6.5E-06 45.0 8.9 93 132-241 3-97 (272)
445 cd08248 RTN4I1 Human Reticulon 94.1 0.22 4.8E-06 46.1 8.1 95 130-240 162-257 (350)
446 PRK14806 bifunctional cyclohex 94.1 0.28 6E-06 51.2 9.6 90 132-238 4-95 (735)
447 KOG1253 tRNA methyltransferase 94.1 0.042 9.1E-07 54.4 3.3 105 129-241 108-217 (525)
448 COG4301 Uncharacterized conser 94.0 1.2 2.6E-05 41.0 12.1 112 128-240 76-193 (321)
449 PRK11559 garR tartronate semia 93.9 0.28 6E-06 45.1 8.3 88 132-238 3-94 (296)
450 cd08240 6_hydroxyhexanoate_dh_ 93.9 0.32 7E-06 45.3 8.8 95 129-240 174-274 (350)
451 TIGR01915 npdG NADPH-dependent 93.9 0.84 1.8E-05 40.3 11.0 101 132-244 1-104 (219)
452 PLN02928 oxidoreductase family 93.9 0.1 2.2E-06 49.8 5.4 104 129-238 157-260 (347)
453 cd08244 MDR_enoyl_red Possible 93.8 0.4 8.7E-06 43.6 9.1 99 127-240 139-241 (324)
454 PF03807 F420_oxidored: NADP o 93.8 0.45 9.7E-06 36.0 8.0 87 133-237 1-91 (96)
455 KOG2798 Putative trehalase [Ca 93.8 2.1 4.6E-05 40.6 13.7 104 129-238 149-294 (369)
456 cd08267 MDR1 Medium chain dehy 93.8 0.59 1.3E-05 42.2 10.2 99 128-240 141-240 (319)
457 PRK12809 putative oxidoreducta 93.8 0.093 2E-06 54.0 5.4 75 130-211 309-404 (639)
458 KOG0822 Protein kinase inhibit 93.8 0.26 5.7E-06 49.4 8.1 108 131-241 368-479 (649)
459 PRK13243 glyoxylate reductase; 93.8 0.15 3.2E-06 48.4 6.3 91 129-238 148-238 (333)
460 PRK12490 6-phosphogluconate de 93.8 0.39 8.5E-06 44.6 9.0 91 133-239 2-93 (299)
461 PLN02712 arogenate dehydrogena 93.7 0.34 7.4E-06 50.3 9.3 90 129-237 50-140 (667)
462 cd08246 crotonyl_coA_red croto 93.7 0.73 1.6E-05 43.9 11.0 46 127-174 190-236 (393)
463 cd00650 LDH_MDH_like NAD-depen 93.7 0.29 6.2E-06 44.6 7.8 104 134-240 1-119 (263)
464 PRK08217 fabG 3-ketoacyl-(acyl 93.7 0.4 8.7E-06 42.0 8.5 76 130-211 4-91 (253)
465 COG0677 WecC UDP-N-acetyl-D-ma 93.6 0.41 8.9E-06 46.6 8.9 100 130-241 8-129 (436)
466 cd05286 QOR2 Quinone oxidoredu 93.6 0.44 9.6E-06 42.6 8.9 96 127-240 133-235 (320)
467 PF01210 NAD_Gly3P_dh_N: NAD-d 93.6 0.19 4.1E-06 42.2 6.0 101 133-244 1-106 (157)
468 PRK11199 tyrA bifunctional cho 93.6 0.93 2E-05 43.7 11.5 76 130-238 97-173 (374)
469 PLN02712 arogenate dehydrogena 93.6 2 4.3E-05 44.7 14.5 89 129-237 367-457 (667)
470 TIGR02356 adenyl_thiF thiazole 93.6 0.47 1E-05 41.7 8.7 93 130-229 20-135 (202)
471 PLN02602 lactate dehydrogenase 93.5 1.2 2.7E-05 42.6 12.0 103 132-240 38-154 (350)
472 PF02558 ApbA: Ketopantoate re 93.5 0.1 2.3E-06 42.8 4.2 95 134-239 1-100 (151)
473 cd08279 Zn_ADH_class_III Class 93.4 0.36 7.7E-06 45.5 8.3 100 127-240 179-282 (363)
474 PF11899 DUF3419: Protein of u 93.4 0.2 4.3E-06 48.6 6.5 115 163-281 256-379 (380)
475 TIGR01318 gltD_gamma_fam gluta 93.4 0.13 2.9E-06 50.8 5.5 35 130-166 140-174 (467)
476 COG0078 ArgF Ornithine carbamo 93.4 0.56 1.2E-05 44.0 9.1 101 127-236 149-266 (310)
477 PRK08818 prephenate dehydrogen 93.4 0.29 6.3E-06 47.2 7.6 78 131-237 4-85 (370)
478 COG1255 Uncharacterized protei 93.4 0.76 1.6E-05 37.3 8.7 89 130-240 13-102 (129)
479 PF02153 PDH: Prephenate dehyd 93.4 0.34 7.4E-06 44.1 7.7 74 148-238 4-77 (258)
480 cd08260 Zn_ADH6 Alcohol dehydr 93.3 0.33 7.1E-06 45.1 7.7 100 127-240 162-264 (345)
481 cd08243 quinone_oxidoreductase 93.3 0.65 1.4E-05 41.9 9.5 97 128-240 140-238 (320)
482 cd08287 FDH_like_ADH3 formalde 93.3 0.46 1E-05 44.0 8.7 101 126-240 164-268 (345)
483 cd01065 NAD_bind_Shikimate_DH 93.3 0.59 1.3E-05 38.3 8.5 74 129-212 17-91 (155)
484 TIGR01771 L-LDH-NAD L-lactate 93.3 0.76 1.6E-05 43.0 10.1 99 137-240 2-113 (299)
485 PRK14620 NAD(P)H-dependent gly 93.3 0.69 1.5E-05 43.3 9.8 102 132-244 1-109 (326)
486 COG3288 PntA NAD/NADP transhyd 93.2 0.084 1.8E-06 49.6 3.5 107 127-239 160-280 (356)
487 PRK07814 short chain dehydroge 93.2 1.7 3.6E-05 38.9 11.9 77 130-211 9-96 (263)
488 PRK07231 fabG 3-ketoacyl-(acyl 93.2 1.2 2.7E-05 38.9 10.9 77 130-212 4-91 (251)
489 PF05430 Methyltransf_30: S-ad 93.2 0.051 1.1E-06 44.4 1.8 77 185-268 32-112 (124)
490 KOG2793 Putative N2,N2-dimethy 93.2 0.66 1.4E-05 42.4 9.2 106 130-240 86-199 (248)
491 PF13241 NAD_binding_7: Putati 93.2 0.4 8.7E-06 37.4 6.8 64 129-210 5-68 (103)
492 PRK06718 precorrin-2 dehydroge 93.1 0.54 1.2E-05 41.4 8.4 70 129-210 8-78 (202)
493 PRK00141 murD UDP-N-acetylmura 93.1 0.32 7E-06 48.1 7.7 74 129-214 13-86 (473)
494 PRK15469 ghrA bifunctional gly 93.1 0.35 7.6E-06 45.5 7.6 91 129-238 134-224 (312)
495 cd08289 MDR_yhfp_like Yhfp put 93.1 0.42 9.2E-06 43.7 8.0 95 130-241 146-244 (326)
496 cd08235 iditol_2_DH_like L-idi 93.1 0.47 1E-05 43.9 8.4 97 127-240 162-265 (343)
497 PRK09242 tropinone reductase; 93.1 2.3 4.9E-05 37.7 12.5 80 130-212 8-98 (257)
498 cd08270 MDR4 Medium chain dehy 93.0 1.7 3.6E-05 39.3 11.8 93 127-240 129-222 (305)
499 cd08292 ETR_like_2 2-enoyl thi 93.0 0.43 9.4E-06 43.5 8.0 96 127-240 136-238 (324)
500 PRK06124 gluconate 5-dehydroge 93.0 2.1 4.6E-05 37.8 12.2 79 129-212 9-98 (256)
No 1
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=100.00 E-value=1.2e-76 Score=541.36 Aligned_cols=269 Identities=51% Similarity=0.822 Sum_probs=168.2
Q ss_pred CcHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhccCCcccccccCchhHHHHHHHHHHHHHHhhHhhhHHHHHH
Q 036061 13 IPAELLIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPPSSIDIKTLPQEVQEMRESLIVLCGRAEGLLELEFATF 92 (284)
Q Consensus 13 ~~~~~~i~~i~~~~~~~~~l~~l~p~~~vn~lf~~Lv~lc~~~~~~~~~~~~~~~~~l~~~l~~l~~~~e~~lE~~~a~~ 92 (284)
.++|.+|++|+++|++|++|+||+|||+||+||++||++|++++++|+++|++++++++++||++|++||+.||.|||+.
T Consensus 3 ~~~~~lv~~i~~ly~~i~~L~sl~ps~~vn~lF~~Lv~~c~~~~~~dv~~L~~~i~~~~~~L~~~~~~ae~~LE~~~A~~ 82 (276)
T PF03059_consen 3 KEAEALVEKILSLYAQISKLESLSPSPEVNALFTQLVSLCIPPSPIDVTKLSPEIQSIRPSLRRLCSEAEGLLESHWAKR 82 (276)
T ss_dssp ---------------------------------------------------TGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred hcCCCCcccccccCCCcchhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHH
Q 036061 93 FAKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVA 172 (284)
Q Consensus 93 l~~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~A 172 (284)
+++.++||++|+.||||+||++|+++|++++.......|+||+||||||+|+|+++||+++.+++.|+|||+||+|++.|
T Consensus 83 l~~~~~p~~~L~~FpYy~nY~~L~~lE~~~l~~~~~~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a 162 (276)
T PF03059_consen 83 LLASDNPLDHLESFPYYPNYEKLVRLEYAALRIHAGDPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELA 162 (276)
T ss_dssp HHH-SSHHHHHHTSTTHHHHHHHHHHHHH-HTT--TT---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHH
T ss_pred HHhCCCHHHHHhcCCcHHHHHHHHHHHHHHHhhcCCcccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHH
Confidence 99999999999999999999999999999998777677899999999999999999998778899999999999999999
Q ss_pred HHHHH-hcCCCCCCeEEEEeccccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCccccccCcc
Q 036061 173 RQIVS-SDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPV 251 (284)
Q Consensus 173 r~~~~-~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~glr~~lYp~ 251 (284)
+++++ ..| ++++|+|+++|+.+...++.+||+||++++|||++++|.+++++++++|+||+++++|+++|+|+||||+
T Consensus 163 ~~lv~~~~~-L~~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp~ 241 (276)
T PF03059_consen 163 RRLVASDLG-LSKRMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLRSFLYPV 241 (276)
T ss_dssp HHHHH---H-H-SSEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS--
T ss_pred HHHHhhccc-ccCCeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhhHHHcCCC
Confidence 99999 567 7999999999999988888899999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCcEEEEEecCCcceeeeEEEEeec
Q 036061 252 VEKHDLLDFELLSVFHPTNEVINSVVLVRKP 282 (284)
Q Consensus 252 v~~~dl~gfe~~~~~hP~~~v~nsvi~~r~~ 282 (284)
++++|+.||+++.++||+++|||||||+||+
T Consensus 242 vd~~~l~gf~~~~~~hP~~~ViNSvv~~rk~ 272 (276)
T PF03059_consen 242 VDPEDLRGFEVLAVVHPTDEVINSVVFARKK 272 (276)
T ss_dssp --TGGGTTEEEEEEE---TT---EEEEE---
T ss_pred CChHHCCCeEEEEEECCCCCceeEEEEEEec
Confidence 9999999999999999999999999999995
No 2
>PLN03075 nicotianamine synthase; Provisional
Probab=100.00 E-value=4e-75 Score=536.04 Aligned_cols=274 Identities=60% Similarity=0.949 Sum_probs=262.6
Q ss_pred cCCCCcHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhccCCcccccccCchhHHHHHHHHHHHHHHhhHhhhHH
Q 036061 9 NESHIPAELLIARVMQIHASIANLESLKPSKQVNSLFTHLVKLCTPPSSIDIKTLPQEVQEMRESLIVLCGRAEGLLELE 88 (284)
Q Consensus 9 ~~~~~~~~~~i~~i~~~~~~~~~l~~l~p~~~vn~lf~~Lv~lc~~~~~~~~~~~~~~~~~l~~~l~~l~~~~e~~lE~~ 88 (284)
.+..+++|.+|++|+++|++|++|++|+||++||+||++||++|++++++|++++++++|++|++|+++|++||+.||.|
T Consensus 2 ~~~~~~~~~~i~~i~~~y~~i~~l~~l~ps~~v~~lf~~Lv~~c~~~~~~~~~~l~~~i~~~~~~l~~l~~~ae~~lE~~ 81 (296)
T PLN03075 2 EEMGCQEELLVEKICDLYAQISKLESLKPSKEVNTLFTQLVSTCIPPSSIDVTKLCEEIQEMRSKLIKLCGEAEGLLEAH 81 (296)
T ss_pred ccchhhHHHHHHHHHHHHHHHhhCcccCCchhHHHHHHHHHHHhCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCcccccccCCCcchhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHH
Q 036061 89 FATFFAKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAA 168 (284)
Q Consensus 89 ~a~~l~~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~a 168 (284)
||+.+++.++||++|+.||||+||++|.+.|...|..+...+|++|+||||||+|+|++++++++.++++|+|||+|+++
T Consensus 82 ~a~~i~~~~~p~~~l~~Fpy~~nY~~L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~a 161 (296)
T PLN03075 82 FSTILGSFDNPLDHLNLFPYYNNYLKLSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSA 161 (296)
T ss_pred HHHHHhcCCcHHHHhhcCCchHHHHHHHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHH
Confidence 99999999999999999999999999999999999888777999999999999999999999878999999999999999
Q ss_pred HHHHHHHHHh-cCCCCCCeEEEEeccccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCccccc
Q 036061 169 NDVARQIVSS-DIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAF 247 (284)
Q Consensus 169 i~~Ar~~~~~-~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~glr~~ 247 (284)
++.||+++++ .| +.++|+|+++|+.+....+++||+||++++++|++++|.++++++++.|+|||++++|++||+|+|
T Consensus 162 i~~Ar~~~~~~~g-L~~rV~F~~~Da~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~ 240 (296)
T PLN03075 162 NDVARRLVSSDPD-LSKRMFFHTADVMDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAF 240 (296)
T ss_pred HHHHHHHhhhccC-ccCCcEEEECchhhcccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecccchHhh
Confidence 9999999975 77 789999999999987655678999999988999999999999999999999999999999999999
Q ss_pred cCccCCCccCCCcEEEEEecCCcceeeeEEEEeecC
Q 036061 248 LYPVVEKHDLLDFELLSVFHPTNEVINSVVLVRKPL 283 (284)
Q Consensus 248 lYp~v~~~dl~gfe~~~~~hP~~~v~nsvi~~r~~~ 283 (284)
|||+|++++++|||++.++||+++|||||||+||+.
T Consensus 241 LYp~v~~~~~~gf~~~~~~~P~~~v~Nsvi~~r~~~ 276 (296)
T PLN03075 241 LYPVVDPCDLRGFEVLSVFHPTDEVINSVIIARKPG 276 (296)
T ss_pred cCCCCChhhCCCeEEEEEECCCCCceeeEEEEEeec
Confidence 999999999999999999999999999999999963
No 3
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.78 E-value=2.2e-18 Score=135.80 Aligned_cols=108 Identities=21% Similarity=0.365 Sum_probs=88.4
Q ss_pred CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061 130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA 209 (284)
Q Consensus 130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a 209 (284)
|+.+|||||||+ |..++.+++ ..++++|+++|+||++++.|++++.+.+ ..++|+|+++|+........+||+|+..
T Consensus 1 p~~~vLDlGcG~-G~~~~~l~~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 77 (112)
T PF12847_consen 1 PGGRVLDLGCGT-GRLSIALAR-LFPGARVVGVDISPEMLEIARERAAEEG-LSDRITFVQGDAEFDPDFLEPFDLVICS 77 (112)
T ss_dssp TTCEEEEETTTT-SHHHHHHHH-HHTTSEEEEEESSHHHHHHHHHHHHHTT-TTTTEEEEESCCHGGTTTSSCEEEEEEC
T ss_pred CCCEEEEEcCcC-CHHHHHHHh-cCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEECccccCcccCCCCCEEEEC
Confidence 578999999997 566777777 4699999999999999999999997777 6899999999991122233579999987
Q ss_pred c-cc-cC-ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 210 A-LV-GM-SKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 210 a-~v-~~-~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
. .. .+ +.+++.++++.+++.|+|||++++++
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 7 11 12 22678999999999999999999975
No 4
>PLN02244 tocopherol O-methyltransferase
Probab=99.70 E-value=4.3e-16 Score=147.35 Aligned_cols=164 Identities=13% Similarity=0.221 Sum_probs=120.7
Q ss_pred hHHHHHHHHHHHHHHhhHhhhHHHHHHhcCC--CCcccccccCCCcchhhhhhHHHHHHHHhcCC-----CCCCEEEEec
Q 036061 66 EVQEMRESLIVLCGRAEGLLELEFATFFAKT--PQPLNNLNLFPYYGNYVKLANLEYRILDENGV-----VNPKKVAFVG 138 (284)
Q Consensus 66 ~~~~l~~~l~~l~~~~e~~lE~~~a~~l~~~--~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~-----~~~~~VL~IG 138 (284)
...++.++++..+.+....+|..|.+.+..+ +.+. +.-+.-....++....+...+. .++.+|||||
T Consensus 53 ~~~~~~~~i~~~Yd~~~~~~e~~~g~~~h~g~~~~~~------~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiG 126 (340)
T PLN02244 53 ATADLKEGIAEFYDESSGVWEDVWGEHMHHGYYDPGA------SRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVG 126 (340)
T ss_pred chhhHHHHHHHHHccchHHHHHHhCCcceeeccCCCC------CcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEec
Confidence 4456778889999888888888887655432 1100 0001112222333334444454 6789999999
Q ss_pred cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecccccCChHH
Q 036061 139 SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSKEE 218 (284)
Q Consensus 139 sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~v~~~~~~ 218 (284)
||+ |..+..+++. .|++|+|||+|+.+++.|+++++..| +.++++|+++|+.+.+...+.||+|+..... .+..+
T Consensus 127 CG~-G~~~~~La~~--~g~~v~gvD~s~~~i~~a~~~~~~~g-~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~-~h~~d 201 (340)
T PLN02244 127 CGI-GGSSRYLARK--YGANVKGITLSPVQAARANALAAAQG-LSDKVSFQVADALNQPFEDGQFDLVWSMESG-EHMPD 201 (340)
T ss_pred CCC-CHHHHHHHHh--cCCEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEEcCcccCCCCCCCccEEEECCch-hccCC
Confidence 997 5566778872 48999999999999999999999988 6789999999999887766789999865432 22367
Q ss_pred HHHHHHHHHhhcCCCcEEEEEe
Q 036061 219 KVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 219 k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+.++++++.+.|||||.|++.+
T Consensus 202 ~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 202 KRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred HHHHHHHHHHHcCCCcEEEEEE
Confidence 8899999999999999998854
No 5
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.68 E-value=3.3e-16 Score=141.04 Aligned_cols=109 Identities=23% Similarity=0.309 Sum_probs=94.6
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI 206 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V 206 (284)
+..+|.+|||||||+ |.-|+.+++. .+.++|+++|+|+.|++.|++.+...| ... |+|++||++++|.+.+.||+|
T Consensus 48 ~~~~g~~vLDva~GT-Gd~a~~~~k~-~g~g~v~~~D~s~~ML~~a~~k~~~~~-~~~-i~fv~~dAe~LPf~D~sFD~v 123 (238)
T COG2226 48 GIKPGDKVLDVACGT-GDMALLLAKS-VGTGEVVGLDISESMLEVAREKLKKKG-VQN-VEFVVGDAENLPFPDNSFDAV 123 (238)
T ss_pred CCCCCCEEEEecCCc-cHHHHHHHHh-cCCceEEEEECCHHHHHHHHHHhhccC-ccc-eEEEEechhhCCCCCCccCEE
Confidence 445899999999997 7888999984 448999999999999999999999988 455 999999999999999999999
Q ss_pred EecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.++..+ -...++.++|++++|+|||||++++-.
T Consensus 124 t~~fgl-rnv~d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 124 TISFGL-RNVTDIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred Eeeehh-hcCCCHHHHHHHHHHhhcCCeEEEEEE
Confidence 877643 123688999999999999999888855
No 6
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.67 E-value=2e-16 Score=139.92 Aligned_cols=107 Identities=18% Similarity=0.371 Sum_probs=94.5
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc------CCC
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK------LGE 202 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~------~~~ 202 (284)
.++++||+|||| .|+|+++||+...++++|+++|+|++..+.|++++++.| ++++|+++.||+.++... .+.
T Consensus 44 ~~~k~vLEIGt~-~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag-~~~~I~~~~gda~~~l~~l~~~~~~~~ 121 (205)
T PF01596_consen 44 TRPKRVLEIGTF-TGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG-LDDRIEVIEGDALEVLPELANDGEEGQ 121 (205)
T ss_dssp HT-SEEEEESTT-TSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT-GGGGEEEEES-HHHHHHHHHHTTTTTS
T ss_pred cCCceEEEeccc-cccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC-CCCcEEEEEeccHhhHHHHHhccCCCc
Confidence 578999999999 599999999855568999999999999999999999999 799999999999876542 246
Q ss_pred ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
||+||+++.. .++.++++.+.+.|+|||++++.+.
T Consensus 122 fD~VFiDa~K----~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 122 FDFVFIDADK----RNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp EEEEEEESTG----GGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred eeEEEEcccc----cchhhHHHHHhhhccCCeEEEEccc
Confidence 9999999875 8899999999999999999999985
No 7
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.67 E-value=3.9e-16 Score=138.85 Aligned_cols=108 Identities=17% Similarity=0.371 Sum_probs=97.2
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE-ecccccccc--CCCcc
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVT-CDIMQVKEK--LGEYD 204 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~-~D~~~~~~~--~~~fD 204 (284)
..++++||+||++ +|+|++|||.....++++|+||++|++.+.|++++++.| ++++|+++. +|+.+.... .+.||
T Consensus 57 ~~~~k~iLEiGT~-~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag-~~~~i~~~~~gdal~~l~~~~~~~fD 134 (219)
T COG4122 57 LSGPKRILEIGTA-IGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG-VDDRIELLLGGDALDVLSRLLDGSFD 134 (219)
T ss_pred hcCCceEEEeecc-cCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC-CcceEEEEecCcHHHHHHhccCCCcc
Confidence 3689999999998 699999999954448899999999999999999999999 799999999 599887775 35799
Q ss_pred EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
+||+++.. .++.++++.+.+.|+|||++++.+.
T Consensus 135 liFIDadK----~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 135 LVFIDADK----ADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred EEEEeCCh----hhCHHHHHHHHHHhCCCcEEEEeec
Confidence 99999885 8889999999999999999999984
No 8
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.66 E-value=3.3e-15 Score=130.86 Aligned_cols=106 Identities=20% Similarity=0.314 Sum_probs=88.1
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI 206 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V 206 (284)
...++.+|||+|||+ |..+++||+ .|++|+++|+|+++++.|+++++..| + .++++.++|+.+.+.+ +.||+|
T Consensus 27 ~~~~~~~vLDiGcG~-G~~a~~La~---~g~~V~gvD~S~~~i~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~-~~fD~I 99 (197)
T PRK11207 27 KVVKPGKTLDLGCGN-GRNSLYLAA---NGFDVTAWDKNPMSIANLERIKAAEN-L-DNLHTAVVDLNNLTFD-GEYDFI 99 (197)
T ss_pred ccCCCCcEEEECCCC-CHHHHHHHH---CCCEEEEEeCCHHHHHHHHHHHHHcC-C-CcceEEecChhhCCcC-CCcCEE
Confidence 345678999999997 677899998 68999999999999999999999988 4 5699999998765543 469999
Q ss_pred Eecccc-cCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061 207 FLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVR 239 (284)
Q Consensus 207 ~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r 239 (284)
+..... ..+.++...+++.+.+.|+|||.+++.
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 100 LSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred EEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 966443 346678899999999999999986553
No 9
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.66 E-value=4.3e-16 Score=140.24 Aligned_cols=110 Identities=16% Similarity=0.216 Sum_probs=80.6
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI 206 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V 206 (284)
...++.+|||+|||+ |..+..++++..++++|+++|+|++|++.|++.+...|. .+|+|+++|+.+++.+.+.||+|
T Consensus 44 ~~~~g~~vLDv~~Gt-G~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~--~~i~~v~~da~~lp~~d~sfD~v 120 (233)
T PF01209_consen 44 GLRPGDRVLDVACGT-GDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL--QNIEFVQGDAEDLPFPDNSFDAV 120 (233)
T ss_dssp T--S--EEEEET-TT-SHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT----SEEEEE-BTTB--S-TT-EEEE
T ss_pred CCCCCCEEEEeCCCh-HHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC--CCeeEEEcCHHHhcCCCCceeEE
Confidence 457889999999998 577788888556789999999999999999999999883 49999999999999888889999
Q ss_pred EecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+++..+. +.+++.+.+++++|+|||||++++-+
T Consensus 121 ~~~fglr-n~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 121 TCSFGLR-NFPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp EEES-GG-G-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EHHhhHH-hhCCHHHHHHHHHHHcCCCeEEEEee
Confidence 9765441 23578889999999999999988755
No 10
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.66 E-value=2.1e-15 Score=136.45 Aligned_cols=127 Identities=16% Similarity=0.215 Sum_probs=99.5
Q ss_pred CCCcchhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhh-cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCC
Q 036061 106 FPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKN-HLKSTHFDNFDIDEAANDVARQIVSSDIEFEK 184 (284)
Q Consensus 106 fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~-~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~ 184 (284)
-|+|++...++..-. .....++.+|||||||+ |..+..+++. ..++++|+++|+|++|++.|++++...| ...
T Consensus 36 ~p~y~~~~~~~~~~~----~~~~~~~~~vLDlGcGt-G~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~-~~~ 109 (247)
T PRK15451 36 VPGYSNIISMIGMLA----ERFVQPGTQVYDLGCSL-GAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK-APT 109 (247)
T ss_pred CCChHHHHHHHHHHH----HHhCCCCCEEEEEcccC-CHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-CCC
Confidence 477777666654322 22246778999999997 5555666653 2588999999999999999999999888 677
Q ss_pred CeEEEEeccccccccCCCccEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 185 RMKFVTCDIMQVKEKLGEYDCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 185 ~I~f~~~D~~~~~~~~~~fD~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+++++++|+.+.+. ..||+|++...+ .++..++.++++++++.|+|||.+++.+
T Consensus 110 ~v~~~~~d~~~~~~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 110 PVDVIEGDIRDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred CeEEEeCChhhCCC--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 99999999987654 469998865433 4566778999999999999999999865
No 11
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.66 E-value=7.8e-16 Score=138.57 Aligned_cols=107 Identities=19% Similarity=0.308 Sum_probs=94.6
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc------CCC
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK------LGE 202 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~------~~~ 202 (284)
.++++||+||||+ |++++++|+...++++|+++|+|+++++.|++++++.| ++++|+++.||+.+.... .+.
T Consensus 67 ~~~~~vLEiGt~~-G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g-l~~~i~~~~gda~~~L~~l~~~~~~~~ 144 (234)
T PLN02781 67 MNAKNTLEIGVFT-GYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG-VDHKINFIQSDALSALDQLLNNDPKPE 144 (234)
T ss_pred hCCCEEEEecCcc-cHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEccHHHHHHHHHhCCCCCC
Confidence 5789999999995 89999999855567899999999999999999999999 789999999999876442 247
Q ss_pred ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
||+||+++.. +++.++++.+.+.|+|||++++.+.
T Consensus 145 fD~VfiDa~k----~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 145 FDFAFVDADK----PNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred CCEEEECCCH----HHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 9999998774 7888999999999999999998774
No 12
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.65 E-value=1.4e-15 Score=127.09 Aligned_cols=110 Identities=22% Similarity=0.355 Sum_probs=90.9
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CCccEEE
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~fD~V~ 207 (284)
+.+.+|||+|||+ |..+..|++...++.+|+|+|+|+++++.|++.+++.| +. +++|+++|+.+++..+ +.||+|+
T Consensus 2 ~~~~~iLDlGcG~-G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~-~~-ni~~~~~d~~~l~~~~~~~~D~I~ 78 (152)
T PF13847_consen 2 KSNKKILDLGCGT-GRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG-LD-NIEFIQGDIEDLPQELEEKFDIII 78 (152)
T ss_dssp TTTSEEEEET-TT-SHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT-ST-TEEEEESBTTCGCGCSSTTEEEEE
T ss_pred CCCCEEEEecCcC-cHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc-cc-ccceEEeehhccccccCCCeeEEE
Confidence 4678999999997 56678888546789999999999999999999999999 45 8999999999955222 6899999
Q ss_pred ecccccCChHHHHHHHHHHHhhcCCCcEEEEEecC
Q 036061 208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAK 242 (284)
Q Consensus 208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~ 242 (284)
..... ....+...+++.+.+.|++||.+++.+..
T Consensus 79 ~~~~l-~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVL-HHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTG-GGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCch-hhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 77543 22366778999999999999999998865
No 13
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.65 E-value=3.5e-15 Score=130.13 Aligned_cols=104 Identities=15% Similarity=0.164 Sum_probs=88.7
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
+++.+|||||||+ |..++.+|+ ..++++|+++|+|+++++.|+++++..| +. +++|+++|+.+... .+.||+|+.
T Consensus 44 ~~g~~VLDiGcGt-G~~al~la~-~~~~~~V~giD~s~~~l~~A~~~~~~~~-l~-~i~~~~~d~~~~~~-~~~fDlV~~ 118 (187)
T PRK00107 44 PGGERVLDVGSGA-GFPGIPLAI-ARPELKVTLVDSLGKKIAFLREVAAELG-LK-NVTVVHGRAEEFGQ-EEKFDVVTS 118 (187)
T ss_pred CCCCeEEEEcCCC-CHHHHHHHH-HCCCCeEEEEeCcHHHHHHHHHHHHHcC-CC-CEEEEeccHhhCCC-CCCccEEEE
Confidence 4589999999997 677788886 4688999999999999999999999999 54 49999999988665 457999997
Q ss_pred cccccCChHHHHHHHHHHHhhcCCCcEEEEEecC
Q 036061 209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAK 242 (284)
Q Consensus 209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~ 242 (284)
.+. .+...+++++++.|+|||.+++-.+.
T Consensus 119 ~~~-----~~~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 119 RAV-----ASLSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred ccc-----cCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 653 45678999999999999999987643
No 14
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.64 E-value=5.2e-15 Score=128.29 Aligned_cols=135 Identities=18% Similarity=0.161 Sum_probs=98.8
Q ss_pred CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061 130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA 209 (284)
Q Consensus 130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a 209 (284)
++.+|||||||+ |..++.+|. ..++++|+++|+|+++++.+++++++.| + ++++++++|+.++. ..+.||+|+..
T Consensus 42 ~~~~vLDiGcGt-G~~s~~la~-~~~~~~V~~iD~s~~~~~~a~~~~~~~~-~-~~i~~i~~d~~~~~-~~~~fD~I~s~ 116 (181)
T TIGR00138 42 DGKKVIDIGSGA-GFPGIPLAI-ARPELKLTLLESNHKKVAFLREVKAELG-L-NNVEIVNGRAEDFQ-HEEQFDVITSR 116 (181)
T ss_pred CCCeEEEecCCC-CccHHHHHH-HCCCCeEEEEeCcHHHHHHHHHHHHHhC-C-CCeEEEecchhhcc-ccCCccEEEeh
Confidence 478999999997 677788886 5678899999999999999999999998 4 46999999998864 34589999876
Q ss_pred ccccCChHHHHHHHHHHHhhcCCCcEEEEEecCccccccCccCCCccCCCcEEEEEecCCcceee
Q 036061 210 ALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKHDLLDFELLSVFHPTNEVIN 274 (284)
Q Consensus 210 a~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~glr~~lYp~v~~~dl~gfe~~~~~hP~~~v~n 274 (284)
+ + .+...+++.+.+.|+|||++++..+.....-+.-.++..-..||+.+.+---+.+.-|
T Consensus 117 ~-~----~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 176 (181)
T TIGR00138 117 A-L----ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPLTGPDRH 176 (181)
T ss_pred h-h----hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeeccccCCCceE
Confidence 6 3 3455788999999999999998754322111111112223367887766433334333
No 15
>PLN02476 O-methyltransferase
Probab=99.62 E-value=3.6e-15 Score=137.27 Aligned_cols=108 Identities=14% Similarity=0.168 Sum_probs=96.4
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC------C
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL------G 201 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~------~ 201 (284)
..++++||+||+| .|++++++|+...++++|+++|+|+++.+.|++++++.| ++++|+++.||+.+.+..+ +
T Consensus 116 ~~~ak~VLEIGT~-tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG-l~~~I~li~GdA~e~L~~l~~~~~~~ 193 (278)
T PLN02476 116 ILGAERCIEVGVY-TGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG-VSHKVNVKHGLAAESLKSMIQNGEGS 193 (278)
T ss_pred hcCCCeEEEecCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCHHHHHHHHHhcccCC
Confidence 3678999999999 589999999855568899999999999999999999999 7899999999998866433 4
Q ss_pred CccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 202 EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 202 ~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
.||+||+++.. .++.++++.+.+.|+|||++++.+.
T Consensus 194 ~FD~VFIDa~K----~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 194 SYDFAFVDADK----RMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred CCCEEEECCCH----HHHHHHHHHHHHhcCCCcEEEEecC
Confidence 79999999874 8899999999999999999999874
No 16
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.62 E-value=1.4e-14 Score=126.66 Aligned_cols=105 Identities=18% Similarity=0.251 Sum_probs=85.2
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI 206 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V 206 (284)
...++.+|||+|||+ |..++.+|+ .|++|+++|+|+.|++.+++.++..| + ++++.++|....+.+ +.||+|
T Consensus 27 ~~~~~~~vLDiGcG~-G~~a~~la~---~g~~V~~iD~s~~~l~~a~~~~~~~~-~--~v~~~~~d~~~~~~~-~~fD~I 98 (195)
T TIGR00477 27 KTVAPCKTLDLGCGQ-GRNSLYLSL---AGYDVRAWDHNPASIASVLDMKAREN-L--PLRTDAYDINAAALN-EDYDFI 98 (195)
T ss_pred ccCCCCcEEEeCCCC-CHHHHHHHH---CCCeEEEEECCHHHHHHHHHHHHHhC-C--CceeEeccchhcccc-CCCCEE
Confidence 345678999999996 778899998 68999999999999999999998888 3 488888887654332 469999
Q ss_pred Eecccc-cCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061 207 FLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVR 239 (284)
Q Consensus 207 ~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r 239 (284)
+..... ..+.++...+++.+.+.|+|||++++.
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 99 FSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred EEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 865433 445678889999999999999985554
No 17
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.61 E-value=3.7e-15 Score=135.22 Aligned_cols=107 Identities=17% Similarity=0.275 Sum_probs=96.7
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-------C
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-------G 201 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-------~ 201 (284)
.++++||+||++ .|+|+++||+...++++|+++|++++..+.|++++++.| +.++|+++.||+.+....+ +
T Consensus 78 ~~ak~iLEiGT~-~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag-~~~~I~~~~G~a~e~L~~l~~~~~~~~ 155 (247)
T PLN02589 78 INAKNTMEIGVY-TGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG-VAHKIDFREGPALPVLDQMIEDGKYHG 155 (247)
T ss_pred hCCCEEEEEeCh-hhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC-CCCceEEEeccHHHHHHHHHhccccCC
Confidence 578999999998 699999999865678999999999999999999999999 7999999999998876543 4
Q ss_pred CccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 202 EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 202 ~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
.||+||+++.. ..+..+++.+.+.|+|||+|++.+.
T Consensus 156 ~fD~iFiDadK----~~Y~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 156 TFDFIFVDADK----DNYINYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred cccEEEecCCH----HHhHHHHHHHHHhcCCCeEEEEcCC
Confidence 79999999884 8889999999999999999999874
No 18
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.59 E-value=4.5e-15 Score=112.24 Aligned_cols=95 Identities=20% Similarity=0.324 Sum_probs=78.0
Q ss_pred EEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecccccC
Q 036061 135 AFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGM 214 (284)
Q Consensus 135 L~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~v~~ 214 (284)
||||||+ |.++..++++ ++.+|+++|+|+++++.+++..... +++++++|+.+++.+.+.||+|+......+
T Consensus 1 LdiG~G~-G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~-----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~ 72 (95)
T PF08241_consen 1 LDIGCGT-GRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNE-----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHH 72 (95)
T ss_dssp EEET-TT-SHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTS-----TEEEEESBTTSSSS-TT-EEEEEEESHGGG
T ss_pred CEecCcC-CHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhccccc-----CchheeehHHhCccccccccccccccceee
Confidence 7999996 7888888882 7999999999999999999977654 456999999999888789999997765533
Q ss_pred ChHHHHHHHHHHHhhcCCCcEEEE
Q 036061 215 SKEEKVKIIKHIRKYMKDGGVLLV 238 (284)
Q Consensus 215 ~~~~k~~il~~l~~~l~pGg~lv~ 238 (284)
- +++.++++++.|.|||||++++
T Consensus 73 ~-~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 73 L-EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp S-SHHHHHHHHHHHHEEEEEEEEE
T ss_pred c-cCHHHHHHHHHHHcCcCeEEeC
Confidence 2 7889999999999999999975
No 19
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.59 E-value=4.3e-14 Score=130.61 Aligned_cols=103 Identities=22% Similarity=0.312 Sum_probs=86.0
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
.++.+|||||||+ |..++.+|+ .|.+|+++|+|+.|++.++++++..| + ++++.++|+.+... .+.||+|+.
T Consensus 119 ~~~~~vLDlGcG~-G~~~~~la~---~g~~V~avD~s~~ai~~~~~~~~~~~-l--~v~~~~~D~~~~~~-~~~fD~I~~ 190 (287)
T PRK12335 119 VKPGKALDLGCGQ-GRNSLYLAL---LGFDVTAVDINQQSLENLQEIAEKEN-L--NIRTGLYDINSASI-QEEYDFILS 190 (287)
T ss_pred cCCCCEEEeCCCC-CHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHcC-C--ceEEEEechhcccc-cCCccEEEE
Confidence 4567999999996 778899998 68999999999999999999999988 4 79999999865433 357999986
Q ss_pred cccc-cCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061 209 AALV-GMSKEEKVKIIKHIRKYMKDGGVLLVR 239 (284)
Q Consensus 209 aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r 239 (284)
.... .++.++...+++.+.+.|+|||++++-
T Consensus 191 ~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 191 TVVLMFLNRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 6433 446678889999999999999996654
No 20
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.59 E-value=3.5e-14 Score=127.38 Aligned_cols=126 Identities=17% Similarity=0.238 Sum_probs=96.6
Q ss_pred CCcchhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhc-CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCC
Q 036061 107 PYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNH-LKSTHFDNFDIDEAANDVARQIVSSDIEFEKR 185 (284)
Q Consensus 107 py~~ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~-~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~ 185 (284)
|+|.+....+.. +......++.+|||||||+ |..+..++++. .++++|+|+|+|+++++.|++.++..+ ...+
T Consensus 34 p~y~~~~~~~~~----l~~~~~~~~~~iLDlGcG~-G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~-~~~~ 107 (239)
T TIGR00740 34 PGYSNIITAIGM----LAERFVTPDSNVYDLGCSR-GAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH-SEIP 107 (239)
T ss_pred CCHHHHHHHHHH----HHHHhCCCCCEEEEecCCC-CHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-CCCC
Confidence 555555444321 2222345778999999998 55666677632 378999999999999999999998877 5678
Q ss_pred eEEEEeccccccccCCCccEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 186 MKFVTCDIMQVKEKLGEYDCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 186 I~f~~~D~~~~~~~~~~fD~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
++|+++|+.+.+. ..+|+|+....+ ..+.+++.++++++.+.|+|||.+++..
T Consensus 108 v~~~~~d~~~~~~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 108 VEILCNDIRHVEI--KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred eEEEECChhhCCC--CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 9999999987654 468988765433 4456788999999999999999999975
No 21
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.58 E-value=5e-14 Score=112.11 Aligned_cols=106 Identities=14% Similarity=0.158 Sum_probs=85.5
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc-ccCCCccE
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK-EKLGEYDC 205 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~-~~~~~fD~ 205 (284)
...++.+|+|+|||+ |..+..+++ ..++++|+++|+|+.+++.|+++++..+ + .+++++++|+.+.. .....||+
T Consensus 16 ~~~~~~~vldlG~G~-G~~~~~l~~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~D~ 91 (124)
T TIGR02469 16 RLRPGDVLWDIGAGS-GSITIEAAR-LVPNGRVYAIERNPEALRLIERNARRFG-V-SNIVIVEGDAPEALEDSLPEPDR 91 (124)
T ss_pred CCCCCCEEEEeCCCC-CHHHHHHHH-HCCCceEEEEcCCHHHHHHHHHHHHHhC-C-CceEEEeccccccChhhcCCCCE
Confidence 456678999999998 556677777 4667999999999999999999999988 3 47999999986533 22357999
Q ss_pred EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
|+..... ....++++.+.+.|+|||.+++..
T Consensus 92 v~~~~~~----~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 92 VFIGGSG----GLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred EEECCcc----hhHHHHHHHHHHHcCCCCEEEEEe
Confidence 9976432 455689999999999999998754
No 22
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.58 E-value=2.3e-14 Score=131.00 Aligned_cols=112 Identities=23% Similarity=0.342 Sum_probs=90.8
Q ss_pred HHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCC
Q 036061 122 ILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLG 201 (284)
Q Consensus 122 ~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~ 201 (284)
++....+.++.+|||||||++ ..+..+|+ ..+++|+++|+|+.+++.|++.... .++++|+++|+.+.+.+.+
T Consensus 44 ~l~~l~l~~~~~VLDiGcG~G-~~a~~la~--~~~~~v~giD~s~~~~~~a~~~~~~----~~~i~~~~~D~~~~~~~~~ 116 (263)
T PTZ00098 44 ILSDIELNENSKVLDIGSGLG-GGCKYINE--KYGAHVHGVDICEKMVNIAKLRNSD----KNKIEFEANDILKKDFPEN 116 (263)
T ss_pred HHHhCCCCCCCEEEEEcCCCC-hhhHHHHh--hcCCEEEEEECCHHHHHHHHHHcCc----CCceEEEECCcccCCCCCC
Confidence 334455688899999999974 55677776 2588999999999999999997643 2589999999987666556
Q ss_pred CccEEEecc-cccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 202 EYDCIFLAA-LVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 202 ~fD~V~~aa-~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.||+|+... +.+++.+++.++++++++.|||||.+++..
T Consensus 117 ~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 117 TFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred CeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 899999743 345666789999999999999999999865
No 23
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.58 E-value=5.6e-14 Score=123.76 Aligned_cols=112 Identities=21% Similarity=0.189 Sum_probs=87.7
Q ss_pred cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061 126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC 205 (284)
Q Consensus 126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~ 205 (284)
..+.++.+|||||||+ |+.+..+++...++++|+++|+|+++++.|++++.+.| +.++++++++|+.+.....+.||.
T Consensus 68 l~~~~~~~VLDiG~Gs-G~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~-~~~~v~~~~~d~~~~~~~~~~fD~ 145 (205)
T PRK13944 68 IEPRPGMKILEVGTGS-GYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG-YWGVVEVYHGDGKRGLEKHAPFDA 145 (205)
T ss_pred cCCCCCCEEEEECcCc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCCcEEEEECCcccCCccCCCccE
Confidence 3457789999999997 56667777743346799999999999999999999999 677899999999875554568999
Q ss_pred EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCcccc
Q 036061 206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARA 246 (284)
Q Consensus 206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~glr~ 246 (284)
|++..... .+.+.+.+.|+|||+|++-...+..+
T Consensus 146 Ii~~~~~~-------~~~~~l~~~L~~gG~lvi~~~~~~~~ 179 (205)
T PRK13944 146 IIVTAAAS-------TIPSALVRQLKDGGVLVIPVEEGVGQ 179 (205)
T ss_pred EEEccCcc-------hhhHHHHHhcCcCcEEEEEEcCCCce
Confidence 99876541 23357889999999998865444334
No 24
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.57 E-value=3.8e-14 Score=129.46 Aligned_cols=111 Identities=12% Similarity=0.130 Sum_probs=88.2
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh--cCCCCCCeEEEEeccccccccCCCcc
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSS--DIEFEKRMKFVTCDIMQVKEKLGEYD 204 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~--~G~l~~~I~f~~~D~~~~~~~~~~fD 204 (284)
...++.+|||||||+ |..+..+++...+.++|+|+|+|++|++.|++.... .+ ..++++|+++|+.+++.+.+.||
T Consensus 70 ~~~~~~~VLDlGcGt-G~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~-~~~~i~~~~~d~~~lp~~~~sfD 147 (261)
T PLN02233 70 GAKMGDRVLDLCCGS-GDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS-CYKNIEWIEGDATDLPFDDCYFD 147 (261)
T ss_pred CCCCCCEEEEECCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc-cCCCeEEEEcccccCCCCCCCEe
Confidence 456789999999998 556677877334567999999999999999987542 22 23689999999998887667899
Q ss_pred EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+|++...++ ..+++.+++++++|.|||||.+++.+
T Consensus 148 ~V~~~~~l~-~~~d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 148 AITMGYGLR-NVVDRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred EEEEecccc-cCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence 998764432 22578889999999999999998865
No 25
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.57 E-value=5.8e-14 Score=124.80 Aligned_cols=135 Identities=13% Similarity=0.170 Sum_probs=99.0
Q ss_pred HHHHhcCCCCcccccccCCCcchhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHH
Q 036061 89 FATFFAKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAA 168 (284)
Q Consensus 89 ~a~~l~~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~a 168 (284)
|-++-.+++.||..-+..|.+..+.. +....++.|||++|||. |..+++||+ .|.+|||+|+|+.|
T Consensus 3 Wd~ry~~~~~~w~~~~p~~~l~~~~~----------~l~~~~~~rvLd~GCG~-G~da~~LA~---~G~~V~gvD~S~~A 68 (213)
T TIGR03840 3 WHERWQEGQIGFHQSEVNPLLVKHWP----------ALGLPAGARVFVPLCGK-SLDLAWLAE---QGHRVLGVELSEIA 68 (213)
T ss_pred HHHHHhcCCCCCccCCCCHHHHHHHH----------hhCCCCCCeEEEeCCCc-hhHHHHHHh---CCCeEEEEeCCHHH
Confidence 33444455678865455555433322 11224667999999995 899999998 89999999999999
Q ss_pred HHHHHHHHHhcCC-------------CCCCeEEEEecccccccc-CCCccEEEecc-cccCChHHHHHHHHHHHhhcCCC
Q 036061 169 NDVARQIVSSDIE-------------FEKRMKFVTCDIMQVKEK-LGEYDCIFLAA-LVGMSKEEKVKIIKHIRKYMKDG 233 (284)
Q Consensus 169 i~~Ar~~~~~~G~-------------l~~~I~f~~~D~~~~~~~-~~~fD~V~~aa-~v~~~~~~k~~il~~l~~~l~pG 233 (284)
++.+.+ +.|. -..+|+|.++|+.++... .+.||.||-.. +++.+++.+.++++.+.+.||||
T Consensus 69 i~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpg 145 (213)
T TIGR03840 69 VEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPG 145 (213)
T ss_pred HHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCC
Confidence 998644 2221 024799999999887654 34699998654 45778899999999999999999
Q ss_pred cEEEEEe
Q 036061 234 GVLLVRS 240 (284)
Q Consensus 234 g~lv~r~ 240 (284)
|++++.+
T Consensus 146 G~~ll~~ 152 (213)
T TIGR03840 146 ARQLLIT 152 (213)
T ss_pred CeEEEEE
Confidence 9866654
No 26
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.57 E-value=3e-14 Score=129.17 Aligned_cols=107 Identities=18% Similarity=0.270 Sum_probs=88.7
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-cCCCccEE
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-KLGEYDCI 206 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-~~~~fD~V 206 (284)
..++.+|||||||+ |..+..+|+ .|.+|+++|+|+++++.|++.+...| +..+++|+++|+.++.. ..+.||+|
T Consensus 42 ~~~~~~vLDiGcG~-G~~a~~la~---~g~~v~~vD~s~~~l~~a~~~~~~~g-~~~~v~~~~~d~~~l~~~~~~~fD~V 116 (255)
T PRK11036 42 PPRPLRVLDAGGGE-GQTAIKLAE---LGHQVILCDLSAEMIQRAKQAAEAKG-VSDNMQFIHCAAQDIAQHLETPVDLI 116 (255)
T ss_pred CCCCCEEEEeCCCc-hHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHhcC-CccceEEEEcCHHHHhhhcCCCCCEE
Confidence 36678999999997 677788888 58999999999999999999999998 67899999999987643 33579999
Q ss_pred EecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
++...... .++..++++.+.+.|||||.+++-.
T Consensus 117 ~~~~vl~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 117 LFHAVLEW-VADPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred EehhHHHh-hCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 97654321 2455689999999999999998753
No 27
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.57 E-value=7.3e-14 Score=124.10 Aligned_cols=113 Identities=17% Similarity=0.192 Sum_probs=91.6
Q ss_pred HhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCc
Q 036061 124 DENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEY 203 (284)
Q Consensus 124 ~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~f 203 (284)
......++++|||+|||+ |..+..+++...++++|+|+|+|+++++.|++.+.+.+ + ++++++++|+.+.+...+.|
T Consensus 39 ~~l~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~~~~f 115 (231)
T TIGR02752 39 KRMNVQAGTSALDVCCGT-ADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG-L-HNVELVHGNAMELPFDDNSF 115 (231)
T ss_pred HhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC-C-CceEEEEechhcCCCCCCCc
Confidence 344557789999999997 55667788744577899999999999999999998887 4 68999999998876555689
Q ss_pred cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
|+|++...+.. .++..++++++.+.|+|||.+++.+
T Consensus 116 D~V~~~~~l~~-~~~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 116 DYVTIGFGLRN-VPDYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred cEEEEeccccc-CCCHHHHHHHHHHHcCcCeEEEEEE
Confidence 99987654322 2556789999999999999998865
No 28
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.55 E-value=3.8e-14 Score=130.49 Aligned_cols=112 Identities=18% Similarity=0.302 Sum_probs=85.9
Q ss_pred HHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCC
Q 036061 122 ILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLG 201 (284)
Q Consensus 122 ~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~ 201 (284)
++.+++++++.+|||||||- |-.++.+|++ .|++|+||.+|++..+.|++.+++.| +++++++..+|..+++.
T Consensus 54 ~~~~~~l~~G~~vLDiGcGw-G~~~~~~a~~--~g~~v~gitlS~~Q~~~a~~~~~~~g-l~~~v~v~~~D~~~~~~--- 126 (273)
T PF02353_consen 54 LCEKLGLKPGDRVLDIGCGW-GGLAIYAAER--YGCHVTGITLSEEQAEYARERIREAG-LEDRVEVRLQDYRDLPG--- 126 (273)
T ss_dssp HHTTTT--TT-EEEEES-TT-SHHHHHHHHH--H--EEEEEES-HHHHHHHHHHHHCST-SSSTEEEEES-GGG------
T ss_pred HHHHhCCCCCCEEEEeCCCc-cHHHHHHHHH--cCcEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEEeeccccCC---
Confidence 34455679999999999995 6677889983 49999999999999999999999999 89999999999887554
Q ss_pred CccEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 202 EYDCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 202 ~fD~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.||.|+.--.+ ++..+.+..+++.+.+.|+|||++++..
T Consensus 127 ~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 127 KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 89998855444 6666888999999999999999998854
No 29
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.55 E-value=6.3e-14 Score=127.95 Aligned_cols=109 Identities=16% Similarity=0.187 Sum_probs=90.7
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF 207 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~ 207 (284)
..++.+|||||||+ |..++.+++...++.+|+++|+++++++.|+++.+..|. ++++|+.+|+.+++...+.||+|+
T Consensus 75 ~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~--~~v~~~~~d~~~l~~~~~~fD~Vi 151 (272)
T PRK11873 75 LKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY--TNVEFRLGEIEALPVADNSVDVII 151 (272)
T ss_pred CCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC--CCEEEEEcchhhCCCCCCceeEEE
Confidence 46889999999998 777777777445667899999999999999999999883 589999999988765556899999
Q ss_pred ecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.....++ ..++.++++++.+.|||||++++.+
T Consensus 152 ~~~v~~~-~~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 152 SNCVINL-SPDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred EcCcccC-CCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 7654332 2567789999999999999999865
No 30
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.55 E-value=9.4e-14 Score=123.09 Aligned_cols=109 Identities=19% Similarity=0.189 Sum_probs=86.7
Q ss_pred HHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCC
Q 036061 123 LDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGE 202 (284)
Q Consensus 123 l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~ 202 (284)
+....+.++.+|||||||+ |+.+..+|+...++++|+++|+++++++.|++++++.|. .+++++++|+.+.....+.
T Consensus 69 ~~~l~~~~g~~VLdIG~Gs-G~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~--~~v~~~~gd~~~~~~~~~~ 145 (212)
T PRK13942 69 CELLDLKEGMKVLEIGTGS-GYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY--DNVEVIVGDGTLGYEENAP 145 (212)
T ss_pred HHHcCCCCcCEEEEECCcc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--CCeEEEECCcccCCCcCCC
Confidence 3344567899999999997 566677887444568999999999999999999999984 5899999999765555568
Q ss_pred ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
||+|++.+.+ .++.+.+.+.|||||++++-..
T Consensus 146 fD~I~~~~~~-------~~~~~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 146 YDRIYVTAAG-------PDIPKPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred cCEEEECCCc-------ccchHHHHHhhCCCcEEEEEEc
Confidence 9999987654 1234567789999999988653
No 31
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.54 E-value=5.2e-14 Score=132.34 Aligned_cols=107 Identities=12% Similarity=0.197 Sum_probs=88.9
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
.++.+|||||||+ |..+..||+ .|++|+|||+++++++.|++.++..+ ...+++|+++|+.+++...+.||+|+.
T Consensus 130 ~~g~~ILDIGCG~-G~~s~~La~---~g~~V~GID~s~~~i~~Ar~~~~~~~-~~~~i~~~~~dae~l~~~~~~FD~Vi~ 204 (322)
T PLN02396 130 FEGLKFIDIGCGG-GLLSEPLAR---MGATVTGVDAVDKNVKIARLHADMDP-VTSTIEYLCTTAEKLADEGRKFDAVLS 204 (322)
T ss_pred CCCCEEEEeeCCC-CHHHHHHHH---cCCEEEEEeCCHHHHHHHHHHHHhcC-cccceeEEecCHHHhhhccCCCCEEEE
Confidence 4667999999997 556778887 78999999999999999999877666 457899999999887765568999997
Q ss_pred cccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
...+. +..+...+++++.+.|||||.+++.+.
T Consensus 205 ~~vLe-Hv~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 205 LEVIE-HVANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred hhHHH-hcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 65431 224667899999999999999998764
No 32
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.54 E-value=1.2e-13 Score=122.23 Aligned_cols=107 Identities=20% Similarity=0.181 Sum_probs=85.6
Q ss_pred hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061 125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD 204 (284)
Q Consensus 125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD 204 (284)
.+.+.++.+|||||||+ |+.+..||+...++++|+++|+|+++++.|++++++.| + ++++++++|+.+.......||
T Consensus 72 ~l~~~~~~~VLDiG~Gs-G~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g-~-~~v~~~~~d~~~~~~~~~~fD 148 (215)
T TIGR00080 72 LLELKPGMKVLEIGTGS-GYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG-L-DNVIVIVGDGTQGWEPLAPYD 148 (215)
T ss_pred HhCCCCcCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC-C-CCeEEEECCcccCCcccCCCC
Confidence 34568889999999997 56667788743446789999999999999999999999 4 689999999987554446799
Q ss_pred EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
+|+++... ..+.+.+.+.|+|||++++-..
T Consensus 149 ~Ii~~~~~-------~~~~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 149 RIYVTAAG-------PKIPEALIDQLKEGGILVMPVG 178 (215)
T ss_pred EEEEcCCc-------ccccHHHHHhcCcCcEEEEEEc
Confidence 99977543 2345678899999999988553
No 33
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.53 E-value=2.5e-14 Score=127.89 Aligned_cols=105 Identities=16% Similarity=0.253 Sum_probs=91.2
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
-++.+||||||| +|.=+..||+ .|+.|||+|+++++++.|+..+...|. .+++.++.+.++...-++||+|+.
T Consensus 58 l~g~~vLDvGCG-gG~Lse~mAr---~Ga~VtgiD~se~~I~~Ak~ha~e~gv---~i~y~~~~~edl~~~~~~FDvV~c 130 (243)
T COG2227 58 LPGLRVLDVGCG-GGILSEPLAR---LGASVTGIDASEKPIEVAKLHALESGV---NIDYRQATVEDLASAGGQFDVVTC 130 (243)
T ss_pred CCCCeEEEecCC-ccHhhHHHHH---CCCeeEEecCChHHHHHHHHhhhhccc---cccchhhhHHHHHhcCCCccEEEE
Confidence 478999999999 7888999999 889999999999999999999999984 589999999988776578999987
Q ss_pred cccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
.-.+ .+.++...++..+.+.+||||.+++.+-
T Consensus 131 mEVl-EHv~dp~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 131 MEVL-EHVPDPESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred hhHH-HccCCHHHHHHHHHHHcCCCcEEEEecc
Confidence 6544 1235667799999999999999999774
No 34
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.52 E-value=1.9e-13 Score=119.49 Aligned_cols=120 Identities=16% Similarity=0.202 Sum_probs=93.4
Q ss_pred hhHHHHHHH--HhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEec
Q 036061 115 LANLEYRIL--DENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCD 192 (284)
Q Consensus 115 l~~~E~~~l--~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D 192 (284)
+.+.|..++ .+....++.+|||+|||+ |.-++.+|+...++.+|+++|+|+++++.|+++++..| +.++++++++|
T Consensus 23 ~t~~~~r~~~l~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g-~~~~v~~~~~d 100 (198)
T PRK00377 23 MTKEEIRALALSKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG-VLNNIVLIKGE 100 (198)
T ss_pred CCHHHHHHHHHHHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC-CCCCeEEEEec
Confidence 344444333 344568889999999998 55566676644567899999999999999999999999 56899999999
Q ss_pred cccccccC-CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 193 IMQVKEKL-GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 193 ~~~~~~~~-~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+.+..... ..||.||+.... ....++++.+.+.|+|||++++..
T Consensus 101 ~~~~l~~~~~~~D~V~~~~~~----~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 101 APEILFTINEKFDRIFIGGGS----EKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred hhhhHhhcCCCCCEEEECCCc----ccHHHHHHHHHHHcCCCcEEEEEe
Confidence 97754433 479999975432 455789999999999999998854
No 35
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.52 E-value=4.4e-14 Score=110.17 Aligned_cols=97 Identities=22% Similarity=0.343 Sum_probs=77.7
Q ss_pred EEEeccCCChhHHHHHHhhcC--CCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec-c
Q 036061 134 VAFVGSGPMPLTSIVMAKNHL--KSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA-A 210 (284)
Q Consensus 134 VL~IGsG~lp~tai~LA~~~~--~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a-a 210 (284)
|||+|||++ .....+++... +..+++++|+|++|++.|++.....|. +++|+++|+.+++...+.||+|+.. .
T Consensus 1 ILDlgcG~G-~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~---~~~~~~~D~~~l~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTG-RVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP---KVRFVQADARDLPFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTS-HHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT---TSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred CEEeecCCc-HHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC---ceEEEECCHhHCcccCCCeeEEEEcCC
Confidence 799999984 55566666331 348999999999999999999998873 8999999999988777799999984 3
Q ss_pred -cccCChHHHHHHHHHHHhhcCCCc
Q 036061 211 -LVGMSKEEKVKIIKHIRKYMKDGG 234 (284)
Q Consensus 211 -~v~~~~~~k~~il~~l~~~l~pGg 234 (284)
+...++++..++++++.++++|||
T Consensus 77 ~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 336788999999999999999998
No 36
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.52 E-value=3.3e-13 Score=119.37 Aligned_cols=151 Identities=19% Similarity=0.257 Sum_probs=109.9
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCC-CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLK-STHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC 205 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~-g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~ 205 (284)
...++.+||+||||+ |..+..+++. .+ ..+|+++|+++.+++.|++.+...+ +..+++|+.+|+.+.+...+.||+
T Consensus 48 ~~~~~~~vldiG~G~-G~~~~~l~~~-~~~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~D~ 124 (239)
T PRK00216 48 GVRPGDKVLDLACGT-GDLAIALAKA-VGKTGEVVGLDFSEGMLAVGREKLRDLG-LSGNVEFVQGDAEALPFPDNSFDA 124 (239)
T ss_pred CCCCCCeEEEeCCCC-CHHHHHHHHH-cCCCCeEEEEeCCHHHHHHHHHhhcccc-cccCeEEEecccccCCCCCCCccE
Confidence 345678999999998 4556667763 33 5899999999999999999988766 567899999999876655567999
Q ss_pred EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCc--cc---c----c---c--------------C--------cc
Q 036061 206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKG--AR---A----F---L--------------Y--------PV 251 (284)
Q Consensus 206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~g--lr---~----~---l--------------Y--------p~ 251 (284)
|+....++ ...+...+++.+.+.|+|||.+++..... .. . + . | +.
T Consensus 125 I~~~~~l~-~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (239)
T PRK00216 125 VTIAFGLR-NVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAF 203 (239)
T ss_pred EEEecccc-cCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhC
Confidence 98754432 22566789999999999999988754210 00 0 0 0 0 00
Q ss_pred CCCc---cC---CCcEEEEEecCCcceeeeEEEEeec
Q 036061 252 VEKH---DL---LDFELLSVFHPTNEVINSVVLVRKP 282 (284)
Q Consensus 252 v~~~---dl---~gfe~~~~~hP~~~v~nsvi~~r~~ 282 (284)
...+ ++ .||++....+-.+.+. ++++||||
T Consensus 204 ~~~~~~~~~l~~aGf~~~~~~~~~~~~~-~~~~~~~~ 239 (239)
T PRK00216 204 PDQEELAAMLEEAGFERVRYRNLTGGIV-ALHVGYKP 239 (239)
T ss_pred CCHHHHHHHHHhCCCceeeeeeeecCcE-EEEEEecC
Confidence 1111 11 7999988888777888 69999986
No 37
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.52 E-value=2.5e-13 Score=121.18 Aligned_cols=128 Identities=13% Similarity=0.177 Sum_probs=95.9
Q ss_pred cCCCCcccccccCCCcchhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHH
Q 036061 94 AKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVAR 173 (284)
Q Consensus 94 ~~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar 173 (284)
.+++.||.--+.+|++..|... ....++.|||++|||. |..+++||+ .|++|+|||+|+.|++.+.
T Consensus 11 ~~~~~~~~~~~p~~~L~~~~~~----------~~~~~~~rvL~~gCG~-G~da~~LA~---~G~~V~avD~s~~Ai~~~~ 76 (218)
T PRK13255 11 AENQIGFHQEEVNPLLQKYWPA----------LALPAGSRVLVPLCGK-SLDMLWLAE---QGHEVLGVELSELAVEQFF 76 (218)
T ss_pred cCCCCCCCCCCCCHHHHHHHHh----------hCCCCCCeEEEeCCCC-hHhHHHHHh---CCCeEEEEccCHHHHHHHH
Confidence 3345566555666765544332 1224567999999995 899999998 8999999999999999875
Q ss_pred HHHHhcCC-------------CCCCeEEEEecccccccc-CCCccEEEeccc-ccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061 174 QIVSSDIE-------------FEKRMKFVTCDIMQVKEK-LGEYDCIFLAAL-VGMSKEEKVKIIKHIRKYMKDGGVLLV 238 (284)
Q Consensus 174 ~~~~~~G~-------------l~~~I~f~~~D~~~~~~~-~~~fD~V~~aa~-v~~~~~~k~~il~~l~~~l~pGg~lv~ 238 (284)
+ +.|. ...+|++.++|+.++... .+.||.||-.+. ...+++.+.++++.+.+.|+|||++++
T Consensus 77 ~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 77 A---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred H---HcCCCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 3 3321 136899999999987553 357999995543 466889999999999999999986444
No 38
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.51 E-value=4.3e-13 Score=117.36 Aligned_cols=107 Identities=19% Similarity=0.289 Sum_probs=85.6
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI 206 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V 206 (284)
...++.++||+|||. |-.|++||+ .|..|+++|+|+.+++.+++++++.++ .|+..+.|+.+...+ .+||+|
T Consensus 27 ~~~~~g~~LDlgcG~-GRNalyLA~---~G~~VtAvD~s~~al~~l~~~a~~~~l---~i~~~~~Dl~~~~~~-~~yD~I 98 (192)
T PF03848_consen 27 PLLKPGKALDLGCGE-GRNALYLAS---QGFDVTAVDISPVALEKLQRLAEEEGL---DIRTRVADLNDFDFP-EEYDFI 98 (192)
T ss_dssp TTS-SSEEEEES-TT-SHHHHHHHH---TT-EEEEEESSHHHHHHHHHHHHHTT----TEEEEE-BGCCBS-T-TTEEEE
T ss_pred hhcCCCcEEEcCCCC-cHHHHHHHH---CCCeEEEEECCHHHHHHHHHHHhhcCc---eeEEEEecchhcccc-CCcCEE
Confidence 345789999999995 889999999 899999999999999999999999884 499999999776553 579998
Q ss_pred Eecc-cccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 207 FLAA-LVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 207 ~~aa-~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
+... +-..+.+...++++.+.+.++|||.+++...
T Consensus 99 ~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 99 VSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp EEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 7432 2255678889999999999999999888664
No 39
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.49 E-value=3e-13 Score=122.58 Aligned_cols=106 Identities=17% Similarity=0.211 Sum_probs=84.1
Q ss_pred HHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCC
Q 036061 122 ILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLG 201 (284)
Q Consensus 122 ~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~ 201 (284)
++......++.+|||||||++ ..+..+++ ..++++|+|+|+|+.+++.|++. +++|+++|+.++. ..+
T Consensus 21 ll~~l~~~~~~~vLDlGcG~G-~~~~~l~~-~~p~~~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~~-~~~ 88 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGPG-NLTRYLAR-RWPGAVIEALDSSPEMVAAARER---------GVDARTGDVRDWK-PKP 88 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCCC-HHHHHHHH-HCCCCEEEEEECCHHHHHHHHhc---------CCcEEEcChhhCC-CCC
Confidence 344445678899999999985 55667777 35789999999999999999761 4789999998764 346
Q ss_pred CccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 202 EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 202 ~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.||+|+....+++- .++.++++++.+.|||||.+++..
T Consensus 89 ~fD~v~~~~~l~~~-~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 89 DTDVVVSNAALQWV-PEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred CceEEEEehhhhhC-CCHHHHHHHHHHhCCCCcEEEEEc
Confidence 89999987655332 466789999999999999998853
No 40
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.48 E-value=5.9e-13 Score=115.16 Aligned_cols=105 Identities=17% Similarity=0.153 Sum_probs=84.7
Q ss_pred cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061 126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC 205 (284)
Q Consensus 126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~ 205 (284)
....++.+|||||||+ |..++.+++ ..++++|+++|+|+++++.|++++++.+ + .+++++++|+.. .. .+.||+
T Consensus 27 l~~~~~~~vLDiG~G~-G~~~~~la~-~~~~~~v~~vD~s~~~~~~a~~n~~~~~-~-~~i~~~~~d~~~-~~-~~~~D~ 100 (187)
T PRK08287 27 LELHRAKHLIDVGAGT-GSVSIEAAL-QFPSLQVTAIERNPDALRLIKENRQRFG-C-GNIDIIPGEAPI-EL-PGKADA 100 (187)
T ss_pred cCCCCCCEEEEECCcC-CHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHhC-C-CCeEEEecCchh-hc-CcCCCE
Confidence 3456889999999997 566777777 4678999999999999999999999988 4 479999999743 11 247999
Q ss_pred EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
||++... ....++++.+.+.|+|||++++..
T Consensus 101 v~~~~~~----~~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 101 IFIGGSG----GNLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred EEECCCc----cCHHHHHHHHHHhcCCCeEEEEEE
Confidence 9976543 334578999999999999998854
No 41
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.48 E-value=3.8e-13 Score=115.09 Aligned_cols=106 Identities=22% Similarity=0.343 Sum_probs=83.8
Q ss_pred CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061 130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA 209 (284)
Q Consensus 130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a 209 (284)
++.+|||+|||+ |.-++.+++ ..+..+|+++|+|+.|++.|+++++..+ +++ ++++.+|..+... ...||+|+.+
T Consensus 31 ~~~~vLDlG~G~-G~i~~~la~-~~~~~~v~~vDi~~~a~~~a~~n~~~n~-~~~-v~~~~~d~~~~~~-~~~fD~Iv~N 105 (170)
T PF05175_consen 31 KGGRVLDLGCGS-GVISLALAK-RGPDAKVTAVDINPDALELAKRNAERNG-LEN-VEVVQSDLFEALP-DGKFDLIVSN 105 (170)
T ss_dssp TTCEEEEETSTT-SHHHHHHHH-TSTCEEEEEEESBHHHHHHHHHHHHHTT-CTT-EEEEESSTTTTCC-TTCEEEEEE-
T ss_pred cCCeEEEecCCh-HHHHHHHHH-hCCCCEEEEEcCCHHHHHHHHHHHHhcC-ccc-ccccccccccccc-ccceeEEEEc
Confidence 778999999998 555677777 5778889999999999999999999999 565 9999999976443 4689999988
Q ss_pred ccccCCh----HHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 210 ALVGMSK----EEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 210 a~v~~~~----~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.-..... ....+++++..++|+|||.+++-.
T Consensus 106 PP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 106 PPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp --SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cchhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 6431111 246889999999999999885433
No 42
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.47 E-value=9.4e-13 Score=113.97 Aligned_cols=119 Identities=19% Similarity=0.167 Sum_probs=100.0
Q ss_pred hhhhHHHHHHHH--hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE
Q 036061 113 VKLANLEYRILD--ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVT 190 (284)
Q Consensus 113 ~~l~~~E~~~l~--~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~ 190 (284)
.++.+.|..++. +..+.++++++|||||++.+| +-+|. ..|.++|++||.|+++++..++|++++|. ++++++.
T Consensus 15 ~p~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~-iE~a~-~~p~~~v~AIe~~~~a~~~~~~N~~~fg~--~n~~vv~ 90 (187)
T COG2242 15 GPMTKEEIRALTLSKLRPRPGDRLWDIGAGTGSIT-IEWAL-AGPSGRVIAIERDEEALELIERNAARFGV--DNLEVVE 90 (187)
T ss_pred CCCcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHH-HHHHH-hCCCceEEEEecCHHHHHHHHHHHHHhCC--CcEEEEe
Confidence 346677766543 345799999999999997776 44553 57999999999999999999999999995 8999999
Q ss_pred eccccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 191 CDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 191 ~D~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
||+-+.+.++.+||.||+... ..-..+++.++.+|+|||++|+.-
T Consensus 91 g~Ap~~L~~~~~~daiFIGGg-----~~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 91 GDAPEALPDLPSPDAIFIGGG-----GNIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred ccchHhhcCCCCCCEEEECCC-----CCHHHHHHHHHHHcCcCCeEEEEe
Confidence 999888777778999998755 455689999999999999999965
No 43
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.47 E-value=5e-13 Score=131.30 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=89.8
Q ss_pred HHHHHHhc-CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc
Q 036061 119 EYRILDEN-GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK 197 (284)
Q Consensus 119 E~~~l~~~-~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~ 197 (284)
+.+.+.+. ...++.+|||||||+ |..++.+|+ ..+++|+|+|+|+++++.|+++.. + ...+++|+++|+.+.+
T Consensus 254 ~te~l~~~~~~~~~~~vLDiGcG~-G~~~~~la~--~~~~~v~gvDiS~~~l~~A~~~~~--~-~~~~v~~~~~d~~~~~ 327 (475)
T PLN02336 254 TTKEFVDKLDLKPGQKVLDVGCGI-GGGDFYMAE--NFDVHVVGIDLSVNMISFALERAI--G-RKCSVEFEVADCTKKT 327 (475)
T ss_pred HHHHHHHhcCCCCCCEEEEEeccC-CHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHhh--c-CCCceEEEEcCcccCC
Confidence 33433333 456788999999998 456678887 348899999999999999999775 3 3468999999998766
Q ss_pred ccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 198 EKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 198 ~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.+.+.||+|+....+. +..++.++++++++.|+|||.+++.+
T Consensus 328 ~~~~~fD~I~s~~~l~-h~~d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 328 YPDNSFDVIYSRDTIL-HIQDKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred CCCCCEEEEEECCccc-ccCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 5456799999764431 22567899999999999999999875
No 44
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.47 E-value=1.1e-12 Score=122.65 Aligned_cols=109 Identities=20% Similarity=0.288 Sum_probs=86.7
Q ss_pred CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061 131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA 210 (284)
Q Consensus 131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa 210 (284)
+.+|||+|||+ |.-++.+|+ ..++++|+++|+|++|++.|+++++..| +.++|+|+++|+.+... .+.||+|+.+.
T Consensus 134 ~~~VLDlG~Gs-G~iai~la~-~~p~~~V~avDis~~al~~A~~n~~~~~-l~~~i~~~~~D~~~~l~-~~~fDlIvsNP 209 (307)
T PRK11805 134 VTRILDLCTGS-GCIAIACAY-AFPDAEVDAVDISPDALAVAEINIERHG-LEDRVTLIESDLFAALP-GRRYDLIVSNP 209 (307)
T ss_pred CCEEEEEechh-hHHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHHHHhC-CCCcEEEEECchhhhCC-CCCccEEEECC
Confidence 37999999997 566677877 4678999999999999999999999999 67889999999865332 24699999763
Q ss_pred -cccC------C-----------------hHHHHHHHHHHHhhcCCCcEEEEEecCc
Q 036061 211 -LVGM------S-----------------KEEKVKIIKHIRKYMKDGGVLLVRSAKG 243 (284)
Q Consensus 211 -~v~~------~-----------------~~~k~~il~~l~~~l~pGg~lv~r~~~g 243 (284)
+++. . .+...++++.+.++|+|||.+++..++.
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~ 266 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS 266 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC
Confidence 2210 0 1234688999999999999999987644
No 45
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.47 E-value=5.9e-13 Score=122.40 Aligned_cols=111 Identities=19% Similarity=0.228 Sum_probs=95.1
Q ss_pred HHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCC
Q 036061 123 LDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGE 202 (284)
Q Consensus 123 l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~ 202 (284)
+.++++.+|++|||||||- |.+++++|+ ..|++|+|+++|++..+.|++.+++.| ++.+|+++..|-.++.. .
T Consensus 65 ~~kl~L~~G~~lLDiGCGW-G~l~~~aA~--~y~v~V~GvTlS~~Q~~~~~~r~~~~g-l~~~v~v~l~d~rd~~e---~ 137 (283)
T COG2230 65 LEKLGLKPGMTLLDIGCGW-GGLAIYAAE--EYGVTVVGVTLSEEQLAYAEKRIAARG-LEDNVEVRLQDYRDFEE---P 137 (283)
T ss_pred HHhcCCCCCCEEEEeCCCh-hHHHHHHHH--HcCCEEEEeeCCHHHHHHHHHHHHHcC-CCcccEEEecccccccc---c
Confidence 3455789999999999996 667899998 359999999999999999999999999 78999999999876554 4
Q ss_pred ccEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 203 YDCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 203 fD~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
||-|+..... ++..+....+++.+.+.|+|||++++.+
T Consensus 138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred cceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence 9999855433 4455778999999999999999999987
No 46
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.47 E-value=3.2e-13 Score=118.79 Aligned_cols=108 Identities=16% Similarity=0.142 Sum_probs=84.4
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecc-cccc--ccCCCccE
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDI-MQVK--EKLGEYDC 205 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~-~~~~--~~~~~fD~ 205 (284)
.++.+|||||||++ ..+..+|+ ..++.+|+++|+|+++++.|++.++..+ + .+++|+++|+ ..++ .+.+.||.
T Consensus 39 ~~~~~VLDiGcGtG-~~~~~la~-~~p~~~v~gVD~s~~~i~~a~~~~~~~~-~-~~v~~~~~d~~~~l~~~~~~~~~D~ 114 (202)
T PRK00121 39 NDAPIHLEIGFGKG-EFLVEMAK-ANPDINFIGIEVHEPGVGKALKKIEEEG-L-TNLRLLCGDAVEVLLDMFPDGSLDR 114 (202)
T ss_pred CCCCeEEEEccCCC-HHHHHHHH-HCCCccEEEEEechHHHHHHHHHHHHcC-C-CCEEEEecCHHHHHHHHcCccccce
Confidence 36789999999985 55566776 4678899999999999999999999888 4 6799999999 5544 23457999
Q ss_pred EEecccccCCh-------HHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 206 IFLAALVGMSK-------EEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 206 V~~aa~v~~~~-------~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
|++.....+.. .....+++++++.|+|||.+++.+
T Consensus 115 V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 115 IYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred EEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 98653221111 124679999999999999999876
No 47
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.46 E-value=2.1e-13 Score=108.18 Aligned_cols=106 Identities=19% Similarity=0.289 Sum_probs=83.9
Q ss_pred CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc--ccCCCccEEEe
Q 036061 131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK--EKLGEYDCIFL 208 (284)
Q Consensus 131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~--~~~~~fD~V~~ 208 (284)
|.+|||+|||. |..++.+++. . ..+++++|+||.+++.|++++...+ +.++++++++|..+.. ...+.||+|+.
T Consensus 1 g~~vlD~~~G~-G~~~~~~~~~-~-~~~~~gvdi~~~~~~~a~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~ 76 (117)
T PF13659_consen 1 GDRVLDPGCGS-GTFLLAALRR-G-AARVTGVDIDPEAVELARRNLPRNG-LDDRVEVIVGDARDLPEPLPDGKFDLIVT 76 (117)
T ss_dssp TEEEEEETSTT-CHHHHHHHHH-C-TCEEEEEESSHHHHHHHHHHCHHCT-TTTTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred CCEEEEcCcch-HHHHHHHHHH-C-CCeEEEEEECHHHHHHHHHHHHHcc-CCceEEEEECchhhchhhccCceeEEEEE
Confidence 46999999996 6677777762 3 6999999999999999999999999 7889999999999876 34467999998
Q ss_pred ccccc-C-Ch-----HHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 209 AALVG-M-SK-----EEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 209 aa~v~-~-~~-----~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+.--+ . .. .....+++++.+.|+|||.+++-.
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 86321 1 11 124689999999999999998754
No 48
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.46 E-value=1.2e-12 Score=121.61 Aligned_cols=108 Identities=21% Similarity=0.273 Sum_probs=89.7
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI 206 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V 206 (284)
...++.+|||||||+ |.-++.+++ ..|+.+++++|+ |.+++.|++++++.| +.++|+++.+|..+.+ +..+|+|
T Consensus 146 ~~~~~~~vlDiG~G~-G~~~~~~~~-~~p~~~~~~~D~-~~~~~~a~~~~~~~g-l~~rv~~~~~d~~~~~--~~~~D~v 219 (306)
T TIGR02716 146 KLDGVKKMIDVGGGI-GDISAAMLK-HFPELDSTILNL-PGAIDLVNENAAEKG-VADRMRGIAVDIYKES--YPEADAV 219 (306)
T ss_pred CCCCCCEEEEeCCch-hHHHHHHHH-HCCCCEEEEEec-HHHHHHHHHHHHhCC-ccceEEEEecCccCCC--CCCCCEE
Confidence 346778999999998 566677777 478899999998 799999999999999 7899999999987533 3458999
Q ss_pred Eecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 207 FLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 207 ~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
++.... .++.+...++++++++.|+|||++++-+
T Consensus 220 ~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 220 LFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred EeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 876644 4565666899999999999999998875
No 49
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.45 E-value=2.8e-12 Score=119.42 Aligned_cols=164 Identities=18% Similarity=0.227 Sum_probs=107.0
Q ss_pred hHHHHHHHHhcC------CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEE
Q 036061 116 ANLEYRILDENG------VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFV 189 (284)
Q Consensus 116 ~~~E~~~l~~~~------~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~ 189 (284)
.+.|.+.|.+.. +.++.+|||+|||++-.|...+.. ...+.+|+++|+|++|++.|++.+.+.. ...+|.++
T Consensus 43 tr~E~~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~-l~~~~~~~~iDiS~~mL~~a~~~l~~~~-p~~~v~~i 120 (301)
T TIGR03438 43 TRTEAAILERHADEIAAATGAGCELVELGSGSSRKTRLLLDA-LRQPARYVPIDISADALKESAAALAADY-PQLEVHGI 120 (301)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHh-hccCCeEEEEECCHHHHHHHHHHHHhhC-CCceEEEE
Confidence 666666665542 356789999999986666554433 2227899999999999999999876643 23478899
Q ss_pred EeccccccccCCCc----c-EEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe--cCccccccCccCCCc------
Q 036061 190 TCDIMQVKEKLGEY----D-CIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS--AKGARAFLYPVVEKH------ 255 (284)
Q Consensus 190 ~~D~~~~~~~~~~f----D-~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~--~~glr~~lYp~v~~~------ 255 (284)
++|..+.......+ + ++|+.+.+ .++.++..++++++++.|+|||.+++.. .+......+-+.++.
T Consensus 121 ~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~~~~~~~~aY~d~~g~t~~F 200 (301)
T TIGR03438 121 CADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVKDPAVLEAAYNDAAGVTAAF 200 (301)
T ss_pred EEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCCCHHHHHHhhcCchhhHHHH
Confidence 99987633222233 2 34444444 4577888999999999999999998744 122111222222221
Q ss_pred ----------------cCCCcEEEEEecCCcceeeeEEEEee
Q 036061 256 ----------------DLLDFELLSVFHPTNEVINSVVLVRK 281 (284)
Q Consensus 256 ----------------dl~gfe~~~~~hP~~~v~nsvi~~r~ 281 (284)
+...|+-.....|....+..-+.+++
T Consensus 201 ~~N~L~~~n~~l~~~f~~~~~~~~~~~~~~~~~ie~~l~~~~ 242 (301)
T TIGR03438 201 NLNLLRRLNRELGGDFDPDAFRHRAFYNEERSRIEMHLVSRR 242 (301)
T ss_pred HHHHHHHHHHHhccCCChHHcEEEEEEcCCcCeEEEEEEeCC
Confidence 11347776777777766666666644
No 50
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.45 E-value=1.4e-12 Score=116.81 Aligned_cols=138 Identities=7% Similarity=0.073 Sum_probs=103.5
Q ss_pred HHHHhcCCCCcccccccCCCcchhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHH
Q 036061 89 FATFFAKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAA 168 (284)
Q Consensus 89 ~a~~l~~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~a 168 (284)
|-++-.+++.+|..-+..|++..|.. +....++.|||..|||. |..+++||+ .|.+|+|+|+|+.|
T Consensus 12 W~~rw~~~~~~f~~~~pnp~L~~~~~----------~l~~~~~~rvLvPgCGk-g~D~~~LA~---~G~~V~GvDlS~~A 77 (226)
T PRK13256 12 WLDRWQNDDVGFCQESPNEFLVKHFS----------KLNINDSSVCLIPMCGC-SIDMLFFLS---KGVKVIGIELSEKA 77 (226)
T ss_pred HHHHHhcCCCCCccCCCCHHHHHHHH----------hcCCCCCCeEEEeCCCC-hHHHHHHHh---CCCcEEEEecCHHH
Confidence 44444456777876667777544421 11334668999999995 899999999 89999999999999
Q ss_pred HHHHHHHHH------hcC----CCCCCeEEEEeccccccc---cCCCccEEEecc-cccCChHHHHHHHHHHHhhcCCCc
Q 036061 169 NDVARQIVS------SDI----EFEKRMKFVTCDIMQVKE---KLGEYDCIFLAA-LVGMSKEEKVKIIKHIRKYMKDGG 234 (284)
Q Consensus 169 i~~Ar~~~~------~~G----~l~~~I~f~~~D~~~~~~---~~~~fD~V~~aa-~v~~~~~~k~~il~~l~~~l~pGg 234 (284)
++.+.+-.. +.+ .-..+|++.+||..++.. ..+.||.|+-.+ ++.++++.+.++.+++.+.|+|||
T Consensus 78 i~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg 157 (226)
T PRK13256 78 VLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNT 157 (226)
T ss_pred HHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCc
Confidence 999866210 000 012489999999998753 235799999544 568889999999999999999999
Q ss_pred EEEEEe
Q 036061 235 VLLVRS 240 (284)
Q Consensus 235 ~lv~r~ 240 (284)
.+++-+
T Consensus 158 ~llll~ 163 (226)
T PRK13256 158 QILLLV 163 (226)
T ss_pred EEEEEE
Confidence 887765
No 51
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.45 E-value=8e-13 Score=116.92 Aligned_cols=138 Identities=18% Similarity=0.262 Sum_probs=99.9
Q ss_pred CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEeccc
Q 036061 132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAAL 211 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~ 211 (284)
++|||||||.+ ..+..+++ ..++++|+|+|+|+++++.|++.+...| +.++++|+.+|..+.+.+ +.||+|+....
T Consensus 1 ~~vLDiGcG~G-~~~~~la~-~~~~~~v~gid~s~~~~~~a~~~~~~~g-l~~~i~~~~~d~~~~~~~-~~fD~I~~~~~ 76 (224)
T smart00828 1 KRVLDFGCGYG-SDLIDLAE-RHPHLQLHGYTISPEQAEVGRERIRALG-LQGRIRIFYRDSAKDPFP-DTYDLVFGFEV 76 (224)
T ss_pred CeEEEECCCCC-HHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHhcC-CCcceEEEecccccCCCC-CCCCEeehHHH
Confidence 48999999975 55677777 4577999999999999999999999999 788999999998654332 47999986543
Q ss_pred ccCChHHHHHHHHHHHhhcCCCcEEEEEecCc-ccc------ccCccCCCcc----C--CCcEEEEEecCCcceee
Q 036061 212 VGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKG-ARA------FLYPVVEKHD----L--LDFELLSVFHPTNEVIN 274 (284)
Q Consensus 212 v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~g-lr~------~lYp~v~~~d----l--~gfe~~~~~hP~~~v~n 274 (284)
.+. ..++..+++.+.+.|+|||.+++.+... ... ...+.....+ + .||++......+.++.+
T Consensus 77 l~~-~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~~~ 151 (224)
T smart00828 77 IHH-IKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDASLEIAN 151 (224)
T ss_pred HHh-CCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEECcHhHhh
Confidence 321 2567899999999999999999865310 000 0000111111 1 68999887776665544
No 52
>PRK04457 spermidine synthase; Provisional
Probab=99.44 E-value=5.7e-13 Score=121.92 Aligned_cols=147 Identities=17% Similarity=0.156 Sum_probs=101.5
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CCccEEE
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~fD~V~ 207 (284)
.++++||+||||. |..+.++++ ..++++|+++|+||++++.|++.+...+ ..++++++++|+.+..... +.||+|+
T Consensus 65 ~~~~~vL~IG~G~-G~l~~~l~~-~~p~~~v~~VEidp~vi~~A~~~f~~~~-~~~rv~v~~~Da~~~l~~~~~~yD~I~ 141 (262)
T PRK04457 65 PRPQHILQIGLGG-GSLAKFIYT-YLPDTRQTAVEINPQVIAVARNHFELPE-NGERFEVIEADGAEYIAVHRHSTDVIL 141 (262)
T ss_pred CCCCEEEEECCCH-hHHHHHHHH-hCCCCeEEEEECCHHHHHHHHHHcCCCC-CCCceEEEECCHHHHHHhCCCCCCEEE
Confidence 5678999999995 677777776 5789999999999999999999887655 3579999999998765433 4799999
Q ss_pred ecccc--cCChH-HHHHHHHHHHhhcCCCcEEEEEecCccccccCccCCCccC-CCcEEEEEecCCcceeeeEEEEee
Q 036061 208 LAALV--GMSKE-EKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKHDL-LDFELLSVFHPTNEVINSVVLVRK 281 (284)
Q Consensus 208 ~aa~v--~~~~~-~k~~il~~l~~~l~pGg~lv~r~~~glr~~lYp~v~~~dl-~gfe~~~~~hP~~~v~nsvi~~r~ 281 (284)
+++.- +++.. ...++++.+.+.|+|||++++.-... .-.++.. ...+ .-|.-....-|..+-.|.++++.+
T Consensus 142 ~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~--~~~~~~~-l~~l~~~F~~~~~~~~~~~~~N~v~~a~~ 216 (262)
T PRK04457 142 VDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR--DKRYDRY-LERLESSFEGRVLELPAESHGNVAVFAFK 216 (262)
T ss_pred EeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC--chhHHHH-HHHHHHhcCCcEEEEecCCCccEEEEEEC
Confidence 88653 11111 13689999999999999999853211 0011110 0111 235422223354444588888865
No 53
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.44 E-value=1.8e-12 Score=112.96 Aligned_cols=118 Identities=14% Similarity=0.181 Sum_probs=89.4
Q ss_pred hhHHHHHH--HHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEec
Q 036061 115 LANLEYRI--LDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCD 192 (284)
Q Consensus 115 l~~~E~~~--l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D 192 (284)
+.+.|... +......++.+|||+|||++. .++.+|+ ..++++|+++|+|+++++.|++++++.| + ++++++++|
T Consensus 23 ~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~-~~~~la~-~~~~~~V~~vD~s~~~~~~a~~n~~~~~-~-~~v~~~~~d 98 (196)
T PRK07402 23 LTKREVRLLLISQLRLEPDSVLWDIGAGTGT-IPVEAGL-LCPKGRVIAIERDEEVVNLIRRNCDRFG-V-KNVEVIEGS 98 (196)
T ss_pred CCHHHHHHHHHHhcCCCCCCEEEEeCCCCCH-HHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHHHHhC-C-CCeEEEECc
Confidence 44445443 223345678999999999854 5566776 4578999999999999999999999998 4 579999999
Q ss_pred cccccccC-CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 193 IMQVKEKL-GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 193 ~~~~~~~~-~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
+.+..... ..+|.+++... .+..++++.+.+.|+|||.+++...
T Consensus 99 ~~~~~~~~~~~~d~v~~~~~-----~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 99 APECLAQLAPAPDRVCIEGG-----RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred hHHHHhhCCCCCCEEEEECC-----cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 87643333 34788776532 3456899999999999999998763
No 54
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.2e-12 Score=115.45 Aligned_cols=125 Identities=18% Similarity=0.216 Sum_probs=98.1
Q ss_pred chhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEE
Q 036061 110 GNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFV 189 (284)
Q Consensus 110 ~ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~ 189 (284)
..|..--.+...++....++++.+||+||||. |+.+..||+ -..+|++||++++-.+.|+++++.+| +. +|.++
T Consensus 52 gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGs-GY~aAvla~---l~~~V~siEr~~~L~~~A~~~L~~lg-~~-nV~v~ 125 (209)
T COG2518 52 GQTISAPHMVARMLQLLELKPGDRVLEIGTGS-GYQAAVLAR---LVGRVVSIERIEELAEQARRNLETLG-YE-NVTVR 125 (209)
T ss_pred CceecCcHHHHHHHHHhCCCCCCeEEEECCCc-hHHHHHHHH---HhCeEEEEEEcHHHHHHHHHHHHHcC-CC-ceEEE
Confidence 44444445555555555789999999999996 788899999 44599999999999999999999999 44 49999
Q ss_pred EeccccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCccccc
Q 036061 190 TCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAF 247 (284)
Q Consensus 190 ~~D~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~glr~~ 247 (284)
++|+..--...+.||.|++.+.+. .+-+.+.+.|++||++++--+.+..+.
T Consensus 126 ~gDG~~G~~~~aPyD~I~Vtaaa~-------~vP~~Ll~QL~~gGrlv~PvG~~~~q~ 176 (209)
T COG2518 126 HGDGSKGWPEEAPYDRIIVTAAAP-------EVPEALLDQLKPGGRLVIPVGSGPAQR 176 (209)
T ss_pred ECCcccCCCCCCCcCEEEEeeccC-------CCCHHHHHhcccCCEEEEEEccCCcEE
Confidence 999987655667899999888762 122467778999999999776444443
No 55
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.43 E-value=1.5e-12 Score=117.38 Aligned_cols=100 Identities=16% Similarity=0.218 Sum_probs=80.3
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
.++.+|||+|||++ ..+..+++ .|.+|+++|+|+++++.|++... ..+|+++|+.+++...+.||+|+.
T Consensus 41 ~~~~~vLDiGcG~G-~~~~~l~~---~~~~v~~~D~s~~~l~~a~~~~~-------~~~~~~~d~~~~~~~~~~fD~V~s 109 (251)
T PRK10258 41 RKFTHVLDAGCGPG-WMSRYWRE---RGSQVTALDLSPPMLAQARQKDA-------ADHYLAGDIESLPLATATFDLAWS 109 (251)
T ss_pred cCCCeEEEeeCCCC-HHHHHHHH---cCCeEEEEECCHHHHHHHHhhCC-------CCCEEEcCcccCcCCCCcEEEEEE
Confidence 46789999999985 44566766 68999999999999999988531 357899999887765567999997
Q ss_pred cccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
...+.+. .+..+++.++.+.|+|||.+++.+
T Consensus 110 ~~~l~~~-~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 110 NLAVQWC-GNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred Cchhhhc-CCHHHHHHHHHHHcCCCeEEEEEe
Confidence 6554332 456789999999999999999876
No 56
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.43 E-value=4.8e-13 Score=118.64 Aligned_cols=113 Identities=18% Similarity=0.168 Sum_probs=86.3
Q ss_pred HHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc
Q 036061 119 EYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE 198 (284)
Q Consensus 119 E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~ 198 (284)
-..++....+.++.+||+||||+ |+.+..||+...+...|++||++++.++.|+++++++|. .+|+++++|+.....
T Consensus 61 ~a~~l~~L~l~pg~~VLeIGtGs-GY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~--~nv~~~~gdg~~g~~ 137 (209)
T PF01135_consen 61 VARMLEALDLKPGDRVLEIGTGS-GYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI--DNVEVVVGDGSEGWP 137 (209)
T ss_dssp HHHHHHHTTC-TT-EEEEES-TT-SHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT--HSEEEEES-GGGTTG
T ss_pred HHHHHHHHhcCCCCEEEEecCCC-cHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc--CceeEEEcchhhccc
Confidence 34444455678999999999997 788888988445667899999999999999999999994 589999999987555
Q ss_pred cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 199 KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 199 ~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
+.+.||.|++.+.+. ++-..+.+.|++||++++--.
T Consensus 138 ~~apfD~I~v~~a~~-------~ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 138 EEAPFDRIIVTAAVP-------EIPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GG-SEEEEEESSBBS-------S--HHHHHTEEEEEEEEEEES
T ss_pred cCCCcCEEEEeeccc-------hHHHHHHHhcCCCcEEEEEEc
Confidence 556899999887761 233567778999999998654
No 57
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.43 E-value=1e-12 Score=114.77 Aligned_cols=109 Identities=18% Similarity=0.194 Sum_probs=86.2
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc---cCCCccE
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE---KLGEYDC 205 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~---~~~~fD~ 205 (284)
..+.+|||||||+ |..+..+|+ ..|++.|+|+|+++++++.|++.++..| + .+++|+++|+.+++. +.+.+|.
T Consensus 15 ~~~~~ilDiGcG~-G~~~~~la~-~~p~~~v~gvD~~~~~l~~a~~~~~~~~-l-~ni~~i~~d~~~~~~~~~~~~~~d~ 90 (194)
T TIGR00091 15 NKAPLHLEIGCGK-GRFLIDMAK-QNPDKNFLGIEIHTPIVLAANNKANKLG-L-KNLHVLCGDANELLDKFFPDGSLSK 90 (194)
T ss_pred CCCceEEEeCCCc-cHHHHHHHH-hCCCCCEEEEEeeHHHHHHHHHHHHHhC-C-CCEEEEccCHHHHHHhhCCCCceeE
Confidence 4567999999997 566677777 4689999999999999999999999988 4 489999999987542 2246999
Q ss_pred EEecccccCChHH-------HHHHHHHHHhhcCCCcEEEEEec
Q 036061 206 IFLAALVGMSKEE-------KVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 206 V~~aa~v~~~~~~-------k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
|++..-..+.+.. ..++++.+++.|||||.|.+.+.
T Consensus 91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred EEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 9876433332221 15799999999999999998773
No 58
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.43 E-value=5.1e-12 Score=116.90 Aligned_cols=110 Identities=20% Similarity=0.271 Sum_probs=87.3
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
.++.+|||+|||+ |.-++.+|+ ..++++|+++|+|+++++.|+++++..| +.++++|+++|+.+.. ....||+|+.
T Consensus 120 ~~~~~vLDlG~Gs-G~i~~~la~-~~~~~~v~avDis~~al~~A~~n~~~~~-~~~~i~~~~~D~~~~~-~~~~fD~Iv~ 195 (284)
T TIGR03533 120 EPVKRILDLCTGS-GCIAIACAY-AFPEAEVDAVDISPDALAVAEINIERHG-LEDRVTLIQSDLFAAL-PGRKYDLIVS 195 (284)
T ss_pred CCCCEEEEEeCch-hHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECchhhcc-CCCCccEEEE
Confidence 4568999999997 566777887 4678999999999999999999999999 6789999999986533 2246999997
Q ss_pred cc-ccc------CC-----------------hHHHHHHHHHHHhhcCCCcEEEEEecC
Q 036061 209 AA-LVG------MS-----------------KEEKVKIIKHIRKYMKDGGVLLVRSAK 242 (284)
Q Consensus 209 aa-~v~------~~-----------------~~~k~~il~~l~~~l~pGg~lv~r~~~ 242 (284)
+. ++. +. .+...++++.+.++|+|||++++..++
T Consensus 196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 196 NPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN 253 (284)
T ss_pred CCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 63 110 00 023467899999999999999998764
No 59
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.42 E-value=1.9e-12 Score=117.12 Aligned_cols=107 Identities=22% Similarity=0.323 Sum_probs=84.4
Q ss_pred HHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCC
Q 036061 123 LDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGE 202 (284)
Q Consensus 123 l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~ 202 (284)
+......++.+|||||||++ ..+..+++ ..++++|+|+|+|+++++.|++.. .+++|+.+|+.++.. ...
T Consensus 24 l~~~~~~~~~~vLDiGcG~G-~~~~~la~-~~~~~~v~gvD~s~~~i~~a~~~~-------~~~~~~~~d~~~~~~-~~~ 93 (258)
T PRK01683 24 LARVPLENPRYVVDLGCGPG-NSTELLVE-RWPAARITGIDSSPAMLAEARSRL-------PDCQFVEADIASWQP-PQA 93 (258)
T ss_pred HhhCCCcCCCEEEEEcccCC-HHHHHHHH-HCCCCEEEEEECCHHHHHHHHHhC-------CCCeEEECchhccCC-CCC
Confidence 33445577899999999985 55567776 357899999999999999999852 368999999976543 348
Q ss_pred ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
||+|+.....++- .++.++++++.+.|+|||.+++..
T Consensus 94 fD~v~~~~~l~~~-~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 94 LDLIFANASLQWL-PDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred ccEEEEccChhhC-CCHHHHHHHHHHhcCCCcEEEEEC
Confidence 9999977655332 456789999999999999999864
No 60
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.42 E-value=1.9e-12 Score=116.56 Aligned_cols=111 Identities=17% Similarity=0.195 Sum_probs=93.0
Q ss_pred hcCCCCCCEEEEeccCCChhHHHHHHhhcCCC------cEEEEEeCChHHHHHHHHHHHhcCCCCCC--eEEEEeccccc
Q 036061 125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKS------THFDNFDIDEAANDVARQIVSSDIEFEKR--MKFVTCDIMQV 196 (284)
Q Consensus 125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g------~~V~~iDid~~ai~~Ar~~~~~~G~l~~~--I~f~~~D~~~~ 196 (284)
+.++..+.++||++||+ |..|..+.++ ... .+|+..||+|++++.+++...+.+ +.++ +.|+++|+.++
T Consensus 95 ~L~p~~~m~~lDvaGGT-GDiaFril~~-v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~-l~~~~~~~w~~~dAE~L 171 (296)
T KOG1540|consen 95 KLGPGKGMKVLDVAGGT-GDIAFRILRH-VKSQFGDRESKVTVLDINPHMLAVGKQRAKKRP-LKASSRVEWVEGDAEDL 171 (296)
T ss_pred ccCCCCCCeEEEecCCc-chhHHHHHHh-hccccCCCCceEEEEeCCHHHHHHHHHHHhhcC-CCcCCceEEEeCCcccC
Confidence 44567889999999997 7888888773 333 899999999999999999998877 5555 99999999999
Q ss_pred cccCCCccEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 197 KEKLGEYDCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 197 ~~~~~~fD~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+++...||...++..+ .+ .+..+.+++.+|+|||||++.+-.
T Consensus 172 pFdd~s~D~yTiafGIRN~--th~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 172 PFDDDSFDAYTIAFGIRNV--THIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred CCCCCcceeEEEecceecC--CCHHHHHHHHHHhcCCCcEEEEEE
Confidence 9998899998877655 33 456779999999999999988644
No 61
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.42 E-value=2.1e-12 Score=119.22 Aligned_cols=108 Identities=18% Similarity=0.253 Sum_probs=86.0
Q ss_pred CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc-
Q 036061 132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA- 210 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa- 210 (284)
.+|||+|||+ |.-++.+++ ..++++|+++|+|+++++.|+++++..| +.++++|+++|..+... ..+||+|+.+.
T Consensus 116 ~~vLDlG~Gs-G~i~l~la~-~~~~~~v~avDis~~al~~a~~n~~~~~-~~~~v~~~~~d~~~~~~-~~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGS-GCIALALAY-EFPNAEVIAVDISPDALAVAEENAEKNQ-LEHRVEFIQSNLFEPLA-GQKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccH-hHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECchhccCc-CCCccEEEECCC
Confidence 7999999997 566777887 4678999999999999999999999999 67789999999876332 23799998763
Q ss_pred cccC-------------C----------hHHHHHHHHHHHhhcCCCcEEEEEecCc
Q 036061 211 LVGM-------------S----------KEEKVKIIKHIRKYMKDGGVLLVRSAKG 243 (284)
Q Consensus 211 ~v~~-------------~----------~~~k~~il~~l~~~l~pGg~lv~r~~~g 243 (284)
++.. + .....++++++.++|+|||.+++..++.
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 1110 0 0245789999999999999999988643
No 62
>PRK08317 hypothetical protein; Provisional
Probab=99.41 E-value=3.7e-12 Score=112.10 Aligned_cols=111 Identities=19% Similarity=0.222 Sum_probs=87.5
Q ss_pred hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061 125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD 204 (284)
Q Consensus 125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD 204 (284)
.....++.+|||+|||+ |..+..++++..++++|+++|+|+.+++.|++..... ..+++|.++|+.+.+...+.||
T Consensus 14 ~~~~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~---~~~~~~~~~d~~~~~~~~~~~D 89 (241)
T PRK08317 14 LLAVQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL---GPNVEFVRGDADGLPFPDGSFD 89 (241)
T ss_pred HcCCCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC---CCceEEEecccccCCCCCCCce
Confidence 34567889999999998 5566777774336789999999999999999984333 3589999999987665556899
Q ss_pred EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+|+...... ...+...+++++.+.|+|||.+++..
T Consensus 90 ~v~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 90 AVRSDRVLQ-HLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred EEEEechhh-ccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 998765431 22567789999999999999998765
No 63
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.41 E-value=6.9e-13 Score=116.91 Aligned_cols=116 Identities=19% Similarity=0.261 Sum_probs=94.5
Q ss_pred hhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecc
Q 036061 114 KLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDI 193 (284)
Q Consensus 114 ~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~ 193 (284)
.-.+.-.+++.+.....+.+|.|+|||| |-++-+|++ ..|+++|+|||-|++|++.|++ ++. +.+|..+|+
T Consensus 14 eRtRPa~dLla~Vp~~~~~~v~DLGCGp-GnsTelL~~-RwP~A~i~GiDsS~~Mla~Aa~---rlp----~~~f~~aDl 84 (257)
T COG4106 14 ERTRPARDLLARVPLERPRRVVDLGCGP-GNSTELLAR-RWPDAVITGIDSSPAMLAKAAQ---RLP----DATFEEADL 84 (257)
T ss_pred hccCcHHHHHhhCCccccceeeecCCCC-CHHHHHHHH-hCCCCeEeeccCCHHHHHHHHH---hCC----CCceecccH
Confidence 3344456677777889999999999999 566666777 5899999999999999999977 544 689999999
Q ss_pred ccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 194 MQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 194 ~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.++..+ ..+|++|.++...|- ++-.++|.++...|+|||+|.+.-
T Consensus 85 ~~w~p~-~~~dllfaNAvlqWl-pdH~~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 85 RTWKPE-QPTDLLFANAVLQWL-PDHPELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred hhcCCC-Cccchhhhhhhhhhc-cccHHHHHHHHHhhCCCceEEEEC
Confidence 987754 479999987754443 566789999999999999999954
No 64
>PRK06922 hypothetical protein; Provisional
Probab=99.41 E-value=4.5e-12 Score=127.69 Aligned_cols=107 Identities=15% Similarity=0.258 Sum_probs=86.7
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc--ccCCCccEE
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK--EKLGEYDCI 206 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~--~~~~~fD~V 206 (284)
.++.+|||||||+ |..+..+|+ ..++.+|+|+|+|+.|++.|++.....| .+++++++|+.+++ ...+.||+|
T Consensus 417 ~~g~rVLDIGCGT-G~ls~~LA~-~~P~~kVtGIDIS~~MLe~Ararl~~~g---~~ie~I~gDa~dLp~~fedeSFDvV 491 (677)
T PRK06922 417 IKGDTIVDVGAGG-GVMLDMIEE-ETEDKRIYGIDISENVIDTLKKKKQNEG---RSWNVIKGDAINLSSSFEKESVDTI 491 (677)
T ss_pred cCCCEEEEeCCCC-CHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHhhhcC---CCeEEEEcchHhCccccCCCCEEEE
Confidence 4688999999998 555666776 4689999999999999999999876655 37899999998765 334579999
Q ss_pred Eeccccc------------CChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 207 FLAALVG------------MSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 207 ~~aa~v~------------~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+++...+ ++.++..++++++.+.|||||.+++.+
T Consensus 492 Vsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 492 VYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred EEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 8764332 124577899999999999999999976
No 65
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.40 E-value=7.2e-12 Score=109.63 Aligned_cols=106 Identities=19% Similarity=0.248 Sum_probs=83.5
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKS-THFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI 206 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V 206 (284)
..++.+|||+|||++ ..+..+++. .+. .+++++|+++.+++.+++... . ..+++++++|+.+.+...+.||+|
T Consensus 37 ~~~~~~vldiG~G~G-~~~~~~~~~-~~~~~~~~~iD~~~~~~~~~~~~~~-~---~~~i~~~~~d~~~~~~~~~~~D~i 110 (223)
T TIGR01934 37 VFKGQKVLDVACGTG-DLAIELAKS-APDRGKVTGVDFSSEMLEVAKKKSE-L---PLNIEFIQADAEALPFEDNSFDAV 110 (223)
T ss_pred cCCCCeEEEeCCCCC-hhHHHHHHh-cCCCceEEEEECCHHHHHHHHHHhc-c---CCCceEEecchhcCCCCCCcEEEE
Confidence 457899999999985 455666663 343 699999999999999999775 2 358999999998876555679999
Q ss_pred EecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+.....+ +..+...+++.+.+.|+|||.+++..
T Consensus 111 ~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 111 TIAFGLR-NVTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred EEeeeeC-CcccHHHHHHHHHHHcCCCcEEEEEE
Confidence 8755432 23567789999999999999998755
No 66
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.39 E-value=8e-12 Score=124.20 Aligned_cols=151 Identities=15% Similarity=0.180 Sum_probs=106.7
Q ss_pred hhHHHHHHhcCCCCccccc---ccCCCcchhhhhhHH----HHHHHHhcC-----------------------------C
Q 036061 85 LELEFATFFAKTPQPLNNL---NLFPYYGNYVKLANL----EYRILDENG-----------------------------V 128 (284)
Q Consensus 85 lE~~~a~~l~~~~~p~~~L---~~fpy~~ny~~l~~~----E~~~l~~~~-----------------------------~ 128 (284)
++....++.. ..|++++ ..|..++.++.-..+ |++.|.... .
T Consensus 59 ~~~~~~rr~~--~ePlqYI~G~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (506)
T PRK01544 59 FEKLLERRLK--HEPIAYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCN 136 (506)
T ss_pred HHHHHHHHHc--CCCHHHHhCcCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhcccccccccccccccccccccccc
Confidence 4444444443 4699998 456666666554433 555444321 1
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
.++.+|||+|||+ |..++.+|+ ..++++|+++|+|++|++.|++++...| +.++++++++|+.+... .+.||+|+.
T Consensus 137 ~~~~~VLDlG~Gs-G~iai~la~-~~p~~~v~avDis~~al~~A~~N~~~~~-l~~~v~~~~~D~~~~~~-~~~fDlIvs 212 (506)
T PRK01544 137 DKFLNILELGTGS-GCIAISLLC-ELPNANVIATDISLDAIEVAKSNAIKYE-VTDRIQIIHSNWFENIE-KQKFDFIVS 212 (506)
T ss_pred CCCCEEEEccCch-hHHHHHHHH-HCCCCeEEEEECCHHHHHHHHHHHHHcC-CccceeeeecchhhhCc-CCCccEEEE
Confidence 1356899999997 566677776 4688999999999999999999999998 67899999999865332 247999997
Q ss_pred cc-cccCC------------------------hHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 209 AA-LVGMS------------------------KEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 209 aa-~v~~~------------------------~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
+. ++... .+...++++++.++|+|||.+++..+
T Consensus 213 NPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 213 NPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred CCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 53 22110 02246688899999999999999764
No 67
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.39 E-value=4.8e-13 Score=120.86 Aligned_cols=102 Identities=19% Similarity=0.331 Sum_probs=84.4
Q ss_pred CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCC----CeEEEEeccccccccCCCccEE
Q 036061 131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEK----RMKFVTCDIMQVKEKLGEYDCI 206 (284)
Q Consensus 131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~----~I~f~~~D~~~~~~~~~~fD~V 206 (284)
+++||||||| +|+-+.-||+ .|++|+|||+++++++.|++-....+.++. +++|.+.|+.+.. +.||.|
T Consensus 90 g~~ilDvGCG-gGLLSepLAr---lga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaV 162 (282)
T KOG1270|consen 90 GMKILDVGCG-GGLLSEPLAR---LGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAV 162 (282)
T ss_pred CceEEEeccC-ccccchhhHh---hCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---ccccee
Confidence 5889999999 5898999999 899999999999999999999666664444 4889999987543 359999
Q ss_pred EecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+.+-.+ .+..++.++++.+.++|||||.+.+.+
T Consensus 163 vcsevl-eHV~dp~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 163 VCSEVL-EHVKDPQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred eeHHHH-HHHhCHHHHHHHHHHHhCCCCceEeee
Confidence 855332 234788999999999999999999977
No 68
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.39 E-value=5.9e-12 Score=110.99 Aligned_cols=103 Identities=15% Similarity=0.154 Sum_probs=81.7
Q ss_pred cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061 126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC 205 (284)
Q Consensus 126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~ 205 (284)
....++.+|||||||+ |+.+..+++ ...+|+++|+++++++.|++++++.| + ++++++++|..+.....+.||+
T Consensus 74 l~~~~~~~VLeiG~Gs-G~~t~~la~---~~~~v~~vd~~~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~~~~fD~ 147 (212)
T PRK00312 74 LELKPGDRVLEIGTGS-GYQAAVLAH---LVRRVFSVERIKTLQWEAKRRLKQLG-L-HNVSVRHGDGWKGWPAYAPFDR 147 (212)
T ss_pred cCCCCCCEEEEECCCc-cHHHHHHHH---HhCEEEEEeCCHHHHHHHHHHHHHCC-C-CceEEEECCcccCCCcCCCcCE
Confidence 3457889999999997 455567887 23589999999999999999999998 4 4599999998664334467999
Q ss_pred EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
|++.+.. ..+.+.+.+.|+|||++++-..
T Consensus 148 I~~~~~~-------~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 148 ILVTAAA-------PEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EEEccCc-------hhhhHHHHHhcCCCcEEEEEEc
Confidence 9987653 2345678899999999988654
No 69
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=2.4e-11 Score=112.27 Aligned_cols=104 Identities=22% Similarity=0.319 Sum_probs=84.6
Q ss_pred EEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc-c
Q 036061 133 KVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA-L 211 (284)
Q Consensus 133 ~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa-~ 211 (284)
+|||||||+ |.-|+.+|+ ..+.++|+++|+|++|++.|++++...| + .++.++.+|..+-.. ++||+|+++. +
T Consensus 113 ~ilDlGTGS-G~iai~la~-~~~~~~V~a~Dis~~Al~~A~~Na~~~~-l-~~~~~~~~dlf~~~~--~~fDlIVsNPPY 186 (280)
T COG2890 113 RILDLGTGS-GAIAIALAK-EGPDAEVIAVDISPDALALARENAERNG-L-VRVLVVQSDLFEPLR--GKFDLIVSNPPY 186 (280)
T ss_pred cEEEecCCh-HHHHHHHHh-hCcCCeEEEEECCHHHHHHHHHHHHHcC-C-ccEEEEeeecccccC--CceeEEEeCCCC
Confidence 899999997 677788887 6778899999999999999999999999 5 678888888765333 3899998775 4
Q ss_pred ccCC-----h------------------HHHHHHHHHHHhhcCCCcEEEEEecC
Q 036061 212 VGMS-----K------------------EEKVKIIKHIRKYMKDGGVLLVRSAK 242 (284)
Q Consensus 212 v~~~-----~------------------~~k~~il~~l~~~l~pGg~lv~r~~~ 242 (284)
+.-. + +-..++++++.++|+|||.+++..+.
T Consensus 187 ip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~ 240 (280)
T COG2890 187 IPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL 240 (280)
T ss_pred CCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC
Confidence 4221 1 12378999999999999999999873
No 70
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.38 E-value=1.2e-11 Score=109.41 Aligned_cols=104 Identities=21% Similarity=0.325 Sum_probs=84.9
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF 207 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~ 207 (284)
..++.+|||||||+ |..+..+++ .+.+|+|+|+|+++++.|++.+...+ ..++++|.++|+.+.+ +.||+|+
T Consensus 53 ~~~~~~vLDiGcG~-G~~~~~la~---~~~~v~gvD~s~~~i~~a~~~~~~~~-~~~~i~~~~~d~~~~~---~~fD~ii 124 (219)
T TIGR02021 53 PLKGKRVLDAGCGT-GLLSIELAK---RGAIVKAVDISEQMVQMARNRAQGRD-VAGNVEFEVNDLLSLC---GEFDIVV 124 (219)
T ss_pred CCCCCEEEEEeCCC-CHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEECChhhCC---CCcCEEE
Confidence 35689999999997 556677777 57899999999999999999998777 5668999999987654 6799998
Q ss_pred ecccc-cCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061 208 LAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVR 239 (284)
Q Consensus 208 ~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r 239 (284)
....+ ..+.++...++.++.+.+++|+++.+.
T Consensus 125 ~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 125 CMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred EhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 76544 555567788999999999888777664
No 71
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.38 E-value=7e-12 Score=114.87 Aligned_cols=128 Identities=17% Similarity=0.212 Sum_probs=88.7
Q ss_pred HHHhcCCCCCCEEEEeccCCChhHHHHHHhhcC--CCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc
Q 036061 122 ILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHL--KSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK 199 (284)
Q Consensus 122 ~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~--~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~ 199 (284)
.+.+....++.+|||||||++ ..+..+++... .+++|+|+|+|+.|++.|++. . .+++|.++|+.+++..
T Consensus 77 ~l~~~l~~~~~~vLDiGcG~G-~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~---~----~~~~~~~~d~~~lp~~ 148 (272)
T PRK11088 77 LLAERLDEKATALLDIGCGEG-YYTHALADALPEITTMQLFGLDISKVAIKYAAKR---Y----PQVTFCVASSHRLPFA 148 (272)
T ss_pred HHHHhcCCCCCeEEEECCcCC-HHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh---C----CCCeEEEeecccCCCc
Confidence 343433456689999999985 44555665222 135899999999999999873 2 3689999999988776
Q ss_pred CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec-----CccccccCccCCCc-----cCCCcEEEEE
Q 036061 200 LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA-----KGARAFLYPVVEKH-----DLLDFELLSV 265 (284)
Q Consensus 200 ~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~-----~glr~~lYp~v~~~-----dl~gfe~~~~ 265 (284)
.+.||+|+.. +. + ..++++.|.|||||.+++... ..+|..+|...... ...||+....
T Consensus 149 ~~sfD~I~~~-~~----~---~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~~~~~~~~~~~~~~~~gF~~~~~ 216 (272)
T PRK11088 149 DQSLDAIIRI-YA----P---CKAEELARVVKPGGIVITVTPGPRHLFELKGLIYDEVRLHAPEAEQLEGFELQHS 216 (272)
T ss_pred CCceeEEEEe-cC----C---CCHHHHHhhccCCCEEEEEeCCCcchHHHHHHhcccccccccchhhccCCCeeeE
Confidence 6789999843 22 1 235789999999999999874 23566676543221 2357875543
No 72
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.37 E-value=4.1e-12 Score=113.41 Aligned_cols=137 Identities=15% Similarity=0.200 Sum_probs=97.8
Q ss_pred HHHHhcCCCCcccccccCCCcchhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHH
Q 036061 89 FATFFAKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAA 168 (284)
Q Consensus 89 ~a~~l~~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~a 168 (284)
|-++=-++..||+.-...|.+..|... ....++.+||..|||. |..+++||+ .|.+|+|+|+|+.|
T Consensus 6 W~~~w~~~~~~w~~~~~~p~L~~~~~~----------l~~~~~~rvLvPgCG~-g~D~~~La~---~G~~VvGvDls~~A 71 (218)
T PF05724_consen 6 WEERWQEGQTPWDQGEPNPALVEYLDS----------LALKPGGRVLVPGCGK-GYDMLWLAE---QGHDVVGVDLSPTA 71 (218)
T ss_dssp HHHHHHTT--TT--TTSTHHHHHHHHH----------HTTSTSEEEEETTTTT-SCHHHHHHH---TTEEEEEEES-HHH
T ss_pred HHHHHhcCCCCCCCCCCCHHHHHHHHh----------cCCCCCCeEEEeCCCC-hHHHHHHHH---CCCeEEEEecCHHH
Confidence 333334456788776777776555432 1346778999999996 799999999 79999999999999
Q ss_pred HHHHHHHHHh------cCC----CCCCeEEEEeccccccccC-CCccEEEec-ccccCChHHHHHHHHHHHhhcCCCcEE
Q 036061 169 NDVARQIVSS------DIE----FEKRMKFVTCDIMQVKEKL-GEYDCIFLA-ALVGMSKEEKVKIIKHIRKYMKDGGVL 236 (284)
Q Consensus 169 i~~Ar~~~~~------~G~----l~~~I~f~~~D~~~~~~~~-~~fD~V~~a-a~v~~~~~~k~~il~~l~~~l~pGg~l 236 (284)
++.|.+-... .+. -..+|++.+||..++.... +.||+||-- +++.++++.+.++.+++.+.|+|||.+
T Consensus 72 i~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~ 151 (218)
T PF05724_consen 72 IEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRG 151 (218)
T ss_dssp HHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEE
T ss_pred HHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcE
Confidence 9998543221 010 1357899999999877654 479999955 356788999999999999999999994
Q ss_pred EEE
Q 036061 237 LVR 239 (284)
Q Consensus 237 v~r 239 (284)
++-
T Consensus 152 lLi 154 (218)
T PF05724_consen 152 LLI 154 (218)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 73
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.36 E-value=3.1e-13 Score=104.61 Aligned_cols=97 Identities=16% Similarity=0.320 Sum_probs=62.3
Q ss_pred EEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC--CCccEEEecccc
Q 036061 135 AFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL--GEYDCIFLAALV 212 (284)
Q Consensus 135 L~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~--~~fD~V~~aa~v 212 (284)
||||||++-++...+++ .++.++|++|+|+.|++.|++.+...+. ...+....+..+..... +.||+|+....+
T Consensus 1 LdiGcG~G~~~~~l~~~--~~~~~~~~~D~s~~~l~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEE--LPDARYTGVDISPSMLERARERLAELGN--DNFERLRFDVLDLFDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHH--C-EEEEEEEESSSSTTSTTCCCHHHCT-----EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHhhhcCC--cceeEEEeecCChhhcccccccceehhhhhH
Confidence 79999986666555554 5899999999999999999999988763 44555555554433322 389999976554
Q ss_pred cCChHHHHHHHHHHHhhcCCCcEE
Q 036061 213 GMSKEEKVKIIKHIRKYMKDGGVL 236 (284)
Q Consensus 213 ~~~~~~k~~il~~l~~~l~pGg~l 236 (284)
++- +++..+++++++.|+|||.|
T Consensus 77 ~~l-~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HHL-EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S---S-HHHHHHHHTTT-TSS-EE
T ss_pred hhh-hhHHHHHHHHHHHcCCCCCC
Confidence 333 77889999999999999986
No 74
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.36 E-value=1.1e-11 Score=112.37 Aligned_cols=111 Identities=24% Similarity=0.305 Sum_probs=83.2
Q ss_pred hhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEec
Q 036061 113 VKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCD 192 (284)
Q Consensus 113 ~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D 192 (284)
....+.-...+... ..++.+|||||||+ |..++.+++ ....+|+++|+|+.+++.|+++++..+ +.+++++..+|
T Consensus 103 h~tt~~~l~~l~~~-~~~~~~VLDiGcGs-G~l~i~~~~--~g~~~v~giDis~~~l~~A~~n~~~~~-~~~~~~~~~~~ 177 (250)
T PRK00517 103 HPTTRLCLEALEKL-VLPGKTVLDVGCGS-GILAIAAAK--LGAKKVLAVDIDPQAVEAARENAELNG-VELNVYLPQGD 177 (250)
T ss_pred CHHHHHHHHHHHhh-cCCCCEEEEeCCcH-HHHHHHHHH--cCCCeEEEEECCHHHHHHHHHHHHHcC-CCceEEEccCC
Confidence 34444444444332 46789999999998 777777776 223359999999999999999999988 56666665544
Q ss_pred cccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 193 IMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 193 ~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
. .||+|+.+.. .+....+++++.+.|+|||.+++..
T Consensus 178 ~--------~fD~Vvani~----~~~~~~l~~~~~~~LkpgG~lilsg 213 (250)
T PRK00517 178 L--------KADVIVANIL----ANPLLELAPDLARLLKPGGRLILSG 213 (250)
T ss_pred C--------CcCEEEEcCc----HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2 6999986543 2556688999999999999999864
No 75
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.36 E-value=8.7e-12 Score=115.43 Aligned_cols=118 Identities=24% Similarity=0.267 Sum_probs=89.3
Q ss_pred hhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe
Q 036061 112 YVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC 191 (284)
Q Consensus 112 y~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~ 191 (284)
+....++=...+.+. ..++++|||+|||+ |..++.+++ ....+|+++|+|+.|++.|++++...+ +..++++..+
T Consensus 142 ~h~tt~l~l~~l~~~-~~~g~~VLDvGcGs-G~lai~aa~--~g~~~V~avDid~~al~~a~~n~~~n~-~~~~~~~~~~ 216 (288)
T TIGR00406 142 THPTTSLCLEWLEDL-DLKDKNVIDVGCGS-GILSIAALK--LGAAKVVGIDIDPLAVESARKNAELNQ-VSDRLQVKLI 216 (288)
T ss_pred CCHHHHHHHHHHHhh-cCCCCEEEEeCCCh-hHHHHHHHH--cCCCeEEEEECCHHHHHHHHHHHHHcC-CCcceEEEec
Confidence 334444433334333 35779999999998 666777777 334589999999999999999999988 6788888888
Q ss_pred ccccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 192 DIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 192 D~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
|.... ..+.||+|+.+... ....+++.++.+.|+|||.+++..
T Consensus 217 ~~~~~--~~~~fDlVvan~~~----~~l~~ll~~~~~~LkpgG~li~sg 259 (288)
T TIGR00406 217 YLEQP--IEGKADVIVANILA----EVIKELYPQFSRLVKPGGWLILSG 259 (288)
T ss_pred ccccc--cCCCceEEEEecCH----HHHHHHHHHHHHHcCCCcEEEEEe
Confidence 74332 23579999876543 556789999999999999998864
No 76
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.36 E-value=1.5e-11 Score=115.79 Aligned_cols=106 Identities=19% Similarity=0.228 Sum_probs=84.0
Q ss_pred hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061 125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD 204 (284)
Q Consensus 125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD 204 (284)
...++++.+|||||||+ |..+..+|+......+|+++|+|+++++.|++.+++.| . ++++++++|+.+.....+.||
T Consensus 75 ~L~i~~g~~VLDIG~Gt-G~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g-~-~nV~~i~gD~~~~~~~~~~fD 151 (322)
T PRK13943 75 WVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG-I-ENVIFVCGDGYYGVPEFAPYD 151 (322)
T ss_pred hcCCCCCCEEEEEeCCc-cHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEeCChhhcccccCCcc
Confidence 33567889999999997 66777788733334589999999999999999999999 4 679999999877665556899
Q ss_pred EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+|+++..+ . .+...+.+.|+|||++++-.
T Consensus 152 ~Ii~~~g~----~---~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 152 VIFVTVGV----D---EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred EEEECCch----H---HhHHHHHHhcCCCCEEEEEe
Confidence 99987554 1 23456778999999988854
No 77
>PRK04266 fibrillarin; Provisional
Probab=99.36 E-value=2.4e-11 Score=109.07 Aligned_cols=146 Identities=16% Similarity=0.184 Sum_probs=96.4
Q ss_pred cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc--cc-CCC
Q 036061 126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK--EK-LGE 202 (284)
Q Consensus 126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~--~~-~~~ 202 (284)
+.+.++.+|||+|||++ ..+..+|+. .++.+|+++|++++|++..++++++. .++.++.+|+.+.. .+ ...
T Consensus 68 l~i~~g~~VlD~G~G~G-~~~~~la~~-v~~g~V~avD~~~~ml~~l~~~a~~~----~nv~~i~~D~~~~~~~~~l~~~ 141 (226)
T PRK04266 68 FPIKKGSKVLYLGAASG-TTVSHVSDI-VEEGVVYAVEFAPRPMRELLEVAEER----KNIIPILADARKPERYAHVVEK 141 (226)
T ss_pred CCCCCCCEEEEEccCCC-HHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHhhhc----CCcEEEECCCCCcchhhhcccc
Confidence 56688999999999985 556777773 34679999999999999888877653 47899999987521 11 235
Q ss_pred ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCc-c--c---cccCccCCCccC--CCcEEEEEecCCcce-e
Q 036061 203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKG-A--R---AFLYPVVEKHDL--LDFELLSVFHPTNEV-I 273 (284)
Q Consensus 203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~g-l--r---~~lYp~v~~~dl--~gfe~~~~~hP~~~v-~ 273 (284)
||+||.... ++.+...+++++.+.|||||.+++.-.+. . + .-.|... ...+ .||++..+.....-. .
T Consensus 142 ~D~i~~d~~---~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~-~~~l~~aGF~~i~~~~l~p~~~~ 217 (226)
T PRK04266 142 VDVIYQDVA---QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEE-IRKLEEGGFEILEVVDLEPYHKD 217 (226)
T ss_pred CCEEEECCC---ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHH-HHHHHHcCCeEEEEEcCCCCcCC
Confidence 999985421 12234567899999999999999842211 0 0 0011100 1122 599999887754332 3
Q ss_pred eeEEEEee
Q 036061 274 NSVVLVRK 281 (284)
Q Consensus 274 nsvi~~r~ 281 (284)
+-.+++|+
T Consensus 218 h~~~v~~~ 225 (226)
T PRK04266 218 HAAVVARK 225 (226)
T ss_pred eEEEEEEc
Confidence 44566664
No 78
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.35 E-value=7.4e-12 Score=114.65 Aligned_cols=116 Identities=19% Similarity=0.312 Sum_probs=86.8
Q ss_pred CCCCEEEEeccCCCh--hH-HHHHHhhcC----CCcEEEEEeCChHHHHHHHHHHH------hc------------C---
Q 036061 129 VNPKKVAFVGSGPMP--LT-SIVMAKNHL----KSTHFDNFDIDEAANDVARQIVS------SD------------I--- 180 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp--~t-ai~LA~~~~----~g~~V~~iDid~~ai~~Ar~~~~------~~------------G--- 180 (284)
.++.+|+++|||++- +| |+.+++... .+.+|+|+|+|++|++.|++.+- .. +
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 456899999999752 12 445555211 25799999999999999998541 00 0
Q ss_pred ----CCCCCeEEEEeccccccccCCCccEEEecc-cccCChHHHHHHHHHHHhhcCCCcEEEEEecCcc
Q 036061 181 ----EFEKRMKFVTCDIMQVKEKLGEYDCIFLAA-LVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGA 244 (284)
Q Consensus 181 ----~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa-~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~gl 244 (284)
.+.++|+|.++|+.+.+...+.||+|+... +...+.+.+.++++++++.|+|||.|++-....+
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E~~ 246 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSESL 246 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECcccC
Confidence 023579999999988665567899999743 3466778899999999999999999999776554
No 79
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.33 E-value=1.5e-11 Score=107.52 Aligned_cols=135 Identities=17% Similarity=0.202 Sum_probs=88.6
Q ss_pred HHhcCCCCcccccccCCCc-chhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHH
Q 036061 91 TFFAKTPQPLNNLNLFPYY-GNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAAN 169 (284)
Q Consensus 91 ~~l~~~~~p~~~L~~fpy~-~ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai 169 (284)
++.++.++||. |- .-|+.- +....++.......-.+++++|||.+-+| ..||. ..-+++++|+|+.|+
T Consensus 10 ~~~la~~DPW~------~~~~~YE~~-K~~~~l~aaLp~~ry~~alEvGCs~G~lT-~~LA~---rCd~LlavDis~~Al 78 (201)
T PF05401_consen 10 NRELANDDPWG------FETSWYERR-KYRATLLAALPRRRYRRALEVGCSIGVLT-ERLAP---RCDRLLAVDISPRAL 78 (201)
T ss_dssp HHHHTSSSGGG------TTT-HHHHH-HHHHHHHHHHTTSSEEEEEEE--TTSHHH-HHHGG---GEEEEEEEES-HHHH
T ss_pred HHHhCCCCCCC------CCCCHHHHH-HHHHHHHHhcCccccceeEecCCCccHHH-HHHHH---hhCceEEEeCCHHHH
Confidence 34456799995 22 223332 21111111224455589999999975554 55777 457899999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecccc-cCC-hHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 170 DVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALV-GMS-KEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 170 ~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~v-~~~-~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
+.|++..+.. .+|+|+++|+.+.. +.+.||+|+++... -++ .++...+++.+.+.|+|||.+|+-+.
T Consensus 79 ~~Ar~Rl~~~----~~V~~~~~dvp~~~-P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 79 ARARERLAGL----PHVEWIQADVPEFW-PEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp HHHHHHTTT-----SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHhcCCC----CCeEEEECcCCCCC-CCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 9999976643 47999999997643 34689999877533 343 46788899999999999999999774
No 80
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.33 E-value=1.5e-11 Score=108.49 Aligned_cols=103 Identities=17% Similarity=0.277 Sum_probs=82.5
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
..+.+|||||||++. .+..+++ ..+..+|+++|+|+++++.+++... .+++++++|+.+.+...+.||+|+.
T Consensus 33 ~~~~~vLDlG~G~G~-~~~~l~~-~~~~~~~~~~D~~~~~~~~~~~~~~------~~~~~~~~d~~~~~~~~~~fD~vi~ 104 (240)
T TIGR02072 33 FIPASVLDIGCGTGY-LTRALLK-RFPQAEFIALDISAGMLAQAKTKLS------ENVQFICGDAEKLPLEDSSFDLIVS 104 (240)
T ss_pred CCCCeEEEECCCccH-HHHHHHH-hCCCCcEEEEeChHHHHHHHHHhcC------CCCeEEecchhhCCCCCCceeEEEE
Confidence 456899999999854 5566676 4677889999999999999987432 3789999999887755567999997
Q ss_pred cccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
....++ ..+..++++++.+.|+|||.+++..
T Consensus 105 ~~~l~~-~~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 105 NLALQW-CDDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred hhhhhh-ccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 655433 2456789999999999999999876
No 81
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.33 E-value=2e-11 Score=104.87 Aligned_cols=103 Identities=18% Similarity=0.302 Sum_probs=80.3
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
.++++|||+|||++ .-++.+++ .+.+|+++|+|+++++.|+++++..+. +++++++|+.+.. .+.||+|+.
T Consensus 18 ~~~~~vLdlG~G~G-~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~--~~~fD~Vi~ 88 (179)
T TIGR00537 18 LKPDDVLEIGAGTG-LVAIRLKG---KGKCILTTDINPFAVKELRENAKLNNV---GLDVVMTDLFKGV--RGKFDVILF 88 (179)
T ss_pred cCCCeEEEeCCChh-HHHHHHHh---cCCEEEEEECCHHHHHHHHHHHHHcCC---ceEEEEccccccc--CCcccEEEE
Confidence 56689999999975 55666776 345999999999999999999998873 6899999987644 347999997
Q ss_pred cccc-cCC-------------------hHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 209 AALV-GMS-------------------KEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 209 aa~v-~~~-------------------~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+... ..+ .....++++++.++|+|||.+++..
T Consensus 89 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 89 NPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred CCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 6422 111 1124678999999999999988865
No 82
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.33 E-value=3.2e-11 Score=113.48 Aligned_cols=107 Identities=15% Similarity=0.179 Sum_probs=83.7
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF 207 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~ 207 (284)
..++++|||||||+ |.-++.+++ . ....|+|||+|+.++..++...+..+ ...+++|+.+|+.+++. .+.||+|+
T Consensus 120 ~l~g~~VLDIGCG~-G~~~~~la~-~-g~~~V~GiD~S~~~l~q~~a~~~~~~-~~~~i~~~~~d~e~lp~-~~~FD~V~ 194 (322)
T PRK15068 120 PLKGRTVLDVGCGN-GYHMWRMLG-A-GAKLVVGIDPSQLFLCQFEAVRKLLG-NDQRAHLLPLGIEQLPA-LKAFDTVF 194 (322)
T ss_pred CCCCCEEEEeccCC-cHHHHHHHH-c-CCCEEEEEcCCHHHHHHHHHHHHhcC-CCCCeEEEeCCHHHCCC-cCCcCEEE
Confidence 45789999999997 677778887 2 22469999999999987766555554 34689999999988776 56799999
Q ss_pred ecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
....+. +..+...+++++++.|+|||.+++.+
T Consensus 195 s~~vl~-H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 195 SMGVLY-HRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred ECChhh-ccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 765442 23566789999999999999999864
No 83
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=1.5e-11 Score=111.00 Aligned_cols=149 Identities=22% Similarity=0.319 Sum_probs=111.4
Q ss_pred hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061 125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD 204 (284)
Q Consensus 125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD 204 (284)
..++.++++|++.|.|.+-+| .+||....+.++|+++|+.++..+.|++|++..| +.++|++..+|+.+..... .||
T Consensus 89 ~~gi~pg~rVlEAGtGSG~lt-~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~-l~d~v~~~~~Dv~~~~~~~-~vD 165 (256)
T COG2519 89 RLGISPGSRVLEAGTGSGALT-AYLARAVGPEGHVTTYEIREDFAKTARENLSEFG-LGDRVTLKLGDVREGIDEE-DVD 165 (256)
T ss_pred HcCCCCCCEEEEcccCchHHH-HHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc-cccceEEEecccccccccc-ccC
Confidence 447899999999999986555 5577656788999999999999999999999999 7889999999999866654 899
Q ss_pred EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec---------CccccccCccCCCccC--CCcEEEEE-ecCCcc-
Q 036061 205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA---------KGARAFLYPVVEKHDL--LDFELLSV-FHPTNE- 271 (284)
Q Consensus 205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~---------~glr~~lYp~v~~~dl--~gfe~~~~-~hP~~~- 271 (284)
+||++- ++..++++++.+.|+|||.+++=++ ..++..-|-..+.-++ +.|++... +.|...
T Consensus 166 av~LDm------p~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~~E~l~R~~~v~~~~~RP~~~~ 239 (256)
T COG2519 166 AVFLDL------PDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEAVETLVRRWEVRKEATRPETRM 239 (256)
T ss_pred EEEEcC------CChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchhhheeeeheeeecccccCccccc
Confidence 999862 5678899999999999999998663 2333331221121122 34444332 567754
Q ss_pred eeee--EEEEeec
Q 036061 272 VINS--VVLVRKP 282 (284)
Q Consensus 272 v~ns--vi~~r~~ 282 (284)
+-.| ++++||.
T Consensus 240 v~HTgyivf~R~~ 252 (256)
T COG2519 240 VGHTGYIVFARKL 252 (256)
T ss_pred ccceeEEEEEeec
Confidence 4455 7778874
No 84
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.33 E-value=1.8e-11 Score=117.79 Aligned_cols=106 Identities=13% Similarity=0.171 Sum_probs=83.6
Q ss_pred HhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCc
Q 036061 124 DENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEY 203 (284)
Q Consensus 124 ~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~f 203 (284)
......++.+|||||||+++ .++.+|+ ..|++|+|+|+|+++++.|++.++ + + .+++..+|..++ .+.|
T Consensus 161 ~~l~l~~g~rVLDIGcG~G~-~a~~la~--~~g~~V~giDlS~~~l~~A~~~~~--~-l--~v~~~~~D~~~l---~~~f 229 (383)
T PRK11705 161 RKLQLKPGMRVLDIGCGWGG-LARYAAE--HYGVSVVGVTISAEQQKLAQERCA--G-L--PVEIRLQDYRDL---NGQF 229 (383)
T ss_pred HHhCCCCCCEEEEeCCCccH-HHHHHHH--HCCCEEEEEeCCHHHHHHHHHHhc--c-C--eEEEEECchhhc---CCCC
Confidence 34456788999999999855 5577777 358999999999999999999874 4 2 489999998664 2579
Q ss_pred cEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 204 DCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 204 D~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
|.|+..... +....+...+++.+.+.|||||.+++..
T Consensus 230 D~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 230 DRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred CEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 999855433 3344666789999999999999999865
No 85
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.32 E-value=4.8e-11 Score=105.59 Aligned_cols=104 Identities=16% Similarity=0.281 Sum_probs=82.2
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI 206 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V 206 (284)
+..++.+|||||||+ |..+..+++ .+.+|+++|+|+.+++.|++.+...+ ..++++|.++|.. ...+.||+|
T Consensus 60 ~~~~~~~vLDvGcG~-G~~~~~l~~---~~~~v~~~D~s~~~i~~a~~~~~~~~-~~~~i~~~~~d~~---~~~~~fD~v 131 (230)
T PRK07580 60 GDLTGLRILDAGCGV-GSLSIPLAR---RGAKVVASDISPQMVEEARERAPEAG-LAGNITFEVGDLE---SLLGRFDTV 131 (230)
T ss_pred CCCCCCEEEEEeCCC-CHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHhcC-CccCcEEEEcCch---hccCCcCEE
Confidence 346778999999997 456677887 56789999999999999999998888 5679999999943 234679999
Q ss_pred Eecccc-cCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061 207 FLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLV 238 (284)
Q Consensus 207 ~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~ 238 (284)
+....+ +++.+....+++.+.+.+++|+++.+
T Consensus 132 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 132 VCLDVLIHYPQEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred EEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 876544 55667778899999988766565554
No 86
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.32 E-value=2.6e-11 Score=110.90 Aligned_cols=111 Identities=17% Similarity=0.167 Sum_probs=87.3
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI 206 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V 206 (284)
.+.++.+|||+||||++.|.. +|+....++.|+++|+++.+++.+++++++.| + .+|+++++|+.+.....+.||.|
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~-la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g-~-~~v~~~~~D~~~~~~~~~~fD~V 144 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQ-ISALMKNEGAIVANEFSKSRTKVLIANINRCG-V-LNVAVTNFDGRVFGAAVPKFDAI 144 (264)
T ss_pred CCCCcCEEEEECCCchHHHHH-HHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-C-CcEEEecCCHHHhhhhccCCCEE
Confidence 457889999999999877755 55534445799999999999999999999999 4 46999999998765545579999
Q ss_pred Eecccc-cC-------------ChH-------HHHHHHHHHHhhcCCCcEEEEEe
Q 036061 207 FLAALV-GM-------------SKE-------EKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 207 ~~aa~v-~~-------------~~~-------~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
++++-- +. +.+ ...++|++..+.+||||+|++.+
T Consensus 145 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 145 LLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred EEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 987521 11 111 12569999999999999999876
No 87
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.32 E-value=2.8e-11 Score=116.92 Aligned_cols=141 Identities=17% Similarity=0.168 Sum_probs=99.4
Q ss_pred CCccccc---ccCCCcchhhhh----hHHHHHHHHhcC---CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCCh
Q 036061 97 PQPLNNL---NLFPYYGNYVKL----ANLEYRILDENG---VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDE 166 (284)
Q Consensus 97 ~~p~~~L---~~fpy~~ny~~l----~~~E~~~l~~~~---~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~ 166 (284)
..|++++ ..|..++.++.- -+.|.+.+.+.. ..++.+|||+|||+ |.-++.+++ ..++++|+++|+|+
T Consensus 208 gePlqYIlG~~~F~G~~f~V~p~vLIPRpeTE~LVe~aL~~l~~~~rVLDLGcGS-G~IaiaLA~-~~p~a~VtAVDiS~ 285 (423)
T PRK14966 208 GEPVAYILGVREFYGRRFAVNPNVLIPRPETEHLVEAVLARLPENGRVWDLGTGS-GAVAVTVAL-ERPDAFVRASDISP 285 (423)
T ss_pred CCCceeEeeeeeecCcEEEeCCCccCCCccHHHHHHHhhhccCCCCEEEEEeChh-hHHHHHHHH-hCCCCEEEEEECCH
Confidence 4699987 345444444322 233555554432 24567999999997 555677776 46889999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCeEEEEeccccccc-cCCCccEEEecc-cccCC-----h------------------HHHHH
Q 036061 167 AANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-KLGEYDCIFLAA-LVGMS-----K------------------EEKVK 221 (284)
Q Consensus 167 ~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-~~~~fD~V~~aa-~v~~~-----~------------------~~k~~ 221 (284)
+|++.|+++++..|. +++|+++|..+... ..++||+|+.+. ++... . +-..+
T Consensus 286 ~ALe~AreNa~~~g~---rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~ 362 (423)
T PRK14966 286 PALETARKNAADLGA---RVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRT 362 (423)
T ss_pred HHHHHHHHHHHHcCC---cEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHH
Confidence 999999999998873 89999999865322 224699999865 22110 0 11357
Q ss_pred HHHHHHhhcCCCcEEEEEecC
Q 036061 222 IIKHIRKYMKDGGVLLVRSAK 242 (284)
Q Consensus 222 il~~l~~~l~pGg~lv~r~~~ 242 (284)
+++++.++|+|||.+++..+.
T Consensus 363 Ii~~a~~~LkpgG~lilEiG~ 383 (423)
T PRK14966 363 LAQGAPDRLAEGGFLLLEHGF 383 (423)
T ss_pred HHHHHHHhcCCCcEEEEEECc
Confidence 888889999999999987753
No 88
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.31 E-value=3.1e-11 Score=115.84 Aligned_cols=107 Identities=14% Similarity=0.206 Sum_probs=84.8
Q ss_pred CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCC--CCeEEEEeccccccccCCCccEEE
Q 036061 130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFE--KRMKFVTCDIMQVKEKLGEYDCIF 207 (284)
Q Consensus 130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~--~~I~f~~~D~~~~~~~~~~fD~V~ 207 (284)
.+.+|||+|||+ |.-++.+++ ..|+++|+++|+|+.|++.|+++++..+ .+ .+++|+.+|+.+... ...||+|+
T Consensus 228 ~~~~VLDLGCGt-Gvi~i~la~-~~P~~~V~~vD~S~~Av~~A~~N~~~n~-~~~~~~v~~~~~D~l~~~~-~~~fDlIl 303 (378)
T PRK15001 228 LEGEIVDLGCGN-GVIGLTLLD-KNPQAKVVFVDESPMAVASSRLNVETNM-PEALDRCEFMINNALSGVE-PFRFNAVL 303 (378)
T ss_pred cCCeEEEEeccc-cHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-cccCceEEEEEccccccCC-CCCEEEEE
Confidence 346999999998 556677777 4789999999999999999999998876 33 479999999865322 24799999
Q ss_pred ecccc--c--CChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 208 LAALV--G--MSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 208 ~aa~v--~--~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.+... + .+.....+++.+..++|+|||.+.+..
T Consensus 304 sNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 304 CNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred ECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 87532 2 233456789999999999999988874
No 89
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.31 E-value=2.2e-11 Score=107.46 Aligned_cols=99 Identities=10% Similarity=0.201 Sum_probs=78.3
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF 207 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~ 207 (284)
..++.+|||||||+ |..+..|++ ..++.+++|||+|++|++.|++.. .++++.++|+.+ +...+.||+|+
T Consensus 41 ~~~~~~VLDiGCG~-G~~~~~L~~-~~~~~~v~giDiS~~~l~~A~~~~-------~~~~~~~~d~~~-~~~~~sfD~V~ 110 (204)
T TIGR03587 41 LPKIASILELGANI-GMNLAALKR-LLPFKHIYGVEINEYAVEKAKAYL-------PNINIIQGSLFD-PFKDNFFDLVL 110 (204)
T ss_pred cCCCCcEEEEecCC-CHHHHHHHH-hCCCCeEEEEECCHHHHHHHHhhC-------CCCcEEEeeccC-CCCCCCEEEEE
Confidence 35778999999997 666777776 357899999999999999998842 246888999887 55556899999
Q ss_pred ecccc-cCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061 208 LAALV-GMSKEEKVKIIKHIRKYMKDGGVLLV 238 (284)
Q Consensus 208 ~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~ 238 (284)
....+ ++++++..++++++.+.++ +.+++
T Consensus 111 ~~~vL~hl~p~~~~~~l~el~r~~~--~~v~i 140 (204)
T TIGR03587 111 TKGVLIHINPDNLPTAYRELYRCSN--RYILI 140 (204)
T ss_pred ECChhhhCCHHHHHHHHHHHHhhcC--cEEEE
Confidence 76644 6677788999999999973 45444
No 90
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.30 E-value=1.5e-11 Score=109.35 Aligned_cols=107 Identities=16% Similarity=0.306 Sum_probs=96.4
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc------CCC
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK------LGE 202 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~------~~~ 202 (284)
-.+++.++||.=+ |+|++.+|.+...+++|+++|+|+++.+++.++.+..| +.++|+|++|++.+.+.. -+.
T Consensus 72 ~~ak~~lelGvfT-GySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag-v~~KI~~i~g~a~esLd~l~~~~~~~t 149 (237)
T KOG1663|consen 72 LNAKRTLELGVFT-GYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG-VDHKITFIEGPALESLDELLADGESGT 149 (237)
T ss_pred hCCceEEEEeccc-CHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc-ccceeeeeecchhhhHHHHHhcCCCCc
Confidence 4789999999975 89999999977789999999999999999999999999 799999999999875432 246
Q ss_pred ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
||++|+++.. ..+...++++.+.+|+||+|++.+.
T Consensus 150 fDfaFvDadK----~nY~~y~e~~l~Llr~GGvi~~DNv 184 (237)
T KOG1663|consen 150 FDFAFVDADK----DNYSNYYERLLRLLRVGGVIVVDNV 184 (237)
T ss_pred eeEEEEccch----HHHHHHHHHHHhhcccccEEEEecc
Confidence 9999999885 8888999999999999999999984
No 91
>PRK14967 putative methyltransferase; Provisional
Probab=99.30 E-value=4e-11 Score=106.70 Aligned_cols=108 Identities=15% Similarity=0.137 Sum_probs=82.2
Q ss_pred hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061 125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD 204 (284)
Q Consensus 125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD 204 (284)
.....++.+|||+|||+ |.-++.+++ ....+|+++|+|+.+++.|+++++..|. +++++++|..+.. ..+.||
T Consensus 31 ~~~~~~~~~vLDlGcG~-G~~~~~la~--~~~~~v~~vD~s~~~l~~a~~n~~~~~~---~~~~~~~d~~~~~-~~~~fD 103 (223)
T PRK14967 31 AEGLGPGRRVLDLCTGS-GALAVAAAA--AGAGSVTAVDISRRAVRSARLNALLAGV---DVDVRRGDWARAV-EFRPFD 103 (223)
T ss_pred hcccCCCCeEEEecCCH-HHHHHHHHH--cCCCeEEEEECCHHHHHHHHHHHHHhCC---eeEEEECchhhhc-cCCCee
Confidence 34456778999999998 666777887 2234999999999999999999998883 6899999987643 235799
Q ss_pred EEEecc-cccCCh-------------------HHHHHHHHHHHhhcCCCcEEEEE
Q 036061 205 CIFLAA-LVGMSK-------------------EEKVKIIKHIRKYMKDGGVLLVR 239 (284)
Q Consensus 205 ~V~~aa-~v~~~~-------------------~~k~~il~~l~~~l~pGg~lv~r 239 (284)
+|+.+. ++.... ..-.++++++.+.|+|||++++-
T Consensus 104 ~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 104 VVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred EEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 999874 221100 11356888999999999999874
No 92
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.29 E-value=4.3e-11 Score=116.82 Aligned_cols=111 Identities=17% Similarity=0.221 Sum_probs=87.7
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc-CCCccE
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK-LGEYDC 205 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~-~~~fD~ 205 (284)
.+.++.+|||+||||+|.|.. +|.....+++|+++|+|+.+++.+++++++.| + ++++++++|+.+++.. .+.||.
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~-la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g-~-~~v~~~~~Da~~l~~~~~~~fD~ 310 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTA-IAELMKDQGKILAVDISREKIQLVEKHAKRLK-L-SSIEIKIADAERLTEYVQDTFDR 310 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHH-HHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CeEEEEECchhhhhhhhhccCCE
Confidence 457889999999999877654 55534467899999999999999999999999 4 4699999999876522 346999
Q ss_pred EEecccc---cC---Ch---------------HHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 206 IFLAALV---GM---SK---------------EEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 206 V~~aa~v---~~---~~---------------~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
|++++-- |. ++ ....+++.++++.|||||.+++.+
T Consensus 311 Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 366 (431)
T PRK14903 311 ILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST 366 (431)
T ss_pred EEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 9987522 22 11 123678999999999999999977
No 93
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.29 E-value=7.2e-11 Score=107.40 Aligned_cols=137 Identities=20% Similarity=0.178 Sum_probs=94.5
Q ss_pred CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc--CCCccEEE
Q 036061 130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK--LGEYDCIF 207 (284)
Q Consensus 130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~--~~~fD~V~ 207 (284)
.+.+|||+|||+ |.-++.+++ ..++.+|+++|+|++|++.|+++++..| ++|+++|+.+.... .+.||+|+
T Consensus 86 ~~~~vLDlg~Gs-G~i~l~la~-~~~~~~v~~vDis~~al~~A~~N~~~~~-----~~~~~~D~~~~l~~~~~~~fDlVv 158 (251)
T TIGR03704 86 GTLVVVDLCCGS-GAVGAALAA-ALDGIELHAADIDPAAVRCARRNLADAG-----GTVHEGDLYDALPTALRGRVDILA 158 (251)
T ss_pred CCCEEEEecCch-HHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-----CEEEEeechhhcchhcCCCEeEEE
Confidence 346999999998 455566666 3678899999999999999999998776 37899998764321 14699999
Q ss_pred ecc-ccc------CChHH------------------HHHHHHHHHhhcCCCcEEEEEecCccccccCccCCCccCCCcEE
Q 036061 208 LAA-LVG------MSKEE------------------KVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKHDLLDFEL 262 (284)
Q Consensus 208 ~aa-~v~------~~~~~------------------k~~il~~l~~~l~pGg~lv~r~~~glr~~lYp~v~~~dl~gfe~ 262 (284)
++. ++. ++.+. ..++++.+.++|+|||.+++.....-.. .....-.-.||+.
T Consensus 159 ~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~---~v~~~l~~~g~~~ 235 (251)
T TIGR03704 159 ANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAP---LAVEAFARAGLIA 235 (251)
T ss_pred ECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHH---HHHHHHHHCCCCc
Confidence 875 221 11111 2478888899999999999986432100 0000001157888
Q ss_pred EEEecCCcceeeeEEE
Q 036061 263 LSVFHPTNEVINSVVL 278 (284)
Q Consensus 263 ~~~~hP~~~v~nsvi~ 278 (284)
-...||.- .-+||+
T Consensus 236 ~~~~~~~~--~~~~~~ 249 (251)
T TIGR03704 236 RVASSEEL--YATVVI 249 (251)
T ss_pred eeeEcccc--cceeee
Confidence 88888876 444544
No 94
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.29 E-value=7.4e-11 Score=105.57 Aligned_cols=108 Identities=23% Similarity=0.319 Sum_probs=84.2
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
..+.+|||+|||+ |..++.+++ ..++.+|+++|+|+.+++.|++++...| + ++++++++|+.+.. ..+.||+|+.
T Consensus 86 ~~~~~ilDig~G~-G~~~~~l~~-~~~~~~v~~iD~~~~~~~~a~~~~~~~~-~-~~~~~~~~d~~~~~-~~~~fD~Vi~ 160 (251)
T TIGR03534 86 KGPLRVLDLGTGS-GAIALALAK-ERPDARVTAVDISPEALAVARKNAARLG-L-DNVTFLQSDWFEPL-PGGKFDLIVS 160 (251)
T ss_pred cCCCeEEEEeCcH-hHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CeEEEEECchhccC-cCCceeEEEE
Confidence 4567999999997 566677777 4678899999999999999999999988 4 47999999997632 3457999987
Q ss_pred ccc-cc------CChH------------------HHHHHHHHHHhhcCCCcEEEEEec
Q 036061 209 AAL-VG------MSKE------------------EKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 209 aa~-v~------~~~~------------------~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
+.. +. +... ....+++++.+.|+|||.+++..+
T Consensus 161 npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 161 NPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG 218 (251)
T ss_pred CCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 531 11 1111 124789999999999999999764
No 95
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.29 E-value=2e-11 Score=115.62 Aligned_cols=104 Identities=20% Similarity=0.157 Sum_probs=82.4
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
.++.+|||||||+ |..++.+++ ..++.+|+++|+|+++++.|++.... .+++++++|+.+.+...+.||+|+.
T Consensus 112 ~~~~~VLDLGcGt-G~~~l~La~-~~~~~~VtgVD~S~~mL~~A~~k~~~-----~~i~~i~gD~e~lp~~~~sFDvVIs 184 (340)
T PLN02490 112 DRNLKVVDVGGGT-GFTTLGIVK-HVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIIEGDAEDLPFPTDYADRYVS 184 (340)
T ss_pred CCCCEEEEEecCC-cHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHhhhc-----cCCeEEeccHHhCCCCCCceeEEEE
Confidence 4678999999998 455566776 35678999999999999999996531 4689999999887765567999987
Q ss_pred cccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+..+.. ..++.++++++.+.|+|||.+++..
T Consensus 185 ~~~L~~-~~d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 185 AGSIEY-WPDPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred cChhhh-CCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 654421 2456789999999999999988754
No 96
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.28 E-value=4.5e-11 Score=114.71 Aligned_cols=111 Identities=17% Similarity=0.190 Sum_probs=89.4
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--cCCCcc
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--KLGEYD 204 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--~~~~fD 204 (284)
....+..+||||||. |.-++.+|+ ..|+..|+|+|+++.+++.|.+.+...| + .++.++++|+..+.. +.+.+|
T Consensus 119 ~~~~~p~vLEIGcGs-G~~ll~lA~-~~P~~~~iGIEI~~~~i~~a~~ka~~~g-L-~NV~~i~~DA~~ll~~~~~~s~D 194 (390)
T PRK14121 119 SKNQEKILIEIGFGS-GRHLLYQAK-NNPNKLFIGIEIHTPSIEQVLKQIELLN-L-KNLLIINYDARLLLELLPSNSVE 194 (390)
T ss_pred cCCCCCeEEEEcCcc-cHHHHHHHH-hCCCCCEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEECCHHHhhhhCCCCcee
Confidence 335567999999997 566677887 4689999999999999999999999998 4 569999999976532 335799
Q ss_pred EEEecccccCChHHH-----HHHHHHHHhhcCCCcEEEEEec
Q 036061 205 CIFLAALVGMSKEEK-----VKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 205 ~V~~aa~v~~~~~~k-----~~il~~l~~~l~pGg~lv~r~~ 241 (284)
.|++..-..|++..- ..+++.++|.|+|||.+.+++.
T Consensus 195 ~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 195 KIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred EEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 999865555543321 5789999999999999999883
No 97
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.28 E-value=5.3e-11 Score=111.64 Aligned_cols=106 Identities=14% Similarity=0.130 Sum_probs=81.7
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKS-THFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC 205 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~ 205 (284)
...++++|||||||+ |+-++.++. .| ..|+|||+|+.++..++..-+..+ ...++.+..+|+.+++.. ..||+
T Consensus 118 ~~~~g~~VLDvGCG~-G~~~~~~~~---~g~~~v~GiDpS~~ml~q~~~~~~~~~-~~~~v~~~~~~ie~lp~~-~~FD~ 191 (314)
T TIGR00452 118 SPLKGRTILDVGCGS-GYHMWRMLG---HGAKSLVGIDPTVLFLCQFEAVRKLLD-NDKRAILEPLGIEQLHEL-YAFDT 191 (314)
T ss_pred CCCCCCEEEEeccCC-cHHHHHHHH---cCCCEEEEEcCCHHHHHHHHHHHHHhc-cCCCeEEEECCHHHCCCC-CCcCE
Confidence 457789999999997 565666666 34 379999999999987655444434 346899999999887653 47999
Q ss_pred EEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 206 IFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 206 V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
||....+ +. .+..++++++++.|+|||.|++.+
T Consensus 192 V~s~gvL~H~--~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 192 VFSMGVLYHR--KSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EEEcchhhcc--CCHHHHHHHHHHhcCCCCEEEEEE
Confidence 9976543 33 456789999999999999999864
No 98
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.27 E-value=6.7e-11 Score=115.17 Aligned_cols=111 Identities=16% Similarity=0.156 Sum_probs=84.5
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--cCCCcc
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--KLGEYD 204 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--~~~~fD 204 (284)
.+.++.+|||+||||++.|.. +|+ ..++++|+++|+|+++++.+++++++.| +..++++..+|..+... ..+.||
T Consensus 235 ~~~~g~~VLDlcag~G~kt~~-la~-~~~~~~v~a~D~~~~~l~~~~~n~~r~g-~~~~v~~~~~d~~~~~~~~~~~~fD 311 (426)
T TIGR00563 235 APQNEETILDACAAPGGKTTH-ILE-LAPQAQVVALDIHEHRLKRVYENLKRLG-LTIKAETKDGDGRGPSQWAENEQFD 311 (426)
T ss_pred CCCCCCeEEEeCCCccHHHHH-HHH-HcCCCeEEEEeCCHHHHHHHHHHHHHcC-CCeEEEEeccccccccccccccccC
Confidence 457889999999999777654 555 2347899999999999999999999999 55445557888765433 335799
Q ss_pred EEEecccc---cC---ChH---------------HHHHHHHHHHhhcCCCcEEEEEe
Q 036061 205 CIFLAALV---GM---SKE---------------EKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 205 ~V~~aa~v---~~---~~~---------------~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.|++++.- |. .++ ...+++++.++.|||||.|++.+
T Consensus 312 ~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst 368 (426)
T TIGR00563 312 RILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT 368 (426)
T ss_pred EEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 99987521 21 111 13689999999999999999976
No 99
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.26 E-value=7.9e-11 Score=115.31 Aligned_cols=110 Identities=18% Similarity=0.173 Sum_probs=86.0
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI 206 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V 206 (284)
.+.++.+|||+||||++.| +.+|+....+++|+++|+|+++++.+++++++.| + ++|+++++|+.++.. ...||.|
T Consensus 247 ~~~~g~~VLDlgaG~G~kt-~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g-~-~~v~~~~~Da~~~~~-~~~fD~V 322 (445)
T PRK14904 247 NPQPGSTVLDLCAAPGGKS-TFMAELMQNRGQITAVDRYPQKLEKIRSHASALG-I-TIIETIEGDARSFSP-EEQPDAI 322 (445)
T ss_pred CCCCCCEEEEECCCCCHHH-HHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC-C-CeEEEEeCccccccc-CCCCCEE
Confidence 3467889999999997655 5566634456799999999999999999999999 4 479999999987653 3479999
Q ss_pred Eecccc---cC-----------ChH-------HHHHHHHHHHhhcCCCcEEEEEe
Q 036061 207 FLAALV---GM-----------SKE-------EKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 207 ~~aa~v---~~-----------~~~-------~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
++++.- |. +.+ ...+++..+++.|+|||++++.+
T Consensus 323 l~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 323 LLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred EEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 986421 11 111 23469999999999999999977
No 100
>PRK14968 putative methyltransferase; Provisional
Probab=99.26 E-value=1.1e-10 Score=99.68 Aligned_cols=106 Identities=20% Similarity=0.333 Sum_probs=82.3
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCC-eEEEEeccccccccCCCccEEE
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKR-MKFVTCDIMQVKEKLGEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~-I~f~~~D~~~~~~~~~~fD~V~ 207 (284)
.++++|||+|||. |..+..+++ .+.+|+++|+|+++++.+++++...+ +.++ ++++++|..+...+ ..||+|+
T Consensus 22 ~~~~~vLd~G~G~-G~~~~~l~~---~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~~d~~~~~~~-~~~d~vi 95 (188)
T PRK14968 22 KKGDRVLEVGTGS-GIVAIVAAK---NGKKVVGVDINPYAVECAKCNAKLNN-IRNNGVEVIRSDLFEPFRG-DKFDVIL 95 (188)
T ss_pred cCCCEEEEEcccc-CHHHHHHHh---hcceEEEEECCHHHHHHHHHHHHHcC-CCCcceEEEeccccccccc-cCceEEE
Confidence 5778999999997 667788887 38999999999999999999999888 4444 99999998764332 3799998
Q ss_pred ecccccC--------------------ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 208 LAALVGM--------------------SKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 208 ~aa~v~~--------------------~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.+..... .......+++++.+.|+|||.+++-.
T Consensus 96 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 96 FNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred ECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 7542210 01224568999999999999887654
No 101
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.26 E-value=1.2e-10 Score=113.58 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=84.6
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--cCCCcc
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--KLGEYD 204 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--~~~~fD 204 (284)
.+.++.+|||+||||++.|.. +++ ..++++|+++|+|+++++.+++++++.|. +++++++|+.+... ..+.||
T Consensus 241 ~~~~g~~VLDlgaG~G~~t~~-la~-~~~~~~v~a~D~s~~~l~~~~~n~~~~g~---~~~~~~~D~~~~~~~~~~~~fD 315 (427)
T PRK10901 241 APQNGERVLDACAAPGGKTAH-ILE-LAPQAQVVALDIDAQRLERVRENLQRLGL---KATVIVGDARDPAQWWDGQPFD 315 (427)
T ss_pred CCCCCCEEEEeCCCCChHHHH-HHH-HcCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEcCcccchhhcccCCCC
Confidence 457889999999999776654 555 24558999999999999999999999994 47999999986542 224699
Q ss_pred EEEecccc-cC-------------Ch-------HHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 205 CIFLAALV-GM-------------SK-------EEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 205 ~V~~aa~v-~~-------------~~-------~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.|++++-. +. .. ....++++...+.|+|||.+++.+
T Consensus 316 ~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 316 RILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred EEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 99976631 10 11 123579999999999999999876
No 102
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.26 E-value=9.3e-11 Score=111.27 Aligned_cols=105 Identities=20% Similarity=0.279 Sum_probs=82.6
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
....+|||+|||++ .-++.+++ ..++.+|+++|+|+.|++.|++++++.+ + ..+++.+|+.+.. .+.||+|+.
T Consensus 195 ~~~g~VLDlGCG~G-~ls~~la~-~~p~~~v~~vDis~~Al~~A~~nl~~n~-l--~~~~~~~D~~~~~--~~~fDlIvs 267 (342)
T PRK09489 195 HTKGKVLDVGCGAG-VLSAVLAR-HSPKIRLTLSDVSAAALESSRATLAANG-L--EGEVFASNVFSDI--KGRFDMIIS 267 (342)
T ss_pred cCCCeEEEeccCcC-HHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-C--CCEEEEccccccc--CCCccEEEE
Confidence 44568999999975 55666776 4678899999999999999999999988 4 3578888886522 357999998
Q ss_pred ccccc--C--ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 209 AALVG--M--SKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 209 aa~v~--~--~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+...+ . +.....++++++.++|+|||.+++..
T Consensus 268 NPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 268 NPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred CCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 75332 1 23567899999999999999987765
No 103
>PRK00811 spermidine synthase; Provisional
Probab=99.26 E-value=6.6e-11 Score=109.43 Aligned_cols=111 Identities=20% Similarity=0.311 Sum_probs=84.1
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-C--CCCeEEEEecccccccc-CCCcc
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE-F--EKRMKFVTCDIMQVKEK-LGEYD 204 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~-l--~~~I~f~~~D~~~~~~~-~~~fD 204 (284)
..+++||+||||. |.++..+++ +....+|+++|+|+++++.|++.+...+. . ..+++++.+|+.+.... .+.||
T Consensus 75 ~~p~~VL~iG~G~-G~~~~~~l~-~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 75 PNPKRVLIIGGGD-GGTLREVLK-HPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCCCEEEEEecCc-hHHHHHHHc-CCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence 5689999999996 566666666 33457899999999999999999875420 1 46899999999876543 34799
Q ss_pred EEEecccccCChH---HHHHHHHHHHhhcCCCcEEEEEec
Q 036061 205 CIFLAALVGMSKE---EKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 205 ~V~~aa~v~~~~~---~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
+|++++.-+.... -..++++.+.+.|+|||++++...
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 9998763211111 136789999999999999998654
No 104
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.26 E-value=1.3e-10 Score=109.41 Aligned_cols=110 Identities=15% Similarity=0.032 Sum_probs=87.9
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI 206 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V 206 (284)
...++.+|||+|||++++ ++..+. .|++|+|+|+|++|++.|+++++..| +.+ +++.++|+.+++...+.||+|
T Consensus 179 ~~~~g~~vLDp~cGtG~~-lieaa~---~~~~v~g~Di~~~~~~~a~~nl~~~g-~~~-i~~~~~D~~~l~~~~~~~D~I 252 (329)
T TIGR01177 179 RVTEGDRVLDPFCGTGGF-LIEAGL---MGAKVIGCDIDWKMVAGARINLEHYG-IED-FFVKRGDATKLPLSSESVDAI 252 (329)
T ss_pred CCCCcCEEEECCCCCCHH-HHHHHH---hCCeEEEEcCCHHHHHHHHHHHHHhC-CCC-CeEEecchhcCCcccCCCCEE
Confidence 457788999999998654 344444 68999999999999999999999999 555 999999999876655679999
Q ss_pred EecccccC--------ChHHHHHHHHHHHhhcCCCcEEEEEecC
Q 036061 207 FLAALVGM--------SKEEKVKIIKHIRKYMKDGGVLLVRSAK 242 (284)
Q Consensus 207 ~~aa~v~~--------~~~~k~~il~~l~~~l~pGg~lv~r~~~ 242 (284)
+++.--|. ......++++.+.+.|+|||++++-...
T Consensus 253 v~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 253 ATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred EECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence 98742111 1123578999999999999999887654
No 105
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.25 E-value=5.3e-11 Score=107.73 Aligned_cols=110 Identities=21% Similarity=0.357 Sum_probs=89.4
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC--CCccE
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL--GEYDC 205 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~--~~fD~ 205 (284)
.....+|||+|||. |.-++.+|++ .+.++|++||+++++++.|+++++..+ +++||+++++|+.++.... ..||+
T Consensus 42 ~~~~~~IlDlGaG~-G~l~L~la~r-~~~a~I~~VEiq~~~a~~A~~nv~ln~-l~~ri~v~~~Di~~~~~~~~~~~fD~ 118 (248)
T COG4123 42 VPKKGRILDLGAGN-GALGLLLAQR-TEKAKIVGVEIQEEAAEMAQRNVALNP-LEERIQVIEADIKEFLKALVFASFDL 118 (248)
T ss_pred cccCCeEEEecCCc-CHHHHHHhcc-CCCCcEEEEEeCHHHHHHHHHHHHhCc-chhceeEehhhHHHhhhcccccccCE
Confidence 35589999999997 6778888883 455999999999999999999999999 8999999999999877654 35999
Q ss_pred EEecccc---cCC---hHHH-----------HHHHHHHHhhcCCCcEEEEEe
Q 036061 206 IFLAALV---GMS---KEEK-----------VKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 206 V~~aa~v---~~~---~~~k-----------~~il~~l~~~l~pGg~lv~r~ 240 (284)
|+++.-- +-. .+.| +.+++...+.|||||.+.+-.
T Consensus 119 Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 119 IICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred EEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 9987521 111 1122 788999999999999988865
No 106
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.25 E-value=6.5e-11 Score=115.81 Aligned_cols=111 Identities=21% Similarity=0.283 Sum_probs=86.0
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CCccE
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GEYDC 205 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~fD~ 205 (284)
.+.++.+|||+||||++.| +.+|+...++++|+++|+++++++.+++++++.| +. +++++++|+.+....+ +.||+
T Consensus 247 ~~~~g~~VLDlgaG~G~~t-~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g-~~-~v~~~~~D~~~~~~~~~~~fD~ 323 (444)
T PRK14902 247 DPKGGDTVLDACAAPGGKT-THIAELLKNTGKVVALDIHEHKLKLIEENAKRLG-LT-NIETKALDARKVHEKFAEKFDK 323 (444)
T ss_pred CCCCCCEEEEeCCCCCHHH-HHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-CC-eEEEEeCCcccccchhcccCCE
Confidence 3567889999999997665 4566633467899999999999999999999999 54 5999999998764333 57999
Q ss_pred EEecccc---cC-----------ChH-------HHHHHHHHHHhhcCCCcEEEEEe
Q 036061 206 IFLAALV---GM-----------SKE-------EKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 206 V~~aa~v---~~-----------~~~-------~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
|++++-. |. +.. ...++++++.+.|||||.+++.+
T Consensus 324 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 324 ILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred EEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 9987531 11 001 12468999999999999999765
No 107
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=7.4e-11 Score=109.44 Aligned_cols=143 Identities=24% Similarity=0.280 Sum_probs=99.4
Q ss_pred hhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe
Q 036061 113 VKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC 191 (284)
Q Consensus 113 ~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~ 191 (284)
+.-.++=.++|.+.. .++++|||+|||+ |.=||..++ .|+. |+|+|+||-|++.|+.+++..| +...++.-..
T Consensus 146 HpTT~lcL~~Le~~~-~~g~~vlDvGcGS-GILaIAa~k---LGA~~v~g~DiDp~AV~aa~eNa~~N~-v~~~~~~~~~ 219 (300)
T COG2264 146 HPTTSLCLEALEKLL-KKGKTVLDVGCGS-GILAIAAAK---LGAKKVVGVDIDPQAVEAARENARLNG-VELLVQAKGF 219 (300)
T ss_pred ChhHHHHHHHHHHhh-cCCCEEEEecCCh-hHHHHHHHH---cCCceEEEecCCHHHHHHHHHHHHHcC-Cchhhhcccc
Confidence 333444444554443 6899999999997 787888777 6665 9999999999999999999999 5544444444
Q ss_pred ccccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCccccccCccCCCc-cCCCcEEEEEecCC
Q 036061 192 DIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKH-DLLDFELLSVFHPT 269 (284)
Q Consensus 192 D~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~glr~~lYp~v~~~-dl~gfe~~~~~hP~ 269 (284)
+..+.+. .+.||+|+.+-+. +.-.++..++.+.++|||++++..- +..- ...|-.. .-.||++..+.++.
T Consensus 220 ~~~~~~~-~~~~DvIVANILA----~vl~~La~~~~~~lkpgg~lIlSGI--l~~q-~~~V~~a~~~~gf~v~~~~~~~ 290 (300)
T COG2264 220 LLLEVPE-NGPFDVIVANILA----EVLVELAPDIKRLLKPGGRLILSGI--LEDQ-AESVAEAYEQAGFEVVEVLERE 290 (300)
T ss_pred cchhhcc-cCcccEEEehhhH----HHHHHHHHHHHHHcCCCceEEEEee--hHhH-HHHHHHHHHhCCCeEeEEEecC
Confidence 5444333 2479999876653 6677899999999999999998751 0000 0000000 22589998888873
No 108
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.25 E-value=7.6e-11 Score=115.10 Aligned_cols=111 Identities=16% Similarity=0.158 Sum_probs=86.7
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc----cCCC
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE----KLGE 202 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~----~~~~ 202 (284)
.+.++.+|||+||||++.|. .+|+.....++|+++|+++.+++.++++++++| + ++|+++++|+.+.+. ..+.
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~-~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g-~-~~v~~~~~D~~~~~~~~~~~~~~ 325 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTT-HIAELMGDQGEIWAVDRSASRLKKLQENAQRLG-L-KSIKILAADSRNLLELKPQWRGY 325 (434)
T ss_pred CCCCcCEEEEeCCCCchhHH-HHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC-C-CeEEEEeCChhhccccccccccc
Confidence 45778999999999977764 456633456799999999999999999999999 4 469999999987652 2347
Q ss_pred ccEEEecccc---cC---ChH---------------HHHHHHHHHHhhcCCCcEEEEEe
Q 036061 203 YDCIFLAALV---GM---SKE---------------EKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 203 fD~V~~aa~v---~~---~~~---------------~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
||.|++++-- |. .++ ...++++++++.|||||+|++.+
T Consensus 326 fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 326 FDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred CCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 9999987521 11 111 13689999999999999999876
No 109
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.24 E-value=1.1e-10 Score=100.77 Aligned_cols=108 Identities=23% Similarity=0.367 Sum_probs=84.5
Q ss_pred CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE---
Q 036061 131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF--- 207 (284)
Q Consensus 131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~--- 207 (284)
..||||+|||. |.-...|++ .......+|+|.|++|+++|+..+++.| +++.|+|.+.|+++-....++||+|.
T Consensus 68 A~~VlDLGtGN-G~~L~~L~~-egf~~~L~GvDYs~~AV~LA~niAe~~~-~~n~I~f~q~DI~~~~~~~~qfdlvlDKG 144 (227)
T KOG1271|consen 68 ADRVLDLGTGN-GHLLFQLAK-EGFQSKLTGVDYSEKAVELAQNIAERDG-FSNEIRFQQLDITDPDFLSGQFDLVLDKG 144 (227)
T ss_pred ccceeeccCCc-hHHHHHHHH-hcCCCCccccccCHHHHHHHHHHHHhcC-CCcceeEEEeeccCCcccccceeEEeecC
Confidence 34999999997 676777887 3334459999999999999999999999 78889999999987545556899996
Q ss_pred -ecc--cccCChHHH-HHHHHHHHhhcCCCcEEEEEec
Q 036061 208 -LAA--LVGMSKEEK-VKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 208 -~aa--~v~~~~~~k-~~il~~l~~~l~pGg~lv~r~~ 241 (284)
.+| +-++....| .-++..+.+.|+|||++++-+-
T Consensus 145 T~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC 182 (227)
T KOG1271|consen 145 TLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC 182 (227)
T ss_pred ceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEec
Confidence 233 223333333 5578889999999999999874
No 110
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.24 E-value=1.3e-10 Score=86.97 Aligned_cols=102 Identities=19% Similarity=0.316 Sum_probs=80.8
Q ss_pred EEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-cCCCccEEEeccc
Q 036061 133 KVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-KLGEYDCIFLAAL 211 (284)
Q Consensus 133 ~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-~~~~fD~V~~aa~ 211 (284)
+|+++|||+++ .+..+++ ..+.+++++|+|+.+++.+++.....+ ..++++.++|..+... ..++||+|+.+..
T Consensus 1 ~ildig~G~G~-~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGA-LALALAS--GPGARVTGVDISPVALELARKAAAALL--ADNVEVLKGDAEELPPEADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccH-HHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhccc--ccceEEEEcChhhhccccCCceEEEEEccc
Confidence 58999999854 5555655 468899999999999999997544443 4789999999988664 4467999998765
Q ss_pred ccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061 212 VGMSKEEKVKIIKHIRKYMKDGGVLLVR 239 (284)
Q Consensus 212 v~~~~~~k~~il~~l~~~l~pGg~lv~r 239 (284)
.....+....+++.+.+.++|||.+++.
T Consensus 76 ~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4321467889999999999999999875
No 111
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.23 E-value=9.4e-11 Score=97.15 Aligned_cols=98 Identities=18% Similarity=0.274 Sum_probs=75.4
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF 207 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~ 207 (284)
..++++|||||||.+ ..+..+++ .|.+|+++|+++.+++. ..+.+...+..+.....+.||+|+
T Consensus 20 ~~~~~~vLDiGcG~G-~~~~~l~~---~~~~~~g~D~~~~~~~~------------~~~~~~~~~~~~~~~~~~~fD~i~ 83 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTG-SFLRALAK---RGFEVTGVDISPQMIEK------------RNVVFDNFDAQDPPFPDGSFDLII 83 (161)
T ss_dssp TTTTSEEEEESSTTS-HHHHHHHH---TTSEEEEEESSHHHHHH------------TTSEEEEEECHTHHCHSSSEEEEE
T ss_pred cCCCCEEEEEcCCCC-HHHHHHHH---hCCEEEEEECCHHHHhh------------hhhhhhhhhhhhhhccccchhhHh
Confidence 478899999999975 55666777 57799999999999988 134555554444444556899999
Q ss_pred ecccccCChHHHHHHHHHHHhhcCCCcEEEEEecC
Q 036061 208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAK 242 (284)
Q Consensus 208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~ 242 (284)
....+.. ..+...+++.+.+.|||||.+++....
T Consensus 84 ~~~~l~~-~~d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 84 CNDVLEH-LPDPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp EESSGGG-SSHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred hHHHHhh-cccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 7765422 146889999999999999999998853
No 112
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.23 E-value=6.7e-11 Score=110.01 Aligned_cols=116 Identities=24% Similarity=0.325 Sum_probs=86.0
Q ss_pred hhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEE
Q 036061 111 NYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFV 189 (284)
Q Consensus 111 ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~ 189 (284)
-.+.-.++=.++|.+. ..++++|||||||+ |.-|+.-++ .|+ +|+++|+||.|++.|++|++..| +++++++.
T Consensus 143 G~H~TT~lcl~~l~~~-~~~g~~vLDvG~GS-GILaiaA~k---lGA~~v~a~DiDp~Av~~a~~N~~~N~-~~~~~~v~ 216 (295)
T PF06325_consen 143 GHHPTTRLCLELLEKY-VKPGKRVLDVGCGS-GILAIAAAK---LGAKKVVAIDIDPLAVEAARENAELNG-VEDRIEVS 216 (295)
T ss_dssp SHCHHHHHHHHHHHHH-SSTTSEEEEES-TT-SHHHHHHHH---TTBSEEEEEESSCHHHHHHHHHHHHTT--TTCEEES
T ss_pred CCCHHHHHHHHHHHHh-ccCCCEEEEeCCcH-HHHHHHHHH---cCCCeEEEecCCHHHHHHHHHHHHHcC-CCeeEEEE
Confidence 3455555555556555 46778999999997 787887777 555 69999999999999999999999 78888764
Q ss_pred EeccccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 190 TCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 190 ~~D~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
...+... ..||+|+.+-+. ..-..++..+.++|+|||.+++..
T Consensus 217 --~~~~~~~--~~~dlvvANI~~----~vL~~l~~~~~~~l~~~G~lIlSG 259 (295)
T PF06325_consen 217 --LSEDLVE--GKFDLVVANILA----DVLLELAPDIASLLKPGGYLILSG 259 (295)
T ss_dssp --CTSCTCC--S-EEEEEEES-H----HHHHHHHHHCHHHEEEEEEEEEEE
T ss_pred --Eeccccc--ccCCEEEECCCH----HHHHHHHHHHHHhhCCCCEEEEcc
Confidence 2222222 689999865443 566788999999999999999954
No 113
>PLN02366 spermidine synthase
Probab=99.23 E-value=1.1e-10 Score=109.26 Aligned_cols=110 Identities=22% Similarity=0.321 Sum_probs=84.8
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CCCCCCeEEEEeccccccccC--CCcc
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD--IEFEKRMKFVTCDIMQVKEKL--GEYD 204 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--G~l~~~I~f~~~D~~~~~~~~--~~fD 204 (284)
..+++||+||||. |.++..+++ +.+..+|+.+|||+++++.|++.+... +.-..|++++++|+.+..... +.||
T Consensus 90 ~~pkrVLiIGgG~-G~~~rellk-~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGD-GGVLREIAR-HSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCc-cHHHHHHHh-CCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCC
Confidence 6789999999996 566777887 334578999999999999999988653 211359999999997665433 4699
Q ss_pred EEEecccccCChHH---HHHHHHHHHhhcCCCcEEEEEe
Q 036061 205 CIFLAALVGMSKEE---KVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 205 ~V~~aa~v~~~~~~---k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+|++++.-+..... ..++++.+.+.|+|||+++...
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 99988653221122 4679999999999999998754
No 114
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.23 E-value=1.9e-10 Score=102.37 Aligned_cols=105 Identities=18% Similarity=0.271 Sum_probs=84.6
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-cCCCccEE
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-KLGEYDCI 206 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-~~~~fD~V 206 (284)
..++.+||+||||+ |..+..+++ .+++|+++|+++++++.|++.+...+. +++++.+|..+.+. ..+.||+|
T Consensus 46 ~~~~~~vLdiG~G~-G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~fD~I 118 (233)
T PRK05134 46 GLFGKRVLDVGCGG-GILSESMAR---LGADVTGIDASEENIEVARLHALESGL---KIDYRQTTAEELAAEHPGQFDVV 118 (233)
T ss_pred CCCCCeEEEeCCCC-CHHHHHHHH---cCCeEEEEcCCHHHHHHHHHHHHHcCC---ceEEEecCHHHhhhhcCCCccEE
Confidence 45788999999997 556677777 578999999999999999999888773 68999999877652 23579999
Q ss_pred EecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+....+.. ..+...+++.+.+.|+|||.+++..
T Consensus 119 i~~~~l~~-~~~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 119 TCMEMLEH-VPDPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred EEhhHhhc-cCCHHHHHHHHHHHcCCCcEEEEEe
Confidence 87654422 2456789999999999999998865
No 115
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.22 E-value=1.4e-10 Score=114.05 Aligned_cols=104 Identities=25% Similarity=0.307 Sum_probs=82.0
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc--ccccCCCccEE
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ--VKEKLGEYDCI 206 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~--~~~~~~~fD~V 206 (284)
.++.+|||||||+ |..+..+++ .+.+|+|+|+++++++.+++. .+ ...+++|+++|+.+ .+.+.+.||+|
T Consensus 36 ~~~~~vLDlGcG~-G~~~~~la~---~~~~v~giD~s~~~l~~a~~~---~~-~~~~i~~~~~d~~~~~~~~~~~~fD~I 107 (475)
T PLN02336 36 YEGKSVLELGAGI-GRFTGELAK---KAGQVIALDFIESVIKKNESI---NG-HYKNVKFMCADVTSPDLNISDGSVDLI 107 (475)
T ss_pred cCCCEEEEeCCCc-CHHHHHHHh---hCCEEEEEeCCHHHHHHHHHH---hc-cCCceEEEEecccccccCCCCCCEEEE
Confidence 4667999999997 566677888 467999999999999988763 23 23589999999864 33334579999
Q ss_pred Eecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 207 FLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 207 ~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+..... .++.++..++++++.+.|+|||.++++.
T Consensus 108 ~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 108 FSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred ehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 976543 4455667899999999999999999976
No 116
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.20 E-value=9.2e-11 Score=106.51 Aligned_cols=109 Identities=19% Similarity=0.296 Sum_probs=84.8
Q ss_pred hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--cC-C
Q 036061 125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--KL-G 201 (284)
Q Consensus 125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--~~-~ 201 (284)
..++.+|++|++.|+|.+.+| ..||+...+.++|+.+|+.++..+.|+++++..| +.++|++.+.|+.+--. +. .
T Consensus 35 ~l~i~pG~~VlEaGtGSG~lt-~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g-l~~~v~~~~~Dv~~~g~~~~~~~ 112 (247)
T PF08704_consen 35 RLDIRPGSRVLEAGTGSGSLT-HALARAVGPTGHVYTYEFREDRAEKARKNFERHG-LDDNVTVHHRDVCEEGFDEELES 112 (247)
T ss_dssp HTT--TT-EEEEE--TTSHHH-HHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT-CCTTEEEEES-GGCG--STT-TT
T ss_pred HcCCCCCCEEEEecCCcHHHH-HHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC-CCCCceeEecceecccccccccC
Confidence 446799999999999987665 5677767889999999999999999999999999 78999999999964322 22 4
Q ss_pred CccEEEecccccCChHHHHHHHHHHHhhc-CCCcEEEEEec
Q 036061 202 EYDCIFLAALVGMSKEEKVKIIKHIRKYM-KDGGVLLVRSA 241 (284)
Q Consensus 202 ~fD~V~~aa~v~~~~~~k~~il~~l~~~l-~pGg~lv~r~~ 241 (284)
.||.||++- ++..+++.++.+.| +|||++++=++
T Consensus 113 ~~DavfLDl------p~Pw~~i~~~~~~L~~~gG~i~~fsP 147 (247)
T PF08704_consen 113 DFDAVFLDL------PDPWEAIPHAKRALKKPGGRICCFSP 147 (247)
T ss_dssp SEEEEEEES------SSGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred cccEEEEeC------CCHHHHHHHHHHHHhcCCceEEEECC
Confidence 699999873 45567899999999 99999988553
No 117
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.19 E-value=3.7e-10 Score=102.72 Aligned_cols=109 Identities=24% Similarity=0.368 Sum_probs=83.7
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF 207 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~ 207 (284)
..++.+|||+|||+ |..++.+++ ..++.+|+++|+|+.+++.|++++. .+ ...+++|+++|+.+... .+.||+|+
T Consensus 106 ~~~~~~vLDiG~Gs-G~~~~~la~-~~~~~~v~~iDis~~~l~~a~~n~~-~~-~~~~i~~~~~d~~~~~~-~~~fD~Iv 180 (275)
T PRK09328 106 LKEPLRVLDLGTGS-GAIALALAK-ERPDAEVTAVDISPEALAVARRNAK-HG-LGARVEFLQGDWFEPLP-GGRFDLIV 180 (275)
T ss_pred ccCCCEEEEEcCcH-HHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHH-hC-CCCcEEEEEccccCcCC-CCceeEEE
Confidence 35678999999997 566777887 4678999999999999999999998 33 34689999999865322 35799998
Q ss_pred ecc-ccc------CCh------------------HHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 208 LAA-LVG------MSK------------------EEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 208 ~aa-~v~------~~~------------------~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
.+. ++. +.. +...++++++.+.|+|||.+++..+
T Consensus 181 ~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g 239 (275)
T PRK09328 181 SNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG 239 (275)
T ss_pred ECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 753 111 111 2236788999999999999999764
No 118
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.19 E-value=2.3e-10 Score=110.50 Aligned_cols=109 Identities=21% Similarity=0.210 Sum_probs=83.6
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCC-CCeEEEEecccccccc----CCCc
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFE-KRMKFVTCDIMQVKEK----LGEY 203 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~-~~I~f~~~D~~~~~~~----~~~f 203 (284)
.++++|||+|||+++++ +..+. ....+|+++|+|+.+++.|+++++..| +. ++++|+++|+.+.... ...|
T Consensus 219 ~~g~rVLDlfsgtG~~~-l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ng-l~~~~v~~i~~D~~~~l~~~~~~~~~f 294 (396)
T PRK15128 219 VENKRVLNCFSYTGGFA-VSALM--GGCSQVVSVDTSQEALDIARQNVELNK-LDLSKAEFVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_pred cCCCeEEEeccCCCHHH-HHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcC-CCCCcEEEEEccHHHHHHHHHhcCCCC
Confidence 46789999999987764 44443 234499999999999999999999999 65 5899999999886532 2369
Q ss_pred cEEEecccc-cCCh-------HHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 204 DCIFLAALV-GMSK-------EEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 204 D~V~~aa~v-~~~~-------~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
|+|+++.-- .-++ ....+++....+.|+|||.|++-+-
T Consensus 295 DlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 999998532 1111 2345667788999999999998664
No 119
>PRK05785 hypothetical protein; Provisional
Probab=99.18 E-value=1.3e-10 Score=104.16 Aligned_cols=91 Identities=15% Similarity=0.097 Sum_probs=73.0
Q ss_pred CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061 130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA 209 (284)
Q Consensus 130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a 209 (284)
++.+|||||||++ ..+..+++. . +.+|+|+|+|++|++.|++. ..++++|+.+++...+.||+|+..
T Consensus 51 ~~~~VLDlGcGtG-~~~~~l~~~-~-~~~v~gvD~S~~Ml~~a~~~----------~~~~~~d~~~lp~~d~sfD~v~~~ 117 (226)
T PRK05785 51 RPKKVLDVAAGKG-ELSYHFKKV-F-KYYVVALDYAENMLKMNLVA----------DDKVVGSFEALPFRDKSFDVVMSS 117 (226)
T ss_pred CCCeEEEEcCCCC-HHHHHHHHh-c-CCEEEEECCCHHHHHHHHhc----------cceEEechhhCCCCCCCEEEEEec
Confidence 4789999999985 556777772 2 78999999999999999862 135789999888777789999976
Q ss_pred ccccCChHHHHHHHHHHHhhcCCCc
Q 036061 210 ALVGMSKEEKVKIIKHIRKYMKDGG 234 (284)
Q Consensus 210 a~v~~~~~~k~~il~~l~~~l~pGg 234 (284)
..+. ...+..+.+++++|+|||+.
T Consensus 118 ~~l~-~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 118 FALH-ASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred Chhh-ccCCHHHHHHHHHHHhcCce
Confidence 5442 34677889999999999954
No 120
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.18 E-value=5.8e-10 Score=104.75 Aligned_cols=102 Identities=18% Similarity=0.242 Sum_probs=76.7
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC---CCCCeEEEEeccccccccCCCccE
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE---FEKRMKFVTCDIMQVKEKLGEYDC 205 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~---l~~~I~f~~~D~~~~~~~~~~fD~ 205 (284)
.++.+|||||||+ |..++.+++ .|.+|+++|+|+.|++.|++++...+. ...+++|.++|+.++ .+.||+
T Consensus 143 ~~~~~VLDlGcGt-G~~a~~la~---~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~ 215 (315)
T PLN02585 143 LAGVTVCDAGCGT-GSLAIPLAL---EGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDT 215 (315)
T ss_pred CCCCEEEEecCCC-CHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCE
Confidence 3578999999997 566788888 589999999999999999999887631 124789999997553 357999
Q ss_pred EEeccc-ccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061 206 IFLAAL-VGMSKEEKVKIIKHIRKYMKDGGVLLV 238 (284)
Q Consensus 206 V~~aa~-v~~~~~~k~~il~~l~~~l~pGg~lv~ 238 (284)
|+.... .+.+.+....+++.+.+ +.+|++++.
T Consensus 216 Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs 248 (315)
T PLN02585 216 VTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIIS 248 (315)
T ss_pred EEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEE
Confidence 986543 35555555567888875 466766554
No 121
>PRK01581 speE spermidine synthase; Validated
Probab=99.18 E-value=2.2e-10 Score=108.99 Aligned_cols=112 Identities=22% Similarity=0.371 Sum_probs=83.7
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHH-----HhcCCCCCCeEEEEeccccccccC-C
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIV-----SSDIEFEKRMKFVTCDIMQVKEKL-G 201 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~-----~~~G~l~~~I~f~~~D~~~~~~~~-~ 201 (284)
...|++||+||||. |.++..+.+ +.+..+|+++|+|+++++.|++.. .+.+.-..|++++.+|+.+..... +
T Consensus 148 h~~PkrVLIIGgGd-G~tlrelLk-~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~ 225 (374)
T PRK01581 148 VIDPKRVLILGGGD-GLALREVLK-YETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSS 225 (374)
T ss_pred CCCCCEEEEECCCH-HHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCC
Confidence 36788999999995 667777766 445689999999999999999731 122211479999999999865443 4
Q ss_pred CccEEEecccccC----ChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 202 EYDCIFLAALVGM----SKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 202 ~fD~V~~aa~v~~----~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
.||+||++..-+. ..--..++++.+.+.|+|||++++...
T Consensus 226 ~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 226 LYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred CccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 6999998853211 112236799999999999999988753
No 122
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.16 E-value=1.8e-10 Score=118.60 Aligned_cols=108 Identities=14% Similarity=0.227 Sum_probs=85.6
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCC-CCeEEEEeccccccccC-CCccE
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFE-KRMKFVTCDIMQVKEKL-GEYDC 205 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~-~~I~f~~~D~~~~~~~~-~~fD~ 205 (284)
.++++||++|||+++ .++.+|+ .|+ +|+++|+|+.|++.|+++++..| +. ++++|+++|+.++.... ..||+
T Consensus 537 ~~g~rVLDlf~gtG~-~sl~aa~---~Ga~~V~~vD~s~~al~~a~~N~~~ng-~~~~~v~~i~~D~~~~l~~~~~~fDl 611 (702)
T PRK11783 537 AKGKDFLNLFAYTGT-ASVHAAL---GGAKSTTTVDMSNTYLEWAERNFALNG-LSGRQHRLIQADCLAWLKEAREQFDL 611 (702)
T ss_pred cCCCeEEEcCCCCCH-HHHHHHH---CCCCEEEEEeCCHHHHHHHHHHHHHhC-CCccceEEEEccHHHHHHHcCCCcCE
Confidence 467899999999855 4677777 355 69999999999999999999999 55 68999999998765433 47999
Q ss_pred EEeccc-ccC---------ChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 206 IFLAAL-VGM---------SKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 206 V~~aa~-v~~---------~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
|+++.- ... ......+++..+.+.|+|||.+++.+.
T Consensus 612 IilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 612 IFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred EEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 998752 111 123457789999999999999988663
No 123
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.15 E-value=3.9e-10 Score=99.43 Aligned_cols=105 Identities=19% Similarity=0.275 Sum_probs=84.0
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CCccEEE
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~fD~V~ 207 (284)
.++.+|||+|||+ |..+..+++ .+.+++++|+|+.+++.+++.+...+. .+++|.++|+.+.+... +.||+|+
T Consensus 44 ~~~~~vLdlG~G~-G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~D~i~ 117 (224)
T TIGR01983 44 LFGLRVLDVGCGG-GLLSEPLAR---LGANVTGIDASEENIEVAKLHAKKDPL--LKIEYRCTSVEDLAEKGAKSFDVVT 117 (224)
T ss_pred CCCCeEEEECCCC-CHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcCC--CceEEEeCCHHHhhcCCCCCccEEE
Confidence 3578999999997 455667777 467899999999999999999888773 36999999998766543 5799998
Q ss_pred ecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
....++. ..+...+++.+.+.|+|||.+++..
T Consensus 118 ~~~~l~~-~~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 118 CMEVLEH-VPDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred ehhHHHh-CCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 7654422 2455689999999999999998865
No 124
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.15 E-value=1.5e-09 Score=92.48 Aligned_cols=145 Identities=17% Similarity=0.188 Sum_probs=93.9
Q ss_pred hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061 125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD 204 (284)
Q Consensus 125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD 204 (284)
.....++.+|||||||++.+| ..+++ .+.+|+++|+|+.+++.+++++... .+++++++|+.++......||
T Consensus 8 ~~~~~~~~~vLEiG~G~G~lt-~~l~~---~~~~v~~vE~~~~~~~~~~~~~~~~----~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 8 AANLRPGDTVLEIGPGKGALT-EELLE---RAARVTAIEIDPRLAPRLREKFAAA----DNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred hcCCCCcCEEEEECCCccHHH-HHHHh---cCCeEEEEECCHHHHHHHHHHhccC----CCEEEEECchhcCCccccCCC
Confidence 345567789999999986554 55666 3689999999999999999987542 489999999988765444699
Q ss_pred EEEecccccCChHHHHHHHHHHHhh--cCCCcEEEEEecCccccccCccCCC-ccC-------CCcEEEEE-----ecCC
Q 036061 205 CIFLAALVGMSKEEKVKIIKHIRKY--MKDGGVLLVRSAKGARAFLYPVVEK-HDL-------LDFELLSV-----FHPT 269 (284)
Q Consensus 205 ~V~~aa~v~~~~~~k~~il~~l~~~--l~pGg~lv~r~~~glr~~lYp~v~~-~dl-------~gfe~~~~-----~hP~ 269 (284)
.|+.+...... .+++..+.+. +.++|.+++.....-|-.--|-... ..+ .-++.+.. ++|-
T Consensus 80 ~vi~n~Py~~~----~~~i~~~l~~~~~~~~~~l~~q~e~a~rl~~~~~~~~y~~lsv~~~~~~~~~~~~~v~~~~F~P~ 155 (169)
T smart00650 80 KVVGNLPYNIS----TPILFKLLEEPPAFRDAVLMVQKEVARRLAAKPGSKDYGRLSVLLQPYFDVKILFKVPPEAFRPP 155 (169)
T ss_pred EEEECCCcccH----HHHHHHHHhcCCCcceEEEEEEHHHhHHhcCCCCCCcccHHHHHHHHHeeEEEEEEEChhhCCCC
Confidence 99876543222 2444444433 3488888886632211111111000 000 11233322 6899
Q ss_pred cceeeeEEEEee
Q 036061 270 NEVINSVVLVRK 281 (284)
Q Consensus 270 ~~v~nsvi~~r~ 281 (284)
++|--+||..++
T Consensus 156 PkV~s~~~~~~~ 167 (169)
T smart00650 156 PKVDSAVVRLER 167 (169)
T ss_pred CCceEEEEEEEE
Confidence 999998887765
No 125
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.14 E-value=1.8e-10 Score=101.07 Aligned_cols=106 Identities=21% Similarity=0.296 Sum_probs=82.6
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeE-EEEeccccccc-cCCCccEE
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMK-FVTCDIMQVKE-KLGEYDCI 206 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~-f~~~D~~~~~~-~~~~fD~V 206 (284)
.....||+|||||++- .-+-. ..|+.+||++|.+|.|-+.|.+-+++.-. .+++ |+++++.+++. ..++||.|
T Consensus 75 ~~K~~vLEvgcGtG~N--fkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~k~--~~~~~fvva~ge~l~~l~d~s~DtV 149 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGAN--FKFYP-WKPINSVTCLDPNEKMEEIADKSAAEKKP--LQVERFVVADGENLPQLADGSYDTV 149 (252)
T ss_pred cCccceEEecccCCCC--ccccc-CCCCceEEEeCCcHHHHHHHHHHHhhccC--cceEEEEeechhcCcccccCCeeeE
Confidence 4445689999998642 11111 13799999999999999999999987642 5676 99999998773 44689999
Q ss_pred EecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+. .++-++.++..+.|+++.|.|+|||++++-.
T Consensus 150 V~-TlvLCSve~~~k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 150 VC-TLVLCSVEDPVKQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred EE-EEEEeccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 74 4554566888999999999999999998865
No 126
>PRK06202 hypothetical protein; Provisional
Probab=99.13 E-value=6e-10 Score=99.49 Aligned_cols=104 Identities=14% Similarity=0.143 Sum_probs=75.4
Q ss_pred CCCCEEEEeccCCChhHHHHHHhh---cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKN---HLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC 205 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~---~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~ 205 (284)
.++.+|||||||++. .+..|++. ..++.+|+|+|+|+++++.|++..... ++++.++|+.+++...+.||+
T Consensus 59 ~~~~~iLDlGcG~G~-~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~-----~~~~~~~~~~~l~~~~~~fD~ 132 (232)
T PRK06202 59 DRPLTLLDIGCGGGD-LAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP-----GVTFRQAVSDELVAEGERFDV 132 (232)
T ss_pred CCCcEEEEeccCCCH-HHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC-----CCeEEEEecccccccCCCccE
Confidence 567899999999854 45566642 235679999999999999999865432 467777766555544468999
Q ss_pred EEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 206 IFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 206 V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
|+++... +.+.++..++++++.+.++ | .+++.+
T Consensus 133 V~~~~~lhh~~d~~~~~~l~~~~r~~~-~-~~~i~d 166 (232)
T PRK06202 133 VTSNHFLHHLDDAEVVRLLADSAALAR-R-LVLHND 166 (232)
T ss_pred EEECCeeecCChHHHHHHHHHHHHhcC-e-eEEEec
Confidence 9977544 4555566789999999987 4 444443
No 127
>PTZ00146 fibrillarin; Provisional
Probab=99.11 E-value=2e-09 Score=99.84 Aligned_cols=187 Identities=10% Similarity=0.019 Sum_probs=112.2
Q ss_pred hHHHHHHhcCCCCccc-ccccCCCcc-hhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEe
Q 036061 86 ELEFATFFAKTPQPLN-NLNLFPYYG-NYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFD 163 (284)
Q Consensus 86 E~~~a~~l~~~~~p~~-~L~~fpy~~-ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iD 163 (284)
|..|.+++...+++-. .=..|.-++ +.-+|+-.-+.-+....+.++++|||+|||| |.++..+|+...+..+|+++|
T Consensus 86 ~~vygek~~~~~~~~~~~~~eyR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~-G~~t~~lAdiVG~~G~VyAVD 164 (293)
T PTZ00146 86 ESVYGEKRISVEDAEGGEKIEYRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAAS-GTTVSHVSDLVGPEGVVYAVE 164 (293)
T ss_pred cccccceEEeeccCCCCCcceeeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEE
Confidence 5666666655432210 011233232 2244444444444455678899999999998 566777887444567999999
Q ss_pred CChHHHHHHHHHHHhcCCCCCCeEEEEecccccc---ccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 164 IDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK---EKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 164 id~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~---~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+++.+.+...+.+... .+|.++.+|+.... .....||+||.+... +.+...++.++.+.|||||.|++.-
T Consensus 165 ~s~r~~~dLl~~ak~r----~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva~---pdq~~il~~na~r~LKpGG~~vI~i 237 (293)
T PTZ00146 165 FSHRSGRDLTNMAKKR----PNIVPIIEDARYPQKYRMLVPMVDVIFADVAQ---PDQARIVALNAQYFLKNGGHFIISI 237 (293)
T ss_pred CcHHHHHHHHHHhhhc----CCCEEEECCccChhhhhcccCCCCEEEEeCCC---cchHHHHHHHHHHhccCCCEEEEEE
Confidence 9998765555544332 47899999986421 123469999987642 2445556678999999999999942
Q ss_pred c-CccccccCccCC-----CccC--CCcEEEEEecCCc-ceeeeEEEEee
Q 036061 241 A-KGARAFLYPVVE-----KHDL--LDFELLSVFHPTN-EVINSVVLVRK 281 (284)
Q Consensus 241 ~-~glr~~lYp~v~-----~~dl--~gfe~~~~~hP~~-~v~nsvi~~r~ 281 (284)
- +.. ..-.|+-+ .+.+ .||+++..++... +--.++|+++.
T Consensus 238 ka~~i-d~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py~~~h~~v~~~~ 286 (293)
T PTZ00146 238 KANCI-DSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERDHAVVIGVY 286 (293)
T ss_pred ecccc-ccCCCHHHHHHHHHHHHHHcCCceEEEEecCCccCCcEEEEEEE
Confidence 1 111 11111100 0113 4899988877443 34445666554
No 128
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.09 E-value=1.3e-09 Score=96.45 Aligned_cols=124 Identities=15% Similarity=0.152 Sum_probs=83.3
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc--------cc
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK--------EK 199 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~--------~~ 199 (284)
..++.+||||||||+..+. .+++...++++|++||+++ + .+ . .+++++++|+++.. ..
T Consensus 49 ~~~~~~VLDlG~GtG~~t~-~l~~~~~~~~~V~aVDi~~-~----------~~-~-~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQ-YAVTQIGDKGRVIACDILP-M----------DP-I-VGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred CCCCCEEEEEcccCCHHHH-HHHHHcCCCceEEEEeccc-c----------cC-C-CCcEEEecCCCChHHHHHHHHHhC
Confidence 4778899999999976654 4555344568999999998 1 12 1 35899999998742 23
Q ss_pred CCCccEEEecccc---cCChHH-------HHHHHHHHHhhcCCCcEEEEEecCc--cccccCccCCCccC-CCcEEEEEe
Q 036061 200 LGEYDCIFLAALV---GMSKEE-------KVKIIKHIRKYMKDGGVLLVRSAKG--ARAFLYPVVEKHDL-LDFELLSVF 266 (284)
Q Consensus 200 ~~~fD~V~~aa~v---~~~~~~-------k~~il~~l~~~l~pGg~lv~r~~~g--lr~~lYp~v~~~dl-~gfe~~~~~ 266 (284)
.+.||+|+.+... +.+..+ -..+++.+.+.|+|||.+++-...+ +..+++ .+ ..|+...+.
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~------~l~~~f~~v~~~ 188 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLR------EIRSLFTKVKVR 188 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHH------HHHhCceEEEEE
Confidence 3579999965321 111111 1568999999999999999965332 122221 22 467887887
Q ss_pred cCCcc
Q 036061 267 HPTNE 271 (284)
Q Consensus 267 hP~~~ 271 (284)
.|...
T Consensus 189 Kp~ss 193 (209)
T PRK11188 189 KPDSS 193 (209)
T ss_pred CCccc
Confidence 77654
No 129
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.09 E-value=1e-09 Score=100.64 Aligned_cols=111 Identities=19% Similarity=0.278 Sum_probs=82.6
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC--CCCCeEEEEecccccccc-CCCccE
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE--FEKRMKFVTCDIMQVKEK-LGEYDC 205 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~--l~~~I~f~~~D~~~~~~~-~~~fD~ 205 (284)
..|++||+||||.++ ++..+++ +.+..+|+++|+|+++++.|++.+...+. -..+++++.+|+.+.... .+.||+
T Consensus 71 ~~p~~VL~iG~G~G~-~~~~ll~-~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDv 148 (270)
T TIGR00417 71 PNPKHVLVIGGGDGG-VLREVLK-HKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDV 148 (270)
T ss_pred CCCCEEEEEcCCchH-HHHHHHh-CCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccE
Confidence 567799999999754 4555555 34467899999999999999998865421 135899999998765433 247999
Q ss_pred EEecccccC-ChHH--HHHHHHHHHhhcCCCcEEEEEec
Q 036061 206 IFLAALVGM-SKEE--KVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 206 V~~aa~v~~-~~~~--k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
|+++..-+. +... ..++++.+.+.|+|||++++...
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 998765211 1122 46889999999999999999754
No 130
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=2e-09 Score=99.69 Aligned_cols=106 Identities=23% Similarity=0.280 Sum_probs=82.0
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
..+.+|||+|||.+++ ++.+|+ ..|..++|.+|+|..|++.||++++..+ ++.. .+..+|..+-.. ++||+|++
T Consensus 157 ~~~~~vlDlGCG~Gvl-g~~la~-~~p~~~vtmvDvn~~Av~~ar~Nl~~N~-~~~~-~v~~s~~~~~v~--~kfd~Iis 230 (300)
T COG2813 157 DLGGKVLDLGCGYGVL-GLVLAK-KSPQAKLTLVDVNARAVESARKNLAANG-VENT-EVWASNLYEPVE--GKFDLIIS 230 (300)
T ss_pred cCCCcEEEeCCCccHH-HHHHHH-hCCCCeEEEEecCHHHHHHHHHhHHHcC-CCcc-EEEEeccccccc--ccccEEEe
Confidence 4456999999997554 566777 5789999999999999999999999998 4443 777788765333 27999998
Q ss_pred cccccCCh----HHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 209 AALVGMSK----EEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 209 aa~v~~~~----~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+.-++.-. .--++++.+..++|++||.|.+..
T Consensus 231 NPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVa 266 (300)
T COG2813 231 NPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVA 266 (300)
T ss_pred CCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEE
Confidence 87552211 123589999999999999877665
No 131
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.07 E-value=8.2e-10 Score=95.64 Aligned_cols=99 Identities=12% Similarity=0.158 Sum_probs=71.7
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc--------cc
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK--------EK 199 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~--------~~ 199 (284)
+.++.+|||+|||+++++..+..+ ..++++|+++|+|+.+ + . .+++++++|+.+.. ..
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~-~~~~~~v~~vDis~~~-----------~-~-~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQ-VGGKGRVIAVDLQPMK-----------P-I-ENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHH-hCCCceEEEEeccccc-----------c-C-CCceEEEeeCCChhHHHHHHHHhC
Confidence 478899999999998887665444 3456799999999864 2 1 36889999986532 12
Q ss_pred CCCccEEEeccc---ccC-C------hHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 200 LGEYDCIFLAAL---VGM-S------KEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 200 ~~~fD~V~~aa~---v~~-~------~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.+.||+|+.+.. .+. . .+...++++.+.+.|+|||++++..
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 346999997531 111 1 1234689999999999999999864
No 132
>PLN02672 methionine S-methyltransferase
Probab=99.06 E-value=1.4e-09 Score=115.56 Aligned_cols=111 Identities=22% Similarity=0.212 Sum_probs=85.6
Q ss_pred CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC--------------CCCCeEEEEeccccc
Q 036061 131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE--------------FEKRMKFVTCDIMQV 196 (284)
Q Consensus 131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~--------------l~~~I~f~~~D~~~~ 196 (284)
+.+|||+|||+ |.-++.+|+ ..+..+|+++|+|++|++.|+++++..+. +.++++|+++|+.+.
T Consensus 119 ~~~VLDlG~GS-G~Iai~La~-~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~ 196 (1082)
T PLN02672 119 DKTVAELGCGN-GWISIAIAE-KWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY 196 (1082)
T ss_pred CCEEEEEecch-HHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh
Confidence 46999999997 677888887 46678999999999999999999987641 235899999999875
Q ss_pred cccCC-CccEEEecc-ccc------CChHH------------------------------HHHHHHHHHhhcCCCcEEEE
Q 036061 197 KEKLG-EYDCIFLAA-LVG------MSKEE------------------------------KVKIIKHIRKYMKDGGVLLV 238 (284)
Q Consensus 197 ~~~~~-~fD~V~~aa-~v~------~~~~~------------------------------k~~il~~l~~~l~pGg~lv~ 238 (284)
....+ +||+|+.+. +|. |+++- ..+++++..++|+|||.+++
T Consensus 197 ~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 197 CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 53322 699998764 331 11111 26788999999999999999
Q ss_pred EecCc
Q 036061 239 RSAKG 243 (284)
Q Consensus 239 r~~~g 243 (284)
..+.+
T Consensus 277 EiG~~ 281 (1082)
T PLN02672 277 NMGGR 281 (1082)
T ss_pred EECcc
Confidence 88643
No 133
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.03 E-value=3.2e-09 Score=93.58 Aligned_cols=106 Identities=10% Similarity=0.101 Sum_probs=80.2
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CCccEEE
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~fD~V~ 207 (284)
..+.+|||+|||++.++...+++ ...+|+++|+|+++++.|+++++..| + ++++++++|+.+..... ..||+||
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr---~a~~V~~vE~~~~a~~~a~~Nl~~~~-~-~~v~~~~~D~~~~l~~~~~~fDlV~ 126 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSR---YAAGATLLEMDRAVAQQLIKNLATLK-A-GNARVVNTNALSFLAQPGTPHNVVF 126 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHc---CCCEEEEEECCHHHHHHHHHHHHHhC-C-CcEEEEEchHHHHHhhcCCCceEEE
Confidence 45789999999986555445555 34799999999999999999999999 4 47999999998754322 3599999
Q ss_pred ecccccCChHHHHHHHHHHHhh--cCCCcEEEEEec
Q 036061 208 LAALVGMSKEEKVKIIKHIRKY--MKDGGVLLVRSA 241 (284)
Q Consensus 208 ~aa~v~~~~~~k~~il~~l~~~--l~pGg~lv~r~~ 241 (284)
++.--. ..-..++++.+... ++|++++++...
T Consensus 127 ~DPPy~--~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 127 VDPPFR--KGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred ECCCCC--CChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 986421 13345566666654 799999988864
No 134
>PRK03612 spermidine synthase; Provisional
Probab=99.01 E-value=2.5e-09 Score=106.80 Aligned_cols=110 Identities=21% Similarity=0.311 Sum_probs=81.1
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCC-cEEEEEeCChHHHHHHHHH--HHhc---CCCCCCeEEEEeccccccccC-C
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKS-THFDNFDIDEAANDVARQI--VSSD---IEFEKRMKFVTCDIMQVKEKL-G 201 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g-~~V~~iDid~~ai~~Ar~~--~~~~---G~l~~~I~f~~~D~~~~~~~~-~ 201 (284)
+++++||+||||. |.++..+++ .++ .+|+.+|+|+++++.|+++ +... ..-..+++++++|+.+..... +
T Consensus 296 ~~~~rVL~IG~G~-G~~~~~ll~--~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~ 372 (521)
T PRK03612 296 ARPRRVLVLGGGD-GLALREVLK--YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAE 372 (521)
T ss_pred CCCCeEEEEcCCc-cHHHHHHHh--CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCC
Confidence 5789999999997 566666666 244 8999999999999999993 3221 111258999999998755432 4
Q ss_pred CccEEEecccccCChH----HHHHHHHHHHhhcCCCcEEEEEec
Q 036061 202 EYDCIFLAALVGMSKE----EKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 202 ~fD~V~~aa~v~~~~~----~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
+||+|+++..-..... -..++++.+.++|+|||++++...
T Consensus 373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 7999998854211111 124689999999999999998653
No 135
>PLN02823 spermine synthase
Probab=99.01 E-value=2.3e-09 Score=101.45 Aligned_cols=110 Identities=20% Similarity=0.278 Sum_probs=82.7
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC--CCCCCeEEEEeccccccccC-CCccE
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDI--EFEKRMKFVTCDIMQVKEKL-GEYDC 205 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G--~l~~~I~f~~~D~~~~~~~~-~~fD~ 205 (284)
..+++||.||+|. |.++..+.+ +.+..+|+.+|+|++.++.|++.+...+ .-..|++++.+|+.+..... ++||+
T Consensus 102 ~~pk~VLiiGgG~-G~~~re~l~-~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDv 179 (336)
T PLN02823 102 PNPKTVFIMGGGE-GSTAREVLR-HKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDV 179 (336)
T ss_pred CCCCEEEEECCCc-hHHHHHHHh-CCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccE
Confidence 4678999999995 666776666 4556789999999999999999875321 11479999999999876543 47999
Q ss_pred EEecccccCC--hHH---HHHHHH-HHHhhcCCCcEEEEEe
Q 036061 206 IFLAALVGMS--KEE---KVKIIK-HIRKYMKDGGVLLVRS 240 (284)
Q Consensus 206 V~~aa~v~~~--~~~---k~~il~-~l~~~l~pGg~lv~r~ 240 (284)
||++..-... ... -.++++ .+.+.|+|||++++..
T Consensus 180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred EEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 9988532111 011 246787 8999999999998864
No 136
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.00 E-value=1.3e-08 Score=99.76 Aligned_cols=102 Identities=15% Similarity=0.201 Sum_probs=77.2
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc----CCC
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK----LGE 202 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~----~~~ 202 (284)
...++.+|||+|||++ .-++.+|+ .+.+|+++|+|++|++.|+++++..| + ++++|+++|+.+.... .+.
T Consensus 294 ~~~~~~~VLDlgcGtG-~~sl~la~---~~~~V~gvD~s~~al~~A~~n~~~~~-~-~~v~~~~~d~~~~l~~~~~~~~~ 367 (443)
T PRK13168 294 DPQPGDRVLDLFCGLG-NFTLPLAR---QAAEVVGVEGVEAMVERARENARRNG-L-DNVTFYHANLEEDFTDQPWALGG 367 (443)
T ss_pred cCCCCCEEEEEeccCC-HHHHHHHH---hCCEEEEEeCCHHHHHHHHHHHHHcC-C-CceEEEEeChHHhhhhhhhhcCC
Confidence 3467789999999985 55677887 45899999999999999999999998 4 4799999999764321 246
Q ss_pred ccEEEeccc-ccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 203 YDCIFLAAL-VGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 203 fD~V~~aa~-v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
||+|+++.- .|+ .++++.+.+ ++|++++.+.-
T Consensus 368 fD~Vi~dPPr~g~-----~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 368 FDKVLLDPPRAGA-----AEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred CCEEEECcCCcCh-----HHHHHHHHh-cCCCeEEEEEe
Confidence 999998853 232 245666665 58887766553
No 137
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.00 E-value=9.5e-09 Score=96.31 Aligned_cols=100 Identities=14% Similarity=0.117 Sum_probs=75.3
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc-CCCccEEE
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK-LGEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~-~~~fD~V~ 207 (284)
.++.+|||+|||+ |.-++.+|+ .+.+|+|+|+|++|++.|+++++..| + ++++|+++|+.++... .+.||+|+
T Consensus 172 ~~~~~VLDl~cG~-G~~sl~la~---~~~~V~gvD~s~~av~~A~~n~~~~~-l-~~v~~~~~D~~~~~~~~~~~~D~Vv 245 (315)
T PRK03522 172 LPPRSMWDLFCGV-GGFGLHCAT---PGMQLTGIEISAEAIACAKQSAAELG-L-TNVQFQALDSTQFATAQGEVPDLVL 245 (315)
T ss_pred cCCCEEEEccCCC-CHHHHHHHh---cCCEEEEEeCCHHHHHHHHHHHHHcC-C-CceEEEEcCHHHHHHhcCCCCeEEE
Confidence 3578999999997 455688888 67899999999999999999999999 5 6899999999876542 24699999
Q ss_pred ecccc-cCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061 208 LAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVR 239 (284)
Q Consensus 208 ~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r 239 (284)
++.-- |+ ...+++.+.+ ++|++++.+.
T Consensus 246 ~dPPr~G~----~~~~~~~l~~-~~~~~ivyvs 273 (315)
T PRK03522 246 VNPPRRGI----GKELCDYLSQ-MAPRFILYSS 273 (315)
T ss_pred ECCCCCCc----cHHHHHHHHH-cCCCeEEEEE
Confidence 88542 22 1234444443 5776655443
No 138
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.98 E-value=2.1e-09 Score=97.61 Aligned_cols=110 Identities=21% Similarity=0.292 Sum_probs=83.0
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC--CCCCeEEEEeccccccccC-C-Ccc
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE--FEKRMKFVTCDIMQVKEKL-G-EYD 204 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~--l~~~I~f~~~D~~~~~~~~-~-~fD 204 (284)
..+++||.||.|. |.++..+.+ +.+-.+|+.+||||..++.|++.+..... -..|++++.+|+....... + .||
T Consensus 75 ~~p~~VLiiGgG~-G~~~~ell~-~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yD 152 (246)
T PF01564_consen 75 PNPKRVLIIGGGD-GGTARELLK-HPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYD 152 (246)
T ss_dssp SST-EEEEEESTT-SHHHHHHTT-STT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred CCcCceEEEcCCC-hhhhhhhhh-cCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCccc
Confidence 5799999999996 556666666 45567999999999999999998865321 2479999999998876544 3 599
Q ss_pred EEEecccccCChHH---HHHHHHHHHhhcCCCcEEEEEe
Q 036061 205 CIFLAALVGMSKEE---KVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 205 ~V~~aa~v~~~~~~---k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+|+++..-...... -.++++.+.+.|+|||++++..
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 99988753221122 3689999999999999999986
No 139
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.92 E-value=8e-09 Score=95.60 Aligned_cols=110 Identities=20% Similarity=0.309 Sum_probs=86.8
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC--CCCCCeEEEEeccccccccCC-CccE
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDI--EFEKRMKFVTCDIMQVKEKLG-EYDC 205 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G--~l~~~I~f~~~D~~~~~~~~~-~fD~ 205 (284)
+.+++||.||.|.+ -++..+.+ +.+-.++|.+|||++.+++||+.+.... ....|++++.+|+.++..... .||+
T Consensus 75 ~~pk~VLiiGgGdG-~tlRevlk-h~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDv 152 (282)
T COG0421 75 PNPKRVLIIGGGDG-GTLREVLK-HLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDV 152 (282)
T ss_pred CCCCeEEEECCCcc-HHHHHHHh-cCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCE
Confidence 45579999999975 55566666 5778999999999999999999986543 224899999999998877655 5999
Q ss_pred EEecccccCChH---HHHHHHHHHHhhcCCCcEEEEEe
Q 036061 206 IFLAALVGMSKE---EKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 206 V~~aa~v~~~~~---~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
|++++.=+..+. --.++++.+.+.|++||+++..+
T Consensus 153 Ii~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 153 IIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred EEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 999876321000 13689999999999999999994
No 140
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.89 E-value=2e-08 Score=90.09 Aligned_cols=100 Identities=27% Similarity=0.395 Sum_probs=79.1
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI 206 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V 206 (284)
...+.++|+|||+|.+.+ ++.+++ .+|+.+++.+|. |+.++.+++ .+||+|+.||..+ ++..+|++
T Consensus 97 d~~~~~~vvDvGGG~G~~-~~~l~~-~~P~l~~~v~Dl-p~v~~~~~~--------~~rv~~~~gd~f~---~~P~~D~~ 162 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGSGHF-AIALAR-AYPNLRATVFDL-PEVIEQAKE--------ADRVEFVPGDFFD---PLPVADVY 162 (241)
T ss_dssp TTTTSSEEEEET-TTSHH-HHHHHH-HSTTSEEEEEE--HHHHCCHHH--------TTTEEEEES-TTT---CCSSESEE
T ss_pred cccCccEEEeccCcchHH-HHHHHH-HCCCCcceeecc-Hhhhhcccc--------ccccccccccHHh---hhccccce
Confidence 346778999999997554 555665 589999999999 899999998 3699999999973 23349999
Q ss_pred Eecccc-cCChHHHHHHHHHHHhhcCCC--cEEEEEe
Q 036061 207 FLAALV-GMSKEEKVKIIKHIRKYMKDG--GVLLVRS 240 (284)
Q Consensus 207 ~~aa~v-~~~~~~k~~il~~l~~~l~pG--g~lv~r~ 240 (284)
++...+ .++.++-.++|+++++.|+|| |+|++-.
T Consensus 163 ~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 163 LLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp EEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred eeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 988766 678888899999999999999 9988865
No 141
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.88 E-value=2.4e-08 Score=87.23 Aligned_cols=107 Identities=11% Similarity=0.028 Sum_probs=80.5
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC---C-Cc
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL---G-EY 203 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~---~-~f 203 (284)
..+.+|||++||++.++ +.+++ .|+ +|+++|+|+.+++.++++++..| +.++++++++|+.+....+ . .|
T Consensus 48 ~~g~~vLDLfaGsG~lg-lea~s---rga~~v~~vE~~~~a~~~~~~N~~~~~-~~~~~~~~~~D~~~~l~~~~~~~~~~ 122 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLG-EEALS---RGAKVAFLEEDDRKANQTLKENLALLK-SGEQAEVVRNSALRALKFLAKKPTFD 122 (189)
T ss_pred cCCCEEEEecCCCcHHH-HHHHh---CCCCEEEEEeCCHHHHHHHHHHHHHhC-CcccEEEEehhHHHHHHHhhccCCCc
Confidence 35789999999986555 44444 344 89999999999999999999999 6778999999997654322 2 38
Q ss_pred cEEEecccccCChHHHHHHHHHHHh--hcCCCcEEEEEecC
Q 036061 204 DCIFLAALVGMSKEEKVKIIKHIRK--YMKDGGVLLVRSAK 242 (284)
Q Consensus 204 D~V~~aa~v~~~~~~k~~il~~l~~--~l~pGg~lv~r~~~ 242 (284)
|+||++..-+. ....++++.+.. .+++||.++++...
T Consensus 123 dvv~~DPPy~~--~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 123 NVIYLDPPFFN--GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred eEEEECcCCCC--CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 99998875422 234455665544 68999999998754
No 142
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.87 E-value=2.4e-08 Score=97.36 Aligned_cols=100 Identities=15% Similarity=0.175 Sum_probs=76.8
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc----CCCc
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK----LGEY 203 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~----~~~f 203 (284)
..++.+|||+|||+ |..++.+|+ ...+|+++|+|++|++.|+++++..| + ++++|+++|+.+.... ...|
T Consensus 290 ~~~~~~vLDl~cG~-G~~sl~la~---~~~~V~~vE~~~~av~~a~~n~~~~~-~-~nv~~~~~d~~~~l~~~~~~~~~~ 363 (431)
T TIGR00479 290 LQGEELVVDAYCGV-GTFTLPLAK---QAKSVVGIEVVPESVEKAQQNAELNG-I-ANVEFLAGTLETVLPKQPWAGQIP 363 (431)
T ss_pred cCCCCEEEEcCCCc-CHHHHHHHH---hCCEEEEEEcCHHHHHHHHHHHHHhC-C-CceEEEeCCHHHHHHHHHhcCCCC
Confidence 45678999999997 566677888 45789999999999999999999998 4 6899999999764322 2359
Q ss_pred cEEEeccc-ccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061 204 DCIFLAAL-VGMSKEEKVKIIKHIRKYMKDGGVLLV 238 (284)
Q Consensus 204 D~V~~aa~-v~~~~~~k~~il~~l~~~l~pGg~lv~ 238 (284)
|+|+++.- .|+ ..++++.+.+ ++|++.+.+
T Consensus 364 D~vi~dPPr~G~----~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 364 DVLLLDPPRKGC----AAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred CEEEECcCCCCC----CHHHHHHHHh-cCCCEEEEE
Confidence 99998764 232 2456666654 788876554
No 143
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.86 E-value=8e-09 Score=87.60 Aligned_cols=79 Identities=14% Similarity=0.192 Sum_probs=63.6
Q ss_pred EEEeCChHHHHHHHHHHHh--cCCCCCCeEEEEeccccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEE
Q 036061 160 DNFDIDEAANDVARQIVSS--DIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLL 237 (284)
Q Consensus 160 ~~iDid~~ai~~Ar~~~~~--~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv 237 (284)
+|+|+|++|++.|++..+. .+ ...+|+|+++|+.+++...+.||+|++...+. ..+++.+++++++|.|||||.++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~-~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~-~~~d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS-CYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLR-NVVDRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc-CCCceEEEEechhhCCCCCCCeeEEEecchhh-cCCCHHHHHHHHHHHcCcCeEEE
Confidence 5899999999999877653 22 23589999999999887777899998654332 22678899999999999999998
Q ss_pred EEe
Q 036061 238 VRS 240 (284)
Q Consensus 238 ~r~ 240 (284)
+.+
T Consensus 79 i~d 81 (160)
T PLN02232 79 ILD 81 (160)
T ss_pred EEE
Confidence 765
No 144
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.86 E-value=2.9e-08 Score=97.93 Aligned_cols=111 Identities=17% Similarity=0.176 Sum_probs=87.8
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CCccE
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GEYDC 205 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~fD~ 205 (284)
.+.++.+|||+++||+|=|+.+ |..+.....|++.|+++..++..+++++++|. .+|.+.+.|+..+.... +.||.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~l-a~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~--~nv~v~~~D~~~~~~~~~~~fD~ 186 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQI-AALMNNQGAIVANEYSASRVKVLHANISRCGV--SNVALTHFDGRVFGAALPETFDA 186 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHH-HHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEeCchhhhhhhchhhcCe
Confidence 4578899999999998887664 54344457999999999999999999999994 56899999987654333 36999
Q ss_pred EEecccc---cC---ChHH---------------HHHHHHHHHhhcCCCcEEEEEe
Q 036061 206 IFLAALV---GM---SKEE---------------KVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 206 V~~aa~v---~~---~~~~---------------k~~il~~l~~~l~pGg~lv~r~ 240 (284)
|++++-- |+ +++. ..++|++.++.|||||+|++.+
T Consensus 187 ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 187 ILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred EEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 9988732 32 1111 1789999999999999999876
No 145
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=4.5e-08 Score=85.10 Aligned_cols=78 Identities=24% Similarity=0.391 Sum_probs=61.2
Q ss_pred cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061 126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC 205 (284)
Q Consensus 126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~ 205 (284)
.+.-.++.|+|+|||+ |.=++-.+- +.-.+|+|+|+||++++.+++++.+++ .+++|+++|+.+.. ..||.
T Consensus 41 ~g~l~g~~V~DlG~GT-G~La~ga~~--lGa~~V~~vdiD~~a~ei~r~N~~~l~---g~v~f~~~dv~~~~---~~~dt 111 (198)
T COG2263 41 RGDLEGKTVLDLGAGT-GILAIGAAL--LGASRVLAVDIDPEALEIARANAEELL---GDVEFVVADVSDFR---GKFDT 111 (198)
T ss_pred cCCcCCCEEEEcCCCc-CHHHHHHHh--cCCcEEEEEecCHHHHHHHHHHHHhhC---CceEEEEcchhhcC---Cccce
Confidence 3567889999999998 444443332 334789999999999999999999955 48999999997643 57899
Q ss_pred EEecccc
Q 036061 206 IFLAALV 212 (284)
Q Consensus 206 V~~aa~v 212 (284)
|+++.--
T Consensus 112 vimNPPF 118 (198)
T COG2263 112 VIMNPPF 118 (198)
T ss_pred EEECCCC
Confidence 9888643
No 146
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.85 E-value=3.6e-08 Score=94.60 Aligned_cols=101 Identities=12% Similarity=0.096 Sum_probs=77.9
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CCccEEE
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~fD~V~ 207 (284)
.++.+|||+|||.+ .-++.+|. .+.+|++||+|+.|++.|+++++..| + ++++|+++|+.+..... ++||+|+
T Consensus 232 ~~~~~vLDL~cG~G-~~~l~la~---~~~~v~~vE~~~~av~~a~~N~~~~~-~-~~~~~~~~d~~~~~~~~~~~~D~vi 305 (374)
T TIGR02085 232 IPVTQMWDLFCGVG-GFGLHCAG---PDTQLTGIEIESEAIACAQQSAQMLG-L-DNLSFAALDSAKFATAQMSAPELVL 305 (374)
T ss_pred cCCCEEEEccCCcc-HHHHHHhh---cCCeEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEECCHHHHHHhcCCCCCEEE
Confidence 45689999999975 45566776 67899999999999999999999999 4 48999999998755433 4699999
Q ss_pred ecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 208 LAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 208 ~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
++.-- |+ ..++++.+.+ ++|++++.+.-
T Consensus 306 ~DPPr~G~----~~~~l~~l~~-~~p~~ivyvsc 334 (374)
T TIGR02085 306 VNPPRRGI----GKELCDYLSQ-MAPKFILYSSC 334 (374)
T ss_pred ECCCCCCC----cHHHHHHHHh-cCCCeEEEEEe
Confidence 98642 32 2456666654 68887766654
No 147
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.84 E-value=2.7e-08 Score=92.32 Aligned_cols=106 Identities=14% Similarity=0.192 Sum_probs=79.6
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI 206 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V 206 (284)
.-.+++|||||||. |+=+..|++ .|+ .|+|||.++.-.-..+-+-+-+| ....+.+.---+.+++. .+.||+|
T Consensus 113 ~L~gk~VLDIGC~n-GY~~frM~~---~GA~~ViGiDP~~lf~~QF~~i~~~lg-~~~~~~~lplgvE~Lp~-~~~FDtV 186 (315)
T PF08003_consen 113 DLKGKRVLDIGCNN-GYYSFRMLG---RGAKSVIGIDPSPLFYLQFEAIKHFLG-QDPPVFELPLGVEDLPN-LGAFDTV 186 (315)
T ss_pred CcCCCEEEEecCCC-cHHHHHHhh---cCCCEEEEECCChHHHHHHHHHHHHhC-CCccEEEcCcchhhccc-cCCcCEE
Confidence 46889999999997 666777776 555 59999999988777666666666 33344444334555565 6789999
Q ss_pred EecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
|+.... -+..+....|.++...|+|||.+++.+
T Consensus 187 F~MGVL-YHrr~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 187 FSMGVL-YHRRSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred EEeeeh-hccCCHHHHHHHHHHhhCCCCEEEEEE
Confidence 977543 234667889999999999999999987
No 148
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.84 E-value=4.6e-08 Score=92.09 Aligned_cols=111 Identities=16% Similarity=0.112 Sum_probs=76.7
Q ss_pred CCccccccc-CCCcchhhhhhHHHHHHHH--hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHH
Q 036061 97 PQPLNNLNL-FPYYGNYVKLANLEYRILD--ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVAR 173 (284)
Q Consensus 97 ~~p~~~L~~-fpy~~ny~~l~~~E~~~l~--~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar 173 (284)
+.|-.+|.. -|.--||+.-+...+.... ......+.++||||||++++..++.++ .++++|+|+|||+.|++.|+
T Consensus 78 dip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~--~~~~~~~atDId~~Al~~A~ 155 (321)
T PRK11727 78 DIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVH--EYGWRFVGSDIDPQALASAQ 155 (321)
T ss_pred cCCCCCcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhh--CCCCEEEEEeCCHHHHHHHH
Confidence 456666643 3766778755543221100 011135689999999987676665544 57999999999999999999
Q ss_pred HHHHhc-CCCCCCeEEEE-eccccccc----cCCCccEEEecc
Q 036061 174 QIVSSD-IEFEKRMKFVT-CDIMQVKE----KLGEYDCIFLAA 210 (284)
Q Consensus 174 ~~~~~~-G~l~~~I~f~~-~D~~~~~~----~~~~fD~V~~aa 210 (284)
++++.. + ++++|+++. .|..++.. ..+.||+|+.+.
T Consensus 156 ~Nv~~Np~-l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNP 197 (321)
T PRK11727 156 AIISANPG-LNGAIRLRLQKDSKAIFKGIIHKNERFDATLCNP 197 (321)
T ss_pred HHHHhccC-CcCcEEEEEccchhhhhhcccccCCceEEEEeCC
Confidence 999999 7 788999964 44443332 234799999876
No 149
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.80 E-value=3.4e-08 Score=95.14 Aligned_cols=111 Identities=17% Similarity=0.180 Sum_probs=89.3
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC----CCc
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL----GEY 203 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~----~~f 203 (284)
..+++||++=|=++|.| +..|. .|+ +||+||+|..++++|+++++-.|.-.+++.|+++|+.++.... .+|
T Consensus 216 ~~GkrvLNlFsYTGgfS-v~Aa~---gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~f 291 (393)
T COG1092 216 AAGKRVLNLFSYTGGFS-VHAAL---GGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKF 291 (393)
T ss_pred ccCCeEEEecccCcHHH-HHHHh---cCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcc
Confidence 34999999999876654 55555 788 9999999999999999999999954678999999999876533 269
Q ss_pred cEEEeccc--c---cCC---hHHHHHHHHHHHhhcCCCcEEEEEecCc
Q 036061 204 DCIFLAAL--V---GMS---KEEKVKIIKHIRKYMKDGGVLLVRSAKG 243 (284)
Q Consensus 204 D~V~~aa~--v---~~~---~~~k~~il~~l~~~l~pGg~lv~r~~~g 243 (284)
|+|+++.- . .+. ..++.+++....+.|+|||++++-+.++
T Consensus 292 DlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 292 DLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred cEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 99999863 2 111 2456889999999999999999988543
No 150
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.80 E-value=1.4e-08 Score=86.76 Aligned_cols=76 Identities=18% Similarity=0.238 Sum_probs=58.0
Q ss_pred CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCC--C-ccEEEe
Q 036061 132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLG--E-YDCIFL 208 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~--~-fD~V~~ 208 (284)
+.|+|+.||. |..++.+|+ ...+|++||+||..++.|+.+++..| ++++|+|+++|..++..... . ||+||+
T Consensus 1 ~~vlD~fcG~-GGNtIqFA~---~~~~Viaidid~~~~~~a~hNa~vYG-v~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 1 TTVLDAFCGV-GGNTIQFAR---TFDRVIAIDIDPERLECAKHNAEVYG-VADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp SEEEETT-TT-SHHHHHHHH---TT-EEEEEES-HHHHHHHHHHHHHTT--GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred CEEEEeccCc-CHHHHHHHH---hCCeEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 3689999995 678899999 57899999999999999999999999 79999999999998765543 2 899998
Q ss_pred cccc
Q 036061 209 AALV 212 (284)
Q Consensus 209 aa~v 212 (284)
+.--
T Consensus 76 SPPW 79 (163)
T PF09445_consen 76 SPPW 79 (163)
T ss_dssp ---B
T ss_pred CCCC
Confidence 8643
No 151
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.78 E-value=1.1e-07 Score=86.76 Aligned_cols=112 Identities=13% Similarity=0.178 Sum_probs=82.3
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEE----Eecccccc-ccCC
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFV----TCDIMQVK-EKLG 201 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~----~~D~~~~~-~~~~ 201 (284)
.-..+..+||+|||.+.++.-+++. .+.++|++||.|+.|+.+|.+|+.+++ +..++..+ ++|..+-- ..++
T Consensus 145 ~~~~~~~ildlgtGSGaIslsll~~--L~~~~v~AiD~S~~Ai~La~eN~qr~~-l~g~i~v~~~~me~d~~~~~~l~~~ 221 (328)
T KOG2904|consen 145 EHSKHTHILDLGTGSGAISLSLLHG--LPQCTVTAIDVSKAAIKLAKENAQRLK-LSGRIEVIHNIMESDASDEHPLLEG 221 (328)
T ss_pred hhcccceEEEecCCccHHHHHHHhc--CCCceEEEEeccHHHHHHHHHHHHHHh-hcCceEEEecccccccccccccccC
Confidence 3456679999999987666555544 779999999999999999999999999 79999998 45554322 2235
Q ss_pred CccEEEecc-cccC-Ch----------HH-------------HHHHHHHHHhhcCCCcEEEEEec
Q 036061 202 EYDCIFLAA-LVGM-SK----------EE-------------KVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 202 ~fD~V~~aa-~v~~-~~----------~~-------------k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
.+|+++.+. +|.- +. |+ ...++.-.-|.|+|||.+.+...
T Consensus 222 ~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 222 KIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 789887664 3411 11 11 15566777889999999988764
No 152
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.78 E-value=4.2e-08 Score=86.15 Aligned_cols=106 Identities=19% Similarity=0.227 Sum_probs=81.4
Q ss_pred CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc---cCCCccEEEe
Q 036061 132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE---KLGEYDCIFL 208 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~---~~~~fD~V~~ 208 (284)
.-++|||||. |--.+.+|+ ..|+..++|||+....+..|.+.+.+.|. +++.++++|+..+.. +.+..|-|++
T Consensus 19 ~l~lEIG~G~-G~~l~~~A~-~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l--~Nv~~~~~da~~~l~~~~~~~~v~~i~i 94 (195)
T PF02390_consen 19 PLILEIGCGK-GEFLIELAK-RNPDINFIGIEIRKKRVAKALRKAEKRGL--KNVRFLRGDARELLRRLFPPGSVDRIYI 94 (195)
T ss_dssp EEEEEET-TT-SHHHHHHHH-HSTTSEEEEEES-HHHHHHHHHHHHHHTT--SSEEEEES-CTTHHHHHSTTTSEEEEEE
T ss_pred CeEEEecCCC-CHHHHHHHH-HCCCCCEEEEecchHHHHHHHHHHHhhcc--cceEEEEccHHHHHhhcccCCchheEEE
Confidence 3999999996 566777887 58999999999999999999999999985 799999999987443 2357899987
Q ss_pred cccccCChHH--H-----HHHHHHHHhhcCCCcEEEEEec
Q 036061 209 AALVGMSKEE--K-----VKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 209 aa~v~~~~~~--k-----~~il~~l~~~l~pGg~lv~r~~ 241 (284)
..--.|++.. | ..+++.+++.|+|||.|-+++-
T Consensus 95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 6543343211 1 6799999999999999999884
No 153
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.77 E-value=5e-08 Score=84.87 Aligned_cols=91 Identities=12% Similarity=0.150 Sum_probs=66.7
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccc-c-ccCCCccEE
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQV-K-EKLGEYDCI 206 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~-~-~~~~~fD~V 206 (284)
.++.+|||||||++.+ +..+++ ..+..++|+|+++++++.|++ .+++++++|+.+. + ...+.||+|
T Consensus 12 ~~~~~iLDiGcG~G~~-~~~l~~--~~~~~~~giD~s~~~i~~a~~---------~~~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 12 PPGSRVLDLGCGDGEL-LALLRD--EKQVRGYGIEIDQDGVLACVA---------RGVNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred CCCCEEEEeCCCCCHH-HHHHHh--ccCCcEEEEeCCHHHHHHHHH---------cCCeEEEEEhhhcccccCCCCcCEE
Confidence 5678999999998554 566665 257789999999999998864 2468999998752 2 233579999
Q ss_pred EecccccCChHHHHHHHHHHHhhcCC
Q 036061 207 FLAALVGMSKEEKVKIIKHIRKYMKD 232 (284)
Q Consensus 207 ~~aa~v~~~~~~k~~il~~l~~~l~p 232 (284)
++...++ ...+..++++++.+.+++
T Consensus 80 i~~~~l~-~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 80 ILSQTLQ-ATRNPEEILDEMLRVGRH 104 (194)
T ss_pred EEhhHhH-cCcCHHHHHHHHHHhCCe
Confidence 9775442 225677788998887654
No 154
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.76 E-value=7.7e-08 Score=83.84 Aligned_cols=100 Identities=19% Similarity=0.213 Sum_probs=82.5
Q ss_pred CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEeccc
Q 036061 132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAAL 211 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~ 211 (284)
.+++||||| .|+.++.||= .+|..+|+-+|....-+..-+..++++| + ++++++++.+.+ ......||+|+.=|.
T Consensus 50 ~~~lDiGSG-aGfPGipLaI-~~p~~~~~LvEs~~KK~~FL~~~~~~L~-L-~nv~v~~~R~E~-~~~~~~fd~v~aRAv 124 (184)
T PF02527_consen 50 KKVLDIGSG-AGFPGIPLAI-ARPDLQVTLVESVGKKVAFLKEVVRELG-L-SNVEVINGRAEE-PEYRESFDVVTARAV 124 (184)
T ss_dssp SEEEEETST-TTTTHHHHHH-H-TTSEEEEEESSHHHHHHHHHHHHHHT---SSEEEEES-HHH-TTTTT-EEEEEEESS
T ss_pred ceEEecCCC-CCChhHHHHH-hCCCCcEEEEeCCchHHHHHHHHHHHhC-C-CCEEEEEeeecc-cccCCCccEEEeehh
Confidence 389999999 4899999987 6899999999999999999999999999 4 589999999987 333457999986555
Q ss_pred ccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 212 VGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 212 v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
.+-..+++-+.+.+++||.+++--+
T Consensus 125 -----~~l~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 125 -----APLDKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp -----SSHHHHHHHHGGGEEEEEEEEEEES
T ss_pred -----cCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 3455789999999999999888754
No 155
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.75 E-value=5.1e-09 Score=82.17 Aligned_cols=101 Identities=18% Similarity=0.256 Sum_probs=49.3
Q ss_pred EEeccCCChhHHHHHHhhcCCCc--EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC--CCccEEEecc
Q 036061 135 AFVGSGPMPLTSIVMAKNHLKST--HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL--GEYDCIFLAA 210 (284)
Q Consensus 135 L~IGsG~lp~tai~LA~~~~~g~--~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~--~~fD~V~~aa 210 (284)
++||+. .|.|++++++...++. +++++|..+. .+.+++.+++.+ +.++++++.+|..+....+ ..||++|+++
T Consensus 1 lEiG~~-~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~-~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTY-SGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAG-LSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG 77 (106)
T ss_dssp ---------------------------EEEESS-------------GG-G-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred Cccccc-cccccccccccccccccCCEEEEECCCc-ccccchhhhhcC-CCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence 689987 5789999988544444 7999999997 566677777777 6789999999998765444 4799999997
Q ss_pred cccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 211 LVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 211 ~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.. +.+...+-++.+.++|+|||++++.+
T Consensus 78 ~H--~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 78 DH--SYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp -----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CC--CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 53 23666778999999999999999875
No 156
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.73 E-value=5.9e-08 Score=85.64 Aligned_cols=110 Identities=20% Similarity=0.311 Sum_probs=77.9
Q ss_pred HHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccc
Q 036061 117 NLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQV 196 (284)
Q Consensus 117 ~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~ 196 (284)
..|..-+.+. ..++..|+|.-||-+|+ ++.+|+ +..+..|+++|++|.|++..+++++..+ ++++|..+++|+.++
T Consensus 89 ~~Er~Ri~~~-v~~~e~VlD~faGIG~f-~l~~ak-~~~~~~V~A~d~Np~a~~~L~~Ni~lNk-v~~~i~~~~~D~~~~ 164 (200)
T PF02475_consen 89 STERRRIANL-VKPGEVVLDMFAGIGPF-SLPIAK-HGKAKRVYAVDLNPDAVEYLKENIRLNK-VENRIEVINGDAREF 164 (200)
T ss_dssp HHHHHHHHTC---TT-EEEETT-TTTTT-HHHHHH-HT-SSEEEEEES-HHHHHHHHHHHHHTT--TTTEEEEES-GGG-
T ss_pred HHHHHHHHhc-CCcceEEEEccCCccHH-HHHHhh-hcCccEEEEecCCHHHHHHHHHHHHHcC-CCCeEEEEcCCHHHh
Confidence 3465555443 57899999999996555 566777 4678899999999999999999999999 799999999999988
Q ss_pred cccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEE
Q 036061 197 KEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVL 236 (284)
Q Consensus 197 ~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~l 236 (284)
.. ...||.|++... +.-.+++....+.+++||++
T Consensus 165 ~~-~~~~drvim~lp-----~~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 165 LP-EGKFDRVIMNLP-----ESSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp ---TT-EEEEEE--T-----SSGGGGHHHHHHHEEEEEEE
T ss_pred cC-ccccCEEEECCh-----HHHHHHHHHHHHHhcCCcEE
Confidence 76 457999987533 22236888999999999986
No 157
>PHA03411 putative methyltransferase; Provisional
Probab=98.72 E-value=7e-08 Score=88.85 Aligned_cols=102 Identities=10% Similarity=0.175 Sum_probs=72.6
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
..+.+|||+|||++.++ +.+++ ..++.+|+++|+|+++++.|+++. .+++++++|+.+... ...||+|+.
T Consensus 63 ~~~grVLDLGcGsGils-l~la~-r~~~~~V~gVDisp~al~~Ar~n~-------~~v~~v~~D~~e~~~-~~kFDlIIs 132 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLS-FCMLH-RCKPEKIVCVELNPEFARIGKRLL-------PEAEWITSDVFEFES-NEKFDVVIS 132 (279)
T ss_pred ccCCeEEEcCCCCCHHH-HHHHH-hCCCCEEEEEECCHHHHHHHHHhC-------cCCEEEECchhhhcc-cCCCcEEEE
Confidence 34579999999986554 44444 245789999999999999999852 268999999987653 247999998
Q ss_pred ccc-ccCChHHH------------------HHHHHHHHhhcCCCcEEEEEe
Q 036061 209 AAL-VGMSKEEK------------------VKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 209 aa~-v~~~~~~k------------------~~il~~l~~~l~pGg~lv~r~ 240 (284)
+.- ...+..++ .+++......|+|+|.+.+..
T Consensus 133 NPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y 183 (279)
T PHA03411 133 NPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY 183 (279)
T ss_pred cCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE
Confidence 653 22222211 356677788888998766653
No 158
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.71 E-value=1.1e-07 Score=88.52 Aligned_cols=83 Identities=18% Similarity=0.128 Sum_probs=64.4
Q ss_pred hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC----
Q 036061 125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL---- 200 (284)
Q Consensus 125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~---- 200 (284)
.+.+.++..++|.+||.+|.|...+.. ..++++|+|+|+|++|++.|++.+.. + ++++++++|..++...+
T Consensus 14 ~L~~~pg~~vlD~TlG~GGhS~~il~~-~~~~g~VigiD~D~~al~~ak~~L~~-~---~ri~~i~~~f~~l~~~l~~~~ 88 (296)
T PRK00050 14 ALAIKPDGIYVDGTFGGGGHSRAILER-LGPKGRLIAIDRDPDAIAAAKDRLKP-F---GRFTLVHGNFSNLKEVLAEGL 88 (296)
T ss_pred hhCCCCCCEEEEeCcCChHHHHHHHHh-CCCCCEEEEEcCCHHHHHHHHHhhcc-C---CcEEEEeCCHHHHHHHHHcCC
Confidence 335577889999999988877665543 33468999999999999999998765 3 59999999998764322
Q ss_pred CCccEEEecccc
Q 036061 201 GEYDCIFLAALV 212 (284)
Q Consensus 201 ~~fD~V~~aa~v 212 (284)
..+|.|+++-.+
T Consensus 89 ~~vDgIl~DLGv 100 (296)
T PRK00050 89 GKVDGILLDLGV 100 (296)
T ss_pred CccCEEEECCCc
Confidence 269999877654
No 159
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=2.9e-07 Score=87.88 Aligned_cols=112 Identities=19% Similarity=0.178 Sum_probs=86.9
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCC---Cc
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLG---EY 203 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~---~f 203 (284)
.+.++.+|||..++|+|=|+.+.+.-...|..|+++|+|+..++.-+++++++|. . ++..++.|....+.... .|
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~-~-nv~~~~~d~~~~~~~~~~~~~f 230 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV-R-NVIVVNKDARRLAELLPGGEKF 230 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC-C-ceEEEecccccccccccccCcC
Confidence 4689999999999999988775544112367889999999999999999999994 4 48888888875543322 49
Q ss_pred cEEEecccc---cC---ChHH---------------HHHHHHHHHhhcCCCcEEEEEe
Q 036061 204 DCIFLAALV---GM---SKEE---------------KVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 204 D~V~~aa~v---~~---~~~~---------------k~~il~~l~~~l~pGg~lv~r~ 240 (284)
|.|++++-- |. +++- -.++|++.++.+||||.|++.+
T Consensus 231 D~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 231 DRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred cEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 999988721 22 1111 2789999999999999999977
No 160
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.67 E-value=1.9e-07 Score=82.11 Aligned_cols=118 Identities=18% Similarity=0.293 Sum_probs=74.2
Q ss_pred CCCCCEEEEeccCCC--hhHHHHHHhhc-----CCCcEEEEEeCChHHHHHHHHHH--------------Hh-----cCC
Q 036061 128 VVNPKKVAFVGSGPM--PLTSIVMAKNH-----LKSTHFDNFDIDEAANDVARQIV--------------SS-----DIE 181 (284)
Q Consensus 128 ~~~~~~VL~IGsG~l--p~tai~LA~~~-----~~g~~V~~iDid~~ai~~Ar~~~--------------~~-----~G~ 181 (284)
..++-||.-.||+++ |+|..++.... ....+|+|.|||+.+++.|++=+ ++ .|.
T Consensus 29 ~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~ 108 (196)
T PF01739_consen 29 PGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGG 108 (196)
T ss_dssp S-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CC
T ss_pred CCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCC
Confidence 357789999999964 45544444321 11479999999999999998622 00 110
Q ss_pred -------CCCCeEEEEeccccccccCCCccEEEecc-cccCChHHHHHHHHHHHhhcCCCcEEEEEecCccc
Q 036061 182 -------FEKRMKFVTCDIMQVKEKLGEYDCIFLAA-LVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGAR 245 (284)
Q Consensus 182 -------l~~~I~f~~~D~~~~~~~~~~fD~V~~aa-~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~glr 245 (284)
+.++|+|...|+.+.....+.||+||.-. ++-++.+.+.++++.+++.|+|||.|++-.+..+.
T Consensus 109 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE~l~ 180 (196)
T PF01739_consen 109 GYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSESLP 180 (196)
T ss_dssp CTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT--ST
T ss_pred ceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCccCC
Confidence 23789999999988344456899999654 34678899999999999999999999998765543
No 161
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=2.5e-07 Score=81.65 Aligned_cols=112 Identities=19% Similarity=0.233 Sum_probs=84.0
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhc-CCCcEEEEEeCChHHHHHHHHHHHhcC--------CCCCCeEEEEeccccccc
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNH-LKSTHFDNFDIDEAANDVARQIVSSDI--------EFEKRMKFVTCDIMQVKE 198 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~-~~g~~V~~iDid~~ai~~Ar~~~~~~G--------~l~~~I~f~~~D~~~~~~ 198 (284)
+.++.+.|+||||++-+|+ ++|+-. .+|..++|||.-|+-++.+++++++.- .-..+..|++||......
T Consensus 80 L~pG~s~LdvGsGSGYLt~-~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~ 158 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTA-CFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA 158 (237)
T ss_pred hccCcceeecCCCccHHHH-HHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC
Confidence 5899999999999865554 566422 355666999999999999999997642 113578899999998777
Q ss_pred cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec-Cccccc
Q 036061 199 KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA-KGARAF 247 (284)
Q Consensus 199 ~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~-~glr~~ 247 (284)
+..+||.|++-|.+ .++.+.+.+.|+|||.+++--. .+.-+.
T Consensus 159 e~a~YDaIhvGAaa-------~~~pq~l~dqL~~gGrllip~~~~~~~q~ 201 (237)
T KOG1661|consen 159 EQAPYDAIHVGAAA-------SELPQELLDQLKPGGRLLIPVGQDGGTQY 201 (237)
T ss_pred ccCCcceEEEccCc-------cccHHHHHHhhccCCeEEEeecccCceeE
Confidence 77899999987765 2344667778899998887554 344443
No 162
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.66 E-value=3.4e-07 Score=85.32 Aligned_cols=79 Identities=11% Similarity=0.202 Sum_probs=63.8
Q ss_pred hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061 125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD 204 (284)
Q Consensus 125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD 204 (284)
.....++.+|+|||||++.+|. .+++ .+.+|+++|+|+++++.+++.+...| ..++++++++|+.+.. +..||
T Consensus 31 ~~~~~~~~~VLEIG~G~G~LT~-~Ll~---~~~~V~avEiD~~li~~l~~~~~~~~-~~~~v~ii~~Dal~~~--~~~~d 103 (294)
T PTZ00338 31 KAAIKPTDTVLEIGPGTGNLTE-KLLQ---LAKKVIAIEIDPRMVAELKKRFQNSP-LASKLEVIEGDALKTE--FPYFD 103 (294)
T ss_pred hcCCCCcCEEEEecCchHHHHH-HHHH---hCCcEEEEECCHHHHHHHHHHHHhcC-CCCcEEEEECCHhhhc--ccccC
Confidence 3356788999999999876665 4555 46789999999999999999998877 4678999999997643 45799
Q ss_pred EEEecc
Q 036061 205 CIFLAA 210 (284)
Q Consensus 205 ~V~~aa 210 (284)
.|+.+.
T Consensus 104 ~VvaNl 109 (294)
T PTZ00338 104 VCVANV 109 (294)
T ss_pred EEEecC
Confidence 988654
No 163
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.66 E-value=3.5e-07 Score=80.74 Aligned_cols=120 Identities=14% Similarity=0.162 Sum_probs=89.5
Q ss_pred HHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc
Q 036061 118 LEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK 197 (284)
Q Consensus 118 ~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~ 197 (284)
...+.|.++....+.+||+||||+ |-=+.++|+ ++|..+-.--|.|+....--+..+...| +.+--.=+.-|+.+-.
T Consensus 13 pIl~vL~~~l~~~~~~vLEiaSGt-GqHa~~FA~-~lP~l~WqPSD~~~~~~~sI~a~~~~~~-~~Nv~~P~~lDv~~~~ 89 (204)
T PF06080_consen 13 PILEVLKQYLPDSGTRVLEIASGT-GQHAVYFAQ-ALPHLTWQPSDPDDNLRPSIRAWIAEAG-LPNVRPPLALDVSAPP 89 (204)
T ss_pred HHHHHHHHHhCccCceEEEEcCCc-cHHHHHHHH-HCCCCEEcCCCCChHHHhhHHHHHHhcC-CcccCCCeEeecCCCC
Confidence 345556665545555799999997 788999998 7999999999999999877777777777 3322233455665433
Q ss_pred ccCC--------CccEEEeccccc-CChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 198 EKLG--------EYDCIFLAALVG-MSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 198 ~~~~--------~fD~V~~aa~v~-~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.++. .||.||.+.+++ ++-+.-+.+++...+.|+|||.|++-.
T Consensus 90 w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 90 WPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred CccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 3333 799999887763 466778899999999999999998843
No 164
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.65 E-value=1.1e-06 Score=79.69 Aligned_cols=90 Identities=18% Similarity=0.322 Sum_probs=62.1
Q ss_pred chhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEE
Q 036061 110 GNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFV 189 (284)
Q Consensus 110 ~ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~ 189 (284)
+||..--..-..++......++.+|||||||++.+|.. |++ .+.+|+++|+|+++++.+++.+.. ..+++++
T Consensus 9 q~fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~-L~~---~~~~v~~iE~d~~~~~~l~~~~~~----~~~v~v~ 80 (253)
T TIGR00755 9 QNFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEP-LLK---RAKKVTAIEIDPRLAEILRKLLSL----YERLEVI 80 (253)
T ss_pred CccCCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHH-HHH---hCCcEEEEECCHHHHHHHHHHhCc----CCcEEEE
Confidence 45542222222333344567889999999998766654 555 345799999999999999987643 2589999
Q ss_pred EeccccccccCCCcc---EEEec
Q 036061 190 TCDIMQVKEKLGEYD---CIFLA 209 (284)
Q Consensus 190 ~~D~~~~~~~~~~fD---~V~~a 209 (284)
++|+.+.+.. .|| .|+.+
T Consensus 81 ~~D~~~~~~~--~~d~~~~vvsN 101 (253)
T TIGR00755 81 EGDALKVDLP--DFPKQLKVVSN 101 (253)
T ss_pred ECchhcCChh--HcCCcceEEEc
Confidence 9999876543 466 55533
No 165
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.64 E-value=3.3e-08 Score=88.25 Aligned_cols=147 Identities=16% Similarity=0.212 Sum_probs=99.3
Q ss_pred HHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--cC
Q 036061 123 LDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--KL 200 (284)
Q Consensus 123 l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--~~ 200 (284)
+.+....+=+++||+|||+ |++..-|-. .-.+.+|+|||+.|+++|.+ +-+ . + +..++|+..+.. ..
T Consensus 118 I~~~~~g~F~~~lDLGCGT-GL~G~~lR~---~a~~ltGvDiS~nMl~kA~e---Kg~-Y-D--~L~~Aea~~Fl~~~~~ 186 (287)
T COG4976 118 IGKADLGPFRRMLDLGCGT-GLTGEALRD---MADRLTGVDISENMLAKAHE---KGL-Y-D--TLYVAEAVLFLEDLTQ 186 (287)
T ss_pred HHhccCCccceeeecccCc-CcccHhHHH---HHhhccCCchhHHHHHHHHh---ccc-h-H--HHHHHHHHHHhhhccC
Confidence 3344445568999999997 788777754 45679999999999999987 322 1 1 344566654443 23
Q ss_pred CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec----CccccccCccCC---Cc-------cCCCcEEEEEe
Q 036061 201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA----KGARAFLYPVVE---KH-------DLLDFELLSVF 266 (284)
Q Consensus 201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~----~glr~~lYp~v~---~~-------dl~gfe~~~~~ 266 (284)
..||+|. ++-|-+....-..++.-+...|+|||.|.+... +| +-.+-|... .+ .-.||+++...
T Consensus 187 er~DLi~-AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~-~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~ 264 (287)
T COG4976 187 ERFDLIV-AADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDG-GFVLGPSQRYAHSESYVRALLAASGLEVIAIE 264 (287)
T ss_pred Ccccchh-hhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCC-CeecchhhhhccchHHHHHHHHhcCceEEEee
Confidence 4699986 555545557788999999999999999999773 22 122333221 11 22799998875
Q ss_pred cC------CcceeeeEEEEeec
Q 036061 267 HP------TNEVINSVVLVRKP 282 (284)
Q Consensus 267 hP------~~~v~nsvi~~r~~ 282 (284)
.- ..+|-.-.+++||+
T Consensus 265 ~ttiR~d~g~pv~G~L~iark~ 286 (287)
T COG4976 265 DTTIRRDAGEPVPGILVIARKK 286 (287)
T ss_pred cccchhhcCCCCCCceEEEecC
Confidence 42 22366668888885
No 166
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.64 E-value=2.5e-07 Score=79.61 Aligned_cols=110 Identities=17% Similarity=0.247 Sum_probs=73.0
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC-CCCCCeEEEEecccccc----ccCCC
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDI-EFEKRMKFVTCDIMQVK----EKLGE 202 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G-~l~~~I~f~~~D~~~~~----~~~~~ 202 (284)
..++++||++|||+ |+.++.+|+ ...+.+|+.-|.++ .++..+.+++..+ ....++++..-|..+-. .....
T Consensus 43 ~~~~~~VLELGaG~-Gl~gi~~a~-~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~ 119 (173)
T PF10294_consen 43 LFRGKRVLELGAGT-GLPGIAAAK-LFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHS 119 (173)
T ss_dssp GTTTSEEEETT-TT-SHHHHHHHH-T-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SS
T ss_pred hcCCceEEEECCcc-chhHHHHHh-ccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccccccc
Confidence 36789999999995 899999998 33688999999999 9999999999865 12468888887754311 12247
Q ss_pred ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
||+|+.+-.+ ...+.-..++.-+.+.++|+|.+++-..
T Consensus 120 ~D~IlasDv~-Y~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 120 FDVILASDVL-YDEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp BSEEEEES---S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred CCEEEEeccc-chHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 9999855433 3457778899999999999998776553
No 167
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.63 E-value=1.3e-07 Score=82.37 Aligned_cols=109 Identities=12% Similarity=0.204 Sum_probs=81.1
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc----CCCcc
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK----LGEYD 204 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~----~~~fD 204 (284)
-.+.++||+=||++.+..-.|.+ .-.+|+.||.|+++++..+++++.+| ..++++++++|+...... ...||
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSR---GA~~v~fVE~~~~a~~~i~~N~~~l~-~~~~~~v~~~d~~~~l~~~~~~~~~fD 116 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSR---GAKSVVFVEKNRKAIKIIKKNLEKLG-LEDKIRVIKGDAFKFLLKLAKKGEKFD 116 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHT---T-SEEEEEES-HHHHHHHHHHHHHHT--GGGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred cCCCeEEEcCCccCccHHHHHhc---CCCeEEEEECCHHHHHHHHHHHHHhC-CCcceeeeccCHHHHHHhhcccCCCce
Confidence 47899999988887777666665 44689999999999999999999999 678899999998755432 35799
Q ss_pred EEEecccccCChHH-HHHHHHHHH--hhcCCCcEEEEEecCc
Q 036061 205 CIFLAALVGMSKEE-KVKIIKHIR--KYMKDGGVLLVRSAKG 243 (284)
Q Consensus 205 ~V~~aa~v~~~~~~-k~~il~~l~--~~l~pGg~lv~r~~~g 243 (284)
+||++.--.. .. ..++++.+. ..|+++|++++.....
T Consensus 117 iIflDPPY~~--~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 117 IIFLDPPYAK--GLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp EEEE--STTS--CHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred EEEECCCccc--chHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 9999974322 33 477888887 7999999999998543
No 168
>PHA03412 putative methyltransferase; Provisional
Probab=98.63 E-value=2.8e-07 Score=83.16 Aligned_cols=99 Identities=13% Similarity=0.170 Sum_probs=69.7
Q ss_pred CCCEEEEeccCCChhHHHHHHhhc--CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061 130 NPKKVAFVGSGPMPLTSIVMAKNH--LKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF 207 (284)
Q Consensus 130 ~~~~VL~IGsG~lp~tai~LA~~~--~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~ 207 (284)
.+.+|||+|||++ .-++.+++.. .+..+|+++|+|+.|++.|++++ .++.++++|+.+... .+.||+|+
T Consensus 49 ~~grVLDlG~GSG-~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-------~~~~~~~~D~~~~~~-~~~FDlII 119 (241)
T PHA03412 49 TSGSVVDLCAGIG-GLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-------PEATWINADALTTEF-DTLFDMAI 119 (241)
T ss_pred CCCEEEEccChHH-HHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-------cCCEEEEcchhcccc-cCCccEEE
Confidence 4679999999974 4456666522 14679999999999999999864 257899999976443 34799999
Q ss_pred eccc-ccCCh----------HHHHHHHHHHHhhcCCCcEEEE
Q 036061 208 LAAL-VGMSK----------EEKVKIIKHIRKYMKDGGVLLV 238 (284)
Q Consensus 208 ~aa~-v~~~~----------~~k~~il~~l~~~l~pGg~lv~ 238 (284)
.+.- ..... ..-.++++...+.+++|+. |+
T Consensus 120 sNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 120 SNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred ECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 8762 21111 1235588888887666665 44
No 169
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.62 E-value=3.4e-07 Score=82.34 Aligned_cols=107 Identities=22% Similarity=0.250 Sum_probs=89.7
Q ss_pred CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC---CCccEEE
Q 036061 131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL---GEYDCIF 207 (284)
Q Consensus 131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~---~~fD~V~ 207 (284)
...+++|||| .|-..+.+|+ ..|...+.|||+....+..|.+.+.+.|+ ++++++++|+.++...+ ++.|-|+
T Consensus 49 ~pi~lEIGfG-~G~~l~~~A~-~nP~~nfiGiEi~~~~v~~~l~k~~~~~l--~Nlri~~~DA~~~l~~~~~~~sl~~I~ 124 (227)
T COG0220 49 APIVLEIGFG-MGEFLVEMAK-KNPEKNFLGIEIRVPGVAKALKKIKELGL--KNLRLLCGDAVEVLDYLIPDGSLDKIY 124 (227)
T ss_pred CcEEEEECCC-CCHHHHHHHH-HCCCCCEEEEEEehHHHHHHHHHHHHcCC--CcEEEEcCCHHHHHHhcCCCCCeeEEE
Confidence 3689999999 5777788898 68999999999999999999999999994 49999999999876533 3789888
Q ss_pred ecccccCChHHH-------HHHHHHHHhhcCCCcEEEEEec
Q 036061 208 LAALVGMSKEEK-------VKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 208 ~aa~v~~~~~~k-------~~il~~l~~~l~pGg~lv~r~~ 241 (284)
+.---.|++.-. ..+++.+++.|+|||.|-+.+-
T Consensus 125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 776556654332 6789999999999999999884
No 170
>PRK00536 speE spermidine synthase; Provisional
Probab=98.62 E-value=3.8e-07 Score=83.65 Aligned_cols=100 Identities=18% Similarity=0.216 Sum_probs=75.2
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CCCCCCeEEEEeccccccccCCCccEE
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD--IEFEKRMKFVTCDIMQVKEKLGEYDCI 206 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--G~l~~~I~f~~~D~~~~~~~~~~fD~V 206 (284)
..|+|||.||+|- |.++.-+.| | + .+|+-+|||++.++.|++.+-.. +.-..|++++. ...+ ...+.||+|
T Consensus 71 ~~pk~VLIiGGGD-Gg~~REvLk-h-~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~~--~~~~~fDVI 143 (262)
T PRK00536 71 KELKEVLIVDGFD-LELAHQLFK-Y-D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLLD--LDIKKYDLI 143 (262)
T ss_pred CCCCeEEEEcCCc-hHHHHHHHC-c-C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhhh--ccCCcCCEE
Confidence 6789999999997 556777777 2 3 49999999999999999954321 21246888875 2221 112579999
Q ss_pred EecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
+++++- ...+++.+.+.|+|||++++.++
T Consensus 144 IvDs~~------~~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 144 ICLQEP------DIHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred EEcCCC------ChHHHHHHHHhcCCCcEEEECCC
Confidence 999763 14677999999999999999774
No 171
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.62 E-value=4.6e-07 Score=82.60 Aligned_cols=75 Identities=17% Similarity=0.240 Sum_probs=59.5
Q ss_pred cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061 126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC 205 (284)
Q Consensus 126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~ 205 (284)
....++.+|||||||++.+| ..+++ .+.+|+++|+|+.+++.+++.+... .+++++++|+.+++ +..||.
T Consensus 25 ~~~~~~~~VLEIG~G~G~lt-~~L~~---~~~~v~~vEid~~~~~~l~~~~~~~----~~v~ii~~D~~~~~--~~~~d~ 94 (258)
T PRK14896 25 AEDTDGDPVLEIGPGKGALT-DELAK---RAKKVYAIELDPRLAEFLRDDEIAA----GNVEIIEGDALKVD--LPEFNK 94 (258)
T ss_pred cCCCCcCeEEEEeCccCHHH-HHHHH---hCCEEEEEECCHHHHHHHHHHhccC----CCEEEEEeccccCC--chhceE
Confidence 35567899999999986555 55666 3679999999999999999987542 48999999998754 346898
Q ss_pred EEecc
Q 036061 206 IFLAA 210 (284)
Q Consensus 206 V~~aa 210 (284)
|+.+.
T Consensus 95 Vv~Nl 99 (258)
T PRK14896 95 VVSNL 99 (258)
T ss_pred EEEcC
Confidence 88653
No 172
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.61 E-value=1.7e-07 Score=91.95 Aligned_cols=126 Identities=17% Similarity=0.238 Sum_probs=85.9
Q ss_pred CCcchhhhhhHHHHHHHHhcCCC-----CCCEEEEeccCCChhHHHHHHh--hcCCCcEEEEEeCChHHHHHHHHHHHhc
Q 036061 107 PYYGNYVKLANLEYRILDENGVV-----NPKKVAFVGSGPMPLTSIVMAK--NHLKSTHFDNFDIDEAANDVARQIVSSD 179 (284)
Q Consensus 107 py~~ny~~l~~~E~~~l~~~~~~-----~~~~VL~IGsG~lp~tai~LA~--~~~~g~~V~~iDid~~ai~~Ar~~~~~~ 179 (284)
-.|+.|++-+.. +|...... ++..|++||||.||++...+.. ++....+|.+|+.++.|+...++.+++.
T Consensus 161 vKY~~Ye~AI~~---al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n 237 (448)
T PF05185_consen 161 VKYDQYERAIEE---ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNAN 237 (448)
T ss_dssp HHHHHHHHHHHH---HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH---HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhc
Confidence 355667766533 22222222 3578999999999997554422 1123468999999999999999988888
Q ss_pred CCCCCCeEEEEeccccccccCCCccEEEeccc--ccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061 180 IEFEKRMKFVTCDIMQVKEKLGEYDCIFLAAL--VGMSKEEKVKIIKHIRKYMKDGGVLLV 238 (284)
Q Consensus 180 G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~--v~~~~~~k~~il~~l~~~l~pGg~lv~ 238 (284)
| ++++|+++.+|.+++..+. ..|+|+..-+ .| +-|--.+.+....|.|||||+++=
T Consensus 238 ~-w~~~V~vi~~d~r~v~lpe-kvDIIVSElLGsfg-~nEl~pE~Lda~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 238 G-WGDKVTVIHGDMREVELPE-KVDIIVSELLGSFG-DNELSPECLDAADRFLKPDGIMIP 295 (448)
T ss_dssp T-TTTTEEEEES-TTTSCHSS--EEEEEE---BTTB-TTTSHHHHHHHGGGGEEEEEEEES
T ss_pred C-CCCeEEEEeCcccCCCCCC-ceeEEEEeccCCcc-ccccCHHHHHHHHhhcCCCCEEeC
Confidence 8 7999999999999877643 7999974322 12 223445688999999999998764
No 173
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.60 E-value=2.9e-07 Score=88.76 Aligned_cols=101 Identities=16% Similarity=0.148 Sum_probs=78.8
Q ss_pred CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061 131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA 210 (284)
Q Consensus 131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa 210 (284)
+.+|||++||.+.+ ++.+|+. ....+|+++|+|+++++.++++++..| + +.+++.++|+.++......||+|+++.
T Consensus 58 ~~~vLDl~aGsG~~-~l~~a~~-~~~~~V~a~Din~~Av~~a~~N~~~N~-~-~~~~v~~~Da~~~l~~~~~fD~V~lDP 133 (382)
T PRK04338 58 RESVLDALSASGIR-GIRYALE-TGVEKVTLNDINPDAVELIKKNLELNG-L-ENEKVFNKDANALLHEERKFDVVDIDP 133 (382)
T ss_pred CCEEEECCCcccHH-HHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHhC-C-CceEEEhhhHHHHHhhcCCCCEEEECC
Confidence 46999999997554 5666652 233589999999999999999999998 4 467899999977554234699999987
Q ss_pred cccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 211 LVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 211 ~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
. |. ...+++...+.+++||++.+..
T Consensus 134 ~-Gs----~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 134 F-GS----PAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred C-CC----cHHHHHHHHHHhcCCCEEEEEe
Confidence 5 43 2467888777889999998864
No 174
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.59 E-value=2e-07 Score=83.81 Aligned_cols=119 Identities=24% Similarity=0.275 Sum_probs=82.8
Q ss_pred HHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCC--cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccc
Q 036061 117 NLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKS--THFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIM 194 (284)
Q Consensus 117 ~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g--~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~ 194 (284)
..|+..|.......+.+||+||||. |-|..-+-+ ..++ -.|.+.|.||.|++.-++..... ++++.--+.|++
T Consensus 58 ~~Efpel~~~~~~~~~~ilEvGCGv-GNtvfPll~-~~~n~~l~v~acDfsp~Ai~~vk~~~~~~---e~~~~afv~Dlt 132 (264)
T KOG2361|consen 58 LREFPELLPVDEKSAETILEVGCGV-GNTVFPLLK-TSPNNRLKVYACDFSPRAIELVKKSSGYD---ESRVEAFVWDLT 132 (264)
T ss_pred HHhhHHhhCccccChhhheeeccCC-Ccccchhhh-cCCCCCeEEEEcCCChHHHHHHHhccccc---hhhhcccceecc
Confidence 3456655555555556999999995 566665555 3444 88999999999999999866543 356666666665
Q ss_pred ccc----ccCCCccEEEecc-cccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 195 QVK----EKLGEYDCIFLAA-LVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 195 ~~~----~~~~~fD~V~~aa-~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.-. ...+.+|.+.+-- +-..+++.-..+++.+.+++||||.|++|+
T Consensus 133 ~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 133 SPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred chhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEee
Confidence 311 1224688764221 112345667889999999999999999997
No 175
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.59 E-value=2.9e-07 Score=85.38 Aligned_cols=108 Identities=20% Similarity=0.276 Sum_probs=79.5
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCC-CCeEEEEecccccccc---CCCc
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFE-KRMKFVTCDIMQVKEK---LGEY 203 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~-~~I~f~~~D~~~~~~~---~~~f 203 (284)
..+++||++=|=++|+|.. .|+ .|+ +|+++|.|..++++|+++++-.| +. ++++|+++|+.+.... .+.|
T Consensus 122 ~~gkrvLnlFsYTGgfsv~-Aa~---gGA~~v~~VD~S~~al~~a~~N~~lNg-~~~~~~~~~~~Dvf~~l~~~~~~~~f 196 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVA-AAA---GGAKEVVSVDSSKRALEWAKENAALNG-LDLDRHRFIQGDVFKFLKRLKKGGRF 196 (286)
T ss_dssp CTTCEEEEET-TTTHHHHH-HHH---TTESEEEEEES-HHHHHHHHHHHHHTT--CCTCEEEEES-HHHHHHHHHHTT-E
T ss_pred cCCCceEEecCCCCHHHHH-HHH---CCCCEEEEEeCCHHHHHHHHHHHHHcC-CCccceEEEecCHHHHHHHHhcCCCC
Confidence 4689999999988777643 334 566 79999999999999999999999 44 7999999999875432 3579
Q ss_pred cEEEeccc--c-cC--ChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 204 DCIFLAAL--V-GM--SKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 204 D~V~~aa~--v-~~--~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
|+|+++.- . +- -..++.+++..+.+.++|||.|++-+-
T Consensus 197 D~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 197 DLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp EEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 99998862 2 11 124567899999999999999887663
No 176
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.58 E-value=7.7e-07 Score=77.02 Aligned_cols=122 Identities=18% Similarity=0.144 Sum_probs=79.3
Q ss_pred hcCCCCCCEEEEeccCCC--hhHHHHHHhhcCC-----CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc
Q 036061 125 ENGVVNPKKVAFVGSGPM--PLTSIVMAKNHLK-----STHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK 197 (284)
Q Consensus 125 ~~~~~~~~~VL~IGsG~l--p~tai~LA~~~~~-----g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~ 197 (284)
-.+..++..|+|--||++ ++-+..++....+ ..++.|.|+|+++++.|+++++..| +...|.|.++|+.+++
T Consensus 23 la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag-~~~~i~~~~~D~~~l~ 101 (179)
T PF01170_consen 23 LAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG-VEDYIDFIQWDARELP 101 (179)
T ss_dssp HTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT--CGGEEEEE--GGGGG
T ss_pred HhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc-cCCceEEEecchhhcc
Confidence 345678889999877754 3333333331110 1138999999999999999999999 7889999999999988
Q ss_pred ccCCCccEEEecccccCCh-------HHHHHHHHHHHhhcCCCcEEEEEecCccccc
Q 036061 198 EKLGEYDCIFLAALVGMSK-------EEKVKIIKHIRKYMKDGGVLLVRSAKGARAF 247 (284)
Q Consensus 198 ~~~~~fD~V~~aa~v~~~~-------~~k~~il~~l~~~l~pGg~lv~r~~~glr~~ 247 (284)
...+.+|+|+.+.--|.-. .-+.++++++.+.+++..++++.....+...
T Consensus 102 ~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~~~~~~ 158 (179)
T PF01170_consen 102 LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNRELEKA 158 (179)
T ss_dssp GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCCCHHHH
T ss_pred cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence 5456799999886433211 2236778999999999666666654444443
No 177
>PRK04148 hypothetical protein; Provisional
Probab=98.57 E-value=8.9e-07 Score=73.33 Aligned_cols=94 Identities=15% Similarity=0.160 Sum_probs=69.8
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CCccEEE
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~fD~V~ 207 (284)
.++.+|++||||.+.-.|..|++ .|..|+++|+||++++.|+++ + ++++++|+.+-...+ ..+|+|+
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~---~G~~ViaIDi~~~aV~~a~~~----~-----~~~v~dDlf~p~~~~y~~a~liy 82 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKE---SGFDVIVIDINEKAVEKAKKL----G-----LNAFVDDLFNPNLEIYKNAKLIY 82 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHH---CCCEEEEEECCHHHHHHHHHh----C-----CeEEECcCCCCCHHHHhcCCEEE
Confidence 45689999999953337778887 799999999999999988773 3 589999998755554 4799998
Q ss_pred ecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.... +.+-..-+..+++.+. +-++++.
T Consensus 83 sirp----p~el~~~~~~la~~~~--~~~~i~~ 109 (134)
T PRK04148 83 SIRP----PRDLQPFILELAKKIN--VPLIIKP 109 (134)
T ss_pred EeCC----CHHHHHHHHHHHHHcC--CCEEEEc
Confidence 5543 2556666777777654 4555554
No 178
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.57 E-value=4.1e-07 Score=79.46 Aligned_cols=88 Identities=11% Similarity=0.160 Sum_probs=66.1
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--cCCCccE
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--KLGEYDC 205 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--~~~~fD~ 205 (284)
+.+++||||+|||.+-+- .+|.+ ..+++..|+|+|++.+..+.+ +.+.++++|+.+-.. +.+.||.
T Consensus 11 I~pgsrVLDLGCGdG~LL-~~L~~--~k~v~g~GvEid~~~v~~cv~---------rGv~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELL-AYLKD--EKQVDGYGVEIDPDNVAACVA---------RGVSVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred cCCCCEEEecCCCchHHH-HHHHH--hcCCeEEEEecCHHHHHHHHH---------cCCCEEECCHHHhHhhCCCCCccE
Confidence 478999999999975443 33433 479999999999999877765 356899999976553 3457999
Q ss_pred EEecccc-cCChHHHHHHHHHHHhh
Q 036061 206 IFLAALV-GMSKEEKVKIIKHIRKY 229 (284)
Q Consensus 206 V~~aa~v-~~~~~~k~~il~~l~~~ 229 (284)
|+++..+ .+ ....++|+++.|.
T Consensus 79 VIlsqtLQ~~--~~P~~vL~EmlRV 101 (193)
T PF07021_consen 79 VILSQTLQAV--RRPDEVLEEMLRV 101 (193)
T ss_pred EehHhHHHhH--hHHHHHHHHHHHh
Confidence 9988755 32 4456788998776
No 179
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.57 E-value=3.7e-07 Score=82.15 Aligned_cols=108 Identities=19% Similarity=0.347 Sum_probs=75.0
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCC------------------------
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEK------------------------ 184 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~------------------------ 184 (284)
-.+..+|||||-. |.-++.+|+ .+..-.|.|+|||+..++.|++.++.--..+.
T Consensus 57 f~~~~~LDIGCNs-G~lt~~iak-~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 57 FEPKQALDIGCNS-GFLTLSIAK-DFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred cCcceeEeccCCc-chhHHHHHH-hhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 4678999999986 666778898 44445699999999999999998865321111
Q ss_pred ---------CeEE-------EEeccccccccCCCccEEEeccc---c--cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 185 ---------RMKF-------VTCDIMQVKEKLGEYDCIFLAAL---V--GMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 185 ---------~I~f-------~~~D~~~~~~~~~~fD~V~~aa~---v--~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
++.| ...|.. ......||+|+.-+. | .+..+--.+++..++++|.|||+||+.-
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred ccccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 1111 111211 112347999985542 3 3445666789999999999999999964
No 180
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.57 E-value=3.8e-07 Score=86.31 Aligned_cols=110 Identities=20% Similarity=0.247 Sum_probs=72.6
Q ss_pred CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC--------CCCCeEEEEecccccc----
Q 036061 130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE--------FEKRMKFVTCDIMQVK---- 197 (284)
Q Consensus 130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~--------l~~~I~f~~~D~~~~~---- 197 (284)
++.+|||+|||-+|..-=|. + ..-..++|+||++++++.|++..+.+.. ..-...|+++|.....
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~-~--~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~ 138 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQ-K--AKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREK 138 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHH-H--TT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCT
T ss_pred CCCeEEEecCCCchhHHHHH-h--cCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhh
Confidence 78999999999877654443 3 2457899999999999999998833210 1124578888886421
Q ss_pred -cc-CCCccEEEecc-cc-cCChHHHHH-HHHHHHhhcCCCcEEEEEecC
Q 036061 198 -EK-LGEYDCIFLAA-LV-GMSKEEKVK-IIKHIRKYMKDGGVLLVRSAK 242 (284)
Q Consensus 198 -~~-~~~fD~V~~aa-~v-~~~~~~k~~-il~~l~~~l~pGg~lv~r~~~ 242 (284)
.+ ...||+|=... +. ....+++.+ +|+.+.+.|+|||+++....+
T Consensus 139 ~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 139 LPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp SSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred ccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 11 13799994332 22 233355555 999999999999999997754
No 181
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.57 E-value=5.8e-07 Score=86.00 Aligned_cols=96 Identities=10% Similarity=0.194 Sum_probs=71.0
Q ss_pred CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC----------
Q 036061 131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL---------- 200 (284)
Q Consensus 131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~---------- 200 (284)
+.+|||++||.+.++ +.+|+ ...+|++||+|+.|++.|+++++..| + ++++|+++|+.+....+
T Consensus 207 ~~~vLDl~~G~G~~s-l~la~---~~~~v~~vE~~~~ai~~a~~N~~~~~-~-~~v~~~~~d~~~~l~~~~~~~~~~~~~ 280 (362)
T PRK05031 207 KGDLLELYCGNGNFT-LALAR---NFRRVLATEISKPSVAAAQYNIAANG-I-DNVQIIRMSAEEFTQAMNGVREFNRLK 280 (362)
T ss_pred CCeEEEEeccccHHH-HHHHh---hCCEEEEEECCHHHHHHHHHHHHHhC-C-CcEEEEECCHHHHHHHHhhcccccccc
Confidence 468999999985554 58887 34689999999999999999999999 4 58999999998754321
Q ss_pred ------CCccEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061 201 ------GEYDCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVR 239 (284)
Q Consensus 201 ------~~fD~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r 239 (284)
..||+||++.-= |+ ..++++.+.+ |++++.+.
T Consensus 281 ~~~~~~~~~D~v~lDPPR~G~----~~~~l~~l~~---~~~ivyvS 319 (362)
T PRK05031 281 GIDLKSYNFSTIFVDPPRAGL----DDETLKLVQA---YERILYIS 319 (362)
T ss_pred cccccCCCCCEEEECCCCCCC----cHHHHHHHHc---cCCEEEEE
Confidence 148999998642 32 3456666654 55554443
No 182
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.55 E-value=2.7e-07 Score=85.64 Aligned_cols=115 Identities=17% Similarity=0.235 Sum_probs=84.2
Q ss_pred CCCEEEEeccCCC--hhHHHHHHhhcC----CCcEEEEEeCChHHHHHHHHHH------------------Hhc-----C
Q 036061 130 NPKKVAFVGSGPM--PLTSIVMAKNHL----KSTHFDNFDIDEAANDVARQIV------------------SSD-----I 180 (284)
Q Consensus 130 ~~~~VL~IGsG~l--p~tai~LA~~~~----~g~~V~~iDid~~ai~~Ar~~~------------------~~~-----G 180 (284)
.+-||.-.||+++ |+|-.++..... .+.+|+|.|||+.+++.|++-+ .+. |
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 3579999999864 455444333221 1478999999999999999752 110 1
Q ss_pred ------CCCCCeEEEEecccccccc-CCCccEEEecc-cccCChHHHHHHHHHHHhhcCCCcEEEEEecCcc
Q 036061 181 ------EFEKRMKFVTCDIMQVKEK-LGEYDCIFLAA-LVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGA 244 (284)
Q Consensus 181 ------~l~~~I~f~~~D~~~~~~~-~~~fD~V~~aa-~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~gl 244 (284)
.+.++|+|...|+.+.+.+ .+.||+|+.-. ++..+.+.+.++++.+++.|+|||.|++-....+
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sEsl 266 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSENF 266 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCcccc
Confidence 0347899999999874332 46899999643 4466889999999999999999999988765544
No 183
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.53 E-value=1e-06 Score=84.00 Aligned_cols=96 Identities=10% Similarity=0.161 Sum_probs=70.4
Q ss_pred CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc------C---C
Q 036061 131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK------L---G 201 (284)
Q Consensus 131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~------~---~ 201 (284)
+.+|||+|||++ .-++.||+ ...+|+++|++++|++.|+++++..| + ++++|+++|+.++... + +
T Consensus 198 ~~~vlDl~~G~G-~~sl~la~---~~~~v~~vE~~~~av~~a~~n~~~~~-~-~~v~~~~~d~~~~~~~~~~~~~~~~~~ 271 (353)
T TIGR02143 198 KGDLLELYCGNG-NFSLALAQ---NFRRVLATEIAKPSVNAAQYNIAANN-I-DNVQIIRMSAEEFTQAMNGVREFRRLK 271 (353)
T ss_pred CCcEEEEecccc-HHHHHHHH---hCCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEEcCHHHHHHHHhhcccccccc
Confidence 357999999975 55568888 23589999999999999999999999 4 4799999999875542 1 1
Q ss_pred -------CccEEEeccc-ccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061 202 -------EYDCIFLAAL-VGMSKEEKVKIIKHIRKYMKDGGVLLVR 239 (284)
Q Consensus 202 -------~fD~V~~aa~-v~~~~~~k~~il~~l~~~l~pGg~lv~r 239 (284)
.||+||++.- .|+ ..++++.+.+ |++++.+.
T Consensus 272 ~~~~~~~~~d~v~lDPPR~G~----~~~~l~~l~~---~~~ivYvs 310 (353)
T TIGR02143 272 GIDLKSYNCSTIFVDPPRAGL----DPDTCKLVQA---YERILYIS 310 (353)
T ss_pred ccccccCCCCEEEECCCCCCC----cHHHHHHHHc---CCcEEEEE
Confidence 3899999864 232 2345566554 55554443
No 184
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.52 E-value=9.2e-08 Score=85.65 Aligned_cols=137 Identities=18% Similarity=0.255 Sum_probs=96.0
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC--CCc
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL--GEY 203 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~--~~f 203 (284)
.++.+.+|||.+.| +|+||+.-++ .|+ +|..|+.||..+++|.-|==.-++.+..|+++.||+.++..++ ..|
T Consensus 131 ~~~~G~rVLDtC~G-LGYtAi~a~~---rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sf 206 (287)
T COG2521 131 KVKRGERVLDTCTG-LGYTAIEALE---RGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESF 206 (287)
T ss_pred ccccCCEeeeeccC-ccHHHHHHHH---cCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCcccc
Confidence 35679999999999 8999999877 888 9999999999999987664333434557899999999877655 469
Q ss_pred cEEEecccc-cCChHH-HHHHHHHHHhhcCCCcEEEEEecCccccccCccCCCc-----cC--CCcEEEEEecCC
Q 036061 204 DCIFLAALV-GMSKEE-KVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVEKH-----DL--LDFELLSVFHPT 269 (284)
Q Consensus 204 D~V~~aa~v-~~~~~~-k~~il~~l~~~l~pGg~lv~r~~~glr~~lYp~v~~~-----dl--~gfe~~~~~hP~ 269 (284)
|+|+-+.-- ...-+- -.++.++++|.|+|||.+.=-.++.-+ .|--.|.. .| .||+++....-.
T Consensus 207 DaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~--ryrG~d~~~gVa~RLr~vGF~~v~~~~~~ 279 (287)
T COG2521 207 DAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGK--RYRGLDLPKGVAERLRRVGFEVVKKVREA 279 (287)
T ss_pred ceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCc--ccccCChhHHHHHHHHhcCceeeeeehhc
Confidence 999866421 000022 267899999999999998543333211 12222221 12 699987765543
No 185
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.52 E-value=3.8e-06 Score=77.67 Aligned_cols=122 Identities=13% Similarity=0.156 Sum_probs=91.8
Q ss_pred hhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCC--cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe
Q 036061 114 KLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKS--THFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC 191 (284)
Q Consensus 114 ~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g--~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~ 191 (284)
.+++.....|.. ...|-+|+||.||++-+-.=.+.+ .+. .+|.-.|.||..++.+++++++.| +++-++|+++
T Consensus 121 ~~i~~ai~~L~~--~g~pvrIlDIAaG~GRYvlDal~~--~~~~~~~i~LrDys~~Nv~~g~~li~~~g-L~~i~~f~~~ 195 (311)
T PF12147_consen 121 ELIRQAIARLRE--QGRPVRILDIAAGHGRYVLDALEK--HPERPDSILLRDYSPINVEKGRALIAERG-LEDIARFEQG 195 (311)
T ss_pred HHHHHHHHHHHh--cCCceEEEEeccCCcHHHHHHHHh--CCCCCceEEEEeCCHHHHHHHHHHHHHcC-CccceEEEec
Confidence 334444444422 257889999999997775555555 343 789999999999999999999999 7888899999
Q ss_pred ccccccc--cCC-CccEEEecccccC--ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 192 DIMQVKE--KLG-EYDCIFLAALVGM--SKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 192 D~~~~~~--~~~-~fD~V~~aa~v~~--~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
|+.+... .+. ..|+++++.+... +.+.-.+.+..+.+.+.|||.+|+..
T Consensus 196 dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 196 DAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred CCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 9987422 222 4799998876522 32334567999999999999999966
No 186
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.50 E-value=5.6e-07 Score=80.19 Aligned_cols=99 Identities=16% Similarity=0.173 Sum_probs=83.0
Q ss_pred CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061 131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA 210 (284)
Q Consensus 131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa 210 (284)
+++++|||||+ |+.++.||= ..|+.+||-+|...+.+..=+++.+.+|. ++++++++.+.+.......||+|..=|
T Consensus 68 ~~~~~DIGSGa-GfPGipLAI-~~p~~~vtLles~~Kk~~FL~~~~~eL~L--~nv~i~~~RaE~~~~~~~~~D~vtsRA 143 (215)
T COG0357 68 AKRVLDIGSGA-GFPGIPLAI-AFPDLKVTLLESLGKKIAFLREVKKELGL--ENVEIVHGRAEEFGQEKKQYDVVTSRA 143 (215)
T ss_pred CCEEEEeCCCC-CCchhhHHH-hccCCcEEEEccCchHHHHHHHHHHHhCC--CCeEEehhhHhhcccccccCcEEEeeh
Confidence 68999999996 899999884 57999999999999999999999999995 679999999988665432299998655
Q ss_pred cccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061 211 LVGMSKEEKVKIIKHIRKYMKDGGVLLV 238 (284)
Q Consensus 211 ~v~~~~~~k~~il~~l~~~l~pGg~lv~ 238 (284)
. ..-..+++-....+++||.++.
T Consensus 144 v-----a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 144 V-----ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred c-----cchHHHHHHHHHhcccCCcchh
Confidence 5 3445688888999999887654
No 187
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=1.5e-07 Score=78.65 Aligned_cols=81 Identities=23% Similarity=0.341 Sum_probs=64.9
Q ss_pred cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061 126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC 205 (284)
Q Consensus 126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~ 205 (284)
.+.-.+++++++|||+ |+-++..+ .+..-.|.|+||||+|++.+++++..+-. ++.+.++|+.+.....+.||.
T Consensus 44 ygdiEgkkl~DLgcgc-GmLs~a~s--m~~~e~vlGfDIdpeALEIf~rNaeEfEv---qidlLqcdildle~~~g~fDt 117 (185)
T KOG3420|consen 44 YGDIEGKKLKDLGCGC-GMLSIAFS--MPKNESVLGFDIDPEALEIFTRNAEEFEV---QIDLLQCDILDLELKGGIFDT 117 (185)
T ss_pred hccccCcchhhhcCch-hhhHHHhh--cCCCceEEeeecCHHHHHHHhhchHHhhh---hhheeeeeccchhccCCeEee
Confidence 3557889999999996 55444333 35556799999999999999999999774 789999999987776677999
Q ss_pred EEecccc
Q 036061 206 IFLAALV 212 (284)
Q Consensus 206 V~~aa~v 212 (284)
++.+.-.
T Consensus 118 aviNppF 124 (185)
T KOG3420|consen 118 AVINPPF 124 (185)
T ss_pred EEecCCC
Confidence 8877643
No 188
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.49 E-value=6.7e-07 Score=79.61 Aligned_cols=101 Identities=15% Similarity=0.246 Sum_probs=73.1
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccc-cccccCCCccEEE
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIM-QVKEKLGEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~-~~~~~~~~fD~V~ 207 (284)
..+.-|||||||+ |+++-.|.. .|...+|+||||.|++.|.+.- -.| .++.+|.- -+++..+.||-|+
T Consensus 49 ~~~~~iLDIGCGs-GLSg~vL~~---~Gh~wiGvDiSpsML~~a~~~e-~eg------dlil~DMG~GlpfrpGtFDg~I 117 (270)
T KOG1541|consen 49 PKSGLILDIGCGS-GLSGSVLSD---SGHQWIGVDISPSMLEQAVERE-LEG------DLILCDMGEGLPFRPGTFDGVI 117 (270)
T ss_pred CCCcEEEEeccCC-Ccchheecc---CCceEEeecCCHHHHHHHHHhh-hhc------CeeeeecCCCCCCCCCccceEE
Confidence 3578999999997 899988876 8999999999999999999711 113 34455543 3555667899887
Q ss_pred ecccc--cC--------ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 208 LAALV--GM--------SKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 208 ~aa~v--~~--------~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.-+.| .+ +..--..++..++..|++|++-++-.
T Consensus 118 SISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 118 SISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred EeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 43322 11 11222567888999999999998865
No 189
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.48 E-value=6.8e-07 Score=82.19 Aligned_cols=76 Identities=13% Similarity=0.158 Sum_probs=56.3
Q ss_pred hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061 125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD 204 (284)
Q Consensus 125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD 204 (284)
.....++.+|||||||+|.+| ..+++ .+.+|+++|+|+++++.+++.+.. .+++++++|+.++..+.-.+|
T Consensus 37 ~l~~~~~~~VLEiG~G~G~lt-~~L~~---~~~~v~avE~d~~~~~~~~~~~~~-----~~v~~i~~D~~~~~~~~~~~~ 107 (272)
T PRK00274 37 AAGPQPGDNVLEIGPGLGALT-EPLLE---RAAKVTAVEIDRDLAPILAETFAE-----DNLTIIEGDALKVDLSELQPL 107 (272)
T ss_pred hcCCCCcCeEEEeCCCccHHH-HHHHH---hCCcEEEEECCHHHHHHHHHhhcc-----CceEEEEChhhcCCHHHcCcc
Confidence 335578899999999986555 55666 245999999999999999986532 489999999987654211146
Q ss_pred EEEec
Q 036061 205 CIFLA 209 (284)
Q Consensus 205 ~V~~a 209 (284)
.|+.+
T Consensus 108 ~vv~N 112 (272)
T PRK00274 108 KVVAN 112 (272)
T ss_pred eEEEe
Confidence 76654
No 190
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.48 E-value=2.1e-06 Score=74.85 Aligned_cols=110 Identities=15% Similarity=0.224 Sum_probs=84.3
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCC---CccE
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLG---EYDC 205 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~---~fD~ 205 (284)
-.+.++||+=+|.+.+..-.+.+ ...+++.||.|.++....+++++.+| +..+++++..|+...+...+ .||+
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSR---GA~~~~~vE~~~~a~~~l~~N~~~l~-~~~~~~~~~~da~~~L~~~~~~~~FDl 117 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSR---GAARVVFVEKDRKAVKILKENLKALG-LEGEARVLRNDALRALKQLGTREPFDL 117 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhC---CCceEEEEecCHHHHHHHHHHHHHhC-CccceEEEeecHHHHHHhcCCCCcccE
Confidence 56899999866666666666666 56789999999999999999999999 78899999999986543332 3999
Q ss_pred EEecccccCChHHHHHHHHH--HHhhcCCCcEEEEEecC
Q 036061 206 IFLAALVGMSKEEKVKIIKH--IRKYMKDGGVLLVRSAK 242 (284)
Q Consensus 206 V~~aa~v~~~~~~k~~il~~--l~~~l~pGg~lv~r~~~ 242 (284)
||++.--+...-++...+.. -...|+|||.+++....
T Consensus 118 VflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 118 VFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred EEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 99997543333444444444 45669999999999854
No 191
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.48 E-value=3.9e-07 Score=87.20 Aligned_cols=162 Identities=16% Similarity=0.178 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHhhHhhhHHHHHHhcCCCCcccccccCCCcchhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHH
Q 036061 67 VQEMRESLIVLCGRAEGLLELEFATFFAKTPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTS 146 (284)
Q Consensus 67 ~~~l~~~l~~l~~~~e~~lE~~~a~~l~~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~ta 146 (284)
...+.+.+-++++..+...|..|...++.++. + .+-.+.....+.|--...+.+..++.+++++||| +|-.+
T Consensus 54 ~~~~~e~~~~~y~~~~dl~~~~w~~~~h~~~~-~------e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g-~~~~~ 125 (364)
T KOG1269|consen 54 TEDLPEQIAKYYNNSTDLYERNWGQSFHFGRI-P------EGNSNEMFWIRHEGIVALRESCFPGSKVLDVGTG-VGGPS 125 (364)
T ss_pred ccccchHHHHHhcccchhhhhhhccchhccCc-c------chhHHHHHHHhhcchHHHhhcCcccccccccCcC-cCchh
Confidence 33556778888888899999999999988766 2 2223333333333333334566788899999999 45566
Q ss_pred HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecccccCChHHHHHHHHHH
Q 036061 147 IVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHI 226 (284)
Q Consensus 147 i~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l 226 (284)
..++. +.++.++|+|.++.-+.++.......+ +.++-.|+.+|....+.+...||.|.+.-. +...+....+++++
T Consensus 126 ~~i~~--f~~~~~~Gl~~n~~e~~~~~~~~~~~~-l~~k~~~~~~~~~~~~fedn~fd~v~~ld~-~~~~~~~~~~y~Ei 201 (364)
T KOG1269|consen 126 RYIAV--FKKAGVVGLDNNAYEAFRANELAKKAY-LDNKCNFVVADFGKMPFEDNTFDGVRFLEV-VCHAPDLEKVYAEI 201 (364)
T ss_pred HHHHH--hccCCccCCCcCHHHHHHHHHHHHHHH-hhhhcceehhhhhcCCCCccccCcEEEEee-cccCCcHHHHHHHH
Confidence 77776 688999999999999999999999888 788888899999988888889999974322 23447788899999
Q ss_pred HhhcCCCcEEEEEe
Q 036061 227 RKYMKDGGVLLVRS 240 (284)
Q Consensus 227 ~~~l~pGg~lv~r~ 240 (284)
+|+++|||+++.-.
T Consensus 202 ~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 202 YRVLKPGGLFIVKE 215 (364)
T ss_pred hcccCCCceEEeHH
Confidence 99999999999854
No 192
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.44 E-value=3.4e-06 Score=77.62 Aligned_cols=115 Identities=19% Similarity=0.322 Sum_probs=85.4
Q ss_pred CCCEEEEeccCCC--hhHHHHHHhhcCC-----CcEEEEEeCChHHHHHHHHHHH-------------------hcCC--
Q 036061 130 NPKKVAFVGSGPM--PLTSIVMAKNHLK-----STHFDNFDIDEAANDVARQIVS-------------------SDIE-- 181 (284)
Q Consensus 130 ~~~~VL~IGsG~l--p~tai~LA~~~~~-----g~~V~~iDid~~ai~~Ar~~~~-------------------~~G~-- 181 (284)
.+-||.-+||+++ |+|..++...+.+ ..+|++.|||..+++.|++-+= +.+.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 5789999999854 5664444443443 6899999999999999975321 1110
Q ss_pred ------CCCCeEEEEeccccccccCCCccEEEecc-cccCChHHHHHHHHHHHhhcCCCcEEEEEecCcc
Q 036061 182 ------FEKRMKFVTCDIMQVKEKLGEYDCIFLAA-LVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGA 244 (284)
Q Consensus 182 ------l~~~I~f~~~D~~~~~~~~~~fD~V~~aa-~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~gl 244 (284)
+.+.|+|...|+.+-....+.||+||+=. ++-++.+.+.++++.++..|+|||.|++-....+
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE~~ 245 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSETI 245 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCccc
Confidence 12568888888876443456799999654 4477889999999999999999999999775544
No 193
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.41 E-value=3.2e-06 Score=79.96 Aligned_cols=108 Identities=18% Similarity=0.103 Sum_probs=85.6
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe-ccccccccCCCccEE
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC-DIMQVKEKLGEYDCI 206 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~-D~~~~~~~~~~fD~V 206 (284)
..+|..|||==||++|+ ++=| -+.|++++|.|+|..|++-|+.|++..|. ....+..+ |+++++.+...+|.|
T Consensus 195 v~~G~~vlDPFcGTGgi--LiEa--gl~G~~viG~Did~~mv~gak~Nl~~y~i--~~~~~~~~~Da~~lpl~~~~vdaI 268 (347)
T COG1041 195 VKRGELVLDPFCGTGGI--LIEA--GLMGARVIGSDIDERMVRGAKINLEYYGI--EDYPVLKVLDATNLPLRDNSVDAI 268 (347)
T ss_pred cccCCEeecCcCCccHH--HHhh--hhcCceEeecchHHHHHhhhhhhhhhhCc--CceeEEEecccccCCCCCCccceE
Confidence 57888999999998754 2223 36899999999999999999999999994 45666666 999988544459999
Q ss_pred EecccccCC--------hHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 207 FLAALVGMS--------KEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 207 ~~aa~v~~~--------~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
..+..-|-. .+-..++++...++|++||++++-..
T Consensus 269 atDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 269 ATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred EecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 887633221 24478999999999999999998875
No 194
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.35 E-value=4.2e-06 Score=77.56 Aligned_cols=111 Identities=14% Similarity=0.121 Sum_probs=87.9
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-cCC-Ccc
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-KLG-EYD 204 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-~~~-~fD 204 (284)
.+.++.+|||..+||+|=|+. +|..+...+.|++.|+++..+..-+++++++|. ..+...+.|.+.... ... .||
T Consensus 82 ~~~~~~~VLD~CAapGgKt~~-la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~--~~v~~~~~D~~~~~~~~~~~~fd 158 (283)
T PF01189_consen 82 DPQPGERVLDMCAAPGGKTTH-LAELMGNKGEIVANDISPKRLKRLKENLKRLGV--FNVIVINADARKLDPKKPESKFD 158 (283)
T ss_dssp TTTTTSEEEESSCTTSHHHHH-HHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT---SSEEEEESHHHHHHHHHHTTTEE
T ss_pred cccccccccccccCCCCceee-eeecccchhHHHHhccCHHHHHHHHHHHHhcCC--ceEEEEeeccccccccccccccc
Confidence 568889999999999988864 555455578999999999999999999999995 678888899887632 223 599
Q ss_pred EEEecccc------cCChHH---------------HHHHHHHHHhhc----CCCcEEEEEe
Q 036061 205 CIFLAALV------GMSKEE---------------KVKIIKHIRKYM----KDGGVLLVRS 240 (284)
Q Consensus 205 ~V~~aa~v------~~~~~~---------------k~~il~~l~~~l----~pGg~lv~r~ 240 (284)
.|++++-- .-+++- ..++|++.++.+ +|||++++.+
T Consensus 159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp EEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred hhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 99988721 112222 278999999999 9999999977
No 195
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.34 E-value=1.1e-06 Score=79.18 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=72.7
Q ss_pred CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEeccc
Q 036061 132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAAL 211 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~ 211 (284)
+.++|||||++ .+++.+|. ++ -+|+++|+|++|++.|++.....- .....++...+..++.......|+|..+-.
T Consensus 35 ~~a~DvG~G~G-qa~~~iae-~~--k~VIatD~s~~mL~~a~k~~~~~y-~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 35 RLAWDVGTGNG-QAARGIAE-HY--KEVIATDVSEAMLKVAKKHPPVTY-CHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred ceEEEeccCCC-cchHHHHH-hh--hhheeecCCHHHHHHhhcCCCccc-ccCCccccccccccccCCCcceeeehhhhh
Confidence 38999999984 99999998 33 579999999999999988432211 122334444444444433457999987766
Q ss_pred ccCChHHHHHHHHHHHhhcCCCc-EEEEEec
Q 036061 212 VGMSKEEKVKIIKHIRKYMKDGG-VLLVRSA 241 (284)
Q Consensus 212 v~~~~~~k~~il~~l~~~l~pGg-~lv~r~~ 241 (284)
++| =+-.++++.+.|.||+.| ++++-.+
T Consensus 110 ~HW--Fdle~fy~~~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 110 VHW--FDLERFYKEAYRVLRKDGGLIAVWNY 138 (261)
T ss_pred HHh--hchHHHHHHHHHHcCCCCCEEEEEEc
Confidence 666 345678999999999887 7666543
No 196
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.34 E-value=4.1e-06 Score=78.26 Aligned_cols=110 Identities=18% Similarity=0.156 Sum_probs=76.9
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCC----CeEEEEecccccc------c
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEK----RMKFVTCDIMQVK------E 198 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~----~I~f~~~D~~~~~------~ 198 (284)
++++.++++|||-+|. .+-+-+ ..-..++|+||.+..++.|++..+..-...+ .+.|++||-.... +
T Consensus 116 ~~~~~~~~LgCGKGGD-LlKw~k--AgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~ 192 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGD-LLKWDK--AGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF 192 (389)
T ss_pred ccccccceeccCCccc-HhHhhh--hcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence 7889999999998665 444434 1335799999999999999998875432222 4789999976421 1
Q ss_pred cCCCccEEE---ecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 199 KLGEYDCIF---LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 199 ~~~~fD~V~---~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
+..+||+|= ...+...+.+.-...+.++.+.|+|||+++-..+
T Consensus 193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 222499983 2233222444555678999999999999998553
No 197
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.32 E-value=2.2e-06 Score=77.17 Aligned_cols=90 Identities=17% Similarity=0.205 Sum_probs=58.7
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCe-EEEEeccc-----cccccCCC
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRM-KFVTCDIM-----QVKEKLGE 202 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I-~f~~~D~~-----~~~~~~~~ 202 (284)
.++++|||+||||+++| .++++ ....+|+++|+++.++....+ .. .++ .+...|+. +...++..
T Consensus 74 ~~~~~vlDiG~gtG~~t-~~l~~--~ga~~v~avD~~~~~l~~~l~---~~----~~v~~~~~~ni~~~~~~~~~~d~~~ 143 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFT-DCALQ--KGAKEVYGVDVGYNQLAEKLR---QD----ERVKVLERTNIRYVTPADIFPDFAT 143 (228)
T ss_pred CCCCEEEEcccCCCHHH-HHHHH--cCCCEEEEEeCCHHHHHHHHh---cC----CCeeEeecCCcccCCHhHcCCCcee
Confidence 47789999999998776 45666 234589999999988776222 11 122 23333333 23334456
Q ss_pred ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061 203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLV 238 (284)
Q Consensus 203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~ 238 (284)
||++|.+.. .++..+.+.|+| |.+++
T Consensus 144 ~DvsfiS~~---------~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 144 FDVSFISLI---------SILPELDLLLNP-NDLTL 169 (228)
T ss_pred eeEEEeehH---------hHHHHHHHHhCc-CeEEE
Confidence 888886532 268899999999 66554
No 198
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=1.3e-05 Score=69.58 Aligned_cols=107 Identities=17% Similarity=0.249 Sum_probs=82.6
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
..+.-+++||||. |.-+-.|++...+++...+.||+|.|.+..++-++..+. ++..+++|..+.... ++.|++++
T Consensus 42 ~~~~i~lEIG~GS-GvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~---~~~~V~tdl~~~l~~-~~VDvLvf 116 (209)
T KOG3191|consen 42 HNPEICLEIGCGS-GVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV---HIDVVRTDLLSGLRN-ESVDVLVF 116 (209)
T ss_pred cCceeEEEecCCc-chHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC---ccceeehhHHhhhcc-CCccEEEE
Confidence 3488999999997 566666777677889999999999999999999998884 688999998876655 68998877
Q ss_pred cc-cccCChHH-------------------HHHHHHHHHhhcCCCcEEEEEe
Q 036061 209 AA-LVGMSKEE-------------------KVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 209 aa-~v~~~~~~-------------------k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+. +|.-+.++ -.+++.++-..|.|.|++.+-.
T Consensus 117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~ 168 (209)
T KOG3191|consen 117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVA 168 (209)
T ss_pred CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeee
Confidence 65 45222222 1456777778888999877654
No 199
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.28 E-value=5.1e-06 Score=73.62 Aligned_cols=111 Identities=20% Similarity=0.244 Sum_probs=77.8
Q ss_pred EEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEeccccc
Q 036061 134 VAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVG 213 (284)
Q Consensus 134 VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~v~ 213 (284)
|+||||-. |+-++.|.+ ...-.++++.|+++.-++.|++.+++.| +.++|+++.||+.+...+-...|.|+++.+
T Consensus 1 vaDIGtDH-gyLpi~L~~-~~~~~~~ia~DI~~gpL~~A~~~i~~~~-l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM-- 75 (205)
T PF04816_consen 1 VADIGTDH-GYLPIYLLK-NGKAPKAIAVDINPGPLEKAKENIAKYG-LEDRIEVRLGDGLEVLKPGEDVDTIVIAGM-- 75 (205)
T ss_dssp EEEET-ST-THHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHHTT--TTTEEEEE-SGGGG--GGG---EEEEEEE--
T ss_pred Cceeccch-hHHHHHHHh-cCCCCEEEEEeCCHHHHHHHHHHHHHcC-CcccEEEEECCcccccCCCCCCCEEEEecC--
Confidence 68999998 677788887 2444579999999999999999999999 899999999999876554334899987743
Q ss_pred CChHHHHHHHHHHHhhcCCCcEEEEEec---CccccccCc
Q 036061 214 MSKEEKVKIIKHIRKYMKDGGVLLVRSA---KGARAFLYP 250 (284)
Q Consensus 214 ~~~~~k~~il~~l~~~l~pGg~lv~r~~---~glr~~lYp 250 (284)
--.--.++++.....++....|++--- .-+|.+|+-
T Consensus 76 -GG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~ 114 (205)
T PF04816_consen 76 -GGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYE 114 (205)
T ss_dssp --HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHH
T ss_pred -CHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHH
Confidence 235567888888888777667777542 335666543
No 200
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.27 E-value=6.1e-06 Score=79.40 Aligned_cols=101 Identities=16% Similarity=0.137 Sum_probs=80.2
Q ss_pred CCEEEEeccCCChhHHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CCccEEEe
Q 036061 131 PKKVAFVGSGPMPLTSIVMAKNHLKS-THFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GEYDCIFL 208 (284)
Q Consensus 131 ~~~VL~IGsG~lp~tai~LA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~fD~V~~ 208 (284)
+-+|||..||++.. ++.++++ .+| .+|+++|+|++|++.++++++..+. .++++.++|+..+.... ..||+|++
T Consensus 45 ~~~vLD~faGsG~r-gir~a~e-~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~--~~~~v~~~Da~~~l~~~~~~fDvIdl 120 (374)
T TIGR00308 45 YINIADALSASGIR-AIRYAHE-IEGVREVFANDINPKAVESIKNNVEYNSV--ENIEVPNEDAANVLRYRNRKFHVIDI 120 (374)
T ss_pred CCEEEECCCchhHH-HHHHHhh-CCCCCEEEEEeCCHHHHHHHHHHHHHhCC--CcEEEEchhHHHHHHHhCCCCCEEEe
Confidence 35899999997555 5556652 234 5899999999999999999998883 47899999998776543 36999999
Q ss_pred cccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+.+ |. ...+++.+.+.+++||.|.+..
T Consensus 121 DPf-Gs----~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 121 DPF-GT----PAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred CCC-CC----cHHHHHHHHHhcccCCEEEEEe
Confidence 985 32 2468899999999999998874
No 201
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.25 E-value=8.9e-06 Score=69.66 Aligned_cols=111 Identities=11% Similarity=0.166 Sum_probs=87.7
Q ss_pred HHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC--
Q 036061 123 LDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-- 200 (284)
Q Consensus 123 l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-- 200 (284)
........+.-||++|-|++.+|-..|++ ..+...++.|+.|++-+..-.+ .. ..++++.||+.++...+
T Consensus 41 ~s~I~pesglpVlElGPGTGV~TkaIL~~-gv~~~~L~~iE~~~dF~~~L~~---~~----p~~~ii~gda~~l~~~l~e 112 (194)
T COG3963 41 ASVIDPESGLPVLELGPGTGVITKAILSR-GVRPESLTAIEYSPDFVCHLNQ---LY----PGVNIINGDAFDLRTTLGE 112 (194)
T ss_pred HhccCcccCCeeEEEcCCccHhHHHHHhc-CCCccceEEEEeCHHHHHHHHH---hC----CCccccccchhhHHHHHhh
Confidence 34456688899999999999999988887 5677899999999998776665 33 35679999998765322
Q ss_pred ---CCccEEEeccc-ccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 201 ---GEYDCIFLAAL-VGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 201 ---~~fD~V~~aa~-v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
..||.|+.+-- ...+...+.++++.+..++.+||.++.=++
T Consensus 113 ~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftY 157 (194)
T COG3963 113 HKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTY 157 (194)
T ss_pred cCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 24999996643 355678889999999999999999887653
No 202
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.25 E-value=1.7e-05 Score=73.21 Aligned_cols=108 Identities=12% Similarity=0.221 Sum_probs=71.9
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhcCC-CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLK-STHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI 206 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~-g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V 206 (284)
.-.|++|||+|||| | |+++-+....+ -.+++++|.|+.|++.|+.+++.... ....... .+...-..+....|+|
T Consensus 31 ~f~P~~vLD~GsGp-G-ta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~-~~~~~~~-~~~~~~~~~~~~~DLv 106 (274)
T PF09243_consen 31 DFRPRSVLDFGSGP-G-TALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN-NRNAEWR-RVLYRDFLPFPPDDLV 106 (274)
T ss_pred CCCCceEEEecCCh-H-HHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc-cccchhh-hhhhcccccCCCCcEE
Confidence 35789999999997 3 56665553333 35699999999999999999987652 2222121 1111111223345999
Q ss_pred Eecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 207 FLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 207 ~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+.+..+ .++.+.+.++++.+++.+++ -.+++..
T Consensus 107 i~s~~L~EL~~~~r~~lv~~LW~~~~~-~LVlVEp 140 (274)
T PF09243_consen 107 IASYVLNELPSAARAELVRSLWNKTAP-VLVLVEP 140 (274)
T ss_pred EEehhhhcCCchHHHHHHHHHHHhccC-cEEEEcC
Confidence 877644 55558899999999999877 4555544
No 203
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=98.24 E-value=6e-06 Score=74.90 Aligned_cols=153 Identities=12% Similarity=0.067 Sum_probs=95.8
Q ss_pred CchhHHHHHHHHHHhccCCcccccccCchhHHHHHHHHHHHHHHhhHhhh--HHHHHHhcCCCCcccccccCCCcchhhh
Q 036061 37 PSKQVNSLFTHLVKLCTPPSSIDIKTLPQEVQEMRESLIVLCGRAEGLLE--LEFATFFAKTPQPLNNLNLFPYYGNYVK 114 (284)
Q Consensus 37 p~~~vn~lf~~Lv~lc~~~~~~~~~~~~~~~~~l~~~l~~l~~~~e~~lE--~~~a~~l~~~~~p~~~L~~fpy~~ny~~ 114 (284)
+.+.++....+|-..|---.+ -.+..+.+..++++ +.+.+--| +.|.+.+.+...+.. .+++++..
T Consensus 27 ~k~a~k~~k~~LH~i~gay~~-----~~p~~~~ll~~l~~--a~~~~D~e~~~~~~r~lL~~HaST~-----ERl~~Ld~ 94 (251)
T PF07091_consen 27 LKEAVKATKRRLHQIFGAYLE-----GRPDYDALLRKLQE--ALDVGDPEAIRAWCRRLLAGHASTR-----ERLPNLDE 94 (251)
T ss_dssp HHHHHHHHHHHHHCCTCCCSS-----S---HHHHHHHHHH--HHCTTHHHHHHHHHHHHHHTSHHHH-----CCGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----CCCCHHHHHHHHHh--ccCcCCHHHHHHHHHHHHhhccchh-----hhhhhHHH
Confidence 345588888888888765321 12345555566666 22222222 233344554433322 45566666
Q ss_pred hhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccc
Q 036061 115 LANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIM 194 (284)
Q Consensus 115 l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~ 194 (284)
+...+++ ...++.+|+|||||.-|++..++.. .+++.++|+|||..+++.-.+.+..+|. +.++...|..
T Consensus 95 fY~~if~-----~~~~p~sVlDigCGlNPlalp~~~~--~~~a~Y~a~DID~~~ve~l~~~l~~l~~---~~~~~v~Dl~ 164 (251)
T PF07091_consen 95 FYDEIFG-----RIPPPDSVLDIGCGLNPLALPWMPE--APGATYIAYDIDSQLVEFLNAFLAVLGV---PHDARVRDLL 164 (251)
T ss_dssp HHHHHCC-----CS---SEEEEET-TTCHHHHHTTTS--STT-EEEEEESBHHHHHHHHHHHHHTT----CEEEEEE-TT
T ss_pred HHHHHHh-----cCCCCchhhhhhccCCceehhhccc--CCCcEEEEEeCCHHHHHHHHHHHHhhCC---CcceeEeeee
Confidence 6666543 2366999999999999999988865 6789999999999999999999999985 6788888886
Q ss_pred cccccCCCccEEEecccc
Q 036061 195 QVKEKLGEYDCIFLAALV 212 (284)
Q Consensus 195 ~~~~~~~~fD~V~~aa~v 212 (284)
.-+. -...|+.++-=++
T Consensus 165 ~~~~-~~~~DlaLllK~l 181 (251)
T PF07091_consen 165 SDPP-KEPADLALLLKTL 181 (251)
T ss_dssp TSHT-TSEESEEEEET-H
T ss_pred ccCC-CCCcchhhHHHHH
Confidence 4322 2358988765544
No 204
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.23 E-value=1.1e-05 Score=76.54 Aligned_cols=111 Identities=23% Similarity=0.265 Sum_probs=88.3
Q ss_pred HHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc
Q 036061 119 EYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK 197 (284)
Q Consensus 119 E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~ 197 (284)
|..-+.+. ...|.+|+|.=+|-+|+ |+.+|+ .|.. |+++|++|+|++..+++++..+ ++++|+.++||+.++.
T Consensus 178 ER~Rva~~-v~~GE~V~DmFAGVGpf-si~~Ak---~g~~~V~A~diNP~A~~~L~eNi~LN~-v~~~v~~i~gD~rev~ 251 (341)
T COG2520 178 ERARVAEL-VKEGETVLDMFAGVGPF-SIPIAK---KGRPKVYAIDINPDAVEYLKENIRLNK-VEGRVEPILGDAREVA 251 (341)
T ss_pred HHHHHHhh-hcCCCEEEEccCCcccc-hhhhhh---cCCceEEEEecCHHHHHHHHHHHHhcC-ccceeeEEeccHHHhh
Confidence 54444332 35699999998885555 467787 4444 9999999999999999999999 7888999999999998
Q ss_pred ccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 198 EKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 198 ~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
...+.||.|++... ..-.+++....+.+++||++-+..
T Consensus 252 ~~~~~aDrIim~~p-----~~a~~fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 252 PELGVADRIIMGLP-----KSAHEFLPLALELLKDGGIIHYYE 289 (341)
T ss_pred hccccCCEEEeCCC-----CcchhhHHHHHHHhhcCcEEEEEe
Confidence 87788999997644 233467888888999999987755
No 205
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=2e-05 Score=77.11 Aligned_cols=99 Identities=14% Similarity=0.233 Sum_probs=79.2
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCC---Cc
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLG---EY 203 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~---~f 203 (284)
...++.+|+|+=||- |.-++.||+ ...+|+|+|+++++++.|+++++..| +. +++|+.+|+.++...+. .|
T Consensus 290 ~~~~~~~vlDlYCGv-G~f~l~lA~---~~~~V~gvEi~~~aV~~A~~NA~~n~-i~-N~~f~~~~ae~~~~~~~~~~~~ 363 (432)
T COG2265 290 ELAGGERVLDLYCGV-GTFGLPLAK---RVKKVHGVEISPEAVEAAQENAAANG-ID-NVEFIAGDAEEFTPAWWEGYKP 363 (432)
T ss_pred hhcCCCEEEEeccCC-Chhhhhhcc---cCCEEEEEecCHHHHHHHHHHHHHcC-CC-cEEEEeCCHHHHhhhccccCCC
Confidence 446778999999994 666788987 78999999999999999999999999 44 49999999999887663 68
Q ss_pred cEEEecccc-cCChHHHHHHHHHHHhhcCCCcEE
Q 036061 204 DCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVL 236 (284)
Q Consensus 204 D~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~l 236 (284)
|.|+++.-= |++ .++++.+.+. +|-.++
T Consensus 364 d~VvvDPPR~G~~----~~~lk~l~~~-~p~~Iv 392 (432)
T COG2265 364 DVVVVDPPRAGAD----REVLKQLAKL-KPKRIV 392 (432)
T ss_pred CEEEECCCCCCCC----HHHHHHHHhc-CCCcEE
Confidence 999999642 443 3466777765 555443
No 206
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.21 E-value=6.5e-06 Score=78.81 Aligned_cols=120 Identities=17% Similarity=0.166 Sum_probs=85.8
Q ss_pred HHHHhcCCCCCCEEEEe--ccCCChhHHHHHHhhcCCC----------------------------c-------EEEEEe
Q 036061 121 RILDENGVVNPKKVAFV--GSGPMPLTSIVMAKNHLKS----------------------------T-------HFDNFD 163 (284)
Q Consensus 121 ~~l~~~~~~~~~~VL~I--GsG~lp~tai~LA~~~~~g----------------------------~-------~V~~iD 163 (284)
.++...+-.++..++|- ||||++.-|.+++...-|| + .+.|.|
T Consensus 182 Ail~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~D 261 (381)
T COG0116 182 AILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSD 261 (381)
T ss_pred HHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEec
Confidence 33444455666778775 5557777677776422221 1 377999
Q ss_pred CChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecccccCCh------H-HHHHHHHHHHhhcCCCcEE
Q 036061 164 IDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSK------E-EKVKIIKHIRKYMKDGGVL 236 (284)
Q Consensus 164 id~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~v~~~~------~-~k~~il~~l~~~l~pGg~l 236 (284)
+|+.+++.|+.|+++.| +++.|+|.++|+.++..+...+|+|+.+.--|.-. + -+..+.+.+.+.++--++.
T Consensus 262 id~r~i~~Ak~NA~~AG-v~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~ 340 (381)
T COG0116 262 IDPRHIEGAKANARAAG-VGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRY 340 (381)
T ss_pred CCHHHHHHHHHHHHhcC-CCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceE
Confidence 99999999999999999 79999999999999888767899999886432211 1 3345555666777777788
Q ss_pred EEEec
Q 036061 237 LVRSA 241 (284)
Q Consensus 237 v~r~~ 241 (284)
++-+.
T Consensus 341 v~tt~ 345 (381)
T COG0116 341 VFTTS 345 (381)
T ss_pred EEEcc
Confidence 87663
No 207
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=1.7e-05 Score=72.56 Aligned_cols=104 Identities=19% Similarity=0.203 Sum_probs=86.0
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC--CCcc
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL--GEYD 204 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~--~~fD 204 (284)
...++.+|++-|+|.+++| ..+|+...|.+++..+|..+...+.|++-++..| +.+.+++.+-|+-..-+.. ..+|
T Consensus 102 ~i~PGsvV~EsGTGSGSlS-haiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg-i~~~vt~~hrDVc~~GF~~ks~~aD 179 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLS-HAIARAVAPTGHLYTFEFHETRAEKALEEFREHG-IGDNVTVTHRDVCGSGFLIKSLKAD 179 (314)
T ss_pred cCCCCCEEEecCCCcchHH-HHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC-CCcceEEEEeecccCCccccccccc
Confidence 4689999999999987775 5678867889999999999999999999999999 7999999999987655444 3599
Q ss_pred EEEecccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061 205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLV 238 (284)
Q Consensus 205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~ 238 (284)
.||++-. .....+.+.++.+|.+|.-++
T Consensus 180 aVFLDlP------aPw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 180 AVFLDLP------APWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred eEEEcCC------ChhhhhhhhHHHhhhcCceEE
Confidence 9998743 345677888889998885444
No 208
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.18 E-value=2.3e-05 Score=81.22 Aligned_cols=84 Identities=17% Similarity=0.199 Sum_probs=61.4
Q ss_pred cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC--CCccEEEecccccC---ChHHHHHHHHHHHhhc-
Q 036061 157 THFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL--GEYDCIFLAALVGM---SKEEKVKIIKHIRKYM- 230 (284)
Q Consensus 157 ~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~--~~fD~V~~aa~v~~---~~~~k~~il~~l~~~l- 230 (284)
.+++|+|+|++|++.|++++...| +.++|+|.++|+.++.... +.||+|+.+.--|. ..++-.++...+.+.+
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~~g-~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 257 SKFYGSDIDPRVIQAARKNARRAG-VAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred ceEEEEECCHHHHHHHHHHHHHcC-CCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 379999999999999999999999 7889999999998875543 36999998863222 1223233444444444
Q ss_pred --CCCcEEEEEec
Q 036061 231 --KDGGVLLVRSA 241 (284)
Q Consensus 231 --~pGg~lv~r~~ 241 (284)
.+|+.+.+-++
T Consensus 336 ~~~~g~~~~llt~ 348 (702)
T PRK11783 336 QQFGGWNAALFSS 348 (702)
T ss_pred HhCCCCeEEEEeC
Confidence 48988777664
No 209
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.18 E-value=1.2e-05 Score=80.29 Aligned_cols=109 Identities=17% Similarity=0.126 Sum_probs=86.8
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC--CCccEE
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL--GEYDCI 206 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~--~~fD~V 206 (284)
....-+||||||- |-..+.+|+ ..|+..+.|||+....+..|.+.+.+.|. .++.++++|+..+...+ +++|-|
T Consensus 346 ~~~p~~lEIG~G~-G~~~~~~A~-~~p~~~~iGiE~~~~~~~~~~~~~~~~~l--~N~~~~~~~~~~~~~~~~~~sv~~i 421 (506)
T PRK01544 346 EKRKVFLEIGFGM-GEHFINQAK-MNPDALFIGVEVYLNGVANVLKLAGEQNI--TNFLLFPNNLDLILNDLPNNSLDGI 421 (506)
T ss_pred CCCceEEEECCCc-hHHHHHHHH-hCCCCCEEEEEeeHHHHHHHHHHHHHcCC--CeEEEEcCCHHHHHHhcCcccccEE
Confidence 4567999999996 556677887 68999999999999999999999988884 68999999875443322 469999
Q ss_pred EecccccCChHH--H-----HHHHHHHHhhcCCCcEEEEEec
Q 036061 207 FLAALVGMSKEE--K-----VKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 207 ~~aa~v~~~~~~--k-----~~il~~l~~~l~pGg~lv~r~~ 241 (284)
++..--.|++.- | ..+++.+++.|+|||.+-+++-
T Consensus 422 ~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 422 YILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred EEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 877554564422 2 6788999999999999999884
No 210
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.18 E-value=2e-05 Score=73.78 Aligned_cols=82 Identities=15% Similarity=0.075 Sum_probs=64.3
Q ss_pred cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc-----C
Q 036061 126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK-----L 200 (284)
Q Consensus 126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~-----~ 200 (284)
+.+.++..++|-=+|.+|-|..++.+ .++++|+|+|+|++|++.|++.++..+ .++++++++..++... +
T Consensus 16 L~~~~ggiyVD~TlG~GGHS~~iL~~--l~~g~vigiD~D~~Al~~ak~~L~~~~---~R~~~i~~nF~~l~~~l~~~~~ 90 (305)
T TIGR00006 16 LNIKPDGIYIDCTLGFGGHSKAILEQ--LGTGRLIGIDRDPQAIAFAKERLSDFE---GRVVLIHDNFANFFEHLDELLV 90 (305)
T ss_pred cCcCCCCEEEEeCCCChHHHHHHHHh--CCCCEEEEEcCCHHHHHHHHHHHhhcC---CcEEEEeCCHHHHHHHHHhcCC
Confidence 34577789999999987877766644 446999999999999999999887654 5999999998876432 2
Q ss_pred CCccEEEecccc
Q 036061 201 GEYDCIFLAALV 212 (284)
Q Consensus 201 ~~fD~V~~aa~v 212 (284)
..+|.|+++-.|
T Consensus 91 ~~vDgIl~DLGv 102 (305)
T TIGR00006 91 TKIDGILVDLGV 102 (305)
T ss_pred CcccEEEEeccC
Confidence 458999877655
No 211
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.16 E-value=1e-05 Score=76.30 Aligned_cols=103 Identities=20% Similarity=0.287 Sum_probs=76.4
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
-+++.|||||||+ |.=++.-|+ + ...+|.++|-|.-+ +.|++++...| +++.|+++.|.+.++.-+....|+++.
T Consensus 59 f~dK~VlDVGcGt-GILS~F~ak-A-GA~~V~aVe~S~ia-~~a~~iv~~N~-~~~ii~vi~gkvEdi~LP~eKVDiIvS 133 (346)
T KOG1499|consen 59 FKDKTVLDVGCGT-GILSMFAAK-A-GARKVYAVEASSIA-DFARKIVKDNG-LEDVITVIKGKVEDIELPVEKVDIIVS 133 (346)
T ss_pred cCCCEEEEcCCCc-cHHHHHHHH-h-CcceEEEEechHHH-HHHHHHHHhcC-ccceEEEeecceEEEecCccceeEEee
Confidence 5789999999997 666777777 2 34679999999666 99999999999 899999999999987555568999863
Q ss_pred cc---cccCChHHHHHHHHHHHhhcCCCcEEE
Q 036061 209 AA---LVGMSKEEKVKIIKHIRKYMKDGGVLL 237 (284)
Q Consensus 209 aa---~v~~~~~~k~~il~~l~~~l~pGg~lv 237 (284)
.= .+. ....-..++-.=-+.|+|||.+.
T Consensus 134 EWMGy~Ll-~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 134 EWMGYFLL-YESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhhhHHHH-HhhhhhhhhhhhhhccCCCceEc
Confidence 31 110 01122334444457899999864
No 212
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.14 E-value=1.2e-05 Score=71.32 Aligned_cols=112 Identities=14% Similarity=0.165 Sum_probs=66.7
Q ss_pred HHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHH-------hcCCCCCCeEEEEecc
Q 036061 122 ILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVS-------SDIEFEKRMKFVTCDI 193 (284)
Q Consensus 122 ~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~-------~~G~l~~~I~f~~~D~ 193 (284)
.+...++.+....+|||||- |-..+..|- ..+++ +.||++.+...+.|++..+ ..|.-..++++..||.
T Consensus 34 il~~~~l~~~dvF~DlGSG~-G~~v~~aal--~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 34 ILDELNLTPDDVFYDLGSGV-GNVVFQAAL--QTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHTT--TT-EEEEES-TT-SHHHHHHHH--HH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHhCCCCCCEEEECCCCC-CHHHHHHHH--HcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 34455678899999999994 555444443 46776 9999999999999986553 3443246889999998
Q ss_pred ccccc---cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061 194 MQVKE---KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLV 238 (284)
Q Consensus 194 ~~~~~---~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~ 238 (284)
.+... .+.+-|+||++..+ .+.+-. .-+......||+|.++|.
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~-F~~~l~-~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTC-FDPDLN-LALAELLLELKPGARIIS 156 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TT-T-HHHH-HHHHHHHTTS-TT-EEEE
T ss_pred cccHhHhhhhcCCCEEEEeccc-cCHHHH-HHHHHHHhcCCCCCEEEE
Confidence 75331 23567999998775 333444 445777788999999875
No 213
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.14 E-value=9.7e-06 Score=77.35 Aligned_cols=81 Identities=21% Similarity=0.230 Sum_probs=56.1
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc---------
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK--------- 199 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~--------- 199 (284)
..+.+|+|+=||. |.-++.||+ ...+|+|||++++|++.|+++++..|. ++++|+++++.++...
T Consensus 195 ~~~~~vlDlycG~-G~fsl~la~---~~~~V~gvE~~~~av~~A~~Na~~N~i--~n~~f~~~~~~~~~~~~~~~r~~~~ 268 (352)
T PF05958_consen 195 LSKGDVLDLYCGV-GTFSLPLAK---KAKKVIGVEIVEEAVEDARENAKLNGI--DNVEFIRGDAEDFAKALAKAREFNR 268 (352)
T ss_dssp T-TTEEEEES-TT-TCCHHHHHC---CSSEEEEEES-HHHHHHHHHHHHHTT----SEEEEE--SHHCCCHHCCS-GGTT
T ss_pred cCCCcEEEEeecC-CHHHHHHHh---hCCeEEEeeCCHHHHHHHHHHHHHcCC--CcceEEEeeccchhHHHHhhHHHHh
Confidence 3344899999995 566788998 778999999999999999999999995 6899999988765321
Q ss_pred -----C--CCccEEEecccc-cCC
Q 036061 200 -----L--GEYDCIFLAALV-GMS 215 (284)
Q Consensus 200 -----~--~~fD~V~~aa~v-~~~ 215 (284)
+ ..+|+|+++.-= |++
T Consensus 269 ~~~~~~~~~~~d~vilDPPR~G~~ 292 (352)
T PF05958_consen 269 LKGIDLKSFKFDAVILDPPRAGLD 292 (352)
T ss_dssp GGGS-GGCTTESEEEE---TT-SC
T ss_pred hhhhhhhhcCCCEEEEcCCCCCch
Confidence 1 157999998643 544
No 214
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.13 E-value=2.5e-05 Score=71.46 Aligned_cols=150 Identities=19% Similarity=0.335 Sum_probs=87.6
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-------------------------
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE------------------------- 181 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~------------------------- 181 (284)
+..++.++|||||||.-+.++..++ .=-.|+..|..+...+.-++=++..|.
T Consensus 53 g~~~g~~llDiGsGPtiy~~lsa~~---~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~ 129 (256)
T PF01234_consen 53 GGVKGETLLDIGSGPTIYQLLSACE---WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEE 129 (256)
T ss_dssp SSS-EEEEEEES-TT--GGGTTGGG---TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHH
T ss_pred cCcCCCEEEEeCCCcHHHhhhhHHH---hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHH
Confidence 4467889999999997776655544 224699999998888755444433221
Q ss_pred -CCCCeE-EEEecccccccc-----CC-CccEEEeccc---ccCChHHHHHHHHHHHhhcCCCcEEEEEecC-------c
Q 036061 182 -FEKRMK-FVTCDIMQVKEK-----LG-EYDCIFLAAL---VGMSKEEKVKIIKHIRKYMKDGGVLLVRSAK-------G 243 (284)
Q Consensus 182 -l~~~I~-f~~~D~~~~~~~-----~~-~fD~V~~aa~---v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~-------g 243 (284)
+...|+ ++.+|++....- +. +||+|+.... +.-+.+++.+.++++.++|||||.|++-..- |
T Consensus 130 ~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG 209 (256)
T PF01234_consen 130 KLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVG 209 (256)
T ss_dssp HHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEET
T ss_pred HHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEEC
Confidence 012344 777888763321 22 3999975542 2447789999999999999999999997632 2
Q ss_pred cccccCccCC--Ccc----C--CCcEEEEEecCCc-ceeee--EEEEee
Q 036061 244 ARAFLYPVVE--KHD----L--LDFELLSVFHPTN-EVINS--VVLVRK 281 (284)
Q Consensus 244 lr~~lYp~v~--~~d----l--~gfe~~~~~hP~~-~v~ns--vi~~r~ 281 (284)
-+. ||.+. .+. + .||++....++.. .-+++ +++|||
T Consensus 210 ~~~--F~~l~l~ee~v~~al~~aG~~i~~~~~~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 210 GHK--FPCLPLNEEFVREALEEAGFDIEDLEKQSKVSDYEGMFFLVARK 256 (256)
T ss_dssp TEE--EE---B-HHHHHHHHHHTTEEEEEEEG-TTTB---EEEEEEEEE
T ss_pred CEe--cccccCCHHHHHHHHHHcCCEEEecccccCcCCCCcEEEEEEeC
Confidence 222 33333 222 2 6999988876222 12333 455666
No 215
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.13 E-value=1.9e-06 Score=76.57 Aligned_cols=106 Identities=22% Similarity=0.298 Sum_probs=79.1
Q ss_pred CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCC----CccE
Q 036061 130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLG----EYDC 205 (284)
Q Consensus 130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~----~fD~ 205 (284)
....|++.=||.+| .++..|. .++.|.+|||||.-+..|+.+++-.| ..+||+|++||..++-..+. .+|+
T Consensus 94 ~~~~iidaf~g~gG-ntiqfa~---~~~~VisIdiDPikIa~AkhNaeiYG-I~~rItFI~GD~ld~~~~lq~~K~~~~~ 168 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGG-NTIQFAL---QGPYVIAIDIDPVKIACARHNAEVYG-VPDRITFICGDFLDLASKLKADKIKYDC 168 (263)
T ss_pred CcchhhhhhhcCCc-hHHHHHH---hCCeEEEEeccHHHHHHHhccceeec-CCceeEEEechHHHHHHHHhhhhheeee
Confidence 56788888888544 5577776 78999999999999999999999999 68899999999988655441 2678
Q ss_pred EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
||.+..-|.+.--+..+ -.+..++.|.|.-++|..
T Consensus 169 vf~sppwggp~y~~~~~-~DL~~~~~p~~~~~fk~s 203 (263)
T KOG2730|consen 169 VFLSPPWGGPSYLRADV-YDLETHLKPMGTKIFKSS 203 (263)
T ss_pred eecCCCCCCcchhhhhh-hhhhhhcchhHHHHHHhh
Confidence 88776544333333333 467777777776666553
No 216
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.12 E-value=1.4e-05 Score=79.72 Aligned_cols=102 Identities=25% Similarity=0.261 Sum_probs=73.1
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccc-----------cc
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIM-----------QV 196 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~-----------~~ 196 (284)
..++.+|+.+|+|+.|+.++..|+ ..|+.|+++|++++..+.+++ +|. +|..-|.. +.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak--~lGA~V~a~D~~~~rle~aes----lGA-----~~v~i~~~e~~~~~~gya~~~ 230 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAG--SLGAIVRAFDTRPEVAEQVES----MGA-----EFLELDFEEEGGSGDGYAKVM 230 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHH----cCC-----eEEEeccccccccccchhhhc
Confidence 468999999999999999999998 578899999999999888887 352 22211110 11
Q ss_pred cc------------cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 197 KE------------KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 197 ~~------------~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
.. ..+++|+||.++.+...+.+ .-+.++..+.|||||+++.-..
T Consensus 231 s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP-~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 231 SEEFIKAEMALFAEQAKEVDIIITTALIPGKPAP-KLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred chhHHHHHHHHHHhccCCCCEEEECCCCCcccCc-chHHHHHHHhcCCCCEEEEEcc
Confidence 11 12469999988876211112 2345999999999999887664
No 217
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.12 E-value=0.00016 Score=68.31 Aligned_cols=166 Identities=14% Similarity=0.205 Sum_probs=110.9
Q ss_pred hhHHHHHHHHhcC------CCCCCEEEEeccCCChhHHHHHHhhc--CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCe
Q 036061 115 LANLEYRILDENG------VVNPKKVAFVGSGPMPLTSIVMAKNH--LKSTHFDNFDIDEAANDVARQIVSSDIEFEKRM 186 (284)
Q Consensus 115 l~~~E~~~l~~~~------~~~~~~VL~IGsG~lp~tai~LA~~~--~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I 186 (284)
+.+.|.++|.++. ..++..++++|||.+-=|.+.|.... ....+.+++|||.++++.|.+.+.... . ..+
T Consensus 55 ptr~E~~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~-~-p~l 132 (319)
T TIGR03439 55 LTNDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN-F-SHV 132 (319)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc-C-CCe
Confidence 5567777776653 35677999999998666777665421 235789999999999999999887222 1 245
Q ss_pred EE--EEeccccccc---c--C-CCccEEEe-cccc-cCChHHHHHHHHHHHh-hcCCCcEEEEEe---------------
Q 036061 187 KF--VTCDIMQVKE---K--L-GEYDCIFL-AALV-GMSKEEKVKIIKHIRK-YMKDGGVLLVRS--------------- 240 (284)
Q Consensus 187 ~f--~~~D~~~~~~---~--~-~~fD~V~~-aa~v-~~~~~~k~~il~~l~~-~l~pGg~lv~r~--------------- 240 (284)
++ ++||-.+... . . ....++++ -+.+ .+++++...+|+.+++ .|+||+.|++--
T Consensus 133 ~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d 212 (319)
T TIGR03439 133 RCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYND 212 (319)
T ss_pred EEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcC
Confidence 55 8888765322 1 1 23566654 3456 4578889999999999 999999998832
Q ss_pred cCcc-ccccCc-------cCCC--ccCCCcEEEEEecCCcceeeeEEEEeec
Q 036061 241 AKGA-RAFLYP-------VVEK--HDLLDFELLSVFHPTNEVINSVVLVRKP 282 (284)
Q Consensus 241 ~~gl-r~~lYp-------~v~~--~dl~gfe~~~~~hP~~~v~nsvi~~r~~ 282 (284)
..|. +.|+-- ...- -++..|+-...++|...-+..-+++++.
T Consensus 213 ~~gvTa~FnlN~L~~~Nr~Lg~~~Fd~~~f~h~a~~n~~~~rie~~l~s~~~ 264 (319)
T TIGR03439 213 PGGVTRRFVLNGLVHANEILGSEAFREEDWEFLGEWDEELGRHEAFYIPKKD 264 (319)
T ss_pred CcchhHHHHHHHHHHHHHHhCccccCHHHcEEEEEEcCCCCeEEEEEEeCCc
Confidence 1121 111100 0111 1345688899999988878887777653
No 218
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.07 E-value=3.9e-05 Score=72.27 Aligned_cols=111 Identities=22% Similarity=0.311 Sum_probs=80.5
Q ss_pred HHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC
Q 036061 121 RILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL 200 (284)
Q Consensus 121 ~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~ 200 (284)
..+..+..-.++-|+|||||. |+-+..-|+ -...+|.+++-| +|.+.|+++++... +.+||+++.|-+.++..+
T Consensus 168 Ail~N~sDF~~kiVlDVGaGS-GILS~FAaq--AGA~~vYAvEAS-~MAqyA~~Lv~~N~-~~~rItVI~GKiEdieLP- 241 (517)
T KOG1500|consen 168 AILENHSDFQDKIVLDVGAGS-GILSFFAAQ--AGAKKVYAVEAS-EMAQYARKLVASNN-LADRITVIPGKIEDIELP- 241 (517)
T ss_pred HHHhcccccCCcEEEEecCCc-cHHHHHHHH--hCcceEEEEehh-HHHHHHHHHHhcCC-ccceEEEccCccccccCc-
Confidence 333333446789999999996 676676666 234579999998 78899999999887 899999999999886543
Q ss_pred CCccEEEecccccCC-hHHHHHHHHHHHhhcCCCcEEE
Q 036061 201 GEYDCIFLAALVGMS-KEEKVKIIKHIRKYMKDGGVLL 237 (284)
Q Consensus 201 ~~fD~V~~aa~v~~~-~~~k~~il~~l~~~l~pGg~lv 237 (284)
.+.|+++....=-|- .+.-.+-.-+.++.|+|.|...
T Consensus 242 Ek~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 242 EKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred hhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 478999866531111 1333344456779999999754
No 219
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.03 E-value=2.2e-05 Score=69.93 Aligned_cols=106 Identities=18% Similarity=0.269 Sum_probs=75.9
Q ss_pred CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061 130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA 209 (284)
Q Consensus 130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a 209 (284)
...++||.|+|-+-.|--.|.+ .=-+|..+|..+.-++.|++.+...+ ..-.++.+.-+.++.+..+.||+||+.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~---~f~~VDlVEp~~~Fl~~a~~~l~~~~--~~v~~~~~~gLQ~f~P~~~~YDlIW~Q 129 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLP---VFDEVDLVEPVEKFLEQAKEYLGKDN--PRVGEFYCVGLQDFTPEEGKYDLIWIQ 129 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCC---C-SEEEEEES-HHHHHHHHHHTCCGG--CCEEEEEES-GGG----TT-EEEEEEE
T ss_pred CcceEEecccccchhHHHHHHH---hcCEeEEeccCHHHHHHHHHHhcccC--CCcceEEecCHhhccCCCCcEeEEEeh
Confidence 4579999999966666555554 23689999999999999998765522 234678888888887766789999976
Q ss_pred ccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 210 ALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 210 a~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
=.+ +++.++-.++|+.+...|+|||++++..
T Consensus 130 W~lghLTD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 130 WCLGHLTDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp S-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhhccCCHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 433 6788999999999999999999999976
No 220
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.99 E-value=0.00018 Score=55.25 Aligned_cols=102 Identities=17% Similarity=0.251 Sum_probs=69.1
Q ss_pred EEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc--ccccC-CCccEEEecc
Q 036061 134 VAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ--VKEKL-GEYDCIFLAA 210 (284)
Q Consensus 134 VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~--~~~~~-~~fD~V~~aa 210 (284)
++++|||++..+ .+++....+..++++|+++.+++.++......+ . ..+.+..+|... .+... ..||++....
T Consensus 52 ~ld~~~g~g~~~--~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLA--LLARLGGRGAYVVGVDLSPEMLALARARAEGAG-L-GLVDFVVADALGGVLPFEDSASFDLVISLL 127 (257)
T ss_pred eEEecCCcCHHH--HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcC-C-CceEEEEeccccCCCCCCCCCceeEEeeee
Confidence 999999975433 444411223589999999999999666554422 1 117888899775 33333 2699994333
Q ss_pred cccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 211 LVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 211 ~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
..... . ....+..+.+.++|||.+++...
T Consensus 128 ~~~~~-~-~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 128 VLHLL-P-PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred ehhcC-C-HHHHHHHHHHhcCCCcEEEEEec
Confidence 32221 1 67899999999999999988774
No 221
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.99 E-value=3e-05 Score=72.34 Aligned_cols=108 Identities=19% Similarity=0.181 Sum_probs=61.5
Q ss_pred CCcccccccC-CCcchhhhhhHHHHHHHHhcC--CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHH
Q 036061 97 PQPLNNLNLF-PYYGNYVKLANLEYRILDENG--VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVAR 173 (284)
Q Consensus 97 ~~p~~~L~~f-py~~ny~~l~~~E~~~l~~~~--~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar 173 (284)
+-|-.+|.+- |.--||+.-+..-+. ... ....-++||||+|+-.+=.++-++ ..|++++|.|||+.+++.|+
T Consensus 69 diP~~~LcP~iP~R~nYi~~i~DlL~---~~~~~~~~~v~glDIGTGAscIYpLLg~~--~~~W~fvaTdID~~sl~~A~ 143 (299)
T PF05971_consen 69 DIPEGRLCPPIPNRLNYIHWIADLLA---SSNPGIPEKVRGLDIGTGASCIYPLLGAK--LYGWSFVATDIDPKSLESAR 143 (299)
T ss_dssp ---TTS----HHHHHHHHHHHHHHHT-----TCGCS---EEEEES-TTTTHHHHHHHH--HH--EEEEEES-HHHHHHHH
T ss_pred cCCCCCcCCCCchhHHHHHHHHHHhh---ccccccccceEeecCCccHHHHHHHHhhh--hcCCeEEEecCCHHHHHHHH
Confidence 4555555432 555678776654222 211 123569999999986666666666 46999999999999999999
Q ss_pred HHHHhc-CCCCCCeEEEEeccc-cccc----cCCCccEEEecc
Q 036061 174 QIVSSD-IEFEKRMKFVTCDIM-QVKE----KLGEYDCIFLAA 210 (284)
Q Consensus 174 ~~~~~~-G~l~~~I~f~~~D~~-~~~~----~~~~fD~V~~aa 210 (284)
+++++. + |+++|+++...-. .+.. ....||+.+.+.
T Consensus 144 ~nv~~N~~-L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmCNP 185 (299)
T PF05971_consen 144 ENVERNPN-LESRIELRKQKNPDNIFDGIIQPNERFDFTMCNP 185 (299)
T ss_dssp HHHHHT-T--TTTEEEEE--ST-SSTTTSTT--S-EEEEEE--
T ss_pred HHHHhccc-cccceEEEEcCCccccchhhhcccceeeEEecCC
Confidence 999999 7 8999999866422 2211 113599988765
No 222
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.98 E-value=2.3e-05 Score=67.19 Aligned_cols=121 Identities=17% Similarity=0.271 Sum_probs=73.6
Q ss_pred CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc------c----
Q 036061 130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE------K---- 199 (284)
Q Consensus 130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~------~---- 199 (284)
.+.+|+|+||+|+|.|...+.+ ..+.++|+++|+.+. .. -..+.++++|.++... .
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~-~~~~~~v~avDl~~~-----------~~--~~~~~~i~~d~~~~~~~~~i~~~~~~~ 88 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQR-GGPAGRVVAVDLGPM-----------DP--LQNVSFIQGDITNPENIKDIRKLLPES 88 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTS-TTTEEEEEEEESSST-----------GS---TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred cccEEEEcCCcccceeeeeeec-ccccceEEEEecccc-----------cc--ccceeeeecccchhhHHHhhhhhcccc
Confidence 5699999999999999876644 225799999999987 12 2567787888765311 1
Q ss_pred CCCccEEEeccc--c-cC---C----hHHHHHHHHHHHhhcCCCcEEEEEecCccc--cccCccCCCccC-CCcEEEEEe
Q 036061 200 LGEYDCIFLAAL--V-GM---S----KEEKVKIIKHIRKYMKDGGVLLVRSAKGAR--AFLYPVVEKHDL-LDFELLSVF 266 (284)
Q Consensus 200 ~~~fD~V~~aa~--v-~~---~----~~~k~~il~~l~~~l~pGg~lv~r~~~glr--~~lYp~v~~~dl-~gfe~~~~~ 266 (284)
.+.||+|+.+.. + +. + ..--...+.-..+.|+|||.+++...++.. .+++ .+ ..|+.+.++
T Consensus 89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~------~l~~~F~~v~~~ 162 (181)
T PF01728_consen 89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIY------LLKRCFSKVKIV 162 (181)
T ss_dssp TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHH------HHHHHHHHEEEE
T ss_pred ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHH------HHHhCCeEEEEE
Confidence 147999997762 1 11 0 011244455556789999999987755311 1111 11 357777777
Q ss_pred cCCc
Q 036061 267 HPTN 270 (284)
Q Consensus 267 hP~~ 270 (284)
.|..
T Consensus 163 Kp~~ 166 (181)
T PF01728_consen 163 KPPS 166 (181)
T ss_dssp E-TT
T ss_pred ECcC
Confidence 6644
No 223
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.97 E-value=3.2e-05 Score=64.55 Aligned_cols=85 Identities=20% Similarity=0.316 Sum_probs=63.6
Q ss_pred EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCC--CccEEEecc-cc-cCC------hHHHHHHHHHHH
Q 036061 158 HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLG--EYDCIFLAA-LV-GMS------KEEKVKIIKHIR 227 (284)
Q Consensus 158 ~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~--~fD~V~~aa-~v-~~~------~~~k~~il~~l~ 227 (284)
+|.++||-++|++.+++.+++.| +.++++++.....++..... ..|+|+++- +. |.+ .+--...++...
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~-~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG-LEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT--GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcC-CCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 58999999999999999999999 78899999999988776544 599998764 23 322 133478899999
Q ss_pred hhcCCCcEEEEEecCc
Q 036061 228 KYMKDGGVLLVRSAKG 243 (284)
Q Consensus 228 ~~l~pGg~lv~r~~~g 243 (284)
+.|+|||++++..+.|
T Consensus 80 ~lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 80 ELLKPGGIITIVVYPG 95 (140)
T ss_dssp HHEEEEEEEEEEE--S
T ss_pred HhhccCCEEEEEEeCC
Confidence 9999999999887543
No 224
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.97 E-value=3.2e-05 Score=70.96 Aligned_cols=108 Identities=17% Similarity=0.278 Sum_probs=67.0
Q ss_pred CCCEEEEeccCCChh--HHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc---------
Q 036061 130 NPKKVAFVGSGPMPL--TSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--------- 198 (284)
Q Consensus 130 ~~~~VL~IGsG~lp~--tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--------- 198 (284)
.=.+.|||||| +|. ..--.|+...|+++|+-+|.||-.+..||.++..... .+..++.+|+.+...
T Consensus 68 GIrQFLDlGsG-lPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~--g~t~~v~aD~r~p~~iL~~p~~~~ 144 (267)
T PF04672_consen 68 GIRQFLDLGSG-LPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR--GRTAYVQADLRDPEAILAHPEVRG 144 (267)
T ss_dssp ---EEEEET---S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT--SEEEEEE--TT-HHHHHCSHHHHC
T ss_pred CcceEEEcccC-CCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC--ccEEEEeCCCCCHHHHhcCHHHHh
Confidence 34799999999 452 3445666668999999999999999999999876541 358999999987321
Q ss_pred --cCCCccEEEecccc-cC-ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 199 --KLGEYDCIFLAALV-GM-SKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 199 --~~~~fD~V~~aa~v-~~-~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
++.+-=.|++.+.+ .. +.++...++..+.+.|.||..|++..
T Consensus 145 ~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 145 LLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp C--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred cCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence 11211124444433 33 44677899999999999999999976
No 225
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=97.97 E-value=4.9e-05 Score=71.31 Aligned_cols=104 Identities=18% Similarity=0.194 Sum_probs=70.7
Q ss_pred HHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCC
Q 036061 123 LDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLG 201 (284)
Q Consensus 123 l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~ 201 (284)
+.+....++++|+.+|+|++|+.++.+|+ ..|+ +|+++|.+++..+.|++ +|. ..-+.....|..+.....+
T Consensus 162 l~~~~~~~g~~VlV~G~G~vG~~aiqlak--~~G~~~Vi~~~~~~~~~~~a~~----lGa-~~vi~~~~~~~~~~~~~~g 234 (343)
T PRK09880 162 AHQAGDLQGKRVFVSGVGPIGCLIVAAVK--TLGAAEIVCADVSPRSLSLARE----MGA-DKLVNPQNDDLDHYKAEKG 234 (343)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHH--HcCCcEEEEEeCCHHHHHHHHH----cCC-cEEecCCcccHHHHhccCC
Confidence 34445567899999999999999999999 4677 69999999999887765 452 1111111122222222223
Q ss_pred CccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 202 EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 202 ~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.+|+||-+..- ...++...+.|++||++++-.
T Consensus 235 ~~D~vid~~G~-------~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 235 YFDVSFEVSGH-------PSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred CCCEEEECCCC-------HHHHHHHHHHhhcCCEEEEEc
Confidence 59999865431 135677888999999998764
No 226
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.96 E-value=8.3e-05 Score=70.75 Aligned_cols=110 Identities=15% Similarity=0.219 Sum_probs=83.6
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCC-CcEEEEEeCChHHHHHHH--HHHHhcC---CCCCCeEEEEeccccccccCC-
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLK-STHFDNFDIDEAANDVAR--QIVSSDI---EFEKRMKFVTCDIMQVKEKLG- 201 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~-g~~V~~iDid~~ai~~Ar--~~~~~~G---~l~~~I~f~~~D~~~~~~~~~- 201 (284)
+...+||.+|.|- |+.+.-+-| +| -.+||-+|.||++++.|+ ...++.. ....|++++..|+.++...-+
T Consensus 288 ~~a~~vLvlGGGD-GLAlRellk--yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~ 364 (508)
T COG4262 288 RGARSVLVLGGGD-GLALRELLK--YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAAD 364 (508)
T ss_pred cccceEEEEcCCc-hHHHHHHHh--CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcc
Confidence 4568999999995 888888877 67 578999999999999999 4444432 124699999999998876544
Q ss_pred CccEEEecccccCC----hHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 202 EYDCIFLAALVGMS----KEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 202 ~fD~V~~aa~v~~~----~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
.||+|+++--=.-+ .---.++...+.++++++|++++..+
T Consensus 365 ~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 365 MFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred cccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 59999987421111 11126788899999999999999764
No 227
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=97.92 E-value=3.8e-05 Score=73.02 Aligned_cols=102 Identities=22% Similarity=0.215 Sum_probs=72.1
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe-cccccc-cc-CC-Ccc
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC-DIMQVK-EK-LG-EYD 204 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~-D~~~~~-~~-~~-~fD 204 (284)
.++.+|+.+|+||+|+-++.+|+ .....+|+.+|++++.++.|++..... .+..... +..... .. .+ .+|
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~-~~Ga~~Viv~d~~~~Rl~~A~~~~g~~-----~~~~~~~~~~~~~~~~~t~g~g~D 240 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAK-LLGASVVIVVDRSPERLELAKEAGGAD-----VVVNPSEDDAGAEILELTGGRGAD 240 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH-HcCCceEEEeCCCHHHHHHHHHhCCCe-----EeecCccccHHHHHHHHhCCCCCC
Confidence 44459999999999999999998 455588999999999999999943221 1122111 111111 11 12 599
Q ss_pred EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCc
Q 036061 205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKG 243 (284)
Q Consensus 205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~g 243 (284)
+||-++.. ...+++..+.++|||.+++-...+
T Consensus 241 ~vie~~G~-------~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 241 VVIEAVGS-------PPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred EEEECCCC-------HHHHHHHHHHhcCCCEEEEEeccC
Confidence 99987663 237888999999999999987544
No 228
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.90 E-value=4.6e-05 Score=72.25 Aligned_cols=103 Identities=18% Similarity=0.184 Sum_probs=73.3
Q ss_pred HHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCC
Q 036061 122 ILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLG 201 (284)
Q Consensus 122 ~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~ 201 (284)
.|......++++|+.+|.|.+|..++.+|++ .|++|+++|++++-.+.|+++ | .. .++.+.-.+......
T Consensus 158 alk~~~~~pG~~V~I~G~GGlGh~avQ~Aka--~ga~Via~~~~~~K~e~a~~l----G---Ad-~~i~~~~~~~~~~~~ 227 (339)
T COG1064 158 ALKKANVKPGKWVAVVGAGGLGHMAVQYAKA--MGAEVIAITRSEEKLELAKKL----G---AD-HVINSSDSDALEAVK 227 (339)
T ss_pred ehhhcCCCCCCEEEEECCcHHHHHHHHHHHH--cCCeEEEEeCChHHHHHHHHh----C---Cc-EEEEcCCchhhHHhH
Confidence 3444457899999999999999999999993 669999999999998888874 3 12 222221111222222
Q ss_pred -CccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecC
Q 036061 202 -EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAK 242 (284)
Q Consensus 202 -~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~ 242 (284)
.||+|+.... ..-++...+.|++||++++-...
T Consensus 228 ~~~d~ii~tv~--------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 228 EIADAIIDTVG--------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred hhCcEEEECCC--------hhhHHHHHHHHhcCCEEEEECCC
Confidence 3999985422 34567778899999999987644
No 229
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.87 E-value=5e-05 Score=75.69 Aligned_cols=99 Identities=23% Similarity=0.280 Sum_probs=71.4
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc-------------
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ------------- 195 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~------------- 195 (284)
.++.+|+.+|+|+.|+.++.+|+ ..|+.|+.+|.+++..+.+++ +|. +++.-|..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak--~lGA~V~v~d~~~~rle~a~~----lGa-----~~v~v~~~e~g~~~~gYa~~~s 230 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAAN--SLGAIVRAFDTRPEVKEQVQS----MGA-----EFLELDFKEEGGSGDGYAKVMS 230 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHH----cCC-----eEEeccccccccccccceeecC
Confidence 57899999999999999999998 478999999999998777765 342 222222100
Q ss_pred ----------ccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061 196 ----------VKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR 239 (284)
Q Consensus 196 ----------~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r 239 (284)
+.....++|+||.++++...+.+ .=+.+++.+.||||++++=-
T Consensus 231 ~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP-~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 231 EEFIAAEMELFAAQAKEVDIIITTALIPGKPAP-KLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECcccCCCCCC-eeehHHHHhhCCCCCEEEEe
Confidence 12224579999998888332232 23778889999999997743
No 230
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=9.7e-05 Score=67.63 Aligned_cols=77 Identities=12% Similarity=0.138 Sum_probs=59.8
Q ss_pred hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCC-Cc
Q 036061 125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLG-EY 203 (284)
Q Consensus 125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~-~f 203 (284)
...+.++..|++||.|.+.+|... ++ .+.+|++|++|+..++.-++... ..++++++.+|++....+-- ++
T Consensus 25 ~a~~~~~d~VlEIGpG~GaLT~~L-l~---~~~~v~aiEiD~~l~~~L~~~~~----~~~n~~vi~~DaLk~d~~~l~~~ 96 (259)
T COG0030 25 AANISPGDNVLEIGPGLGALTEPL-LE---RAARVTAIEIDRRLAEVLKERFA----PYDNLTVINGDALKFDFPSLAQP 96 (259)
T ss_pred hcCCCCCCeEEEECCCCCHHHHHH-Hh---hcCeEEEEEeCHHHHHHHHHhcc----cccceEEEeCchhcCcchhhcCC
Confidence 445677899999999998888664 45 67889999999999998888655 23689999999976554311 57
Q ss_pred cEEEec
Q 036061 204 DCIFLA 209 (284)
Q Consensus 204 D~V~~a 209 (284)
+.|+.+
T Consensus 97 ~~vVaN 102 (259)
T COG0030 97 YKVVAN 102 (259)
T ss_pred CEEEEc
Confidence 888755
No 231
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.78 E-value=0.00014 Score=66.72 Aligned_cols=81 Identities=16% Similarity=0.217 Sum_probs=67.1
Q ss_pred HHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC
Q 036061 121 RILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL 200 (284)
Q Consensus 121 ~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~ 200 (284)
++..++...++..||+||-||+-+|-.+| . .|.+|+++++||.+++.-.+.++-.. .+...+++.||... .++
T Consensus 49 ~I~~ka~~k~tD~VLEvGPGTGnLT~~lL-e---~~kkVvA~E~Dprmvael~krv~gtp-~~~kLqV~~gD~lK--~d~ 121 (315)
T KOG0820|consen 49 QIVEKADLKPTDVVLEVGPGTGNLTVKLL-E---AGKKVVAVEIDPRMVAELEKRVQGTP-KSGKLQVLHGDFLK--TDL 121 (315)
T ss_pred HHHhccCCCCCCEEEEeCCCCCHHHHHHH-H---hcCeEEEEecCcHHHHHHHHHhcCCC-ccceeeEEeccccc--CCC
Confidence 34456677999999999999987776555 3 68999999999999999999998887 68899999999954 445
Q ss_pred CCccEEEe
Q 036061 201 GEYDCIFL 208 (284)
Q Consensus 201 ~~fD~V~~ 208 (284)
..||.++.
T Consensus 122 P~fd~cVs 129 (315)
T KOG0820|consen 122 PRFDGCVS 129 (315)
T ss_pred cccceeec
Confidence 67999875
No 232
>PRK10742 putative methyltransferase; Provisional
Probab=97.78 E-value=0.00015 Score=66.04 Aligned_cols=82 Identities=9% Similarity=0.205 Sum_probs=68.2
Q ss_pred CCCCCC--EEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc------CC-CCCCeEEEEecccccc
Q 036061 127 GVVNPK--KVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD------IE-FEKRMKFVTCDIMQVK 197 (284)
Q Consensus 127 ~~~~~~--~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~------G~-l~~~I~f~~~D~~~~~ 197 (284)
+++++. +|||.=+| +|-.++.+|. .|++|+.+|.||.+...-++.++++ +. +..+|+++++|+.++.
T Consensus 83 glk~g~~p~VLD~TAG-lG~Da~~las---~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L 158 (250)
T PRK10742 83 GIKGDYLPDVVDATAG-LGRDAFVLAS---VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL 158 (250)
T ss_pred CCCCCCCCEEEECCCC-ccHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHH
Confidence 456666 99999999 5788899988 6999999999999999999999885 31 2368999999999877
Q ss_pred ccCC-CccEEEecccc
Q 036061 198 EKLG-EYDCIFLAALV 212 (284)
Q Consensus 198 ~~~~-~fD~V~~aa~v 212 (284)
.... .||+||++..-
T Consensus 159 ~~~~~~fDVVYlDPMf 174 (250)
T PRK10742 159 TDITPRPQVVYLDPMF 174 (250)
T ss_pred hhCCCCCcEEEECCCC
Confidence 6543 59999999754
No 233
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.75 E-value=0.00021 Score=67.06 Aligned_cols=114 Identities=20% Similarity=0.290 Sum_probs=77.7
Q ss_pred HhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecc------cccc
Q 036061 124 DENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDI------MQVK 197 (284)
Q Consensus 124 ~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~------~~~~ 197 (284)
++.+.+.+.+||.+|+||+|+-++..|+ .+.-.+|+.+|+++.+++.|++ +|. +...-.... .+..
T Consensus 163 r~~~vk~Gs~vLV~GAGPIGl~t~l~Ak-a~GA~~VVi~d~~~~Rle~Ak~----~Ga---~~~~~~~~~~~~~~~~~~v 234 (354)
T KOG0024|consen 163 RRAGVKKGSKVLVLGAGPIGLLTGLVAK-AMGASDVVITDLVANRLELAKK----FGA---TVTDPSSHKSSPQELAELV 234 (354)
T ss_pred hhcCcccCCeEEEECCcHHHHHHHHHHH-HcCCCcEEEeecCHHHHHHHHH----hCC---eEEeeccccccHHHHHHHH
Confidence 3445689999999999999999999999 4556789999999999999998 442 222222221 1111
Q ss_pred c-cC--CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCccccccCccCC
Q 036061 198 E-KL--GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGARAFLYPVVE 253 (284)
Q Consensus 198 ~-~~--~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~glr~~lYp~v~ 253 (284)
. .+ ..||++|-.+.+ ...++.....+++||++++.. +|-...-+|..+
T Consensus 235 ~~~~g~~~~d~~~dCsG~-------~~~~~aai~a~r~gGt~vlvg-~g~~~~~fpi~~ 285 (354)
T KOG0024|consen 235 EKALGKKQPDVTFDCSGA-------EVTIRAAIKATRSGGTVVLVG-MGAEEIQFPIID 285 (354)
T ss_pred HhhccccCCCeEEEccCc-------hHHHHHHHHHhccCCEEEEec-cCCCccccChhh
Confidence 1 12 249999987765 234556677889999965543 554445555444
No 234
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.74 E-value=0.00013 Score=72.90 Aligned_cols=78 Identities=13% Similarity=0.125 Sum_probs=54.7
Q ss_pred CCCEEEEeccCCChhHHHHHHhhcC-------CCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc-----
Q 036061 130 NPKKVAFVGSGPMPLTSIVMAKNHL-------KSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK----- 197 (284)
Q Consensus 130 ~~~~VL~IGsG~lp~tai~LA~~~~-------~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~----- 197 (284)
.+.+|+|.|||++++..-.+.+ .. ....++|+|+|+.++..|+.++...+. ..+++.++|.....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~-~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~--~~~~i~~~d~l~~~~~~~~ 107 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKK-NEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL--LEINVINFNSLSYVLLNIE 107 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHH-HHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC--CCceeeecccccccccccc
Confidence 4579999999987776544433 21 125799999999999999999987762 34566666644211
Q ss_pred ccCCCccEEEecc
Q 036061 198 EKLGEYDCIFLAA 210 (284)
Q Consensus 198 ~~~~~fD~V~~aa 210 (284)
...+.||+|+.+.
T Consensus 108 ~~~~~fD~IIgNP 120 (524)
T TIGR02987 108 SYLDLFDIVITNP 120 (524)
T ss_pred cccCcccEEEeCC
Confidence 1224799999876
No 235
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.72 E-value=0.00075 Score=60.21 Aligned_cols=104 Identities=17% Similarity=0.158 Sum_probs=79.6
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
..+.+++||||-.. +=+++|-+ -.+-..+++.|+++..++.|.+++.+.+ +.++|+...+|+........++|.|.+
T Consensus 15 ~~~~~iaDIGsDHA-YLp~~Lv~-~~~~~~~va~eV~~gpl~~a~~~v~~~~-l~~~i~vr~~dgl~~l~~~d~~d~ivI 91 (226)
T COG2384 15 KQGARIADIGSDHA-YLPIYLVK-NNPASTAVAGEVVPGPLESAIRNVKKNN-LSERIDVRLGDGLAVLELEDEIDVIVI 91 (226)
T ss_pred HcCCceeeccCchh-HhHHHHHh-cCCcceEEEeecccCHHHHHHHHHHhcC-CcceEEEeccCCccccCccCCcCEEEE
Confidence 55667999999984 44455555 2567789999999999999999999999 899999999999776655457999988
Q ss_pred cccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061 209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLV 238 (284)
Q Consensus 209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~ 238 (284)
+.+ --.--.+++++-.+.++.=-++++
T Consensus 92 AGM---GG~lI~~ILee~~~~l~~~~rlIL 118 (226)
T COG2384 92 AGM---GGTLIREILEEGKEKLKGVERLIL 118 (226)
T ss_pred eCC---cHHHHHHHHHHhhhhhcCcceEEE
Confidence 743 223446788888887764344544
No 236
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.71 E-value=0.00048 Score=64.14 Aligned_cols=83 Identities=17% Similarity=0.090 Sum_probs=64.5
Q ss_pred cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc-----C
Q 036061 126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK-----L 200 (284)
Q Consensus 126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~-----~ 200 (284)
+.+.++...+|.==|.+|.|-..|.+ ....++++++|.||.|++.|++.....+ .|++++++.-.++... .
T Consensus 19 L~~~~~giyiD~TlG~GGHS~~iL~~-l~~~~~li~~DrD~~Ai~~a~~~l~~~~---~r~~~v~~~F~~l~~~l~~~~i 94 (314)
T COG0275 19 LAPKPDGIYIDGTLGAGGHSRAILEK-LPDLGRLIGIDRDPQAIAIAKERLKEFD---GRVTLVHGNFANLAEALKELGI 94 (314)
T ss_pred cccCCCcEEEEecCCCcHhHHHHHHh-CCCCCeEEEEcCCHHHHHHHHHHhhccC---CcEEEEeCcHHHHHHHHHhcCC
Confidence 35677788888777777999988887 3445779999999999999999998876 5999999987655432 2
Q ss_pred CCccEEEecccc
Q 036061 201 GEYDCIFLAALV 212 (284)
Q Consensus 201 ~~fD~V~~aa~v 212 (284)
+.+|-|+++-.|
T Consensus 95 ~~vDGiL~DLGV 106 (314)
T COG0275 95 GKVDGILLDLGV 106 (314)
T ss_pred CceeEEEEeccC
Confidence 367877766555
No 237
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.71 E-value=0.00015 Score=63.45 Aligned_cols=142 Identities=16% Similarity=0.223 Sum_probs=95.7
Q ss_pred CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061 131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA 210 (284)
Q Consensus 131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa 210 (284)
...+.|+|+|+++++ ..-|+ ..-+|.+|+.||...+.|.++++-.|+ .+++++.+|+.+..+ ..-|+|+..-
T Consensus 33 ~d~~~DLGaGsGiLs-~~Aa~---~A~rViAiE~dPk~a~~a~eN~~v~g~--~n~evv~gDA~~y~f--e~ADvvicEm 104 (252)
T COG4076 33 EDTFADLGAGSGILS-VVAAH---AAERVIAIEKDPKRARLAEENLHVPGD--VNWEVVVGDARDYDF--ENADVVICEM 104 (252)
T ss_pred hhceeeccCCcchHH-HHHHh---hhceEEEEecCcHHHHHhhhcCCCCCC--cceEEEecccccccc--cccceeHHHH
Confidence 478999999986654 44454 467899999999999999999988885 799999999987554 4578886332
Q ss_pred cc-cCChHHHHHHHHHHHhhcCCCcEEEEEe---c-C----ccccccCccCCC-ccCCC---cEEEEEecCCcceeeeEE
Q 036061 211 LV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS---A-K----GARAFLYPVVEK-HDLLD---FELLSVFHPTNEVINSVV 277 (284)
Q Consensus 211 ~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~---~-~----glr~~lYp~v~~-~dl~g---fe~~~~~hP~~~v~nsvi 277 (284)
+= .+-.++...+++.+.+.|+-++.++=.. + + .++...|..--+ ++... +|++.-..|..+|.|--+
T Consensus 105 lDTaLi~E~qVpV~n~vleFLr~d~tiiPq~v~~~a~pv~~~~~~i~Yde~l~se~~~p~~iye~v~f~k~~PEvy~~~l 184 (252)
T COG4076 105 LDTALIEEKQVPVINAVLEFLRYDPTIIPQEVRIGANPVRRPPRTIRYDEGLPSEDIEPEVIYEVVRFDKPIPEVYNKKL 184 (252)
T ss_pred hhHHhhcccccHHHHHHHHHhhcCCccccHHHhhccCccccCCcccccCCCCCccccCcceeEEEEeccCCCchhhccee
Confidence 10 1113666789999999999999987532 1 2 233444443212 23333 455433446667777544
Q ss_pred EEe
Q 036061 278 LVR 280 (284)
Q Consensus 278 ~~r 280 (284)
-.+
T Consensus 185 ele 187 (252)
T COG4076 185 ELE 187 (252)
T ss_pred EEe
Confidence 433
No 238
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.69 E-value=0.00014 Score=68.05 Aligned_cols=103 Identities=19% Similarity=0.217 Sum_probs=84.5
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
..+.+|..||.|-.|..|.-+|- ..|+.||-+|+|.+.+..-... .+ .|++..-....++.....+.|+|+-
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~--glgA~Vtild~n~~rl~~ldd~---f~---~rv~~~~st~~~iee~v~~aDlvIg 237 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAI--GLGADVTILDLNIDRLRQLDDL---FG---GRVHTLYSTPSNIEEAVKKADLVIG 237 (371)
T ss_pred CCCccEEEECCccccchHHHHHh--ccCCeeEEEecCHHHHhhhhHh---hC---ceeEEEEcCHHHHHHHhhhccEEEE
Confidence 56789999999999999999987 7899999999999887665553 33 4788888888777777788999998
Q ss_pred cccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+.+++-.+.+|. +.+++.+.||||++++=-.
T Consensus 238 aVLIpgakaPkL-vt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 238 AVLIPGAKAPKL-VTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred EEEecCCCCcee-hhHHHHHhcCCCcEEEEEE
Confidence 888865556664 8899999999999987543
No 239
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.68 E-value=0.00018 Score=58.81 Aligned_cols=59 Identities=15% Similarity=0.109 Sum_probs=50.3
Q ss_pred EEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc
Q 036061 133 KVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ 195 (284)
Q Consensus 133 ~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~ 195 (284)
.++|||||. |..++++++ ..++++|++||.+|.+.+.++++++..| + .+++++...+.+
T Consensus 1 ~vlDiGa~~-G~~~~~~~~-~~~~~~v~~~E~~~~~~~~l~~~~~~n~-~-~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANI-GDTSLYFAR-KGAEGRVIAFEPLPDAYEILEENVKLNN-L-PNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCc-cHHHHHHHH-hCCCCEEEEEecCHHHHHHHHHHHHHcC-C-CcEEEEEeeeeC
Confidence 379999995 778888887 5677899999999999999999999888 4 469999888754
No 240
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.66 E-value=0.0014 Score=59.35 Aligned_cols=111 Identities=21% Similarity=0.271 Sum_probs=69.0
Q ss_pred HHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-cC-
Q 036061 123 LDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-KL- 200 (284)
Q Consensus 123 l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-~~- 200 (284)
+.+.+.-.+++||+||-+= ++|+.+|- ..+..+|+.+|||+..++.=++.+++.|. +|+.+..|+.+-.+ .+
T Consensus 37 ~~~~gdL~gk~il~lGDDD--LtSlA~al-~~~~~~I~VvDiDeRll~fI~~~a~~~gl---~i~~~~~DlR~~LP~~~~ 110 (243)
T PF01861_consen 37 MAERGDLEGKRILFLGDDD--LTSLALAL-TGLPKRITVVDIDERLLDFINRVAEEEGL---PIEAVHYDLRDPLPEELR 110 (243)
T ss_dssp HHHTT-STT-EEEEES-TT---HHHHHHH-HT--SEEEEE-S-HHHHHHHHHHHHHHT-----EEEE---TTS---TTTS
T ss_pred HHhcCcccCCEEEEEcCCc--HHHHHHHh-hCCCCeEEEEEcCHHHHHHHHHHHHHcCC---ceEEEEecccccCCHHHh
Confidence 3455667899999999984 68888876 46778999999999999999999999995 49999999986433 33
Q ss_pred CCccEEEecccccCChHHHHHHHHHHHhhcCCCc-EEEEEec
Q 036061 201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGG-VLLVRSA 241 (284)
Q Consensus 201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg-~lv~r~~ 241 (284)
+.||++|.+.-- +.+--.-++..-...||.-| ...+..+
T Consensus 111 ~~fD~f~TDPPy--T~~G~~LFlsRgi~~Lk~~g~~gy~~~~ 150 (243)
T PF01861_consen 111 GKFDVFFTDPPY--TPEGLKLFLSRGIEALKGEGCAGYFGFT 150 (243)
T ss_dssp S-BSEEEE---S--SHHHHHHHHHHHHHTB-STT-EEEEEE-
T ss_pred cCCCEEEeCCCC--CHHHHHHHHHHHHHHhCCCCceEEEEEe
Confidence 579999988632 23444567777888888766 4444433
No 241
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.66 E-value=8e-05 Score=65.97 Aligned_cols=106 Identities=16% Similarity=0.173 Sum_probs=60.7
Q ss_pred CCCCEEEEeccCCChhHHHHHHhh---cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-----cC
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKN---HLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-----KL 200 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~---~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-----~~ 200 (284)
.+|+.|+++|.-. |-|++++|+. ....++|+|||||...... +..+..+ +.++|+|+.||..+... ..
T Consensus 31 ~kPd~IIE~Gi~~-GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp-~~~rI~~i~Gds~d~~~~~~v~~~ 106 (206)
T PF04989_consen 31 LKPDLIIETGIAH-GGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHP-MSPRITFIQGDSIDPEIVDQVREL 106 (206)
T ss_dssp H--SEEEEE--TT-SHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG-----TTEEEEES-SSSTHHHHTSGSS
T ss_pred hCCCeEEEEecCC-CchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhcc-ccCceEEEECCCCCHHHHHHHHHh
Confidence 4799999999964 6799988862 1267899999997544322 2233455 67899999999875321 11
Q ss_pred ---CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 201 ---GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 201 ---~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
....+|+.++... .+.-.+.|+.....+++|+.+|+.+
T Consensus 107 ~~~~~~vlVilDs~H~--~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 107 ASPPHPVLVILDSSHT--HEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp ----SSEEEEESS------SSHHHHHHHHHHT--TT-EEEETS
T ss_pred hccCCceEEEECCCcc--HHHHHHHHHHhCccCCCCCEEEEEe
Confidence 2456888887631 2445677888999999999999976
No 242
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.65 E-value=0.00027 Score=67.12 Aligned_cols=87 Identities=10% Similarity=0.221 Sum_probs=65.0
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
.++++++||||+|+|.|-. |.+ .|++|++||..+- +.+ +.. ..+|++..+|........+.+|+|+.
T Consensus 210 ~~g~~vlDLGAsPGGWT~~-L~~---rG~~V~AVD~g~l----~~~-L~~----~~~V~h~~~d~fr~~p~~~~vDwvVc 276 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQ-LVR---RGMFVTAVDNGPM----AQS-LMD----TGQVEHLRADGFKFRPPRKNVDWLVC 276 (357)
T ss_pred CCCCEEEEeCCCCcHHHHH-HHH---cCCEEEEEechhc----CHh-hhC----CCCEEEEeccCcccCCCCCCCCEEEE
Confidence 6889999999999999854 555 6889999996642 222 222 24899999999776554567999987
Q ss_pred cccccCChHHHHHHHHHHHhhcCCC
Q 036061 209 AALVGMSKEEKVKIIKHIRKYMKDG 233 (284)
Q Consensus 209 aa~v~~~~~~k~~il~~l~~~l~pG 233 (284)
+.. +...++.+.+.+.+..|
T Consensus 277 Dmv-----e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 277 DMV-----EKPARVAELMAQWLVNG 296 (357)
T ss_pred ecc-----cCHHHHHHHHHHHHhcC
Confidence 644 45557888888888777
No 243
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.63 E-value=0.00019 Score=63.04 Aligned_cols=103 Identities=20% Similarity=0.297 Sum_probs=77.0
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
..+++|||.|+|+ |+.++.-|+ .-...|+..|++|...+..+-+++..|. .|.|...|... +...||+++.
T Consensus 78 VrgkrVLd~gags-gLvaIAaa~--aGA~~v~a~d~~P~~~~ai~lNa~angv---~i~~~~~d~~g---~~~~~Dl~La 148 (218)
T COG3897 78 VRGKRVLDLGAGS-GLVAIAAAR--AGAAEVVAADIDPWLEQAIRLNAAANGV---SILFTHADLIG---SPPAFDLLLA 148 (218)
T ss_pred cccceeeeccccc-ChHHHHHHH--hhhHHHHhcCCChHHHHHhhcchhhccc---eeEEeeccccC---CCcceeEEEe
Confidence 6789999999997 788888777 2335699999999999999999999995 89999999854 4457999985
Q ss_pred cccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
.-++ .+...-.+++.-..+....|..+++-+.
T Consensus 149 gDlf-y~~~~a~~l~~~~~~l~~~g~~vlvgdp 180 (218)
T COG3897 149 GDLF-YNHTEADRLIPWKDRLAEAGAAVLVGDP 180 (218)
T ss_pred ecee-cCchHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 5443 3445556677755555555556665443
No 244
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=97.62 E-value=0.00032 Score=60.68 Aligned_cols=98 Identities=19% Similarity=0.254 Sum_probs=67.8
Q ss_pred EEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCC--------CCCeEEEEeccccc
Q 036061 133 KVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSS-------DIEF--------EKRMKFVTCDIMQV 196 (284)
Q Consensus 133 ~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~G~l--------~~~I~f~~~D~~~~ 196 (284)
+|..||+|.+|-. |.++|. .|.+|+-+|.|+++++.+++.+++ .|.+ .+++++. .|..+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~---~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~dl~~- 75 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR---AGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-TDLEE- 75 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH---TTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-SSGGG-
T ss_pred CEEEEcCCHHHHHHHHHHHh---CCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-cCHHH-
Confidence 6889999988744 344444 699999999999999999988765 1211 2456653 44322
Q ss_pred cccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 197 KEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 197 ~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
..+.|+|+-+. ..+.+-|.+++.++.+.++|+.+|...+
T Consensus 76 ---~~~adlViEai--~E~l~~K~~~~~~l~~~~~~~~ilasnT 114 (180)
T PF02737_consen 76 ---AVDADLVIEAI--PEDLELKQELFAELDEICPPDTILASNT 114 (180)
T ss_dssp ---GCTESEEEE-S---SSHHHHHHHHHHHHCCS-TTSEEEE--
T ss_pred ---Hhhhheehhhc--cccHHHHHHHHHHHHHHhCCCceEEecC
Confidence 23689998654 2456899999999999999999998876
No 245
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.59 E-value=0.00015 Score=64.34 Aligned_cols=88 Identities=22% Similarity=0.342 Sum_probs=55.0
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
.+...|+|.|||-.. ||+....+.+|+.+|.-. .. + .+..+|..++|-+.+..|+|++
T Consensus 71 ~~~~viaD~GCGdA~-----la~~~~~~~~V~SfDLva------------~n---~--~Vtacdia~vPL~~~svDv~Vf 128 (219)
T PF05148_consen 71 PKSLVIADFGCGDAK-----LAKAVPNKHKVHSFDLVA------------PN---P--RVTACDIANVPLEDESVDVAVF 128 (219)
T ss_dssp -TTS-EEEES-TT-H-----HHHH--S---EEEEESS-------------SS---T--TEEES-TTS-S--TT-EEEEEE
T ss_pred CCCEEEEECCCchHH-----HHHhcccCceEEEeeccC------------CC---C--CEEEecCccCcCCCCceeEEEE
Confidence 445799999999633 444333467899999872 12 2 3667999999988888999876
Q ss_pred cc-cccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 209 AA-LVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 209 aa-~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
+- +.| .+...++.+.+|.|||||.|.+...
T Consensus 129 cLSLMG---Tn~~~fi~EA~RvLK~~G~L~IAEV 159 (219)
T PF05148_consen 129 CLSLMG---TNWPDFIREANRVLKPGGILKIAEV 159 (219)
T ss_dssp ES---S---S-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EhhhhC---CCcHHHHHHHHheeccCcEEEEEEe
Confidence 53 444 6888999999999999999998764
No 246
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.56 E-value=0.00046 Score=64.11 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=73.2
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHh-----hcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc--
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAK-----NHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK-- 199 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~-----~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~-- 199 (284)
...++.+|+|-.||++++-.-.+.. ......++.|+|+|+.++..|+-++.-.|.-.....+..+|....+..
T Consensus 43 ~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~ 122 (311)
T PF02384_consen 43 NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIK 122 (311)
T ss_dssp TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTS
T ss_pred hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccc
Confidence 4567789999999987764333321 013678999999999999999987755552123356889998654443
Q ss_pred CCCccEEEecccccCC---hH-----------------HHHHHHHHHHhhcCCCcEEEEEec
Q 036061 200 LGEYDCIFLAALVGMS---KE-----------------EKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 200 ~~~fD~V~~aa~v~~~---~~-----------------~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
...||+|+...--+.. .. .-..++.++.+.|++||++++--+
T Consensus 123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp T--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 2479999977633221 00 113588999999999998766543
No 247
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.54 E-value=0.00053 Score=66.90 Aligned_cols=108 Identities=14% Similarity=0.062 Sum_probs=72.1
Q ss_pred chhhhhhHHHHHHHHhcC--CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeE
Q 036061 110 GNYVKLANLEYRILDENG--VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMK 187 (284)
Q Consensus 110 ~ny~~l~~~E~~~l~~~~--~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~ 187 (284)
+|-....+--+..+.+.. ..++++|+.+|+|++|......++ ..|++|+.+|+|+...+.|++ .|. +
T Consensus 179 dn~~g~g~s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak--~~Ga~ViV~d~d~~R~~~A~~----~G~-----~ 247 (413)
T cd00401 179 DNLYGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLR--GQGARVIVTEVDPICALQAAM----EGY-----E 247 (413)
T ss_pred cccchhchhhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEECChhhHHHHHh----cCC-----E
Confidence 443333333334444432 258899999999999999888887 578999999999998777765 462 1
Q ss_pred EEEeccccccccCCCccEEEecccccCChHHHHHHHHH-HHhhcCCCcEEEEEe
Q 036061 188 FVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKH-IRKYMKDGGVLLVRS 240 (284)
Q Consensus 188 f~~~D~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~-l~~~l~pGg~lv~r~ 240 (284)
.. +..+ ....+|+||.+... + .++.. ..+.|++||+++.-.
T Consensus 248 ~~--~~~e---~v~~aDVVI~atG~------~-~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 248 VM--TMEE---AVKEGDIFVTTTGN------K-DIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred Ec--cHHH---HHcCCCEEEECCCC------H-HHHHHHHHhcCCCCcEEEEeC
Confidence 11 1112 22468999875432 2 34444 588999999987654
No 248
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.53 E-value=0.00023 Score=66.84 Aligned_cols=81 Identities=16% Similarity=0.149 Sum_probs=56.1
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc------cC
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE------KL 200 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~------~~ 200 (284)
.+.++...+|-=-|.+|-|...|.+ .++++++|+|.||+|++.|++.+... .+++.|++++-.++.. ..
T Consensus 17 ~~~~~g~~vD~T~G~GGHS~aiL~~--~~~~~li~~DrD~~a~~~a~~~l~~~---~~r~~~~~~~F~~l~~~l~~~~~~ 91 (310)
T PF01795_consen 17 NPKPGGIYVDCTFGGGGHSKAILEK--LPNGRLIGIDRDPEALERAKERLKKF---DDRFIFIHGNFSNLDEYLKELNGI 91 (310)
T ss_dssp T--TT-EEEETT-TTSHHHHHHHHT---TT-EEEEEES-HHHHHHHHCCTCCC---CTTEEEEES-GGGHHHHHHHTTTT
T ss_pred CcCCCceEEeecCCcHHHHHHHHHh--CCCCeEEEecCCHHHHHHHHHHHhhc---cceEEEEeccHHHHHHHHHHccCC
Confidence 4577888999766777999888876 67799999999999999999977654 4699999999876543 23
Q ss_pred CCccEEEecccc
Q 036061 201 GEYDCIFLAALV 212 (284)
Q Consensus 201 ~~fD~V~~aa~v 212 (284)
..+|.|+++-.|
T Consensus 92 ~~~dgiL~DLGv 103 (310)
T PF01795_consen 92 NKVDGILFDLGV 103 (310)
T ss_dssp S-EEEEEEE-S-
T ss_pred CccCEEEEcccc
Confidence 468988877544
No 249
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.0022 Score=56.76 Aligned_cols=128 Identities=19% Similarity=0.189 Sum_probs=87.7
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc------cCC
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE------KLG 201 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~------~~~ 201 (284)
..++++|+|+|+-|+|.|=+ +++....+..|++||+.|-. .-..|.|+.+|.++-.. .++
T Consensus 43 ~~~~~~ViDLGAAPGgWsQv-a~~~~~~~~~ivavDi~p~~-------------~~~~V~~iq~d~~~~~~~~~l~~~l~ 108 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQV-AAKKLGAGGKIVAVDILPMK-------------PIPGVIFLQGDITDEDTLEKLLEALG 108 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHH-HHHHhCCCCcEEEEECcccc-------------cCCCceEEeeeccCccHHHHHHHHcC
Confidence 37889999999999998744 55545666779999999743 23469999999986321 222
Q ss_pred --CccEEEeccc--c-cCCh-------HHHHHHHHHHHhhcCCCcEEEEEecCcccc--ccCccCCCccC-CCcEEEEEe
Q 036061 202 --EYDCIFLAAL--V-GMSK-------EEKVKIIKHIRKYMKDGGVLLVRSAKGARA--FLYPVVEKHDL-LDFELLSVF 266 (284)
Q Consensus 202 --~fD~V~~aa~--v-~~~~-------~~k~~il~~l~~~l~pGg~lv~r~~~glr~--~lYp~v~~~dl-~gfe~~~~~ 266 (284)
.+|+|+.+.. + |... .--..+++-...+|+|||.+++-...|--. +++ .+ ..|+.+...
T Consensus 109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~------~~~~~F~~v~~~ 182 (205)
T COG0293 109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLK------ALRRLFRKVKIF 182 (205)
T ss_pred CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHH------HHHHhhceeEEe
Confidence 3799995532 2 2211 123556667778999999999988665211 111 12 468888888
Q ss_pred cCCcceeee
Q 036061 267 HPTNEVINS 275 (284)
Q Consensus 267 hP~~~v~ns 275 (284)
.|..-.-||
T Consensus 183 KP~aSR~~S 191 (205)
T COG0293 183 KPKASRKRS 191 (205)
T ss_pred cCccccCCC
Confidence 888877776
No 250
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=97.45 E-value=0.0024 Score=56.86 Aligned_cols=107 Identities=17% Similarity=0.156 Sum_probs=79.9
Q ss_pred CCCCEEEEeccCCCh-hHHHHHHhh-cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecc-ccccccCCCccE
Q 036061 129 VNPKKVAFVGSGPMP-LTSIVMAKN-HLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDI-MQVKEKLGEYDC 205 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp-~tai~LA~~-~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~-~~~~~~~~~fD~ 205 (284)
...+.++++.|+..+ -|++-||-+ ..+|+++++|-.+++.....++.+...| +.+.++|+.||. .++...+...|+
T Consensus 40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~-~~~~vEfvvg~~~e~~~~~~~~iDF 118 (218)
T PF07279_consen 40 WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAG-LSDVVEFVVGEAPEEVMPGLKGIDF 118 (218)
T ss_pred ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcc-ccccceEEecCCHHHHHhhccCCCE
Confidence 566889999765222 245555543 3789999999999999999999999889 688889999985 456777888999
Q ss_pred EEecccccCChHHHH-HHHHHHHhhcCCCcEEEEEec
Q 036061 206 IFLAALVGMSKEEKV-KIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 206 V~~aa~v~~~~~~k~-~il~~l~~~l~pGg~lv~r~~ 241 (284)
++++.-. ++.. ++|+. .+.=+.|++++..++
T Consensus 119 ~vVDc~~----~d~~~~vl~~-~~~~~~GaVVV~~Na 150 (218)
T PF07279_consen 119 VVVDCKR----EDFAARVLRA-AKLSPRGAVVVCYNA 150 (218)
T ss_pred EEEeCCc----hhHHHHHHHH-hccCCCceEEEEecc
Confidence 9998764 6666 77775 444355666666664
No 251
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=97.45 E-value=0.00082 Score=61.33 Aligned_cols=102 Identities=13% Similarity=0.076 Sum_probs=67.7
Q ss_pred HhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE--eccccccccC
Q 036061 124 DENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVSSDIEFEKRMKFVT--CDIMQVKEKL 200 (284)
Q Consensus 124 ~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~--~D~~~~~~~~ 200 (284)
.+....++++||.+|+|++|..++.+|+ ..|++ |+++|.+++..+.|++ +|. ..-+.... ..+.+.. ..
T Consensus 114 ~~~~~~~g~~VlV~G~G~vG~~~~~~ak--~~G~~~Vi~~~~~~~r~~~a~~----~Ga-~~~i~~~~~~~~~~~~~-~~ 185 (280)
T TIGR03366 114 EAAGDLKGRRVLVVGAGMLGLTAAAAAA--AAGAARVVAADPSPDRRELALS----FGA-TALAEPEVLAERQGGLQ-NG 185 (280)
T ss_pred HhccCCCCCEEEEECCCHHHHHHHHHHH--HcCCCEEEEECCCHHHHHHHHH----cCC-cEecCchhhHHHHHHHh-CC
Confidence 3444567899999999999999999999 35776 9999999988877766 452 11111100 0011111 11
Q ss_pred CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
..+|+||-+... ...++...+.++|||++++-.
T Consensus 186 ~g~d~vid~~G~-------~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 186 RGVDVALEFSGA-------TAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CCCCEEEECCCC-------hHHHHHHHHHhcCCCEEEEec
Confidence 359999864331 235677888999999998765
No 252
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=97.43 E-value=0.00085 Score=63.09 Aligned_cols=96 Identities=15% Similarity=0.178 Sum_probs=66.3
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF 207 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~ 207 (284)
..++++||.+|+|++|+.++.+|++...+++|+++|.+++..+.|++ .|. . +...+ .... ..+|+||
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~----~-~~~~~---~~~~-~g~d~vi 227 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE----T-YLIDD---IPED-LAVDHAF 227 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc----e-eehhh---hhhc-cCCcEEE
Confidence 46789999999999999988888733446789999999998888865 331 1 11111 1111 2589998
Q ss_pred ecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
-+..- ......++...+.|++||++++-.
T Consensus 228 D~~G~----~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 228 ECVGG----RGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred ECCCC----CccHHHHHHHHHhCcCCcEEEEEe
Confidence 54431 112346788889999999998754
No 253
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.43 E-value=0.00092 Score=63.16 Aligned_cols=101 Identities=19% Similarity=0.185 Sum_probs=69.6
Q ss_pred CCEEEEeccCCChhHHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCC----CCCCeEEEEeccccccc
Q 036061 131 PKKVAFVGSGPMPLTSI-VMAKNHLKSTHFDNFDIDEAANDVARQIVSS-------DIE----FEKRMKFVTCDIMQVKE 198 (284)
Q Consensus 131 ~~~VL~IGsG~lp~tai-~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~G~----l~~~I~f~~~D~~~~~~ 198 (284)
-++|..||+|.+|..-. .+| ..|.+|+.+|+++++.+.+++.+++ .|. ...++++.. |.. .
T Consensus 7 i~~VaVIGaG~MG~giA~~~a---~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~---~ 79 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARAL---AHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIE---A 79 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHH---hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHH---H
Confidence 47899999998875522 233 3799999999999998887765432 221 113445432 322 2
Q ss_pred cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 199 KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 199 ~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
..++.|+|+.+. ..+.+-|..+++++.+.++|+.+|...+
T Consensus 80 av~~aDlViEav--pE~l~vK~~lf~~l~~~~~~~aIlaSnT 119 (321)
T PRK07066 80 CVADADFIQESA--PEREALKLELHERISRAAKPDAIIASST 119 (321)
T ss_pred HhcCCCEEEECC--cCCHHHHHHHHHHHHHhCCCCeEEEECC
Confidence 345789999763 3455789999999999999998655544
No 254
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=97.43 E-value=0.00068 Score=63.83 Aligned_cols=97 Identities=16% Similarity=0.273 Sum_probs=65.8
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeC---ChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDI---DEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD 204 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDi---d~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD 204 (284)
..++.+|+.+|+|++|..++.+|+ ..|++|++++. +++..+.++ ++|. +.+.....|..+ ......||
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak--~~G~~vi~~~~~~~~~~~~~~~~----~~Ga--~~v~~~~~~~~~-~~~~~~~d 240 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLR--LRGFEVYVLNRRDPPDPKADIVE----ELGA--TYVNSSKTPVAE-VKLVGEFD 240 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHH--HcCCeEEEEecCCCCHHHHHHHH----HcCC--EEecCCccchhh-hhhcCCCC
Confidence 457899999999999999999999 46889999997 666666554 4663 112111111111 11124699
Q ss_pred EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+||-+..- ...+....+.|++||.+++-.
T Consensus 241 ~vid~~g~-------~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 241 LIIEATGV-------PPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred EEEECcCC-------HHHHHHHHHHccCCcEEEEEe
Confidence 99865442 126778889999999988754
No 255
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.39 E-value=0.00096 Score=61.01 Aligned_cols=95 Identities=16% Similarity=0.201 Sum_probs=65.4
Q ss_pred CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061 130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA 209 (284)
Q Consensus 130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a 209 (284)
...++||||+|-++.|.. ||. ++ .+|++.|.|+.|. ..+++-|. +.+ |..++.....+||+|-.-
T Consensus 94 ~~~~lLDlGAGdG~VT~~-l~~-~f--~~v~aTE~S~~Mr----~rL~~kg~-----~vl--~~~~w~~~~~~fDvIscL 158 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTER-LAP-LF--KEVYATEASPPMR----WRLSKKGF-----TVL--DIDDWQQTDFKFDVISCL 158 (265)
T ss_pred cCCceEEecCCCcHHHHH-HHh-hc--ceEEeecCCHHHH----HHHHhCCC-----eEE--ehhhhhccCCceEEEeeh
Confidence 567999999999877755 566 33 4599999999993 34444552 333 333344333479999654
Q ss_pred ccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 210 ALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 210 a~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.+.--. .....+|+++++.|+|+|++++.-
T Consensus 159 NvLDRc-~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 159 NVLDRC-DRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred hhhhcc-CCHHHHHHHHHHHhCCCCEEEEEE
Confidence 443111 445689999999999999998844
No 256
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=0.0011 Score=65.51 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=76.2
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CC---
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GE--- 202 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~--- 202 (284)
+...++-++|+-||+ |...+.+|+ +-.+|.||+++|++++-|++++...|. .+.+|++|-++++...+ +.
T Consensus 380 ~l~~~k~llDv~CGT-G~iglala~---~~~~ViGvEi~~~aV~dA~~nA~~Ngi--sNa~Fi~gqaE~~~~sl~~~~~~ 453 (534)
T KOG2187|consen 380 GLPADKTLLDVCCGT-GTIGLALAR---GVKRVIGVEISPDAVEDAEKNAQINGI--SNATFIVGQAEDLFPSLLTPCCD 453 (534)
T ss_pred CCCCCcEEEEEeecC-Cceehhhhc---cccceeeeecChhhcchhhhcchhcCc--cceeeeecchhhccchhcccCCC
Confidence 457789999999997 677788988 668899999999999999999999995 68999999777654432 22
Q ss_pred -cc-EEEeccc-ccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 203 -YD-CIFLAAL-VGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 203 -fD-~V~~aa~-v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
=+ +++++.- .|++ ..+++.+.++-++- ++++++
T Consensus 454 ~~~~v~iiDPpR~Glh----~~~ik~l~~~~~~~-rlvyvS 489 (534)
T KOG2187|consen 454 SETLVAIIDPPRKGLH----MKVIKALRAYKNPR-RLVYVS 489 (534)
T ss_pred CCceEEEECCCccccc----HHHHHHHHhccCcc-ceEEEE
Confidence 24 4555543 3443 45777777774444 455555
No 257
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.35 E-value=0.0027 Score=58.60 Aligned_cols=104 Identities=16% Similarity=0.217 Sum_probs=79.7
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC---------------------------
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE--------------------------- 181 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~--------------------------- 181 (284)
..+.+||.-||| +|--+.-+|+ .|..+.|.|.|--|+=.++-++.....
T Consensus 55 ~~~~~VLVPGsG-LGRLa~Eia~---~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~ 130 (270)
T PF07942_consen 55 RSKIRVLVPGSG-LGRLAWEIAK---LGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVR 130 (270)
T ss_pred CCccEEEEcCCC-cchHHHHHhh---ccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceE
Confidence 456899999999 6777888998 699999999999998777766553000
Q ss_pred -----------CCCCeEEEEeccccccccC---CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEE
Q 036061 182 -----------FEKRMKFVTCDIMQVKEKL---GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLL 237 (284)
Q Consensus 182 -----------l~~~I~f~~~D~~~~~~~~---~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv 237 (284)
-..++.+..||..++-... +.||+|+.+-++ -++++-.+.++.|.+.|||||..|
T Consensus 131 iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFI-DTA~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 131 IPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFI-DTAENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred eCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEe-echHHHHHHHHHHHHHhccCCEEE
Confidence 1246777888887766555 579999877665 235778899999999999999654
No 258
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.34 E-value=0.00081 Score=55.69 Aligned_cols=78 Identities=21% Similarity=0.163 Sum_probs=59.4
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhc---CCCcEEEEEeCChHHHHHHHHHHHhcCC-CCCCeEEEEeccccccccCCCc
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNH---LKSTHFDNFDIDEAANDVARQIVSSDIE-FEKRMKFVTCDIMQVKEKLGEY 203 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~---~~g~~V~~iDid~~ai~~Ar~~~~~~G~-l~~~I~f~~~D~~~~~~~~~~f 203 (284)
..++.+|+|+|||- |+-+..||... .++.+|++||.++..++.|++..++.+. +.+++++..++..+... ....
T Consensus 23 ~~~~~~vvD~GsG~-GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 100 (141)
T PF13679_consen 23 SKRCITVVDLGSGK-GYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPP 100 (141)
T ss_pred cCCCCEEEEeCCCh-hHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCC
Confidence 36789999999995 78788887611 3889999999999999999999998872 24678888887754332 2345
Q ss_pred cEEE
Q 036061 204 DCIF 207 (284)
Q Consensus 204 D~V~ 207 (284)
++++
T Consensus 101 ~~~v 104 (141)
T PF13679_consen 101 DILV 104 (141)
T ss_pred eEEE
Confidence 5555
No 259
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=97.33 E-value=0.0024 Score=59.83 Aligned_cols=96 Identities=15% Similarity=0.081 Sum_probs=68.1
Q ss_pred HhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCc
Q 036061 124 DENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEY 203 (284)
Q Consensus 124 ~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~f 203 (284)
.+...+++.+||..|+|++|..++.+|+ ..|++|+++|.+++..+.|++ +|. ..-+. ..+ .....+
T Consensus 159 ~~~~~~~g~~VlV~G~g~iG~~a~~~a~--~~G~~vi~~~~~~~~~~~a~~----~Ga-~~vi~-----~~~--~~~~~~ 224 (329)
T TIGR02822 159 LRASLPPGGRLGLYGFGGSAHLTAQVAL--AQGATVHVMTRGAAARRLALA----LGA-ASAGG-----AYD--TPPEPL 224 (329)
T ss_pred HhcCCCCCCEEEEEcCCHHHHHHHHHHH--HCCCeEEEEeCChHHHHHHHH----hCC-ceecc-----ccc--cCcccc
Confidence 3445678999999999999999999999 468899999999988666655 663 21111 111 111358
Q ss_pred cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
|+++....+ . ..+....+.+++||++++-.
T Consensus 225 d~~i~~~~~----~---~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 225 DAAILFAPA----G---GLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred eEEEECCCc----H---HHHHHHHHhhCCCcEEEEEe
Confidence 988765443 2 36788889999999998754
No 260
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.31 E-value=0.0057 Score=57.99 Aligned_cols=194 Identities=15% Similarity=0.132 Sum_probs=121.2
Q ss_pred CCCCchh--HHHHHHHHHHhccCCcc-cc--------ccc--Cch-hHHHHHHHHHHHHHHhhHhhhHHHHHHhcCCCCc
Q 036061 34 SLKPSKQ--VNSLFTHLVKLCTPPSS-ID--------IKT--LPQ-EVQEMRESLIVLCGRAEGLLELEFATFFAKTPQP 99 (284)
Q Consensus 34 ~l~p~~~--vn~lf~~Lv~lc~~~~~-~~--------~~~--~~~-~~~~l~~~l~~l~~~~e~~lE~~~a~~l~~~~~p 99 (284)
+.+|... .+.++--|++.....+. +. +.. +.. .-.++.+.+-...++....-..+|.+.+..+.+|
T Consensus 51 ~~~~~~p~ll~r~lr~L~s~~i~k~~~~~~~~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~ 130 (342)
T KOG3178|consen 51 PKNPEAPVLLDRILRLLVSYSILKCRLVGGEVYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGGDA 130 (342)
T ss_pred CCCCCChhHHHHHHHHHHHhhhceeeeecceeeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcccC
Confidence 3444432 66677777766654331 11 110 111 1245556666777777778888999999988665
Q ss_pred cccc---ccCCCcchhh---hhhHH---HHHHHHhc-------CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEe
Q 036061 100 LNNL---NLFPYYGNYV---KLANL---EYRILDEN-------GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFD 163 (284)
Q Consensus 100 ~~~L---~~fpy~~ny~---~l~~~---E~~~l~~~-------~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iD 163 (284)
...- ..|-|..-.. ..++. ....+..- +...-...+|+|+|.+-.+..++ . .+|. |.+|+
T Consensus 131 ~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll-~-~fp~--ik~in 206 (342)
T KOG3178|consen 131 FATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLL-S-KYPH--IKGIN 206 (342)
T ss_pred CccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHH-H-hCCC--Cceee
Confidence 5544 2355554333 22221 11111110 11234899999999655554444 4 4655 77777
Q ss_pred CChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 164 IDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 164 id~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.|..-+..++.... .| |+.+-||...- ...-|+||+.-.+ +|+.++=.++|+++++-|+|||.+++-.
T Consensus 207 fdlp~v~~~a~~~~-~g-----V~~v~gdmfq~---~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E 275 (342)
T KOG3178|consen 207 FDLPFVLAAAPYLA-PG-----VEHVAGDMFQD---TPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVE 275 (342)
T ss_pred cCHHHHHhhhhhhc-CC-----cceeccccccc---CCCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 77777777777654 44 78888998642 3346799876544 8899999999999999999999998855
No 261
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.31 E-value=0.0027 Score=58.83 Aligned_cols=99 Identities=20% Similarity=0.305 Sum_probs=69.7
Q ss_pred CEEEEeccCCChhHH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCCC--------CCeEEEEecccc
Q 036061 132 KKVAFVGSGPMPLTS-IVMAKNHLKSTHFDNFDIDEAANDVARQIVSS-------DIEFE--------KRMKFVTCDIMQ 195 (284)
Q Consensus 132 ~~VL~IGsG~lp~ta-i~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~G~l~--------~~I~f~~~D~~~ 195 (284)
++|..||+|.+|..- ..+|+ .|.+|+.+|+++++++.+++.+++ .|.+. .++++ +.|.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~---~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~-- 79 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCAR---AGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDL-- 79 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHh---CCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCH--
Confidence 589999999877552 22343 799999999999999997766432 23111 23333 2332
Q ss_pred ccccCCCccEEEecccccCChHHHHHHHHHHHhhc-CCCcEEEEEe
Q 036061 196 VKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYM-KDGGVLLVRS 240 (284)
Q Consensus 196 ~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l-~pGg~lv~r~ 240 (284)
....+.|+|+.+. ..+.+-|..++..+-+.+ +||.+++..+
T Consensus 80 --~~~~~~d~ViEav--~E~~~~K~~l~~~l~~~~~~~~~il~snT 121 (286)
T PRK07819 80 --GDFADRQLVIEAV--VEDEAVKTEIFAELDKVVTDPDAVLASNT 121 (286)
T ss_pred --HHhCCCCEEEEec--ccCHHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 2346789999763 345688999999999998 8888887755
No 262
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.30 E-value=0.00049 Score=59.92 Aligned_cols=102 Identities=20% Similarity=0.343 Sum_probs=62.4
Q ss_pred CEEEEeccCCChh-HHHHHHhhcCCCcEEEEEeCChHHHHHHHH------------HHHhcCCCCCCeEEEEeccccccc
Q 036061 132 KKVAFVGSGPMPL-TSIVMAKNHLKSTHFDNFDIDEAANDVARQ------------IVSSDIEFEKRMKFVTCDIMQVKE 198 (284)
Q Consensus 132 ~~VL~IGsG~lp~-tai~LA~~~~~g~~V~~iDid~~ai~~Ar~------------~~~~~G~l~~~I~f~~~D~~~~~~ 198 (284)
++|..||.|-+|+ +|..||+ .|.+|+|+|+|++.++.-++ ++++.. -..+.+|. .|..+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~---~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~-~~~~l~~t-~~~~~--- 72 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAE---KGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENV-SAGRLRAT-TDIEE--- 72 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHH---TTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHH-HTTSEEEE-SEHHH---
T ss_pred CEEEEECCCcchHHHHHHHHh---CCCEEEEEeCChHHHHHHhhccccccccchhhhhcccc-ccccchhh-hhhhh---
Confidence 5899999997775 4667777 89999999999998877652 222221 02345553 33322
Q ss_pred cCCCccEEEecccccC------ChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 199 KLGEYDCIFLAALVGM------SKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 199 ~~~~fD~V~~aa~v~~------~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
.....|++|++.-... +...-..+++.+.+.+++|.+++++|.
T Consensus 73 ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~ST 121 (185)
T PF03721_consen 73 AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIEST 121 (185)
T ss_dssp HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSS
T ss_pred hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccE
Confidence 2235799987753211 123347889999999999999999983
No 263
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.30 E-value=0.0021 Score=59.11 Aligned_cols=99 Identities=21% Similarity=0.243 Sum_probs=67.0
Q ss_pred CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHH-------HhcCCCC--------CCeEEEEeccccc
Q 036061 132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIV-------SSDIEFE--------KRMKFVTCDIMQV 196 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~-------~~~G~l~--------~~I~f~~~D~~~~ 196 (284)
++|..||+|.+|.+-..... ..|.+|+.+|++++.++.+++.+ .+.|.+. .++++ +.|..
T Consensus 4 ~kI~VIG~G~mG~~ia~~la--~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~-- 78 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCA--VAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLD-- 78 (282)
T ss_pred cEEEEEccCHHHHHHHHHHH--HCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHH--
Confidence 47999999987766433332 36789999999999998776433 2233111 13443 23321
Q ss_pred cccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061 197 KEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR 239 (284)
Q Consensus 197 ~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r 239 (284)
..++.|+|+.+.. .+..-|.++++++.+.++|+.+++..
T Consensus 79 --~~~~aDlVi~av~--e~~~~k~~~~~~l~~~~~~~~il~s~ 117 (282)
T PRK05808 79 --DLKDADLVIEAAT--ENMDLKKKIFAQLDEIAKPEAILATN 117 (282)
T ss_pred --HhccCCeeeeccc--ccHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 2457899998753 23467889999999999999887443
No 264
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.29 E-value=0.0026 Score=56.88 Aligned_cols=109 Identities=15% Similarity=0.165 Sum_probs=80.2
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC--CCccE
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL--GEYDC 205 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~--~~fD~ 205 (284)
-.++.|||.||=| +|+..-.+.. .+-..=+-|+..|+..++-|...=.. .++|-...|-..++...+ +.||-
T Consensus 99 ~tkggrvLnVGFG-MgIidT~iQe--~~p~~H~IiE~hp~V~krmr~~gw~e---k~nViil~g~WeDvl~~L~d~~FDG 172 (271)
T KOG1709|consen 99 STKGGRVLNVGFG-MGIIDTFIQE--APPDEHWIIEAHPDVLKRMRDWGWRE---KENVIILEGRWEDVLNTLPDKHFDG 172 (271)
T ss_pred hhCCceEEEeccc-hHHHHHHHhh--cCCcceEEEecCHHHHHHHHhccccc---ccceEEEecchHhhhccccccCcce
Confidence 3789999999999 7877666655 34445566899999988777643222 357777777766666544 46999
Q ss_pred EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCc
Q 036061 206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKG 243 (284)
Q Consensus 206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~g 243 (284)
|+.+.+- ..-++-..+.+++.+.|||||++.+=++-|
T Consensus 173 I~yDTy~-e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~ 209 (271)
T KOG1709|consen 173 IYYDTYS-ELYEDLRHFHQHVVRLLKPEGVFSYFNGLG 209 (271)
T ss_pred eEeechh-hHHHHHHHHHHHHhhhcCCCceEEEecCcc
Confidence 9988763 223777889999999999999988766533
No 265
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.25 E-value=0.0026 Score=61.68 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=84.9
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-cC-CCccE
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-KL-GEYDC 205 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-~~-~~fD~ 205 (284)
++++.||||..+-|+|=|+. +|..+.-.+.|.+-|.+...+..-+.+++++|. ++.-....|..+++. .. ++||-
T Consensus 239 Pq~gERIlDmcAAPGGKTt~-IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv--~ntiv~n~D~~ef~~~~~~~~fDR 315 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTH-IAALMKNTGVIFANDSNENRLKSLKANLHRLGV--TNTIVSNYDGREFPEKEFPGSFDR 315 (460)
T ss_pred CCCCCeecchhcCCCchHHH-HHHHHcCCceEEecccchHHHHHHHHHHHHhCC--CceEEEccCcccccccccCcccce
Confidence 58899999999999998865 555345567899999999999999999999995 566667788876542 12 26999
Q ss_pred EEecccc-c--CChHH------------------HHHHHHHHHhhcCCCcEEEEEe
Q 036061 206 IFLAALV-G--MSKEE------------------KVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 206 V~~aa~v-~--~~~~~------------------k~~il~~l~~~l~pGg~lv~r~ 240 (284)
|.++|-- | +-..+ ..++|.+....+++||+||+.+
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 9988732 2 21000 1678888999999999999977
No 266
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.22 E-value=0.0019 Score=58.98 Aligned_cols=105 Identities=16% Similarity=0.205 Sum_probs=68.3
Q ss_pred HhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC---
Q 036061 124 DENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL--- 200 (284)
Q Consensus 124 ~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~--- 200 (284)
......++..|+|||.|+|-+|... ++ .+.+|+++|+|+...+.-++.+. ...+++++.+|+.++....
T Consensus 24 ~~~~~~~~~~VlEiGpG~G~lT~~L-~~---~~~~v~~vE~d~~~~~~L~~~~~----~~~~~~vi~~D~l~~~~~~~~~ 95 (262)
T PF00398_consen 24 DALDLSEGDTVLEIGPGPGALTREL-LK---RGKRVIAVEIDPDLAKHLKERFA----SNPNVEVINGDFLKWDLYDLLK 95 (262)
T ss_dssp HHHTCGTTSEEEEESSTTSCCHHHH-HH---HSSEEEEEESSHHHHHHHHHHCT----TCSSEEEEES-TTTSCGGGHCS
T ss_pred HhcCCCCCCEEEEeCCCCccchhhH-hc---ccCcceeecCcHhHHHHHHHHhh----hcccceeeecchhccccHHhhc
Confidence 3445668999999999998777665 44 33899999999999888887555 2368999999998755432
Q ss_pred CCccEEEecccccCChHHHHHHHHHHHhhcCCC---cEEEEEe
Q 036061 201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDG---GVLLVRS 240 (284)
Q Consensus 201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pG---g~lv~r~ 240 (284)
.....|+ +.+ .. .--..++.++...-+.| ..+++..
T Consensus 96 ~~~~~vv-~Nl-Py--~is~~il~~ll~~~~~g~~~~~l~vq~ 134 (262)
T PF00398_consen 96 NQPLLVV-GNL-PY--NISSPILRKLLELYRFGRVRMVLMVQK 134 (262)
T ss_dssp SSEEEEE-EEE-TG--TGHHHHHHHHHHHGGGCEEEEEEEEEH
T ss_pred CCceEEE-EEe-cc--cchHHHHHHHhhcccccccceEEEEeh
Confidence 1223444 333 11 22245777777644443 4455543
No 267
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.21 E-value=0.0022 Score=59.27 Aligned_cols=98 Identities=18% Similarity=0.192 Sum_probs=65.5
Q ss_pred CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc----------CCC--------CCCeEEEEecc
Q 036061 132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD----------IEF--------EKRMKFVTCDI 193 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~----------G~l--------~~~I~f~~~D~ 193 (284)
++|..||+|.+|.+-..... ..|.+|+.+|++++.++.+++.+++. |.. ..++++. .|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la--~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFA--RTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHH--hcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH
Confidence 58999999988765333222 36889999999999999877654331 210 0123332 222
Q ss_pred ccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061 194 MQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLV 238 (284)
Q Consensus 194 ~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~ 238 (284)
....+.|+|+.+.. .+.+.|..+++++.+.++|+.+++.
T Consensus 81 ----~~~~~aDlVieav~--e~~~~k~~~~~~l~~~~~~~~il~S 119 (291)
T PRK06035 81 ----ESLSDADFIVEAVP--EKLDLKRKVFAELERNVSPETIIAS 119 (291)
T ss_pred ----HHhCCCCEEEEcCc--CcHHHHHHHHHHHHhhCCCCeEEEE
Confidence 12356899998753 2335689999999999999887653
No 268
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=97.20 E-value=0.0016 Score=60.57 Aligned_cols=104 Identities=16% Similarity=0.169 Sum_probs=68.6
Q ss_pred HHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--c
Q 036061 123 LDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--K 199 (284)
Q Consensus 123 l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--~ 199 (284)
+......++.+||.+|+|++|..++.+|+ ..|++ |+++|.+++..+.+++ +|. ..-+.....+...+.. .
T Consensus 156 l~~~~~~~g~~vlV~G~G~vG~~~~~~ak--~~G~~~vi~~~~~~~~~~~~~~----~ga-~~~i~~~~~~~~~~~~~~~ 228 (339)
T cd08239 156 LRRVGVSGRDTVLVVGAGPVGLGALMLAR--ALGAEDVIGVDPSPERLELAKA----LGA-DFVINSGQDDVQEIRELTS 228 (339)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHH--HcCCCEEEEECCCHHHHHHHHH----hCC-CEEEcCCcchHHHHHHHhC
Confidence 33445678999999999999999999999 46788 9999999988777654 452 1111111111111111 1
Q ss_pred CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 200 LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 200 ~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
...||+||-+..- ...+....+.|++||++++-.
T Consensus 229 ~~~~d~vid~~g~-------~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 229 GAGADVAIECSGN-------TAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CCCCCEEEECCCC-------HHHHHHHHHHhhcCCEEEEEc
Confidence 2369999855432 124567778899999998754
No 269
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.18 E-value=0.00084 Score=64.57 Aligned_cols=102 Identities=19% Similarity=0.226 Sum_probs=66.5
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
-++.+|+.||+|..|..++..++ ..|++|+.+|.+++..+.+.+ ..| ..+.....+..++.....++|+|+.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~--~lGa~V~v~d~~~~~~~~l~~---~~g---~~v~~~~~~~~~l~~~l~~aDvVI~ 236 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMAN--GLGATVTILDINIDRLRQLDA---EFG---GRIHTRYSNAYEIEDAVKRADLLIG 236 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHH--HCCCeEEEEECCHHHHHHHHH---hcC---ceeEeccCCHHHHHHHHccCCEEEE
Confidence 36788999999999999998888 468899999999887655433 333 1232222222223333467999997
Q ss_pred cccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 209 AALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 209 aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+..+ +.. .+. -+-++..+.|+||++++--.
T Consensus 237 a~~~~g~~-~p~-lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 237 AVLIPGAK-APK-LVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred ccccCCCC-CCc-CcCHHHHhcCCCCCEEEEEe
Confidence 7644 221 111 13466677899999877644
No 270
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.17 E-value=0.0041 Score=57.44 Aligned_cols=98 Identities=20% Similarity=0.251 Sum_probs=66.5
Q ss_pred CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-------CCCC--------CCeEEEEeccccc
Q 036061 132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD-------IEFE--------KRMKFVTCDIMQV 196 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-------G~l~--------~~I~f~~~D~~~~ 196 (284)
++|.+||+|.+|.+-..... ..|.+|+.+|++++.++.+.+.+.+. |.+. .++++. .|.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la--~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~--- 78 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCA--LAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL--- 78 (292)
T ss_pred CEEEEECCcHHHHHHHHHHH--HCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH---
Confidence 68999999988765332222 36889999999999998876544321 3111 234442 232
Q ss_pred cccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061 197 KEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLV 238 (284)
Q Consensus 197 ~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~ 238 (284)
....+.|+|+.+.. .+.+-|..+++.+...++|+.+++.
T Consensus 79 -~~~~~aD~Vieavp--e~~~~k~~~~~~l~~~~~~~~ii~s 117 (292)
T PRK07530 79 -EDLADCDLVIEAAT--EDETVKRKIFAQLCPVLKPEAILAT 117 (292)
T ss_pred -HHhcCCCEEEEcCc--CCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 12457899997643 2345688999999999999988764
No 271
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.00024 Score=60.75 Aligned_cols=130 Identities=15% Similarity=0.212 Sum_probs=86.3
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-CCCCeEEEEeccc-ccc-ccCCCccE
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE-FEKRMKFVTCDIM-QVK-EKLGEYDC 205 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~-l~~~I~f~~~D~~-~~~-~~~~~fD~ 205 (284)
-.+++||++|.|-.+++++++|. ..+...|.-.|-++++++--++.....-. --+++....-+.- +.. .....||+
T Consensus 28 ~rg~~ilelgggft~laglmia~-~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDi 106 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIAC-KAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDI 106 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheee-ecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccE
Confidence 45689999999988999999998 67889999999999999988887755410 0122222111110 011 12236999
Q ss_pred EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec---CccccccCccCCCccCCCcEEEE
Q 036061 206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA---KGARAFLYPVVEKHDLLDFELLS 264 (284)
Q Consensus 206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~---~glr~~lYp~v~~~dl~gfe~~~ 264 (284)
|+.+--+.. .+-++.+.+.|+++|+|.|.-++-++ +.+..|+ +...-.||.++.
T Consensus 107 IlaADClFf-dE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~----de~~~~gf~v~l 163 (201)
T KOG3201|consen 107 ILAADCLFF-DEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFL----DEVGTVGFTVCL 163 (201)
T ss_pred EEeccchhH-HHHHHHHHHHHHHHhCcccceeEecCcccchHHHHH----HHHHhceeEEEe
Confidence 986543322 47788999999999999998777664 3344455 222235666654
No 272
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=97.13 E-value=0.0017 Score=61.69 Aligned_cols=101 Identities=20% Similarity=0.207 Sum_probs=67.8
Q ss_pred cCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc--CCC
Q 036061 126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK--LGE 202 (284)
Q Consensus 126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~--~~~ 202 (284)
....++++||..|+|++|..++.+|+ ..|+ +|+++|.+++..+.+++ +|. ..-+.....|..+.... .+.
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak--~~G~~~Vi~~~~~~~r~~~a~~----~Ga-~~~i~~~~~~~~~~i~~~~~~g 259 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAV--AAGASQVVAVDLNEDKLALARE----LGA-TATVNAGDPNAVEQVRELTGGG 259 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHH--HcCCCcEEEEcCCHHHHHHHHH----cCC-ceEeCCCchhHHHHHHHHhCCC
Confidence 34678899999999999999999999 4678 69999999998887765 562 11111111121111111 125
Q ss_pred ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+|+||-+..- ...++...+.+++||+++.-.
T Consensus 260 ~d~vid~~G~-------~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 260 VDYAFEMAGS-------VPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred CCEEEECCCC-------hHHHHHHHHHHhcCCEEEEEc
Confidence 8999855331 135677788999999988754
No 273
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=97.09 E-value=0.0018 Score=60.07 Aligned_cols=88 Identities=16% Similarity=0.171 Sum_probs=61.6
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~ 207 (284)
.++++||.+|+|++|+.++.+|+ ..|++ |..+|.+++.++.|.+. +. + |..+. ....||+||
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak--~~G~~~v~~~~~~~~rl~~a~~~----~~----i-----~~~~~--~~~g~Dvvi 205 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTK--AAGGSPPAVWETNPRRRDGATGY----EV----L-----DPEKD--PRRDYRAIY 205 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHH--HcCCceEEEeCCCHHHHHhhhhc----cc----c-----Chhhc--cCCCCCEEE
Confidence 45789999999999999999998 35776 67789998877666542 21 1 11110 123699998
Q ss_pred ecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
-+... ...++...+.|++||++++-.
T Consensus 206 d~~G~-------~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 206 DASGD-------PSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred ECCCC-------HHHHHHHHHhhhcCcEEEEEe
Confidence 65442 235678888999999998754
No 274
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.07 E-value=0.0025 Score=61.55 Aligned_cols=106 Identities=19% Similarity=0.234 Sum_probs=78.7
Q ss_pred CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCC-CeEEEEeccccccc-cCCCccEEE
Q 036061 130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEK-RMKFVTCDIMQVKE-KLGEYDCIF 207 (284)
Q Consensus 130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~-~I~f~~~D~~~~~~-~~~~fD~V~ 207 (284)
.+-+|||.=||+ |+=++..|+......+|+.=|+|++|++..+++++..| ++. ++++.+.|+..+.. ....||+|=
T Consensus 49 ~~~~~lDalaas-GvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~-~~~~~~~v~~~DAn~ll~~~~~~fD~ID 126 (377)
T PF02005_consen 49 GPIRVLDALAAS-GVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNG-LEDERIEVSNMDANVLLYSRQERFDVID 126 (377)
T ss_dssp S-EEEEETT-TT-SHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT--SGCCEEEEES-HHHHHCHSTT-EEEEE
T ss_pred CCceEEeccccc-cHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcc-ccCceEEEehhhHHHHhhhccccCCEEE
Confidence 456999999986 78889998832334689999999999999999999999 677 79999999977653 234699998
Q ss_pred ecccccCChHHHHHHHHHHHhhcCCCcEEEEEecC
Q 036061 208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAK 242 (284)
Q Consensus 208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~ 242 (284)
++.+ .-...+++...+.++.||.|.+...+
T Consensus 127 lDPf-----GSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 127 LDPF-----GSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp E--S-----S--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred eCCC-----CCccHhHHHHHHHhhcCCEEEEeccc
Confidence 8887 44567999999999999999997643
No 275
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=97.06 E-value=0.0028 Score=59.63 Aligned_cols=102 Identities=16% Similarity=0.139 Sum_probs=66.3
Q ss_pred hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe---ccccccc---
Q 036061 125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC---DIMQVKE--- 198 (284)
Q Consensus 125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~---D~~~~~~--- 198 (284)
+....++.+|+..|+|++|..++.+|+ ..|++|+++|.+++..+.+++ +|. ..-+..... |..+...
T Consensus 161 ~~~~~~g~~VlV~G~G~vG~~a~~~a~--~~G~~vi~~~~~~~~~~~~~~----~Ga-~~~i~~~~~~~~~~~~~~~~~t 233 (349)
T TIGR03201 161 QAGLKKGDLVIVIGAGGVGGYMVQTAK--AMGAAVVAIDIDPEKLEMMKG----FGA-DLTLNPKDKSAREVKKLIKAFA 233 (349)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHH--HcCCeEEEEcCCHHHHHHHHH----hCC-ceEecCccccHHHHHHHHHhhc
Confidence 345678899999999999999999999 357899999999998877755 452 211221111 1111111
Q ss_pred cCCCcc----EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 199 KLGEYD----CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 199 ~~~~fD----~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
....+| +||.+..- ...++...+.+++||++++-.
T Consensus 234 ~~~g~d~~~d~v~d~~g~-------~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 234 KARGLRSTGWKIFECSGS-------KPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred ccCCCCCCcCEEEECCCC-------hHHHHHHHHHHhcCCeEEEEC
Confidence 112354 67644331 235566778899999998754
No 276
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.06 E-value=0.0096 Score=53.42 Aligned_cols=154 Identities=17% Similarity=0.179 Sum_probs=93.1
Q ss_pred hhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEec
Q 036061 113 VKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCD 192 (284)
Q Consensus 113 ~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D 192 (284)
-+|.-.-+..+....+.++.+||.+|+.+ |.|.-.++.-..+++.|.+++.||...+---.++++- .+|-=+-+|
T Consensus 56 SKLaAai~~Gl~~~~ik~gskVLYLGAas-GTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R----~NIiPIl~D 130 (229)
T PF01269_consen 56 SKLAAAILKGLENIPIKPGSKVLYLGAAS-GTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR----PNIIPILED 130 (229)
T ss_dssp -HHHHHHHTT-S--S--TT-EEEEETTTT-SHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS----TTEEEEES-
T ss_pred hHHHHHHHcCccccCCCCCCEEEEecccC-CCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC----Cceeeeecc
Confidence 34444444444445668999999999975 7888888875567899999999998766666666554 367778899
Q ss_pred ccccccc----CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe-cCccccccCccCCCc--------cC--
Q 036061 193 IMQVKEK----LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS-AKGARAFLYPVVEKH--------DL-- 257 (284)
Q Consensus 193 ~~~~~~~----~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~-~~glr~~lYp~v~~~--------dl-- 257 (284)
+.. |.. ....|+||.+-.- +.+-.=++.+....||+||.+++.- +... .-..+|+ .|
T Consensus 131 Ar~-P~~Y~~lv~~VDvI~~DVaQ---p~Qa~I~~~Na~~fLk~gG~~~i~iKa~si----D~t~~p~~vf~~e~~~L~~ 202 (229)
T PF01269_consen 131 ARH-PEKYRMLVEMVDVIFQDVAQ---PDQARIAALNARHFLKPGGHLIISIKARSI----DSTADPEEVFAEEVKKLKE 202 (229)
T ss_dssp TTS-GGGGTTTS--EEEEEEE-SS---TTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-----SSSSHHHHHHHHHHHHHC
T ss_pred CCC-hHHhhcccccccEEEecCCC---hHHHHHHHHHHHhhccCCcEEEEEEecCcc----cCcCCHHHHHHHHHHHHHH
Confidence 875 332 2468999976442 2444445667778999999888754 1111 1111221 23
Q ss_pred CCcEEEEEec--CCcceeeeEEEEe
Q 036061 258 LDFELLSVFH--PTNEVINSVVLVR 280 (284)
Q Consensus 258 ~gfe~~~~~h--P~~~v~nsvi~~r 280 (284)
.||+++...+ |..+ -..+|++|
T Consensus 203 ~~~~~~e~i~LePy~~-dH~~vv~~ 226 (229)
T PF01269_consen 203 EGFKPLEQITLEPYER-DHAMVVGR 226 (229)
T ss_dssp TTCEEEEEEE-TTTST-TEEEEEEE
T ss_pred cCCChheEeccCCCCC-CcEEEEEE
Confidence 4799988865 6543 23345544
No 277
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.03 E-value=0.0045 Score=61.02 Aligned_cols=126 Identities=15% Similarity=0.261 Sum_probs=84.4
Q ss_pred ccCCCcchhhhhhHHHHHHHHhcCCCCCC-EEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCC
Q 036061 104 NLFPYYGNYVKLANLEYRILDENGVVNPK-KVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEF 182 (284)
Q Consensus 104 ~~fpy~~ny~~l~~~E~~~l~~~~~~~~~-~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l 182 (284)
..|-+|..|..+...-...+ .+-. +++.+|||. +.+.+-.....--.||++|+|+-+++.....-++.
T Consensus 26 ~~~ewY~~~l~l~~~i~~~~-----~p~~~~~l~lGCGN---S~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~--- 94 (482)
T KOG2352|consen 26 DPFEWYGALLSLSGSIMKYL-----SPSDFKILQLGCGN---SELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE--- 94 (482)
T ss_pred ChHHHHHHHHHHHHHHHHhh-----chhhceeEeecCCC---CHHHHHHHhcCCCCceeccccHHHHHHHHhccccC---
Confidence 44566666666554433222 3444 999999985 34444331112245999999999999887765432
Q ss_pred CCCeEEEEeccccccccCCCccEEEe----cccc-c----CChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 183 EKRMKFVTCDIMQVKEKLGEYDCIFL----AALV-G----MSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 183 ~~~I~f~~~D~~~~~~~~~~fD~V~~----aa~v-~----~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
...+++...|......+..+||+|+. +++. + +....+.+.+.+++|+++|||+++.-+
T Consensus 95 ~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 95 RPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred CcceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 35789999999988888888999973 3332 1 112345678899999999999866543
No 278
>PLN02740 Alcohol dehydrogenase-like
Probab=97.01 E-value=0.004 Score=59.46 Aligned_cols=101 Identities=17% Similarity=0.178 Sum_probs=67.2
Q ss_pred cCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE--eccccccccC--
Q 036061 126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVT--CDIMQVKEKL-- 200 (284)
Q Consensus 126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~--~D~~~~~~~~-- 200 (284)
....++++||.+|+|++|..++.+|+ ..|+ +|+++|.+++..+.|++ +|. ..-+.... .|..+.....
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak--~~G~~~Vi~~~~~~~r~~~a~~----~Ga-~~~i~~~~~~~~~~~~v~~~~~ 266 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGAR--ARGASKIIGVDINPEKFEKGKE----MGI-TDFINPKDSDKPVHERIREMTG 266 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHH--HCCCCcEEEEcCChHHHHHHHH----cCC-cEEEecccccchHHHHHHHHhC
Confidence 34678899999999999999999999 4677 69999999998888865 562 21111111 0111111111
Q ss_pred CCccEEEecccccCChHHHHHHHHHHHhhcCCC-cEEEEEe
Q 036061 201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDG-GVLLVRS 240 (284)
Q Consensus 201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pG-g~lv~r~ 240 (284)
+.+|+||-+... ...++...+.+++| |++++-.
T Consensus 267 ~g~dvvid~~G~-------~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 267 GGVDYSFECAGN-------VEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred CCCCEEEECCCC-------hHHHHHHHHhhhcCCCEEEEEc
Confidence 259999865442 13566777788897 8877654
No 279
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=97.00 E-value=0.0034 Score=58.45 Aligned_cols=165 Identities=24% Similarity=0.285 Sum_probs=114.2
Q ss_pred CCCcccccccCCCcchhhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHH
Q 036061 96 TPQPLNNLNLFPYYGNYVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQI 175 (284)
Q Consensus 96 ~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~ 175 (284)
+-.-+-....|.|-+-|-.+.- .....|++||.||.|-+|+--+. ++ |..=..++-+|||...++.+++.
T Consensus 95 gviqlte~de~~Yqemi~~l~l--------~s~~npkkvlVVgggDggvlrev-ik-H~~ve~i~~~eiD~~Vie~sk~y 164 (337)
T KOG1562|consen 95 GVIQLTERDEFAYQEMIAHLAL--------CSHPNPKKVLVVGGGDGGVLREV-IK-HKSVENILLCEIDENVIESSKQY 164 (337)
T ss_pred CeeeCCccccccceeeeecccc--------ccCCCCCeEEEEecCCccceeee-ec-cccccceeeehhhHHHHHHHHHH
Confidence 3333344467888666655543 13478999999999988875443 33 33445689999999999999999
Q ss_pred HHhc--CCCCCCeEEEEeccccccccC--CCccEEEeccc--ccCChHH--HHHHHHHHHhhcCCCcEEEEEec------
Q 036061 176 VSSD--IEFEKRMKFVTCDIMQVKEKL--GEYDCIFLAAL--VGMSKEE--KVKIIKHIRKYMKDGGVLLVRSA------ 241 (284)
Q Consensus 176 ~~~~--G~l~~~I~f~~~D~~~~~~~~--~~fD~V~~aa~--v~~~~~~--k~~il~~l~~~l~pGg~lv~r~~------ 241 (284)
...+ |.-..+|.++-||+..+.... +.||+|++++. +| +... .+.+++.+.+.||+||++++...
T Consensus 165 ~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvg-pa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~ 243 (337)
T KOG1562|consen 165 LPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVG-PACALFQKPYFGLVLDALKGDGVVCTQGECMWLHL 243 (337)
T ss_pred hHHHhcccCCCceEEEeccHHHHHHHhccCCceEEEEecCCccc-hHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHH
Confidence 8753 434689999999998776655 47999998863 32 2222 36789999999999999988652
Q ss_pred ---Cccccc--------cCccCCCc----cCCCcEEEEEecCCcc
Q 036061 242 ---KGARAF--------LYPVVEKH----DLLDFELLSVFHPTNE 271 (284)
Q Consensus 242 ---~glr~~--------lYp~v~~~----dl~gfe~~~~~hP~~~ 271 (284)
+-+|+| .||..+.. ..-||..+....|.++
T Consensus 244 ~~i~e~r~~~~~~f~~t~ya~ttvPTypsg~igf~l~s~~~~~~~ 288 (337)
T KOG1562|consen 244 DYIKEGRSFCYVIFDLTAYAITTVPTYPSGRIGFMLCSKLKPDGK 288 (337)
T ss_pred HHHHHHHHhHHHhcCccceeeecCCCCccceEEEEEecccCCCCC
Confidence 223443 34433321 2358999987767665
No 280
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=96.98 E-value=0.0028 Score=59.75 Aligned_cols=100 Identities=19% Similarity=0.104 Sum_probs=66.8
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc---ccCCC
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK---EKLGE 202 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~---~~~~~ 202 (284)
...++++||..|+|++|..++.+|+ ..|+ +|+++|.+++..+.+++ +|. ..-+.....|..+.. ..-..
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak--~~G~~~Vi~~~~~~~~~~~~~~----~Ga-~~~i~~~~~~~~~~i~~~~~~~g 245 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAA--LAGASKIIAVDIDDRKLEWARE----FGA-THTVNSSGTDPVEAIRALTGGFG 245 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHH--HcCCCeEEEEcCCHHHHHHHHH----cCC-ceEEcCCCcCHHHHHHHHhCCCC
Confidence 4578899999999999999999999 4677 49999999998777754 562 111122112221111 11125
Q ss_pred ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+|+|+-+..- ...++...+.+++||++++-.
T Consensus 246 ~d~vid~~g~-------~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 246 ADVVIDAVGR-------PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CCEEEECCCC-------HHHHHHHHHHhccCCEEEEEC
Confidence 8999854331 135667788999999998754
No 281
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.98 E-value=0.006 Score=56.28 Aligned_cols=100 Identities=17% Similarity=0.255 Sum_probs=67.0
Q ss_pred CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-------CCCC---------CCeEEEEecccc
Q 036061 132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD-------IEFE---------KRMKFVTCDIMQ 195 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-------G~l~---------~~I~f~~~D~~~ 195 (284)
++|..||+|.+|.+...... ..|.+|+.+|+|++.++.+++.+.+. +.+. .++++ +.|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la--~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~ 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTA--FHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAE 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHH--hcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHH
Confidence 58999999987755333222 36889999999999999988764321 1011 24443 233322
Q ss_pred ccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061 196 VKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR 239 (284)
Q Consensus 196 ~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r 239 (284)
.....|+|+.+.. .+.+-|..+++++.+.++++.+|+..
T Consensus 81 ---a~~~aDlVieavp--e~~~~k~~~~~~l~~~~~~~~ii~sn 119 (287)
T PRK08293 81 ---AVKDADLVIEAVP--EDPEIKGDFYEELAKVAPEKTIFATN 119 (287)
T ss_pred ---HhcCCCEEEEecc--CCHHHHHHHHHHHHhhCCCCCEEEEC
Confidence 2356799997643 23367899999999999888877543
No 282
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.98 E-value=0.004 Score=57.44 Aligned_cols=100 Identities=18% Similarity=0.193 Sum_probs=66.8
Q ss_pred CEEEEeccCCChhHHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCCC--------CCeEEEEecccc
Q 036061 132 KKVAFVGSGPMPLTSI-VMAKNHLKSTHFDNFDIDEAANDVARQIVSS-------DIEFE--------KRMKFVTCDIMQ 195 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai-~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~G~l~--------~~I~f~~~D~~~ 195 (284)
++|..||+|.+|.+.. .+++ .|.+|+.+|+|++.++.+++.+.. .|.+. .++++. .|..
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~---~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~- 76 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAV---SGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLK- 76 (288)
T ss_pred cEEEEECccHHHHHHHHHHHh---CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHH-
Confidence 5899999998876532 2333 688999999999999998765322 11111 123332 2322
Q ss_pred ccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 196 VKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 196 ~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
....+.|+|+.+.. .+..-|..++.++.+.++||.+++..+
T Consensus 77 --~~~~~aD~Vi~avp--e~~~~k~~~~~~l~~~~~~~~il~~~t 117 (288)
T PRK09260 77 --AAVADADLVIEAVP--EKLELKKAVFETADAHAPAECYIATNT 117 (288)
T ss_pred --HhhcCCCEEEEecc--CCHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 23456899997643 244568899999999999998776544
No 283
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=96.89 E-value=0.0034 Score=57.49 Aligned_cols=86 Identities=21% Similarity=0.351 Sum_probs=65.4
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
.....|.|+|||-. -||. ..--.|+.+|+- ..+ =+++.+|..++|.+.+..|++++
T Consensus 179 ~~~~vIaD~GCGEa-----kiA~--~~~~kV~SfDL~------------a~~-----~~V~~cDm~~vPl~d~svDvaV~ 234 (325)
T KOG3045|consen 179 PKNIVIADFGCGEA-----KIAS--SERHKVHSFDLV------------AVN-----ERVIACDMRNVPLEDESVDVAVF 234 (325)
T ss_pred cCceEEEecccchh-----hhhh--ccccceeeeeee------------cCC-----CceeeccccCCcCccCcccEEEe
Confidence 45678999999953 2443 244679999975 222 36678999999988889999876
Q ss_pred cc-cccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 209 AA-LVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 209 aa-~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
+- +.| .+-..++.+..|.|++||.+-+...
T Consensus 235 CLSLMg---tn~~df~kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 235 CLSLMG---TNLADFIKEANRILKPGGLLYIAEV 265 (325)
T ss_pred eHhhhc---ccHHHHHHHHHHHhccCceEEEEeh
Confidence 53 434 6788999999999999999988653
No 284
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=96.87 E-value=0.0068 Score=63.35 Aligned_cols=100 Identities=19% Similarity=0.133 Sum_probs=73.7
Q ss_pred CCEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-------CCCC--------CCeEEEEeccc
Q 036061 131 PKKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD-------IEFE--------KRMKFVTCDIM 194 (284)
Q Consensus 131 ~~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-------G~l~--------~~I~f~~~D~~ 194 (284)
-++|..||+|.+|-. |.++|. .|..|+-+|+++++++.+.+.+++. |.+. .+|++. .|.
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~---~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~- 409 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVD---KGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDY- 409 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHh---CCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH-
Confidence 368999999988765 344444 7999999999999999988776532 2111 345543 222
Q ss_pred cccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 195 QVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 195 ~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
..+++.|+|+-+. ..+.+-|.+++.++-++++|+++|...+
T Consensus 410 ---~~~~~aDlViEAv--~E~l~~K~~vf~~l~~~~~~~~ilasNT 450 (737)
T TIGR02441 410 ---SGFKNADMVIEAV--FEDLSLKHKVIKEVEAVVPPHCIIASNT 450 (737)
T ss_pred ---HHhccCCeehhhc--cccHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 2356789998663 3456889999999999999999988765
No 285
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=96.85 E-value=0.0088 Score=55.30 Aligned_cols=98 Identities=24% Similarity=0.280 Sum_probs=65.7
Q ss_pred CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHH-------hcCCCC--------CCeEEEEeccccc
Q 036061 132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVS-------SDIEFE--------KRMKFVTCDIMQV 196 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~-------~~G~l~--------~~I~f~~~D~~~~ 196 (284)
++|.+||+|.+|..-.... ...|.+|+.+|.+++.++.+++.++ +.|.+. .++++. .|.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l--~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~--- 78 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLA--AAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCT-TNL--- 78 (295)
T ss_pred CEEEEECCCHHHHHHHHHH--HhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEee-CCH---
Confidence 6899999998875532221 1368999999999999987766543 223111 123332 222
Q ss_pred cccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061 197 KEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLV 238 (284)
Q Consensus 197 ~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~ 238 (284)
......|+|+.+.. .+.+.|..++.++.+.++|+.+|+.
T Consensus 79 -~~~~~aD~Vieav~--e~~~~k~~v~~~l~~~~~~~~il~s 117 (295)
T PLN02545 79 -EELRDADFIIEAIV--ESEDLKKKLFSELDRICKPSAILAS 117 (295)
T ss_pred -HHhCCCCEEEEcCc--cCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 12356899997643 3458899999999999999987764
No 286
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=96.84 E-value=0.006 Score=57.90 Aligned_cols=98 Identities=15% Similarity=0.183 Sum_probs=63.5
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF 207 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~ 207 (284)
..++++||..|+|++|..++.+|+ ..|++|+++|.+++... +.++++|. +. .+...+...+....+.+|+||
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak--~~Ga~vi~~~~~~~~~~---~~~~~~Ga--~~-vi~~~~~~~~~~~~~~~D~vi 252 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGK--AFGLKVTVISSSSNKED---EAINRLGA--DS-FLVSTDPEKMKAAIGTMDYII 252 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCcchhh---hHHHhCCC--cE-EEcCCCHHHHHhhcCCCCEEE
Confidence 357899999999999999999999 46889999988876432 22335662 11 111111111111123589998
Q ss_pred ecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
-+... ...+++..+.+++||+++.-.
T Consensus 253 d~~g~-------~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 253 DTVSA-------VHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred ECCCC-------HHHHHHHHHHhcCCcEEEEeC
Confidence 54331 125677888999999988654
No 287
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=96.77 E-value=0.007 Score=56.64 Aligned_cols=100 Identities=16% Similarity=0.134 Sum_probs=65.4
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--cCCCc
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--KLGEY 203 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--~~~~f 203 (284)
...++++||..|+|++|..++.+|+ ..|++ |+++|.+++..+.+++ +|. ..-+.....+..++.. .-..+
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~--~~G~~~v~~~~~~~~~~~~~~~----~Ga-~~~i~~~~~~~~~~~~~~~~~~~ 229 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAV--ALGAKSVTAIDINSEKLALAKS----LGA-MQTFNSREMSAPQIQSVLRELRF 229 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHH--HcCCCeEEEECCCHHHHHHHHH----cCC-ceEecCcccCHHHHHHHhcCCCC
Confidence 4567899999999999999999999 46786 7899999998777644 452 1111111111111111 11257
Q ss_pred c-EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 204 D-CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 204 D-~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
| +||-+... ...+....+.|++||.+++-.
T Consensus 230 d~~v~d~~G~-------~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 230 DQLILETAGV-------PQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred CeEEEECCCC-------HHHHHHHHHHhhcCCEEEEEc
Confidence 8 66543331 236778889999999988764
No 288
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.74 E-value=0.0095 Score=58.40 Aligned_cols=109 Identities=17% Similarity=0.085 Sum_probs=71.1
Q ss_pred cchhhhhhHHHHHHHHhc-CC-CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCe
Q 036061 109 YGNYVKLANLEYRILDEN-GV-VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRM 186 (284)
Q Consensus 109 ~~ny~~l~~~E~~~l~~~-~~-~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I 186 (284)
|+|-....+--+..+.+. .. ..+++|+.+|+|++|......++ ..|++|+.+|+|+.....|.. .|.
T Consensus 188 ~dn~~gt~~s~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr--~~Ga~ViV~d~dp~ra~~A~~----~G~----- 256 (425)
T PRK05476 188 FDNRYGTGESLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLR--GLGARVIVTEVDPICALQAAM----DGF----- 256 (425)
T ss_pred ccccHHHHhhhHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHH--hCCCEEEEEcCCchhhHHHHh----cCC-----
Confidence 344444444445554444 32 47899999999999988887777 578999999999976544432 352
Q ss_pred EEEEeccccccccCCCccEEEecccccCChHHHHHHHH-HHHhhcCCCcEEEEEe
Q 036061 187 KFVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIK-HIRKYMKDGGVLLVRS 240 (284)
Q Consensus 187 ~f~~~D~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~-~l~~~l~pGg~lv~r~ 240 (284)
++ .+..+ ....+|+|+.+.. .+ .++. ...+.||+|++++.-.
T Consensus 257 ~v--~~l~e---al~~aDVVI~aTG------~~-~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 257 RV--MTMEE---AAELGDIFVTATG------NK-DVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred Ee--cCHHH---HHhCCCEEEECCC------CH-HHHHHHHHhcCCCCCEEEEcC
Confidence 21 12222 2346899986532 22 3554 6788999999887654
No 289
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=96.73 E-value=0.014 Score=55.11 Aligned_cols=97 Identities=15% Similarity=0.167 Sum_probs=64.4
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
.++.+|+..|+|++|..++.+|+ ..|++|+.++.+++..+.+.+ ++|. +. .+...+...+......+|+||-
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak--~~G~~vi~~~~~~~~~~~~~~---~~Ga--~~-~i~~~~~~~~~~~~~~~D~vid 250 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAK--AMGHHVTVISSSDKKREEALE---HLGA--DD-YLVSSDAAEMQEAADSLDYIID 250 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHH--HCCCeEEEEeCCHHHHHHHHH---hcCC--cE-EecCCChHHHHHhcCCCcEEEE
Confidence 57899999999999999999999 468889999988876544433 5673 21 1111111111111235899985
Q ss_pred cccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+... ...++...+.+++||+++.-.
T Consensus 251 ~~g~-------~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 251 TVPV-------FHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred CCCc-------hHHHHHHHHHhccCCEEEEEC
Confidence 4331 135667788999999988754
No 290
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=96.73 E-value=0.0044 Score=62.02 Aligned_cols=102 Identities=20% Similarity=0.214 Sum_probs=69.7
Q ss_pred CCCCEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCCC--------CCeEEEEec
Q 036061 129 VNPKKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSS-------DIEFE--------KRMKFVTCD 192 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~G~l~--------~~I~f~~~D 192 (284)
.+-++|..||+|.+|.. |..+++ .|..|+.+|+++++++.+++.+++ .|.+. .++++. .|
T Consensus 3 ~~~~kV~VIGaG~MG~gIA~~la~---aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~ 78 (503)
T TIGR02279 3 INVVTVAVIGAGAMGAGIAQVAAS---AGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TD 78 (503)
T ss_pred CCccEEEEECcCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CC
Confidence 34578999999988744 233444 789999999999999988664432 23111 234442 23
Q ss_pred cccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 193 IMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 193 ~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
. ....+.|+||.+. ..+.+-|..++..+.+.++|+.+|...+
T Consensus 79 ~----~~l~~aDlVIEav--~E~~~vK~~vf~~l~~~~~~~~IlasnT 120 (503)
T TIGR02279 79 L----HALADAGLVIEAI--VENLEVKKALFAQLEELCPADTIIASNT 120 (503)
T ss_pred H----HHhCCCCEEEEcC--cCcHHHHHHHHHHHHhhCCCCeEEEECC
Confidence 2 2345789999763 2345789999999999988888776544
No 291
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=96.71 E-value=0.01 Score=56.11 Aligned_cols=100 Identities=13% Similarity=0.028 Sum_probs=67.3
Q ss_pred CCCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe-cccccccc--CCC
Q 036061 127 GVVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC-DIMQVKEK--LGE 202 (284)
Q Consensus 127 ~~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~-D~~~~~~~--~~~ 202 (284)
...++++||..|+ |++|..++.+|+ ..|++|++++.+++..+.+++ .+|. ..-+..... |..+.... .+.
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk--~~G~~Vi~~~~~~~k~~~~~~---~lGa-~~vi~~~~~~~~~~~i~~~~~~g 228 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAK--LHGCYVVGSAGSSQKVDLLKN---KLGF-DEAFNYKEEPDLDAALKRYFPEG 228 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHH--HcCCEEEEEcCCHHHHHHHHH---hcCC-CEEEECCCcccHHHHHHHHCCCC
Confidence 4578899999998 899999999999 468999999999887666653 4562 221222111 22111111 136
Q ss_pred ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+|+||-+.. . ..+....+.+++||++++-.
T Consensus 229 vD~v~d~vG-----~---~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 229 IDIYFDNVG-----G---DMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred cEEEEECCC-----H---HHHHHHHHHhccCCEEEEEC
Confidence 999984322 1 36678889999999998643
No 292
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=96.70 E-value=0.011 Score=61.41 Aligned_cols=101 Identities=14% Similarity=0.058 Sum_probs=72.8
Q ss_pred CCEEEEeccCCChhHH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-------CCCC--------CCeEEEEeccc
Q 036061 131 PKKVAFVGSGPMPLTS-IVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD-------IEFE--------KRMKFVTCDIM 194 (284)
Q Consensus 131 ~~~VL~IGsG~lp~ta-i~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-------G~l~--------~~I~f~~~D~~ 194 (284)
-++|..||+|.+|-.- .++|. ..|..|+.+|+|+++++.+++.+++. |.+. ++|++. .|
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~--~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~-- 383 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTAT--KAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TD-- 383 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHH--HcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CC--
Confidence 4789999999877542 22341 37999999999999999987766431 2111 345554 22
Q ss_pred cccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 195 QVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 195 ~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+ ....+.|+|+-+. ..+.+-|.+++.++-++++|+.+|...+
T Consensus 384 -~-~~~~~aDlViEav--~E~~~~K~~v~~~le~~~~~~~ilasnT 425 (708)
T PRK11154 384 -Y-RGFKHADVVIEAV--FEDLALKQQMVAEVEQNCAPHTIFASNT 425 (708)
T ss_pred -h-HHhccCCEEeecc--cccHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 1 2356789999763 3456889999999999999999987765
No 293
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=96.68 E-value=0.016 Score=55.00 Aligned_cols=99 Identities=19% Similarity=0.237 Sum_probs=66.4
Q ss_pred cCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE--ecc----ccccc
Q 036061 126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVT--CDI----MQVKE 198 (284)
Q Consensus 126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~--~D~----~~~~~ 198 (284)
....++++||..|+|++|..++.+|+ ..|+ +|+++|.+++..+.|++ +|. ..-+.... .+. .++..
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak--~~G~~~Vi~~~~~~~~~~~a~~----~Ga-~~~i~~~~~~~~~~~~v~~~~~ 253 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGAR--MAKASRIIAIDINPAKFELAKK----LGA-TDCVNPNDYDKPIQEVIVEITD 253 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHH--HcCCCeEEEEcCCHHHHHHHHH----hCC-CeEEcccccchhHHHHHHHHhC
Confidence 34578899999999999999999999 4677 79999999998887755 452 21122111 111 11111
Q ss_pred cCCCccEEEecccccCChHHHHHHHHHHHhhcCCC-cEEEEEe
Q 036061 199 KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDG-GVLLVRS 240 (284)
Q Consensus 199 ~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pG-g~lv~r~ 240 (284)
+.+|+|+-+... ...+....+.+++| |+++.-.
T Consensus 254 --~g~d~vid~~G~-------~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 254 --GGVDYSFECIGN-------VNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred --CCCCEEEECCCC-------HHHHHHHHHHhhcCCCeEEEEe
Confidence 268999865331 23566777888886 8877654
No 294
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.68 E-value=0.013 Score=54.45 Aligned_cols=100 Identities=15% Similarity=0.182 Sum_probs=63.3
Q ss_pred CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-cCCC-C--------CCeEEEEeccccccccC
Q 036061 131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSS-DIEF-E--------KRMKFVTCDIMQVKEKL 200 (284)
Q Consensus 131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-~G~l-~--------~~I~f~~~D~~~~~~~~ 200 (284)
-++|.+||+|.+|.+-..... ..|.+|+.+|.+++.++.+++.+.+ .|.. . .++++ +.|.. ...
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~--~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~---~~~ 77 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFA--RKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLA---AAV 77 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHH--hCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHH---HHh
Confidence 368999999988765332222 3688999999999999988875332 1210 0 12332 22221 223
Q ss_pred CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061 201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLV 238 (284)
Q Consensus 201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~ 238 (284)
++.|+||.+..- +...|..++..+.+.++++.+++.
T Consensus 78 ~~aDlVi~av~~--~~~~~~~v~~~l~~~~~~~~ii~s 113 (311)
T PRK06130 78 SGADLVIEAVPE--KLELKRDVFARLDGLCDPDTIFAT 113 (311)
T ss_pred ccCCEEEEeccC--cHHHHHHHHHHHHHhCCCCcEEEE
Confidence 568999986431 224588899999988777765543
No 295
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=96.68 E-value=0.012 Score=54.74 Aligned_cols=101 Identities=19% Similarity=0.145 Sum_probs=68.1
Q ss_pred cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061 126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC 205 (284)
Q Consensus 126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~ 205 (284)
....++++||..|+|++|..++.+|+ ..|++|+.++.+++..+.+++ +| ...-+.....|..+....++.+|+
T Consensus 159 ~~~~~~~~vlV~g~g~iG~~~~~~a~--~~G~~vi~~~~~~~~~~~~~~----~g-~~~~i~~~~~~~~~~~~~~~~~d~ 231 (333)
T cd08296 159 SGAKPGDLVAVQGIGGLGHLAVQYAA--KMGFRTVAISRGSDKADLARK----LG-AHHYIDTSKEDVAEALQELGGAKL 231 (333)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHH--HCCCeEEEEeCChHHHHHHHH----cC-CcEEecCCCccHHHHHHhcCCCCE
Confidence 35577899999999999999999999 468899999999887776644 55 211111111122111122346899
Q ss_pred EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
|+-.... ...++...+.++++|.++.-.
T Consensus 232 vi~~~g~-------~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 232 ILATAPN-------AKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred EEECCCc-------hHHHHHHHHHcccCCEEEEEe
Confidence 8843211 236778899999999988754
No 296
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=96.67 E-value=0.0096 Score=57.02 Aligned_cols=96 Identities=16% Similarity=0.163 Sum_probs=63.2
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHH-HHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAA-NDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~a-i~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~ 207 (284)
.++++|+..|+|++|..++.+|+ ..|++|+++|.+++. .+.+ +++|. . . .+...+...+....+.+|+|+
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak--~~Ga~Vi~~~~~~~~~~~~a----~~lGa-~-~-~i~~~~~~~v~~~~~~~D~vi 247 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGK--AFGLRVTVISRSSEKEREAI----DRLGA-D-S-FLVTTDSQKMKEAVGTMDFII 247 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHH--HcCCeEEEEeCChHHhHHHH----HhCCC-c-E-EEcCcCHHHHHHhhCCCcEEE
Confidence 47899999999999999999999 468899999988654 3333 45662 1 1 111111111111123589998
Q ss_pred ecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
-+... ...+....+.+++||.++.-.
T Consensus 248 d~~G~-------~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 248 DTVSA-------EHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred ECCCc-------HHHHHHHHHhhcCCCEEEEEc
Confidence 65432 135677788999999998754
No 297
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.66 E-value=0.011 Score=57.51 Aligned_cols=89 Identities=17% Similarity=0.082 Sum_probs=61.7
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
..+++|+.+|+|++|......++ ..|++|+.+|+||.....|+ ..|. ++. +..+ .....|+|+.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak--~~Ga~ViV~d~dp~r~~~A~----~~G~-----~v~--~lee---al~~aDVVIt 256 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRAR--GMGARVIVTEVDPIRALEAA----MDGF-----RVM--TMEE---AAKIGDIFIT 256 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHh--hCcCEEEEEeCChhhHHHHH----hcCC-----EeC--CHHH---HHhcCCEEEE
Confidence 67899999999999999888887 57899999999997543333 3452 221 2222 2346799886
Q ss_pred cccccCChHHHHHHHH-HHHhhcCCCcEEEEEe
Q 036061 209 AALVGMSKEEKVKIIK-HIRKYMKDGGVLLVRS 240 (284)
Q Consensus 209 aa~v~~~~~~k~~il~-~l~~~l~pGg~lv~r~ 240 (284)
+.. . ..++. .....||+|++++.-.
T Consensus 257 aTG------~-~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 257 ATG------N-KDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred CCC------C-HHHHHHHHHhcCCCCcEEEEEC
Confidence 432 2 33444 4778999999887654
No 298
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=96.65 E-value=0.0047 Score=61.86 Aligned_cols=101 Identities=18% Similarity=0.217 Sum_probs=70.5
Q ss_pred CCCEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCC--------CCCeEEEEecc
Q 036061 130 NPKKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSS-------DIEF--------EKRMKFVTCDI 193 (284)
Q Consensus 130 ~~~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~G~l--------~~~I~f~~~D~ 193 (284)
+-++|..||+|.+|.. |..+|+ .|..|+.+|+++++++.+.+.+++ .|.+ .+++++. .|.
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~---aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~ 81 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQ---AGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EAL 81 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH
Confidence 4478999999988753 334454 799999999999999998666542 2211 1235543 232
Q ss_pred ccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 194 MQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 194 ~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
. +..+.|+||.+. ..+.+-|..++..+.+.++|+.+|...+
T Consensus 82 ~----~~~~aDlViEav--~E~~~vK~~vf~~l~~~~~~~ailasnt 122 (507)
T PRK08268 82 A----DLADCDLVVEAI--VERLDVKQALFAQLEAIVSPDCILATNT 122 (507)
T ss_pred H----HhCCCCEEEEcC--cccHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 2 345789999763 3455789999999999989988886543
No 299
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=96.63 E-value=0.0028 Score=58.59 Aligned_cols=96 Identities=15% Similarity=0.160 Sum_probs=74.6
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
..+.-++++|||-+-++ - ..|.+.+.+.|++..-+..|++ ..+ .....+|+..++.....||..+.
T Consensus 44 ~~gsv~~d~gCGngky~----~--~~p~~~~ig~D~c~~l~~~ak~---~~~-----~~~~~ad~l~~p~~~~s~d~~ls 109 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYL----G--VNPLCLIIGCDLCTGLLGGAKR---SGG-----DNVCRADALKLPFREESFDAALS 109 (293)
T ss_pred CCcceeeecccCCcccC----c--CCCcceeeecchhhhhcccccc---CCC-----ceeehhhhhcCCCCCCccccchh
Confidence 45889999999964332 1 2478899999999988887776 222 16677999998887778999987
Q ss_pred cccc-cC-ChHHHHHHHHHHHhhcCCCcEEEE
Q 036061 209 AALV-GM-SKEEKVKIIKHIRKYMKDGGVLLV 238 (284)
Q Consensus 209 aa~v-~~-~~~~k~~il~~l~~~l~pGg~lv~ 238 (284)
.+.+ ++ +...+.++++++.+.++|||..++
T Consensus 110 iavihhlsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 110 IAVIHHLSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 6665 33 667789999999999999997554
No 300
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=96.63 E-value=0.013 Score=54.43 Aligned_cols=91 Identities=18% Similarity=0.144 Sum_probs=59.7
Q ss_pred CCEEEEeccCCChhHHHHHHhhcCCC--cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 131 PKKVAFVGSGPMPLTSIVMAKNHLKS--THFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 131 ~~~VL~IGsG~lp~tai~LA~~~~~g--~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
-++|..||+|.+|.+.....+ ..| .+|+++|.+++..+.+++ .|. .. . ...+.. ....+.|+|++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~--~~g~~~~V~~~dr~~~~~~~a~~----~g~-~~--~-~~~~~~---~~~~~aDvVii 72 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIR--RLGLAGEIVGADRSAETRARARE----LGL-GD--R-VTTSAA---EAVKGADLVIL 72 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHH--hcCCCcEEEEEECCHHHHHHHHh----CCC-Cc--e-ecCCHH---HHhcCCCEEEE
Confidence 368999999988765433222 134 489999999988776653 452 11 1 122221 12356899998
Q ss_pred cccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061 209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLV 238 (284)
Q Consensus 209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~ 238 (284)
+.-. .....+++.+...+++|+.++.
T Consensus 73 avp~----~~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 73 CVPV----GASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred CCCH----HHHHHHHHHHHhhCCCCCEEEe
Confidence 7654 4556788888888999986654
No 301
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.63 E-value=0.0067 Score=54.84 Aligned_cols=82 Identities=12% Similarity=0.275 Sum_probs=50.0
Q ss_pred CCCCC--CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHH---HHHHhcCCC----CCCeEEEEecccccc
Q 036061 127 GVVNP--KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVAR---QIVSSDIEF----EKRMKFVTCDIMQVK 197 (284)
Q Consensus 127 ~~~~~--~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar---~~~~~~G~l----~~~I~f~~~D~~~~~ 197 (284)
+.+++ .+|||.=+| +|-.|+.+|. .|++||+++.||-...+-+ +.+...... ..||+++++|..+..
T Consensus 70 Glk~~~~~~VLDaTaG-LG~Da~vlA~---~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L 145 (234)
T PF04445_consen 70 GLKPGMRPSVLDATAG-LGRDAFVLAS---LGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYL 145 (234)
T ss_dssp T-BTTB---EEETT-T-TSHHHHHHHH---HT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHC
T ss_pred CCCCCCCCEEEECCCc-chHHHHHHHc---cCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHH
Confidence 44444 399999999 8999999997 5899999999997765544 333333311 258999999998876
Q ss_pred cc-CCCccEEEecccc
Q 036061 198 EK-LGEYDCIFLAALV 212 (284)
Q Consensus 198 ~~-~~~fD~V~~aa~v 212 (284)
.. ...||+|+++.+.
T Consensus 146 ~~~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 146 RQPDNSFDVVYFDPMF 161 (234)
T ss_dssp CCHSS--SEEEE--S-
T ss_pred hhcCCCCCEEEECCCC
Confidence 52 3579999999865
No 302
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.62 E-value=0.01 Score=55.43 Aligned_cols=91 Identities=14% Similarity=0.096 Sum_probs=62.2
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
..+++|+.||.|..|..++..++ ..|++|+.+|.+++..+.++ ..|. ++. +..++.....++|+||.
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~--~~Ga~V~v~~r~~~~~~~~~----~~G~-----~~~--~~~~l~~~l~~aDiVI~ 216 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLK--ALGANVTVGARKSAHLARIT----EMGL-----SPF--HLSELAEEVGKIDIIFN 216 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHH--HCCCEEEEEECCHHHHHHHH----HcCC-----eee--cHHHHHHHhCCCCEEEE
Confidence 36899999999998888888777 46899999999988655544 4552 222 11222333467999997
Q ss_pred cccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061 209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVR 239 (284)
Q Consensus 209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r 239 (284)
+.-. .-+-+...+.|+||++++--
T Consensus 217 t~p~-------~~i~~~~l~~~~~g~vIIDl 240 (296)
T PRK08306 217 TIPA-------LVLTKEVLSKMPPEALIIDL 240 (296)
T ss_pred CCCh-------hhhhHHHHHcCCCCcEEEEE
Confidence 5321 11335667789999887743
No 303
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.62 E-value=0.00076 Score=57.51 Aligned_cols=103 Identities=17% Similarity=0.100 Sum_probs=64.1
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE------------------
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVT------------------ 190 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~------------------ 190 (284)
.+|.+|+.+|.|..|..|..+++ ..|++|+.+|..++..+..+.+.. ..+....
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~--~lGa~v~~~d~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~ 89 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAK--GLGAEVVVPDERPERLRQLESLGA------YFIEVDYEDHLERKDFDKADYYEHP 89 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHH--HTT-EEEEEESSHHHHHHHHHTTT------EESEETTTTTTTSB-CCHHHCHHHC
T ss_pred CCCeEEEEECCCHHHHHHHHHHh--HCCCEEEeccCCHHHHHhhhcccC------ceEEEcccccccccccchhhhhHHH
Confidence 57899999999999999999998 479999999999987776554221 1222210
Q ss_pred -eccccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 191 -CDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 191 -~D~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
..-..+......+|+|+.+.+......++ =+-++..+.|+||.+++=-+
T Consensus 90 ~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~-lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 90 ESYESNFAEFIAPADIVIGNGLYWGKRAPR-LVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp CHHHHHHHHHHHH-SEEEEHHHBTTSS----SBEHHHHHTSSTTEEEEETT
T ss_pred HHhHHHHHHHHhhCcEEeeecccCCCCCCE-EEEhHHhhccCCCceEEEEE
Confidence 00001112234689999877762222333 36677788899888776544
No 304
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=96.58 E-value=0.016 Score=60.36 Aligned_cols=99 Identities=16% Similarity=0.164 Sum_probs=72.0
Q ss_pred CEEEEeccCCChhHH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCC--------CCCeEEEEecccc
Q 036061 132 KKVAFVGSGPMPLTS-IVMAKNHLKSTHFDNFDIDEAANDVARQIVSS-------DIEF--------EKRMKFVTCDIMQ 195 (284)
Q Consensus 132 ~~VL~IGsG~lp~ta-i~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~G~l--------~~~I~f~~~D~~~ 195 (284)
++|..||+|.+|-.- .++|. .|..|+-+|+++++++.+++.+++ .|.+ ..+|++. .|.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~---~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-- 387 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSAS---KGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDY-- 387 (715)
T ss_pred ceEEEECCchhHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH--
Confidence 689999999887653 23444 799999999999999988776532 1211 1355543 232
Q ss_pred ccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 196 VKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 196 ~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
...++.|+|+-+. ..+.+-|.+++.++-++++|+.+|...+
T Consensus 388 --~~~~~aDlViEav--~E~l~~K~~vf~~l~~~~~~~~ilasNT 428 (715)
T PRK11730 388 --AGFERVDVVVEAV--VENPKVKAAVLAEVEQKVREDTILASNT 428 (715)
T ss_pred --HHhcCCCEEEecc--cCcHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 2346789999763 3456899999999999999999887765
No 305
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=96.58 E-value=0.013 Score=61.02 Aligned_cols=101 Identities=15% Similarity=0.154 Sum_probs=72.5
Q ss_pred CCCEEEEeccCCChhHHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-------CCC--------CCCeEEEEecc
Q 036061 130 NPKKVAFVGSGPMPLTSI-VMAKNHLKSTHFDNFDIDEAANDVARQIVSSD-------IEF--------EKRMKFVTCDI 193 (284)
Q Consensus 130 ~~~~VL~IGsG~lp~tai-~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-------G~l--------~~~I~f~~~D~ 193 (284)
+-++|..||+|.+|-.-. ++|. .|..|+-+|+|+++++.+++.+++. |.+ -.+|++. .|.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~---~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~ 387 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSAS---KGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSY 387 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH
Confidence 346899999998875432 3343 7999999999999999988766421 211 1244443 121
Q ss_pred ccccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 194 MQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 194 ~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
....+.|+|+-+.. .+.+-|.+++.++-++++|+++|...+
T Consensus 388 ----~~~~~aDlViEav~--E~l~~K~~vf~~l~~~~~~~~ilasnT 428 (714)
T TIGR02437 388 ----AGFDNVDIVVEAVV--ENPKVKAAVLAEVEQHVREDAILASNT 428 (714)
T ss_pred ----HHhcCCCEEEEcCc--ccHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 23567999997643 456889999999999999999987766
No 306
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.53 E-value=0.011 Score=56.57 Aligned_cols=108 Identities=18% Similarity=0.187 Sum_probs=71.3
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEec-ccc-ccc--cCC
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCD-IMQ-VKE--KLG 201 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D-~~~-~~~--~~~ 201 (284)
...++.+||.+|+|++|..++.+|++ .|. +|+++|.+++..+.+++.. + . .-+.+...+ ..+ +.. ...
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~--~g~~~vi~~~~~~~~~~~~~~~~---~-~-~vi~~~~~~~~~~~l~~~~~~~ 253 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKL--LGAERVIAIDRVPERLEMARSHL---G-A-ETINFEEVDDVVEALRELTGGR 253 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHHcC---C-c-EEEcCCcchHHHHHHHHHcCCC
Confidence 35678999999999999999999993 565 6999999999988888742 3 1 112222221 111 111 112
Q ss_pred CccEEEeccccc--------------CChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 202 EYDCIFLAALVG--------------MSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 202 ~fD~V~~aa~v~--------------~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
.+|+|+-+..-. ....++...++.+.+.|+|||.++.-..
T Consensus 254 ~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 254 GPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 599998643200 0112345688999999999999988753
No 307
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=96.52 E-value=0.016 Score=53.30 Aligned_cols=99 Identities=20% Similarity=0.218 Sum_probs=66.7
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc-c-cccCCCccE
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ-V-KEKLGEYDC 205 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~-~-~~~~~~fD~ 205 (284)
..++.+||..|+|+.|..++.+|+ ..|.+|++++.+++..+.+++ .| ...-+.....+..+ + ....+.+|+
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~--~~G~~V~~~~~s~~~~~~~~~----~g-~~~~~~~~~~~~~~~~~~~~~~~~D~ 235 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAK--AMGAAVIAVDIKEEKLELAKE----LG-ADEVLNSLDDSPKDKKAAGLGGGFDV 235 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHH--HcCCEEEEEcCCHHHHHHHHH----hC-CCEEEcCCCcCHHHHHHHhcCCCceE
Confidence 467889999999988999999998 468899999999988777754 45 21111111111100 0 112246999
Q ss_pred EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
|+-+... ...++++.+.|++||.++.-.
T Consensus 236 vid~~g~-------~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 236 IFDFVGT-------QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred EEECCCC-------HHHHHHHHHHhhcCCEEEEEC
Confidence 8854321 246788899999999998754
No 308
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=96.51 E-value=0.026 Score=54.45 Aligned_cols=103 Identities=17% Similarity=0.240 Sum_probs=66.7
Q ss_pred CCCCCCEEEEec-cCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhc----CCCCCCeEEEE----eccccc
Q 036061 127 GVVNPKKVAFVG-SGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSD----IEFEKRMKFVT----CDIMQV 196 (284)
Q Consensus 127 ~~~~~~~VL~IG-sG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~----G~l~~~I~f~~----~D~~~~ 196 (284)
...++.+|+.+| +|++|..++.+|++...|+ +|+++|.+++..+.|+++.... |. ...++. .|..+.
T Consensus 172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga---~~~~i~~~~~~~~~~~ 248 (410)
T cd08238 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI---ELLYVNPATIDDLHAT 248 (410)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc---eEEEECCCccccHHHH
Confidence 456788999997 7999999999998422233 7999999999999998853221 21 112221 111111
Q ss_pred c---ccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061 197 K---EKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR 239 (284)
Q Consensus 197 ~---~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r 239 (284)
. .....||+|+..... ...+....+.++++|.+++-
T Consensus 249 v~~~t~g~g~D~vid~~g~-------~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 249 LMELTGGQGFDDVFVFVPV-------PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHHHhCCCCCCEEEEcCCC-------HHHHHHHHHHhccCCeEEEE
Confidence 1 112359999865332 24667788899988876654
No 309
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=96.51 E-value=0.02 Score=54.24 Aligned_cols=101 Identities=22% Similarity=0.183 Sum_probs=66.7
Q ss_pred cCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe--ccccccc--cC
Q 036061 126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC--DIMQVKE--KL 200 (284)
Q Consensus 126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~--D~~~~~~--~~ 200 (284)
....++++||..|+|++|..++.+|+ ..|+ +|+++|.+++..+.+++ +|. ..-+..... |..+... ..
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak--~~G~~~vi~~~~~~~~~~~~~~----lGa-~~~i~~~~~~~~~~~~v~~~~~ 254 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAK--AAGASRIIGIDINPDKFELAKK----FGA-TDCVNPKDHDKPIQQVLVEMTD 254 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHH--HcCCCeEEEEeCCHHHHHHHHH----cCC-CEEEcccccchHHHHHHHHHhC
Confidence 34578999999999999999999999 4678 79999999998877754 562 211111111 1111110 01
Q ss_pred CCccEEEecccccCChHHHHHHHHHHHhhcCCC-cEEEEEe
Q 036061 201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDG-GVLLVRS 240 (284)
Q Consensus 201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pG-g~lv~r~ 240 (284)
+.+|+|+-+..- ...+....+.+++| |++++-.
T Consensus 255 ~g~d~vid~~g~-------~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 255 GGVDYTFECIGN-------VKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred CCCcEEEECCCC-------hHHHHHHHHhhccCCCeEEEEc
Confidence 269999854331 23567778888887 8887654
No 310
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=96.50 E-value=0.0036 Score=56.54 Aligned_cols=103 Identities=9% Similarity=-0.006 Sum_probs=73.5
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
+.-..+++||||- |.-+-.|-. ..=.+++-.|.|-+|++.++. ... -+-.+...++|-..++...+++|+|+.
T Consensus 71 k~fp~a~diGcs~-G~v~rhl~~--e~vekli~~DtS~~M~~s~~~---~qd-p~i~~~~~v~DEE~Ldf~ens~DLiis 143 (325)
T KOG2940|consen 71 KSFPTAFDIGCSL-GAVKRHLRG--EGVEKLIMMDTSYDMIKSCRD---AQD-PSIETSYFVGDEEFLDFKENSVDLIIS 143 (325)
T ss_pred hhCcceeecccch-hhhhHHHHh--cchhheeeeecchHHHHHhhc---cCC-CceEEEEEecchhcccccccchhhhhh
Confidence 3456899999984 544444433 123578999999999999887 322 234678889997777776678999986
Q ss_pred cccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061 209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVR 239 (284)
Q Consensus 209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r 239 (284)
+-..+|. .+-...+.++...+||+|.++-.
T Consensus 144 SlslHW~-NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 144 SLSLHWT-NDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhhhhh-ccCchHHHHHHHhcCCCccchhH
Confidence 5444553 33345678899999999999863
No 311
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=96.49 E-value=0.013 Score=51.63 Aligned_cols=99 Identities=15% Similarity=0.188 Sum_probs=65.7
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc-c-cccCCCccEE
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ-V-KEKLGEYDCI 206 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~-~-~~~~~~fD~V 206 (284)
.++.+||..|+|++|..++.+++ ..|.+|++++.+++..+.+++ .|. ..-+.....+... + ....+.+|+|
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~--~~g~~v~~~~~~~~~~~~~~~----~g~-~~~~~~~~~~~~~~~~~~~~~~~d~v 205 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAK--AAGARVIVTDRSDEKLELAKE----LGA-DHVIDYKEEDLEEELRLTGGGGADVV 205 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH--HcCCeEEEEcCCHHHHHHHHH----hCC-ceeccCCcCCHHHHHHHhcCCCCCEE
Confidence 67899999999988888888888 467999999999988776654 341 1111111111100 0 1123469999
Q ss_pred EecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
+.+... . ..+..+.+.|+++|.++.-..
T Consensus 206 i~~~~~----~---~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 206 IDAVGG----P---ETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred EECCCC----H---HHHHHHHHhcccCCEEEEEcc
Confidence 865432 1 456788889999999987653
No 312
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=96.46 E-value=0.028 Score=54.23 Aligned_cols=106 Identities=19% Similarity=0.191 Sum_probs=69.5
Q ss_pred hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe---cccc-cc--
Q 036061 125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC---DIMQ-VK-- 197 (284)
Q Consensus 125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~---D~~~-~~-- 197 (284)
+....++++||..|+|++|..++.+|+ ..|++ |+..|.+++..+.|++ +|. + .+... +..+ +.
T Consensus 180 ~~~~~~g~~VlV~G~G~iG~~aiqlAk--~~Ga~~vi~~d~~~~r~~~a~~----~Ga--~--~v~~~~~~~~~~~v~~~ 249 (393)
T TIGR02819 180 TAGVGPGSTVYIAGAGPVGLAAAASAQ--LLGAAVVIVGDLNPARLAQARS----FGC--E--TVDLSKDATLPEQIEQI 249 (393)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHH--HcCCceEEEeCCCHHHHHHHHH----cCC--e--EEecCCcccHHHHHHHH
Confidence 345678899999999999999999998 35666 5667899888877766 462 2 22211 1111 11
Q ss_pred ccCCCccEEEecccccC-------ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 198 EKLGEYDCIFLAALVGM-------SKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 198 ~~~~~fD~V~~aa~v~~-------~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.....+|+|+-+..... ...+....+++..+.+++||++++-.
T Consensus 250 ~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 250 LGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred cCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence 11235999986544210 01122357888899999999998854
No 313
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=96.46 E-value=0.021 Score=52.81 Aligned_cols=99 Identities=16% Similarity=0.145 Sum_probs=66.1
Q ss_pred CCCCCCEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe-ccccccc--cCCC
Q 036061 127 GVVNPKKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC-DIMQVKE--KLGE 202 (284)
Q Consensus 127 ~~~~~~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~-D~~~~~~--~~~~ 202 (284)
...++.+||..| +|++|..++.+|+ ..|++|++++.+++..+.+++ +|. ..-+..... +..+... ..+.
T Consensus 135 ~~~~g~~VLI~ga~g~vG~~aiqlAk--~~G~~Vi~~~~s~~~~~~~~~----lGa-~~vi~~~~~~~~~~~~~~~~~~g 207 (325)
T TIGR02825 135 GVKGGETVMVNAAAGAVGSVVGQIAK--LKGCKVVGAAGSDEKVAYLKK----LGF-DVAFNYKTVKSLEETLKKASPDG 207 (325)
T ss_pred CCCCCCEEEEeCCccHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHH----cCC-CEEEeccccccHHHHHHHhCCCC
Confidence 457889999999 5899999999999 478999999999887766644 562 111111111 1111111 1135
Q ss_pred ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+|+||-+.. . ..++...+.+++||+++.-.
T Consensus 208 vdvv~d~~G-----~---~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 208 YDCYFDNVG-----G---EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred eEEEEECCC-----H---HHHHHHHHHhCcCcEEEEec
Confidence 999984322 1 24578889999999998654
No 314
>PLN02827 Alcohol dehydrogenase-like
Probab=96.45 E-value=0.025 Score=54.03 Aligned_cols=100 Identities=21% Similarity=0.177 Sum_probs=65.6
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE--ecccccccc--CC
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVT--CDIMQVKEK--LG 201 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~--~D~~~~~~~--~~ 201 (284)
...++++||..|+|++|..++.+|+ ..|+ .|+++|.+++..+.|++ +| ...-+.... .+..+.... .+
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak--~~G~~~vi~~~~~~~~~~~a~~----lG-a~~~i~~~~~~~~~~~~v~~~~~~ 262 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAK--LRGASQIIGVDINPEKAEKAKT----FG-VTDFINPNDLSEPIQQVIKRMTGG 262 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHH--HcCCCeEEEECCCHHHHHHHHH----cC-CcEEEcccccchHHHHHHHHHhCC
Confidence 4578899999999999999999999 3576 59999999988777654 56 221121111 111111111 12
Q ss_pred CccEEEecccccCChHHHHHHHHHHHhhcCCC-cEEEEEe
Q 036061 202 EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDG-GVLLVRS 240 (284)
Q Consensus 202 ~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pG-g~lv~r~ 240 (284)
.+|+|+-+... ...+....+.+++| |++++-.
T Consensus 263 g~d~vid~~G~-------~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 263 GADYSFECVGD-------TGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CCCEEEECCCC-------hHHHHHHHHhhccCCCEEEEEC
Confidence 69999865432 12456777888998 9987643
No 315
>PHA01634 hypothetical protein
Probab=96.41 E-value=0.019 Score=47.44 Aligned_cols=73 Identities=8% Similarity=0.129 Sum_probs=54.4
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~ 207 (284)
-.+++|++||++ .|-||++++- .|+ .|++++.+|...+..+++++-.....+.+-- + +++...+.||+..
T Consensus 27 vk~KtV~dIGA~-iGdSaiYF~l---~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~--~---eW~~~Y~~~Di~~ 97 (156)
T PHA01634 27 VYQRTIQIVGAD-CGSSALYFLL---RGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMK--G---EWNGEYEDVDIFV 97 (156)
T ss_pred ecCCEEEEecCC-ccchhhHHhh---cCccEEEEeccCHHHHHHHHHHhhhheeeeceeec--c---cccccCCCcceEE
Confidence 578999999998 7999999986 565 5999999999999999988765432221111 1 3555567899877
Q ss_pred ecc
Q 036061 208 LAA 210 (284)
Q Consensus 208 ~aa 210 (284)
++.
T Consensus 98 iDC 100 (156)
T PHA01634 98 MDC 100 (156)
T ss_pred EEc
Confidence 664
No 316
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=96.40 E-value=0.018 Score=53.83 Aligned_cols=102 Identities=16% Similarity=0.210 Sum_probs=68.1
Q ss_pred hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc-ccc--cC
Q 036061 125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ-VKE--KL 200 (284)
Q Consensus 125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~-~~~--~~ 200 (284)
.....++++||..|+|++|..++.+|+ ..|. .|+++|.+++..+.+++ +| ...-+.....+..+ +.. .-
T Consensus 161 ~~~~~~g~~vlI~g~g~iG~~~~~lak--~~G~~~v~~~~~~~~~~~~~~~----~g-~~~~v~~~~~~~~~~i~~~~~~ 233 (351)
T cd08285 161 LANIKLGDTVAVFGIGPVGLMAVAGAR--LRGAGRIIAVGSRPNRVELAKE----YG-ATDIVDYKNGDVVEQILKLTGG 233 (351)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHH--HcCCCeEEEEeCCHHHHHHHHH----cC-CceEecCCCCCHHHHHHHHhCC
Confidence 345678899999999999999999999 3567 59999999988777764 56 22112221112111 111 11
Q ss_pred CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
..+|+|+-+.. . ...+....+.|+++|+++.-.
T Consensus 234 ~~~d~vld~~g-----~--~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 234 KGVDAVIIAGG-----G--QDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred CCCcEEEECCC-----C--HHHHHHHHHHhhcCCEEEEec
Confidence 35999885433 1 246788899999999988643
No 317
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=96.38 E-value=0.018 Score=53.94 Aligned_cols=102 Identities=17% Similarity=0.160 Sum_probs=68.7
Q ss_pred cCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc---ccCC
Q 036061 126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK---EKLG 201 (284)
Q Consensus 126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~---~~~~ 201 (284)
....++.+||..|+|++|..++.+|+ ..|+ +|+.++.+++..+.+++ +|. ..-+.....|..+.. ...+
T Consensus 168 ~~~~~g~~vlI~g~g~vG~~a~q~a~--~~G~~~v~~~~~~~~~~~~~~~----~ga-~~~i~~~~~~~~~~l~~~~~~~ 240 (351)
T cd08233 168 SGFKPGDTALVLGAGPIGLLTILALK--AAGASKIIVSEPSEARRELAEE----LGA-TIVLDPTEVDVVAEVRKLTGGG 240 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHH--HcCCCEEEEECCCHHHHHHHHH----hCC-CEEECCCccCHHHHHHHHhCCC
Confidence 34578899999999999999999999 4688 89999999998877755 352 211122222221111 1113
Q ss_pred CccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 202 EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 202 ~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
.+|+|+-+..- ...++...+.|++||.++.-..
T Consensus 241 ~~d~vid~~g~-------~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 241 GVDVSFDCAGV-------QATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CCCEEEECCCC-------HHHHHHHHHhccCCCEEEEEcc
Confidence 49999865431 1356788899999999887543
No 318
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=96.36 E-value=0.023 Score=52.28 Aligned_cols=87 Identities=13% Similarity=0.098 Sum_probs=57.8
Q ss_pred CEEEEeccCCChhHHHH-HHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061 132 KKVAFVGSGPMPLTSIV-MAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA 210 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai~-LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa 210 (284)
++|..||+|.+|.+-.. |++ .|.+|+++|.+++..+.+.+ .|. +.....+. ....+.|+||++.
T Consensus 1 m~I~IIG~G~mG~sla~~L~~---~g~~V~~~d~~~~~~~~a~~----~g~----~~~~~~~~----~~~~~aDlVilav 65 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRS---LGHTVYGVSRRESTCERAIE----RGL----VDEASTDL----SLLKDCDLVILAL 65 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHH----CCC----cccccCCH----hHhcCCCEEEEcC
Confidence 37999999988765322 333 57899999999998877754 342 11111121 1235689999875
Q ss_pred cccCChHHHHHHHHHHHhhcCCCcEEE
Q 036061 211 LVGMSKEEKVKIIKHIRKYMKDGGVLL 237 (284)
Q Consensus 211 ~v~~~~~~k~~il~~l~~~l~pGg~lv 237 (284)
-. ..-.++++.+...++++.++.
T Consensus 66 p~----~~~~~~~~~l~~~l~~~~ii~ 88 (279)
T PRK07417 66 PI----GLLLPPSEQLIPALPPEAIVT 88 (279)
T ss_pred CH----HHHHHHHHHHHHhCCCCcEEE
Confidence 53 445668889998888886553
No 319
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=96.36 E-value=0.036 Score=52.43 Aligned_cols=101 Identities=17% Similarity=0.174 Sum_probs=65.9
Q ss_pred cCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe--ccccccc--cC
Q 036061 126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC--DIMQVKE--KL 200 (284)
Q Consensus 126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~--D~~~~~~--~~ 200 (284)
....++++||..|+|++|..++.+|+ ..|+ +|+++|.+++..+.+++ +|. ..-+..... +..+... ..
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak--~~G~~~vi~~~~~~~~~~~~~~----~Ga-~~~i~~~~~~~~~~~~v~~~~~ 255 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGAR--IRGASRIIGVDLNPSKFEQAKK----FGV-TEFVNPKDHDKPVQEVIAEMTG 255 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHH--HcCCCeEEEEcCCHHHHHHHHH----cCC-ceEEcccccchhHHHHHHHHhC
Confidence 34578999999999999999999999 4677 79999999998777654 562 211211110 1111000 11
Q ss_pred CCccEEEecccccCChHHHHHHHHHHHhhcCCC-cEEEEEe
Q 036061 201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDG-GVLLVRS 240 (284)
Q Consensus 201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pG-g~lv~r~ 240 (284)
+.+|+|+-+... ...+....+.+++| |++++-.
T Consensus 256 ~~~d~vid~~G~-------~~~~~~~~~~~~~~~g~~v~~g 289 (369)
T cd08301 256 GGVDYSFECTGN-------IDAMISAFECVHDGWGVTVLLG 289 (369)
T ss_pred CCCCEEEECCCC-------hHHHHHHHHHhhcCCCEEEEEC
Confidence 258998854321 23556677888996 8887754
No 320
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=96.35 E-value=0.021 Score=54.05 Aligned_cols=99 Identities=21% Similarity=0.221 Sum_probs=65.9
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe--cccc-c--cccC
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC--DIMQ-V--KEKL 200 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~--D~~~-~--~~~~ 200 (284)
...++.+||..|+|++|..++.+|+ ..|+ +|+++|.+++..+.+++ +|. ..-+....- +..+ + ...
T Consensus 181 ~~~~g~~vlV~G~g~vG~~~~~~a~--~~G~~~Vi~~~~~~~~~~~~~~----~ga-~~~i~~~~~~~~~~~~~~~~~~- 252 (365)
T cd08277 181 KVEPGSTVAVFGLGAVGLSAIMGAK--IAGASRIIGVDINEDKFEKAKE----FGA-TDFINPKDSDKPVSEVIREMTG- 252 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHH--HcCCCeEEEEeCCHHHHHHHHH----cCC-CcEeccccccchHHHHHHHHhC-
Confidence 4578899999999999999999999 3577 79999999988777754 452 111111110 0111 1 111
Q ss_pred CCccEEEecccccCChHHHHHHHHHHHhhcCCC-cEEEEEe
Q 036061 201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDG-GVLLVRS 240 (284)
Q Consensus 201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pG-g~lv~r~ 240 (284)
+.+|+|+-+..- ...+....+.+++| |.+++-.
T Consensus 253 ~g~d~vid~~g~-------~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 253 GGVDYSFECTGN-------ADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred CCCCEEEECCCC-------hHHHHHHHHhcccCCCEEEEEc
Confidence 369999854331 23567788899886 8887754
No 321
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.33 E-value=0.011 Score=56.44 Aligned_cols=110 Identities=15% Similarity=0.196 Sum_probs=71.2
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCC---C
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLG---E 202 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~---~ 202 (284)
..-.|++|||+|.||+ |.++-+....|.- .++-++-||..-+..-.+.+..+ . .......+|++.-..+++ .
T Consensus 110 ~dfapqsiLDvG~GPg--tgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~-t-~~td~r~s~vt~dRl~lp~ad~ 185 (484)
T COG5459 110 PDFAPQSILDVGAGPG--TGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS-T-EKTDWRASDVTEDRLSLPAADL 185 (484)
T ss_pred CCcCcchhhccCCCCc--hhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc-c-ccCCCCCCccchhccCCCccce
Confidence 3467889999999973 4454333234443 47778889888888887777665 2 334555666653222332 4
Q ss_pred ccEEEecc-cccC-ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 203 YDCIFLAA-LVGM-SKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 203 fD~V~~aa-~v~~-~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
||++++.. ++++ ...+-...+++++..++|||.|++-.
T Consensus 186 ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivE 225 (484)
T COG5459 186 YTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVE 225 (484)
T ss_pred eehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEe
Confidence 78777544 4443 22233558999999999999988865
No 322
>PLN02494 adenosylhomocysteinase
Probab=96.33 E-value=0.032 Score=55.35 Aligned_cols=146 Identities=12% Similarity=0.039 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHhhHhhhHHHHHHh---cCC------CCcccccccCCCcchhhhhhHHHHHHHHhcC--CCCCCEEEE
Q 036061 68 QEMRESLIVLCGRAEGLLELEFATFF---AKT------PQPLNNLNLFPYYGNYVKLANLEYRILDENG--VVNPKKVAF 136 (284)
Q Consensus 68 ~~l~~~l~~l~~~~e~~lE~~~a~~l---~~~------~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~--~~~~~~VL~ 136 (284)
.++.+.++=.+.+-+.-.-++++..- +.. +.+.+++ |+|-...-+--++.+.+.. ...+++|+.
T Consensus 185 ~~~~~~i~G~~EeTttGv~Rl~~m~~~g~L~~Pvi~vnds~~K~~-----fDn~yGtgqS~~d~i~r~t~i~LaGKtVvV 259 (477)
T PLN02494 185 HKMKERLVGVSEETTTGVKRLYQMQKNGTLLFPAINVNDSVTKSK-----FDNLYGCRHSLPDGLMRATDVMIAGKVAVI 259 (477)
T ss_pred hHHHHhhcCCcccccHHHHHHHHHHHCCCCCCCEEEEcChhhhhh-----hhccccccccHHHHHHHhcCCccCCCEEEE
Confidence 44555555555555444444444221 111 3344432 3333332222234444442 257899999
Q ss_pred eccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecccccCCh
Q 036061 137 VGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSK 216 (284)
Q Consensus 137 IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~v~~~~ 216 (284)
+|+|++|......++ ..|++|+.+|+|+.....|. ..|. .+. +..+ .+...|+|+.+..
T Consensus 260 iGyG~IGr~vA~~ak--a~Ga~VIV~e~dp~r~~eA~----~~G~-----~vv--~leE---al~~ADVVI~tTG----- 318 (477)
T PLN02494 260 CGYGDVGKGCAAAMK--AAGARVIVTEIDPICALQAL----MEGY-----QVL--TLED---VVSEADIFVTTTG----- 318 (477)
T ss_pred ECCCHHHHHHHHHHH--HCCCEEEEEeCCchhhHHHH----hcCC-----eec--cHHH---HHhhCCEEEECCC-----
Confidence 999999998888887 46899999999987644443 2352 111 2222 2346899986432
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 217 EEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 217 ~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.+.-+.....+.||+||+|+.-.
T Consensus 319 -t~~vI~~e~L~~MK~GAiLiNvG 341 (477)
T PLN02494 319 -NKDIIMVDHMRKMKNNAIVCNIG 341 (477)
T ss_pred -CccchHHHHHhcCCCCCEEEEcC
Confidence 23334477778999999987754
No 323
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=96.26 E-value=0.029 Score=56.02 Aligned_cols=102 Identities=17% Similarity=0.233 Sum_probs=62.5
Q ss_pred CEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHH-------hcCC--C--CCCeEEEEecccccccc
Q 036061 132 KKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVS-------SDIE--F--EKRMKFVTCDIMQVKEK 199 (284)
Q Consensus 132 ~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~-------~~G~--l--~~~I~f~~~D~~~~~~~ 199 (284)
++|.+||+|.+|.. |..+++ .|..|+.+|++++..+...+..+ .+.. + ..++++. .|. ...
T Consensus 5 ~kIavIG~G~MG~~iA~~la~---~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~-~~~---~ea 77 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLL---AGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFC-ASL---AEA 77 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEee-CCH---HHH
Confidence 58999999987754 223343 68899999999999876543221 1110 0 0124432 222 122
Q ss_pred CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCc
Q 036061 200 LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKG 243 (284)
Q Consensus 200 ~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~g 243 (284)
..+.|+|+.+.. .+.+-|..++..+...++|+.+ +..+..|
T Consensus 78 ~~~aD~Vieavp--e~~~vk~~l~~~l~~~~~~~~i-I~SsTsg 118 (495)
T PRK07531 78 VAGADWIQESVP--ERLDLKRRVLAEIDAAARPDAL-IGSSTSG 118 (495)
T ss_pred hcCCCEEEEcCc--CCHHHHHHHHHHHHhhCCCCcE-EEEcCCC
Confidence 356899997532 2335588899999888887764 4444444
No 324
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=96.23 E-value=0.045 Score=49.10 Aligned_cols=97 Identities=19% Similarity=0.128 Sum_probs=66.5
Q ss_pred cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061 126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD 204 (284)
Q Consensus 126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD 204 (284)
....++.+||..|+|++|..++.+|++ .|.+ |++++.+++..+.+++ .| ..+.+.....+ . .....+|
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~--~g~~~vi~~~~~~~~~~~~~~----~g-~~~~~~~~~~~---~-~~~~~~d 161 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKA--AGAREVVGVDPDAARRELAEA----LG-PADPVAADTAD---E-IGGRGAD 161 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCcEEEECCCHHHHHHHHH----cC-CCccccccchh---h-hcCCCCC
Confidence 345788999999999999999999994 5677 9999999998776665 34 11222111111 1 1224699
Q ss_pred EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+|+..... ...+....+.|+++|.++.-.
T Consensus 162 ~vl~~~~~-------~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 162 VVIEASGS-------PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred EEEEccCC-------hHHHHHHHHHhcCCcEEEEEe
Confidence 99854332 135678888999999988643
No 325
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=96.22 E-value=0.034 Score=52.86 Aligned_cols=98 Identities=22% Similarity=0.264 Sum_probs=69.3
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe----ccccccccC--
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC----DIMQVKEKL-- 200 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~----D~~~~~~~~-- 200 (284)
...++.+|..+|+|..|++++.-|+ ...-.++.+||++++..++|++ +|. ..++.. |+.+...++
T Consensus 182 ~v~~G~tvaV~GlGgVGlaaI~gA~-~agA~~IiAvD~~~~Kl~~A~~----fGA----T~~vn~~~~~~vv~~i~~~T~ 252 (366)
T COG1062 182 KVEPGDTVAVFGLGGVGLAAIQGAK-AAGAGRIIAVDINPEKLELAKK----FGA----THFVNPKEVDDVVEAIVELTD 252 (366)
T ss_pred cCCCCCeEEEEeccHhHHHHHHHHH-HcCCceEEEEeCCHHHHHHHHh----cCC----ceeecchhhhhHHHHHHHhcC
Confidence 3588999999999999999999998 4455689999999999999987 442 233322 333222222
Q ss_pred CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+.-|.+|-...- .+++++......++|..++--
T Consensus 253 gG~d~~~e~~G~-------~~~~~~al~~~~~~G~~v~iG 285 (366)
T COG1062 253 GGADYAFECVGN-------VEVMRQALEATHRGGTSVIIG 285 (366)
T ss_pred CCCCEEEEccCC-------HHHHHHHHHHHhcCCeEEEEe
Confidence 257888755431 237777777778899887744
No 326
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=96.21 E-value=0.055 Score=52.85 Aligned_cols=95 Identities=17% Similarity=0.245 Sum_probs=62.2
Q ss_pred CEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHH------------HHH---hcCCCCCCeEEEEecccc
Q 036061 132 KKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQ------------IVS---SDIEFEKRMKFVTCDIMQ 195 (284)
Q Consensus 132 ~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~------------~~~---~~G~l~~~I~f~~~D~~~ 195 (284)
++|.+||.|-+|.+ |..|++ .|.+|+++|+|++.++.-++ ++. +.| +.++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~---~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g----~l~~~------ 70 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFAS---RQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGG----YLRAT------ 70 (415)
T ss_pred cEEEEECcchhhHHHHHHHHh---CCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcC----ceeee------
Confidence 68999999977655 334555 68999999999998885221 111 112 12221
Q ss_pred ccccCCCccEEEeccccc------CChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 196 VKEKLGEYDCIFLAALVG------MSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 196 ~~~~~~~fD~V~~aa~v~------~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
.+....|+||++.... .+...-..+++.+.+.+++|.+++.++.
T Consensus 71 --~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ST 120 (415)
T PRK11064 71 --TTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILEST 120 (415)
T ss_pred --cccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 1123579999875432 1223445677899999999999998874
No 327
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=96.21 E-value=0.062 Score=52.70 Aligned_cols=101 Identities=19% Similarity=0.281 Sum_probs=63.2
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHH-----------HhcCCCCCCeEEEEecccccc
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIV-----------SSDIEFEKRMKFVTCDIMQVK 197 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~-----------~~~G~l~~~I~f~~~D~~~~~ 197 (284)
.++++|.+||.|-+|+..... ...+.+|+++|+|++.++.-++-. .+.| +..+. .+. +
T Consensus 4 ~~~mkI~vIGlGyvGlpmA~~---la~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g----~l~~t-~~~-~-- 72 (425)
T PRK15182 4 IDEVKIAIIGLGYVGLPLAVE---FGKSRQVVGFDVNKKRILELKNGVDVNLETTEEELREAR----YLKFT-SEI-E-- 72 (425)
T ss_pred CCCCeEEEECcCcchHHHHHH---HhcCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhC----CeeEE-eCH-H--
Confidence 456899999999777653322 224689999999999988765211 0111 22222 222 1
Q ss_pred ccCCCccEEEecccccC------ChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 198 EKLGEYDCIFLAALVGM------SKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 198 ~~~~~fD~V~~aa~v~~------~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
.....|+||++-.-.. +...-....+.+.+.+++|.+++.++.
T Consensus 73 -~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~ST 121 (425)
T PRK15182 73 -KIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYEST 121 (425)
T ss_pred -HHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 2346899997654221 112334445789999999999999883
No 328
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.21 E-value=0.062 Score=50.09 Aligned_cols=100 Identities=19% Similarity=0.254 Sum_probs=62.7
Q ss_pred CEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHH-------hcCCCC--------CCeEEEEecccc
Q 036061 132 KKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVS-------SDIEFE--------KRMKFVTCDIMQ 195 (284)
Q Consensus 132 ~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~-------~~G~l~--------~~I~f~~~D~~~ 195 (284)
++|.+||+|.+|.+ +..+++ .|.+|+.+|++++.++.+++.++ ..|.+. .++++. .|..
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~---~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~-~~~~- 77 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFAR---AGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVT-DSLA- 77 (308)
T ss_pred cEEEEECccHHHHHHHHHHHH---CCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEE-CcHH-
Confidence 47999999987754 333444 68899999999999888765432 234111 123432 2332
Q ss_pred ccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 196 VKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 196 ~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
....+.|+|+.+..- +.+-|..+++.+.+..+++ .++..+.
T Consensus 78 --~a~~~ad~Vi~avpe--~~~~k~~~~~~l~~~~~~~-~ii~sst 118 (308)
T PRK06129 78 --DAVADADYVQESAPE--NLELKRALFAELDALAPPH-AILASST 118 (308)
T ss_pred --HhhCCCCEEEECCcC--CHHHHHHHHHHHHHhCCCc-ceEEEeC
Confidence 223568999976532 2356888898887776555 4444443
No 329
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=96.20 E-value=0.018 Score=53.55 Aligned_cols=94 Identities=9% Similarity=0.063 Sum_probs=61.8
Q ss_pred CEEEEecc-CCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--cCCCccEEE
Q 036061 132 KKVAFVGS-GPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--KLGEYDCIF 207 (284)
Q Consensus 132 ~~VL~IGs-G~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--~~~~fD~V~ 207 (284)
++||..|+ |++|..++.+|+ ..|+ +|++++.+++..+.+++ .+|. ..-+.....|..+... ..+.+|+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk--~~G~~~Vi~~~~s~~~~~~~~~---~lGa-~~vi~~~~~~~~~~i~~~~~~gvd~vi 229 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGR--LLGCSRVVGICGSDEKCQLLKS---ELGF-DAAINYKTDNVAERLRELCPEGVDVYF 229 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHH--HcCCCEEEEEcCCHHHHHHHHH---hcCC-cEEEECCCCCHHHHHHHHCCCCceEEE
Confidence 89999997 899999999999 3688 79999999887666655 3662 2211211112111111 114699998
Q ss_pred ecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061 208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR 239 (284)
Q Consensus 208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r 239 (284)
-+.. . ..+....+.|++||+++.-
T Consensus 230 d~~g-----~---~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 230 DNVG-----G---EISDTVISQMNENSHIILC 253 (345)
T ss_pred ECCC-----c---HHHHHHHHHhccCCEEEEE
Confidence 5332 1 1247788899999999864
No 330
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=96.18 E-value=0.034 Score=51.54 Aligned_cols=99 Identities=18% Similarity=0.300 Sum_probs=64.5
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC 205 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~ 205 (284)
...++.+||..|+|.+|..++.+|++ .|. +|++++.+++..+.+++ .| ...-+.....+..+.....+.+|+
T Consensus 162 ~~~~~~~VLI~g~g~vG~~~~~lak~--~G~~~v~~~~~s~~~~~~~~~----~g-~~~vi~~~~~~~~~~~~~~~~vd~ 234 (339)
T cd08232 162 GDLAGKRVLVTGAGPIGALVVAAARR--AGAAEIVATDLADAPLAVARA----MG-ADETVNLARDPLAAYAADKGDFDV 234 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEECCCHHHHHHHHH----cC-CCEEEcCCchhhhhhhccCCCccE
Confidence 33478999999999889999999983 577 79999999887776554 45 211111111111122222235999
Q ss_pred EEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061 206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR 239 (284)
Q Consensus 206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r 239 (284)
|+-+... ...++++.+.|+++|+++.-
T Consensus 235 vld~~g~-------~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 235 VFEASGA-------PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred EEECCCC-------HHHHHHHHHHHhcCCEEEEE
Confidence 9854331 23567889999999998864
No 331
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=96.17 E-value=0.061 Score=52.11 Aligned_cols=103 Identities=15% Similarity=0.239 Sum_probs=61.2
Q ss_pred CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh---cCC----CCCCeEEEE-eccccccccCCCc
Q 036061 132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSS---DIE----FEKRMKFVT-CDIMQVKEKLGEY 203 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~---~G~----l~~~I~f~~-~D~~~~~~~~~~f 203 (284)
++|..||.|-+|+....+.. .|.+|+++|+|++.++..++-... -|. ...+.++.. .|..+ .....
T Consensus 1 mkI~VIGlGyvGl~~A~~lA---~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~---~~~~a 74 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA---QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNE---AYRDA 74 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH---hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhh---hhcCC
Confidence 37999999977765444333 378999999999999888762100 000 001222321 11111 12457
Q ss_pred cEEEecccccC-------ChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 204 DCIFLAALVGM-------SKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 204 D~V~~aa~v~~-------~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
|+||++..-.. +...-..+++.+.+ +++|.+++.++.
T Consensus 75 d~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~ST 118 (388)
T PRK15057 75 DYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKST 118 (388)
T ss_pred CEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeee
Confidence 99987643211 11233567788887 699999888873
No 332
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.16 E-value=0.052 Score=42.58 Aligned_cols=93 Identities=13% Similarity=0.144 Sum_probs=61.0
Q ss_pred EEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc----cCCCccEEEec
Q 036061 134 VAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE----KLGEYDCIFLA 209 (284)
Q Consensus 134 VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~----~~~~fD~V~~a 209 (284)
|+.+|+|.+|......-+ ..+..|+.+|.|++.++.+++ .| +.++.||..+... ...+.|.|+..
T Consensus 1 vvI~G~g~~~~~i~~~L~--~~~~~vvvid~d~~~~~~~~~----~~-----~~~i~gd~~~~~~l~~a~i~~a~~vv~~ 69 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLK--EGGIDVVVIDRDPERVEELRE----EG-----VEVIYGDATDPEVLERAGIEKADAVVIL 69 (116)
T ss_dssp EEEES-SHHHHHHHHHHH--HTTSEEEEEESSHHHHHHHHH----TT-----SEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred eEEEcCCHHHHHHHHHHH--hCCCEEEEEECCcHHHHHHHh----cc-----cccccccchhhhHHhhcCccccCEEEEc
Confidence 578999976555333333 234589999999999877765 22 5799999986422 33468888765
Q ss_pred ccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 210 ALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 210 a~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
.. .....-.+-...+.+.|...++++..
T Consensus 70 ~~----~d~~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 70 TD----DDEENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp SS----SHHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred cC----CHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 33 13444455566677789999998874
No 333
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=96.14 E-value=0.04 Score=51.32 Aligned_cols=100 Identities=16% Similarity=0.131 Sum_probs=67.2
Q ss_pred CCCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe-cccccccc--CCC
Q 036061 127 GVVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC-DIMQVKEK--LGE 202 (284)
Q Consensus 127 ~~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~-D~~~~~~~--~~~ 202 (284)
...++++||-.|+ |++|..++.+|+ ..|++|++++.+++..+.+++ .+| ...-+.+... |..+.... .+.
T Consensus 148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk--~~G~~Vi~~~~~~~~~~~~~~---~lG-a~~vi~~~~~~~~~~~i~~~~~~g 221 (338)
T cd08295 148 KPKKGETVFVSAASGAVGQLVGQLAK--LKGCYVVGSAGSDEKVDLLKN---KLG-FDDAFNYKEEPDLDAALKRYFPNG 221 (338)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHH---hcC-CceeEEcCCcccHHHHHHHhCCCC
Confidence 4578899999997 889999999999 478999999999887666655 256 2221221111 22111111 146
Q ss_pred ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+|+|+-. ++ . ..+....+.+++||+++.-.
T Consensus 222 vd~v~d~--~g---~---~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 222 IDIYFDN--VG---G---KMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred cEEEEEC--CC---H---HHHHHHHHHhccCcEEEEec
Confidence 9999843 22 1 35678889999999998643
No 334
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=96.13 E-value=0.058 Score=49.86 Aligned_cols=102 Identities=17% Similarity=0.231 Sum_probs=67.5
Q ss_pred cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE-ecc-ccccccCCCc
Q 036061 126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVT-CDI-MQVKEKLGEY 203 (284)
Q Consensus 126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~-~D~-~~~~~~~~~f 203 (284)
....++.+||..|+|++|..++.+|++ ..|++|++++.+++..+.+++ +| ...-+.... .+. ..+....+.+
T Consensus 158 ~~~~~g~~vlV~g~g~vG~~~~~la~~-~~g~~v~~~~~~~~~~~~~~~----~g-~~~v~~~~~~~~~~~~v~~~~~~~ 231 (338)
T PRK09422 158 SGIKPGQWIAIYGAGGLGNLALQYAKN-VFNAKVIAVDINDDKLALAKE----VG-ADLTINSKRVEDVAKIIQEKTGGA 231 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHH-hCCCeEEEEeCChHHHHHHHH----cC-CcEEecccccccHHHHHHHhcCCC
Confidence 345788999999999999999999982 348999999999998777754 45 211111110 111 1111112357
Q ss_pred cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
|.++.+..- ...++...+.++++|.++.-.
T Consensus 232 d~vi~~~~~-------~~~~~~~~~~l~~~G~~v~~g 261 (338)
T PRK09422 232 HAAVVTAVA-------KAAFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred cEEEEeCCC-------HHHHHHHHHhccCCCEEEEEe
Confidence 866655431 245788899999999988643
No 335
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.13 E-value=0.12 Score=45.93 Aligned_cols=149 Identities=17% Similarity=0.212 Sum_probs=97.3
Q ss_pred hhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEec
Q 036061 113 VKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCD 192 (284)
Q Consensus 113 ~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D 192 (284)
-+|+-.-...|..+.+.++++||-+|.-+ |.|.-.++. ..+...|.+++.|+.....--.++++- .+|-=+-+|
T Consensus 59 SKLaAaIl~Gl~~~pi~~g~~VLYLGAas-GTTvSHVSD-Iv~~G~iYaVEfs~R~~reLl~~a~~R----~Ni~PIL~D 132 (231)
T COG1889 59 SKLAAAILKGLKNFPIKEGSKVLYLGAAS-GTTVSHVSD-IVGEGRIYAVEFSPRPMRELLDVAEKR----PNIIPILED 132 (231)
T ss_pred hHHHHHHHcCcccCCcCCCCEEEEeeccC-CCcHhHHHh-ccCCCcEEEEEecchhHHHHHHHHHhC----CCceeeecc
Confidence 45666666666666789999999999964 788888887 444688999999998876666666553 367778889
Q ss_pred cccccccC----CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe-cCcc------ccccCccCCCccCCCcE
Q 036061 193 IMQVKEKL----GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS-AKGA------RAFLYPVVEKHDLLDFE 261 (284)
Q Consensus 193 ~~~~~~~~----~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~-~~gl------r~~lYp~v~~~dl~gfe 261 (284)
+.. |... ...|+||.+..- +.+-.=+..+....||+||.+++.- +.+. +..+-..++...-.||+
T Consensus 133 A~~-P~~Y~~~Ve~VDviy~DVAQ---p~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~ 208 (231)
T COG1889 133 ARK-PEKYRHLVEKVDVIYQDVAQ---PNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFE 208 (231)
T ss_pred cCC-cHHhhhhcccccEEEEecCC---chHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCce
Confidence 863 4322 358999976442 2333445667789999999665533 2221 11111111111225799
Q ss_pred EEEEec--CCcc
Q 036061 262 LLSVFH--PTNE 271 (284)
Q Consensus 262 ~~~~~h--P~~~ 271 (284)
++.+.+ |..+
T Consensus 209 i~e~~~LePye~ 220 (231)
T COG1889 209 ILEVVDLEPYEK 220 (231)
T ss_pred eeEEeccCCccc
Confidence 999987 6654
No 336
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.13 E-value=0.084 Score=49.69 Aligned_cols=107 Identities=21% Similarity=0.244 Sum_probs=68.4
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHH-HHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAA-NDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~a-i~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~ 207 (284)
+.+.+|..||+|..|.+..++.....-..+++-+|++++. -..+..+.+... +..++.+..+|. .++.+.|+|+
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~-~~~~~~i~~~~~----~~~~~adivI 78 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVP-FTSPTKIYAGDY----SDCKDADLVV 78 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcc-ccCCeEEEeCCH----HHhCCCCEEE
Confidence 5678999999998887766654411222379999998774 567777776665 334566665543 2356789999
Q ss_pred ecccc----cCChHH----HHHHHHHHHhhc---CCCcEEEEEe
Q 036061 208 LAALV----GMSKEE----KVKIIKHIRKYM---KDGGVLLVRS 240 (284)
Q Consensus 208 ~aa~v----~~~~~~----k~~il~~l~~~l---~pGg~lv~r~ 240 (284)
+.+.+ +|+..+ -.++++++...+ .|.|++++-+
T Consensus 79 itag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 79 ITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 88765 444433 233444433333 4788877755
No 337
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=96.10 E-value=0.033 Score=51.11 Aligned_cols=98 Identities=17% Similarity=0.170 Sum_probs=65.7
Q ss_pred CCCCCCEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--cCCCc
Q 036061 127 GVVNPKKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--KLGEY 203 (284)
Q Consensus 127 ~~~~~~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--~~~~f 203 (284)
...++.+||..| +|++|..++.+|+ ..|++|++++.+++..+.+++ +| ...-+.....|..+... ..+.+
T Consensus 140 ~~~~g~~vlI~ga~g~vG~~aiqlA~--~~G~~vi~~~~s~~~~~~l~~----~G-a~~vi~~~~~~~~~~v~~~~~~gv 212 (329)
T cd08294 140 KPKAGETVVVNGAAGAVGSLVGQIAK--IKGCKVIGCAGSDDKVAWLKE----LG-FDAVFNYKTVSLEEALKEAAPDGI 212 (329)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHH----cC-CCEEEeCCCccHHHHHHHHCCCCc
Confidence 457889999999 6889999999999 468999999999887766655 56 22112222122211110 11369
Q ss_pred cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061 204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR 239 (284)
Q Consensus 204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r 239 (284)
|+|+-. ++ . ..++...+.++++|+++.-
T Consensus 213 d~vld~--~g---~---~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 213 DCYFDN--VG---G---EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred EEEEEC--CC---H---HHHHHHHHhhccCCEEEEE
Confidence 998843 22 1 3568889999999998764
No 338
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=96.09 E-value=0.037 Score=57.60 Aligned_cols=100 Identities=16% Similarity=0.084 Sum_probs=71.8
Q ss_pred CEEEEeccCCChhHHHH-HHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCC--------CCCeEEEEecccc
Q 036061 132 KKVAFVGSGPMPLTSIV-MAKNHLKSTHFDNFDIDEAANDVARQIVSS-------DIEF--------EKRMKFVTCDIMQ 195 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai~-LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~G~l--------~~~I~f~~~D~~~ 195 (284)
++|..||+|.+|-.-.. +|. ..|..|+.+|+|+++++.+++.+.+ .|.+ ..+|++. .|.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~--~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~-- 379 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTAT--KAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-TDY-- 379 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHH--HcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-CCh--
Confidence 58999999988765332 331 2689999999999999998766532 1211 1355543 222
Q ss_pred ccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 196 VKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 196 ~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
...++.|+|+-+. ..+.+-|.+++.++-++++|+.+|...+
T Consensus 380 --~~~~~adlViEav--~E~l~~K~~v~~~l~~~~~~~~ilasnT 420 (699)
T TIGR02440 380 --RGFKDVDIVIEAV--FEDLALKHQMVKDIEQECAAHTIFASNT 420 (699)
T ss_pred --HHhccCCEEEEec--cccHHHHHHHHHHHHhhCCCCcEEEeCC
Confidence 2356799999763 3456899999999999999998887755
No 339
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=96.06 E-value=0.026 Score=53.12 Aligned_cols=101 Identities=20% Similarity=0.189 Sum_probs=70.4
Q ss_pred CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-------CCCC--------CCeEEEEecccc
Q 036061 131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSD-------IEFE--------KRMKFVTCDIMQ 195 (284)
Q Consensus 131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-------G~l~--------~~I~f~~~D~~~ 195 (284)
-++|..||+|.+|-.=...+ +.-|..|+.+|+++++++.+++.+++. |.+. .++++. ++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~--A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~----~~ 76 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVF--ALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPT----TD 76 (307)
T ss_pred ccEEEEEcccchhHHHHHHH--hhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhcccc----Cc
Confidence 46899999998875422222 235699999999999999998877653 1010 111111 01
Q ss_pred ccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 196 VKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 196 ~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
...+++.|+|+-+.. .+.+-|.++++++-++.+|+++|...+
T Consensus 77 -~~~l~~~DlVIEAv~--E~levK~~vf~~l~~~~~~~aIlASNT 118 (307)
T COG1250 77 -LAALKDADLVIEAVV--EDLELKKQVFAELEALAKPDAILASNT 118 (307)
T ss_pred -hhHhccCCEEEEecc--ccHHHHHHHHHHHHhhcCCCcEEeecc
Confidence 114567899997644 356889999999999999999998766
No 340
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=96.06 E-value=0.058 Score=49.49 Aligned_cols=95 Identities=15% Similarity=0.127 Sum_probs=67.0
Q ss_pred hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCcc
Q 036061 125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYD 204 (284)
Q Consensus 125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD 204 (284)
.....++.+||-.|+|.+|..++.+|+ ..|.+|++++.+++..+.+++ +|. ...+.+ .+. .....+|
T Consensus 150 ~~~~~~g~~vlV~g~g~vg~~~~q~a~--~~G~~vi~~~~~~~~~~~~~~----~g~-~~~~~~-----~~~-~~~~~~d 216 (319)
T cd08242 150 QVPITPGDKVAVLGDGKLGLLIAQVLA--LTGPDVVLVGRHSEKLALARR----LGV-ETVLPD-----EAE-SEGGGFD 216 (319)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHH--HcCCeEEEEcCCHHHHHHHHH----cCC-cEEeCc-----ccc-ccCCCCC
Confidence 334578899999999999999999998 578899999999988777766 562 211111 111 1224699
Q ss_pred EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061 205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR 239 (284)
Q Consensus 205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r 239 (284)
+|+-...- ...++...+.++++|.++..
T Consensus 217 ~vid~~g~-------~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 217 VVVEATGS-------PSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred EEEECCCC-------hHHHHHHHHHhhcCCEEEEE
Confidence 99854321 23567778899999999873
No 341
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=96.04 E-value=0.039 Score=51.20 Aligned_cols=93 Identities=19% Similarity=0.131 Sum_probs=61.0
Q ss_pred CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061 131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA 210 (284)
Q Consensus 131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa 210 (284)
-.+|..+|.|-+|-+-....+.......|++.|.+....+.|.+ +| +.+. ..+.. ........|+|+++.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lg-v~d~----~~~~~-~~~~~~~aD~Vivav 72 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LG-VIDE----LTVAG-LAEAAAEADLVIVAV 72 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cC-cccc----cccch-hhhhcccCCEEEEec
Confidence 36899999998887644444433444556777777777666654 44 2221 11110 012335689999987
Q ss_pred cccCChHHHHHHHHHHHhhcCCCcEEE
Q 036061 211 LVGMSKEEKVKIIKHIRKYMKDGGVLL 237 (284)
Q Consensus 211 ~v~~~~~~k~~il~~l~~~l~pGg~lv 237 (284)
-+ ..-.++++++.+.++||..+.
T Consensus 73 Pi----~~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 73 PI----EATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred cH----HHHHHHHHHhcccCCCCCEEE
Confidence 66 677889999999999998764
No 342
>PRK10083 putative oxidoreductase; Provisional
Probab=96.04 E-value=0.042 Score=50.90 Aligned_cols=102 Identities=14% Similarity=0.080 Sum_probs=65.1
Q ss_pred cCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CCc
Q 036061 126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GEY 203 (284)
Q Consensus 126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~f 203 (284)
....++.+|+..|+|++|..++.+|++ ..|+ .|+++|.+++..+.+++ +| ...-+.....+..+..... .++
T Consensus 156 ~~~~~g~~vlI~g~g~vG~~~~~~a~~-~~G~~~v~~~~~~~~~~~~~~~----~G-a~~~i~~~~~~~~~~~~~~g~~~ 229 (339)
T PRK10083 156 TGPTEQDVALIYGAGPVGLTIVQVLKG-VYNVKAVIVADRIDERLALAKE----SG-ADWVINNAQEPLGEALEEKGIKP 229 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH-hCCCCEEEEEcCCHHHHHHHHH----hC-CcEEecCccccHHHHHhcCCCCC
Confidence 346788999999999999999999883 2366 48889999988777765 45 2111122111211111111 135
Q ss_pred cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
|+||-+..- ...+....+.|++||+++.-.
T Consensus 230 d~vid~~g~-------~~~~~~~~~~l~~~G~~v~~g 259 (339)
T PRK10083 230 TLIIDAACH-------PSILEEAVTLASPAARIVLMG 259 (339)
T ss_pred CEEEECCCC-------HHHHHHHHHHhhcCCEEEEEc
Confidence 677754321 135678889999999998754
No 343
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.02 E-value=0.072 Score=48.28 Aligned_cols=98 Identities=17% Similarity=0.230 Sum_probs=69.4
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCe-EEEEeccccccccC--CCcc
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRM-KFVTCDIMQVKEKL--GEYD 204 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I-~f~~~D~~~~~~~~--~~fD 204 (284)
..+++.+|||||-++|+|-.+|-+ .-.+|.++|..-.-+.+.-+ . ..|| .+...|+..+..+. +..|
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~---gAk~VyavDVG~~Ql~~kLR---~----d~rV~~~E~tN~r~l~~~~~~~~~d 146 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQR---GAKHVYAVDVGYGQLHWKLR---N----DPRVIVLERTNVRYLTPEDFTEKPD 146 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHc---CCcEEEEEEccCCccCHhHh---c----CCcEEEEecCChhhCCHHHcccCCC
Confidence 378899999999999999877754 45689999999766666544 1 2344 35556665544321 2467
Q ss_pred EEEecc-cccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 205 CIFLAA-LVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 205 ~V~~aa-~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+++.+. ++ .-..+|..+...++||+-++..-
T Consensus 147 ~~v~DvSFI-----SL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 147 LIVIDVSFI-----SLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred eEEEEeehh-----hHHHHHHHHHHhcCCCceEEEEe
Confidence 877664 33 33579999999999999887754
No 344
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=95.97 E-value=0.0079 Score=59.33 Aligned_cols=108 Identities=18% Similarity=0.150 Sum_probs=77.7
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-------cCC
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-------KLG 201 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-------~~~ 201 (284)
..+.++|.||=|.+++.+..... +|..++|++++||++++.|++++.-.- .+|.+.+..|+.+... +..
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~--~p~~~i~~ve~dP~~l~va~q~f~f~q--~~r~~V~i~dGl~~~~~~~k~~~~~~ 369 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMS--LPKFQITAVEIDPEMLEVATQYFGFMQ--SDRNKVHIADGLDFLQRTAKSQQEDI 369 (482)
T ss_pred cccCcEEEEecCCCccccceeee--cCccceeEEEEChhHhhccHhhhchhh--hhhhhhhHhhchHHHHHHhhcccccc
Confidence 34567777777766666655443 788999999999999999999887554 2467778888865432 223
Q ss_pred CccEEEeccc----ccCChHH----HHHHHHHHHhhcCCCcEEEEEe
Q 036061 202 EYDCIFLAAL----VGMSKEE----KVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 202 ~fD~V~~aa~----v~~~~~~----k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.||+++++.. .||..++ -..++..+...+.|-|.+++.-
T Consensus 370 ~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inl 416 (482)
T KOG2352|consen 370 CPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINL 416 (482)
T ss_pred CCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEE
Confidence 6999997642 2443222 3678899999999999998854
No 345
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.93 E-value=0.061 Score=49.32 Aligned_cols=96 Identities=14% Similarity=0.118 Sum_probs=56.9
Q ss_pred CEEEEeccCCChhHH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-C-CCCeEEEEeccccccccCCCccEEEe
Q 036061 132 KKVAFVGSGPMPLTS-IVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE-F-EKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 132 ~~VL~IGsG~lp~ta-i~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~-l-~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
++|+.||+|.+|... ..|++ .|.+|+.+|.+++.++..++ .|. + ....... ....+-+.....+|+||+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~---~g~~V~~~~r~~~~~~~~~~----~g~~~~~~~~~~~-~~~~~~~~~~~~~d~vil 72 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQ---AGHDVTLVARRGAHLDALNE----NGLRLEDGEITVP-VLAADDPAELGPQDLVIL 72 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHh---CCCeEEEEECChHHHHHHHH----cCCcccCCceeec-ccCCCChhHcCCCCEEEE
Confidence 479999999877542 22333 67899999998876654443 241 0 0111110 001111112357999997
Q ss_pred cccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061 209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVR 239 (284)
Q Consensus 209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r 239 (284)
+.-. .+-..+++.+.+.+.++..++.-
T Consensus 73 a~k~----~~~~~~~~~l~~~l~~~~~iv~~ 99 (304)
T PRK06522 73 AVKA----YQLPAALPSLAPLLGPDTPVLFL 99 (304)
T ss_pred eccc----ccHHHHHHHHhhhcCCCCEEEEe
Confidence 6432 34567888999988888766543
No 346
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=95.90 E-value=0.045 Score=51.32 Aligned_cols=98 Identities=18% Similarity=0.110 Sum_probs=57.5
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
.++++|+.||+|++|.......+ ...+.+|+.+|++++.. ++++.+.|. ..+. ..++.....++|+||.
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~-~~g~~~V~v~~r~~~ra---~~la~~~g~-----~~~~--~~~~~~~l~~aDvVi~ 244 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLA-AKGVAEITIANRTYERA---EELAKELGG-----NAVP--LDELLELLNEADVVIS 244 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHH-HcCCCEEEEEeCCHHHH---HHHHHHcCC-----eEEe--HHHHHHHHhcCCEEEE
Confidence 47899999999988876555544 12346799999997643 334444552 2221 1122233456899997
Q ss_pred cccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
+.... .. ..++..+.+....++.+++.-+
T Consensus 245 at~~~---~~-~~~~~~~~~~~~~~~~~viDla 273 (311)
T cd05213 245 ATGAP---HY-AKIVERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred CCCCC---ch-HHHHHHHHhhCCCCCeEEEEeC
Confidence 65431 11 3444554444333567777654
No 347
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=95.89 E-value=0.12 Score=47.59 Aligned_cols=98 Identities=14% Similarity=0.115 Sum_probs=65.1
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI 206 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V 206 (284)
...++.+||..|+|.+|..++.+|+ ..|.+|++++.+++..+.+++ .|. ..-+.....+... ...+.+|+|
T Consensus 159 ~~~~~~~vlI~g~g~iG~~~~~~a~--~~G~~v~~~~~~~~~~~~~~~----~g~-~~~~~~~~~~~~~--~~~~~~d~v 229 (330)
T cd08245 159 GPRPGERVAVLGIGGLGHLAVQYAR--AMGFETVAITRSPDKRELARK----LGA-DEVVDSGAELDEQ--AAAGGADVI 229 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHH----hCC-cEEeccCCcchHH--hccCCCCEE
Confidence 4577889999999989998888988 468899999999988766643 441 1111111111110 011369999
Q ss_pred EecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+....- ...+..+.+.|+++|.++.-.
T Consensus 230 i~~~~~-------~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 230 LVTVVS-------GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred EECCCc-------HHHHHHHHHhcccCCEEEEEC
Confidence 854221 135678889999999988754
No 348
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.86 E-value=0.11 Score=51.82 Aligned_cols=105 Identities=16% Similarity=0.113 Sum_probs=66.2
Q ss_pred CEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHH---HhcCC-------CCCCeEEEEeccccccccC
Q 036061 132 KKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIV---SSDIE-------FEKRMKFVTCDIMQVKEKL 200 (284)
Q Consensus 132 ~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~---~~~G~-------l~~~I~f~~~D~~~~~~~~ 200 (284)
++|..||+|-+|++ |..||+ ...|.+|+++|+|++-++.-++-. ..-|. ...+.+|. .|.. ...
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~-~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t-~~~~---~~i 76 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIAL-KCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFS-TDVE---KHV 76 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHh-cCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEE-cCHH---HHH
Confidence 58999999966654 455665 334788999999999988743311 01110 01223332 2221 123
Q ss_pred CCccEEEecccccC-----------ChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 201 GEYDCIFLAALVGM-----------SKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 201 ~~fD~V~~aa~v~~-----------~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
...|++|++..... +...-..+.+.+.+++++|.+++++|.
T Consensus 77 ~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~ST 128 (473)
T PLN02353 77 AEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (473)
T ss_pred hcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCC
Confidence 46799988753211 223457889999999999999999883
No 349
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.86 E-value=0.0047 Score=61.13 Aligned_cols=101 Identities=11% Similarity=0.156 Sum_probs=62.2
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEE---EeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDN---FDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC 205 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~---iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~ 205 (284)
..-+.+||||||...+.|-++.+ +..+.. -|-.+..++.|.+ -|. -.-+... +. ..++++.+.||+
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r----~V~t~s~a~~d~~~~qvqfale----RGv-pa~~~~~-~s-~rLPfp~~~fDm 184 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLER----NVTTMSFAPNDEHEAQVQFALE----RGV-PAMIGVL-GS-QRLPFPSNAFDM 184 (506)
T ss_pred CceEEEEeccceeehhHHHHhhC----CceEEEcccccCCchhhhhhhh----cCc-chhhhhh-cc-ccccCCccchhh
Confidence 33468999999987776665543 333322 2444444544443 341 1111111 11 346777778999
Q ss_pred EEecc-cccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 206 IFLAA-LVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 206 V~~aa-~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
|-.+. ++.+...+ .-+|-++-|+|+|||.+++...
T Consensus 185 vHcsrc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 185 VHCSRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred hhcccccccchhcc-cceeehhhhhhccCceEEecCC
Confidence 98665 55665443 4688999999999999998763
No 350
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=95.81 E-value=0.065 Score=50.28 Aligned_cols=97 Identities=15% Similarity=0.154 Sum_probs=64.7
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEec-------cccccccC
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCD-------IMQVKEKL 200 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D-------~~~~~~~~ 200 (284)
.++.+||..|+|++|..++.+|+ ..|+ +|++++.+++..+.++ ++| ...-+.....+ +.+.. +.
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak--~~G~~~v~~~~~~~~~~~~~~----~~g-~~~vi~~~~~~~~~~~~~i~~~~-~~ 247 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAK--LAGARRVIVIDGSPERLELAR----EFG-ADATIDIDELPDPQRRAIVRDIT-GG 247 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH--HcCCCeEEEEcCCHHHHHHHH----HcC-CCeEEcCcccccHHHHHHHHHHh-CC
Confidence 47889999999999999999999 3678 9999999988766554 456 22111111111 11111 12
Q ss_pred CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
..+|+|+-...- ...+....+.++++|.++.-.
T Consensus 248 ~~~d~vid~~g~-------~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 248 RGADVVIEASGH-------PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CCCcEEEECCCC-------hHHHHHHHHHhccCCEEEEEc
Confidence 369999854321 235677888999999998654
No 351
>PRK08507 prephenate dehydrogenase; Validated
Probab=95.79 E-value=0.059 Score=49.31 Aligned_cols=86 Identities=19% Similarity=0.222 Sum_probs=54.5
Q ss_pred EEEEeccCCChhHHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEeccc
Q 036061 133 KVAFVGSGPMPLTSI-VMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAAL 211 (284)
Q Consensus 133 ~VL~IGsG~lp~tai-~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~ 211 (284)
+|.+||+|.+|.+-. .|.+ .....+|+++|++++..+.++ +.|. .+. ..+..+ ..+.|+||++.-
T Consensus 2 ~I~iIG~G~mG~sla~~l~~-~g~~~~v~~~d~~~~~~~~~~----~~g~-~~~----~~~~~~----~~~aD~Vilavp 67 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKE-KGLISKVYGYDHNELHLKKAL----ELGL-VDE----IVSFEE----LKKCDVIFLAIP 67 (275)
T ss_pred EEEEEccCHHHHHHHHHHHh-cCCCCEEEEEcCCHHHHHHHH----HCCC-Ccc----cCCHHH----HhcCCEEEEeCc
Confidence 799999998776422 2222 112247999999999877654 3552 211 122222 124899998754
Q ss_pred ccCChHHHHHHHHHHHhhcCCCcEEE
Q 036061 212 VGMSKEEKVKIIKHIRKYMKDGGVLL 237 (284)
Q Consensus 212 v~~~~~~k~~il~~l~~~l~pGg~lv 237 (284)
. ..-.+++.++.. +++|.+++
T Consensus 68 ~----~~~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 68 V----DAIIEILPKLLD-IKENTTII 88 (275)
T ss_pred H----HHHHHHHHHHhc-cCCCCEEE
Confidence 3 556678888888 88887554
No 352
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.76 E-value=0.046 Score=49.52 Aligned_cols=122 Identities=17% Similarity=0.180 Sum_probs=75.5
Q ss_pred hhhHHHHHHhcCCCCcccccc-cCCCcchhhhhhHHHHHHHHhcC---CCCCCEEEEeccCCChhHHHHHHhhcCCCcEE
Q 036061 84 LLELEFATFFAKTPQPLNNLN-LFPYYGNYVKLANLEYRILDENG---VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHF 159 (284)
Q Consensus 84 ~lE~~~a~~l~~~~~p~~~L~-~fpy~~ny~~l~~~E~~~l~~~~---~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V 159 (284)
+|-.+|+-+- -+.|-..|. .-|.-..|+.-+. .+|.+.. +.+.-++||||.|+--+=. |--.+..|+++
T Consensus 33 lL~~fY~v~~--wdiPeg~LCPpvPgRAdYih~la---DLL~s~~g~~~~~~i~~LDIGvGAnCIYP--liG~~eYgwrf 105 (292)
T COG3129 33 LLAHFYAVRY--WDIPEGFLCPPVPGRADYIHHLA---DLLASTSGQIPGKNIRILDIGVGANCIYP--LIGVHEYGWRF 105 (292)
T ss_pred HHHHhcceeE--ecCCCCCcCCCCCChhHHHHHHH---HHHHhcCCCCCcCceEEEeeccCcccccc--cccceeeccee
Confidence 3444554331 144555554 2366666755443 3333332 2466799999999421111 11124679999
Q ss_pred EEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc-----cCCCccEEEecccc
Q 036061 160 DNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE-----KLGEYDCIFLAALV 212 (284)
Q Consensus 160 ~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~-----~~~~fD~V~~aa~v 212 (284)
||-|||+.+++.|+.++.....++..|+.....-.+..+ ....||++..+.-.
T Consensus 106 vGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPF 163 (292)
T COG3129 106 VGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPF 163 (292)
T ss_pred ecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeEecCCCc
Confidence 999999999999999999883388889886543332222 13469999877644
No 353
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.69 E-value=0.12 Score=48.36 Aligned_cols=101 Identities=25% Similarity=0.303 Sum_probs=64.2
Q ss_pred CEEEEeccCCChhHHHHHHhhcCCC--cEEEEEeCChHHHH-HHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 132 KKVAFVGSGPMPLTSIVMAKNHLKS--THFDNFDIDEAAND-VARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai~LA~~~~~g--~~V~~iDid~~ai~-~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
++|..||+|..|.+...... ..| .+|+.+|++++..+ .|..+..... ......+..+|. .+..+.|+|++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~--~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~-~~~~~~i~~~d~----~~l~~aDiVii 73 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALL--LRGLASEIVLVDINKAKAEGEAMDLAHGTP-FVKPVRIYAGDY----ADCKGADVVVI 73 (308)
T ss_pred CEEEEECCCHHHHHHHHHHH--HcCCCCEEEEEECCchhhhhHHHHHHcccc-ccCCeEEeeCCH----HHhCCCCEEEE
Confidence 37999999988877665443 244 68999999988665 5666555543 223345445553 23567899998
Q ss_pred ccccc----CChHH--------HHHHHHHHHhhcCCCcEEEEEe
Q 036061 209 AALVG----MSKEE--------KVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 209 aa~v~----~~~~~--------k~~il~~l~~~l~pGg~lv~r~ 240 (284)
++..+ ++..+ -.++.+.+.++ .|.|.+++.+
T Consensus 74 ta~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~-~~~giiiv~t 116 (308)
T cd05292 74 TAGANQKPGETRLDLLKRNVAIFKEIIPQILKY-APDAILLVVT 116 (308)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence 87653 22211 24555666654 5778877764
No 354
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.68 E-value=0.046 Score=50.26 Aligned_cols=94 Identities=14% Similarity=0.132 Sum_probs=54.6
Q ss_pred CEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC----CCCCeEEEEecc-ccccccCCCccE
Q 036061 132 KKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE----FEKRMKFVTCDI-MQVKEKLGEYDC 205 (284)
Q Consensus 132 ~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~----l~~~I~f~~~D~-~~~~~~~~~fD~ 205 (284)
++|+.||+|.+|.. +..|++ .|..|+.++. ++.++..++ .|. ...+..+ .... .+.......+|+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~---~g~~V~~~~r-~~~~~~~~~----~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~ 71 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLE---AGRDVTFLVR-PKRAKALRE----RGLVIRSDHGDAVV-PGPVITDPEELTGPFDL 71 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHH---CCCceEEEec-HHHHHHHHh----CCeEEEeCCCeEEe-cceeecCHHHccCCCCE
Confidence 47999999988764 333444 5789999999 665554332 331 0001111 0001 111111257999
Q ss_pred EEecccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061 206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLV 238 (284)
Q Consensus 206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~ 238 (284)
||++.-- ..-..+++.+...+.++..++.
T Consensus 72 vilavk~----~~~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 72 VILAVKA----YQLDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred EEEEecc----cCHHHHHHHHHhhcCCCCEEEE
Confidence 9986432 3446688888888888876554
No 355
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=95.67 E-value=0.012 Score=57.59 Aligned_cols=100 Identities=25% Similarity=0.333 Sum_probs=59.5
Q ss_pred EEEEeccCCChhHHHH---HHhh-cCCCcEEEEEeCChHHHHHHHHHHHhc-CCCCCCeEEE-EeccccccccCCCccEE
Q 036061 133 KVAFVGSGPMPLTSIV---MAKN-HLKSTHFDNFDIDEAANDVARQIVSSD-IEFEKRMKFV-TCDIMQVKEKLGEYDCI 206 (284)
Q Consensus 133 ~VL~IGsG~lp~tai~---LA~~-~~~g~~V~~iDid~~ai~~Ar~~~~~~-G~l~~~I~f~-~~D~~~~~~~~~~fD~V 206 (284)
+|..||+|.+|.+... ++.. ...|.+|+-+|+|++.++...+.+++. .......++. +.|.. ..+.+.|+|
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~---eal~~AD~V 78 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRR---EALDGADFV 78 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHH---HHhcCCCEE
Confidence 7999999988877444 4422 356789999999999888776655432 0011223443 44532 334578999
Q ss_pred EecccccCC--------hHHHHHHHHHHHhhcCCCcE
Q 036061 207 FLAALVGMS--------KEEKVKIIKHIRKYMKDGGV 235 (284)
Q Consensus 207 ~~aa~v~~~--------~~~k~~il~~l~~~l~pGg~ 235 (284)
+.+..++.. .+.|..+++++.+.+.|||.
T Consensus 79 i~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi 115 (423)
T cd05297 79 INTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGI 115 (423)
T ss_pred EEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHH
Confidence 988764221 12344444444445555543
No 356
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.66 E-value=0.043 Score=51.49 Aligned_cols=100 Identities=9% Similarity=0.130 Sum_probs=56.5
Q ss_pred CEEEEeccCCChhHH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-C----CCCeEEEEec--cccccccCCCc
Q 036061 132 KKVAFVGSGPMPLTS-IVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE-F----EKRMKFVTCD--IMQVKEKLGEY 203 (284)
Q Consensus 132 ~~VL~IGsG~lp~ta-i~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~-l----~~~I~f~~~D--~~~~~~~~~~f 203 (284)
++|.+||+|.+|..- ..|++ .|.+|+.+|.++.. +. +++.|. . ..+....... ..+-......+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~---~G~~V~~~~r~~~~-~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAA---AGADVTLIGRARIG-DE----LRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATA 74 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHh---cCCcEEEEecHHHH-HH----HHhcCceeecCCCcceecccceeEeccChhhccCC
Confidence 589999999877543 33333 68899999997532 22 223331 0 0011110000 00011233579
Q ss_pred cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCcc
Q 036061 204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGA 244 (284)
Q Consensus 204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~gl 244 (284)
|+||++.-. .+..++++.+.+.++++..++.- .+|+
T Consensus 75 D~vil~vk~----~~~~~~~~~l~~~~~~~~iii~~-~nG~ 110 (341)
T PRK08229 75 DLVLVTVKS----AATADAAAALAGHARPGAVVVSF-QNGV 110 (341)
T ss_pred CEEEEEecC----cchHHHHHHHHhhCCCCCEEEEe-CCCC
Confidence 999976432 45567889999998888765433 3454
No 357
>PTZ00117 malate dehydrogenase; Provisional
Probab=95.65 E-value=0.088 Score=49.62 Aligned_cols=102 Identities=12% Similarity=0.234 Sum_probs=62.8
Q ss_pred CCCEEEEeccCCChhHHHHHHhhcCCC-cEEEEEeCChHHHHHHHHH--HHhcCCCCCCeEEEE-eccccccccCCCccE
Q 036061 130 NPKKVAFVGSGPMPLTSIVMAKNHLKS-THFDNFDIDEAANDVARQI--VSSDIEFEKRMKFVT-CDIMQVKEKLGEYDC 205 (284)
Q Consensus 130 ~~~~VL~IGsG~lp~tai~LA~~~~~g-~~V~~iDid~~ai~~Ar~~--~~~~G~l~~~I~f~~-~D~~~~~~~~~~fD~ 205 (284)
+..+|..||+|.+|.+...++. ..| +.++-+|++++..+ +..+ ...........++.. +|. . .+.+.|+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~--~~~~~~l~L~Di~~~~~~-g~~lDl~~~~~~~~~~~~i~~~~d~---~-~l~~ADi 76 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLIL--QKNLGDVVLYDVIKGVPQ-GKALDLKHFSTLVGSNINILGTNNY---E-DIKDSDV 76 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHH--HCCCCeEEEEECCCccch-hHHHHHhhhccccCCCeEEEeCCCH---H-HhCCCCE
Confidence 4579999999998888666554 234 68999999987644 3332 111111122344443 342 2 4567899
Q ss_pred EEecccccCCh------------HHHHHHHHHHHhhcCCCcEEEEE
Q 036061 206 IFLAALVGMSK------------EEKVKIIKHIRKYMKDGGVLLVR 239 (284)
Q Consensus 206 V~~aa~v~~~~------------~~k~~il~~l~~~l~pGg~lv~r 239 (284)
|++.+.++... +-+.++.+.+.++ .|.+++++-
T Consensus 77 VVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~vivv 121 (319)
T PTZ00117 77 VVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICV 121 (319)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEe
Confidence 99888653222 3356777777777 577755553
No 358
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=95.64 E-value=0.0065 Score=48.51 Aligned_cols=85 Identities=15% Similarity=0.129 Sum_probs=58.4
Q ss_pred ChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccc---ccccc---CCCccEEEecccccCC
Q 036061 142 MPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIM---QVKEK---LGEYDCIFLAALVGMS 215 (284)
Q Consensus 142 lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~---~~~~~---~~~fD~V~~aa~v~~~ 215 (284)
+|+.++.+|++ .|++|+++|.+++..+.+++ +|. . .++..+-. +.... ...+|+||.+...
T Consensus 2 vG~~a~q~ak~--~G~~vi~~~~~~~k~~~~~~----~Ga---~-~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~--- 68 (130)
T PF00107_consen 2 VGLMAIQLAKA--MGAKVIATDRSEEKLELAKE----LGA---D-HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS--- 68 (130)
T ss_dssp HHHHHHHHHHH--TTSEEEEEESSHHHHHHHHH----TTE---S-EEEETTTSSHHHHHHHHTTTSSEEEEEESSSS---
T ss_pred hHHHHHHHHHH--cCCEEEEEECCHHHHHHHHh----hcc---c-ccccccccccccccccccccccceEEEEecCc---
Confidence 57889999993 56999999999998777765 452 1 22222211 11111 1369999976553
Q ss_pred hHHHHHHHHHHHhhcCCCcEEEEEecCc
Q 036061 216 KEEKVKIIKHIRKYMKDGGVLLVRSAKG 243 (284)
Q Consensus 216 ~~~k~~il~~l~~~l~pGg~lv~r~~~g 243 (284)
...++...+.++|||++++-...+
T Consensus 69 ----~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 69 ----GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp ----HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ----HHHHHHHHHHhccCCEEEEEEccC
Confidence 357889999999999999987544
No 359
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=95.53 E-value=0.17 Score=46.47 Aligned_cols=94 Identities=15% Similarity=0.214 Sum_probs=65.7
Q ss_pred cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061 126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC 205 (284)
Q Consensus 126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~ 205 (284)
....++.+||..|+|++|..++.+|+ ..|.+|++++.+++..+.++ ..|. . .++..+ +. ..+.+|+
T Consensus 163 ~~~~~~~~vlV~g~g~vg~~~~~la~--~~g~~v~~~~~~~~~~~~~~----~~g~-~---~~~~~~--~~--~~~~vD~ 228 (329)
T cd08298 163 AGLKPGQRLGLYGFGASAHLALQIAR--YQGAEVFAFTRSGEHQELAR----ELGA-D---WAGDSD--DL--PPEPLDA 228 (329)
T ss_pred hCCCCCCEEEEECCcHHHHHHHHHHH--HCCCeEEEEcCChHHHHHHH----HhCC-c---EEeccC--cc--CCCcccE
Confidence 34577889999999999999999998 46899999999987665553 4562 1 111111 11 1235898
Q ss_pred EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
++..... ...++.+.+.|++||+++.-.
T Consensus 229 vi~~~~~-------~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 229 AIIFAPV-------GALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred EEEcCCc-------HHHHHHHHHHhhcCCEEEEEc
Confidence 8754322 246889999999999998754
No 360
>PLN02256 arogenate dehydrogenase
Probab=95.52 E-value=0.12 Score=48.57 Aligned_cols=100 Identities=13% Similarity=0.084 Sum_probs=60.3
Q ss_pred hhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe
Q 036061 112 YVKLANLEYRILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC 191 (284)
Q Consensus 112 y~~l~~~E~~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~ 191 (284)
|+.-.+.|.+ .....+|..||+|.+|-+-....+ ..|.+|+++|.++. . +.+...|. .+ ..
T Consensus 23 ~~~~~~~~~~------~~~~~kI~IIG~G~mG~slA~~L~--~~G~~V~~~d~~~~-~----~~a~~~gv-----~~-~~ 83 (304)
T PLN02256 23 YESRLQEELE------KSRKLKIGIVGFGNFGQFLAKTFV--KQGHTVLATSRSDY-S----DIAAELGV-----SF-FR 83 (304)
T ss_pred hHhHHhHhhc------cCCCCEEEEEeeCHHHHHHHHHHH--hCCCEEEEEECccH-H----HHHHHcCC-----ee-eC
Confidence 3555555532 356689999999977664222222 25679999999963 2 33334562 22 23
Q ss_pred ccccccccCCCccEEEecccccCChHHHHHHHHHH-HhhcCCCcEE
Q 036061 192 DIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHI-RKYMKDGGVL 236 (284)
Q Consensus 192 D~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l-~~~l~pGg~l 236 (284)
|..++.. .+.|+|+++.-. ..-.++++++ ...++||.++
T Consensus 84 ~~~e~~~--~~aDvVilavp~----~~~~~vl~~l~~~~l~~~~iv 123 (304)
T PLN02256 84 DPDDFCE--EHPDVVLLCTSI----LSTEAVLRSLPLQRLKRSTLF 123 (304)
T ss_pred CHHHHhh--CCCCEEEEecCH----HHHHHHHHhhhhhccCCCCEE
Confidence 3332211 357999987554 4556778888 5678888754
No 361
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.52 E-value=0.12 Score=48.74 Aligned_cols=104 Identities=19% Similarity=0.258 Sum_probs=62.4
Q ss_pred CCCEEEEeccCCChhHHHHHHhhcCCC-cEEEEEeCChHHH-HHHHHHHHhcCCCCCCeEEEE-eccccccccCCCccEE
Q 036061 130 NPKKVAFVGSGPMPLTSIVMAKNHLKS-THFDNFDIDEAAN-DVARQIVSSDIEFEKRMKFVT-CDIMQVKEKLGEYDCI 206 (284)
Q Consensus 130 ~~~~VL~IGsG~lp~tai~LA~~~~~g-~~V~~iDid~~ai-~~Ar~~~~~~G~l~~~I~f~~-~D~~~~~~~~~~fD~V 206 (284)
+..+|..||+|.+|.+....+. ..| ..++-+|++++.. ..+..+...........++.. +|. .++.+.|+|
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la--~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~----~~l~~aDiV 78 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIV--LKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY----EDIAGSDVV 78 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHH--hCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH----HHhCCCCEE
Confidence 3479999999988877655443 345 4799999999853 112222222221122345553 553 245678999
Q ss_pred Eeccccc----C-------------ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 207 FLAALVG----M-------------SKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 207 ~~aa~v~----~-------------~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+..+.++ + +.+-+.++.+.+.+.. |.|.+++-+
T Consensus 79 I~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~s 128 (321)
T PTZ00082 79 IVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVIT 128 (321)
T ss_pred EECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence 9876442 2 2233677777777775 666555543
No 362
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.51 E-value=0.088 Score=44.68 Aligned_cols=112 Identities=17% Similarity=0.082 Sum_probs=71.9
Q ss_pred hhhhHHHHHHHHhcCC-CCCCEEEEeccCCChhHHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE
Q 036061 113 VKLANLEYRILDENGV-VNPKKVAFVGSGPMPLTSIVMAKNHLKS-THFDNFDIDEAANDVARQIVSSDIEFEKRMKFVT 190 (284)
Q Consensus 113 ~~l~~~E~~~l~~~~~-~~~~~VL~IGsG~lp~tai~LA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~ 190 (284)
+.-.....+...++.. .+..+.+|+|||-+ - +.+|. +..| -.-+|++++|--+..+|-.+-+.| ++++.+|..
T Consensus 54 VpAtteQv~nVLSll~~n~~GklvDlGSGDG-R--iVlaa-ar~g~~~a~GvELNpwLVaysrl~a~R~g-~~k~trf~R 128 (199)
T KOG4058|consen 54 VPATTEQVENVLSLLRGNPKGKLVDLGSGDG-R--IVLAA-ARCGLRPAVGVELNPWLVAYSRLHAWRAG-CAKSTRFRR 128 (199)
T ss_pred cCccHHHHHHHHHHccCCCCCcEEeccCCCc-e--eehhh-hhhCCCcCCceeccHHHHHHHHHHHHHHh-cccchhhhh
Confidence 4444333333333333 45589999999963 2 33443 2344 567899999999999999999999 799999999
Q ss_pred eccccccccCCCccEE--EecccccCChHHHHHHHHHHHhhcCCCcEEE
Q 036061 191 CDIMQVKEKLGEYDCI--FLAALVGMSKEEKVKIIKHIRKYMKDGGVLL 237 (284)
Q Consensus 191 ~D~~~~~~~~~~fD~V--~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv 237 (284)
-|+ +..++.+|..| |.+-.+ -..+-..+..-|..+..++
T Consensus 129 kdl--wK~dl~dy~~vviFgaes~------m~dLe~KL~~E~p~nt~vv 169 (199)
T KOG4058|consen 129 KDL--WKVDLRDYRNVVIFGAESV------MPDLEDKLRTELPANTRVV 169 (199)
T ss_pred hhh--hhccccccceEEEeehHHH------HhhhHHHHHhhCcCCCeEE
Confidence 998 45566666544 333222 1223344555677777654
No 363
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=95.51 E-value=0.077 Score=49.43 Aligned_cols=101 Identities=20% Similarity=0.192 Sum_probs=66.7
Q ss_pred cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEec----cccccc--
Q 036061 126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCD----IMQVKE-- 198 (284)
Q Consensus 126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D----~~~~~~-- 198 (284)
....++.+||..|+|.+|..++.+|+ ..|.+ |+.++.+++..+.+++ +|. ..-+....-+ ..++..
T Consensus 158 ~~~~~g~~vlI~g~g~vG~~a~~lak--~~G~~~v~~~~~~~~~~~~~~~----~g~-~~vi~~~~~~~~~~~~~~~~~~ 230 (343)
T cd05285 158 AGVRPGDTVLVFGAGPIGLLTAAVAK--AFGATKVVVTDIDPSRLEFAKE----LGA-THTVNVRTEDTPESAEKIAELL 230 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHH--HcCCcEEEEECCCHHHHHHHHH----cCC-cEEeccccccchhHHHHHHHHh
Confidence 34678899999999999999999999 36777 9999999888776655 352 1111111111 111111
Q ss_pred cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 199 KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 199 ~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
....+|+|+-...- ...+....+.++++|+++.-.
T Consensus 231 ~~~~~d~vld~~g~-------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 231 GGKGPDVVIECTGA-------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCCCCEEEECCCC-------HHHHHHHHHHhhcCCEEEEEc
Confidence 12359999864331 126788899999999988643
No 364
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.50 E-value=0.12 Score=53.04 Aligned_cols=96 Identities=13% Similarity=0.050 Sum_probs=68.3
Q ss_pred CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc----ccCCCccEE
Q 036061 131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK----EKLGEYDCI 206 (284)
Q Consensus 131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~----~~~~~fD~V 206 (284)
..+|+-+|+|..|......-+ ..|..++.+|.|++.++.+++ .| ...+.||+++.. ...++.|.|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~--~~g~~vvvID~d~~~v~~~~~----~g-----~~v~~GDat~~~~L~~agi~~A~~v 468 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLL--SSGVKMTVLDHDPDHIETLRK----FG-----MKVFYGDATRMDLLESAGAAKAEVL 468 (621)
T ss_pred cCcEEEEecChHHHHHHHHHH--hCCCCEEEEECCHHHHHHHHh----cC-----CeEEEEeCCCHHHHHhcCCCcCCEE
Confidence 479999999998876433222 367899999999999998876 34 467889998642 233478888
Q ss_pred EecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
+.+.. ..+....+-...|.+.|...+++|..
T Consensus 469 vv~~~----d~~~n~~i~~~ar~~~p~~~iiaRa~ 499 (621)
T PRK03562 469 INAID----DPQTSLQLVELVKEHFPHLQIIARAR 499 (621)
T ss_pred EEEeC----CHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 75432 23444445556667789999999884
No 365
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=95.50 E-value=0.044 Score=50.64 Aligned_cols=96 Identities=14% Similarity=0.012 Sum_probs=60.6
Q ss_pred CCCEEEEe--ccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc---ccCCCcc
Q 036061 130 NPKKVAFV--GSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK---EKLGEYD 204 (284)
Q Consensus 130 ~~~~VL~I--GsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~---~~~~~fD 204 (284)
++.+++.+ |+|++|..++.+|+ ..|++|++++.+++..+.+++ +|. ..-+.....+..+.. .....+|
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~--~~G~~vi~~~~~~~~~~~~~~----~g~-~~~i~~~~~~~~~~v~~~~~~~~~d 214 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCK--ADGIKVINIVRRKEQVDLLKK----IGA-EYVLNSSDPDFLEDLKELIAKLNAT 214 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHH----cCC-cEEEECCCccHHHHHHHHhCCCCCc
Confidence 45566664 88999999999999 478999999999988777765 562 211111111211111 1113589
Q ss_pred EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+|+-+..- .......+.+++||+++.-.
T Consensus 215 ~vid~~g~--------~~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 215 IFFDAVGG--------GLTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred EEEECCCc--------HHHHHHHHhhCCCCEEEEEE
Confidence 99854321 12345677889999988754
No 366
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=95.49 E-value=0.03 Score=55.61 Aligned_cols=88 Identities=15% Similarity=0.054 Sum_probs=61.3
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
-.+++|+.||.|.+|......++ ..|++|+.+|+||.....|.. .|. ++ .+..+ .+...|+|+.
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~--a~Ga~ViV~e~dp~~a~~A~~----~G~-----~~--~~lee---ll~~ADIVI~ 315 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALR--GFGARVVVTEIDPICALQAAM----EGY-----QV--VTLED---VVETADIFVT 315 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCchhHHHHHh----cCc-----ee--ccHHH---HHhcCCEEEE
Confidence 57899999999998888777766 578999999999876543332 352 22 12222 2357899987
Q ss_pred cccccCChHHHHHHH-HHHHhhcCCCcEEEEE
Q 036061 209 AALVGMSKEEKVKII-KHIRKYMKDGGVLLVR 239 (284)
Q Consensus 209 aa~v~~~~~~k~~il-~~l~~~l~pGg~lv~r 239 (284)
+.. . ..++ .+..+.||||++|+--
T Consensus 316 atG------t-~~iI~~e~~~~MKpGAiLINv 340 (476)
T PTZ00075 316 ATG------N-KDIITLEHMRRMKNNAIVGNI 340 (476)
T ss_pred CCC------c-ccccCHHHHhccCCCcEEEEc
Confidence 642 1 2344 4777899999998664
No 367
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=95.46 E-value=0.14 Score=47.67 Aligned_cols=100 Identities=22% Similarity=0.262 Sum_probs=66.5
Q ss_pred HhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccc-cccCCC
Q 036061 124 DENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQV-KEKLGE 202 (284)
Q Consensus 124 ~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~-~~~~~~ 202 (284)
.+....++.+|+..|+|++|..++.+|+ ..|.+|.+++.+++..+.+++ +|. +.+ +...+ .+. ....+.
T Consensus 163 ~~~~~~~g~~vlV~g~g~vG~~~~~~a~--~~G~~v~~~~~~~~~~~~~~~----~g~--~~v-i~~~~-~~~~~~~~~~ 232 (337)
T cd05283 163 KRNGVGPGKRVGVVGIGGLGHLAVKFAK--ALGAEVTAFSRSPSKKEDALK----LGA--DEF-IATKD-PEAMKKAAGS 232 (337)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHH--HcCCeEEEEcCCHHHHHHHHH----cCC--cEE-ecCcc-hhhhhhccCC
Confidence 3445678899999999999999999998 468899999999888777653 442 111 11111 111 111246
Q ss_pred ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+|+|+..... . ..+....+.|+++|.++.-.
T Consensus 233 ~d~v~~~~g~----~---~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 233 LDLIIDTVSA----S---HDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred ceEEEECCCC----c---chHHHHHHHhcCCCEEEEEe
Confidence 9999854331 1 23577888999999988754
No 368
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=95.45 E-value=0.089 Score=48.89 Aligned_cols=99 Identities=20% Similarity=0.258 Sum_probs=66.8
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecc----ccccccCC
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKS-THFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDI----MQVKEKLG 201 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~----~~~~~~~~ 201 (284)
...++.+||..|+|.+|..++.+|+ ..| .+|+++|.+++..+.+++ +| ...-+.....+. .+.. ...
T Consensus 163 ~~~~g~~vlI~g~g~~g~~~~~~a~--~~G~~~v~~~~~~~~~~~~~~~----~g-~~~~v~~~~~~~~~~i~~~~-~~~ 234 (345)
T cd08286 163 KVKPGDTVAIVGAGPVGLAALLTAQ--LYSPSKIIMVDLDDNRLEVAKK----LG-ATHTVNSAKGDAIEQVLELT-DGR 234 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHH--HcCCCeEEEEcCCHHHHHHHHH----hC-CCceeccccccHHHHHHHHh-CCC
Confidence 4577899999999999999999998 457 789999999887666654 45 222223322221 1111 123
Q ss_pred CccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 202 EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 202 ~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.+|+|+-+... ...++.+.+.|+++|+++.-.
T Consensus 235 ~~d~vld~~g~-------~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 235 GVDVVIEAVGI-------PATFELCQELVAPGGHIANVG 266 (345)
T ss_pred CCCEEEECCCC-------HHHHHHHHHhccCCcEEEEec
Confidence 69999854321 125788889999999998654
No 369
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.43 E-value=0.27 Score=46.29 Aligned_cols=105 Identities=21% Similarity=0.193 Sum_probs=68.1
Q ss_pred CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChH-HHHHHHHHHHhcCCCCCCeEEEE-eccccccccCCCccEEE
Q 036061 130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEA-ANDVARQIVSSDIEFEKRMKFVT-CDIMQVKEKLGEYDCIF 207 (284)
Q Consensus 130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~-ai~~Ar~~~~~~G~l~~~I~f~~-~D~~~~~~~~~~fD~V~ 207 (284)
+..+|..||+|..|.+..+..........++-+|++++ +-..+..+-..... .....+.. +|.. ++.+.|+|+
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~-~~~~~v~~~~dy~----~~~~adivv 76 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAF-LKNPKIEADKDYS----VTANSKVVI 76 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhcc-CCCCEEEECCCHH----HhCCCCEEE
Confidence 34699999999999887665542344567999999876 44666666666542 22234443 5543 356789999
Q ss_pred ecccc----cCChHH--------HHHHHHHHHhhcCCCcEEEEEe
Q 036061 208 LAALV----GMSKEE--------KVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 208 ~aa~v----~~~~~~--------k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+.+.. +|+..+ -.++.+.+.++ .|.|.+++-+
T Consensus 77 itaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvs 120 (312)
T cd05293 77 VTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVS 120 (312)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEcc
Confidence 87654 444322 24566666666 7888877755
No 370
>PRK08655 prephenate dehydrogenase; Provisional
Probab=95.42 E-value=0.085 Score=51.88 Aligned_cols=91 Identities=14% Similarity=0.211 Sum_probs=58.2
Q ss_pred CEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061 132 KKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA 210 (284)
Q Consensus 132 ~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa 210 (284)
++|+.|| +|.+|.+.....+ ..|.+|+++|.+++.. .+.+...|. .+ ..|.. ......|+||++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~--~~G~~V~v~~r~~~~~---~~~a~~~gv-----~~-~~~~~---e~~~~aDvVIlav 66 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLK--EKGFEVIVTGRDPKKG---KEVAKELGV-----EY-ANDNI---DAAKDADIVIISV 66 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHH--HCCCEEEEEECChHHH---HHHHHHcCC-----ee-ccCHH---HHhccCCEEEEec
Confidence 4799998 7877765333322 3678999999998764 233334552 22 22322 2234689999876
Q ss_pred cccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 211 LVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 211 ~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
-+ ..-..+++.+...++||.+++--.
T Consensus 67 p~----~~~~~vl~~l~~~l~~~~iViDvs 92 (437)
T PRK08655 67 PI----NVTEDVIKEVAPHVKEGSLLMDVT 92 (437)
T ss_pred CH----HHHHHHHHHHHhhCCCCCEEEEcc
Confidence 54 445678899999999988665433
No 371
>PRK08324 short chain dehydrogenase; Validated
Probab=95.40 E-value=0.32 Score=50.36 Aligned_cols=105 Identities=20% Similarity=0.280 Sum_probs=65.9
Q ss_pred CCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc----------
Q 036061 130 NPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE---------- 198 (284)
Q Consensus 130 ~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~---------- 198 (284)
.+++||..|+ |.+|........ ..|++|+.+|++++..+.+.+.+... .++.++.+|+.+...
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~--~~Ga~Vvl~~r~~~~~~~~~~~l~~~----~~v~~v~~Dvtd~~~v~~~~~~~~~ 494 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLA--AEGACVVLADLDEEAAEAAAAELGGP----DRALGVACDVTDEAAVQAAFEEAAL 494 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHH--HCcCEEEEEeCCHHHHHHHHHHHhcc----CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 5689999995 555543322221 36899999999998766555433221 478899999875321
Q ss_pred cCCCccEEEecccccCC-------hHH-----------HHHHHHHHHhhcCC---CcEEEEEe
Q 036061 199 KLGEYDCIFLAALVGMS-------KEE-----------KVKIIKHIRKYMKD---GGVLLVRS 240 (284)
Q Consensus 199 ~~~~fD~V~~aa~v~~~-------~~~-----------k~~il~~l~~~l~p---Gg~lv~r~ 240 (284)
..+..|+||.++.+... .++ ...+++.+.+.|++ ||.+++-+
T Consensus 495 ~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 495 AFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 13468999877653111 111 24566777777776 67776655
No 372
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.38 E-value=0.073 Score=51.04 Aligned_cols=101 Identities=19% Similarity=0.208 Sum_probs=78.5
Q ss_pred CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CCccEEEec
Q 036061 131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GEYDCIFLA 209 (284)
Q Consensus 131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~fD~V~~a 209 (284)
+.+|+|-=||+ |+=+|..|. ..+..+|+.=|+||+|++..+++++... .+ ....+..|+..+.... ..||+|=++
T Consensus 53 ~~~v~Dalsat-GiRgIRya~-E~~~~~v~lNDisp~Avelik~Nv~~N~-~~-~~~v~n~DAN~lm~~~~~~fd~IDiD 128 (380)
T COG1867 53 PKRVLDALSAT-GIRGIRYAV-ETGVVKVVLNDISPKAVELIKENVRLNS-GE-DAEVINKDANALLHELHRAFDVIDID 128 (380)
T ss_pred CeEEeeccccc-chhHhhhhh-hcCccEEEEccCCHHHHHHHHHHHHhcC-cc-cceeecchHHHHHHhcCCCccEEecC
Confidence 89999999986 788899987 2333389999999999999999999883 23 4455558887666553 469999777
Q ss_pred ccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 210 ALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 210 a~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.+ .-...+++...+.++.||++.+.-
T Consensus 129 PF-----GSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 129 PF-----GSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CC-----CCCchHHHHHHHHhhcCCEEEEEe
Confidence 66 334568899999999999998854
No 373
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.36 E-value=0.17 Score=49.11 Aligned_cols=100 Identities=18% Similarity=0.280 Sum_probs=61.9
Q ss_pred CEEEEeccCCChhHH-HHHHhhcCCCcEEEEEeCChHHHHHHHH------------HHHh-cCCCCCCeEEEEecccccc
Q 036061 132 KKVAFVGSGPMPLTS-IVMAKNHLKSTHFDNFDIDEAANDVARQ------------IVSS-DIEFEKRMKFVTCDIMQVK 197 (284)
Q Consensus 132 ~~VL~IGsG~lp~ta-i~LA~~~~~g~~V~~iDid~~ai~~Ar~------------~~~~-~G~l~~~I~f~~~D~~~~~ 197 (284)
++|.+||+|.+|.+. ..|++ .|.+|+++|++++.++.-++ ++.+ .. ..++++. .|..+
T Consensus 1 mkI~vIGlG~~G~~lA~~La~---~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~--~g~l~~~-~~~~~-- 72 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLAD---LGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALA--AGRLRAT-TDYED-- 72 (411)
T ss_pred CEEEEECCCchhHHHHHHHHh---cCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhh--cCCeEEE-CCHHH--
Confidence 379999999877653 33444 78899999999988765432 1111 00 0134432 23221
Q ss_pred ccCCCccEEEecccccC------ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 198 EKLGEYDCIFLAALVGM------SKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 198 ~~~~~fD~V~~aa~v~~------~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.....|+||++..-.. +...-..+.+.+.+.+++|.+++..+
T Consensus 73 -~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S 120 (411)
T TIGR03026 73 -AIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES 120 (411)
T ss_pred -HHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 2356899997754211 11235667788889999998888776
No 374
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=95.35 E-value=0.082 Score=49.12 Aligned_cols=90 Identities=12% Similarity=0.269 Sum_probs=57.6
Q ss_pred CEEEEeccCCChhHH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061 132 KKVAFVGSGPMPLTS-IVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA 210 (284)
Q Consensus 132 ~~VL~IGsG~lp~ta-i~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa 210 (284)
++|.+||+|.+|.+- ..|++ .|.+|+.+|++++.++..++ .|. . . ..+..++.......|+||++.
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~---~g~~V~~~dr~~~~~~~l~~----~g~-~-~----~~s~~~~~~~~~~~dvIi~~v 67 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAK---RGHDCVGYDHDQDAVKAMKE----DRT-T-G----VANLRELSQRLSAPRVVWVMV 67 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHH----cCC-c-c----cCCHHHHHhhcCCCCEEEEEc
Confidence 379999999877542 22333 68899999999987666554 331 1 1 123333332334579998763
Q ss_pred cccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061 211 LVGMSKEEKVKIIKHIRKYMKDGGVLLV 238 (284)
Q Consensus 211 ~v~~~~~~k~~il~~l~~~l~pGg~lv~ 238 (284)
.- ..-..+++++...+++|.+++-
T Consensus 68 p~----~~~~~v~~~l~~~l~~g~ivid 91 (298)
T TIGR00872 68 PH----GIVDAVLEELAPTLEKGDIVID 91 (298)
T ss_pred Cc----hHHHHHHHHHHhhCCCCCEEEE
Confidence 32 3446778899999998876544
No 375
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=95.30 E-value=0.25 Score=47.44 Aligned_cols=112 Identities=15% Similarity=0.159 Sum_probs=79.4
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCC--CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccccc-----
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLK--STHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEK----- 199 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~--g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~----- 199 (284)
+++++.+|||..+-|++=|+..|...+.. ...|++=|.|+..+..=+.-..++. +..+.+...|+...+..
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~--~~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP--SPNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC--CcceeeecccceeccccccccC
Confidence 35899999999999999888777653322 3479999999999888887776665 34555666666544432
Q ss_pred ----CCCccEEEecccc---c------------CChH-------HHHHHHHHHHhhcCCCcEEEEEe
Q 036061 200 ----LGEYDCIFLAALV---G------------MSKE-------EKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 200 ----~~~fD~V~~aa~v---~------------~~~~-------~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.-.||-|+++.-- | |..+ -..+++..-.+.||+||.+|+.+
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST 296 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST 296 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence 1249999876521 1 1000 12678999999999999999987
No 376
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.29 E-value=0.26 Score=46.03 Aligned_cols=102 Identities=19% Similarity=0.216 Sum_probs=61.4
Q ss_pred CEEEEeccCCChhHHHHHHhhcCCC--cEEEEEeCChHHH-HHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 132 KKVAFVGSGPMPLTSIVMAKNHLKS--THFDNFDIDEAAN-DVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai~LA~~~~~g--~~V~~iDid~~ai-~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
++|..||+|..|.+...... ..| .+++.+|++++.. ..+..+-+........+.+..+|.. ++.+.|+|++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~--~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~----~l~~aDIVIi 74 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLV--NQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYS----DCKDADIVVI 74 (306)
T ss_pred CEEEEECCCHHHHHHHHHHH--hcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHH----HhCCCCEEEE
Confidence 37999999987776555433 244 5899999988753 3444443333211234555544432 3467999998
Q ss_pred cccc----cCChHH--------HHHHHHHHHhhcCCCcEEEEEe
Q 036061 209 AALV----GMSKEE--------KVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 209 aa~v----~~~~~~--------k~~il~~l~~~l~pGg~lv~r~ 240 (284)
++.+ +|+..+ -.++.+.+.++ .|.|++++-+
T Consensus 75 tag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~-~~~~~vivvs 117 (306)
T cd05291 75 TAGAPQKPGETRLDLLEKNAKIMKSIVPKIKAS-GFDGIFLVAS 117 (306)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEec
Confidence 8754 333322 14455555554 6788877755
No 377
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=95.26 E-value=0.057 Score=55.62 Aligned_cols=111 Identities=16% Similarity=0.187 Sum_probs=72.1
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhc------CC-----CcEEEEEeCCh---HH-----------HHHHHHHHHh-----
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNH------LK-----STHFDNFDIDE---AA-----------NDVARQIVSS----- 178 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~------~~-----g~~V~~iDid~---~a-----------i~~Ar~~~~~----- 178 (284)
.+.-+|+|+|=|+ |+..+...+.. .+ .-+++.+|.+| +- .+.++++.+.
T Consensus 56 ~~~~~i~e~gfG~-G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 134 (662)
T PRK01747 56 RRRFVIAETGFGT-GLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLL 134 (662)
T ss_pred CCcEEEEecCcch-HHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccC
Confidence 3447999999995 78766655422 12 24799999765 22 2333444432
Q ss_pred cCC----C-CC--CeEEEEeccccccccC-CCccEEEeccccc-CChHH-HHHHHHHHHhhcCCCcEEEEEe
Q 036061 179 DIE----F-EK--RMKFVTCDIMQVKEKL-GEYDCIFLAALVG-MSKEE-KVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 179 ~G~----l-~~--~I~f~~~D~~~~~~~~-~~fD~V~~aa~v~-~~~~~-k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.|. + .. ..++..||+.+....+ ..||++|++.+-. .+++. -.+++.+++++++|||+++.-+
T Consensus 135 ~g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 135 PGCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred CCceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 121 0 12 3446789998776655 4699999998752 12222 2789999999999999998755
No 378
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=95.25 E-value=0.25 Score=48.76 Aligned_cols=77 Identities=19% Similarity=0.332 Sum_probs=52.8
Q ss_pred CEEEEeccCCChhHHHHHH---hh--cCCCcEEEEEeCChHHHHH----HHHHHHhcCCCCCCeEEEEeccccccccCCC
Q 036061 132 KKVAFVGSGPMPLTSIVMA---KN--HLKSTHFDNFDIDEAANDV----ARQIVSSDIEFEKRMKFVTCDIMQVKEKLGE 202 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai~LA---~~--~~~g~~V~~iDid~~ai~~----Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~ 202 (284)
.||..||+|.. +|...+- +. .+++.+|+-+|||+++++. |++++++.|. .+++... ++....+.+
T Consensus 1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~---~~~v~~T--tdr~eAl~g 74 (437)
T cd05298 1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYP---EIKFVYT--TDPEEAFTD 74 (437)
T ss_pred CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCC---CeEEEEE--CCHHHHhCC
Confidence 48999999964 6654432 21 2567999999999998887 5555566662 5665432 233445667
Q ss_pred ccEEEecccccC
Q 036061 203 YDCIFLAALVGM 214 (284)
Q Consensus 203 fD~V~~aa~v~~ 214 (284)
-|+||.+..||.
T Consensus 75 ADfVi~~irvGg 86 (437)
T cd05298 75 ADFVFAQIRVGG 86 (437)
T ss_pred CCEEEEEeeeCC
Confidence 899998887754
No 379
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=95.23 E-value=0.1 Score=51.95 Aligned_cols=97 Identities=11% Similarity=0.150 Sum_probs=64.1
Q ss_pred CEEEEeccCCChhHHHHHHhhc-CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061 132 KKVAFVGSGPMPLTSIVMAKNH-LKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA 210 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai~LA~~~-~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa 210 (284)
.+|.+||.|.+|.. ||++. ..|.+|+++|++++.++...+.....|. .++ .+.+..++...+.+.|+||+..
T Consensus 2 ~~IgvIGLG~MG~~---lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~---~i~-~~~s~~e~v~~l~~~d~Iil~v 74 (470)
T PTZ00142 2 SDIGLIGLAVMGQN---LALNIASRGFKISVYNRTYEKTEEFVKKAKEGNT---RVK-GYHTLEELVNSLKKPRKVILLI 74 (470)
T ss_pred CEEEEEeEhHHHHH---HHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCC---cce-ecCCHHHHHhcCCCCCEEEEEe
Confidence 47999999988755 33322 3788999999999998876664433342 222 2345545444444579888763
Q ss_pred cccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061 211 LVGMSKEEKVKIIKHIRKYMKDGGVLLV 238 (284)
Q Consensus 211 ~v~~~~~~k~~il~~l~~~l~pGg~lv~ 238 (284)
.- .+.-..+++.+...|++|-+++-
T Consensus 75 ~~---~~~v~~vi~~l~~~L~~g~iIID 99 (470)
T PTZ00142 75 KA---GEAVDETIDNLLPLLEKGDIIID 99 (470)
T ss_pred CC---hHHHHHHHHHHHhhCCCCCEEEE
Confidence 31 24456788999999998876644
No 380
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.22 E-value=0.11 Score=48.44 Aligned_cols=95 Identities=11% Similarity=0.070 Sum_probs=57.1
Q ss_pred CEEEEeccCCChh-HHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC----CCCCeEEEEeccccccccCCCccEE
Q 036061 132 KKVAFVGSGPMPL-TSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE----FEKRMKFVTCDIMQVKEKLGEYDCI 206 (284)
Q Consensus 132 ~~VL~IGsG~lp~-tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~----l~~~I~f~~~D~~~~~~~~~~fD~V 206 (284)
++|+.||+|++|. -+..|++ .|..|+.++.+++.++.-++ .-|. -.....+.. ... .+...+.||+|
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~---~G~~V~lv~r~~~~~~~i~~---~~Gl~i~~~g~~~~~~~-~~~-~~~~~~~~D~v 74 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLAR---AGLPVRLILRDRQRLAAYQQ---AGGLTLVEQGQASLYAI-PAE-TADAAEPIHRL 74 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHh---CCCCeEEEEechHHHHHHhh---cCCeEEeeCCcceeecc-CCC-CcccccccCEE
Confidence 5899999997664 4455555 67899999998755544333 2221 011111111 111 11223579999
Q ss_pred EecccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061 207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLV 238 (284)
Q Consensus 207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~ 238 (284)
|++. .. .+-..+++.+.+.+.+++.++.
T Consensus 75 iv~v-K~---~~~~~al~~l~~~l~~~t~vv~ 102 (305)
T PRK05708 75 LLAC-KA---YDAEPAVASLAHRLAPGAELLL 102 (305)
T ss_pred EEEC-CH---HhHHHHHHHHHhhCCCCCEEEE
Confidence 9763 21 2345788999999999986544
No 381
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.19 E-value=0.085 Score=52.03 Aligned_cols=74 Identities=8% Similarity=-0.088 Sum_probs=49.8
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChH-HHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEA-ANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~-ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~ 207 (284)
..+++|+.||+|..|+++..+.. ..|.+|+.+|.++. ......+.+++.| |++..++... ....+|+|+
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~--~~G~~V~~~d~~~~~~~~~~~~~l~~~g-----v~~~~~~~~~---~~~~~D~Vv 83 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALL--ELGARVTVVDDGDDERHRALAAILEALG-----ATVRLGPGPT---LPEDTDLVV 83 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCchhhhHHHHHHHHHcC-----CEEEECCCcc---ccCCCCEEE
Confidence 34679999999988887655544 47899999997653 3222233344545 5777666433 223689999
Q ss_pred ecccc
Q 036061 208 LAALV 212 (284)
Q Consensus 208 ~aa~v 212 (284)
.+..+
T Consensus 84 ~s~Gi 88 (480)
T PRK01438 84 TSPGW 88 (480)
T ss_pred ECCCc
Confidence 88776
No 382
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.16 E-value=0.1 Score=46.94 Aligned_cols=102 Identities=21% Similarity=0.180 Sum_probs=61.0
Q ss_pred CCCCEEEEeccCCChhHHH-HHHhhcCCCcEEEEE--eCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061 129 VNPKKVAFVGSGPMPLTSI-VMAKNHLKSTHFDNF--DIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC 205 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai-~LA~~~~~g~~V~~i--Did~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~ 205 (284)
..+++||.||+|..+..-+ .|.+ .|++||-| +++++..+++. .| +++++..+.. +.++..+++
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~---~gA~VtVVap~i~~el~~l~~-----~~----~i~~~~r~~~--~~dl~g~~L 88 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLK---KGCYVYILSKKFSKEFLDLKK-----YG----NLKLIKGNYD--KEFIKDKHL 88 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHh---CCCEEEEEcCCCCHHHHHHHh-----CC----CEEEEeCCCC--hHHhCCCcE
Confidence 5678999999997655422 3333 68887777 77777655433 23 6888887653 345567899
Q ss_pred EEecccccCChHHHHHHHHHHHhhcCCCcEEEE-EecCccccccCcc
Q 036061 206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLV-RSAKGARAFLYPV 251 (284)
Q Consensus 206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~-r~~~glr~~lYp~ 251 (284)
||.+.. + + ++=+.+++..+.-+.++. .+......|..|.
T Consensus 89 ViaATd---D-~---~vN~~I~~~a~~~~~lvn~vd~p~~~dFi~PA 128 (223)
T PRK05562 89 IVIATD---D-E---KLNNKIRKHCDRLYKLYIDCSDYKKGLCIIPY 128 (223)
T ss_pred EEECCC---C-H---HHHHHHHHHHHHcCCeEEEcCCcccCeEEeee
Confidence 987633 1 2 233344444444344333 3333445677774
No 383
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=95.15 E-value=0.12 Score=48.91 Aligned_cols=100 Identities=14% Similarity=0.119 Sum_probs=66.9
Q ss_pred CCCCCCEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC---CC
Q 036061 127 GVVNPKKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL---GE 202 (284)
Q Consensus 127 ~~~~~~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~---~~ 202 (284)
..+++++||..| +|..|..++.||++ .|++++.+--+++-.+.+ +++|. ..-|.+...|..+....+ ..
T Consensus 139 ~l~~g~~VLV~gaaGgVG~~aiQlAk~--~G~~~v~~~~s~~k~~~~----~~lGA-d~vi~y~~~~~~~~v~~~t~g~g 211 (326)
T COG0604 139 GLKPGETVLVHGAAGGVGSAAIQLAKA--LGATVVAVVSSSEKLELL----KELGA-DHVINYREEDFVEQVRELTGGKG 211 (326)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHH--cCCcEEEEecCHHHHHHH----HhcCC-CEEEcCCcccHHHHHHHHcCCCC
Confidence 457799999999 88899999999993 555666666666554444 45662 334455555554433222 25
Q ss_pred ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
+|+|+-... ...+....+.|++||+++.-..
T Consensus 212 vDvv~D~vG--------~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 212 VDVVLDTVG--------GDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred ceEEEECCC--------HHHHHHHHHHhccCCEEEEEec
Confidence 999985432 2455677888999999888554
No 384
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.14 E-value=0.039 Score=55.76 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=30.8
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCC
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDID 165 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid 165 (284)
..++++|+.||+||.|+++...++ ..|.+|+.+|..
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~--~~G~~V~v~e~~ 169 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLR--RMGHAVTIFEAG 169 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHH--HCCCeEEEEecC
Confidence 467899999999999999998877 468899999964
No 385
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.14 E-value=0.2 Score=44.30 Aligned_cols=104 Identities=13% Similarity=0.126 Sum_probs=61.2
Q ss_pred CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061 130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA 209 (284)
Q Consensus 130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a 209 (284)
.+++||.||+|..+...+...- ..|+.||.++.+.. ..-+++. ..| +++++.++.. ..++..+|+||.+
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll--~~ga~VtVvsp~~~--~~l~~l~-~~~----~i~~~~~~~~--~~dl~~~~lVi~a 76 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLL--KAGAQLRVIAEELE--SELTLLA-EQG----GITWLARCFD--ADILEGAFLVIAA 76 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHH--HCCCEEEEEcCCCC--HHHHHHH-HcC----CEEEEeCCCC--HHHhCCcEEEEEC
Confidence 5789999999987766433222 37899999977654 1122222 223 7899888864 3456689999876
Q ss_pred ccccCChHHHHHHHHHHHhhcCCCcEEEEEe-cCccccccCcc
Q 036061 210 ALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS-AKGARAFLYPV 251 (284)
Q Consensus 210 a~v~~~~~~k~~il~~l~~~l~pGg~lv~r~-~~glr~~lYp~ 251 (284)
... .+.-.++..... .-|.++-.. ...+..|..|.
T Consensus 77 t~d---~~ln~~i~~~a~----~~~ilvn~~d~~e~~~f~~pa 112 (205)
T TIGR01470 77 TDD---EELNRRVAHAAR----ARGVPVNVVDDPELCSFIFPS 112 (205)
T ss_pred CCC---HHHHHHHHHHHH----HcCCEEEECCCcccCeEEEee
Confidence 443 223334444443 346655322 22334566663
No 386
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.12 E-value=0.37 Score=39.90 Aligned_cols=104 Identities=25% Similarity=0.349 Sum_probs=65.8
Q ss_pred CEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChH-HHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061 132 KKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEA-ANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA 209 (284)
Q Consensus 132 ~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~-ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a 209 (284)
.||..||+ |..|.+...+........+++-+|++++ +-..+..+-+........+++..++ ..+..+-|+|++.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~----~~~~~~aDivvit 76 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGD----YEALKDADIVVIT 76 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESS----GGGGTTESEEEET
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccc----ccccccccEEEEe
Confidence 48999999 9888887766654566778999999964 4455666555443222344554433 3345678999988
Q ss_pred ccc----cCChHH--------HHHHHHHHHhhcCCCcEEEEEe
Q 036061 210 ALV----GMSKEE--------KVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 210 a~v----~~~~~~--------k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+.. +++..+ -.++.+.+.+. .|.|.+++-+
T Consensus 77 ag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~-~p~~~vivvt 118 (141)
T PF00056_consen 77 AGVPRKPGMSRLDLLEANAKIVKEIAKKIAKY-APDAIVIVVT 118 (141)
T ss_dssp TSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHH-STTSEEEE-S
T ss_pred ccccccccccHHHHHHHhHhHHHHHHHHHHHh-CCccEEEEeC
Confidence 754 333211 14455556666 4778877765
No 387
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=95.11 E-value=0.07 Score=50.58 Aligned_cols=93 Identities=19% Similarity=0.231 Sum_probs=60.1
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
-.+++|..||+|.+|.+....++ ..|.+|+++|+++.... + .+++ ..+.. ..+...|+|++
T Consensus 144 l~g~~VgIIG~G~IG~~vA~~L~--~~G~~V~~~d~~~~~~~---------~----~~~~-~~~l~---ell~~aDiVil 204 (330)
T PRK12480 144 VKNMTVAIIGTGRIGAATAKIYA--GFGATITAYDAYPNKDL---------D----FLTY-KDSVK---EAIKDADIISL 204 (330)
T ss_pred cCCCEEEEECCCHHHHHHHHHHH--hCCCEEEEEeCChhHhh---------h----hhhc-cCCHH---HHHhcCCEEEE
Confidence 36789999999998876444443 47999999999975421 1 0111 12222 23356899987
Q ss_pred cccccCChHHHHHHHHHHHhhcCCCcEEEEEecCc
Q 036061 209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKG 243 (284)
Q Consensus 209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~g 243 (284)
+.-. +.+-+.-+-+.+...|++|++|+- .++|
T Consensus 205 ~lP~--t~~t~~li~~~~l~~mk~gavlIN-~aRG 236 (330)
T PRK12480 205 HVPA--NKESYHLFDKAMFDHVKKGAILVN-AARG 236 (330)
T ss_pred eCCC--cHHHHHHHhHHHHhcCCCCcEEEE-cCCc
Confidence 6543 344566677889999999886544 4343
No 388
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.10 E-value=0.18 Score=51.65 Aligned_cols=97 Identities=15% Similarity=0.095 Sum_probs=67.4
Q ss_pred CCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc----ccCCCccEE
Q 036061 131 PKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK----EKLGEYDCI 206 (284)
Q Consensus 131 ~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~----~~~~~fD~V 206 (284)
..+|+.+|.|..|......-+ ..|..++.+|.|++.++.+++ .| ...+.||+++.. ....+.|.|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~--~~g~~vvvID~d~~~v~~~~~----~g-----~~v~~GDat~~~~L~~agi~~A~~v 468 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLM--ANKMRITVLERDISAVNLMRK----YG-----YKVYYGDATQLELLRAAGAEKAEAI 468 (601)
T ss_pred cCCEEEecCchHHHHHHHHHH--hCCCCEEEEECCHHHHHHHHh----CC-----CeEEEeeCCCHHHHHhcCCccCCEE
Confidence 468999999998876433222 367899999999999998865 34 478889998632 133468887
Q ss_pred EecccccCChHHHHHHHHHHHhhcCCCcEEEEEecC
Q 036061 207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAK 242 (284)
Q Consensus 207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~ 242 (284)
+.+.. ..+....+-...|.+.|...++.|..+
T Consensus 469 v~~~~----d~~~n~~i~~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 469 VITCN----EPEDTMKIVELCQQHFPHLHILARARG 500 (601)
T ss_pred EEEeC----CHHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 75432 133333444556677999999998843
No 389
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=95.03 E-value=0.14 Score=47.46 Aligned_cols=98 Identities=14% Similarity=0.227 Sum_probs=59.0
Q ss_pred CEEEEeccCCChhHHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHh---cCC--CCCCeEEEEeccccccccCCCccE
Q 036061 132 KKVAFVGSGPMPLTSI-VMAKNHLKSTHFDNFDIDEAANDVARQIVSS---DIE--FEKRMKFVTCDIMQVKEKLGEYDC 205 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai-~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~---~G~--l~~~I~f~~~D~~~~~~~~~~fD~ 205 (284)
++|.+||+|.+|..-. .|++ .|..|+.+|.+++.++..++.-.. .+. +..++++ ..|..+ .....|+
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~D~ 74 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLAR---NGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAE---ALADADL 74 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHh---CCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHH---HHhCCCE
Confidence 3799999997765422 2333 678999999998877655442100 000 0012222 122221 2246899
Q ss_pred EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
||++.- ......+++.+.+.+++|..++.-.
T Consensus 75 vi~~v~----~~~~~~v~~~l~~~~~~~~~vi~~~ 105 (325)
T PRK00094 75 ILVAVP----SQALREVLKQLKPLLPPDAPIVWAT 105 (325)
T ss_pred EEEeCC----HHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 997643 2566788889999888887765443
No 390
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=95.01 E-value=0.096 Score=48.49 Aligned_cols=98 Identities=18% Similarity=0.233 Sum_probs=63.9
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccc-c--ccCCCc
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQV-K--EKLGEY 203 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~-~--~~~~~f 203 (284)
..++.+||..|+|++|..++.+|++ .|. .|++++.+++..+.+++ +|. ..-+.....+..+. . ...+.+
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~--~g~~~v~~~~~~~~~~~~~~~----~g~-~~vi~~~~~~~~~~i~~~~~~~~~ 237 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARL--LGAARIIAVDSNPERLDLAKE----AGA-TDIINPKNGDIVEQILELTGGRGV 237 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEeCCHHHHHHHHH----hCC-cEEEcCCcchHHHHHHHHcCCCCC
Confidence 4678899999999889999999993 564 88999999887776655 341 11112222121111 1 112469
Q ss_pred cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061 204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR 239 (284)
Q Consensus 204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r 239 (284)
|+|+-+..- ...+....+.|+++|+++.-
T Consensus 238 d~vld~~g~-------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 238 DCVIEAVGF-------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred cEEEEccCC-------HHHHHHHHHHhhcCCEEEEE
Confidence 998853221 14778888999999998864
No 391
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.01 E-value=0.27 Score=47.94 Aligned_cols=75 Identities=21% Similarity=0.104 Sum_probs=48.8
Q ss_pred CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCCh-HHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDE-AANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~-~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
.+++|+.+|+|..|+....... ..|++|+++|.++ +.++...+.+.+.| ++++.+|..+ ...+.+|+|+.
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~--~~G~~V~~~d~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~--~~~~~~d~vv~ 74 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLK--KLGAKVILTDEKEEDQLKEALEELGELG-----IELVLGEYPE--EFLEGVDLVVV 74 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCchHHHHHHHHHHHhcC-----CEEEeCCcch--hHhhcCCEEEE
Confidence 4689999999987775433222 4799999999986 33322222223333 5677777754 22357999998
Q ss_pred ccccc
Q 036061 209 AALVG 213 (284)
Q Consensus 209 aa~v~ 213 (284)
++.+.
T Consensus 75 ~~g~~ 79 (450)
T PRK14106 75 SPGVP 79 (450)
T ss_pred CCCCC
Confidence 87653
No 392
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=95.01 E-value=0.093 Score=47.94 Aligned_cols=110 Identities=13% Similarity=0.096 Sum_probs=69.1
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhc----CCCcEEEEEeC--------------------------ChHHHHHHHHHHHh
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNH----LKSTHFDNFDI--------------------------DEAANDVARQIVSS 178 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~----~~g~~V~~iDi--------------------------d~~ai~~Ar~~~~~ 178 (284)
.-|.-|++.|+-- |-|++.++... .++-+|.++|- .....+..++++++
T Consensus 73 ~vpGdivE~GV~r-Ggs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~ 151 (248)
T PF05711_consen 73 DVPGDIVECGVWR-GGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFAR 151 (248)
T ss_dssp TS-SEEEEE--TT-SHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCC
T ss_pred CCCeEEEEEeeCC-CHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHH
Confidence 5778999999975 55666554311 23456777762 11245666677777
Q ss_pred cCCCCCCeEEEEeccccccccC--CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEecC
Q 036061 179 DIEFEKRMKFVTCDIMQVKEKL--GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAK 242 (284)
Q Consensus 179 ~G~l~~~I~f~~~D~~~~~~~~--~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~ 242 (284)
.|.+.++++|+.|...+..+.. ..+-++.++.-+ -+.-...|+.++.+|.|||++++.+++
T Consensus 152 ~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl---YesT~~aLe~lyprl~~GGiIi~DDY~ 214 (248)
T PF05711_consen 152 YGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL---YESTKDALEFLYPRLSPGGIIIFDDYG 214 (248)
T ss_dssp TTTSSTTEEEEES-HHHHCCC-TT--EEEEEE---S---HHHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred cCCCcccEEEECCcchhhhccCCCccEEEEEEeccc---hHHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence 7866789999999987655433 245555666533 266778999999999999999998853
No 393
>PRK15076 alpha-galactosidase; Provisional
Probab=94.99 E-value=0.029 Score=55.16 Aligned_cols=79 Identities=23% Similarity=0.302 Sum_probs=52.1
Q ss_pred CEEEEeccCCChhHHHH---HH-hhcCCCcEEEEEeCChHHHHHHHHHHHhcC-CCCCCeEEE-EeccccccccCCCccE
Q 036061 132 KKVAFVGSGPMPLTSIV---MA-KNHLKSTHFDNFDIDEAANDVARQIVSSDI-EFEKRMKFV-TCDIMQVKEKLGEYDC 205 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai~---LA-~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G-~l~~~I~f~-~~D~~~~~~~~~~fD~ 205 (284)
.+|..||+|.+|++... ++ ...+.+.+|+-+|+|++.++.+.+++++.- .....+++. +.|.. ..+.+-|+
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~---eal~dADf 78 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRR---EALQGADY 78 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHH---HHhCCCCE
Confidence 48999999987766543 22 113467799999999999887666655421 011245555 45532 34456899
Q ss_pred EEeccccc
Q 036061 206 IFLAALVG 213 (284)
Q Consensus 206 V~~aa~v~ 213 (284)
|+.++.++
T Consensus 79 Vv~ti~vg 86 (431)
T PRK15076 79 VINAIQVG 86 (431)
T ss_pred EeEeeeeC
Confidence 99888775
No 394
>PRK06940 short chain dehydrogenase; Provisional
Probab=94.98 E-value=0.29 Score=44.42 Aligned_cols=101 Identities=17% Similarity=0.184 Sum_probs=62.8
Q ss_pred CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc---------cCCC
Q 036061 132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE---------KLGE 202 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~---------~~~~ 202 (284)
+.++.-|+|.+|. .+|++...|++|+.+|.+++.++...+.+...| .++.++.+|+.+... ..+.
T Consensus 3 k~~lItGa~gIG~---~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dv~d~~~i~~~~~~~~~~g~ 76 (275)
T PRK06940 3 EVVVVIGAGGIGQ---AIARRVGAGKKVLLADYNEENLEAAAKTLREAG---FDVSTQEVDVSSRESVKALAATAQTLGP 76 (275)
T ss_pred CEEEEECCChHHH---HHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEeecCCHHHHHHHHHHHHhcCC
Confidence 4566667653333 345544578999999999887665555454444 378889999876321 1346
Q ss_pred ccEEEecccccCChHHH-----------HHHHHHHHhhcCCCcEEEE
Q 036061 203 YDCIFLAALVGMSKEEK-----------VKIIKHIRKYMKDGGVLLV 238 (284)
Q Consensus 203 fD~V~~aa~v~~~~~~k-----------~~il~~l~~~l~pGg~lv~ 238 (284)
.|+++.++.+....++. ..+++.+.+.|+++|.+++
T Consensus 77 id~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~ 123 (275)
T PRK06940 77 VTGLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVV 123 (275)
T ss_pred CCEEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEE
Confidence 89998777653222222 3345667777776665444
No 395
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=94.93 E-value=0.11 Score=48.44 Aligned_cols=99 Identities=17% Similarity=0.138 Sum_probs=64.9
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccc---cccCCCc
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQV---KEKLGEY 203 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~---~~~~~~f 203 (284)
..++.+|+..|+|++|..++.+|+ ..|.+ |++++.+++..+.+++ +| ...-+.....+..+. ......+
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~--~~G~~~v~~~~~~~~~~~~~~~----~g-~~~~v~~~~~~~~~~l~~~~~~~~~ 231 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAK--ASGAYPVIVSDPNEYRLELAKK----MG-ATYVVNPFKEDVVKEVADLTDGEGV 231 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHH--HcCCcEEEEECCCHHHHHHHHH----hC-CcEEEcccccCHHHHHHHhcCCCCC
Confidence 467889999999999999999998 46786 8888888877766654 45 211111111221111 1122369
Q ss_pred cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
|+|+-+..- ...+..+.+.|+++|.++.-.
T Consensus 232 d~vld~~g~-------~~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 232 DVFLEMSGA-------PKALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred CEEEECCCC-------HHHHHHHHHhhcCCCEEEEEc
Confidence 999864331 235678899999999987754
No 396
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=94.92 E-value=0.22 Score=50.35 Aligned_cols=95 Identities=12% Similarity=0.058 Sum_probs=64.5
Q ss_pred CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc----ccCCCccEEE
Q 036061 132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK----EKLGEYDCIF 207 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~----~~~~~fD~V~ 207 (284)
.+|+.+|+|+.|......-+ ..|..|+.||.|++.++.+++ .| ...++||+++.. ...++.|.|+
T Consensus 418 ~hiiI~G~G~~G~~la~~L~--~~g~~vvvId~d~~~~~~~~~----~g-----~~~i~GD~~~~~~L~~a~i~~a~~vi 486 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLL--AAGIPLVVIETSRTRVDELRE----RG-----IRAVLGNAANEEIMQLAHLDCARWLL 486 (558)
T ss_pred CCEEEECCChHHHHHHHHHH--HCCCCEEEEECCHHHHHHHHH----CC-----CeEEEcCCCCHHHHHhcCccccCEEE
Confidence 78999999988776333222 367899999999999888865 24 588999998732 2345789877
Q ss_pred ecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
.+.. +..+-..+... .+...|+..++.|..
T Consensus 487 v~~~---~~~~~~~iv~~-~~~~~~~~~iiar~~ 516 (558)
T PRK10669 487 LTIP---NGYEAGEIVAS-AREKRPDIEIIARAH 516 (558)
T ss_pred EEcC---ChHHHHHHHHH-HHHHCCCCeEEEEEC
Confidence 5432 11222234444 455689999998874
No 397
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=94.91 E-value=0.14 Score=48.43 Aligned_cols=98 Identities=19% Similarity=0.179 Sum_probs=65.9
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe--cc----cccccc
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC--DI----MQVKEK 199 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~--D~----~~~~~~ 199 (284)
...++.+||..|+|++|..++.+|+ ..|+ .|++++.+++..+.+++ +| ...-+..... +. .+.. .
T Consensus 180 ~~~~g~~vlI~g~g~vG~~a~~~a~--~~G~~~v~~~~~~~~~~~~~~~----~g-~~~~v~~~~~~~~~~~~l~~~~-~ 251 (365)
T cd05279 180 KVTPGSTCAVFGLGGVGLSVIMGCK--AAGASRIIAVDINKDKFEKAKQ----LG-ATECINPRDQDKPIVEVLTEMT-D 251 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHH--HcCCCeEEEEeCCHHHHHHHHH----hC-CCeecccccccchHHHHHHHHh-C
Confidence 4577899999999999999999999 3566 48999999888777754 45 2222222122 11 1111 2
Q ss_pred CCCccEEEecccccCChHHHHHHHHHHHhhcC-CCcEEEEEe
Q 036061 200 LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMK-DGGVLLVRS 240 (284)
Q Consensus 200 ~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~-pGg~lv~r~ 240 (284)
+.+|+|+-+... ...+....+.++ ++|+++.-.
T Consensus 252 -~~~d~vid~~g~-------~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 252 -GGVDYAFEVIGS-------ADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred -CCCcEEEECCCC-------HHHHHHHHHHhccCCCEEEEEe
Confidence 469999854321 245677888899 999988654
No 398
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=94.87 E-value=0.26 Score=48.43 Aligned_cols=77 Identities=25% Similarity=0.366 Sum_probs=53.5
Q ss_pred CEEEEeccCCChhHHHHHHh----h-cCCCcEEEEEeCChHHHHH----HHHHHHhcCCCCCCeEEEEeccccccccCCC
Q 036061 132 KKVAFVGSGPMPLTSIVMAK----N-HLKSTHFDNFDIDEAANDV----ARQIVSSDIEFEKRMKFVTCDIMQVKEKLGE 202 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai~LA~----~-~~~g~~V~~iDid~~ai~~----Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~ 202 (284)
.||.+||+|.. +|.-.+-. . .+++.+|+-+|||++.++. |++++++.|. .+++... ++....+.+
T Consensus 1 ~KI~iIGgGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~---~~~v~~t--tD~~~Al~g 74 (425)
T cd05197 1 VKIAIIGGGSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGA---DIKFEKT--MDLEDAIID 74 (425)
T ss_pred CEEEEECCchH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCC---CeEEEEe--CCHHHHhCC
Confidence 37999999964 77554432 1 2678999999999988876 6677777773 4565432 223445667
Q ss_pred ccEEEecccccC
Q 036061 203 YDCIFLAALVGM 214 (284)
Q Consensus 203 fD~V~~aa~v~~ 214 (284)
.|+||...-+|.
T Consensus 75 ADfVi~~irvGg 86 (425)
T cd05197 75 ADFVINQFRVGG 86 (425)
T ss_pred CCEEEEeeecCC
Confidence 899998877744
No 399
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=94.84 E-value=0.084 Score=44.55 Aligned_cols=90 Identities=16% Similarity=0.218 Sum_probs=55.6
Q ss_pred CEEEEeccCCChhHHHHHHhhc-CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061 132 KKVAFVGSGPMPLTSIVMAKNH-LKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA 210 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai~LA~~~-~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa 210 (284)
++|.+||.|.+|.. +|++. ..|..|+.+|++++..+...+ .| ++. +.+..++. ...|+||++-
T Consensus 2 ~~Ig~IGlG~mG~~---~a~~L~~~g~~v~~~d~~~~~~~~~~~----~g-----~~~-~~s~~e~~---~~~dvvi~~v 65 (163)
T PF03446_consen 2 MKIGFIGLGNMGSA---MARNLAKAGYEVTVYDRSPEKAEALAE----AG-----AEV-ADSPAEAA---EQADVVILCV 65 (163)
T ss_dssp BEEEEE--SHHHHH---HHHHHHHTTTEEEEEESSHHHHHHHHH----TT-----EEE-ESSHHHHH---HHBSEEEE-S
T ss_pred CEEEEEchHHHHHH---HHHHHHhcCCeEEeeccchhhhhhhHH----hh-----hhh-hhhhhhHh---hcccceEeec
Confidence 48999999976643 44432 368999999999977665554 13 222 23333332 2469998653
Q ss_pred cccCChHHHHHHHHH--HHhhcCCCcEEEEEe
Q 036061 211 LVGMSKEEKVKIIKH--IRKYMKDGGVLLVRS 240 (284)
Q Consensus 211 ~v~~~~~~k~~il~~--l~~~l~pGg~lv~r~ 240 (284)
. +...-..++.. +...+++|.+++--+
T Consensus 66 ~---~~~~v~~v~~~~~i~~~l~~g~iiid~s 94 (163)
T PF03446_consen 66 P---DDDAVEAVLFGENILAGLRPGKIIIDMS 94 (163)
T ss_dssp S---SHHHHHHHHHCTTHGGGS-TTEEEEE-S
T ss_pred c---cchhhhhhhhhhHHhhccccceEEEecC
Confidence 2 23555678888 889999998887655
No 400
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.83 E-value=0.31 Score=43.63 Aligned_cols=85 Identities=15% Similarity=0.127 Sum_probs=55.2
Q ss_pred CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc--c--cCCCccEEE
Q 036061 132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK--E--KLGEYDCIF 207 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~--~--~~~~fD~V~ 207 (284)
++++.||+|.+|.+..-... ..|..|+.||.|++.++...+ . .-..+.+++|+++.. . ....+|+++
T Consensus 1 m~iiIiG~G~vG~~va~~L~--~~g~~Vv~Id~d~~~~~~~~~---~----~~~~~~v~gd~t~~~~L~~agi~~aD~vv 71 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELS--EEGHNVVLIDRDEERVEEFLA---D----ELDTHVVIGDATDEDVLEEAGIDDADAVV 71 (225)
T ss_pred CEEEEECCcHHHHHHHHHHH--hCCCceEEEEcCHHHHHHHhh---h----hcceEEEEecCCCHHHHHhcCCCcCCEEE
Confidence 57899999999887332222 367899999999998776333 1 124678889988632 2 234799988
Q ss_pred ecccccCChHHHHHHHHHHHhh
Q 036061 208 LAALVGMSKEEKVKIIKHIRKY 229 (284)
Q Consensus 208 ~aa~v~~~~~~k~~il~~l~~~ 229 (284)
.+..- .+-.-++-.++..
T Consensus 72 a~t~~----d~~N~i~~~la~~ 89 (225)
T COG0569 72 AATGN----DEVNSVLALLALK 89 (225)
T ss_pred EeeCC----CHHHHHHHHHHHH
Confidence 55432 2334455555544
No 401
>PLN02702 L-idonate 5-dehydrogenase
Probab=94.81 E-value=0.15 Score=47.96 Aligned_cols=101 Identities=18% Similarity=0.224 Sum_probs=66.0
Q ss_pred cCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEE--Eecccc----cc-
Q 036061 126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFV--TCDIMQ----VK- 197 (284)
Q Consensus 126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~--~~D~~~----~~- 197 (284)
....++.+|+.+|+|++|..++.+|++ .|+ .|+++|.+++..+.+++ +| ....+.+. ..+..+ +.
T Consensus 177 ~~~~~g~~vlI~g~g~vG~~~~~~a~~--~G~~~v~~~~~~~~~~~~~~~----~g-~~~~~~~~~~~~~~~~~~~~~~~ 249 (364)
T PLN02702 177 ANIGPETNVLVMGAGPIGLVTMLAARA--FGAPRIVIVDVDDERLSVAKQ----LG-ADEIVLVSTNIEDVESEVEEIQK 249 (364)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----hC-CCEEEecCcccccHHHHHHHHhh
Confidence 345778999999999999999999993 566 48899999877776655 45 22222221 112111 10
Q ss_pred ccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 198 EKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 198 ~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
...+.+|+|+-...- ...+....+.++++|+++.-.
T Consensus 250 ~~~~~~d~vid~~g~-------~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 250 AMGGGIDVSFDCVGF-------NKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred hcCCCCCEEEECCCC-------HHHHHHHHHHHhcCCEEEEEc
Confidence 011358999854221 135788899999999988654
No 402
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.76 E-value=0.28 Score=48.01 Aligned_cols=76 Identities=9% Similarity=0.077 Sum_probs=49.6
Q ss_pred EEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHH-HHHHHHHhcCCCCCCeEEEEeccccc---cccCCCccEEEe
Q 036061 133 KVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAAND-VARQIVSSDIEFEKRMKFVTCDIMQV---KEKLGEYDCIFL 208 (284)
Q Consensus 133 ~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~-~Ar~~~~~~G~l~~~I~f~~~D~~~~---~~~~~~fD~V~~ 208 (284)
+|++||.|+.|+++..++. ..|..|+++|..+..-. .....+...| +++..+.-.+. ...+.++|.|+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~--~~G~~V~~~D~~~~~~~~~~~~~l~~~g-----i~~~~g~~~~~~~~~~~~~~~d~vv~ 74 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLK--AQGWEVVVSDRNDSPELLERQQELEQEG-----ITVKLGKPLELESFQPWLDQPDLVVV 74 (459)
T ss_pred eEEEEccCHHHHHHHHHHH--HCCCEEEEECCCCchhhHHHHHHHHHcC-----CEEEECCccchhhhhHHhhcCCEEEE
Confidence 7999999999999877765 57999999998765321 1122234444 46655543221 012457999998
Q ss_pred cccccCC
Q 036061 209 AALVGMS 215 (284)
Q Consensus 209 aa~v~~~ 215 (284)
++.+..+
T Consensus 75 s~gi~~~ 81 (459)
T PRK02705 75 SPGIPWD 81 (459)
T ss_pred CCCCCCC
Confidence 8777443
No 403
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=94.74 E-value=0.17 Score=46.96 Aligned_cols=97 Identities=19% Similarity=0.300 Sum_probs=56.1
Q ss_pred EEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHH--HHhcCCCCCCeEEEE-eccccccccCCCccEEEec
Q 036061 134 VAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQI--VSSDIEFEKRMKFVT-CDIMQVKEKLGEYDCIFLA 209 (284)
Q Consensus 134 VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~--~~~~G~l~~~I~f~~-~D~~~~~~~~~~fD~V~~a 209 (284)
|..||+|.+|.+...+.. ..|. +|+.+|++++.. .++.. .+.........++.. +|. .++.+-|+|+++
T Consensus 1 I~IIGaG~vG~~ia~~la--~~~l~eV~L~Di~e~~~-~g~~~dl~~~~~~~~~~~~I~~t~d~----~~l~dADiVIit 73 (300)
T cd01339 1 ISIIGAGNVGATLAQLLA--LKELGDVVLLDIVEGLP-QGKALDISQAAPILGSDTKVTGTNDY----EDIAGSDVVVIT 73 (300)
T ss_pred CEEECCCHHHHHHHHHHH--hCCCcEEEEEeCCCcHH-HHHHHHHHHhhhhcCCCeEEEEcCCH----HHhCCCCEEEEe
Confidence 468999988777554433 2332 999999998743 33332 221111112344442 442 235678999986
Q ss_pred ccc----c--------CChHHHHHHHHHHHhhcCCCcEEEE
Q 036061 210 ALV----G--------MSKEEKVKIIKHIRKYMKDGGVLLV 238 (284)
Q Consensus 210 a~v----~--------~~~~~k~~il~~l~~~l~pGg~lv~ 238 (284)
+.+ + .+.+-+.++++.+.+.. |.+.+++
T Consensus 74 ~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv 113 (300)
T cd01339 74 AGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIV 113 (300)
T ss_pred cCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEE
Confidence 643 1 12344678888888876 5555444
No 404
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=94.73 E-value=0.37 Score=44.62 Aligned_cols=95 Identities=13% Similarity=0.082 Sum_probs=62.1
Q ss_pred cCCCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc---c-cccC
Q 036061 126 NGVVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ---V-KEKL 200 (284)
Q Consensus 126 ~~~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~---~-~~~~ 200 (284)
....++.+||..|+ |++|..++.+|+ ..|++|++++.++ ..+ .++..| . + .+...+-.. . ....
T Consensus 173 ~~~~~g~~vlI~g~~g~ig~~~~~~a~--~~g~~vi~~~~~~-~~~----~~~~~g-~-~--~~~~~~~~~~~~~~~~~~ 241 (350)
T cd08274 173 AGVGAGETVLVTGASGGVGSALVQLAK--RRGAIVIAVAGAA-KEE----AVRALG-A-D--TVILRDAPLLADAKALGG 241 (350)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHH--hcCCEEEEEeCch-hhH----HHHhcC-C-e--EEEeCCCccHHHHHhhCC
Confidence 34578899999998 899999999999 4689999988553 333 334566 2 2 222111100 0 1122
Q ss_pred CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061 201 GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR 239 (284)
Q Consensus 201 ~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r 239 (284)
..+|+|+-+.. . ..+....+.|+++|.++.-
T Consensus 242 ~~~d~vi~~~g-----~---~~~~~~~~~l~~~G~~v~~ 272 (350)
T cd08274 242 EPVDVVADVVG-----G---PLFPDLLRLLRPGGRYVTA 272 (350)
T ss_pred CCCcEEEecCC-----H---HHHHHHHHHhccCCEEEEe
Confidence 35999985433 1 2567889999999998854
No 405
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.72 E-value=0.37 Score=46.84 Aligned_cols=98 Identities=12% Similarity=0.092 Sum_probs=62.0
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc----ccCCCcc
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK----EKLGEYD 204 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~----~~~~~fD 204 (284)
...++|+.+|+|.+|.+....-. ..|..|+.+|.|++.++..++. + ..+.++.||+++.. ....++|
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~--~~~~~v~vid~~~~~~~~~~~~----~---~~~~~i~gd~~~~~~L~~~~~~~a~ 299 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLE--KEGYSVKLIERDPERAEELAEE----L---PNTLVLHGDGTDQELLEEEGIDEAD 299 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH--hCCCeEEEEECCHHHHHHHHHH----C---CCCeEEECCCCCHHHHHhcCCccCC
Confidence 34689999999987766333222 3588999999999988776652 2 24678999987532 2335789
Q ss_pred EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.|+.... - ....-+...+.+.+.+. .++++.
T Consensus 300 ~vi~~~~--~--~~~n~~~~~~~~~~~~~-~ii~~~ 330 (453)
T PRK09496 300 AFIALTN--D--DEANILSSLLAKRLGAK-KVIALV 330 (453)
T ss_pred EEEECCC--C--cHHHHHHHHHHHHhCCC-eEEEEE
Confidence 8875432 1 22223344455666655 455544
No 406
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=94.72 E-value=0.33 Score=44.65 Aligned_cols=97 Identities=20% Similarity=0.255 Sum_probs=65.4
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccc----cccCC
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQV----KEKLG 201 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~----~~~~~ 201 (284)
...++.+||.+|+|.+|..++.+|+ ..|.+ |+.++.+++..+.+++ .|. . .++..+-.+. .....
T Consensus 156 ~~~~g~~vlI~g~g~vg~~~~~la~--~~G~~~v~~~~~~~~~~~~~~~----~g~-~---~~~~~~~~~~~~~~~~~~~ 225 (334)
T cd08234 156 GIKPGDSVLVFGAGPIGLLLAQLLK--LNGASRVTVAEPNEEKLELAKK----LGA-T---ETVDPSREDPEAQKEDNPY 225 (334)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHH--HcCCcEEEEECCCHHHHHHHHH----hCC-e---EEecCCCCCHHHHHHhcCC
Confidence 4578899999999988888899998 46777 8999999887776643 452 2 2222211111 11224
Q ss_pred CccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 202 EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 202 ~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.+|+|+-... ....+....+.|+++|.++.-.
T Consensus 226 ~vd~v~~~~~-------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 226 GFDVVIEATG-------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCcEEEECCC-------ChHHHHHHHHHHhcCCEEEEEe
Confidence 6999985422 1246778889999999988654
No 407
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.72 E-value=0.064 Score=44.00 Aligned_cols=79 Identities=15% Similarity=0.141 Sum_probs=49.4
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI 206 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V 206 (284)
.-.+++|+.||+|..+-..+.-.. ..|++ |+-+.++.+ +|+++++..+. ..++++.- .++...+.++|+|
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~--~~g~~~i~i~nRt~~---ra~~l~~~~~~--~~~~~~~~--~~~~~~~~~~Div 79 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALA--ALGAKEITIVNRTPE---RAEALAEEFGG--VNIEAIPL--EDLEEALQEADIV 79 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHH--HTTSSEEEEEESSHH---HHHHHHHHHTG--CSEEEEEG--GGHCHHHHTESEE
T ss_pred CcCCCEEEEECCHHHHHHHHHHHH--HcCCCEEEEEECCHH---HHHHHHHHcCc--cccceeeH--HHHHHHHhhCCeE
Confidence 357899999999943333222222 34665 999999865 45666666642 35666543 3344445689999
Q ss_pred EecccccCC
Q 036061 207 FLAALVGMS 215 (284)
Q Consensus 207 ~~aa~v~~~ 215 (284)
+.+..++|.
T Consensus 80 I~aT~~~~~ 88 (135)
T PF01488_consen 80 INATPSGMP 88 (135)
T ss_dssp EE-SSTTST
T ss_pred EEecCCCCc
Confidence 988777665
No 408
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=94.69 E-value=0.024 Score=48.68 Aligned_cols=96 Identities=19% Similarity=0.221 Sum_probs=59.7
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
-.+++|..||.|.+|-....+++ ..|++|+++|.++..-. .....+ +++ .+..++ +.+.|+|++
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~--~fG~~V~~~d~~~~~~~----~~~~~~-----~~~--~~l~el---l~~aDiv~~ 97 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLK--AFGMRVIGYDRSPKPEE----GADEFG-----VEY--VSLDEL---LAQADIVSL 97 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHH--HTT-EEEEEESSCHHHH----HHHHTT-----EEE--SSHHHH---HHH-SEEEE
T ss_pred cCCCEEEEEEEcCCcCeEeeeee--cCCceeEEecccCChhh----hccccc-----cee--eehhhh---cchhhhhhh
Confidence 56899999999998887777766 58999999999998755 122222 222 243332 246899986
Q ss_pred cccccCChHHHHHHHHHHHhhcCCCcEEEEEecCc
Q 036061 209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKG 243 (284)
Q Consensus 209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~g 243 (284)
..-. +++.+.-+=++..+.||+|++|| ..+.|
T Consensus 98 ~~pl--t~~T~~li~~~~l~~mk~ga~lv-N~aRG 129 (178)
T PF02826_consen 98 HLPL--TPETRGLINAEFLAKMKPGAVLV-NVARG 129 (178)
T ss_dssp -SSS--STTTTTSBSHHHHHTSTTTEEEE-ESSSG
T ss_pred hhcc--ccccceeeeeeeeeccccceEEE-eccch
Confidence 6432 22223223345667899998765 44444
No 409
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.67 E-value=0.13 Score=48.06 Aligned_cols=97 Identities=9% Similarity=0.153 Sum_probs=55.6
Q ss_pred CCCCEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC----CCCCeEEEEeccccccccCCCc
Q 036061 129 VNPKKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE----FEKRMKFVTCDIMQVKEKLGEY 203 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~----l~~~I~f~~~D~~~~~~~~~~f 203 (284)
...++|+.||+|.+|.+ |..|++ .|..|+.+..++. + + +...|. ...+..+....+...+...+.|
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~---~g~~V~~~~r~~~--~-~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLAR---AGFDVHFLLRSDY--E-A---VRENGLQVDSVHGDFHLPPVQAYRSAEDMPPC 73 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHH---CCCeEEEEEeCCH--H-H---HHhCCeEEEeCCCCeeecCceEEcchhhcCCC
Confidence 34579999999977654 333444 6789999999863 2 1 223341 0011111111111112234579
Q ss_pred cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061 204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLV 238 (284)
Q Consensus 204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~ 238 (284)
|+||++.-. .+-..+++.+...+++++.++.
T Consensus 74 D~vilavK~----~~~~~~~~~l~~~~~~~~~iv~ 104 (313)
T PRK06249 74 DWVLVGLKT----TANALLAPLIPQVAAPDAKVLL 104 (313)
T ss_pred CEEEEEecC----CChHhHHHHHhhhcCCCCEEEE
Confidence 999987422 2224677888888999987654
No 410
>PRK06223 malate dehydrogenase; Reviewed
Probab=94.65 E-value=0.24 Score=46.04 Aligned_cols=102 Identities=22% Similarity=0.248 Sum_probs=59.2
Q ss_pred CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHH--HHHhcCCCCCCeEEE-EeccccccccCCCccEEEe
Q 036061 132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQ--IVSSDIEFEKRMKFV-TCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~--~~~~~G~l~~~I~f~-~~D~~~~~~~~~~fD~V~~ 208 (284)
++|..||+|.+|.+..........+ +|+.+|++++..+ ++. +.+.........++. ++|. .+..+-|+|++
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~~-~~~~dl~~~~~~~~~~~~i~~~~d~----~~~~~aDiVii 76 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVPQ-GKALDIAEAAPVEGFDTKITGTNDY----EDIAGSDVVVI 76 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchhH-HHHHHHHhhhhhcCCCcEEEeCCCH----HHHCCCCEEEE
Confidence 5899999998777755543312224 9999999998753 322 222211111223443 2343 23457899998
Q ss_pred cccccC----C--------hHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 209 AALVGM----S--------KEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 209 aa~v~~----~--------~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
++.++. + .+.+.++++.+.+.. |++.+++-+
T Consensus 77 ~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~t 119 (307)
T PRK06223 77 TAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVT 119 (307)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence 764421 1 244677778888775 666555543
No 411
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.64 E-value=0.12 Score=48.86 Aligned_cols=107 Identities=16% Similarity=0.129 Sum_probs=68.2
Q ss_pred HHHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEE-Eecccccccc
Q 036061 121 RILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFV-TCDIMQVKEK 199 (284)
Q Consensus 121 ~~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~-~~D~~~~~~~ 199 (284)
..|.+++..++++|-.+|.|-+|--++.+|+ -.|.+||+||-++.--+- .++++|. +.=+.+. ..|...-.
T Consensus 172 spLk~~g~~pG~~vgI~GlGGLGh~aVq~AK--AMG~rV~vis~~~~kkee---a~~~LGA-d~fv~~~~d~d~~~~~-- 243 (360)
T KOG0023|consen 172 SPLKRSGLGPGKWVGIVGLGGLGHMAVQYAK--AMGMRVTVISTSSKKKEE---AIKSLGA-DVFVDSTEDPDIMKAI-- 243 (360)
T ss_pred ehhHHcCCCCCcEEEEecCcccchHHHHHHH--HhCcEEEEEeCCchhHHH---HHHhcCc-ceeEEecCCHHHHHHH--
Confidence 3455566789999999999999999999999 479999999999754443 3446773 2222222 22322111
Q ss_pred CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 200 LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 200 ~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.+..|.++-.... . -..-++.+.++||++|.+++-.
T Consensus 244 ~~~~dg~~~~v~~-~----a~~~~~~~~~~lk~~Gt~V~vg 279 (360)
T KOG0023|consen 244 MKTTDGGIDTVSN-L----AEHALEPLLGLLKVNGTLVLVG 279 (360)
T ss_pred HHhhcCcceeeee-c----cccchHHHHHHhhcCCEEEEEe
Confidence 1234444311110 0 1224577888999999999876
No 412
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=94.63 E-value=0.24 Score=45.35 Aligned_cols=99 Identities=15% Similarity=0.144 Sum_probs=64.6
Q ss_pred CCCCCEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc-ccc-cCCCcc
Q 036061 128 VVNPKKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ-VKE-KLGEYD 204 (284)
Q Consensus 128 ~~~~~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~-~~~-~~~~fD 204 (284)
..++.+||..| +|++|..++.+|+ ..|++|++++.+++..+.+++ .+| ...-+.....+..+ +.. ..+.+|
T Consensus 143 ~~~~~~vlI~g~~g~ig~~~~~~a~--~~G~~vi~~~~~~~~~~~~~~---~~g-~~~~~~~~~~~~~~~v~~~~~~~~d 216 (329)
T cd05288 143 PKPGETVVVSAAAGAVGSVVGQIAK--LLGARVVGIAGSDEKCRWLVE---ELG-FDAAINYKTPDLAEALKEAAPDGID 216 (329)
T ss_pred CCCCCEEEEecCcchHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHh---hcC-CceEEecCChhHHHHHHHhccCCce
Confidence 46778999999 6899999999998 478899999999887666654 245 21111211111111 010 014699
Q ss_pred EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+|+-... . ..+....+.++++|+++.-.
T Consensus 217 ~vi~~~g------~--~~~~~~~~~l~~~G~~v~~g 244 (329)
T cd05288 217 VYFDNVG------G--EILDAALTLLNKGGRIALCG 244 (329)
T ss_pred EEEEcch------H--HHHHHHHHhcCCCceEEEEe
Confidence 9884322 1 36778889999999988654
No 413
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.63 E-value=0.72 Score=40.18 Aligned_cols=105 Identities=17% Similarity=0.192 Sum_probs=63.7
Q ss_pred CCCEEEEeccCCChhHHHHHHhhc-CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc----------
Q 036061 130 NPKKVAFVGSGPMPLTSIVMAKNH-LKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE---------- 198 (284)
Q Consensus 130 ~~~~VL~IGsG~lp~tai~LA~~~-~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~---------- 198 (284)
++++|+..|++ .++.. .+++.. ..|++|++++.+++..+...+..... .++.++.+|+.+...
T Consensus 4 ~~~~vlItGa~-g~iG~-~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~ 77 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGY-AVAYFALKEGAQVCINSRNENKLKRMKKTLSKY----GNIHYVVGDVSSTESARNVIEKAAK 77 (238)
T ss_pred CCcEEEEECCC-chHHH-HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCeEEEECCCCCHHHHHHHHHHHHH
Confidence 46799999986 23332 233322 37999999999988766554433332 268899999875221
Q ss_pred cCCCccEEEecccccC--ChHHH--------------HHHHHHHHhhcCCCcEEEEEe
Q 036061 199 KLGEYDCIFLAALVGM--SKEEK--------------VKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 199 ~~~~fD~V~~aa~v~~--~~~~k--------------~~il~~l~~~l~pGg~lv~r~ 240 (284)
..+..|.++.++.... ...+. ..+++.+.+.++++|.+++-+
T Consensus 78 ~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 78 VLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred HhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 1235688876654211 11111 234666777788888777766
No 414
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.60 E-value=0.39 Score=46.69 Aligned_cols=95 Identities=15% Similarity=0.102 Sum_probs=63.4
Q ss_pred CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc----ccCCCccEEE
Q 036061 132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK----EKLGEYDCIF 207 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~----~~~~~fD~V~ 207 (284)
++|+.+|+|.+|........ ..|..|+.+|.|++.++.+++ .. .++++.||+++.. ....++|.|+
T Consensus 1 m~viIiG~G~ig~~~a~~L~--~~g~~v~vid~~~~~~~~~~~---~~-----~~~~~~gd~~~~~~l~~~~~~~a~~vi 70 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLS--GENNDVTVIDTDEERLRRLQD---RL-----DVRTVVGNGSSPDVLREAGAEDADLLI 70 (453)
T ss_pred CEEEEECCCHHHHHHHHHHH--hCCCcEEEEECCHHHHHHHHh---hc-----CEEEEEeCCCCHHHHHHcCCCcCCEEE
Confidence 47999999987766444322 368899999999998776554 23 3678889986522 1245789887
Q ss_pred ecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
++.. .......+....+.+.|.-.++++.
T Consensus 71 ~~~~----~~~~n~~~~~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 71 AVTD----SDETNMVACQIAKSLFGAPTTIARV 99 (453)
T ss_pred EecC----ChHHHHHHHHHHHHhcCCCeEEEEE
Confidence 6532 1334445566677776777777765
No 415
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=94.59 E-value=0.1 Score=49.43 Aligned_cols=100 Identities=17% Similarity=0.211 Sum_probs=65.8
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc-ccc-cCCCc
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ-VKE-KLGEY 203 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~-~~~-~~~~f 203 (284)
...++++||..|+|++|..++.+|+ ..|+ .|+++|.+++..+.+++ .|. ..-+.....+..+ +.. ....+
T Consensus 183 ~~~~g~~vlI~g~g~vG~~~~~la~--~~G~~~v~~~~~~~~k~~~~~~----~g~-~~~i~~~~~~~~~~v~~~~~~~~ 255 (365)
T cd08278 183 KPRPGSSIAVFGAGAVGLAAVMAAK--IAGCTTIIAVDIVDSRLELAKE----LGA-THVINPKEEDLVAAIREITGGGV 255 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHH--HcCCCeEEEEeCCHHHHHHHHH----cCC-cEEecCCCcCHHHHHHHHhCCCC
Confidence 3467899999999999999999999 4677 69999999988776654 452 1111111111111 111 12369
Q ss_pred cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
|+|+-+..- ...+....+.++++|.++.-.
T Consensus 256 d~vld~~g~-------~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 256 DYALDTTGV-------PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred cEEEECCCC-------cHHHHHHHHHhccCCEEEEeC
Confidence 999854321 135688899999999988754
No 416
>PRK06545 prephenate dehydrogenase; Validated
Probab=94.58 E-value=0.15 Score=48.79 Aligned_cols=91 Identities=20% Similarity=0.220 Sum_probs=55.2
Q ss_pred CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEeccc
Q 036061 132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAAL 211 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~ 211 (284)
++|.+||+|.+|.+-....+ ..|..|..+|.|+...+.++. ...|. .+. ...|. .....+.|+||++.-
T Consensus 1 ~~I~iIG~GliG~siA~~L~--~~G~~v~i~~~~~~~~~~~~a--~~~~~-~~~---~~~~~---~~~~~~aDlVilavP 69 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIK--AAGPDVFIIGYDPSAAQLARA--LGFGV-IDE---LAADL---QRAAAEADLIVLAVP 69 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHH--hcCCCeEEEEeCCCHHHHHHH--hcCCC-Ccc---cccCH---HHHhcCCCEEEEeCC
Confidence 47999999988866333322 355667777777766554442 23331 111 11222 122356899998765
Q ss_pred ccCChHHHHHHHHHHHh-hcCCCcEEE
Q 036061 212 VGMSKEEKVKIIKHIRK-YMKDGGVLL 237 (284)
Q Consensus 212 v~~~~~~k~~il~~l~~-~l~pGg~lv 237 (284)
. .....+++++.+ .++||.++.
T Consensus 70 ~----~~~~~vl~~l~~~~l~~~~ivt 92 (359)
T PRK06545 70 V----DATAALLAELADLELKPGVIVT 92 (359)
T ss_pred H----HHHHHHHHHHhhcCCCCCcEEE
Confidence 4 567788999987 488885544
No 417
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=94.55 E-value=0.61 Score=41.03 Aligned_cols=101 Identities=16% Similarity=0.157 Sum_probs=61.2
Q ss_pred CCCEEEEeccCCChh-HHHHHHhhcCCCc-EEEEEeCC---hHHHHH---------------HHHHHHhcCCCCCCeEEE
Q 036061 130 NPKKVAFVGSGPMPL-TSIVMAKNHLKST-HFDNFDID---EAANDV---------------ARQIVSSDIEFEKRMKFV 189 (284)
Q Consensus 130 ~~~~VL~IGsG~lp~-tai~LA~~~~~g~-~V~~iDid---~~ai~~---------------Ar~~~~~~G~l~~~I~f~ 189 (284)
...+|+.||||.+|- .+..||+ .|. +++-+|.| +..+.+ +++.+.+.. ..-+++.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~---~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~in-p~~~i~~~ 95 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLAR---AGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEIN-PYTEIEAY 95 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHH---cCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHC-CCCEEEEe
Confidence 568999999996554 3444555 676 69999999 333222 333344433 12345554
Q ss_pred Eecccc--ccccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEE
Q 036061 190 TCDIMQ--VKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLL 237 (284)
Q Consensus 190 ~~D~~~--~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv 237 (284)
..++.+ +...+.++|+|+.+. -+.+.|..+++.+.+.+++.-++.
T Consensus 96 ~~~i~~~~~~~~~~~~DlVi~a~---Dn~~~k~~l~~~~~~~~~~~~ii~ 142 (200)
T TIGR02354 96 DEKITEENIDKFFKDADIVCEAF---DNAEAKAMLVNAVLEKYKDKYLIA 142 (200)
T ss_pred eeeCCHhHHHHHhcCCCEEEECC---CCHHHHHHHHHHHHHHcCCCcEEE
Confidence 444432 111245799998762 234778888999999887644443
No 418
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=94.54 E-value=0.2 Score=46.44 Aligned_cols=100 Identities=22% Similarity=0.252 Sum_probs=64.6
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc--cCCCc
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--KLGEY 203 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--~~~~f 203 (284)
...++.+||..|+|.+|..++.+|+ ..|.+ |++++.+++..+..+ ..| ...-+........++.. .-..+
T Consensus 156 ~~~~~~~vlI~g~g~~g~~~~~lA~--~~G~~~v~~~~~~~~~~~~l~----~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 228 (343)
T cd08236 156 GITLGDTVVVIGAGTIGLLAIQWLK--ILGAKRVIAVDIDDEKLAVAR----ELG-ADDTINPKEEDVEKVRELTEGRGA 228 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHH--HcCCCEEEEEcCCHHHHHHHH----HcC-CCEEecCccccHHHHHHHhCCCCC
Confidence 4567889999999988999999998 46786 999999887766554 345 21111111111111111 11249
Q ss_pred cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
|+|+-+.. . ...+..+.+.|+++|+++.-.
T Consensus 229 d~vld~~g-----~--~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 229 DLVIEAAG-----S--PATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CEEEECCC-----C--HHHHHHHHHHhhcCCEEEEEc
Confidence 99985422 1 235678899999999988654
No 419
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.54 E-value=0.22 Score=47.16 Aligned_cols=107 Identities=14% Similarity=0.169 Sum_probs=65.3
Q ss_pred CCCEEEEecc-CCChhHHHHHHhhcCCCc-----EEEEEeCChH---HHHHHHHHHHhcCCCCCCeEEEEeccccccccC
Q 036061 130 NPKKVAFVGS-GPMPLTSIVMAKNHLKST-----HFDNFDIDEA---ANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL 200 (284)
Q Consensus 130 ~~~~VL~IGs-G~lp~tai~LA~~~~~g~-----~V~~iDid~~---ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~ 200 (284)
+|.+|..||+ |..|.+..+..-....-. .++-+|+.+. +...|..+.+....+..++++..+| ..++
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~----~~~~ 76 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDP----NVAF 76 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCc----HHHh
Confidence 4789999999 988887655332111222 7999999543 5667777666552122345654333 2355
Q ss_pred CCccEEEecccc----cCChHH--------HHHHHHHHHhhcCCCcEEEEEe
Q 036061 201 GEYDCIFLAALV----GMSKEE--------KVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 201 ~~fD~V~~aa~v----~~~~~~--------k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.+.|+|++.+.+ +++..+ -.++...+.++-.|.|++++-+
T Consensus 77 ~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (322)
T cd01338 77 KDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG 128 (322)
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 678999988765 444322 2344455555533588877765
No 420
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=94.50 E-value=0.15 Score=48.61 Aligned_cols=100 Identities=22% Similarity=0.240 Sum_probs=65.8
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEe---c----cccccc
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTC---D----IMQVKE 198 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~---D----~~~~~~ 198 (284)
...++.+||..|+|++|..++.+|+ ..|+ +|++++.+++..+.++ ++| ...-+..... + +.+..
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~--~~G~~~vi~~~~~~~~~~~~~----~~g-~~~~v~~~~~~~~~~~~~v~~~~- 271 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAK--AAGASKVIAFEISEERRNLAK----EMG-ADYVFNPTKMRDCLSGEKVMEVT- 271 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHH--HcCCCEEEEEcCCHHHHHHHH----HcC-CCEEEcccccccccHHHHHHHhc-
Confidence 4577899999999999999999999 4677 7999999988654444 456 3211111111 1 11111
Q ss_pred cCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 199 KLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 199 ~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
....+|+|+-+ .+ .....+.+..+.|+++|+++.-.
T Consensus 272 ~g~gvDvvld~--~g----~~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 272 KGWGADIQVEA--AG----APPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred CCCCCCEEEEC--CC----CcHHHHHHHHHHHHcCCEEEEEC
Confidence 11359988743 32 22346778889999999998754
No 421
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.48 E-value=0.25 Score=47.97 Aligned_cols=101 Identities=21% Similarity=0.368 Sum_probs=69.7
Q ss_pred CEEEEeccCCChh-HHHHHHhhcCCCcEEEEEeCChHHHHHHHH------------HHHhcCCCCCCeEEEEeccccccc
Q 036061 132 KKVAFVGSGPMPL-TSIVMAKNHLKSTHFDNFDIDEAANDVARQ------------IVSSDIEFEKRMKFVTCDIMQVKE 198 (284)
Q Consensus 132 ~~VL~IGsG~lp~-tai~LA~~~~~g~~V~~iDid~~ai~~Ar~------------~~~~~G~l~~~I~f~~~D~~~~~~ 198 (284)
+||..+|+|=.|+ ++.+||+ .|..|+|+|+|+.-++.=++ ++++.. ...|.+|- .|. ..
T Consensus 1 MkI~viGtGYVGLv~g~~lA~---~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~-~~gRl~fT-td~---~~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAE---LGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENL-ASGRLRFT-TDY---EE 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHH---cCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhcc-ccCcEEEE-cCH---HH
Confidence 5789999995554 6788888 88999999999998887543 333333 23457773 333 23
Q ss_pred cCCCccEEEecccccC------ChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 199 KLGEYDCIFLAALVGM------SKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 199 ~~~~fD~V~~aa~v~~------~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.....|++|++..-.. +..--+.+.+.+..+++...+++..|
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KS 120 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKS 120 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcC
Confidence 3456799998753211 22333778889999988888888877
No 422
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.47 E-value=0.11 Score=51.78 Aligned_cols=74 Identities=11% Similarity=0.027 Sum_probs=52.0
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
.++++|+.+|.|..|++++.+.+ ..|++|++.|..+...+. ++..| +++..++.. ...+..+|+|+.
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~--~~G~~v~~~D~~~~~~~~----l~~~g-----~~~~~~~~~--~~~l~~~D~VV~ 76 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALT--RFGARPTVCDDDPDALRP----HAERG-----VATVSTSDA--VQQIADYALVVT 76 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHH--HCCCEEEEEcCCHHHHHH----HHhCC-----CEEEcCcch--HhHhhcCCEEEE
Confidence 46789999999999999987766 588999999987665332 33345 355544321 223456899999
Q ss_pred cccccCC
Q 036061 209 AALVGMS 215 (284)
Q Consensus 209 aa~v~~~ 215 (284)
+..+..+
T Consensus 77 SpGi~~~ 83 (488)
T PRK03369 77 SPGFRPT 83 (488)
T ss_pred CCCCCCC
Confidence 8887443
No 423
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=94.47 E-value=0.17 Score=49.05 Aligned_cols=72 Identities=14% Similarity=0.128 Sum_probs=53.5
Q ss_pred CEEEEeccCCChhHHHHH-HhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc---cCCCccEEE
Q 036061 132 KKVAFVGSGPMPLTSIVM-AKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE---KLGEYDCIF 207 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai~L-A~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~---~~~~fD~V~ 207 (284)
++||-||||..|-++... |+ ....+|+..|.+++..+.+... .+ .++++++-|+.+... -++++|+|+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~--~~d~~V~iAdRs~~~~~~i~~~---~~---~~v~~~~vD~~d~~al~~li~~~d~VI 73 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQ--NGDGEVTIADRSKEKCARIAEL---IG---GKVEALQVDAADVDALVALIKDFDLVI 73 (389)
T ss_pred CcEEEECCchhHHHHHHHHHh--CCCceEEEEeCCHHHHHHHHhh---cc---ccceeEEecccChHHHHHHHhcCCEEE
Confidence 589999999887776655 54 2338999999998887777663 22 388999999987543 346789999
Q ss_pred eccc
Q 036061 208 LAAL 211 (284)
Q Consensus 208 ~aa~ 211 (284)
.++.
T Consensus 74 n~~p 77 (389)
T COG1748 74 NAAP 77 (389)
T ss_pred EeCC
Confidence 6653
No 424
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=94.47 E-value=0.21 Score=46.24 Aligned_cols=99 Identities=21% Similarity=0.268 Sum_probs=65.9
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc-cc--ccCCCc
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ-VK--EKLGEY 203 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~-~~--~~~~~f 203 (284)
...++.+||..|+|.+|..++.+|+ ..|.+|+++..+++..+..++ .| ...-+.....+..+ +. .....+
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~--~~g~~v~~~~~s~~~~~~~~~----~g-~~~v~~~~~~~~~~~l~~~~~~~~v 228 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAK--ARGARVIVVDIDDERLEFARE----LG-ADDTINVGDEDVAARLRELTDGEGA 228 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHH--HcCCeEEEECCCHHHHHHHHH----hC-CCEEecCcccCHHHHHHHHhCCCCC
Confidence 4577889999999988999999999 468999999888887776644 34 11112222222111 11 112359
Q ss_pred cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061 204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR 239 (284)
Q Consensus 204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r 239 (284)
|+++....- ...+..+.+.|+++|.++.-
T Consensus 229 d~vld~~g~-------~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 229 DVVIDATGN-------PASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred CEEEECCCC-------HHHHHHHHHHHhcCCEEEEE
Confidence 999865321 23568889999999998864
No 425
>PRK05442 malate dehydrogenase; Provisional
Probab=94.44 E-value=0.25 Score=46.79 Aligned_cols=107 Identities=15% Similarity=0.170 Sum_probs=65.9
Q ss_pred CCCCEEEEecc-CCChhHHHHH-HhhcCCC----cEEEEEeCChH---HHHHHHHHHHhc-CCCCCCeEEEEeccccccc
Q 036061 129 VNPKKVAFVGS-GPMPLTSIVM-AKNHLKS----THFDNFDIDEA---ANDVARQIVSSD-IEFEKRMKFVTCDIMQVKE 198 (284)
Q Consensus 129 ~~~~~VL~IGs-G~lp~tai~L-A~~~~~g----~~V~~iDid~~---ai~~Ar~~~~~~-G~l~~~I~f~~~D~~~~~~ 198 (284)
+.|.+|..||+ |..|.+..+. +..-..+ ..++-+|+.+. +-..|..+.+.. . +..++++..+|- .
T Consensus 2 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~-~~~~~~i~~~~y----~ 76 (326)
T PRK05442 2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFP-LLAGVVITDDPN----V 76 (326)
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhh-hcCCcEEecChH----H
Confidence 56889999998 9988885442 2211111 27999999653 566777776655 3 223555554332 3
Q ss_pred cCCCccEEEecccc----cCChHH--------HHHHHHHHHhhcCCCcEEEEEe
Q 036061 199 KLGEYDCIFLAALV----GMSKEE--------KVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 199 ~~~~fD~V~~aa~v----~~~~~~--------k~~il~~l~~~l~pGg~lv~r~ 240 (284)
++++.|+|++.+.+ +++..+ -.++.+.+.++-+|.|.+++-+
T Consensus 77 ~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 130 (326)
T PRK05442 77 AFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG 130 (326)
T ss_pred HhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 45678999987765 444333 1344455555545688888766
No 426
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=94.40 E-value=0.4 Score=42.85 Aligned_cols=94 Identities=14% Similarity=0.123 Sum_probs=61.1
Q ss_pred CCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc--ccCCCcc
Q 036061 128 VVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK--EKLGEYD 204 (284)
Q Consensus 128 ~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~--~~~~~fD 204 (284)
..++.+|+..|+ |++|..++.+|+ ..|.+|++++.++ ..+.+ +..| .. .+......+.. .....+|
T Consensus 142 ~~~~~~vlv~g~~g~~g~~~~~~a~--~~g~~v~~~~~~~-~~~~~----~~~g-~~---~~~~~~~~~~~~~~~~~~~d 210 (309)
T cd05289 142 LKAGQTVLIHGAAGGVGSFAVQLAK--ARGARVIATASAA-NADFL----RSLG-AD---EVIDYTKGDFERAAAPGGVD 210 (309)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHH--HcCCEEEEEecch-hHHHH----HHcC-CC---EEEeCCCCchhhccCCCCce
Confidence 567899999996 889999998988 4789999988766 44443 4456 21 12221111111 1223589
Q ss_pred EEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 205 CIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 205 ~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+++-... . .......+.++++|.++.-.
T Consensus 211 ~v~~~~~-----~---~~~~~~~~~l~~~g~~v~~g 238 (309)
T cd05289 211 AVLDTVG-----G---ETLARSLALVKPGGRLVSIA 238 (309)
T ss_pred EEEECCc-----h---HHHHHHHHHHhcCcEEEEEc
Confidence 8885422 1 15677888999999988653
No 427
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=94.35 E-value=0.64 Score=42.95 Aligned_cols=99 Identities=17% Similarity=0.185 Sum_probs=64.2
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc-cc--ccCCC
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ-VK--EKLGE 202 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~-~~--~~~~~ 202 (284)
...++.+||..|+|.+|..++.+|+ ..|. +|++++.+++..+.+++ +|. .-+.....+... +. .....
T Consensus 164 ~~~~~~~vlI~g~g~vg~~~~~~a~--~~g~~~v~~~~~~~~~~~~~~~----~g~--~~~~~~~~~~~~~l~~~~~~~~ 235 (344)
T cd08284 164 QVRPGDTVAVIGCGPVGLCAVLSAQ--VLGAARVFAVDPVPERLERAAA----LGA--EPINFEDAEPVERVREATEGRG 235 (344)
T ss_pred CCccCCEEEEECCcHHHHHHHHHHH--HcCCceEEEEcCCHHHHHHHHH----hCC--eEEecCCcCHHHHHHHHhCCCC
Confidence 3467899999999999999999999 4675 89999888877655544 562 111111111100 11 11235
Q ss_pred ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+|+|+-+..- ...+....+.|+++|+++.-.
T Consensus 236 ~dvvid~~~~-------~~~~~~~~~~l~~~g~~v~~g 266 (344)
T cd08284 236 ADVVLEAVGG-------AAALDLAFDLVRPGGVISSVG 266 (344)
T ss_pred CCEEEECCCC-------HHHHHHHHHhcccCCEEEEEC
Confidence 9998854321 235778888999999987643
No 428
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=94.34 E-value=0.43 Score=43.97 Aligned_cols=96 Identities=18% Similarity=0.244 Sum_probs=65.5
Q ss_pred CCCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061 127 GVVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC 205 (284)
Q Consensus 127 ~~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~ 205 (284)
...++.+|+..|+ |++|..++.+|+ ..|++|++++.+++..+.+++++... +..+ .+ ..++.. ++.+|+
T Consensus 159 ~~~~~~~vlI~g~~g~~g~~~~~la~--~~g~~vi~~~~~~~~~~~~~~~~~~~--~~~~-~~----~~~v~~-~~~~d~ 228 (334)
T PRK13771 159 GVKKGETVLVTGAGGGVGIHAIQVAK--ALGAKVIAVTSSESKAKIVSKYADYV--IVGS-KF----SEEVKK-IGGADI 228 (334)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHHHHHHh--cCch-hH----HHHHHh-cCCCcE
Confidence 4567899999999 799999999999 46899999999999988887752111 1111 11 011111 235898
Q ss_pred EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
++-+.. . ..+..+.+.+++||.++.-.
T Consensus 229 ~ld~~g-----~---~~~~~~~~~l~~~G~~v~~g 255 (334)
T PRK13771 229 VIETVG-----T---PTLEESLRSLNMGGKIIQIG 255 (334)
T ss_pred EEEcCC-----h---HHHHHHHHHHhcCCEEEEEe
Confidence 884322 1 24678888899999988643
No 429
>PLN02688 pyrroline-5-carboxylate reductase
Probab=94.33 E-value=0.22 Score=45.04 Aligned_cols=86 Identities=22% Similarity=0.299 Sum_probs=54.6
Q ss_pred CEEEEeccCCChhHHHHHHhhc-CCCc----EEEEE-eCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061 132 KKVAFVGSGPMPLTSIVMAKNH-LKST----HFDNF-DIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC 205 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai~LA~~~-~~g~----~V~~i-Did~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~ 205 (284)
++|.+||+|.+|.+ +++.. ..|. +|+.+ |.+++..+.+ .+.|. +. ..|..+. ..+.|+
T Consensus 1 ~kI~~IG~G~mG~a---~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~----~~~g~-----~~-~~~~~e~---~~~aDv 64 (266)
T PLN02688 1 FRVGFIGAGKMAEA---IARGLVASGVVPPSRISTADDSNPARRDVF----QSLGV-----KT-AASNTEV---VKSSDV 64 (266)
T ss_pred CeEEEECCcHHHHH---HHHHHHHCCCCCcceEEEEeCCCHHHHHHH----HHcCC-----EE-eCChHHH---HhcCCE
Confidence 47999999987754 22211 1344 78888 9998775443 23452 22 2232222 235799
Q ss_pred EEecccccCChHHHHHHHHHHHhhcCCCcEEE
Q 036061 206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLL 237 (284)
Q Consensus 206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv 237 (284)
||++.. +....+++..+...+++|..++
T Consensus 65 Vil~v~----~~~~~~vl~~l~~~~~~~~~iI 92 (266)
T PLN02688 65 IILAVK----PQVVKDVLTELRPLLSKDKLLV 92 (266)
T ss_pred EEEEEC----cHHHHHHHHHHHhhcCCCCEEE
Confidence 998653 3667888888888888887655
No 430
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=94.32 E-value=0.22 Score=45.66 Aligned_cols=94 Identities=14% Similarity=0.112 Sum_probs=60.7
Q ss_pred cCCCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecc-ccccccCCCc
Q 036061 126 NGVVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDI-MQVKEKLGEY 203 (284)
Q Consensus 126 ~~~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~-~~~~~~~~~f 203 (284)
....++.+|+.+|+ |++|..++.+|+ ..|.+|++++.+ +.++.+|. .. .+-..+. ..+....+.+
T Consensus 158 ~~~~~g~~vlI~g~~g~vg~~~~~~a~--~~G~~v~~~~~~--------~~~~~~g~-~~--~~~~~~~~~~l~~~~~~~ 224 (325)
T cd08264 158 AGLGPGETVVVFGASGNTGIFAVQLAK--MMGAEVIAVSRK--------DWLKEFGA-DE--VVDYDEVEEKVKEITKMA 224 (325)
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHH--HcCCeEEEEeHH--------HHHHHhCC-Ce--eecchHHHHHHHHHhCCC
Confidence 45678899999997 999999999999 468889888622 33345662 11 1111111 1111111468
Q ss_pred cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
|+|+-+.. . ..+....+.|+++|.++.-.
T Consensus 225 d~vl~~~g------~--~~~~~~~~~l~~~g~~v~~g 253 (325)
T cd08264 225 DVVINSLG------S--SFWDLSLSVLGRGGRLVTFG 253 (325)
T ss_pred CEEEECCC------H--HHHHHHHHhhccCCEEEEEe
Confidence 99884322 1 36788899999999998754
No 431
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.30 E-value=0.45 Score=44.68 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=64.3
Q ss_pred EEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChH-HHHHHHHHHHhcCCCC-CCeEEEEeccccccccCCCccEEEecc
Q 036061 133 KVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEA-ANDVARQIVSSDIEFE-KRMKFVTCDIMQVKEKLGEYDCIFLAA 210 (284)
Q Consensus 133 ~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~-ai~~Ar~~~~~~G~l~-~~I~f~~~D~~~~~~~~~~fD~V~~aa 210 (284)
+|..||+|..|.+..++.-.......++-+|++++ +-..|..+.+...... .++++..+|.. ++++.|+|++.+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~----~~~~aDivvita 76 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYD----DCADADIIVITA 76 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHH----HhCCCCEEEECC
Confidence 57899999888877443321233457999999766 5566777666554221 35777777643 456789999887
Q ss_pred cc----cCCh------HHH----HHHHHHHHhhcCCCcEEEEEe
Q 036061 211 LV----GMSK------EEK----VKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 211 ~v----~~~~------~~k----~~il~~l~~~l~pGg~lv~r~ 240 (284)
.+ ||+. ..- .++.+.+.++ .|+|.+++-+
T Consensus 77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~-~p~~i~ivvs 119 (307)
T cd05290 77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKV-TKEAVIILIT 119 (307)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEec
Confidence 65 4542 112 3344445544 4778877755
No 432
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=94.29 E-value=0.16 Score=47.43 Aligned_cols=91 Identities=16% Similarity=0.229 Sum_probs=59.7
Q ss_pred CEEEEeccCCChhHHHHHHhhc-CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061 132 KKVAFVGSGPMPLTSIVMAKNH-LKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA 210 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai~LA~~~-~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa 210 (284)
.+|.|||-|.+|.. +|++. ..|..|+.+|.+++.. .+.+...|. +..... . ..-...|+||.+-
T Consensus 1 ~kIafIGLG~MG~p---mA~~L~~aG~~v~v~~r~~~ka---~~~~~~~Ga-----~~a~s~-~---eaa~~aDvVitmv 65 (286)
T COG2084 1 MKIAFIGLGIMGSP---MAANLLKAGHEVTVYNRTPEKA---AELLAAAGA-----TVAASP-A---EAAAEADVVITML 65 (286)
T ss_pred CeEEEEcCchhhHH---HHHHHHHCCCEEEEEeCChhhh---hHHHHHcCC-----cccCCH-H---HHHHhCCEEEEec
Confidence 47999999988766 55543 4689999999998872 333334552 111111 1 1124689998653
Q ss_pred cccCChHHHHHHH---HHHHhhcCCCcEEEEEe
Q 036061 211 LVGMSKEEKVKII---KHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 211 ~v~~~~~~k~~il---~~l~~~l~pGg~lv~r~ 240 (284)
. +..+-..++ .-+...++||.++|-.+
T Consensus 66 ~---~~~~V~~V~~g~~g~~~~~~~G~i~IDmS 95 (286)
T COG2084 66 P---DDAAVRAVLFGENGLLEGLKPGAIVIDMS 95 (286)
T ss_pred C---CHHHHHHHHhCccchhhcCCCCCEEEECC
Confidence 2 235556666 56888999999998866
No 433
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=94.26 E-value=0.44 Score=45.14 Aligned_cols=107 Identities=20% Similarity=0.200 Sum_probs=67.4
Q ss_pred CCCEEEEecc-CCChhHHHHHHhhcCCCc-----EEEEEeCCh---HHHHHHHHHHHhcCCCCCCeEEEEeccccccccC
Q 036061 130 NPKKVAFVGS-GPMPLTSIVMAKNHLKST-----HFDNFDIDE---AANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL 200 (284)
Q Consensus 130 ~~~~VL~IGs-G~lp~tai~LA~~~~~g~-----~V~~iDid~---~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~ 200 (284)
.|-+|..||+ |..|.+..........-. .++-+|+.+ .+...|..+.+........+++..+|. .++
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~----~~~ 77 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPE----EAF 77 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChH----HHh
Confidence 5789999998 988888655433111112 799999964 267777777766521223455443332 345
Q ss_pred CCccEEEecccc----cCChHH--------HHHHHHHHHhhcCCCcEEEEEe
Q 036061 201 GEYDCIFLAALV----GMSKEE--------KVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 201 ~~fD~V~~aa~v----~~~~~~--------k~~il~~l~~~l~pGg~lv~r~ 240 (284)
++.|+|++.+.+ +++..+ -.++.+.+.++-.|.|++++-+
T Consensus 78 ~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 129 (323)
T TIGR01759 78 KDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG 129 (323)
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 678999988765 444433 2456666666644488888866
No 434
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=94.26 E-value=0.5 Score=46.37 Aligned_cols=75 Identities=27% Similarity=0.360 Sum_probs=51.9
Q ss_pred CEEEEeccCCChhHHHHHHh-----hcCCCcEEEEEeCC-hHHHHH----HHHHHHhcCCCCCCeEEEE-eccccccccC
Q 036061 132 KKVAFVGSGPMPLTSIVMAK-----NHLKSTHFDNFDID-EAANDV----ARQIVSSDIEFEKRMKFVT-CDIMQVKEKL 200 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai~LA~-----~~~~g~~V~~iDid-~~ai~~----Ar~~~~~~G~l~~~I~f~~-~D~~~~~~~~ 200 (284)
.||..||.|.. +|...+.. ..+++.+|+-+||| ++.++. +++++++.|. .+++.. .|. ...+
T Consensus 1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~---~~~v~~t~d~---~~al 73 (419)
T cd05296 1 MKLTIIGGGSS-YTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGL---PIKVHLTTDR---REAL 73 (419)
T ss_pred CEEEEECCchH-hHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCC---CeEEEEeCCH---HHHh
Confidence 47999999964 66554432 12567999999999 788754 7777777772 566653 343 3445
Q ss_pred CCccEEEeccccc
Q 036061 201 GEYDCIFLAALVG 213 (284)
Q Consensus 201 ~~fD~V~~aa~v~ 213 (284)
.+-|+|+....+|
T Consensus 74 ~gadfVi~~~~vg 86 (419)
T cd05296 74 EGADFVFTQIRVG 86 (419)
T ss_pred CCCCEEEEEEeeC
Confidence 5679999888773
No 435
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=94.25 E-value=0.099 Score=51.34 Aligned_cols=96 Identities=17% Similarity=0.223 Sum_probs=64.4
Q ss_pred CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CCccEEEecc
Q 036061 132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GEYDCIFLAA 210 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~fD~V~~aa 210 (284)
--||+||+|+ |+-+++-++ +. +-.||+++.=..|.+.||+...+.| .+++|+++.---+++.-.. ..-|++.-.-
T Consensus 68 v~vLdigtGT-GLLSmMAvr-ag-aD~vtA~EvfkPM~d~arkI~~kng-~SdkI~vInkrStev~vg~~~RadI~v~e~ 143 (636)
T KOG1501|consen 68 VFVLDIGTGT-GLLSMMAVR-AG-ADSVTACEVFKPMVDLARKIMHKNG-MSDKINVINKRSTEVKVGGSSRADIAVRED 143 (636)
T ss_pred EEEEEccCCc-cHHHHHHHH-hc-CCeEEeehhhchHHHHHHHHHhcCC-CccceeeeccccceeeecCcchhhhhhHhh
Confidence 4689999997 666676666 23 4569999999999999999999999 8999999876666554321 1245543111
Q ss_pred ----cccCChHHHHHHHHHHHhhcCCCc
Q 036061 211 ----LVGMSKEEKVKIIKHIRKYMKDGG 234 (284)
Q Consensus 211 ----~v~~~~~~k~~il~~l~~~l~pGg 234 (284)
++| +--..-+++.+++|...+
T Consensus 144 fdtElig---eGalps~qhAh~~L~~~n 168 (636)
T KOG1501|consen 144 FDTELIG---EGALPSLQHAHDMLLVDN 168 (636)
T ss_pred hhhhhhc---cccchhHHHHHHHhcccC
Confidence 222 112334566666655443
No 436
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=94.24 E-value=0.17 Score=44.80 Aligned_cols=114 Identities=14% Similarity=0.101 Sum_probs=67.2
Q ss_pred HHHhcCCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHH---HHH-HHHH-HHhcCCCCCCeEEEEeccccc
Q 036061 122 ILDENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAA---NDV-ARQI-VSSDIEFEKRMKFVTCDIMQV 196 (284)
Q Consensus 122 ~l~~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~a---i~~-Ar~~-~~~~G~l~~~I~f~~~D~~~~ 196 (284)
.|.-++++++++|.|+=-|.+-+| ..++....+...|+++=..+-. +.. .+.. +.+.. ...+++.+-.+...+
T Consensus 40 ~L~FaGlkpg~tVid~~PGgGy~T-rI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~-~~aN~e~~~~~~~A~ 117 (238)
T COG4798 40 VLAFAGLKPGATVIDLIPGGGYFT-RIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP-VYANVEVIGKPLVAL 117 (238)
T ss_pred eeEEeccCCCCEEEEEecCCccHh-hhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh-hhhhhhhhCCccccc
Confidence 444557899999999987754455 4577766677788887655431 111 1111 11111 223444444444333
Q ss_pred cccCCCccEEEe--------cccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 197 KEKLGEYDCIFL--------AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 197 ~~~~~~fD~V~~--------aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
. ....-|+++. ...+ +...-.++..++++.|||||++++.+
T Consensus 118 ~-~pq~~d~~~~~~~yhdmh~k~i--~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 118 G-APQKLDLVPTAQNYHDMHNKNI--HPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred C-CCCcccccccchhhhhhhcccc--CcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 3 2223455443 3333 24556789999999999999999977
No 437
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=94.24 E-value=0.3 Score=45.34 Aligned_cols=92 Identities=12% Similarity=0.160 Sum_probs=56.8
Q ss_pred CEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061 132 KKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA 210 (284)
Q Consensus 132 ~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa 210 (284)
++|.+||.|.+|.. +..|++ .|.+|+.+|.+++..+... ..|. +. ..+..++.......|+|++..
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~---~g~~v~v~dr~~~~~~~~~----~~g~-----~~-~~~~~e~~~~~~~~dvvi~~v 67 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLR---GGHEVVGYDRNPEAVEALA----EEGA-----TG-ADSLEELVAKLPAPRVVWLMV 67 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHH---CCCeEEEEECCHHHHHHHH----HCCC-----ee-cCCHHHHHhhcCCCCEEEEEe
Confidence 37999999987754 222333 6889999999998876653 3452 21 223333322222358888653
Q ss_pred cccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061 211 LVGMSKEEKVKIIKHIRKYMKDGGVLLVR 239 (284)
Q Consensus 211 ~v~~~~~~k~~il~~l~~~l~pGg~lv~r 239 (284)
.- .+.-..+++.+...+++|.+++--
T Consensus 68 ~~---~~~~~~v~~~l~~~l~~g~ivid~ 93 (301)
T PRK09599 68 PA---GEITDATIDELAPLLSPGDIVIDG 93 (301)
T ss_pred cC---CcHHHHHHHHHHhhCCCCCEEEeC
Confidence 31 124456778888889988766554
No 438
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=94.22 E-value=0.19 Score=46.74 Aligned_cols=89 Identities=11% Similarity=0.023 Sum_probs=55.8
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
-.+++|+.+|.|.+|......++ ..|++|+.+|.+++..+.+. ..|. +.. +..++...+.++|+|+.
T Consensus 149 l~gk~v~IiG~G~iG~avA~~L~--~~G~~V~v~~R~~~~~~~~~----~~g~-----~~~--~~~~l~~~l~~aDiVin 215 (287)
T TIGR02853 149 IHGSNVMVLGFGRTGMTIARTFS--ALGARVFVGARSSADLARIT----EMGL-----IPF--PLNKLEEKVAEIDIVIN 215 (287)
T ss_pred CCCCEEEEEcChHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHH----HCCC-----eee--cHHHHHHHhccCCEEEE
Confidence 46789999999988877665555 46899999999987654432 3442 111 11222333467999997
Q ss_pred cccccCChHHHHHHHHHHHhhcCCCcEEE
Q 036061 209 AALVGMSKEEKVKIIKHIRKYMKDGGVLL 237 (284)
Q Consensus 209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv 237 (284)
+.-.++ +-+...+.|++|++++
T Consensus 216 t~P~~i-------i~~~~l~~~k~~aliI 237 (287)
T TIGR02853 216 TIPALV-------LTADVLSKLPKHAVII 237 (287)
T ss_pred CCChHH-------hCHHHHhcCCCCeEEE
Confidence 643221 1133556788876554
No 439
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=94.22 E-value=0.33 Score=46.19 Aligned_cols=98 Identities=17% Similarity=0.164 Sum_probs=62.3
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEec--c----cccccc
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCD--I----MQVKEK 199 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D--~----~~~~~~ 199 (284)
...++.+||..|+|++|..++.+|+ ..|. +|+.+|.+++..+.+++ +| ...-+.....+ . .... .
T Consensus 187 ~~~~g~~VlV~G~g~vG~~~~~~a~--~~G~~~Vi~~~~~~~~~~~a~~----lG-a~~~i~~~~~~~~~~~~v~~~~-~ 258 (373)
T cd08299 187 KVTPGSTCAVFGLGGVGLSAIMGCK--AAGASRIIAVDINKDKFAKAKE----LG-ATECINPQDYKKPIQEVLTEMT-D 258 (373)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHH--HcCCCeEEEEcCCHHHHHHHHH----cC-CceEecccccchhHHHHHHHHh-C
Confidence 4577899999999999999999998 4677 89999999887766644 56 22112221111 1 1111 1
Q ss_pred CCCccEEEecccccCChHHHHHHHHH-HHhhcCCCcEEEEEe
Q 036061 200 LGEYDCIFLAALVGMSKEEKVKIIKH-IRKYMKDGGVLLVRS 240 (284)
Q Consensus 200 ~~~fD~V~~aa~v~~~~~~k~~il~~-l~~~l~pGg~lv~r~ 240 (284)
+.+|+|+-+..- ...+.. +...+++||+++.-.
T Consensus 259 -~~~d~vld~~g~-------~~~~~~~~~~~~~~~G~~v~~g 292 (373)
T cd08299 259 -GGVDFSFEVIGR-------LDTMKAALASCHEGYGVSVIVG 292 (373)
T ss_pred -CCCeEEEECCCC-------cHHHHHHHHhhccCCCEEEEEc
Confidence 369998754321 123444 444556888887764
No 440
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=94.20 E-value=0.55 Score=46.25 Aligned_cols=79 Identities=20% Similarity=0.310 Sum_probs=56.5
Q ss_pred CCEEEEeccCCChhHHHHHHh----hcCCCcEEEEEeCChHHHH----HHHHHHHhcCCCCCCeEEEEeccccccccCCC
Q 036061 131 PKKVAFVGSGPMPLTSIVMAK----NHLKSTHFDNFDIDEAAND----VARQIVSSDIEFEKRMKFVTCDIMQVKEKLGE 202 (284)
Q Consensus 131 ~~~VL~IGsG~lp~tai~LA~----~~~~g~~V~~iDid~~ai~----~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~ 202 (284)
.-+|.+||.|....+-+.+.- ..+++.++.-+|||+++.+ .+++++++.|. .+++.... +....+.+
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~---~~kv~~tt--d~~eAl~g 77 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGA---PVKVEATT--DRREALEG 77 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCC---CeEEEEec--CHHHHhcC
Confidence 458999999965443332221 1367899999999999999 89999999994 36665433 23345567
Q ss_pred ccEEEecccccC
Q 036061 203 YDCIFLAALVGM 214 (284)
Q Consensus 203 fD~V~~aa~v~~ 214 (284)
-|+|+....||.
T Consensus 78 AdfVi~~~rvG~ 89 (442)
T COG1486 78 ADFVITQIRVGG 89 (442)
T ss_pred CCEEEEEEeeCC
Confidence 899998887743
No 441
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=94.18 E-value=0.18 Score=43.99 Aligned_cols=75 Identities=25% Similarity=0.402 Sum_probs=46.2
Q ss_pred EEEEeccCCChhHHHHHHh----hcCCCcEEEEEeCChHHHHH----HHHHHHhcCCCCCCeEEE-EeccccccccCCCc
Q 036061 133 KVAFVGSGPMPLTSIVMAK----NHLKSTHFDNFDIDEAANDV----ARQIVSSDIEFEKRMKFV-TCDIMQVKEKLGEY 203 (284)
Q Consensus 133 ~VL~IGsG~lp~tai~LA~----~~~~g~~V~~iDid~~ai~~----Ar~~~~~~G~l~~~I~f~-~~D~~~~~~~~~~f 203 (284)
||.+||.|..-++-..+.. ..+++.+++-+|+|++.++. |++++++.|. ++++. +.|. ...+.+.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~---~~~v~~ttd~---~eAl~gA 74 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGA---DLKVEATTDR---REALEGA 74 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTT---SSEEEEESSH---HHHHTTE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCC---CeEEEEeCCH---HHHhCCC
Confidence 6889999965444333221 13567899999999988875 5555566662 55653 3343 3345578
Q ss_pred cEEEeccccc
Q 036061 204 DCIFLAALVG 213 (284)
Q Consensus 204 D~V~~aa~v~ 213 (284)
|+|+...-+|
T Consensus 75 DfVi~~irvG 84 (183)
T PF02056_consen 75 DFVINQIRVG 84 (183)
T ss_dssp SEEEE---TT
T ss_pred CEEEEEeeec
Confidence 9999877664
No 442
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=94.18 E-value=0.26 Score=46.78 Aligned_cols=106 Identities=19% Similarity=0.196 Sum_probs=67.0
Q ss_pred hcCCCCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc-cc--ccC
Q 036061 125 ENGVVNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ-VK--EKL 200 (284)
Q Consensus 125 ~~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~-~~--~~~ 200 (284)
.....++.+|+..|+|++|..++.+|+ ..|+ +|+++|.+++..+.+++ +|. .-+.+...+..+ +. ..
T Consensus 171 ~~~~~~g~~vlI~g~g~vg~~~~~~a~--~~G~~~vi~~~~~~~~~~~~~~----~g~--~~v~~~~~~~~~~i~~~~~- 241 (375)
T cd08282 171 LAGVQPGDTVAVFGAGPVGLMAAYSAI--LRGASRVYVVDHVPERLDLAES----IGA--IPIDFSDGDPVEQILGLEP- 241 (375)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHH--HcCCCEEEEECCCHHHHHHHHH----cCC--eEeccCcccHHHHHHHhhC-
Confidence 344578899999999999999999998 4676 79999999887766654 451 111111111111 11 11
Q ss_pred CCccEEEecccccC----ChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061 201 GEYDCIFLAALVGM----SKEEKVKIIKHIRKYMKDGGVLLVR 239 (284)
Q Consensus 201 ~~fD~V~~aa~v~~----~~~~k~~il~~l~~~l~pGg~lv~r 239 (284)
+.+|+|+-...-.. -...+...+....+.++++|.++.-
T Consensus 242 ~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 284 (375)
T cd08282 242 GGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIV 284 (375)
T ss_pred CCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEE
Confidence 35899985432100 0012344578889999999998654
No 443
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.18 E-value=0.059 Score=55.51 Aligned_cols=74 Identities=24% Similarity=0.363 Sum_probs=49.0
Q ss_pred CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChH-----------------HHHHHHHHHHhcCCCCCCeEEEEe-
Q 036061 130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEA-----------------ANDVARQIVSSDIEFEKRMKFVTC- 191 (284)
Q Consensus 130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~-----------------ai~~Ar~~~~~~G~l~~~I~f~~~- 191 (284)
.+++|+.||+||.|+++...+. ..|.+|+.+|.++. .++.-.+.++++| ++|..+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~--~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~G-----v~~~~~~ 398 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLA--RNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMG-----IEFELNC 398 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHH--HCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCC-----eEEECCC
Confidence 5689999999999999887766 47899999997643 4444455566666 344432
Q ss_pred ----ccccccccCCCccEEEeccc
Q 036061 192 ----DIMQVKEKLGEYDCIFLAAL 211 (284)
Q Consensus 192 ----D~~~~~~~~~~fD~V~~aa~ 211 (284)
|+. +......||.||++..
T Consensus 399 ~v~~~i~-~~~~~~~~DavilAtG 421 (654)
T PRK12769 399 EVGKDIS-LESLLEDYDAVFVGVG 421 (654)
T ss_pred EeCCcCC-HHHHHhcCCEEEEeCC
Confidence 211 1111246999998653
No 444
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.14 E-value=0.3 Score=44.95 Aligned_cols=93 Identities=19% Similarity=0.247 Sum_probs=55.6
Q ss_pred CEEEEeccCCChhHHHH-HHhh-cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061 132 KKVAFVGSGPMPLTSIV-MAKN-HLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA 209 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai~-LA~~-~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a 209 (284)
.+|.+||+|.+|.+-.. |.+. +....+|+++|++++..+.+.+ +.|. +. +.|..+. ..+.|+||++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~---~~g~-----~~-~~~~~e~---~~~aDiIiLa 70 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASD---KYGI-----TI-TTNNNEV---ANSADILILS 70 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHH---hcCc-----EE-eCCcHHH---HhhCCEEEEE
Confidence 58999999987754221 1110 0123479999999877554333 4452 22 2333222 2357999976
Q ss_pred ccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 210 ALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 210 a~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
.- +..-..+++.+...++++. +++.-.
T Consensus 71 vk----P~~~~~vl~~l~~~~~~~~-lvISi~ 97 (272)
T PRK12491 71 IK----PDLYSSVINQIKDQIKNDV-IVVTIA 97 (272)
T ss_pred eC----hHHHHHHHHHHHHhhcCCc-EEEEeC
Confidence 43 3667788888888887764 444443
No 445
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=94.14 E-value=0.22 Score=46.11 Aligned_cols=95 Identities=21% Similarity=0.208 Sum_probs=59.8
Q ss_pred CCCEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 130 NPKKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 130 ~~~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
++.+|+..| +|++|..++.+|+ ..|++|+++..+ + .++.++..| ...-+.....+..+.....+.+|+|+-
T Consensus 162 ~g~~vlI~g~~g~ig~~~~~~a~--~~G~~v~~~~~~-~----~~~~~~~~g-~~~~~~~~~~~~~~~l~~~~~vd~vi~ 233 (350)
T cd08248 162 AGKRVLILGGSGGVGTFAIQLLK--AWGAHVTTTCST-D----AIPLVKSLG-ADDVIDYNNEDFEEELTERGKFDVILD 233 (350)
T ss_pred CCCEEEEECCCChHHHHHHHHHH--HCCCeEEEEeCc-c----hHHHHHHhC-CceEEECCChhHHHHHHhcCCCCEEEE
Confidence 489999999 6999999999998 468898887744 3 234555566 221111111111111112346899984
Q ss_pred cccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
... . ..+....+.++++|+++.-.
T Consensus 234 ~~g-----~---~~~~~~~~~l~~~G~~v~~g 257 (350)
T cd08248 234 TVG-----G---DTEKWALKLLKKGGTYVTLV 257 (350)
T ss_pred CCC-----h---HHHHHHHHHhccCCEEEEec
Confidence 422 1 15678889999999998643
No 446
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=94.13 E-value=0.28 Score=51.15 Aligned_cols=90 Identities=14% Similarity=0.135 Sum_probs=59.2
Q ss_pred CEEEEeccCCChhHHHHHHhhcCCC--cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061 132 KKVAFVGSGPMPLTSIVMAKNHLKS--THFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA 209 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai~LA~~~~~g--~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a 209 (284)
++|.+||+|.+|.+.....+ ..| .+|+++|.+++..+.+++ .|. .. . ...|. .......|+||++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~--~~G~~~~V~~~d~~~~~~~~a~~----~g~-~~--~-~~~~~---~~~~~~aDvVila 70 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALR--ERGLAREVVAVDRRAKSLELAVS----LGV-ID--R-GEEDL---AEAVSGADVIVLA 70 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHH--hcCCCCEEEEEECChhHHHHHHH----CCC-CC--c-ccCCH---HHHhcCCCEEEEC
Confidence 68999999988876444333 234 579999999988776543 452 11 0 11122 2223568999987
Q ss_pred ccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061 210 ALVGMSKEEKVKIIKHIRKYMKDGGVLLV 238 (284)
Q Consensus 210 a~v~~~~~~k~~il~~l~~~l~pGg~lv~ 238 (284)
.-. .....+++.+.+.++++.+++.
T Consensus 71 vp~----~~~~~vl~~l~~~~~~~~ii~d 95 (735)
T PRK14806 71 VPV----LAMEKVLADLKPLLSEHAIVTD 95 (735)
T ss_pred CCH----HHHHHHHHHHHHhcCCCcEEEE
Confidence 543 5667888999998888765543
No 447
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.11 E-value=0.042 Score=54.42 Aligned_cols=105 Identities=20% Similarity=0.152 Sum_probs=85.2
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc----cCCCc
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKS-THFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE----KLGEY 203 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~----~~~~f 203 (284)
.++-+||+.=|++ |+-++..|+ +.+| .+|++-|.|+.+++.-+++++..+ .++.++-..+|+..+-. ....|
T Consensus 108 ~~~l~vLealsAt-GlrslRya~-El~~v~~v~AnD~~~~aV~~i~~Nv~~N~-v~~ive~~~~DA~~lM~~~~~~~~~F 184 (525)
T KOG1253|consen 108 EKSLRVLEALSAT-GLRSLRYAK-ELPGVRQVVANDLNENAVTSIQRNVELNG-VEDIVEPHHSDANVLMYEHPMVAKFF 184 (525)
T ss_pred cCcchHHHHhhhh-hHHHHHHHH-HhcchhhhcccCCCHHHHHHHHhhhhhcC-chhhcccccchHHHHHHhcccccccc
Confidence 4667888887765 799999998 4555 579999999999999999999998 79999999999864322 12469
Q ss_pred cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
|+|=++.+ .--..+|+...+.++.||+|.+...
T Consensus 185 DvIDLDPy-----Gs~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 185 DVIDLDPY-----GSPSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred ceEecCCC-----CCccHHHHHHHHHhhcCCEEEEEec
Confidence 99988876 3335789999999999999999663
No 448
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=94.01 E-value=1.2 Score=40.98 Aligned_cols=112 Identities=13% Similarity=0.156 Sum_probs=78.6
Q ss_pred CCCCCEEEEeccCCChhHHHHHHhhc--CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCc--
Q 036061 128 VVNPKKVAFVGSGPMPLTSIVMAKNH--LKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEY-- 203 (284)
Q Consensus 128 ~~~~~~VL~IGsG~lp~tai~LA~~~--~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~f-- 203 (284)
...+....++|||.---|.+.|-... ..-.+.+.||+|...++-.-+-+.+.- ..-.|.-++||....+..+...
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y-~~l~v~~l~~~~~~~La~~~~~~~ 154 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREY-PGLEVNALCGDYELALAELPRGGR 154 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhC-CCCeEeehhhhHHHHHhcccCCCe
Confidence 35689999999997666766654311 123689999999998876554444332 2457888899976433333222
Q ss_pred -cEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 204 -DCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 204 -D~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
=++|.-+.+ ..++++...++.++...|+||-.+++-.
T Consensus 155 Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 155 RLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 245566666 4588999999999999999999998844
No 449
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=93.93 E-value=0.28 Score=45.15 Aligned_cols=88 Identities=19% Similarity=0.134 Sum_probs=54.7
Q ss_pred CEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061 132 KKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA 210 (284)
Q Consensus 132 ~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa 210 (284)
++|.+||+|.+|.. +..+++ .|.+|+++|.+++..+.+.+ .|. .+ +.+..+. ..+.|+||++.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~---~g~~v~~~d~~~~~~~~~~~----~g~-----~~-~~~~~e~---~~~~d~vi~~v 66 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLK---AGYSLVVYDRNPEAVAEVIA----AGA-----ET-ASTAKAV---AEQCDVIITML 66 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHH---CCCeEEEEcCCHHHHHHHHH----CCC-----ee-cCCHHHH---HhcCCEEEEeC
Confidence 47999999988764 344544 78899999999987665432 341 21 2232222 24689999764
Q ss_pred cccCChHHHHHHH---HHHHhhcCCCcEEEE
Q 036061 211 LVGMSKEEKVKII---KHIRKYMKDGGVLLV 238 (284)
Q Consensus 211 ~v~~~~~~k~~il---~~l~~~l~pGg~lv~ 238 (284)
.. ...-..++ +.+...+++|.+++-
T Consensus 67 p~---~~~~~~v~~~~~~~~~~~~~g~iiid 94 (296)
T PRK11559 67 PN---SPHVKEVALGENGIIEGAKPGTVVID 94 (296)
T ss_pred CC---HHHHHHHHcCcchHhhcCCCCcEEEE
Confidence 32 12223343 456778888877763
No 450
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=93.91 E-value=0.32 Score=45.28 Aligned_cols=95 Identities=19% Similarity=0.204 Sum_probs=63.5
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc----ccccC-CC
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKST-HFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ----VKEKL-GE 202 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~----~~~~~-~~ 202 (284)
.++.+|+..|+|++|..++.+|+ ..|+ +|+.++.+++..+.+++ .| . + .++..+-.+ +.... +.
T Consensus 174 ~~~~~vlI~g~g~vg~~~~~~a~--~~G~~~v~~~~~~~~~~~~~~~----~g-~-~--~~~~~~~~~~~~~~~~~~~~~ 243 (350)
T cd08240 174 VADEPVVIIGAGGLGLMALALLK--ALGPANIIVVDIDEAKLEAAKA----AG-A-D--VVVNGSDPDAAKRIIKAAGGG 243 (350)
T ss_pred CCCCEEEEECCcHHHHHHHHHHH--HcCCCeEEEEeCCHHHHHHHHH----hC-C-c--EEecCCCccHHHHHHHHhCCC
Confidence 46789999999999999999999 4677 79999999887766643 46 2 1 222111101 11111 25
Q ss_pred ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+|+|+-.... ...+....+.|+++|+++.-.
T Consensus 244 ~d~vid~~g~-------~~~~~~~~~~l~~~g~~v~~g 274 (350)
T cd08240 244 VDAVIDFVNN-------SATASLAFDILAKGGKLVLVG 274 (350)
T ss_pred CcEEEECCCC-------HHHHHHHHHHhhcCCeEEEEC
Confidence 8999843221 235788899999999998643
No 451
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=93.89 E-value=0.84 Score=40.30 Aligned_cols=101 Identities=18% Similarity=0.157 Sum_probs=57.4
Q ss_pred CEEEEec-cCCChhHHHH-HHhhcCCCcEEEEEeCChHHHHHHHH-HHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 132 KKVAFVG-SGPMPLTSIV-MAKNHLKSTHFDNFDIDEAANDVARQ-IVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 132 ~~VL~IG-sG~lp~tai~-LA~~~~~g~~V~~iDid~~ai~~Ar~-~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
++|.+|| +|.+|.+... |++ .|.+|+.++.+++..+...+ .....+...-.++....+.. ......|+||+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~---~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~---ea~~~aDvVil 74 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAK---AGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNA---EAAKRADVVIL 74 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHh---CCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChH---HHHhcCCEEEE
Confidence 4799997 8987754322 333 67899999999887655433 22222210011222222322 22346899998
Q ss_pred cccccCChHHHHHHHHHHHhhcCCCcEEEEEecCcc
Q 036061 209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGA 244 (284)
Q Consensus 209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~gl 244 (284)
+.-- ..-..+++.+...++ + .+++...+|+
T Consensus 75 avp~----~~~~~~l~~l~~~l~-~-~vvI~~~ngi 104 (219)
T TIGR01915 75 AVPW----DHVLKTLESLRDELS-G-KLVISPVVPL 104 (219)
T ss_pred ECCH----HHHHHHHHHHHHhcc-C-CEEEEeccCc
Confidence 7542 445566777766664 3 5666665554
No 452
>PLN02928 oxidoreductase family protein
Probab=93.87 E-value=0.1 Score=49.80 Aligned_cols=104 Identities=14% Similarity=0.102 Sum_probs=58.0
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
-.+++|..||.|.+|......++ ..|++|+++|.+...-........... . .......+...++..-+.+.|+|++
T Consensus 157 l~gktvGIiG~G~IG~~vA~~l~--afG~~V~~~dr~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~L~ell~~aDiVvl 232 (347)
T PLN02928 157 LFGKTVFILGYGAIGIELAKRLR--PFGVKLLATRRSWTSEPEDGLLIPNGD-V-DDLVDEKGGHEDIYEFAGEADIVVL 232 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHh--hCCCEEEEECCCCChhhhhhhcccccc-c-cccccccCcccCHHHHHhhCCEEEE
Confidence 46789999999998876555555 579999999987432111000000000 0 0000000112223334467899987
Q ss_pred cccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061 209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLV 238 (284)
Q Consensus 209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~ 238 (284)
+.-. +++.+.=+=++....||||++||=
T Consensus 233 ~lPl--t~~T~~li~~~~l~~Mk~ga~lIN 260 (347)
T PLN02928 233 CCTL--TKETAGIVNDEFLSSMKKGALLVN 260 (347)
T ss_pred CCCC--ChHhhcccCHHHHhcCCCCeEEEE
Confidence 6533 334444344677889999987654
No 453
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=93.83 E-value=0.4 Score=43.63 Aligned_cols=99 Identities=13% Similarity=0.069 Sum_probs=64.4
Q ss_pred CCCCCCEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc-cc--ccCCC
Q 036061 127 GVVNPKKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ-VK--EKLGE 202 (284)
Q Consensus 127 ~~~~~~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~-~~--~~~~~ 202 (284)
...++.+|+..| +|++|..++.+|+ ..|.+|++++.+++..+.++ ..| ...-+.....+..+ +. .....
T Consensus 139 ~~~~~~~vlI~g~~~~~g~~~~~la~--~~g~~v~~~~~~~~~~~~~~----~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 211 (324)
T cd08244 139 TLTPGDVVLVTAAAGGLGSLLVQLAK--AAGATVVGAAGGPAKTALVR----ALG-ADVAVDYTRPDWPDQVREALGGGG 211 (324)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHH----HcC-CCEEEecCCccHHHHHHHHcCCCC
Confidence 457788999999 6889999999999 46899999999988766654 355 21111111111111 11 11135
Q ss_pred ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+|+|+-+.. . ...+...+.++++|.++.-.
T Consensus 212 ~d~vl~~~g------~--~~~~~~~~~l~~~g~~v~~g 241 (324)
T cd08244 212 VTVVLDGVG------G--AIGRAALALLAPGGRFLTYG 241 (324)
T ss_pred ceEEEECCC------h--HhHHHHHHHhccCcEEEEEe
Confidence 999984422 1 13477888999999988654
No 454
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=93.83 E-value=0.45 Score=35.96 Aligned_cols=87 Identities=13% Similarity=0.122 Sum_probs=54.5
Q ss_pred EEEEeccCCChhHHHHHHhhcCCC---cEEE-EEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 133 KVAFVGSGPMPLTSIVMAKNHLKS---THFD-NFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 133 ~VL~IGsG~lp~tai~LA~~~~~g---~~V~-~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
||.+||+|.+|..- .......| .+|+ ..+.+++..+...+ +.| +.+...|..+... ..|+||+
T Consensus 1 kI~iIG~G~mg~al--~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~---~~~-----~~~~~~~~~~~~~---~advvil 67 (96)
T PF03807_consen 1 KIGIIGAGNMGSAL--ARGLLASGIKPHEVIIVSSRSPEKAAELAK---EYG-----VQATADDNEEAAQ---EADVVIL 67 (96)
T ss_dssp EEEEESTSHHHHHH--HHHHHHTTS-GGEEEEEEESSHHHHHHHHH---HCT-----TEEESEEHHHHHH---HTSEEEE
T ss_pred CEEEECCCHHHHHH--HHHHHHCCCCceeEEeeccCcHHHHHHHHH---hhc-----cccccCChHHhhc---cCCEEEE
Confidence 68999999766432 22212355 7888 44999988665554 554 3444434443332 5799998
Q ss_pred cccccCChHHHHHHHHHHHhhcCCCcEEE
Q 036061 209 AALVGMSKEEKVKIIKHIRKYMKDGGVLL 237 (284)
Q Consensus 209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv 237 (284)
+.- +..-.++++++ ....+|..++
T Consensus 68 av~----p~~~~~v~~~i-~~~~~~~~vi 91 (96)
T PF03807_consen 68 AVK----PQQLPEVLSEI-PHLLKGKLVI 91 (96)
T ss_dssp -S-----GGGHHHHHHHH-HHHHTTSEEE
T ss_pred EEC----HHHHHHHHHHH-hhccCCCEEE
Confidence 643 36667888888 7777777665
No 455
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=93.83 E-value=2.1 Score=40.57 Aligned_cols=104 Identities=16% Similarity=0.183 Sum_probs=63.2
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHH-------------------------------
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVS------------------------------- 177 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~------------------------------- 177 (284)
..+-+||.=|||. |--|.-||. .|..+-|=+.|--|+=.+.=.+.
T Consensus 149 r~ki~iLvPGaGl-GRLa~dla~---~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~ 224 (369)
T KOG2798|consen 149 RTKIRILVPGAGL-GRLAYDLAC---LGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPIS 224 (369)
T ss_pred ccCceEEecCCCc-hhHHHHHHH---hcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecccccccccccccccc
Confidence 4567999999995 555677776 44444444555555443333331
Q ss_pred --------hcCCCCCCeEEEEeccccccccC---CCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061 178 --------SDIEFEKRMKFVTCDIMQVKEKL---GEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLV 238 (284)
Q Consensus 178 --------~~G~l~~~I~f~~~D~~~~~~~~---~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~ 238 (284)
..+ -......-.||-.++-..- +.||+|+.+-++ -+..+-.+.++.|.+.|+|||+.+=
T Consensus 225 ~PD~~p~~~~~-~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFI-DTa~NileYi~tI~~iLk~GGvWiN 294 (369)
T KOG2798|consen 225 IPDIHPASSNG-NTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFI-DTAHNILEYIDTIYKILKPGGVWIN 294 (369)
T ss_pred CccccccccCC-CCCCccccccceeEEecCcCCCCccceEEEEEEe-echHHHHHHHHHHHHhccCCcEEEe
Confidence 111 0122222335655543332 259999887665 2347788999999999999998654
No 456
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=93.83 E-value=0.59 Score=42.19 Aligned_cols=99 Identities=19% Similarity=0.232 Sum_probs=57.6
Q ss_pred CCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEE
Q 036061 128 VVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCI 206 (284)
Q Consensus 128 ~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V 206 (284)
..++.+|+..|+ |++|..++.+|+ ..|++|++++-+ +.. +.++.+| ...-+.....+........+.+|+|
T Consensus 141 ~~~g~~vli~g~~g~~g~~~~~la~--~~g~~v~~~~~~-~~~----~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~d~v 212 (319)
T cd08267 141 VKPGQRVLINGASGGVGTFAVQIAK--ALGAHVTGVCST-RNA----ELVRSLG-ADEVIDYTTEDFVALTAGGEKYDVI 212 (319)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHH--HcCCEEEEEeCH-HHH----HHHHHcC-CCEeecCCCCCcchhccCCCCCcEE
Confidence 567899999997 889999999998 578899999854 433 3444566 3211111111110001122458999
Q ss_pred EecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 207 FLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 207 ~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+.+.. ......... ...++++|.++.-.
T Consensus 213 i~~~~-----~~~~~~~~~-~~~l~~~g~~i~~g 240 (319)
T cd08267 213 FDAVG-----NSPFSLYRA-SLALKPGGRYVSVG 240 (319)
T ss_pred EECCC-----chHHHHHHh-hhccCCCCEEEEec
Confidence 85432 111222222 22489999988643
No 457
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.83 E-value=0.093 Score=53.97 Aligned_cols=75 Identities=23% Similarity=0.313 Sum_probs=49.2
Q ss_pred CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCCh-----------------HHHHHHHHHHHhcCCCCCCeEEEEec
Q 036061 130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDE-----------------AANDVARQIVSSDIEFEKRMKFVTCD 192 (284)
Q Consensus 130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~-----------------~ai~~Ar~~~~~~G~l~~~I~f~~~D 192 (284)
.+++|+.||+||.|+++...+. ..|.+|+.+|..+ +.++.-.+.+...| ++|..+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~--~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~G-----v~~~~~~ 381 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILA--RAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMG-----IDFHLNC 381 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHH--HcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCC-----eEEEcCC
Confidence 4799999999999999887766 3688999999765 33444455666666 3443322
Q ss_pred c--cc--ccccCCCccEEEeccc
Q 036061 193 I--MQ--VKEKLGEYDCIFLAAL 211 (284)
Q Consensus 193 ~--~~--~~~~~~~fD~V~~aa~ 211 (284)
. .+ +......||.||++..
T Consensus 382 ~v~~~~~~~~l~~~~DaV~latG 404 (639)
T PRK12809 382 EIGRDITFSDLTSEYDAVFIGVG 404 (639)
T ss_pred ccCCcCCHHHHHhcCCEEEEeCC
Confidence 1 11 1111246999998754
No 458
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=93.79 E-value=0.26 Score=49.42 Aligned_cols=108 Identities=17% Similarity=0.272 Sum_probs=79.6
Q ss_pred CCEEEEeccCCChh--HHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 131 PKKVAFVGSGPMPL--TSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 131 ~~~VL~IGsG~lp~--tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
...|+.+|+|-+|+ .++..|+......++.+|+-+|.|+-.-+. ....+ .+++|+++.+|.+++..+..+.|+++.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~-W~~~Vtii~~DMR~w~ap~eq~DI~VS 445 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFEC-WDNRVTIISSDMRKWNAPREQADIIVS 445 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhh-hcCeeEEEeccccccCCchhhccchHH
Confidence 56788899985554 444445433456789999999999877666 44455 678999999999998865457898763
Q ss_pred ccccc--CChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 209 AALVG--MSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 209 aa~v~--~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
. +.| .+-|---+.|..+-+.|||+|+.|=+++
T Consensus 446 E-LLGSFGDNELSPECLDG~q~fLkpdgIsIP~sY 479 (649)
T KOG0822|consen 446 E-LLGSFGDNELSPECLDGAQKFLKPDGISIPSSY 479 (649)
T ss_pred H-hhccccCccCCHHHHHHHHhhcCCCceEccchh
Confidence 3 332 1335556799999999999998877664
No 459
>PRK13243 glyoxylate reductase; Reviewed
Probab=93.78 E-value=0.15 Score=48.41 Aligned_cols=91 Identities=19% Similarity=0.130 Sum_probs=59.0
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
-.+++|..||.|.+|-.....++ ..|++|.++|.++.... ....| +.+ .+..+ -+.+.|+|++
T Consensus 148 L~gktvgIiG~G~IG~~vA~~l~--~~G~~V~~~d~~~~~~~-----~~~~~-----~~~--~~l~e---ll~~aDiV~l 210 (333)
T PRK13243 148 VYGKTIGIIGFGRIGQAVARRAK--GFGMRILYYSRTRKPEA-----EKELG-----AEY--RPLEE---LLRESDFVSL 210 (333)
T ss_pred CCCCEEEEECcCHHHHHHHHHHH--HCCCEEEEECCCCChhh-----HHHcC-----CEe--cCHHH---HHhhCCEEEE
Confidence 36899999999998876444444 47899999999875421 12233 122 23332 2356899987
Q ss_pred cccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061 209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLV 238 (284)
Q Consensus 209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~ 238 (284)
+.-. +.+-+.-+-++....||||++|+-
T Consensus 211 ~lP~--t~~T~~~i~~~~~~~mk~ga~lIN 238 (333)
T PRK13243 211 HVPL--TKETYHMINEERLKLMKPTAILVN 238 (333)
T ss_pred eCCC--ChHHhhccCHHHHhcCCCCeEEEE
Confidence 6543 333344344678889999988765
No 460
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=93.75 E-value=0.39 Score=44.56 Aligned_cols=91 Identities=18% Similarity=0.227 Sum_probs=56.0
Q ss_pred EEEEeccCCChhHH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEeccc
Q 036061 133 KVAFVGSGPMPLTS-IVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAAL 211 (284)
Q Consensus 133 ~VL~IGsG~lp~ta-i~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~ 211 (284)
+|.+||.|.+|..- ..|++ .|.+|+.+|.+++..+.++ ..|. +. ..+..++.......|+|+++..
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~---~g~~v~v~dr~~~~~~~~~----~~g~-----~~-~~s~~~~~~~~~~advVi~~vp 68 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRE---DGHEVVGYDVNQEAVDVAG----KLGI-----TA-RHSLEELVSKLEAPRTIWVMVP 68 (299)
T ss_pred EEEEEcccHHHHHHHHHHHh---CCCEEEEEECCHHHHHHHH----HCCC-----ee-cCCHHHHHHhCCCCCEEEEEec
Confidence 79999999877642 22333 6789999999998766543 3442 11 2233332222223688886533
Q ss_pred ccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061 212 VGMSKEEKVKIIKHIRKYMKDGGVLLVR 239 (284)
Q Consensus 212 v~~~~~~k~~il~~l~~~l~pGg~lv~r 239 (284)
- .+.-..+++.+...+++|.+++--
T Consensus 69 ~---~~~~~~v~~~i~~~l~~g~ivid~ 93 (299)
T PRK12490 69 A---GEVTESVIKDLYPLLSPGDIVVDG 93 (299)
T ss_pred C---chHHHHHHHHHhccCCCCCEEEEC
Confidence 1 234466778888888888776654
No 461
>PLN02712 arogenate dehydrogenase
Probab=93.73 E-value=0.34 Score=50.25 Aligned_cols=90 Identities=14% Similarity=0.110 Sum_probs=55.8
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
..+.+|..||+|.+|.+-....+ ..|.+|+++|.++.. +. +...|. .+ ..|..++.. ...|+|++
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~--~~G~~V~~~dr~~~~-~~----A~~~Gv-----~~-~~d~~e~~~--~~aDvViL 114 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLI--SQGHTVLAHSRSDHS-LA----ARSLGV-----SF-FLDPHDLCE--RHPDVILL 114 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHH--HCCCEEEEEeCCHHH-HH----HHHcCC-----EE-eCCHHHHhh--cCCCEEEE
Confidence 45679999999987764322212 257899999998543 22 334552 22 233332211 34799998
Q ss_pred cccccCChHHHHHHHHHHH-hhcCCCcEEE
Q 036061 209 AALVGMSKEEKVKIIKHIR-KYMKDGGVLL 237 (284)
Q Consensus 209 aa~v~~~~~~k~~il~~l~-~~l~pGg~lv 237 (284)
+.-+ ..-.++++.+. ..++||.+++
T Consensus 115 avP~----~~~~~vl~~l~~~~l~~g~iVv 140 (667)
T PLN02712 115 CTSI----ISTENVLKSLPLQRLKRNTLFV 140 (667)
T ss_pred cCCH----HHHHHHHHhhhhhcCCCCeEEE
Confidence 7554 55677888876 5788887443
No 462
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=93.71 E-value=0.73 Score=43.89 Aligned_cols=46 Identities=17% Similarity=0.159 Sum_probs=39.5
Q ss_pred CCCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHH
Q 036061 127 GVVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQ 174 (284)
Q Consensus 127 ~~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~ 174 (284)
...++.+|+..|+ |++|..++.+|+ ..|+++++++.+++..+.+++
T Consensus 190 ~~~~g~~vlV~ga~g~iG~a~~~lak--~~G~~vv~~~~s~~~~~~~~~ 236 (393)
T cd08246 190 TVKPGDNVLIWGASGGLGSMAIQLAR--AAGANPVAVVSSEEKAEYCRA 236 (393)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHH--HcCCeEEEEeCCHHHHHHHHH
Confidence 4567899999997 999999999999 478999999999988877765
No 463
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=93.68 E-value=0.29 Score=44.57 Aligned_cols=104 Identities=21% Similarity=0.238 Sum_probs=61.2
Q ss_pred EEEecc-CCChhHHHHHHhhcC--CCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecc
Q 036061 134 VAFVGS-GPMPLTSIVMAKNHL--KSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAA 210 (284)
Q Consensus 134 VL~IGs-G~lp~tai~LA~~~~--~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa 210 (284)
|..||+ |.+|.+......... ...+++-+|++++.++.....+++.-......++...+ +....+.+.|+|++.+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~--d~~~~~~~aDiVv~t~ 78 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITD--DPYEAFKDADVVIITA 78 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECC--chHHHhCCCCEEEECC
Confidence 467999 776655444322112 23789999999977776666665442111123443222 1223456789999866
Q ss_pred cc----cCCh--------HHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 211 LV----GMSK--------EEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 211 ~v----~~~~--------~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.+ |++. +-+.++.+.+.+. .|.|++++-+
T Consensus 79 ~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~~i~~t 119 (263)
T cd00650 79 GVGRKPGMGRLDLLKRNVPIVKEIGDNIEKY-SPDAWIIVVS 119 (263)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence 43 2221 3367777777776 4888877755
No 464
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.68 E-value=0.4 Score=41.97 Aligned_cols=76 Identities=12% Similarity=0.150 Sum_probs=52.5
Q ss_pred CCCEEEEecc-CCChhHHHH-HHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc----------
Q 036061 130 NPKKVAFVGS-GPMPLTSIV-MAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK---------- 197 (284)
Q Consensus 130 ~~~~VL~IGs-G~lp~tai~-LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~---------- 197 (284)
+++++|.+|+ |.+|..... +++ .|++|+.+|.++...+.+.+.++..| .++.++..|+.+..
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~---~G~~vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~ 77 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQ---KGAKLALIDLNQEKLEEAVAECGALG---TEVRGYAANVTDEEDVEATFAQIA 77 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEEcCCCCHHHHHHHHHHHH
Confidence 4679999997 555544332 333 68999999999987777766666555 47888999986521
Q ss_pred ccCCCccEEEeccc
Q 036061 198 EKLGEYDCIFLAAL 211 (284)
Q Consensus 198 ~~~~~fD~V~~aa~ 211 (284)
...+..|+||.++.
T Consensus 78 ~~~~~id~vi~~ag 91 (253)
T PRK08217 78 EDFGQLNGLINNAG 91 (253)
T ss_pred HHcCCCCEEEECCC
Confidence 11246899987664
No 465
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.61 E-value=0.41 Score=46.56 Aligned_cols=100 Identities=16% Similarity=0.198 Sum_probs=64.6
Q ss_pred CCCEEEEeccCCChh-HHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc-------------
Q 036061 130 NPKKVAFVGSGPMPL-TSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ------------- 195 (284)
Q Consensus 130 ~~~~VL~IGsG~lp~-tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~------------- 195 (284)
...+|..||=|=+|+ +|..+|+ .|.+|+|+||++..++.-.+ | +..+..-+..+
T Consensus 8 ~~~~I~ViGLGYVGLPlA~~fA~---~G~~ViG~DIn~~~Vd~ln~-----G----~~~i~e~~~~~~v~~~v~~g~lra 75 (436)
T COG0677 8 MSATIGVIGLGYVGLPLAAAFAS---AGFKVIGVDINQKKVDKLNR-----G----ESYIEEPDLDEVVKEAVESGKLRA 75 (436)
T ss_pred CceEEEEEccccccHHHHHHHHH---cCCceEeEeCCHHHHHHHhC-----C----cceeecCcHHHHHHHHHhcCCceE
Confidence 348999999994444 3555676 89999999999998876433 1 11111111110
Q ss_pred --ccccCCCccEEEecccccC------ChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 196 --VKEKLGEYDCIFLAALVGM------SKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 196 --~~~~~~~fD~V~~aa~v~~------~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
-+..++..|+++++.-... +..--....+.+++.|++|-++++.|.
T Consensus 76 Ttd~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST 129 (436)
T COG0677 76 TTDPEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILEST 129 (436)
T ss_pred ecChhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 1123447888877653222 112236778899999999999999984
No 466
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=93.60 E-value=0.44 Score=42.58 Aligned_cols=96 Identities=13% Similarity=0.043 Sum_probs=63.8
Q ss_pred CCCCCCEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccc----c--cc
Q 036061 127 GVVNPKKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQV----K--EK 199 (284)
Q Consensus 127 ~~~~~~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~----~--~~ 199 (284)
...++.+||..| +|++|..++.+|+ ..|++|++++.+++..+.++ ..| . +. ++..+-.+. . ..
T Consensus 133 ~~~~g~~vlI~g~~g~~g~~~~~~a~--~~g~~v~~~~~~~~~~~~~~----~~g-~-~~--~~~~~~~~~~~~~~~~~~ 202 (320)
T cd05286 133 PVKPGDTVLVHAAAGGVGLLLTQWAK--ALGATVIGTVSSEEKAELAR----AAG-A-DH--VINYRDEDFVERVREITG 202 (320)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHH--HcCCEEEEEcCCHHHHHHHH----HCC-C-CE--EEeCCchhHHHHHHHHcC
Confidence 456789999999 6889999999998 46899999999988766654 356 2 11 211111111 1 11
Q ss_pred CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 200 LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 200 ~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
...+|+|+-+.. . ..+....+.|+++|.++.-.
T Consensus 203 ~~~~d~vl~~~~-----~---~~~~~~~~~l~~~g~~v~~g 235 (320)
T cd05286 203 GRGVDVVYDGVG-----K---DTFEGSLDSLRPRGTLVSFG 235 (320)
T ss_pred CCCeeEEEECCC-----c---HhHHHHHHhhccCcEEEEEe
Confidence 235999984322 1 24567788999999988643
No 467
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=93.58 E-value=0.19 Score=42.20 Aligned_cols=101 Identities=18% Similarity=0.291 Sum_probs=61.1
Q ss_pred EEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHH---hcCC--CCCCeEEEEeccccccccCCCccEEE
Q 036061 133 KVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVS---SDIE--FEKRMKFVTCDIMQVKEKLGEYDCIF 207 (284)
Q Consensus 133 ~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~---~~G~--l~~~I~f~~~D~~~~~~~~~~fD~V~ 207 (284)
+|..+|+|.+|.+...... ..|.+|+-...+++.++.=++.-. .++. +..++.+ +.|..+ .....|+|+
T Consensus 1 KI~ViGaG~~G~AlA~~la--~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~---a~~~ad~Ii 74 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLA--DNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEE---ALEDADIII 74 (157)
T ss_dssp EEEEESSSHHHHHHHHHHH--HCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHH---HHTT-SEEE
T ss_pred CEEEECcCHHHHHHHHHHH--HcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHH---HhCcccEEE
Confidence 6889999987765444333 377899999999976654444211 0110 1234544 455433 234679998
Q ss_pred ecccccCChHHHHHHHHHHHhhcCCCcEEEEEecCcc
Q 036061 208 LAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSAKGA 244 (284)
Q Consensus 208 ~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~~gl 244 (284)
++.-. ..-..+++++.+++++|..++.- .+|+
T Consensus 75 iavPs----~~~~~~~~~l~~~l~~~~~ii~~-~KG~ 106 (157)
T PF01210_consen 75 IAVPS----QAHREVLEQLAPYLKKGQIIISA-TKGF 106 (157)
T ss_dssp E-S-G----GGHHHHHHHHTTTSHTT-EEEET-S-SE
T ss_pred ecccH----HHHHHHHHHHhhccCCCCEEEEe-cCCc
Confidence 76432 34468999999999888777654 3565
No 468
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=93.58 E-value=0.93 Score=43.65 Aligned_cols=76 Identities=13% Similarity=0.213 Sum_probs=50.1
Q ss_pred CCCEEEEec-cCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 130 NPKKVAFVG-SGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 130 ~~~~VL~IG-sG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
..++|..|| .|.+|-+-....+ ..|..|+++|.++.. +..+ ...+.|+||+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~--~~G~~V~~~d~~~~~-----------------------~~~~---~~~~aDlVil 148 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLT--LSGYQVRILEQDDWD-----------------------RAED---ILADAGMVIV 148 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHH--HCCCeEEEeCCCcch-----------------------hHHH---HHhcCCEEEE
Confidence 447999999 8987766322222 367899999987420 1111 1235799998
Q ss_pred cccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061 209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLV 238 (284)
Q Consensus 209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~ 238 (284)
+..+ ....++++.+.. ++||.+++=
T Consensus 149 avP~----~~~~~~~~~l~~-l~~~~iv~D 173 (374)
T PRK11199 149 SVPI----HLTEEVIARLPP-LPEDCILVD 173 (374)
T ss_pred eCcH----HHHHHHHHHHhC-CCCCcEEEE
Confidence 8765 556788888888 777665543
No 469
>PLN02712 arogenate dehydrogenase
Probab=93.56 E-value=2 Score=44.68 Aligned_cols=89 Identities=17% Similarity=0.183 Sum_probs=55.3
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhc-CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNH-LKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~-~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~ 207 (284)
..+++|.+||.|.+|.+ +|++. ..|.+|+++|.++.. +. +.+.|. .+ ..|..++.. ...|+||
T Consensus 367 ~~~~kIgIIGlG~mG~s---lA~~L~~~G~~V~~~dr~~~~-~~----a~~~Gv-----~~-~~~~~el~~--~~aDvVI 430 (667)
T PLN02712 367 GSKLKIAIVGFGNFGQF---LAKTMVKQGHTVLAYSRSDYS-DE----AQKLGV-----SY-FSDADDLCE--EHPEVIL 430 (667)
T ss_pred CCCCEEEEEecCHHHHH---HHHHHHHCcCEEEEEECChHH-HH----HHHcCC-----eE-eCCHHHHHh--cCCCEEE
Confidence 46689999999987764 33321 257899999999643 22 334562 22 234333221 2479999
Q ss_pred ecccccCChHHHHHHHHHHHh-hcCCCcEEE
Q 036061 208 LAALVGMSKEEKVKIIKHIRK-YMKDGGVLL 237 (284)
Q Consensus 208 ~aa~v~~~~~~k~~il~~l~~-~l~pGg~lv 237 (284)
++.-+ ..-..+++++.. .++||.+++
T Consensus 431 LavP~----~~~~~vi~~l~~~~lk~g~ivv 457 (667)
T PLN02712 431 LCTSI----LSTEKVLKSLPFQRLKRSTLFV 457 (667)
T ss_pred ECCCh----HHHHHHHHHHHHhcCCCCcEEE
Confidence 87554 455667777765 678877654
No 470
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.55 E-value=0.47 Score=41.66 Aligned_cols=93 Identities=12% Similarity=0.066 Sum_probs=50.4
Q ss_pred CCCEEEEeccCCChh-HHHHHHhhcCCCc-EEEEEeCC-------------------hHHHHHHHHHHHhcCCCCCCeEE
Q 036061 130 NPKKVAFVGSGPMPL-TSIVMAKNHLKST-HFDNFDID-------------------EAANDVARQIVSSDIEFEKRMKF 188 (284)
Q Consensus 130 ~~~~VL~IGsG~lp~-tai~LA~~~~~g~-~V~~iDid-------------------~~ai~~Ar~~~~~~G~l~~~I~f 188 (284)
...+|+.||+|.+|- .+..|++ .|. +++.+|.| ..-.+.+.+.+++.. ..-+++.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~---~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~v~i~~ 95 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAG---AGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN-SDIQVTA 95 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH---cCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC-CCCEEEE
Confidence 568999999995544 3334444 564 89999988 122333444444443 1234444
Q ss_pred EEecccc--ccccCCCccEEEecccccCChHHHHHHHHHHHhh
Q 036061 189 VTCDIMQ--VKEKLGEYDCIFLAALVGMSKEEKVKIIKHIRKY 229 (284)
Q Consensus 189 ~~~D~~~--~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~ 229 (284)
+...+.+ +...+.+||+|+.+..- .+.+..+-+.+++.
T Consensus 96 ~~~~i~~~~~~~~~~~~D~Vi~~~d~---~~~r~~l~~~~~~~ 135 (202)
T TIGR02356 96 LKERVTAENLELLINNVDLVLDCTDN---FATRYLINDACVAL 135 (202)
T ss_pred ehhcCCHHHHHHHHhCCCEEEECCCC---HHHHHHHHHHHHHc
Confidence 4444322 22235689999866431 24444444444443
No 471
>PLN02602 lactate dehydrogenase
Probab=93.50 E-value=1.2 Score=42.61 Aligned_cols=103 Identities=20% Similarity=0.214 Sum_probs=65.6
Q ss_pred CEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChH-HHHHHHHHHHhcCCCCCCeEEEE-eccccccccCCCccEEEec
Q 036061 132 KKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEA-ANDVARQIVSSDIEFEKRMKFVT-CDIMQVKEKLGEYDCIFLA 209 (284)
Q Consensus 132 ~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~-ai~~Ar~~~~~~G~l~~~I~f~~-~D~~~~~~~~~~fD~V~~a 209 (284)
.+|..||+|..|.+..+..........+.-+|++++ +-..|..+...... ...+++.. +|. .++++.|+|++.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~-~~~~~i~~~~dy----~~~~daDiVVit 112 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAF-LPRTKILASTDY----AVTAGSDLCIVT 112 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhc-CCCCEEEeCCCH----HHhCCCCEEEEC
Confidence 699999999888877665442233457999999885 44667776666552 23355543 342 235678999988
Q ss_pred ccc----cCChHHH--------HHHHHHHHhhcCCCcEEEEEe
Q 036061 210 ALV----GMSKEEK--------VKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 210 a~v----~~~~~~k--------~~il~~l~~~l~pGg~lv~r~ 240 (284)
+.+ +|+..+- .++.+.+.++ .|.|++++-+
T Consensus 113 AG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~ivivvt 154 (350)
T PLN02602 113 AGARQIPGESRLNLLQRNVALFRKIIPELAKY-SPDTILLIVS 154 (350)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence 765 3443221 3444555554 6788777755
No 472
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.49 E-value=0.1 Score=42.81 Aligned_cols=95 Identities=8% Similarity=0.130 Sum_probs=52.8
Q ss_pred EEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC----CCCCeEEEEeccc-cccccCCCccEEEe
Q 036061 134 VAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIE----FEKRMKFVTCDIM-QVKEKLGEYDCIFL 208 (284)
Q Consensus 134 VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~----l~~~I~f~~~D~~-~~~~~~~~fD~V~~ 208 (284)
|+.+|+|.+|..-. +.....|.+|+.++..+ .++. +++.|. ...+..+...... +.....+.||+||+
T Consensus 1 I~I~G~GaiG~~~a--~~L~~~g~~V~l~~r~~-~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv 73 (151)
T PF02558_consen 1 ILIIGAGAIGSLYA--ARLAQAGHDVTLVSRSP-RLEA----IKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIV 73 (151)
T ss_dssp EEEESTSHHHHHHH--HHHHHTTCEEEEEESHH-HHHH----HHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE
T ss_pred CEEECcCHHHHHHH--HHHHHCCCceEEEEccc-cHHh----hhheeEEEEecccceecccccccCcchhccCCCcEEEE
Confidence 68899997654322 22113799999999998 4333 223331 0001111111111 11113357999998
Q ss_pred cccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061 209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVR 239 (284)
Q Consensus 209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r 239 (284)
+.-- .+-..+++.+.+.+.|++.+++-
T Consensus 74 ~vKa----~~~~~~l~~l~~~~~~~t~iv~~ 100 (151)
T PF02558_consen 74 AVKA----YQLEQALQSLKPYLDPNTTIVSL 100 (151)
T ss_dssp -SSG----GGHHHHHHHHCTGEETTEEEEEE
T ss_pred Eecc----cchHHHHHHHhhccCCCcEEEEE
Confidence 7421 34466899999999999655543
No 473
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=93.44 E-value=0.36 Score=45.50 Aligned_cols=100 Identities=20% Similarity=0.173 Sum_probs=65.0
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc-cc--ccCCC
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ-VK--EKLGE 202 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~-~~--~~~~~ 202 (284)
...++.+||..|+|.+|..++.+|+ ..|.+ |++++.+++..+.++ .+| ...-+.....+..+ +. .....
T Consensus 179 ~~~~g~~vLI~g~g~vG~a~i~lak--~~G~~~Vi~~~~~~~~~~~~~----~~g-~~~vv~~~~~~~~~~l~~~~~~~~ 251 (363)
T cd08279 179 RVRPGDTVAVIGCGGVGLNAIQGAR--IAGASRIIAVDPVPEKLELAR----RFG-ATHTVNASEDDAVEAVRDLTDGRG 251 (363)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHH--HcCCCcEEEEcCCHHHHHHHH----HhC-CeEEeCCCCccHHHHHHHHcCCCC
Confidence 4577899999999999999999998 46775 999999988766654 345 21111111111111 11 11235
Q ss_pred ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 203 YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 203 fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+|+++-...- ...+....+.++++|+++.-.
T Consensus 252 vd~vld~~~~-------~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 252 ADYAFEAVGR-------AATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred CCEEEEcCCC-------hHHHHHHHHHhhcCCeEEEEe
Confidence 9988743321 246788899999999988654
No 474
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=93.42 E-value=0.2 Score=48.56 Aligned_cols=115 Identities=19% Similarity=0.180 Sum_probs=72.5
Q ss_pred eCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC--CCccEEEecccc-cCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061 163 DIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL--GEYDCIFLAALV-GMSKEEKVKIIKHIRKYMKDGGVLLVR 239 (284)
Q Consensus 163 Did~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~--~~fD~V~~aa~v-~~~~~~k~~il~~l~~~l~pGg~lv~r 239 (284)
|..|.-+..-.=-.-+.+ + ++|+++++++.+.+... +.||.+++.-.. =|+.++-.+.++.+.+.++|||++++|
T Consensus 256 ~~~P~YL~~e~f~~lr~~-~-drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~R 333 (380)
T PF11899_consen 256 DCCPPYLRPENFEALRAR-L-DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWR 333 (380)
T ss_pred CCCChhhcHhHHHHHhcC-C-CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 555555443322222445 3 89999999999987643 579987655443 567889999999999999999999999
Q ss_pred ecCccccccCccCCCccCCCcEE--EEEecCC--cc--eeeeEEEEee
Q 036061 240 SAKGARAFLYPVVEKHDLLDFEL--LSVFHPT--NE--VINSVVLVRK 281 (284)
Q Consensus 240 ~~~glr~~lYp~v~~~dl~gfe~--~~~~hP~--~~--v~nsvi~~r~ 281 (284)
++.- .-.||..-..+--||+. ....|+. |. +..|+.+++|
T Consensus 334 sa~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~DR~~~Y~~f~v~~k 379 (380)
T PF11899_consen 334 SAAV--PPWYPGRFLLERWGFDEELSAELHAGYIDRVNMYGSFHVATK 379 (380)
T ss_pred eCCC--CCCCcccccHHhhcccHHHHHHhcCCCCCcCcccCcEEEEEe
Confidence 9632 22344322001112221 2234555 44 5667777765
No 475
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=93.41 E-value=0.13 Score=50.76 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=29.8
Q ss_pred CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCCh
Q 036061 130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDE 166 (284)
Q Consensus 130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~ 166 (284)
.+++|+.||+||.|+++...++ ..|..|+.+|..+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~--~~G~~V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILA--RAGVQVVVFDRHP 174 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEecCC
Confidence 5689999999999999887766 4689999999764
No 476
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=93.38 E-value=0.56 Score=44.00 Aligned_cols=101 Identities=15% Similarity=0.270 Sum_probs=67.9
Q ss_pred CCCCCCEEEEeccC-CChhHHHHHHhhcCCCcEEE-----EEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC
Q 036061 127 GVVNPKKVAFVGSG-PMPLTSIVMAKNHLKSTHFD-----NFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL 200 (284)
Q Consensus 127 ~~~~~~~VL~IGsG-~lp~tai~LA~~~~~g~~V~-----~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~ 200 (284)
+.-.+.+++++|-| .++-|.+..+. ..|..|+ +++.+++.+++|+++++..|. .|++. -|. ....
T Consensus 149 g~l~g~k~a~vGDgNNv~nSl~~~~a--~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~---~i~~t-~d~---~eAv 219 (310)
T COG0078 149 GSLKGLKLAYVGDGNNVANSLLLAAA--KLGMDVRIATPKGYEPDPEVVEKAKENAKESGG---KITLT-EDP---EEAV 219 (310)
T ss_pred CcccCcEEEEEcCcchHHHHHHHHHH--HhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCC---eEEEe-cCH---HHHh
Confidence 44688999999999 44444444433 5677665 679999999999999998873 56663 333 3344
Q ss_pred CCccEEEecccccCChHHH-----------HHHHHHHHhhcCCCcEE
Q 036061 201 GEYDCIFLAALVGMSKEEK-----------VKIIKHIRKYMKDGGVL 236 (284)
Q Consensus 201 ~~fD~V~~aa~v~~~~~~k-----------~~il~~l~~~l~pGg~l 236 (284)
.+-|+|+.+..+.|..+.. .++=+++....+|+++|
T Consensus 220 ~gADvvyTDvWvSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~if 266 (310)
T COG0078 220 KGADVVYTDVWVSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIF 266 (310)
T ss_pred CCCCEEEecCcccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEE
Confidence 5789999998887644332 23334566666664443
No 477
>PRK08818 prephenate dehydrogenase; Provisional
Probab=93.38 E-value=0.29 Score=47.24 Aligned_cols=78 Identities=17% Similarity=0.138 Sum_probs=51.3
Q ss_pred CCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEec
Q 036061 131 PKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLA 209 (284)
Q Consensus 131 ~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~a 209 (284)
..+|..||. |-+|-+-...-+ ...+.+|+++|.+. .+. .+. .....+.|+|+++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk-~~~~~~V~g~D~~d------------~~~---------~~~---~~~v~~aDlVila 58 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLR-TRMQLEVIGHDPAD------------PGS---------LDP---ATLLQRADVLIFS 58 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHH-hcCCCEEEEEcCCc------------ccc---------CCH---HHHhcCCCEEEEe
Confidence 469999999 977765222222 12488999999851 110 011 1223578999998
Q ss_pred ccccCChHHHHHHHHHHHhh---cCCCcEEE
Q 036061 210 ALVGMSKEEKVKIIKHIRKY---MKDGGVLL 237 (284)
Q Consensus 210 a~v~~~~~~k~~il~~l~~~---l~pGg~lv 237 (284)
.-+ ..-.++++++.+. ++||.++.
T Consensus 59 vPv----~~~~~~l~~l~~~~~~l~~~~iVt 85 (370)
T PRK08818 59 API----RHTAALIEEYVALAGGRAAGQLWL 85 (370)
T ss_pred CCH----HHHHHHHHHHhhhhcCCCCCeEEE
Confidence 776 6677889998876 68877654
No 478
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=93.38 E-value=0.76 Score=37.30 Aligned_cols=89 Identities=21% Similarity=0.217 Sum_probs=60.9
Q ss_pred CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccC-CCccEEEe
Q 036061 130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKL-GEYDCIFL 208 (284)
Q Consensus 130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~-~~fD~V~~ 208 (284)
...||.+||-|-...-|-.|++ .|+.|+++||.+. ..+ ..++|+.-|+++-.-.. ..-|+|+.
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e---~g~dv~atDI~~~----------~a~---~g~~~v~DDitnP~~~iY~~A~lIYS 76 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAE---RGFDVLATDINEK----------TAP---EGLRFVVDDITNPNISIYEGADLIYS 76 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHH---cCCcEEEEecccc----------cCc---ccceEEEccCCCccHHHhhCccceee
Confidence 4569999999988888888888 7899999999987 111 35799999997632222 35688874
Q ss_pred cccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
-. ++++-...+-.+.+.++ +.+.++.
T Consensus 77 iR----pppEl~~~ildva~aVg--a~l~I~p 102 (129)
T COG1255 77 IR----PPPELQSAILDVAKAVG--APLYIKP 102 (129)
T ss_pred cC----CCHHHHHHHHHHHHhhC--CCEEEEe
Confidence 32 23555555666666554 4444443
No 479
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=93.35 E-value=0.34 Score=44.11 Aligned_cols=74 Identities=19% Similarity=0.242 Sum_probs=48.9
Q ss_pred HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecccccCChHHHHHHHHHHH
Q 036061 148 VMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALVGMSKEEKVKIIKHIR 227 (284)
Q Consensus 148 ~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~v~~~~~~k~~il~~l~ 227 (284)
.|.+ ..+..+|+++|++++..+.|++ .|. .+.. ..+ . ....++|+|+++.-+ ..-.++++++.
T Consensus 4 aL~~-~g~~~~v~g~d~~~~~~~~a~~----~g~-~~~~---~~~-~---~~~~~~DlvvlavP~----~~~~~~l~~~~ 66 (258)
T PF02153_consen 4 ALRK-AGPDVEVYGYDRDPETLEAALE----LGI-IDEA---STD-I---EAVEDADLVVLAVPV----SAIEDVLEEIA 66 (258)
T ss_dssp HHHH-TTTTSEEEEE-SSHHHHHHHHH----TTS-SSEE---ESH-H---HHGGCCSEEEE-S-H----HHHHHHHHHHH
T ss_pred HHHh-CCCCeEEEEEeCCHHHHHHHHH----CCC-eeec---cCC-H---hHhcCCCEEEEcCCH----HHHHHHHHHhh
Confidence 3444 3567999999999999888775 463 2221 111 1 123468999998765 67789999999
Q ss_pred hhcCCCcEEEE
Q 036061 228 KYMKDGGVLLV 238 (284)
Q Consensus 228 ~~l~pGg~lv~ 238 (284)
+.+++|++++=
T Consensus 67 ~~~~~~~iv~D 77 (258)
T PF02153_consen 67 PYLKPGAIVTD 77 (258)
T ss_dssp CGS-TTSEEEE
T ss_pred hhcCCCcEEEE
Confidence 99999987654
No 480
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=93.32 E-value=0.33 Score=45.10 Aligned_cols=100 Identities=18% Similarity=0.165 Sum_probs=65.6
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE-ecccc-ccc-cCCCc
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVT-CDIMQ-VKE-KLGEY 203 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~-~D~~~-~~~-~~~~f 203 (284)
...++.+|+..|+|++|..++.+|+ ..|.+|++++.+++..+.++ .+| ...-+.... .|..+ +.. ..+.+
T Consensus 162 ~~~~~~~vlV~g~g~vg~~~~~~a~--~~G~~vi~~~~~~~~~~~~~----~~g-~~~~i~~~~~~~~~~~~~~~~~~~~ 234 (345)
T cd08260 162 RVKPGEWVAVHGCGGVGLSAVMIAS--ALGARVIAVDIDDDKLELAR----ELG-AVATVNASEVEDVAAAVRDLTGGGA 234 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHH--HcCCeEEEEeCCHHHHHHHH----HhC-CCEEEccccchhHHHHHHHHhCCCC
Confidence 3567889999999999999999999 46899999999988776664 356 211111111 12111 100 01269
Q ss_pred cEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 204 DCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 204 D~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
|+|+-. ++ . ...+....+.|+++|.++.-.
T Consensus 235 d~vi~~--~g---~--~~~~~~~~~~l~~~g~~i~~g 264 (345)
T cd08260 235 HVSVDA--LG---I--PETCRNSVASLRKRGRHVQVG 264 (345)
T ss_pred CEEEEc--CC---C--HHHHHHHHHHhhcCCEEEEeC
Confidence 998843 21 1 235678889999999988643
No 481
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=93.32 E-value=0.65 Score=41.94 Aligned_cols=97 Identities=10% Similarity=0.150 Sum_probs=64.0
Q ss_pred CCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc-ccccCCCccE
Q 036061 128 VVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ-VKEKLGEYDC 205 (284)
Q Consensus 128 ~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~-~~~~~~~fD~ 205 (284)
..++.+||..|+ |++|..++.+|+ ..|++|++++.+++..+.++ .+| . +.+-....+..+ +......+|+
T Consensus 140 ~~~g~~vlV~ga~g~~g~~~~~~a~--~~g~~v~~~~~~~~~~~~~~----~~g-~-~~~~~~~~~~~~~i~~~~~~~d~ 211 (320)
T cd08243 140 LQPGDTLLIRGGTSSVGLAALKLAK--ALGATVTATTRSPERAALLK----ELG-A-DEVVIDDGAIAEQLRAAPGGFDK 211 (320)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHH----hcC-C-cEEEecCccHHHHHHHhCCCceE
Confidence 467899999996 889999999999 47899999999987655553 456 2 222111111111 1111246999
Q ss_pred EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
|+-+.. . ..+....+.++++|+++.-.
T Consensus 212 vl~~~~------~--~~~~~~~~~l~~~g~~v~~g 238 (320)
T cd08243 212 VLELVG------T--ATLKDSLRHLRPGGIVCMTG 238 (320)
T ss_pred EEECCC------h--HHHHHHHHHhccCCEEEEEc
Confidence 884322 1 35778889999999987643
No 482
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=93.31 E-value=0.46 Score=44.01 Aligned_cols=101 Identities=16% Similarity=0.115 Sum_probs=64.8
Q ss_pred cCCCCCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccc-cc--ccCC
Q 036061 126 NGVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQ-VK--EKLG 201 (284)
Q Consensus 126 ~~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~-~~--~~~~ 201 (284)
....++.+|+..|+|++|..++.+|++ .|.. |++++.+++..+.++ .+| ...-+....-+..+ +. ....
T Consensus 164 ~~~~~g~~vlI~g~g~vg~~~~~lak~--~G~~~v~~~~~~~~~~~~~~----~~g-a~~v~~~~~~~~~~~i~~~~~~~ 236 (345)
T cd08287 164 AGVRPGSTVVVVGDGAVGLCAVLAAKR--LGAERIIAMSRHEDRQALAR----EFG-ATDIVAERGEEAVARVRELTGGV 236 (345)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHH----HcC-CceEecCCcccHHHHHHHhcCCC
Confidence 345778899999999999999999993 5774 999999976655554 455 21111111111111 11 1123
Q ss_pred CccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 202 EYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 202 ~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
.+|+++-... . ...+....+.++++|.++.-.
T Consensus 237 ~~d~il~~~g-----~--~~~~~~~~~~l~~~g~~v~~g 268 (345)
T cd08287 237 GADAVLECVG-----T--QESMEQAIAIARPGGRVGYVG 268 (345)
T ss_pred CCCEEEECCC-----C--HHHHHHHHHhhccCCEEEEec
Confidence 5899884321 1 246788899999999998754
No 483
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=93.30 E-value=0.59 Score=38.31 Aligned_cols=74 Identities=16% Similarity=0.076 Sum_probs=42.9
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCC-CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLK-STHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~-g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~ 207 (284)
..+++|+.+|+|.+|.+...... .. +..|+.+|.+++..+...+ ..+. . .+.....|..+ ...++|+|+
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~--~~g~~~v~v~~r~~~~~~~~~~---~~~~-~-~~~~~~~~~~~---~~~~~Dvvi 86 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALA--ELGAAKIVIVNRTLEKAKALAE---RFGE-L-GIAIAYLDLEE---LLAEADLII 86 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHH--HCCCCEEEEEcCCHHHHHHHHH---HHhh-c-ccceeecchhh---ccccCCEEE
Confidence 45789999999966554333222 23 4789999999876554333 3331 0 01222233322 245799999
Q ss_pred ecccc
Q 036061 208 LAALV 212 (284)
Q Consensus 208 ~aa~v 212 (284)
.+.-.
T Consensus 87 ~~~~~ 91 (155)
T cd01065 87 NTTPV 91 (155)
T ss_pred eCcCC
Confidence 77543
No 484
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=93.28 E-value=0.76 Score=42.96 Aligned_cols=99 Identities=18% Similarity=0.210 Sum_probs=64.7
Q ss_pred eccCCChhHHHHHHhhcCCCcEEEEEeCChH-HHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEecccc---
Q 036061 137 VGSGPMPLTSIVMAKNHLKSTHFDNFDIDEA-ANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFLAALV--- 212 (284)
Q Consensus 137 IGsG~lp~tai~LA~~~~~g~~V~~iDid~~-ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~aa~v--- 212 (284)
||+|..|.+...+........++.-+|++++ +-..|..+-+....+..++++..+|- .++++.|+|++.+.+
T Consensus 2 IGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~----~~~~daDivVitag~~rk 77 (299)
T TIGR01771 2 IGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDY----SDCKDADLVVITAGAPQK 77 (299)
T ss_pred CCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCH----HHHCCCCEEEECCCCCCC
Confidence 7999888776665442334457999999765 56667777666543334566665443 345678999988765
Q ss_pred -cCChHH--------HHHHHHHHHhhcCCCcEEEEEe
Q 036061 213 -GMSKEE--------KVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 213 -~~~~~~--------k~~il~~l~~~l~pGg~lv~r~ 240 (284)
+|+..+ -.++.+.+.++ .|.|++++-+
T Consensus 78 ~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvs 113 (299)
T TIGR01771 78 PGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVAT 113 (299)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeC
Confidence 444322 24566666665 7889888765
No 485
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.27 E-value=0.69 Score=43.25 Aligned_cols=102 Identities=16% Similarity=0.281 Sum_probs=59.6
Q ss_pred CEEEEeccCCChhH-HHHHHhhcCCCcEEEEEeCChHHHHHHHHH---HHhc-CC-CCCCeEEEEeccccccccCCCccE
Q 036061 132 KKVAFVGSGPMPLT-SIVMAKNHLKSTHFDNFDIDEAANDVARQI---VSSD-IE-FEKRMKFVTCDIMQVKEKLGEYDC 205 (284)
Q Consensus 132 ~~VL~IGsG~lp~t-ai~LA~~~~~g~~V~~iDid~~ai~~Ar~~---~~~~-G~-l~~~I~f~~~D~~~~~~~~~~fD~ 205 (284)
++|..||+|.+|.. +..|++ .|..|+.++.+++.++.-++. ...+ |. +...+++ +.|..+.. .+.+|+
T Consensus 1 MkI~IiGaGa~G~ala~~L~~---~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~--~~~~Dl 74 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSS---KKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISV-KSAIDEVL--SDNATC 74 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHH---CCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEE-eCCHHHHH--hCCCCE
Confidence 37999999988764 223344 678999999998765544431 1111 10 1122333 23332211 146899
Q ss_pred EEecccccCChHHHHHHHHHHHh-hcCCCcEEEEEecCcc
Q 036061 206 IFLAALVGMSKEEKVKIIKHIRK-YMKDGGVLLVRSAKGA 244 (284)
Q Consensus 206 V~~aa~v~~~~~~k~~il~~l~~-~l~pGg~lv~r~~~gl 244 (284)
||++.- ...-..+++.+.. .++++..++. ..+|+
T Consensus 75 iiiavk----s~~~~~~l~~l~~~~l~~~~~vv~-~~nGi 109 (326)
T PRK14620 75 IILAVP----TQQLRTICQQLQDCHLKKNTPILI-CSKGI 109 (326)
T ss_pred EEEEeC----HHHHHHHHHHHHHhcCCCCCEEEE-EEcCe
Confidence 987632 2445678888887 8888876655 33555
No 486
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=93.22 E-value=0.084 Score=49.61 Aligned_cols=107 Identities=21% Similarity=0.236 Sum_probs=71.7
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccc--ccc-------
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIM--QVK------- 197 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~--~~~------- 197 (284)
+..+|.+++-+|-|-.|+.++-.+. ..|+-|+..|.-+..-+.=+..-++....+ .-..++.. +.+
T Consensus 160 gtv~pA~vlv~G~Gvagl~aiata~--~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~---~ee~~gGYAk~ms~~~~~~q 234 (356)
T COG3288 160 GTVSPAKVLVIGAGVAGLAAIATAV--RLGAIVTARDLRMFKKEQVESLGAKFLAVE---DEESAGGYAKEMSEEFIAKQ 234 (356)
T ss_pred ccccchhhhhhhHHHHHHHHHHHHh--hcceEEehhhhhhHHhhhhhhccccccccc---ccccCCCccccCCHHHHHHH
Confidence 3478899999999988888888887 689999999988766444333333322111 11122211 111
Q ss_pred -----ccCCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEE
Q 036061 198 -----EKLGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVR 239 (284)
Q Consensus 198 -----~~~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r 239 (284)
...+++|+|+..+++.-.+.+| -+-+.+..-||||.+++=-
T Consensus 235 ~~~~a~~~~~~DivITTAlIPGrpAP~-Lvt~~mv~sMkpGSViVDl 280 (356)
T COG3288 235 AELVAEQAKEVDIVITTALIPGRPAPK-LVTAEMVASMKPGSVIVDL 280 (356)
T ss_pred HHHHHHHhcCCCEEEEecccCCCCCch-hhHHHHHHhcCCCcEEEEe
Confidence 1235799999999994444555 4888999999999987643
No 487
>PRK07814 short chain dehydrogenase; Provisional
Probab=93.22 E-value=1.7 Score=38.87 Aligned_cols=77 Identities=14% Similarity=0.149 Sum_probs=51.4
Q ss_pred CCCEEEEeccCCChhHHHHHHhh-cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc----------
Q 036061 130 NPKKVAFVGSGPMPLTSIVMAKN-HLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE---------- 198 (284)
Q Consensus 130 ~~~~VL~IGsG~lp~tai~LA~~-~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~---------- 198 (284)
+++++|..|++ .|+..- ++++ ...|++|+.++.+++..+...+.+...| .++.++.+|+.+...
T Consensus 9 ~~~~vlItGas-ggIG~~-~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~ 83 (263)
T PRK07814 9 DDQVAVVTGAG-RGLGAA-IALAFAEAGADVLIAARTESQLDEVAEQIRAAG---RRAHVVAADLAHPEATAGLAGQAVE 83 (263)
T ss_pred CCCEEEEECCC-ChHHHH-HHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 46899999976 333322 2221 1378999999999887765555555444 478999999876432
Q ss_pred cCCCccEEEeccc
Q 036061 199 KLGEYDCIFLAAL 211 (284)
Q Consensus 199 ~~~~fD~V~~aa~ 211 (284)
..++.|+|+..+.
T Consensus 84 ~~~~id~vi~~Ag 96 (263)
T PRK07814 84 AFGRLDIVVNNVG 96 (263)
T ss_pred HcCCCCEEEECCC
Confidence 1346899987664
No 488
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.19 E-value=1.2 Score=38.87 Aligned_cols=77 Identities=16% Similarity=0.135 Sum_probs=49.8
Q ss_pred CCCEEEEeccCCChhHHHHHHhhc-CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc----------
Q 036061 130 NPKKVAFVGSGPMPLTSIVMAKNH-LKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE---------- 198 (284)
Q Consensus 130 ~~~~VL~IGsG~lp~tai~LA~~~-~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~---------- 198 (284)
.+++||.+|++ .++. ..++++. ..|++|++++.+++..+.....+.. + .++.++.+|+.+...
T Consensus 4 ~~~~vlItGas-g~iG-~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~---~~~~~~~~D~~~~~~~~~~~~~~~~ 77 (251)
T PRK07231 4 EGKVAIVTGAS-SGIG-EGIARRFAAEGARVVVTDRNEEAAERVAAEILA-G---GRAIAVAADVSDEADVEAAVAAALE 77 (251)
T ss_pred CCcEEEEECCC-ChHH-HHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C---CeEEEEECCCCCHHHHHHHHHHHHH
Confidence 46799999974 2332 2233321 3689999999999776655444433 3 468999999876321
Q ss_pred cCCCccEEEecccc
Q 036061 199 KLGEYDCIFLAALV 212 (284)
Q Consensus 199 ~~~~fD~V~~aa~v 212 (284)
..+.+|+|+.++..
T Consensus 78 ~~~~~d~vi~~ag~ 91 (251)
T PRK07231 78 RFGSVDILVNNAGT 91 (251)
T ss_pred HhCCCCEEEECCCC
Confidence 12368999877643
No 489
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=93.17 E-value=0.051 Score=44.43 Aligned_cols=77 Identities=22% Similarity=0.303 Sum_probs=48.1
Q ss_pred CeEEEEeccccccccC-CCccEEEecccccC-ChHH-HHHHHHHHHhhcCCCcEEEEEecCc-cccccCccCCCccCCCc
Q 036061 185 RMKFVTCDIMQVKEKL-GEYDCIFLAALVGM-SKEE-KVKIIKHIRKYMKDGGVLLVRSAKG-ARAFLYPVVEKHDLLDF 260 (284)
Q Consensus 185 ~I~f~~~D~~~~~~~~-~~fD~V~~aa~v~~-~~~~-k~~il~~l~~~l~pGg~lv~r~~~g-lr~~lYp~v~~~dl~gf 260 (284)
.+++..||+.+....+ ..||+||++++-.- +++. -.++++.+++.++|||++..-+..| .|.-| ...||
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a~~Vr~~L-------~~aGF 104 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSSAGAVRRAL-------QQAGF 104 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--BHHHHHHH-------HHCTE
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeechHHHHHHH-------HHcCC
Confidence 4567889998766654 57999999986411 1111 2789999999999999998866544 23322 23689
Q ss_pred EEEEEecC
Q 036061 261 ELLSVFHP 268 (284)
Q Consensus 261 e~~~~~hP 268 (284)
++...-..
T Consensus 105 ~v~~~~g~ 112 (124)
T PF05430_consen 105 EVEKVPGF 112 (124)
T ss_dssp EEEEEE-S
T ss_pred EEEEcCCC
Confidence 98655443
No 490
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=93.17 E-value=0.66 Score=42.38 Aligned_cols=106 Identities=15% Similarity=0.146 Sum_probs=64.8
Q ss_pred CCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHH----HHHhcCCCCCCeEEEEecccccc---ccCCC
Q 036061 130 NPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQ----IVSSDIEFEKRMKFVTCDIMQVK---EKLGE 202 (284)
Q Consensus 130 ~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~----~~~~~G~l~~~I~f~~~D~~~~~---~~~~~ 202 (284)
.+.+||++|||+ |+-.+..|. ..+++|+.-|.-.-....... +.+-.. ++..+....-+-.+.+ .-...
T Consensus 86 ~~~~vlELGsGt-glvG~~aa~--~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~-~g~~v~v~~L~Wg~~~~~~~~~~~ 161 (248)
T KOG2793|consen 86 KYINVLELGSGT-GLVGILAAL--LLGAEVVLTDLPKVVENLKFNRDKNNIALNQ-LGGSVIVAILVWGNALDVSFRLPN 161 (248)
T ss_pred cceeEEEecCCc-cHHHHHHHH--HhcceeccCCchhhHHHHHHhhhhhhhhhhh-cCCceeEEEEecCCcccHhhccCC
Confidence 577899999997 588887776 578898888876544333322 111111 2234444433333222 12234
Q ss_pred -ccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 203 -YDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 203 -fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
||+|+.+ .+--..+.-..++.-++..|..++++.+.+
T Consensus 162 ~~Dlilas-Dvvy~~~~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 162 PFDLILAS-DVVYEEESFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred cccEEEEe-eeeecCCcchhHHHHHHHHHhcCCeEEEEE
Confidence 8998744 332234566778889999999999666654
No 491
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.16 E-value=0.4 Score=37.40 Aligned_cols=64 Identities=17% Similarity=0.286 Sum_probs=41.0
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
-.+++||.||+|+.+..-+.. ....|++|+-+..+.+..+ +++++..-+. ..++..+|+||.
T Consensus 5 l~~~~vlVvGgG~va~~k~~~--Ll~~gA~v~vis~~~~~~~-------------~~i~~~~~~~---~~~l~~~~lV~~ 66 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARL--LLEAGAKVTVISPEIEFSE-------------GLIQLIRREF---EEDLDGADLVFA 66 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHH--HCCCTBEEEEEESSEHHHH-------------TSCEEEESS----GGGCTTESEEEE
T ss_pred cCCCEEEEECCCHHHHHHHHH--HHhCCCEEEEECCchhhhh-------------hHHHHHhhhH---HHHHhhheEEEe
Confidence 367899999999765544333 3467899999998871111 2567765553 345678999996
Q ss_pred cc
Q 036061 209 AA 210 (284)
Q Consensus 209 aa 210 (284)
+.
T Consensus 67 at 68 (103)
T PF13241_consen 67 AT 68 (103)
T ss_dssp -S
T ss_pred cC
Confidence 64
No 492
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.11 E-value=0.54 Score=41.37 Aligned_cols=70 Identities=13% Similarity=0.190 Sum_probs=41.8
Q ss_pred CCCCEEEEeccCCChhHHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEE
Q 036061 129 VNPKKVAFVGSGPMPLTSI-VMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIF 207 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai-~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~ 207 (284)
-.+++||.||+|.+|...+ .|.+ .|++|+.|+.+. .+...+++.. | .+++...+.. ..++..+|+||
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~---~ga~V~VIs~~~--~~~l~~l~~~-~----~i~~~~~~~~--~~~l~~adlVi 75 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLK---YGAHIVVISPEL--TENLVKLVEE-G----KIRWKQKEFE--PSDIVDAFLVI 75 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH---CCCeEEEEcCCC--CHHHHHHHhC-C----CEEEEecCCC--hhhcCCceEEE
Confidence 4678999999998766533 3333 678999986542 1222232222 3 4666544332 23456799988
Q ss_pred ecc
Q 036061 208 LAA 210 (284)
Q Consensus 208 ~aa 210 (284)
.+.
T Consensus 76 aaT 78 (202)
T PRK06718 76 AAT 78 (202)
T ss_pred EcC
Confidence 653
No 493
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.11 E-value=0.32 Score=48.14 Aligned_cols=74 Identities=11% Similarity=0.047 Sum_probs=47.8
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
-.+++|+.+|+|..|++...+.. ..|+.|++.|.++... .+.....| |++..+... ...+.++|+|+.
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~--~~G~~V~~~D~~~~~~---~~~l~~~g-----i~~~~~~~~--~~~~~~~d~vV~ 80 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLS--ELGCDVVVADDNETAR---HKLIEVTG-----VADISTAEA--SDQLDSFSLVVT 80 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHH--HCCCEEEEECCChHHH---HHHHHhcC-----cEEEeCCCc--hhHhcCCCEEEe
Confidence 34678999999977876554444 4788999999775432 23334445 456555321 122347999998
Q ss_pred cccccC
Q 036061 209 AALVGM 214 (284)
Q Consensus 209 aa~v~~ 214 (284)
+..|..
T Consensus 81 Spgi~~ 86 (473)
T PRK00141 81 SPGWRP 86 (473)
T ss_pred CCCCCC
Confidence 887743
No 494
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=93.10 E-value=0.35 Score=45.49 Aligned_cols=91 Identities=11% Similarity=0.055 Sum_probs=56.5
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccEEEe
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDCIFL 208 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~V~~ 208 (284)
..+++|..||.|.+|......++ ..|++|.++|.+++.. .+ . ..+.. ..++..-+.+.|+|++
T Consensus 134 l~g~tvgIvG~G~IG~~vA~~l~--afG~~V~~~~~~~~~~---------~~-~---~~~~~--~~~l~e~l~~aDvvv~ 196 (312)
T PRK15469 134 REDFTIGILGAGVLGSKVAQSLQ--TWGFPLRCWSRSRKSW---------PG-V---QSFAG--REELSAFLSQTRVLIN 196 (312)
T ss_pred cCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCCCCC---------CC-c---eeecc--cccHHHHHhcCCEEEE
Confidence 35789999999988865444333 3799999999875431 12 1 11211 1123333457899986
Q ss_pred cccccCChHHHHHHHHHHHhhcCCCcEEEE
Q 036061 209 AALVGMSKEEKVKIIKHIRKYMKDGGVLLV 238 (284)
Q Consensus 209 aa~v~~~~~~k~~il~~l~~~l~pGg~lv~ 238 (284)
..- .+++.+.-+-+...+.||||++||-
T Consensus 197 ~lP--lt~~T~~li~~~~l~~mk~ga~lIN 224 (312)
T PRK15469 197 LLP--NTPETVGIINQQLLEQLPDGAYLLN 224 (312)
T ss_pred CCC--CCHHHHHHhHHHHHhcCCCCcEEEE
Confidence 543 2445554445678889999986643
No 495
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=93.10 E-value=0.42 Score=43.67 Aligned_cols=95 Identities=12% Similarity=0.057 Sum_probs=62.6
Q ss_pred CCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecc--ccccc-cCCCccE
Q 036061 130 NPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDI--MQVKE-KLGEYDC 205 (284)
Q Consensus 130 ~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~--~~~~~-~~~~fD~ 205 (284)
.+.+||..|+ |++|..++.+|+ ..|.+|++++.+++..+.++ .+| . +.+ +...+. ..+.. ..+.+|+
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~--~~g~~v~~~~~~~~~~~~~~----~~g-~-~~v-~~~~~~~~~~~~~~~~~~~d~ 216 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILA--KLGYEVVASTGKADAADYLK----KLG-A-KEV-IPREELQEESIKPLEKQRWAG 216 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHH--HCCCeEEEEecCHHHHHHHH----HcC-C-CEE-EcchhHHHHHHHhhccCCcCE
Confidence 4679999998 899999999998 46889999999988766654 456 2 111 111110 10100 1135899
Q ss_pred EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEec
Q 036061 206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRSA 241 (284)
Q Consensus 206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~~ 241 (284)
|+-... . ..++...+.|+++|+++.-..
T Consensus 217 vld~~g------~--~~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 217 AVDPVG------G--KTLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred EEECCc------H--HHHHHHHHHhhcCCEEEEEee
Confidence 874322 1 356788899999999988653
No 496
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=93.09 E-value=0.47 Score=43.88 Aligned_cols=97 Identities=16% Similarity=0.216 Sum_probs=65.4
Q ss_pred CCCCCCEEEEeccCCChhHHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccc----c--cc
Q 036061 127 GVVNPKKVAFVGSGPMPLTSIVMAKNHLKSTH-FDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQV----K--EK 199 (284)
Q Consensus 127 ~~~~~~~VL~IGsG~lp~tai~LA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~----~--~~ 199 (284)
...++.+||-.|+|.+|..++.+|+ ..|.+ |++++.+++..+.+++ .| .. .++..+-.++ . ..
T Consensus 162 ~~~~g~~VlV~g~g~vg~~~~~la~--~~g~~~v~~~~~s~~~~~~~~~----~g-~~---~~~~~~~~~~~~~i~~~~~ 231 (343)
T cd08235 162 GIKPGDTVLVIGAGPIGLLHAMLAK--ASGARKVIVSDLNEFRLEFAKK----LG-AD---YTIDAAEEDLVEKVRELTD 231 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHH--HcCCcEEEEECCCHHHHHHHHH----hC-Cc---EEecCCccCHHHHHHHHhC
Confidence 4578899999999989999999998 46888 9999999888776643 45 21 2222111111 0 11
Q ss_pred CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 200 LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 200 ~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
...+|+|+-...- ...+....+.|+++|.++.-.
T Consensus 232 ~~~vd~vld~~~~-------~~~~~~~~~~l~~~g~~v~~~ 265 (343)
T cd08235 232 GRGADVVIVATGS-------PEAQAQALELVRKGGRILFFG 265 (343)
T ss_pred CcCCCEEEECCCC-------hHHHHHHHHHhhcCCEEEEEe
Confidence 2358999854331 246778889999999988754
No 497
>PRK09242 tropinone reductase; Provisional
Probab=93.07 E-value=2.3 Score=37.67 Aligned_cols=80 Identities=11% Similarity=0.070 Sum_probs=51.5
Q ss_pred CCCEEEEeccCCChhHHHHHHhh-cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc----------c
Q 036061 130 NPKKVAFVGSGPMPLTSIVMAKN-HLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK----------E 198 (284)
Q Consensus 130 ~~~~VL~IGsG~lp~tai~LA~~-~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~----------~ 198 (284)
.+++++..|++ .|+... ++++ ...|++|+.++.+++..+...+.+.... -..++.++.+|+.+.. .
T Consensus 8 ~~k~~lItGa~-~gIG~~-~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (257)
T PRK09242 8 DGQTALITGAS-KGIGLA-IAREFLGLGADVLIVARDADALAQARDELAEEF-PEREVHGLAADVSDDEDRRAILDWVED 84 (257)
T ss_pred CCCEEEEeCCC-chHHHH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC-CCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 46799999974 233322 2221 2378999999999887766555554431 1247889999987522 2
Q ss_pred cCCCccEEEecccc
Q 036061 199 KLGEYDCIFLAALV 212 (284)
Q Consensus 199 ~~~~fD~V~~aa~v 212 (284)
..+..|+|+.++..
T Consensus 85 ~~g~id~li~~ag~ 98 (257)
T PRK09242 85 HWDGLHILVNNAGG 98 (257)
T ss_pred HcCCCCEEEECCCC
Confidence 24578999877643
No 498
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=93.05 E-value=1.7 Score=39.25 Aligned_cols=93 Identities=14% Similarity=0.137 Sum_probs=63.3
Q ss_pred CCCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccccCCCccE
Q 036061 127 GVVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKEKLGEYDC 205 (284)
Q Consensus 127 ~~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~~~~~fD~ 205 (284)
...++.+|+..|+ |++|..++.+|+ ..|++|.+++.+++..+.+++ +|. . . .+...+ +... +.+|+
T Consensus 129 ~~~~~~~vli~g~~~~~g~~~~~~a~--~~g~~v~~~~~~~~~~~~~~~----~g~-~-~-~~~~~~--~~~~--~~~d~ 195 (305)
T cd08270 129 GPLLGRRVLVTGASGGVGRFAVQLAA--LAGAHVVAVVGSPARAEGLRE----LGA-A-E-VVVGGS--ELSG--APVDL 195 (305)
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHH----cCC-c-E-EEeccc--cccC--CCceE
Confidence 3345899999998 788999899998 478999999998877666544 552 2 1 111111 1111 36899
Q ss_pred EEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 206 IFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 206 V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
++-... . ..+....+.|+++|+++.-.
T Consensus 196 vl~~~g------~--~~~~~~~~~l~~~G~~v~~g 222 (305)
T cd08270 196 VVDSVG------G--PQLARALELLAPGGTVVSVG 222 (305)
T ss_pred EEECCC------c--HHHHHHHHHhcCCCEEEEEe
Confidence 884322 1 25688899999999988654
No 499
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=93.04 E-value=0.43 Score=43.50 Aligned_cols=96 Identities=13% Similarity=0.067 Sum_probs=61.4
Q ss_pred CCCCCCEEEEecc-CCChhHHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEecccccc------cc
Q 036061 127 GVVNPKKVAFVGS-GPMPLTSIVMAKNHLKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVK------EK 199 (284)
Q Consensus 127 ~~~~~~~VL~IGs-G~lp~tai~LA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~------~~ 199 (284)
...++.+||..|+ |.+|..++.+|+ ..|++++.+.-+++..+..+ ..| .. .++..+-.++. ..
T Consensus 136 ~~~~g~~vlI~g~~g~ig~~~~~~a~--~~G~~v~~~~~~~~~~~~~~----~~g-~~---~~~~~~~~~~~~~i~~~~~ 205 (324)
T cd08292 136 GVKPGQWLIQNAAGGAVGKLVAMLAA--ARGINVINLVRRDAGVAELR----ALG-IG---PVVSTEQPGWQDKVREAAG 205 (324)
T ss_pred CCCCCCEEEEcccccHHHHHHHHHHH--HCCCeEEEEecCHHHHHHHH----hcC-CC---EEEcCCCchHHHHHHHHhC
Confidence 4577899999875 789999999999 47888888877766544443 346 21 22211111111 11
Q ss_pred CCCccEEEecccccCChHHHHHHHHHHHhhcCCCcEEEEEe
Q 036061 200 LGEYDCIFLAALVGMSKEEKVKIIKHIRKYMKDGGVLLVRS 240 (284)
Q Consensus 200 ~~~fD~V~~aa~v~~~~~~k~~il~~l~~~l~pGg~lv~r~ 240 (284)
...+|+|+-... . ..+....+.++++|+++.-.
T Consensus 206 ~~~~d~v~d~~g------~--~~~~~~~~~l~~~g~~v~~g 238 (324)
T cd08292 206 GAPISVALDSVG------G--KLAGELLSLLGEGGTLVSFG 238 (324)
T ss_pred CCCCcEEEECCC------C--hhHHHHHHhhcCCcEEEEEe
Confidence 135999984322 1 23567788999999988653
No 500
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=93.00 E-value=2.1 Score=37.75 Aligned_cols=79 Identities=14% Similarity=0.057 Sum_probs=52.4
Q ss_pred CCCCEEEEeccCCChhHHHHHHhhc-CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEeccccccc---------
Q 036061 129 VNPKKVAFVGSGPMPLTSIVMAKNH-LKSTHFDNFDIDEAANDVARQIVSSDIEFEKRMKFVTCDIMQVKE--------- 198 (284)
Q Consensus 129 ~~~~~VL~IGsG~lp~tai~LA~~~-~~g~~V~~iDid~~ai~~Ar~~~~~~G~l~~~I~f~~~D~~~~~~--------- 198 (284)
-.+++|+..|++ .++.. .++++. ..|++|+.++.+++.++...+.++..| .++.++.+|+.+...
T Consensus 9 ~~~k~ilItGas-~~IG~-~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (256)
T PRK06124 9 LAGQVALVTGSA-RGLGF-EIARALAGAGAHVLVNGRNAATLEAAVAALRAAG---GAAEALAFDIADEEAVAAAFARID 83 (256)
T ss_pred CCCCEEEEECCC-chHHH-HHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC---CceEEEEccCCCHHHHHHHHHHHH
Confidence 357899999985 23332 233321 369999999999887766655555555 368899999876321
Q ss_pred -cCCCccEEEecccc
Q 036061 199 -KLGEYDCIFLAALV 212 (284)
Q Consensus 199 -~~~~fD~V~~aa~v 212 (284)
..+..|.|+.++..
T Consensus 84 ~~~~~id~vi~~ag~ 98 (256)
T PRK06124 84 AEHGRLDILVNNVGA 98 (256)
T ss_pred HhcCCCCEEEECCCC
Confidence 23467988866543
Done!