Query 036062
Match_columns 333
No_of_seqs 116 out of 702
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 09:02:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036062.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036062hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00939 2a57 Equilibrative N 100.0 2.2E-64 4.8E-69 496.0 28.1 328 2-333 44-402 (437)
2 KOG1479 Nucleoside transporter 100.0 1.6E-63 3.4E-68 475.7 23.2 309 2-333 55-373 (406)
3 PF01733 Nucleoside_tran: Nucl 100.0 5E-58 1.1E-62 433.3 0.2 259 70-333 1-278 (309)
4 PF02487 CLN3: CLN3 protein; 99.7 4.9E-16 1.1E-20 150.4 19.6 284 8-320 64-352 (402)
5 KOG3880 Predicted small molecu 99.1 5.2E-10 1.1E-14 103.6 8.5 278 7-318 66-357 (409)
6 KOG4255 Uncharacterized conser 98.5 2E-06 4.3E-11 80.4 13.1 155 3-161 46-214 (439)
7 TIGR00898 2A0119 cation transp 97.7 0.0084 1.8E-07 59.9 21.4 81 9-99 133-214 (505)
8 TIGR00893 2A0114 d-galactonate 97.7 0.0057 1.2E-07 57.6 19.1 100 7-116 33-137 (399)
9 TIGR00895 2A0115 benzoate tran 97.6 0.0017 3.8E-08 61.7 13.9 93 12-114 61-158 (398)
10 TIGR00881 2A0104 phosphoglycer 97.5 0.0028 6E-08 59.7 14.1 96 9-114 36-136 (379)
11 PF07690 MFS_1: Major Facilita 97.2 0.04 8.7E-07 51.4 17.9 97 7-113 36-137 (352)
12 TIGR00900 2A0121 H+ Antiporter 97.1 0.13 2.8E-06 48.1 21.0 102 9-115 40-146 (365)
13 TIGR00886 2A0108 nitrite extru 97.1 0.065 1.4E-06 50.6 19.0 84 6-98 40-123 (366)
14 TIGR00883 2A0106 metabolite-pr 97.1 0.05 1.1E-06 51.4 17.8 95 21-117 53-152 (394)
15 TIGR00891 2A0112 putative sial 97.1 0.18 3.8E-06 48.1 21.7 97 9-115 53-154 (405)
16 TIGR00710 efflux_Bcr_CflA drug 97.1 0.088 1.9E-06 50.0 19.4 80 9-98 46-126 (385)
17 PRK10642 proline/glycine betai 97.0 0.071 1.5E-06 53.4 19.4 96 20-117 74-174 (490)
18 TIGR00887 2A0109 phosphate:H+ 97.0 0.13 2.7E-06 51.7 21.0 151 7-162 60-229 (502)
19 PRK11663 regulatory protein Uh 97.0 0.13 2.7E-06 50.7 20.7 97 9-115 64-165 (434)
20 PRK11551 putative 3-hydroxyphe 96.9 0.18 4E-06 48.5 20.0 97 10-116 57-158 (406)
21 PRK03699 putative transporter; 96.7 0.11 2.5E-06 50.1 17.0 72 251-325 245-316 (394)
22 TIGR00879 SP MFS transporter, 96.6 0.16 3.5E-06 49.2 17.4 103 8-117 76-183 (481)
23 PRK03545 putative arabinose tr 96.6 0.28 6E-06 47.3 18.9 95 12-116 53-152 (390)
24 PRK11273 glpT sn-glycerol-3-ph 96.6 0.53 1.2E-05 46.5 21.1 93 12-110 72-169 (452)
25 TIGR00885 fucP L-fucose:H+ sym 96.5 0.39 8.5E-06 47.1 19.4 99 10-115 45-148 (410)
26 PRK08633 2-acyl-glycerophospho 96.4 0.18 3.9E-06 55.6 18.6 99 11-116 55-158 (1146)
27 PLN00028 nitrate transmembrane 96.4 0.5 1.1E-05 47.2 20.2 21 250-270 291-311 (476)
28 TIGR00892 2A0113 monocarboxyla 96.4 0.3 6.5E-06 48.5 18.3 75 250-324 279-354 (455)
29 PRK09556 uhpT sugar phosphate 96.3 0.29 6.3E-06 48.6 17.8 104 8-116 69-177 (467)
30 TIGR00890 2A0111 Oxalate/Forma 96.2 0.33 7.1E-06 45.5 16.7 92 11-112 46-141 (377)
31 TIGR00712 glpT glycerol-3-phos 96.2 0.66 1.4E-05 45.6 19.3 100 10-115 68-172 (438)
32 KOG0569 Permease of the major 96.1 0.46 9.9E-06 47.9 17.9 143 8-163 65-210 (485)
33 TIGR00899 2A0120 sugar efflux 96.0 0.72 1.6E-05 43.5 18.3 23 303-325 288-310 (375)
34 PRK10489 enterobactin exporter 96.0 1.4 3.1E-05 42.6 20.4 101 10-115 59-164 (417)
35 PRK09952 shikimate transporter 95.9 0.74 1.6E-05 45.4 18.4 92 23-116 84-180 (438)
36 TIGR01272 gluP glucose/galacto 95.9 0.32 6.9E-06 45.8 15.0 86 64-152 8-109 (310)
37 PRK11102 bicyclomycin/multidru 95.8 1.5 3.2E-05 41.6 19.3 96 10-115 33-133 (377)
38 PRK12382 putative transporter; 95.7 0.87 1.9E-05 43.7 17.6 67 252-321 254-320 (392)
39 PRK10213 nepI ribonucleoside t 95.7 2.2 4.7E-05 41.4 20.2 94 12-115 64-162 (394)
40 PRK10091 MFS transport protein 95.4 2.1 4.6E-05 41.0 19.0 98 7-114 42-144 (382)
41 TIGR01299 synapt_SV2 synaptic 95.4 1.7 3.7E-05 46.2 19.5 146 7-163 206-360 (742)
42 cd06174 MFS The Major Facilita 95.4 1.7 3.8E-05 39.9 17.7 76 9-94 40-115 (352)
43 TIGR00901 2A0125 AmpG-related 95.4 2.5 5.5E-05 39.8 20.7 48 71-118 88-140 (356)
44 COG0738 FucP Fucose permease [ 95.4 3.1 6.8E-05 40.8 19.5 68 23-97 68-135 (422)
45 TIGR00711 efflux_EmrB drug res 95.0 2.3 5.1E-05 41.8 18.4 83 6-98 40-123 (485)
46 PRK05122 major facilitator sup 95.0 2.2 4.7E-05 41.0 17.7 88 9-98 57-145 (399)
47 PRK10133 L-fucose transporter; 94.9 3.8 8.3E-05 40.4 19.3 100 10-116 68-172 (438)
48 PRK10077 xylE D-xylose transpo 94.8 2.6 5.6E-05 41.5 18.0 94 8-101 60-156 (479)
49 PF05977 MFS_3: Transmembrane 94.6 3.3 7.1E-05 42.3 18.5 85 10-99 52-137 (524)
50 TIGR00894 2A0114euk Na(+)-depe 94.6 2.7 5.8E-05 41.5 17.6 98 9-114 82-184 (465)
51 PRK10473 multidrug efflux syst 94.3 5.1 0.00011 38.3 19.2 78 11-98 46-124 (392)
52 TIGR00896 CynX cyanate transpo 94.3 4.7 0.0001 38.0 19.1 94 11-115 43-140 (355)
53 KOG2533 Permease of the major 94.2 0.36 7.7E-06 48.9 10.2 202 3-228 81-290 (495)
54 PLN00028 nitrate transmembrane 94.2 0.63 1.4E-05 46.5 12.0 33 69-101 351-383 (476)
55 PRK06814 acylglycerophosphoeth 94.0 7.6 0.00016 43.1 21.0 53 66-118 108-165 (1140)
56 TIGR00805 oat sodium-independe 93.9 3 6.5E-05 43.5 16.8 110 6-115 71-226 (633)
57 KOG2504 Monocarboxylate transp 93.7 1.8 3.9E-05 44.0 14.3 74 250-325 336-410 (509)
58 TIGR00792 gph sugar (Glycoside 93.4 8.1 0.00018 37.4 20.3 51 66-116 99-155 (437)
59 TIGR02332 HpaX 4-hydroxyphenyl 93.2 4.8 0.0001 39.2 16.2 94 13-116 53-151 (412)
60 PRK12307 putative sialic acid 93.1 8.9 0.00019 37.0 20.8 95 10-114 60-159 (426)
61 PRK15402 multidrug efflux syst 92.9 9.3 0.0002 36.8 19.1 78 11-98 56-134 (406)
62 PRK11902 ampG muropeptide tran 92.7 10 0.00022 36.6 19.7 93 18-117 47-150 (402)
63 PRK15011 sugar efflux transpor 92.6 8.9 0.00019 36.9 16.9 16 254-269 259-274 (393)
64 PRK11652 emrD multidrug resist 92.5 10 0.00022 36.3 18.8 36 10-45 50-85 (394)
65 PRK11043 putative transporter; 92.4 11 0.00023 36.2 18.6 34 11-44 49-82 (401)
66 PRK11128 putative 3-phenylprop 92.4 3.6 7.7E-05 39.4 13.8 71 253-327 246-317 (382)
67 PRK09874 drug efflux system pr 91.8 12 0.00026 35.6 20.3 69 251-322 262-330 (408)
68 KOG3764 Vesicular amine transp 91.0 2 4.4E-05 42.2 10.1 82 19-110 119-204 (464)
69 COG2271 UhpC Sugar phosphate p 90.8 18 0.0004 35.9 18.8 66 211-279 252-321 (448)
70 PRK09848 glucuronide transport 90.1 12 0.00025 36.8 15.1 69 18-94 279-347 (448)
71 TIGR00902 2A0127 phenyl propri 90.1 15 0.00033 35.1 15.6 70 253-329 246-319 (382)
72 COG2814 AraJ Arabinose efflux 89.5 23 0.0005 34.8 18.3 251 12-318 57-315 (394)
73 PRK15034 nitrate/nitrite trans 88.5 29 0.00063 34.8 20.2 72 21-97 88-159 (462)
74 PRK10054 putative transporter; 88.0 26 0.00057 33.8 17.6 36 14-49 54-89 (395)
75 TIGR00882 2A0105 oligosacchari 88.0 26 0.00055 33.6 18.4 29 301-329 305-333 (396)
76 KOG2532 Permease of the major 87.9 32 0.00069 34.6 18.4 93 11-111 81-173 (466)
77 PRK10429 melibiose:sodium symp 87.2 10 0.00023 37.6 12.6 76 14-94 277-352 (473)
78 PRK09705 cynX putative cyanate 85.9 34 0.00074 32.9 16.9 76 11-96 52-128 (393)
79 PRK10504 putative transporter; 85.7 15 0.00032 36.1 12.7 29 21-49 315-343 (471)
80 PRK09528 lacY galactoside perm 85.1 38 0.00082 32.7 16.7 27 301-327 313-339 (420)
81 PRK09669 putative symporter Ya 84.5 16 0.00035 35.8 12.3 75 12-94 273-347 (444)
82 PRK15403 multidrug efflux syst 84.3 42 0.00091 32.6 20.8 95 11-115 59-158 (413)
83 PRK10489 enterobactin exporter 83.8 25 0.00053 34.0 13.2 33 69-101 315-348 (417)
84 PF13347 MFS_2: MFS/sugar tran 83.7 17 0.00037 35.4 12.1 83 5-95 262-344 (428)
85 PF07672 MFS_Mycoplasma: Mycop 83.2 22 0.00048 33.0 11.6 75 246-321 140-218 (267)
86 PRK09669 putative symporter Ya 83.2 48 0.001 32.4 18.3 20 305-324 321-340 (444)
87 TIGR00806 rfc RFC reduced fola 82.8 59 0.0013 33.1 23.0 98 12-119 71-172 (511)
88 PF13347 MFS_2: MFS/sugar tran 82.4 48 0.0011 32.2 14.7 29 69-97 106-134 (428)
89 TIGR00880 2_A_01_02 Multidrug 82.3 21 0.00045 27.6 12.2 79 10-98 5-84 (141)
90 PRK10406 alpha-ketoglutarate t 81.5 55 0.0012 31.9 18.8 94 21-116 81-179 (432)
91 PRK09584 tppB putative tripept 81.1 35 0.00075 34.4 13.4 81 24-105 341-421 (500)
92 PRK11010 ampG muropeptide tran 81.0 64 0.0014 32.3 18.9 51 66-116 107-162 (491)
93 PRK14995 methyl viologen resis 80.4 66 0.0014 32.1 20.0 80 6-95 44-124 (495)
94 PRK03893 putative sialic acid 78.7 21 0.00046 35.2 10.9 22 12-33 320-341 (496)
95 PRK10207 dipeptide/tripeptide 78.6 43 0.00094 33.7 13.1 65 34-98 347-412 (489)
96 KOG0569 Permease of the major 78.0 19 0.00041 36.4 10.2 116 7-125 309-425 (485)
97 PRK11462 putative transporter; 77.7 28 0.0006 34.6 11.4 28 8-35 268-295 (460)
98 TIGR01299 synapt_SV2 synaptic 77.2 43 0.00094 35.8 13.1 95 11-115 603-702 (742)
99 PRK15075 citrate-proton sympor 76.8 76 0.0017 30.9 15.7 32 21-52 74-105 (434)
100 PF01770 Folate_carrier: Reduc 75.9 87 0.0019 31.0 19.4 33 13-45 51-83 (412)
101 PRK03893 putative sialic acid 75.8 85 0.0018 30.9 20.9 94 12-115 64-162 (496)
102 TIGR01301 GPH_sucrose GPH fami 74.1 1E+02 0.0022 31.1 15.8 51 67-117 115-172 (477)
103 TIGR00903 2A0129 major facilit 73.7 87 0.0019 30.0 13.6 130 11-159 34-167 (368)
104 PF03209 PUCC: PUCC protein; 73.5 99 0.0021 30.6 19.6 75 249-323 246-321 (403)
105 PRK10642 proline/glycine betai 73.0 35 0.00075 34.0 10.7 7 93-99 370-376 (490)
106 PRK10077 xylE D-xylose transpo 72.5 99 0.0022 30.2 14.6 42 12-53 315-356 (479)
107 PRK11102 bicyclomycin/multidru 71.9 79 0.0017 29.6 12.5 30 13-42 240-269 (377)
108 TIGR00892 2A0113 monocarboxyla 71.6 50 0.0011 32.6 11.4 30 69-98 336-366 (455)
109 cd06174 MFS The Major Facilita 70.7 64 0.0014 29.3 11.3 82 9-100 217-300 (352)
110 PRK10473 multidrug efflux syst 69.5 79 0.0017 30.0 12.0 34 12-45 248-281 (392)
111 TIGR00792 gph sugar (Glycoside 69.5 1.1E+02 0.0024 29.4 14.4 75 10-93 264-338 (437)
112 TIGR00879 SP MFS transporter, 68.5 78 0.0017 30.2 11.8 41 11-51 327-367 (481)
113 PRK10504 putative transporter; 67.9 1.3E+02 0.0027 29.5 18.8 81 8-98 50-131 (471)
114 TIGR00902 2A0127 phenyl propri 66.4 1.2E+02 0.0026 28.8 13.2 118 13-149 250-372 (382)
115 PRK15402 multidrug efflux syst 64.9 1.3E+02 0.0029 28.7 13.5 33 18-50 266-298 (406)
116 PRK03633 putative MFS family t 64.0 1.3E+02 0.0029 28.4 17.3 64 11-84 49-112 (381)
117 TIGR00710 efflux_Bcr_CflA drug 63.6 1.3E+02 0.0028 28.1 13.2 80 12-96 251-331 (385)
118 PRK11195 lysophospholipid tran 63.5 1.4E+02 0.0031 28.6 20.9 77 8-97 43-120 (393)
119 TIGR00897 2A0118 polyol permea 63.5 1.4E+02 0.0031 28.6 20.9 84 10-99 55-139 (402)
120 TIGR00889 2A0110 nucleoside tr 62.5 1.5E+02 0.0033 28.8 12.6 80 13-98 261-341 (418)
121 PRK08633 2-acyl-glycerophospho 61.6 1.1E+02 0.0025 33.7 12.8 82 12-103 278-360 (1146)
122 PF11700 ATG22: Vacuole efflux 60.9 1.9E+02 0.0041 29.1 24.6 74 249-323 319-400 (477)
123 PRK11646 multidrug resistance 59.9 99 0.0022 29.8 10.7 26 73-98 304-330 (400)
124 PRK09952 shikimate transporter 59.7 1.8E+02 0.0038 28.4 13.7 27 72-98 349-376 (438)
125 KOG0255 Synaptic vesicle trans 59.6 1.9E+02 0.0042 28.8 17.3 85 11-105 126-211 (521)
126 PRK11551 putative 3-hydroxyphe 59.1 1.1E+02 0.0024 29.0 10.9 78 12-99 264-342 (406)
127 KOG2325 Predicted transporter/ 58.8 2.1E+02 0.0046 29.0 13.8 108 12-124 80-192 (488)
128 TIGR00898 2A0119 cation transp 58.7 1.9E+02 0.0041 28.5 13.5 74 18-99 370-444 (505)
129 PTZ00207 hypothetical protein; 58.4 1.1E+02 0.0025 31.7 11.2 122 25-161 83-208 (591)
130 PF05977 MFS_3: Transmembrane 58.1 1.6E+02 0.0035 30.0 12.2 80 11-100 262-342 (524)
131 PRK11902 ampG muropeptide tran 57.3 1.5E+02 0.0032 28.4 11.5 23 75-97 316-339 (402)
132 TIGR01301 GPH_sucrose GPH fami 56.4 1.4E+02 0.0031 30.0 11.4 92 5-96 307-410 (477)
133 PF13038 DUF3899: Domain of un 56.2 86 0.0019 23.7 8.0 17 138-154 5-21 (92)
134 PF00083 Sugar_tr: Sugar (and 52.9 0.05 1.1E-06 53.3 -13.9 142 9-164 52-198 (451)
135 PRK03699 putative transporter; 52.6 90 0.0019 29.8 9.0 23 12-34 250-272 (394)
136 TIGR00889 2A0110 nucleoside tr 49.9 2.5E+02 0.0055 27.2 16.2 73 250-325 254-330 (418)
137 PRK09528 lacY galactoside perm 49.1 1.9E+02 0.0041 27.8 10.8 29 15-43 274-302 (420)
138 PF03547 Mem_trans: Membrane t 48.3 2.5E+02 0.0055 26.8 15.9 44 252-299 284-327 (385)
139 PRK12307 putative sialic acid 47.7 2.3E+02 0.0049 27.1 11.1 31 13-43 276-306 (426)
140 KOG0254 Predicted transporter 47.7 2.1E+02 0.0045 28.7 11.1 92 8-99 334-429 (513)
141 PF03825 Nuc_H_symport: Nucleo 47.6 2.6E+02 0.0056 27.3 11.4 138 13-159 253-396 (400)
142 PRK11404 putative PTS system 45.4 64 0.0014 32.7 6.8 48 72-122 377-425 (482)
143 PRK09705 cynX putative cyanate 45.3 2.8E+02 0.0061 26.5 11.9 36 11-46 248-283 (393)
144 PRK11462 putative transporter; 40.9 3.7E+02 0.008 26.6 20.2 43 74-116 117-165 (460)
145 PRK15034 nitrate/nitrite trans 40.5 3.3E+02 0.0071 27.4 11.0 66 26-96 309-376 (462)
146 PRK09556 uhpT sugar phosphate 38.5 3.9E+02 0.0085 26.2 13.3 22 12-33 303-324 (467)
147 PRK05122 major facilitator sup 37.9 3.5E+02 0.0077 25.5 13.1 78 12-99 258-336 (399)
148 PF07857 DUF1632: CEO family ( 37.0 63 0.0014 29.8 4.8 47 104-150 79-131 (254)
149 PRK11010 ampG muropeptide tran 36.2 4.5E+02 0.0097 26.2 12.7 38 77-114 331-369 (491)
150 PRK10207 dipeptide/tripeptide 36.1 4.1E+02 0.0089 26.6 11.1 31 302-332 378-412 (489)
151 TIGR00895 2A0115 benzoate tran 35.2 1.2E+02 0.0027 28.1 6.8 73 250-326 55-128 (398)
152 PRK09874 drug efflux system pr 35.0 1.6E+02 0.0036 27.7 7.8 110 210-322 16-126 (408)
153 TIGR00894 2A0114euk Na(+)-depe 34.8 4.4E+02 0.0095 25.6 11.3 40 74-113 369-408 (465)
154 TIGR01272 gluP glucose/galacto 33.7 1.8E+02 0.0039 27.1 7.6 75 11-96 186-261 (310)
155 PF07690 MFS_1: Major Facilita 33.4 1.3E+02 0.0027 27.5 6.5 70 20-96 260-329 (352)
156 PRK12382 putative transporter; 32.8 4.2E+02 0.0092 24.9 13.6 77 13-99 259-336 (392)
157 TIGR00924 yjdL_sub1_fam amino 32.3 5.1E+02 0.011 25.7 13.2 82 31-113 347-433 (475)
158 PF06912 DUF1275: Protein of u 31.7 3.5E+02 0.0075 23.5 11.6 111 28-154 74-184 (209)
159 PRK06814 acylglycerophosphoeth 31.3 3.7E+02 0.0081 29.9 10.7 34 68-101 336-370 (1140)
160 TIGR00788 fbt folate/biopterin 30.9 1.6E+02 0.0034 29.3 7.1 24 11-34 296-319 (468)
161 PRK11273 glpT sn-glycerol-3-ph 30.6 5.1E+02 0.011 25.2 13.5 20 12-31 298-317 (452)
162 PRK10429 melibiose:sodium symp 30.4 5.4E+02 0.012 25.3 22.9 51 66-116 106-162 (473)
163 PF06813 Nodulin-like: Nodulin 30.3 4E+02 0.0086 24.4 9.0 87 64-159 94-183 (250)
164 TIGR00880 2_A_01_02 Multidrug 30.1 91 0.002 23.7 4.3 27 301-327 49-75 (141)
165 TIGR00924 yjdL_sub1_fam amino 30.1 5.2E+02 0.011 25.6 10.7 24 302-325 380-403 (475)
166 COG4769 Predicted membrane pro 29.5 1.3E+02 0.0028 25.9 5.1 49 72-122 78-127 (181)
167 PRK10478 putative PTS system f 29.2 80 0.0017 30.7 4.4 47 73-122 252-299 (359)
168 COG2211 MelB Na+/melibiose sym 28.8 6.2E+02 0.013 25.6 12.6 45 10-54 279-323 (467)
169 TIGR00890 2A0111 Oxalate/Forma 28.2 4.6E+02 0.01 23.9 10.2 30 13-42 250-279 (377)
170 PRK10133 L-fucose transporter; 27.8 2E+02 0.0044 28.1 7.2 28 70-97 351-378 (438)
171 PF06609 TRI12: Fungal trichot 27.6 7.2E+02 0.015 26.0 11.2 51 277-328 379-430 (599)
172 KOG0252 Inorganic phosphate tr 26.9 7E+02 0.015 25.5 13.0 147 10-167 91-252 (538)
173 KOG2533 Permease of the major 26.4 6.9E+02 0.015 25.3 10.9 26 6-31 312-337 (495)
174 KOG2504 Monocarboxylate transp 26.1 2.7E+02 0.0058 28.4 7.8 66 11-84 341-406 (509)
175 PF11368 DUF3169: Protein of u 25.9 5E+02 0.011 23.5 9.9 23 98-120 11-33 (248)
176 PRK10213 nepI ribonucleoside t 25.9 1.7E+02 0.0038 28.0 6.2 73 251-327 59-132 (394)
177 PRK09584 tppB putative tripept 25.0 7E+02 0.015 24.9 19.5 31 302-332 381-415 (500)
178 PRK11646 multidrug resistance 24.0 6.4E+02 0.014 24.1 20.8 68 20-97 63-131 (400)
179 KOG1330 Sugar transporter/spin 24.0 7.8E+02 0.017 25.0 12.4 78 7-94 72-149 (493)
180 PF11700 ATG22: Vacuole efflux 23.4 7.6E+02 0.017 24.8 12.6 104 9-117 323-432 (477)
181 PF04145 Ctr: Ctr copper trans 22.8 1.4E+02 0.003 24.2 4.2 18 134-151 23-40 (144)
182 KOG2325 Predicted transporter/ 22.7 4.3E+02 0.0092 26.9 8.3 107 211-319 34-146 (488)
183 TIGR02718 sider_RhtX_FptX side 22.4 6.6E+02 0.014 23.6 19.8 43 73-115 104-151 (390)
184 TIGR00886 2A0108 nitrite extru 21.6 2.1E+02 0.0046 26.4 5.8 20 76-95 328-347 (366)
185 TIGR00901 2A0125 AmpG-related 21.0 4E+02 0.0087 24.6 7.6 7 115-121 330-336 (356)
186 PF09685 Tic20: Tic20-like pro 20.5 2.3E+02 0.0051 21.6 4.9 35 132-167 4-41 (109)
187 TIGR00881 2A0104 phosphoglycer 20.4 2.6E+02 0.0056 25.6 6.0 74 249-326 32-106 (379)
188 COG2223 NarK Nitrate/nitrite t 20.2 8.7E+02 0.019 24.2 13.9 93 21-120 67-159 (417)
No 1
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=100.00 E-value=2.2e-64 Score=495.95 Aligned_cols=328 Identities=23% Similarity=0.374 Sum_probs=268.4
Q ss_pred CCCCceehhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhH
Q 036062 2 YHPTRALTLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADA 81 (333)
Q Consensus 2 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~ 81 (333)
+|+++++++++++++++..+.+...++|++.+.|+..+++++++..++...+... +.+...+|+++|+++++.|++++
T Consensus 44 ~~~~~~~~~~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~--~~~~~~~f~~~~~~v~~~g~~~~ 121 (437)
T TIGR00939 44 KHFNTYYTLASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKV--QTSETGFFVTTMASVVIINSGMA 121 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeee--cCCcchHHHHHHHHHHHHHhhhh
Confidence 3678899999999999999999999999999999999988755444443332111 11234689999999999999999
Q ss_pred hhccchhhhcccCChHHHHHHHhhhhhhhHHHHHHHHHHHhhccCCccccchhhhHHhHHHHHHHHHHHHHHHHHcCCCh
Q 036062 82 HVRGGIVGDLSFMYPEFMQSFFAGLAASGALTSGLRLLTKAAFEKSHDGLRKGVMLFLAICTSFEFVCILLYAFFFPKLP 161 (333)
Q Consensus 82 ~~q~s~~gla~~~p~~~~~a~~~Gqg~aGi~~s~~~ii~~~~~~~~~~~~~~s~~iyF~~a~~~~~~~~~~~~~~l~k~~ 161 (333)
+.||+.+|++|.||++|+|++|+|||+||+++|++|++++++.+|++ +.+.++++||+++++++++|+++|. .++|+|
T Consensus 122 ~~q~s~~gla~~fp~~~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~-~~~~~a~~YF~~a~~v~l~~i~~~~-~l~k~~ 199 (437)
T TIGR00939 122 LLQGSLFGLAGVFPSTYSSAVMSGQGLAGVLTSLAMILVKASGNDSH-GLKKSALGYFGTPCVVQLICIVCYL-LLPKLP 199 (437)
T ss_pred hhcccchhhcccCCHHHHHHHHhcchhHHHHHHHHHHHHHHhcCCcc-chhhhhhhHHHHHHHHHHHHHHHHH-HHhcCH
Confidence 99999999999999999999999999999999999999999877755 7899999999999999999999999 999999
Q ss_pred HHHHHHHhhhhc--CCCCccchhhhh---------cccCcc--------chh-hhhHHhhhhccHHHHHHHHHHHHHHHH
Q 036062 162 IVKYFRSKAASE--GSKTVSADLAAA---------GIQTKA--------AQA-EDEAKQYERLSNKQLFIQNFDYALDLF 221 (333)
Q Consensus 162 ~~~~~~~~~~~~--~~~~~~~d~~~~---------~~~~~~--------~~~-~~~~~~~~~~~~~~v~~~i~~~~~~i~ 221 (333)
++|||.++...+ ++++.+++..++ .++.+. +.| ++++++.++.++++++||+|++++++|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~kki~~~~~~vf 279 (437)
T TIGR00939 200 FARYYLQKKLDKGAGEDETKGELRSKAEQNGIPHGGDQPSPTLVLDWEKEPESPDEPQKPLKTSVWVVFTKVWLLAFSVV 279 (437)
T ss_pred HHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccCCccchhcccCcHHHHHHHHHHHHHHHH
Confidence 999998654221 011100000000 000000 000 111223346789999999999999999
Q ss_pred HHhhhhceeccceeeecccccc-CCc-hHHHHHHHHHHHHHHhhhhhcccccccccCcchHHHHHHHHHHHHHHHHhhhh
Q 036062 222 LIYVLTLSIFPGFLYENTGQHR-LGE-WYSLVLIASYNVWDLIARYIPLVKCVKLESRKGLMITILCRFLLVPAFYFTAK 299 (333)
Q Consensus 222 l~f~vTl~vFPgi~~~~~~~~~-~~~-w~~~~~~~~fNlgD~iGR~l~~~~~~~~~~~~~l~~~~~~R~ifiplf~lc~~ 299 (333)
++|++||++|||+++++++.+. .++ |++++++++||+||++||.++.+..+|.+++|++++++++|++|||+|++||+
T Consensus 280 ~~F~vTL~vFPgv~~~i~~~~~~~~~~~~~~i~~~~fNvgD~vGR~~~~~~~~p~~~~~~l~i~s~~R~iFIPlf~lcn~ 359 (437)
T TIGR00939 280 FVFTVTLSVFPAITTAVTSSGLGLSNWFYPIICFLLFNLFDWLGRSLTSKFMWPDEDSRWLPILSFLRVLFIPLFLLCNY 359 (437)
T ss_pred HHHHHHHHhcCceEEEeeccCCCCCccHHHHHHHHHHHHHHHHHhhhhheeEeeCCCccchHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999998877654 345 58999999999999999999998877665666999999999999999999996
Q ss_pred c---------CchhHHHHHHHHHhhhcchhhhhhhcccCCCCC
Q 036062 300 Y---------GDQGWMIFLTSFLGLTNGYLTVCVMTVAPKGYK 333 (333)
Q Consensus 300 ~---------~~d~~~~i~~~lfgltNGy~~t~~m~~~P~~~~ 333 (333)
. ++|+++++++++||+||||++|++||+||++++
T Consensus 360 ~~~~~~p~~~~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~ 402 (437)
T TIGR00939 360 PQRSRLPVFFPGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVD 402 (437)
T ss_pred CccccCCeeecccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCC
Confidence 3 689999999999999999999999999999864
No 2
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.6e-63 Score=475.72 Aligned_cols=309 Identities=37% Similarity=0.596 Sum_probs=259.5
Q ss_pred CCCCceehhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHH---HHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhh
Q 036062 2 YHPTRALTLVYQPFALGTMAILAYNESKIDTRKRNITGYIIF---FASTLALLLLDLATSGEGGLGPFLGVCVFVALFGV 78 (333)
Q Consensus 2 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~ 78 (333)
++|++++++++++|+++...+|.+...| .+.|+..++.+. ++.++.++.++ .+..+.++|.++|++++++|.
T Consensus 55 ~~F~~~~~~~a~i~~ll~~~~n~~~~~~--~~~~~~~~l~~~~il~i~~l~~~~v~---~~~~~~~ff~vt~~~vv~~~~ 129 (406)
T KOG1479|consen 55 KNFTSSYTLAAQIPLLLFNLLNAFLNTR--LRTRVGYLLSLIAILFIVTLDLALVK---TDTWTNGFFLVTLIIVVLLNL 129 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhc---cCCccchhHHHHHHHHHHHhh
Confidence 4688899999999999999999998888 444444444332 22222233333 344568999999999999999
Q ss_pred hhHhhccchhhhcccCChHHHHHHHhhhhhhhHHHHHHHHHHHhhccCCccccchhhhHHhHHHHHHHHHHHHHHHHHcC
Q 036062 79 ADAHVRGGIVGDLSFMYPEFMQSFFAGLAASGALTSGLRLLTKAAFEKSHDGLRKGVMLFLAICTSFEFVCILLYAFFFP 158 (333)
Q Consensus 79 ~~~~~q~s~~gla~~~p~~~~~a~~~Gqg~aGi~~s~~~ii~~~~~~~~~~~~~~s~~iyF~~a~~~~~~~~~~~~~~l~ 158 (333)
++|++|||+||++|.||+||+||+|+||++||+++|++|+++|++.+| .++++++||+++.+++++|+++|. .++
T Consensus 130 a~a~~qgs~~G~a~~~P~~ytqavm~G~a~aG~l~Sl~~i~tka~~~~----~~~sA~~yF~~s~~~~llC~i~y~-~l~ 204 (406)
T KOG1479|consen 130 ANAVVQGSLYGLAGLFPSEYTQAVMSGQALAGTLTSLLRILTKAAFSD----SRTSALIYFITSTVILLLCFVLYL-VLP 204 (406)
T ss_pred hhhhhccchhhhhhcCCHHHHHHHHhcchhHhHHHHHHHHHHHHhcCC----CCceeehhHHHHHHHHHHHHHHHH-Hhh
Confidence 999999999999999999999999999999999999999999999765 359999999999999999999999 999
Q ss_pred CChHHHHHHHhhhhcCCCCccchhhhhcccCccchhhhhHHhhhhccHHHHHHHHHHHHHHHHHHhhhhceeccceeeec
Q 036062 159 KLPIVKYFRSKAASEGSKTVSADLAAAGIQTKAAQAEDEAKQYERLSNKQLFIQNFDYALDLFLIYVLTLSIFPGFLYEN 238 (333)
Q Consensus 159 k~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~i~l~f~vTl~vFPgi~~~~ 238 (333)
|+|++|||++++.+++++ .+++++|++.+.+++ ..+.|+++||+|.++++++++|+|||++|||+++++
T Consensus 205 ~lpf~~yy~~~~~~~~~~-----l~~~~~~~~~~~~~~------~~~~~~i~~k~~~~~~~i~lvy~VTLsiFPg~~~~~ 273 (406)
T KOG1479|consen 205 KLPFVRYYREKAGSIGSK-----LAAEGIESDSSLSNE------DDSLWDIFKKIKDLAFNIFLVYFVTLSIFPGFCSEV 273 (406)
T ss_pred cchHHHHHhhhccccccc-----ccccccccccccccc------cchHHHHHHHHHHHhhchheeeeeeeEecchhhccc
Confidence 999999998876654332 111222222111111 118999999999999999999999999999999999
Q ss_pred cccccCCchHHHHHHHH-HHHHHHhhhhhcccccccccCcchHHHHHHHHHHHHHHHHhhhh------cCchhHHHHHHH
Q 036062 239 TGQHRLGEWYSLVLIAS-YNVWDLIARYIPLVKCVKLESRKGLMITILCRFLLVPAFYFTAK------YGDQGWMIFLTS 311 (333)
Q Consensus 239 ~~~~~~~~w~~~~~~~~-fNlgD~iGR~l~~~~~~~~~~~~~l~~~~~~R~ifiplf~lc~~------~~~d~~~~i~~~ 311 (333)
++.+..++|++.+...+ ||++|++||.++.+.++ +++|.+++++++|++|||+|.+||+ +++|+|+++++.
T Consensus 274 ~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~--~~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~ 351 (406)
T KOG1479|consen 274 KSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTW--PDPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMS 351 (406)
T ss_pred ccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccC--CCCceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHH
Confidence 88777789998776666 99999999999998655 5799999999999999999999997 679999999999
Q ss_pred HHhhhcchhhhhhhcccCCCCC
Q 036062 312 FLGLTNGYLTVCVMTVAPKGYK 333 (333)
Q Consensus 312 lfgltNGy~~t~~m~~~P~~~~ 333 (333)
+||+||||+++++|++||+++|
T Consensus 352 ~lglsnGYltsl~m~~aPk~v~ 373 (406)
T KOG1479|consen 352 LLGLSNGYLTSLIMMYAPKQVK 373 (406)
T ss_pred HHHhccchHhhheehhcCCCCC
Confidence 9999999999999999999986
No 3
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=100.00 E-value=5e-58 Score=433.31 Aligned_cols=259 Identities=27% Similarity=0.521 Sum_probs=4.0
Q ss_pred HHHHHHHhhhhHhhccchhhhcccCChHHHHHHHhhhhhhhHHHHHHHHHHHhhccCCccccchhhhHHhHHHHHHHHHH
Q 036062 70 CVFVALFGVADAHVRGGIVGDLSFMYPEFMQSFFAGLAASGALTSGLRLLTKAAFEKSHDGLRKGVMLFLAICTSFEFVC 149 (333)
Q Consensus 70 l~~v~~~g~~~~~~q~s~~gla~~~p~~~~~a~~~Gqg~aGi~~s~~~ii~~~~~~~~~~~~~~s~~iyF~~a~~~~~~~ 149 (333)
|+.++++|++++++|||+||++|.||++|+|++|+|||+||+++|++|+++++..++ ++.++++||+++++++++|
T Consensus 1 m~~v~~~~~~~~~~q~s~~glas~~p~~y~~a~~~Gq~~aGv~~s~l~ii~~~~~~~----~~~~a~~yF~~a~~i~i~~ 76 (309)
T PF01733_consen 1 MISVALIGFANAVLQSSLFGLASLFPPKYTQAVMIGQGLAGVIVSLLRIITKASGSD----VKTSAFIYFIIAVLIVILC 76 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEEHhhhHHHhccHHHHHhcCCHHHHHHHHhhccHHHHHHHHHHHHHHHhhhc----cchhhhhHHHHHHHHHHHH
Confidence 567888999999999999999999999999999999999999999999999998654 7899999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHhhhhcCCCCccchhhhhccc-----Cccchh-hhhHHhhhhccHHHHHHHHHHHHHHHHHH
Q 036062 150 ILLYAFFFPKLPIVKYFRSKAASEGSKTVSADLAAAGIQ-----TKAAQA-EDEAKQYERLSNKQLFIQNFDYALDLFLI 223 (333)
Q Consensus 150 ~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~v~~~i~~~~~~i~l~ 223 (333)
+++|. .+.|+|++|+|.+++.+.++++.+++..+++++ .+...+ .+++.++...+++.++||+|+++++++++
T Consensus 77 ~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~i~~~ 155 (309)
T PF01733_consen 77 IILYF-ILPRSPFYRYYLEREAKGDERETEEELSSDGEEESESRSEGTFENSKPQEENVFISFWVVLKKIWPYALSIFLV 155 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHH-HhccChHHHHHHhhhcccchhhhhhhhhhhccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHH
Confidence 99999 999999999997765211111111111111110 000000 11112223346889999999999999999
Q ss_pred hhhhceeccceeeeccccccC--CchH-HHHHHHHHHHHHHhhhhhcccccccccCcchHHHHHHHHHHHHHHHHhhhh-
Q 036062 224 YVLTLSIFPGFLYENTGQHRL--GEWY-SLVLIASYNVWDLIARYIPLVKCVKLESRKGLMITILCRFLLVPAFYFTAK- 299 (333)
Q Consensus 224 f~vTl~vFPgi~~~~~~~~~~--~~w~-~~~~~~~fNlgD~iGR~l~~~~~~~~~~~~~l~~~~~~R~ifiplf~lc~~- 299 (333)
|++|+++|||+++.+++.+.+ ++|| |+++|++||+||++||.++++++++.+++|++++++++|++|||+|++||+
T Consensus 156 f~vTl~~FP~it~~v~s~~~~~~~~~f~pv~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~ 235 (309)
T PF01733_consen 156 FFVTLSVFPGITSAVQSSNNPDWSSYFVPVVLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQ 235 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhheeeeccceeeeeeccccCCCccHHHHHHHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999998887765332 3456 468999999999999999999888766899999999999999999999975
Q ss_pred ---------cCchhHHHHHHHHHhhhcchhhhhhhcccCCCCC
Q 036062 300 ---------YGDQGWMIFLTSFLGLTNGYLTVCVMTVAPKGYK 333 (333)
Q Consensus 300 ---------~~~d~~~~i~~~lfgltNGy~~t~~m~~~P~~~~ 333 (333)
++||+|++++|++||+||||++|++||+||++++
T Consensus 236 p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~ 278 (309)
T PF01733_consen 236 PRPRYLPVLFNSDAWFIILMLLFGFTNGYLSTLAMMYAPKSVS 278 (309)
T ss_dssp -------------------------------HHHH--------
T ss_pred cccccCCCcccchHHHHHHHHHHHHccchhhhceeeeCCCcCC
Confidence 4689999999999999999999999999999875
No 4
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=99.72 E-value=4.9e-16 Score=150.45 Aligned_cols=284 Identities=15% Similarity=0.066 Sum_probs=183.7
Q ss_pred ehhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccch
Q 036062 8 LTLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGI 87 (333)
Q Consensus 8 ~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~ 87 (333)
..++-.+|.++.-+.+.++.+|+|++.|+.....++.+.+++.+.- . ..+..++.+++.+.++++-|.++
T Consensus 64 Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~---~-------~v~~~l~Gv~las~ssg~GE~tf 133 (402)
T PF02487_consen 64 VLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFS---P-------SVWVRLLGVVLASLSSGLGEVTF 133 (402)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeec---c-------chhHHHHHHHHHhhhhhhhHHHH
Confidence 5677888999999999999999999999998888876666553221 1 23578899999999999999999
Q ss_pred hhhcccCChHHHHHHHhhhhhhhHHHHHHHHHHHhhccCCccccchhhhHHhHHHHHHHHHHHHHHHHHcCCChHHHHHH
Q 036062 88 VGDLSFMYPEFMQSFFAGLAASGALTSGLRLLTKAAFEKSHDGLRKGVMLFLAICTSFEFVCILLYAFFFPKLPIVKYFR 167 (333)
Q Consensus 88 ~gla~~~p~~~~~a~~~Gqg~aGi~~s~~~ii~~~~~~~~~~~~~~s~~iyF~~a~~~~~~~~~~~~~~l~k~~~~~~~~ 167 (333)
.++++.+|++-..++.+|+|.||++.++........ +-+++.. +.+...+-++-++.|+ .+.+.|..++-
T Consensus 134 L~lt~~y~~~~l~~wssGTG~aGl~Ga~~y~~lT~~----g~s~~~t----ll~~~~lp~~~~~~~f-~~L~~~~~~~~- 203 (402)
T PF02487_consen 134 LSLTHFYGKSSLSAWSSGTGGAGLVGALYYLGLTTL----GLSPRTT----LLIMLVLPAIFLLSYF-FLLPSPPTNRP- 203 (402)
T ss_pred HHHHHhcCccccccccCCcChhhHHHHHHHHHHHHh----CcCHHHH----HHHHHHHHHHHHHHHH-HhhccccccCC-
Confidence 999999999999999999999999999998866542 2223332 2222233333333444 33343321110
Q ss_pred HhhhhcCCCCccchhhhhcccCccchhhhhHHhhhhccHHHHHHHHHHHHHHHHHHhhhhceeccceeeeccc-ccc-CC
Q 036062 168 SKAASEGSKTVSADLAAAGIQTKAAQAEDEAKQYERLSNKQLFIQNFDYALDLFLIYVLTLSIFPGFLYENTG-QHR-LG 245 (333)
Q Consensus 168 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~i~l~f~vTl~vFPgi~~~~~~-~~~-~~ 245 (333)
.+..+.+.+.++|..++ +.+.+ ++++..+.....-++..|+..++++.++++|+..+.+-+|+...... ... ..
T Consensus 204 -~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~ 279 (402)
T PF02487_consen 204 -YQESESEDEAEDDLLES--ETSES-KPDSSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSP 279 (402)
T ss_pred -CcccCCCCccccccccc--ccccc-cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCH
Confidence 00000001111111100 00000 00111111112234566777779999999999999998888633211 111 11
Q ss_pred chHHHHHHHHHHHHHHhhhhhcccccccccCcchHHHHHHHHHHHHHHHHhhhhc---CchhHHHHHHHHHhhhcchh
Q 036062 246 EWYSLVLIASYNVWDLIARYIPLVKCVKLESRKGLMITILCRFLLVPAFYFTAKY---GDQGWMIFLTSFLGLTNGYL 320 (333)
Q Consensus 246 ~w~~~~~~~~fNlgD~iGR~l~~~~~~~~~~~~~l~~~~~~R~ifiplf~lc~~~---~~d~~~~i~~~lfgltNGy~ 320 (333)
.-+-+..-++|++|.+++|+...+.+. |++|+++++.++..-++++-..+ ++.|..+++++.-|+-.|-.
T Consensus 280 r~~Y~~Y~~~YQ~GVFISRSS~~~~ri-----r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~ 352 (402)
T PF02487_consen 280 RDQYRWYQLLYQLGVFISRSSLPFFRI-----RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGAS 352 (402)
T ss_pred HHHHHHHHHHHHHHHhhhhcceeeeeh-----hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHH
Confidence 123456688999999999999877433 67899999999988887776653 46666677788888877743
No 5
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=99.06 E-value=5.2e-10 Score=103.63 Aligned_cols=278 Identities=14% Similarity=0.101 Sum_probs=173.4
Q ss_pred eehhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccc
Q 036062 7 ALTLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGG 86 (333)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s 86 (333)
..-++-++|.++..+...++.+|+++..|+-...........+ +..+. .-+..|+.+.+..+++|+-+-+
T Consensus 66 ~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~l---Vafs~-------s~~~sL~GV~~aSissGlGEiT 135 (409)
T KOG3880|consen 66 AVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFL---VAFSN-------SVPMSLLGVVFASISSGLGEIT 135 (409)
T ss_pred hhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEE---EEecc-------chhHHHhhhhhhhhcCCcceee
Confidence 3456778999999999999999999999987655554433333 22221 1235788899999999999999
Q ss_pred hhhhcccCChHHHHHHHhhhhhhhHHHHHHHHHHHhhccCCccccchhhhHHhHHHHHHHHHHHHHHHHHcCCChHHHHH
Q 036062 87 IVGDLSFMYPEFMQSFFAGLAASGALTSGLRLLTKAAFEKSHDGLRKGVMLFLAICTSFEFVCILLYAFFFPKLPIVKYF 166 (333)
Q Consensus 87 ~~gla~~~p~~~~~a~~~Gqg~aGi~~s~~~ii~~~~~~~~~~~~~~s~~iyF~~a~~~~~~~~~~~~~~l~k~~~~~~~ 166 (333)
+.++++.+|+.-...+.+|+|.||++.+.......-.+ +-+++..-++.-.+.+++ .++|+ .+.|.|...+-
T Consensus 136 FL~lss~Y~~~~i~~WSSGTGgAGliGa~SYa~lT~~~---~~spk~Tlli~l~lP~lf----a~~yf-~lL~~pes~~~ 207 (409)
T KOG3880|consen 136 FLALSSRYPSIVIAGWSSGTGGAGLIGASSYAFLTSWA---NLSPKSTLLIMLFLPALF----AFAYF-FLLKSPESVYS 207 (409)
T ss_pred hhhhhccCCCceeccccCCCCcchhhhhhHHHHHhhhc---CCChhhHHHHHHHHHHHH----HHHHH-heeCCCccccC
Confidence 99999999999999999999999999999887544322 233555555555555443 34566 56666654442
Q ss_pred HHhhhhcCCCCccchhhhhcccCccchhhh--hHHhhhhccHHHHHHHHHHHHHHHHHHhhhhceeccceeeecc--ccc
Q 036062 167 RSKAASEGSKTVSADLAAAGIQTKAAQAED--EAKQYERLSNKQLFIQNFDYALDLFLIYVLTLSIFPGFLYENT--GQH 242 (333)
Q Consensus 167 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~i~~~~~~i~l~f~vTl~vFPgi~~~~~--~~~ 242 (333)
...+ ++.+...+++...+.. |++ .+........+..+|...++++-+++||+-.+.+--|++-... ..+
T Consensus 208 ptl~-~~~~~~~~~~~~~~a~------e~~sv~s~~~~~~e~~~~i~pll~~MvPL~~VY~~EY~INQGl~ell~F~c~~ 280 (409)
T KOG3880|consen 208 PTLQ-PSTEIIPSQYLPFEAA------EEKSVPSRRLGLKETLKRIKPLLKYMVPLALVYFAEYFINQGLAELLLFPCSH 280 (409)
T ss_pred CCcC-ccceeccCCCCccccc------ccccCchhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhEEecccc
Confidence 1100 0000000111000000 011 0001111112222333334778888888877776666542211 011
Q ss_pred c-----C--CchHHHHHHHHHHHHHHhhhhhcccccccccCcchHHHHHHHHHHHHHHHHhhhh--cC-chhHHHHHHHH
Q 036062 243 R-----L--GEWYSLVLIASYNVWDLIARYIPLVKCVKLESRKGLMITILCRFLLVPAFYFTAK--YG-DQGWMIFLTSF 312 (333)
Q Consensus 243 ~-----~--~~w~~~~~~~~fNlgD~iGR~l~~~~~~~~~~~~~l~~~~~~R~ifiplf~lc~~--~~-~d~~~~i~~~l 312 (333)
. + -.|+. ..|++|-|+.|+.-++.+.| .+|.+.+++++-.-.|++-+. +. +.|.-+++++.
T Consensus 281 g~sls~~sqYRwyq----vlYQlGVFiSRSS~~~~~~p-----~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~ 351 (409)
T KOG3880|consen 281 GFSLSKDSQYRWYQ----VLYQLGVFISRSSINLFTMP-----YLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILF 351 (409)
T ss_pred CCccchhhcchhhh----eeeeeeEEEEeccceEEech-----HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1 1 13665 57999999999999987653 688999999998888888774 34 45545666777
Q ss_pred Hhhhcc
Q 036062 313 LGLTNG 318 (333)
Q Consensus 313 fgltNG 318 (333)
=|+-.|
T Consensus 352 EGLlGG 357 (409)
T KOG3880|consen 352 EGLLGG 357 (409)
T ss_pred HhhcCc
Confidence 777666
No 6
>KOG4255 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=2e-06 Score=80.42 Aligned_cols=155 Identities=18% Similarity=0.183 Sum_probs=107.1
Q ss_pred CCCceehhhhhHHHHHHHHHHHh-hhccCC-CccchHHHHHHH-HHHHHHHHHH--hhhc-cCCCCcchHHHHHHHHHHH
Q 036062 3 HPTRALTLVYQPFALGTMAILAY-NESKID-TRKRNITGYIIF-FASTLALLLL--DLAT-SGEGGLGPFLGVCVFVALF 76 (333)
Q Consensus 3 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~-~~~Ri~~~l~~~-~~~~~~~~~~--~~~~-~~~~~~~~f~~~l~~v~~~ 76 (333)
+..+|.++.-|+.|+..+++.+. .+.|.. ...-++.-+... .+.++++++. |+++ .+..+.. -.+.+.+.+
T Consensus 46 slpsyl~vvVqla~lgpLi~tllhk~~~~~i~~VPiif~ll~~a~v~~l~laflW~~ts~V~g~~hS~---afl~L~F~L 122 (439)
T KOG4255|consen 46 SLPSYLSVVVQLANLGPLIVTLLHKGAPGTIPTVPIIFVLLLLACVCQLGLAFLWHDTSPVFGALHSW---AFLSLLFGL 122 (439)
T ss_pred ccchHHHHHHHHHcchhHHHHHHHhhCCCcCCCCCchhHHHHHHHHHHHHHHHHHhcchhhhcCcchH---HHHHHHHHH
Confidence 45678899999999988766443 222211 122333333333 4556666666 2222 1222333 345566777
Q ss_pred hhhhHhhccchhhhcccCChHHHHHHHhhhhhhhHHHHHHHHHHHhhc---c-C----CccccchhhhHHhHHHHHHHHH
Q 036062 77 GVADAHVRGGIVGDLSFMYPEFMQSFFAGLAASGALTSGLRLLTKAAF---E-K----SHDGLRKGVMLFLAICTSFEFV 148 (333)
Q Consensus 77 g~~~~~~q~s~~gla~~~p~~~~~a~~~Gqg~aGi~~s~~~ii~~~~~---~-~----~~~~~~~s~~iyF~~a~~~~~~ 148 (333)
++.++...-.++-..+.+||.|.+++..|||++|++++++.++-.... + + .+-.++.+..+||.+-..+...
T Consensus 123 Aivdc~SnVtFLPFMs~lpp~fL~afFvG~GLSaLlPsllaLaQGtg~~~C~~n~t~~r~fP~rFs~s~FFl~l~~~~~~ 202 (439)
T KOG4255|consen 123 AIVDCTSNVTFLPFMSQLPPAFLNAFFVGMGLSALLPSLLALAQGTGRLECDLNGTPGRPFPPRFSVSTFFLALFAFTCA 202 (439)
T ss_pred HHHHhhccchhhhhhhhCChHHHHHHHHhccHHHHHHHHHHHHccCCceeecCCCCCCCCCCCCccHHHHHHHHHHHHHH
Confidence 788888888999999999999999999999999999999998754321 0 1 1123578999999999999999
Q ss_pred HHHHHHHHcCCCh
Q 036062 149 CILLYAFFFPKLP 161 (333)
Q Consensus 149 ~~~~~~~~l~k~~ 161 (333)
|++.|+ .+.|++
T Consensus 203 alaAF~-vL~r~~ 214 (439)
T KOG4255|consen 203 ALAAFF-VLYRLG 214 (439)
T ss_pred HHHHHH-HHHhcC
Confidence 999998 777764
No 7
>TIGR00898 2A0119 cation transport protein.
Probab=97.68 E-value=0.0084 Score=59.89 Aligned_cols=81 Identities=11% Similarity=0.021 Sum_probs=43.1
Q ss_pred hhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchh
Q 036062 9 TLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIV 88 (333)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~ 88 (333)
...+.+..++...+.-.+.+|...|.=+..+.++..+..++... .+ .++..++.-++.|++.+.......
T Consensus 133 ~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~---~~-------~~~~~~~~r~l~G~~~~~~~~~~~ 202 (505)
T TIGR00898 133 QSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAF---SP-------NYTVFLVFRLLVGMGIGGIWVQAV 202 (505)
T ss_pred HHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH---cc-------cHHHHHHHHHHHHhhccchHHHHH
Confidence 34455555555566666667765443333343333333333221 11 244556666778888877666666
Q ss_pred hhccc-CChHHH
Q 036062 89 GDLSF-MYPEFM 99 (333)
Q Consensus 89 gla~~-~p~~~~ 99 (333)
.+.+. +|++.-
T Consensus 203 ~~~~e~~~~~~r 214 (505)
T TIGR00898 203 VLNTEFLPKKQR 214 (505)
T ss_pred HHhheecChhhh
Confidence 66554 666543
No 8
>TIGR00893 2A0114 d-galactonate transporter.
Probab=97.67 E-value=0.0057 Score=57.62 Aligned_cols=100 Identities=13% Similarity=0.056 Sum_probs=58.5
Q ss_pred eehhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccc
Q 036062 7 ALTLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGG 86 (333)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s 86 (333)
++..++.++..+...+.-.+.+|...|.-+..+.++..+...+....+ .++..++.-.+.|++.+.....
T Consensus 33 ~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~g~~~~~~~~~ 102 (399)
T TIGR00893 33 YVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG----------AYVSLYILRVLLGAAEAPFFPG 102 (399)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc----------CHHHHHHHHHHHHHHHHhhhhH
Confidence 344456666666777777778888766555556555544444433322 2344555667778888877777
Q ss_pred hhhhccc-CChHH----HHHHHhhhhhhhHHHHHH
Q 036062 87 IVGDLSF-MYPEF----MQSFFAGLAASGALTSGL 116 (333)
Q Consensus 87 ~~gla~~-~p~~~----~~a~~~Gqg~aGi~~s~~ 116 (333)
...+.+. +|++. +.....++++++++...+
T Consensus 103 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 137 (399)
T TIGR00893 103 IILIVASWFPASERATAVSIFNSAQGLGGIIGGPL 137 (399)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 7776665 56543 333445555665555443
No 9
>TIGR00895 2A0115 benzoate transport.
Probab=97.56 E-value=0.0017 Score=61.67 Aligned_cols=93 Identities=14% Similarity=0.061 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhhc
Q 036062 12 YQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGDL 91 (333)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gla 91 (333)
+.+...+...+.-.+.+|...|.-+..+..+..+..++.... . .+...++...+.|++.+........+.
T Consensus 61 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~g~~~~~~~~~~~~~~ 130 (398)
T TIGR00895 61 GLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA---T-------NVTQLLILRFLAGLGLGGLMPNLNALV 130 (398)
T ss_pred HHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc---c-------chHHHHHHHHHHhcccccchhhHHHHH
Confidence 344444555555666777765544444544443333332221 1 133445566677888777777777766
Q ss_pred cc-CChHH----HHHHHhhhhhhhHHHH
Q 036062 92 SF-MYPEF----MQSFFAGLAASGALTS 114 (333)
Q Consensus 92 ~~-~p~~~----~~a~~~Gqg~aGi~~s 114 (333)
+. +|++. ......+.++++.+..
T Consensus 131 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 158 (398)
T TIGR00895 131 SEYAPKRFRGTAVGLMFCGYPIGAAVGG 158 (398)
T ss_pred HHHcCHHhhchhHhhHhhHHHHHHHHHH
Confidence 65 55443 2233344444444443
No 10
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=97.48 E-value=0.0028 Score=59.72 Aligned_cols=96 Identities=9% Similarity=-0.025 Sum_probs=57.5
Q ss_pred hhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchh
Q 036062 9 TLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIV 88 (333)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~ 88 (333)
...+.+...+.....-.+.+|.+.|.-+..+..+..+..++....+ .++..++.-.+.|++.+.......
T Consensus 36 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~g~~~~~~~~~~~ 105 (379)
T TIGR00881 36 LSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST----------SLWVMAALWALNGIFQGMGWPPCG 105 (379)
T ss_pred HHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh----------hHHHHHHHHHHHHhhccccCCchH
Confidence 3445555556666666777888777666666666555554433332 134455666677888887777777
Q ss_pred hhccc-CChHH----HHHHHhhhhhhhHHHH
Q 036062 89 GDLSF-MYPEF----MQSFFAGLAASGALTS 114 (333)
Q Consensus 89 gla~~-~p~~~----~~a~~~Gqg~aGi~~s 114 (333)
++.+. +|++. ......++++++++..
T Consensus 106 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 136 (379)
T TIGR00881 106 RTVTKWFSRSERGTWVSFWNCSHNVGGGLLP 136 (379)
T ss_pred HHHHHhcCHhhheeeEeehhccchhHHHHHH
Confidence 66554 55543 2334456666666665
No 11
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=97.17 E-value=0.04 Score=51.37 Aligned_cols=97 Identities=16% Similarity=0.155 Sum_probs=54.9
Q ss_pred eehhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccc
Q 036062 7 ALTLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGG 86 (333)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s 86 (333)
++..++.++..+.....-.+.+|.+.|.=+..+.++..+...+..+ .+ .. +..++..++.|++.+.....
T Consensus 36 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~---~~------~~-~~~~~~~~l~g~~~~~~~~~ 105 (352)
T PF07690_consen 36 LLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF---AS------NF-WLLLIARFLLGIGSGFFSPA 105 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---HC------CH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh---hh------hH-HHHhhhcccccccccccccc
Confidence 3445566677777777777888876555444455554444222221 11 12 25677777888888888888
Q ss_pred hhhhccc-CCh-HH---HHHHHhhhhhhhHHH
Q 036062 87 IVGDLSF-MYP-EF---MQSFFAGLAASGALT 113 (333)
Q Consensus 87 ~~gla~~-~p~-~~---~~a~~~Gqg~aGi~~ 113 (333)
...+.+. +|+ +. ......+.+++.++.
T Consensus 106 ~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g 137 (352)
T PF07690_consen 106 SNALIADWFPPEERGRAFGILSAGFSLGSILG 137 (352)
T ss_dssp HHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhhhhhccccccchhhhhhhcc
Confidence 8776665 665 23 333334444444443
No 12
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=97.12 E-value=0.13 Score=48.06 Aligned_cols=102 Identities=16% Similarity=-0.021 Sum_probs=56.2
Q ss_pred hhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchh
Q 036062 9 TLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIV 88 (333)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~ 88 (333)
..++.++..+.....-.+.+|...|.-+..+.++..+...+....+... ...++..++...+.|++.+.......
T Consensus 40 ~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~g~~~~~~~~~~~ 114 (365)
T TIGR00900 40 ALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLG-----GLNIWQVYVLAGILAIAQAFFTPAYQ 114 (365)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcC-----CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555656667777655544445554444444444443211 12345556667778888888888777
Q ss_pred hhccc-CChHH----HHHHHhhhhhhhHHHHH
Q 036062 89 GDLSF-MYPEF----MQSFFAGLAASGALTSG 115 (333)
Q Consensus 89 gla~~-~p~~~----~~a~~~Gqg~aGi~~s~ 115 (333)
++.+. .|++. ......+.++++++...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 146 (365)
T TIGR00900 115 AMLPDLVPEEQLTQANSLSQAVRSLFYIVGPG 146 (365)
T ss_pred HHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 77766 45432 22334555555555544
No 13
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.11 E-value=0.065 Score=50.61 Aligned_cols=84 Identities=13% Similarity=0.042 Sum_probs=46.5
Q ss_pred ceehhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhcc
Q 036062 6 RALTLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRG 85 (333)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~ 85 (333)
+++...+.+...+.....-.+.+|...|.-+..+.++..+..+.....+. .++..++...+.|++.+....
T Consensus 40 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~---------~~~~~~~~~~~~g~~~~~~~~ 110 (366)
T TIGR00886 40 GNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQ---------SYSVLLLLRLFIGIAGGSFAS 110 (366)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhh---------hHHHHHHHHHHHHHhchhhHh
Confidence 34455566677777777777888887776666666666555544333320 123344444555655554433
Q ss_pred chhhhcccCChHH
Q 036062 86 GIVGDLSFMYPEF 98 (333)
Q Consensus 86 s~~gla~~~p~~~ 98 (333)
..--++..+|++.
T Consensus 111 ~~~~~~~~~~~~~ 123 (366)
T TIGR00886 111 CMPWISFFFPKKI 123 (366)
T ss_pred HHHHHHHhcCHhh
Confidence 3333344566553
No 14
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=97.07 E-value=0.05 Score=51.40 Aligned_cols=95 Identities=15% Similarity=0.035 Sum_probs=47.8
Q ss_pred HHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhhccc-CCh---
Q 036062 21 AILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGDLSF-MYP--- 96 (333)
Q Consensus 21 ~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gla~~-~p~--- 96 (333)
.+.-.+.+|...|.-+..+.++..+...+....+... ..........++.-.+.|++.+........+.+. +|+
T Consensus 53 ~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r 130 (394)
T TIGR00883 53 IVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYA--TIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKR 130 (394)
T ss_pred HHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChh--hhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccc
Confidence 3444556777665555555555555444443332211 0001112234445566777777666666665555 443
Q ss_pred -HHHHHHHhhhhhhhHHHHHHH
Q 036062 97 -EFMQSFFAGLAASGALTSGLR 117 (333)
Q Consensus 97 -~~~~a~~~Gqg~aGi~~s~~~ 117 (333)
++......|.+++.++..++-
T Consensus 131 ~~~~~~~~~~~~~G~~i~~~~~ 152 (394)
T TIGR00883 131 GFYGSFQQVGAPVGLLLAALTV 152 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 244555566666666555443
No 15
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=97.06 E-value=0.18 Score=48.06 Aligned_cols=97 Identities=11% Similarity=0.076 Sum_probs=52.8
Q ss_pred hhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchh
Q 036062 9 TLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIV 88 (333)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~ 88 (333)
...+.+...+.....-.+.+|...|.-+..+.++..+..+.....+ .+...++.-++.|++.+.......
T Consensus 53 ~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~----------~~~~l~~~~~l~G~~~~~~~~~~~ 122 (405)
T TIGR00891 53 ISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAP----------GYITMFIARLVIGIGMGGEYGSSA 122 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc----------cHHHHHHHHHHHHhhhhhhhHHHH
Confidence 3345555566666666677777655544445444433333322211 244456667777887777776666
Q ss_pred hhcc-cCChHH----HHHHHhhhhhhhHHHHH
Q 036062 89 GDLS-FMYPEF----MQSFFAGLAASGALTSG 115 (333)
Q Consensus 89 gla~-~~p~~~----~~a~~~Gqg~aGi~~s~ 115 (333)
++.. .+|++. ......|.++++++...
T Consensus 123 ~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 154 (405)
T TIGR00891 123 AYVIESWPKHLRNKASGLLISGYAVGAVVAAQ 154 (405)
T ss_pred HHHHHhCChhhhhHHHHHHHHHHHHHHHHHHH
Confidence 6544 456553 23344555555555544
No 16
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=97.06 E-value=0.088 Score=49.96 Aligned_cols=80 Identities=14% Similarity=-0.026 Sum_probs=44.0
Q ss_pred hhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchh
Q 036062 9 TLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIV 88 (333)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~ 88 (333)
...+.+...+...+.-.+.+|.+.|.-+..+.++..+..+.....+ .++..++...+.|++.+.......
T Consensus 46 ~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~g~~~~~~~~~~~ 115 (385)
T TIGR00710 46 LTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSN----------NIETLLVLRFVQAFGASAGSVISQ 115 (385)
T ss_pred HHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc----------cHHHHHHHHHHHHcchhHHHHHHH
Confidence 3344555556666666677777655444444444444333322221 133445556677877777777777
Q ss_pred hhccc-CChHH
Q 036062 89 GDLSF-MYPEF 98 (333)
Q Consensus 89 gla~~-~p~~~ 98 (333)
++... +|++.
T Consensus 116 ~~~~~~~~~~~ 126 (385)
T TIGR00710 116 ALVRDIYPGEE 126 (385)
T ss_pred HHHHHhcCcHH
Confidence 76665 56443
No 17
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=97.05 E-value=0.071 Score=53.40 Aligned_cols=96 Identities=14% Similarity=-0.030 Sum_probs=48.8
Q ss_pred HHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhhccc-CChH-
Q 036062 20 MAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGDLSF-MYPE- 97 (333)
Q Consensus 20 ~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gla~~-~p~~- 97 (333)
.++.-.+.+|+..|.-+..+.+++.+..++..+.+.... -+...+...++.=++.|++.+....+...+.+. +|++
T Consensus 74 ~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~--~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~ 151 (490)
T PRK10642 74 GLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYAT--IGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK 151 (490)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHH--HHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC
Confidence 344445677776666566666666655555444332110 001111234455566777777666666665554 5643
Q ss_pred ---HHHHHHhhhhhhhHHHHHHH
Q 036062 98 ---FMQSFFAGLAASGALTSGLR 117 (333)
Q Consensus 98 ---~~~a~~~Gqg~aGi~~s~~~ 117 (333)
+...+..|..++.++...+.
T Consensus 152 Rg~~~~~~~~~~~~G~~lg~~~~ 174 (490)
T PRK10642 152 RGFMGSWLDFGSIAGFVLGAGVV 174 (490)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555544433
No 18
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=97.03 E-value=0.13 Score=51.74 Aligned_cols=151 Identities=13% Similarity=0.092 Sum_probs=76.3
Q ss_pred eehhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccc
Q 036062 7 ALTLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGG 86 (333)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s 86 (333)
++...+.+...+...+.-.+.+|+..|.=+..+.++..+..++..... .. .....+...++.-++.|++.+.....
T Consensus 60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~---~~-~~~~~~~~~~~~r~l~G~~~g~~~~~ 135 (502)
T TIGR00887 60 AVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSP---GS-SPKSVMATLCFWRFWLGVGIGGDYPL 135 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcc---Cc-ccchHHHHHHHHHHHHHHHHhhhhHH
Confidence 344555566666667777777777555444445555444433322221 11 01122455666777788888877666
Q ss_pred hhhhcc-cCChHHHHHH----HhhhhhhhHHHHHHHHHHHhhccC-----Ccc---------ccchhhhHHhHHHHHHHH
Q 036062 87 IVGDLS-FMYPEFMQSF----FAGLAASGALTSGLRLLTKAAFEK-----SHD---------GLRKGVMLFLAICTSFEF 147 (333)
Q Consensus 87 ~~gla~-~~p~~~~~a~----~~Gqg~aGi~~s~~~ii~~~~~~~-----~~~---------~~~~s~~iyF~~a~~~~~ 147 (333)
...+.+ .+|++.-... ..++.+++++...+..+......+ ++. ....+-...|.++++..+
T Consensus 136 ~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~ 215 (502)
T TIGR00887 136 SAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPAL 215 (502)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHH
Confidence 666666 4676653332 233444444444433322211111 000 011234455566666555
Q ss_pred HHHHHHHHHcCCChH
Q 036062 148 VCILLYAFFFPKLPI 162 (333)
Q Consensus 148 ~~~~~~~~~l~k~~~ 162 (333)
+.++... .++-+|.
T Consensus 216 i~~~~~~-~lpESpr 229 (502)
T TIGR00887 216 LALYFRL-TIPETPR 229 (502)
T ss_pred HHHHHHH-hCCCCHH
Confidence 5555555 6777775
No 19
>PRK11663 regulatory protein UhpC; Provisional
Probab=97.02 E-value=0.13 Score=50.65 Aligned_cols=97 Identities=7% Similarity=-0.092 Sum_probs=47.6
Q ss_pred hhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchh
Q 036062 9 TLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIV 88 (333)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~ 88 (333)
...+.++..+.....-.+.+|...|.=+..+.++..+.+++....+ .++..++.-++.|++.+.......
T Consensus 64 ~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----------~~~~l~~~~~l~g~~~g~~~~~~~ 133 (434)
T PRK11663 64 ATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSS----------SLWAFALLWVLNAFFQGWGWPVCA 133 (434)
T ss_pred HHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHHccchHHH
Confidence 3445555556666666677777665433334444433333322221 122233333445666655545445
Q ss_pred hh-cccCChHH----HHHHHhhhhhhhHHHHH
Q 036062 89 GD-LSFMYPEF----MQSFFAGLAASGALTSG 115 (333)
Q Consensus 89 gl-a~~~p~~~----~~a~~~Gqg~aGi~~s~ 115 (333)
.+ +..+|++. +..+..++++++++...
T Consensus 134 ~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~ 165 (434)
T PRK11663 134 KLLTAWYSRTERGGWWAIWNTAHNVGGALIPL 165 (434)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 34467654 23334566666665543
No 20
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=96.87 E-value=0.18 Score=48.54 Aligned_cols=97 Identities=19% Similarity=0.096 Sum_probs=52.1
Q ss_pred hhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhh
Q 036062 10 LVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVG 89 (333)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~g 89 (333)
..+.+...+.....-.+.+|...|.-+..+..+..+..+..... . .+...++.-.+.|++.+.......+
T Consensus 57 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~~l~G~~~~~~~~~~~~ 126 (406)
T PRK11551 57 SAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQA---W-------DFPSLLVARLLTGVGLGGALPNLIA 126 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh---c-------cHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34455555566666777788776655555554443333322221 1 2344556667778877766655555
Q ss_pred hcc-cCChHHH----HHHHhhhhhhhHHHHHH
Q 036062 90 DLS-FMYPEFM----QSFFAGLAASGALTSGL 116 (333)
Q Consensus 90 la~-~~p~~~~----~a~~~Gqg~aGi~~s~~ 116 (333)
+.+ .+|++.- .....|..+++.+...+
T Consensus 127 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 158 (406)
T PRK11551 127 LTSEAVGPRLRGTAVSLMYCGVPFGGALASVI 158 (406)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544 4665432 22345555666655443
No 21
>PRK03699 putative transporter; Provisional
Probab=96.68 E-value=0.11 Score=50.12 Aligned_cols=72 Identities=13% Similarity=0.164 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhhhhhcccccccccCcchHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHHHHhhhcchhhhhhh
Q 036062 251 VLIASYNVWDLIARYIPLVKCVKLESRKGLMITILCRFLLVPAFYFTAKYGDQGWMIFLTSFLGLTNGYLTVCVM 325 (333)
Q Consensus 251 ~~~~~fNlgD~iGR~l~~~~~~~~~~~~~l~~~~~~R~ifiplf~lc~~~~~d~~~~i~~~lfgltNGy~~t~~m 325 (333)
....++.++..+||.+..+..-+..++|.+........+.+.++..+ ++..+..+..+++|+.+|-.-+..+
T Consensus 245 ~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~G~~~~~~~~~~~ 316 (394)
T PRK03699 245 NLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNT---DDPSHLLYAILGLGFFSSAIYTTII 316 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHc---CCchHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788889999887774333323344443444444433333222 3445555567778886654444333
No 22
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=96.59 E-value=0.16 Score=49.20 Aligned_cols=103 Identities=9% Similarity=0.021 Sum_probs=55.5
Q ss_pred ehhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccch
Q 036062 8 LTLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGI 87 (333)
Q Consensus 8 ~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~ 87 (333)
+...+.+...+...+.-.+.+|...|.-+..+..+..+..++....+. ...++..++.-.+.|++.+......
T Consensus 76 ~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~r~l~G~~~~~~~~~~ 148 (481)
T TIGR00879 76 VVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAF-------ALSVEMLIVGRVLLGIGVGIASALV 148 (481)
T ss_pred HHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc-------ccchHHHHHHHHHHHhhhhHHHhHH
Confidence 344455555566666666677766554444444444443333322221 1223456667777888888777766
Q ss_pred hhhccc-CChHHH----HHHHhhhhhhhHHHHHHH
Q 036062 88 VGDLSF-MYPEFM----QSFFAGLAASGALTSGLR 117 (333)
Q Consensus 88 ~gla~~-~p~~~~----~a~~~Gqg~aGi~~s~~~ 117 (333)
..+.+. +|++.- ..+..+.++++++..++.
T Consensus 149 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 149 PMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred HHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 665544 565542 233345555555555544
No 23
>PRK03545 putative arabinose transporter; Provisional
Probab=96.59 E-value=0.28 Score=47.25 Aligned_cols=95 Identities=18% Similarity=0.021 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhhc
Q 036062 12 YQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGDL 91 (333)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gla 91 (333)
+.+...+.....-.+.+|.+.|.-+..+..+..+.++.....+ .++..++.-.+.|.+.+.......++.
T Consensus 53 ~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----------~~~~l~~~r~~~G~~~~~~~~~~~~~i 122 (390)
T PRK03545 53 YAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAW----------NFTVLLISRIGIAFAHAIFWSITASLA 122 (390)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhc----------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455677888877666666665555444433221 133445555667777777766666665
Q ss_pred cc-CChH----HHHHHHhhhhhhhHHHHHH
Q 036062 92 SF-MYPE----FMQSFFAGLAASGALTSGL 116 (333)
Q Consensus 92 ~~-~p~~----~~~a~~~Gqg~aGi~~s~~ 116 (333)
+. .|++ .+..+..|.+++.++...+
T Consensus 123 ~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l 152 (390)
T PRK03545 123 IRVAPAGKKAQALSLLATGTALAMVLGLPL 152 (390)
T ss_pred HHhCChhhhhhHHHHHHHHHHHHHHHHhhH
Confidence 54 5643 4444566666666665443
No 24
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=96.56 E-value=0.53 Score=46.49 Aligned_cols=93 Identities=13% Similarity=-0.017 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhh-h
Q 036062 12 YQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVG-D 90 (333)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~g-l 90 (333)
+.++..+...+.-.+.+|+..|.=+..+.++..+..+.+.+.+... ..+...++.-.+.|++.+........ +
T Consensus 72 ~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~~l~gi~~g~~~~~~~~~~ 145 (452)
T PRK11273 72 ISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT------SSIAVMFVLLFLCGWFQGMGWPPCGRTM 145 (452)
T ss_pred HHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhccc------ccHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 4444455555666677777666544445555444444444332111 12334445555667666665543333 3
Q ss_pred cccCChHHHHH----HHhhhhhhh
Q 036062 91 LSFMYPEFMQS----FFAGLAASG 110 (333)
Q Consensus 91 a~~~p~~~~~a----~~~Gqg~aG 110 (333)
+..+|++..+- +..|.+++|
T Consensus 146 ~~~~~~~~r~~~~~~~~~~~~~g~ 169 (452)
T PRK11273 146 VHWWSQKERGGIVSVWNCAHNVGG 169 (452)
T ss_pred HHhCChHHHHHHHHHHHHHHHhhh
Confidence 44577664332 345555554
No 25
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=96.47 E-value=0.39 Score=47.06 Aligned_cols=99 Identities=4% Similarity=-0.148 Sum_probs=61.0
Q ss_pred hhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhh
Q 036062 10 LVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVG 89 (333)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~g 89 (333)
..+.+...+.....-.+.+|...|.-+..++.+..+...++...... ..|+..++..++.|++.+..|.+.-.
T Consensus 45 s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~-------~~~~~~l~~~~l~G~g~g~~~~~~~~ 117 (410)
T TIGR00885 45 SAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEI-------MNYTLFLVGLFILTAGLGFLETAANP 117 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhh-------ccHHHHHHHHHHHHhhHHHHHhhhhH
Confidence 34445555566667778899988887888888776655543322211 23556677778889999999987666
Q ss_pred hccc-CChHH----HHHHHhhhhhhhHHHHH
Q 036062 90 DLSF-MYPEF----MQSFFAGLAASGALTSG 115 (333)
Q Consensus 90 la~~-~p~~~----~~a~~~Gqg~aGi~~s~ 115 (333)
+... .|+++ ++....++++++.+...
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~ 148 (410)
T TIGR00885 118 YILVMGPESTATRRLNLAQSFNPFGSIIGMV 148 (410)
T ss_pred HHHHHCCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5543 34433 33333455555555544
No 26
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=96.44 E-value=0.18 Score=55.59 Aligned_cols=99 Identities=13% Similarity=-0.051 Sum_probs=55.4
Q ss_pred hhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhh
Q 036062 11 VYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGD 90 (333)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gl 90 (333)
++.++.+++..+.=.+..|+..|.-+..+..+.++..++........ .++..++..++.|++.++......++
T Consensus 55 ~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~~~~~~~~~~~ 127 (1146)
T PRK08633 55 LFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLG-------WFWLAFAVTFLLGAQSAIYSPAKYGI 127 (1146)
T ss_pred HHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHc-------cHHHHHHHHHHHHHHHHhhchHHHhh
Confidence 34444555555555566777666544545544433333333332211 25566677778899999888888777
Q ss_pred ccc-CChH----HHHHHHhhhhhhhHHHHHH
Q 036062 91 LSF-MYPE----FMQSFFAGLAASGALTSGL 116 (333)
Q Consensus 91 a~~-~p~~----~~~a~~~Gqg~aGi~~s~~ 116 (333)
.+. +|++ .+..+..+.+++.++..++
T Consensus 128 i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l 158 (1146)
T PRK08633 128 IPELVGKENLSRANGLLEAFTIVAILAGTAL 158 (1146)
T ss_pred hHHhcCcccchhhhhHHHHHHHHHHHHHHHH
Confidence 666 4533 3344445555555555443
No 27
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=96.43 E-value=0.5 Score=47.18 Aligned_cols=21 Identities=24% Similarity=0.157 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhhhhhcccc
Q 036062 250 LVLIASYNVWDLIARYIPLVK 270 (333)
Q Consensus 250 ~~~~~~fNlgD~iGR~l~~~~ 270 (333)
-.....++++..+||.+.++.
T Consensus 291 ~~~~~~~~~~~~ig~~~~G~l 311 (476)
T PLN00028 291 GAIAASFGLMNLFARPAGGYL 311 (476)
T ss_pred HHHHHHHHHHHHHHHhhhHHH
Confidence 345677888999999877763
No 28
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=96.40 E-value=0.3 Score=48.49 Aligned_cols=75 Identities=15% Similarity=0.085 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhhhhhccccccc-ccCcchHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHHHHhhhcchhhhhh
Q 036062 250 LVLIASYNVWDLIARYIPLVKCVK-LESRKGLMITILCRFLLVPAFYFTAKYGDQGWMIFLTSFLGLTNGYLTVCV 324 (333)
Q Consensus 250 ~~~~~~fNlgD~iGR~l~~~~~~~-~~~~~~l~~~~~~R~ifiplf~lc~~~~~d~~~~i~~~lfgltNGy~~t~~ 324 (333)
-....++.+++.++|.+..+...+ ..+++.......+-+.....++++...++.++.++..+++|+.+|-.....
T Consensus 279 g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~ 354 (455)
T TIGR00892 279 AFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALL 354 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHH
Confidence 345667889999988776653211 112222222222233333333344333455556667889999888665443
No 29
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=96.33 E-value=0.29 Score=48.56 Aligned_cols=104 Identities=12% Similarity=-0.021 Sum_probs=56.4
Q ss_pred ehhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccch
Q 036062 8 LTLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGI 87 (333)
Q Consensus 8 ~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~ 87 (333)
+..++.++..+.+...-.+.+|.+.|.-+..++++..+.+..+....... ...+...++.-++.|++.+..-...
T Consensus 69 ~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~ 143 (467)
T PRK09556 69 IGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSG-----SVSLGLMIALWALSGFFQSTGGPCS 143 (467)
T ss_pred HHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcc-----cchHHHHHHHHHHHHHHHhccchHH
Confidence 34445566666666666777888777666666666544444444332211 1124455555566777766555555
Q ss_pred hhhcc-cCChH----HHHHHHhhhhhhhHHHHHH
Q 036062 88 VGDLS-FMYPE----FMQSFFAGLAASGALTSGL 116 (333)
Q Consensus 88 ~gla~-~~p~~----~~~a~~~Gqg~aGi~~s~~ 116 (333)
..+.+ .+|++ .+..+..|.++++++..++
T Consensus 144 ~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i 177 (467)
T PRK09556 144 YSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGV 177 (467)
T ss_pred HHHHHHHcCccceeeeEEeeecccchhhhHHHHH
Confidence 45444 46654 2333445556666665444
No 30
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=96.22 E-value=0.33 Score=45.48 Aligned_cols=92 Identities=10% Similarity=0.014 Sum_probs=48.4
Q ss_pred hhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhh
Q 036062 11 VYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGD 90 (333)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gl 90 (333)
++.+...+.....-.+.+|...|.-+..+.++..+..+.....+ .++..++.-.+.|.+.+.........
T Consensus 46 ~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~g~~~~~~~~~~~~~ 115 (377)
T TIGR00890 46 LLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIAD----------SLAALYLTYGLASAGVGIAYGIALNT 115 (377)
T ss_pred HHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhHHHHHHHHhHHHH
Confidence 44555555556656667777766555556655554444433332 12334444457777777665555554
Q ss_pred ccc-CChH---HHHHHHhhhhhhhHH
Q 036062 91 LSF-MYPE---FMQSFFAGLAASGAL 112 (333)
Q Consensus 91 a~~-~p~~---~~~a~~~Gqg~aGi~ 112 (333)
... +|++ .+.....|.++++++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~g~~~ 141 (377)
T TIGR00890 116 AVKWFPDKRGLASGIIIGGYGLGSFI 141 (377)
T ss_pred HHHHcCcccHHHHHHHHHhcchhHhH
Confidence 443 4433 334444555555543
No 31
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=96.19 E-value=0.66 Score=45.57 Aligned_cols=100 Identities=11% Similarity=-0.046 Sum_probs=48.4
Q ss_pred hhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchh-
Q 036062 10 LVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIV- 88 (333)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~- 88 (333)
..+.+...+.....-.+.+|+..|.-+..+.++..+........+.. ...+....+..++.|++.+...+...
T Consensus 68 ~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~l~g~~~g~~~~~~~~ 141 (438)
T TIGR00712 68 SAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWA------TSSIAIMFVLLFLNGWFQGMGWPPCGR 141 (438)
T ss_pred HHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccc------cchHHHHHHHHHHHHHHhhcchHHHHH
Confidence 34444555555555566777775544444554544444433332211 11233344445556666655444322
Q ss_pred hhcccCChHH----HHHHHhhhhhhhHHHHH
Q 036062 89 GDLSFMYPEF----MQSFFAGLAASGALTSG 115 (333)
Q Consensus 89 gla~~~p~~~----~~a~~~Gqg~aGi~~s~ 115 (333)
.++..+|++. ++....+.+++|.+...
T Consensus 142 ~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~ 172 (438)
T TIGR00712 142 TMVHWWSQSERGTIVSIWNCAHNIGGGIPPL 172 (438)
T ss_pred HHHHhcCcccchhHHHHHHHHHHhHhHHHHH
Confidence 2334577543 33344566666666543
No 32
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=96.14 E-value=0.46 Score=47.89 Aligned_cols=143 Identities=13% Similarity=0.064 Sum_probs=68.7
Q ss_pred ehhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccch
Q 036062 8 LTLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGI 87 (333)
Q Consensus 8 ~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~ 87 (333)
...++-+..+++..+...+.+|...|.-+..+.++.....+.....-.. ..+-..++.=.+.|+.+++..+..
T Consensus 65 ~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~-------~~~e~li~GR~i~Gl~~gl~~~~~ 137 (485)
T KOG0569|consen 65 IVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSA-------PSFEMLILGRLIVGLACGLSTGLV 137 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHhHHHHHHH
Confidence 3445666666777777777777666643333333322222221111111 123345555566677777666655
Q ss_pred hhhcccCChHHHHHHH-hhhhhhhHHHHHHH-HHHH-hhccCCccccchhhhHHhHHHHHHHHHHHHHHHHHcCCChHH
Q 036062 88 VGDLSFMYPEFMQSFF-AGLAASGALTSGLR-LLTK-AAFEKSHDGLRKGVMLFLAICTSFEFVCILLYAFFFPKLPIV 163 (333)
Q Consensus 88 ~gla~~~p~~~~~a~~-~Gqg~aGi~~s~~~-ii~~-~~~~~~~~~~~~s~~iyF~~a~~~~~~~~~~~~~~l~k~~~~ 163 (333)
-=+-+...|+...+.+ .=..++..++.++- .+.. -..++ +..--.-++...+..++.++... +++.+|.+
T Consensus 138 pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt-----~~~W~~l~~~~~i~~~~~l~~l~-~~PESPk~ 210 (485)
T KOG0569|consen 138 PMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGT-----EDLWPYLLAFPLIPALLQLALLP-FLPESPKY 210 (485)
T ss_pred HHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCC-----CcchHHHHHHHHHHHHHHHHHHh-cCCCCcch
Confidence 5555555565555333 22333333333322 1111 11111 12222334555555566666666 78888864
No 33
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=96.05 E-value=0.72 Score=43.52 Aligned_cols=23 Identities=17% Similarity=0.065 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHhhhcchhhhhhh
Q 036062 303 QGWMIFLTSFLGLTNGYLTVCVM 325 (333)
Q Consensus 303 d~~~~i~~~lfgltNGy~~t~~m 325 (333)
.+...+...+.|+..|......+
T Consensus 288 ~~~~~~~~~~~g~~~g~~~~~~~ 310 (375)
T TIGR00899 288 LWALLMLQLLNAIFIGILAGIGM 310 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344456677777776554444
No 34
>PRK10489 enterobactin exporter EntS; Provisional
Probab=95.98 E-value=1.4 Score=42.65 Aligned_cols=101 Identities=7% Similarity=-0.025 Sum_probs=50.8
Q ss_pred hhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhh
Q 036062 10 LVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVG 89 (333)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~g 89 (333)
..+.++..+...+.-.+.+|.+.|.-+..+..+..+....+....... ...++..++...+.|++.+.......+
T Consensus 59 ~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~~~~~~~~~ 133 (417)
T PRK10489 59 TLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLP-----EPSLLAIYLLGLWDGFFGSLGVTALLA 133 (417)
T ss_pred HHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcC-----CCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555566666677787766655555554433333322221111 112344555666667777766555555
Q ss_pred hcc-cCChHHHH----HHHhhhhhhhHHHHH
Q 036062 90 DLS-FMYPEFMQ----SFFAGLAASGALTSG 115 (333)
Q Consensus 90 la~-~~p~~~~~----a~~~Gqg~aGi~~s~ 115 (333)
+.. ..|++..+ ....+.++++++...
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 164 (417)
T PRK10489 134 ATPALVGRENLMQAGAITMLTVRLGSVISPA 164 (417)
T ss_pred hhhhccCHHHHHHHHHHHHHHHhHHHHhHHH
Confidence 444 45655432 222344455444433
No 35
>PRK09952 shikimate transporter; Provisional
Probab=95.95 E-value=0.74 Score=45.35 Aligned_cols=92 Identities=14% Similarity=0.035 Sum_probs=46.1
Q ss_pred HHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhhccc-CChHH---
Q 036062 23 LAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGDLSF-MYPEF--- 98 (333)
Q Consensus 23 ~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gla~~-~p~~~--- 98 (333)
.-.+.+|...|.-+..+..+..+.+++..+.+.... .+...+...++.=.+.|++.+....+...+.+. +|++.
T Consensus 84 ~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~ 161 (438)
T PRK09952 84 FGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFST--IGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAF 161 (438)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHH--HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcH
Confidence 344566766555555555555555554444332110 001112234444556677666554444444444 66543
Q ss_pred -HHHHHhhhhhhhHHHHHH
Q 036062 99 -MQSFFAGLAASGALTSGL 116 (333)
Q Consensus 99 -~~a~~~Gqg~aGi~~s~~ 116 (333)
......|.+++.++...+
T Consensus 162 ~~~~~~~g~~~G~~l~~~~ 180 (438)
T PRK09952 162 YSSGVQVGYGVGLLLSTGL 180 (438)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 555667777776666543
No 36
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=95.92 E-value=0.32 Score=45.85 Aligned_cols=86 Identities=6% Similarity=-0.068 Sum_probs=51.5
Q ss_pred chHHHHHHHHHHHhhhhHhhccchhhhcccC-Ch----HHHHHHHhhhhhhhHHHHHHHHHHHhhccC---Ccc------
Q 036062 64 GPFLGVCVFVALFGVADAHVRGGIVGDLSFM-YP----EFMQSFFAGLAASGALTSGLRLLTKAAFEK---SHD------ 129 (333)
Q Consensus 64 ~~f~~~l~~v~~~g~~~~~~q~s~~gla~~~-p~----~~~~a~~~Gqg~aGi~~s~~~ii~~~~~~~---~~~------ 129 (333)
..|...++..++.|.+.+++|.+.=.+.+.. |+ +.++-...-+|++.++.-+ +....... +.+
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~---i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPL---FGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHH---HHHHHHhcCCcchhhhhhhh
Confidence 3588899999999999999999999999876 43 2334444444555544433 33322210 000
Q ss_pred --ccchhhhHHhHHHHHHHHHHHHH
Q 036062 130 --GLRKGVMLFLAICTSFEFVCILL 152 (333)
Q Consensus 130 --~~~~s~~iyF~~a~~~~~~~~~~ 152 (333)
+...-...|+.++.+..++.++.
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~ 109 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIF 109 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01123455777777766666533
No 37
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=95.81 E-value=1.5 Score=41.63 Aligned_cols=96 Identities=13% Similarity=-0.001 Sum_probs=47.8
Q ss_pred hhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhh
Q 036062 10 LVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVG 89 (333)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~g 89 (333)
.++.++..+...+.-.+.+|...|.-+..+.++..+........+ .++..++...+.|++.+.......+
T Consensus 33 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~l~g~~~~~~~~~~~~ 102 (377)
T PRK11102 33 SAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ----------TIDQLIYMRFLHGLAAAAASVVINA 102 (377)
T ss_pred HHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc----------cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666677777655444445554444444433221 1233444556667766665554444
Q ss_pred hcc-cCChHHH----HHHHhhhhhhhHHHHH
Q 036062 90 DLS-FMYPEFM----QSFFAGLAASGALTSG 115 (333)
Q Consensus 90 la~-~~p~~~~----~a~~~Gqg~aGi~~s~ 115 (333)
+.. .+|++.. .....+.++++++...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 133 (377)
T PRK11102 103 LMRDMFPKEEFSRMMSFVTLVMTIAPLLAPI 133 (377)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 3564432 2223444555555443
No 38
>PRK12382 putative transporter; Provisional
Probab=95.75 E-value=0.87 Score=43.68 Aligned_cols=67 Identities=6% Similarity=-0.033 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhhhhcccccccccCcchHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHHHHhhhcchhh
Q 036062 252 LIASYNVWDLIARYIPLVKCVKLESRKGLMITILCRFLLVPAFYFTAKYGDQGWMIFLTSFLGLTNGYLT 321 (333)
Q Consensus 252 ~~~~fNlgD~iGR~l~~~~~~~~~~~~~l~~~~~~R~ifiplf~lc~~~~~d~~~~i~~~lfgltNGy~~ 321 (333)
....+.++..+|+...++...+..++|.+......-.+-..++. ..++.++..+..+++|+..|-..
T Consensus 254 ~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~g~~~~~~~ 320 (392)
T PRK12382 254 TLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLW---LAPTAWVALAGAALTGAGCSLIF 320 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHH---HcccHHHHHHHHHHHHHHHHhHH
Confidence 34567788888887766532222233444333333332222211 12344444556778888877443
No 39
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=95.69 E-value=2.2 Score=41.38 Aligned_cols=94 Identities=13% Similarity=0.047 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhhc
Q 036062 12 YQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGDL 91 (333)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gla 91 (333)
+.+...+...+.-.+.+|+..|.=+..+.++..+..+..... + .++..++.-.+.|++.+.......++.
T Consensus 64 ~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~---~-------~~~~l~~~r~l~G~~~g~~~~~~~~~i 133 (394)
T PRK10213 64 TAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA---N-------SFSLLLIGRACLGLALGGFWAMSASLT 133 (394)
T ss_pred HHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH---C-------hHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444555556677766544444555554433332221 1 234445555677777776666666555
Q ss_pred c-cCChHH----HHHHHhhhhhhhHHHHH
Q 036062 92 S-FMYPEF----MQSFFAGLAASGALTSG 115 (333)
Q Consensus 92 ~-~~p~~~----~~a~~~Gqg~aGi~~s~ 115 (333)
+ .+|++. ..-+..+.+++.++...
T Consensus 134 ~~~~~~~~~~~a~~~~~~~~~~g~~ig~~ 162 (394)
T PRK10213 134 MRLVPPRTVPKALSVIFGAVSIALVIAAP 162 (394)
T ss_pred HHHcCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 466442 22234445555444433
No 40
>PRK10091 MFS transport protein AraJ; Provisional
Probab=95.43 E-value=2.1 Score=41.02 Aligned_cols=98 Identities=13% Similarity=0.103 Sum_probs=51.2
Q ss_pred eehhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccc
Q 036062 7 ALTLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGG 86 (333)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s 86 (333)
+...++.+...+...+.-.+.+|.+.|.-+..+..+..+..+.... .+ .++..++.-++.|++.+.....
T Consensus 42 ~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~---~~-------~~~~l~~~r~l~G~~~~~~~~~ 111 (382)
T PRK10091 42 HMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTL---SS-------SYLMLAIGRLVSGFPHGAFFGV 111 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHH---hC-------cHHHHHHHHHHHHhhhHHHHHH
Confidence 3445556666677777777778887655555555554433333222 11 1233444556677766655444
Q ss_pred hhhhcc-cCChHH----HHHHHhhhhhhhHHHH
Q 036062 87 IVGDLS-FMYPEF----MQSFFAGLAASGALTS 114 (333)
Q Consensus 87 ~~gla~-~~p~~~----~~a~~~Gqg~aGi~~s 114 (333)
...+.+ .+|++. +..+..|+++++.+..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 144 (382)
T PRK10091 112 GAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGI 144 (382)
T ss_pred HHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhc
Confidence 333333 355543 2333456666666543
No 41
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=95.41 E-value=1.7 Score=46.23 Aligned_cols=146 Identities=9% Similarity=-0.030 Sum_probs=76.4
Q ss_pred eehhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccc
Q 036062 7 ALTLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGG 86 (333)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s 86 (333)
++..++.+..++..++.-.+..|+..|.-++.++++..+..++..+.+ .++..++.-++.|++.+.....
T Consensus 206 ~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~----------s~~~llv~R~l~G~g~g~~~p~ 275 (742)
T TIGR01299 206 MLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQ----------GYGFFLFCRLLSGFGIGGAIPI 275 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh----------hHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666667767777887777666666555444443332221 1334555566677777666666
Q ss_pred hhhhccc-CChHHHH----HHHhhhhhhhHHHHHHHHHHHhhccC---Cccc-cchhhhHHhHHHHHHHHHHHHHHHHHc
Q 036062 87 IVGDLSF-MYPEFMQ----SFFAGLAASGALTSGLRLLTKAAFEK---SHDG-LRKGVMLFLAICTSFEFVCILLYAFFF 157 (333)
Q Consensus 87 ~~gla~~-~p~~~~~----a~~~Gqg~aGi~~s~~~ii~~~~~~~---~~~~-~~~s~~iyF~~a~~~~~~~~~~~~~~l 157 (333)
.+.+.+. +|++.-+ .+..+.++++++...+........+- .+.. ...+-...|.+..+..+++++.++ .+
T Consensus 276 ~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~-~l 354 (742)
T TIGR01299 276 VFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALT-FM 354 (742)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHH-Hc
Confidence 6666664 5655433 33345555555554433221111100 0000 011223345555556666666666 78
Q ss_pred CCChHH
Q 036062 158 PKLPIV 163 (333)
Q Consensus 158 ~k~~~~ 163 (333)
+.+|..
T Consensus 355 PESPrw 360 (742)
T TIGR01299 355 PESPRF 360 (742)
T ss_pred CCCHHH
Confidence 888764
No 42
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=95.38 E-value=1.7 Score=39.89 Aligned_cols=76 Identities=12% Similarity=0.106 Sum_probs=43.2
Q ss_pred hhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchh
Q 036062 9 TLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIV 88 (333)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~ 88 (333)
...+.++..+.....-.+.+|.+.|.-+..+.++..+..+.....+ .++...+...+.|++.+..+....
T Consensus 40 ~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~g~~~~~~~~~~~ 109 (352)
T cd06174 40 VSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFAS----------SLWLLLVGRFLLGLGGGALYPAAA 109 (352)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhc----------cHHHHHHHHHHHHcccccccHhHH
Confidence 3344555555556666667777666544455555444444433321 134455566677777777777777
Q ss_pred hhcccC
Q 036062 89 GDLSFM 94 (333)
Q Consensus 89 gla~~~ 94 (333)
.+....
T Consensus 110 ~~~~~~ 115 (352)
T cd06174 110 ALIAEW 115 (352)
T ss_pred HHHHHh
Confidence 766654
No 43
>TIGR00901 2A0125 AmpG-related permease.
Probab=95.36 E-value=2.5 Score=39.81 Aligned_cols=48 Identities=17% Similarity=0.023 Sum_probs=24.8
Q ss_pred HHHHHHhhhhHhhccchhhhccc-CChH----HHHHHHhhhhhhhHHHHHHHH
Q 036062 71 VFVALFGVADAHVRGGIVGDLSF-MYPE----FMQSFFAGLAASGALTSGLRL 118 (333)
Q Consensus 71 ~~v~~~g~~~~~~q~s~~gla~~-~p~~----~~~a~~~Gqg~aGi~~s~~~i 118 (333)
....+.+.+.+..+-..-++... +|+| .......|.+++.++...+-.
T Consensus 88 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~ 140 (356)
T TIGR00901 88 GLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLAL 140 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455566555555555544 5533 223345566666666555443
No 44
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=95.35 E-value=3.1 Score=40.84 Aligned_cols=68 Identities=6% Similarity=0.022 Sum_probs=50.8
Q ss_pred HHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhhcccCChH
Q 036062 23 LAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGDLSFMYPE 97 (333)
Q Consensus 23 ~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gla~~~p~~ 97 (333)
.-.+.+|+++|.-++.|+.++.+.+.++. +-+. ...|...+...+++|.+-+++|.+.=.+.+.+.++
T Consensus 68 a~~~~kk~gyk~gi~lgL~l~avg~~lF~--pAa~-----~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~ 135 (422)
T COG0738 68 AGLLIKKLGYKAGIVLGLLLYAVGAALFW--PAAS-----SKSYGFFLVALFILASGIGLLETAANPYVTLLGKP 135 (422)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHh--hhhh-----hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCc
Confidence 45577899999999999999877666632 1111 23456677777889999999999998888887654
No 45
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=95.04 E-value=2.3 Score=41.77 Aligned_cols=83 Identities=13% Similarity=0.089 Sum_probs=48.8
Q ss_pred ceehhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhcc
Q 036062 6 RALTLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRG 85 (333)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~ 85 (333)
.+....+.++..+...+.-.+.+|...|.-+..+.++..+..++.. ..+ .+...++.-++.|++.+....
T Consensus 40 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~---~~~-------~~~~l~~~~~~~G~~~~~~~~ 109 (485)
T TIGR00711 40 QWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCG---VAP-------NLELMIIFRVIQGFGGGPLIP 109 (485)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHh---CcC-------CHHHHHHHHHHHHhhhhhHHH
Confidence 3455667777777777777778887665544445554443333322 111 234455666777888777776
Q ss_pred chhhhccc-CChHH
Q 036062 86 GIVGDLSF-MYPEF 98 (333)
Q Consensus 86 s~~gla~~-~p~~~ 98 (333)
....+... +|++.
T Consensus 110 ~~~~~i~~~~~~~~ 123 (485)
T TIGR00711 110 LSFSTLLNIYPPEK 123 (485)
T ss_pred HHHHHHHHHCCHHH
Confidence 66666554 56554
No 46
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=94.99 E-value=2.2 Score=40.95 Aligned_cols=88 Identities=14% Similarity=0.008 Sum_probs=49.5
Q ss_pred hhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchh
Q 036062 9 TLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIV 88 (333)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~ 88 (333)
..++.++..+++...-.+.+|...|.-+..+..+..+..+.......... . ....+...++.-++.|++.+.......
T Consensus 57 ~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~l~~~r~l~G~~~~~~~~~~~ 134 (399)
T PRK05122 57 ISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAA-W-PVLSLLLLLLGRLLLGIGESLAGTGSI 134 (399)
T ss_pred HHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhc-c-chhHHHHHHHHHHHHHhhHHhhcchHH
Confidence 34455556666666667778887777666676665444433333322210 0 112344455566778888887776665
Q ss_pred hh-cccCChHH
Q 036062 89 GD-LSFMYPEF 98 (333)
Q Consensus 89 gl-a~~~p~~~ 98 (333)
.. ....|++.
T Consensus 135 ~~~~~~~~~~~ 145 (399)
T PRK05122 135 LWGIGRVGALH 145 (399)
T ss_pred HHHHhhcChhh
Confidence 54 45566443
No 47
>PRK10133 L-fucose transporter; Provisional
Probab=94.87 E-value=3.8 Score=40.45 Aligned_cols=100 Identities=7% Similarity=-0.109 Sum_probs=60.7
Q ss_pred hhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhh
Q 036062 10 LVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVG 89 (333)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~g 89 (333)
..+.+...+.....-.+.+|+..|.=+..++.+..+..++......+ ..|...++.-++.|++.+..+.....
T Consensus 68 ~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a-------~~~~~ll~~r~l~G~g~g~~~~~~~~ 140 (438)
T PRK10133 68 SAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI-------MNYTLFLVGLFIIAAGLGCLETAANP 140 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34455555566666677788777766666666665555442211111 23556777788889999988888888
Q ss_pred hcccCChHHHH-----HHHhhhhhhhHHHHHH
Q 036062 90 DLSFMYPEFMQ-----SFFAGLAASGALTSGL 116 (333)
Q Consensus 90 la~~~p~~~~~-----a~~~Gqg~aGi~~s~~ 116 (333)
+....+++... ....+.++++.+..++
T Consensus 141 ~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~ 172 (438)
T PRK10133 141 FVTVLGPESSGHFRLNLAQTFNSFGAIIAVVF 172 (438)
T ss_pred HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666654443 3345555555555544
No 48
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=94.81 E-value=2.6 Score=41.49 Aligned_cols=94 Identities=11% Similarity=0.023 Sum_probs=52.4
Q ss_pred ehhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhh--hccCCCCcchHHHHHHHHHHHhhhhHhhcc
Q 036062 8 LTLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDL--ATSGEGGLGPFLGVCVFVALFGVADAHVRG 85 (333)
Q Consensus 8 ~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~ 85 (333)
..-.+.+...++.++.-.+.+|+..|.=+..+.+++.+..+....... .....+....+...++.=++.|++.+....
T Consensus 60 ~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~ 139 (479)
T PRK10077 60 CVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASM 139 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhh
Confidence 344556666667777777888876666555555554444433322111 000001122334455666778888888888
Q ss_pred chhhhccc-CChHHHHH
Q 036062 86 GIVGDLSF-MYPEFMQS 101 (333)
Q Consensus 86 s~~gla~~-~p~~~~~a 101 (333)
...++.+. +|++.-..
T Consensus 140 ~~~~~i~e~~~~~~rg~ 156 (479)
T PRK10077 140 LSPMYIAEIAPAHIRGK 156 (479)
T ss_pred HHHHHHHhhCChhhhhH
Confidence 77777555 66554333
No 49
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=94.65 E-value=3.3 Score=42.26 Aligned_cols=85 Identities=14% Similarity=0.027 Sum_probs=57.7
Q ss_pred hhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhh
Q 036062 10 LVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVG 89 (333)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~g 89 (333)
.+..+|.++..+..=.+..|.+.|.=++.+-++..+..++++.+.... ....+..++..++.|+++++...+..+
T Consensus 52 ~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~-----~~~~~~Ll~~~fl~g~~~a~~~PA~~A 126 (524)
T PF05977_consen 52 AASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFG-----LLSPWLLLILTFLLGIGSAFFNPAWQA 126 (524)
T ss_pred HHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhC-----cCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667777766666678888777766667666665555555554322 233456777888899999999888888
Q ss_pred hccc-CChHHH
Q 036062 90 DLSF-MYPEFM 99 (333)
Q Consensus 90 la~~-~p~~~~ 99 (333)
+... .|++..
T Consensus 127 ~ip~lV~~~~L 137 (524)
T PF05977_consen 127 IIPELVPKEDL 137 (524)
T ss_pred HHHHhccHhhH
Confidence 8764 675543
No 50
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=94.63 E-value=2.7 Score=41.47 Aligned_cols=98 Identities=10% Similarity=-0.078 Sum_probs=50.7
Q ss_pred hhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchh
Q 036062 9 TLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIV 88 (333)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~ 88 (333)
..++.++..+.....-.+.+|...|.-+..+.++..+..++...... ..++..++.-++.|++.+.......
T Consensus 82 ~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~r~~~G~~~~~~~~~~~ 153 (465)
T TIGR00894 82 LSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG--------GGIALVVFCRVIQGLAQGSVSPATH 153 (465)
T ss_pred HHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH--------cCchHHHHHHHHHHHhcccchhhHH
Confidence 34455555566666666777776665455555544443333222211 1123345555667777777666666
Q ss_pred hhccc-CChHHHH----HHHhhhhhhhHHHH
Q 036062 89 GDLSF-MYPEFMQ----SFFAGLAASGALTS 114 (333)
Q Consensus 89 gla~~-~p~~~~~----a~~~Gqg~aGi~~s 114 (333)
.+.+. +|++... ....|..+++++..
T Consensus 154 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~ 184 (465)
T TIGR00894 154 KIIVKWAPPKERSRLLGMSTSGFQLGTFIFL 184 (465)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65554 6655433 33344444444443
No 51
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=94.34 E-value=5.1 Score=38.34 Aligned_cols=78 Identities=15% Similarity=0.016 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhh
Q 036062 11 VYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGD 90 (333)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gl 90 (333)
.+.++..+...+.-.+.+|...|.-+..+.++..+...... ..+ .+...++.-.+.|++.+..+....++
T Consensus 46 ~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~---~~~-------~~~~~~~~~~l~g~~~~~~~~~~~~~ 115 (392)
T PRK10473 46 VYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCS---LAE-------TSSLFLAGRFLQGIGAGCCYVVAFAI 115 (392)
T ss_pred HHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHH---HhC-------cHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34445555555566667777655434444444333332221 111 12223344556677777777666666
Q ss_pred ccc-CChHH
Q 036062 91 LSF-MYPEF 98 (333)
Q Consensus 91 a~~-~p~~~ 98 (333)
... +|++.
T Consensus 116 i~~~~~~~~ 124 (392)
T PRK10473 116 LRDTLDDRR 124 (392)
T ss_pred HHHHcCHHH
Confidence 554 56443
No 52
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=94.33 E-value=4.7 Score=37.96 Aligned_cols=94 Identities=13% Similarity=0.031 Sum_probs=46.9
Q ss_pred hhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhh
Q 036062 11 VYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGD 90 (333)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gl 90 (333)
.+.+...+.....-++.+|...|.-+..+.+...+..+. . ..+ .++..++.-.+.|++.+..+...-.+
T Consensus 43 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~---~-~~~-------~~~~l~~~~~~~g~g~~~~~~~~~~~ 111 (355)
T TIGR00896 43 LPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILI---R-SAP-------GTALLFAGTALIGVGIAIINVLLPSL 111 (355)
T ss_pred HHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHH---H-Hhc-------cHHHHHHHHHHHHHHHHHHhccchHH
Confidence 344555555566667778877766555555443332222 1 111 12233455556666666655554444
Q ss_pred cccC-ChH---HHHHHHhhhhhhhHHHHH
Q 036062 91 LSFM-YPE---FMQSFFAGLAASGALTSG 115 (333)
Q Consensus 91 a~~~-p~~---~~~a~~~Gqg~aGi~~s~ 115 (333)
.... |++ .++.+..++++++.+...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~g~~i~~~ 140 (355)
T TIGR00896 112 IKRDFPQRVGLMTGLYSMALMGGAALAAA 140 (355)
T ss_pred HHHhCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 4443 332 334444555555555443
No 53
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=94.17 E-value=0.36 Score=48.87 Aligned_cols=202 Identities=14% Similarity=0.129 Sum_probs=103.2
Q ss_pred CCCceehhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHh
Q 036062 3 HPTRALTLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAH 82 (333)
Q Consensus 3 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~ 82 (333)
|.-+++..++.++-.+++.....+.+|++. .| ++..+.++..++.++.... ..|...+++=++.|.+.+.
T Consensus 81 ~~l~~~~t~F~v~Yii~~~p~~~L~~r~~l-s~---~l~~~~~~w~~~~~~~~~~------~s~~~~ialr~llGl~es~ 150 (495)
T KOG2533|consen 81 NQLGVLDTVFYVGYIIGQFPSGLLGDRFPL-SK---GLSVSGILWGLFGFLTAAV------HSFPGLIALRFLLGLFESG 150 (495)
T ss_pred hhhhhHHHHHHHHHHHHHhhHHHHHHhCCh-HH---HHHHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHhcc
Confidence 444566677777777888888888899882 22 2222222222333222211 1244566667777777766
Q ss_pred hccchhhhcccC-ChH----HHHHHHhhhhhhhHHHHHHHHHHHhhccCCccccchh-hhHHhHHHHHHHHHHHHHHHHH
Q 036062 83 VRGGIVGDLSFM-YPE----FMQSFFAGLAASGALTSGLRLLTKAAFEKSHDGLRKG-VMLFLAICTSFEFVCILLYAFF 156 (333)
Q Consensus 83 ~q~s~~gla~~~-p~~----~~~a~~~Gqg~aGi~~s~~~ii~~~~~~~~~~~~~~s-~~iyF~~a~~~~~~~~~~~~~~ 156 (333)
.-.+...+.|.+ .++ -+..+.+.++++++++++++=...-.- +.....+ ...|...+++..+..+++|+ +
T Consensus 151 ~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~---~~~~~~gW~~~FiI~G~i~~~~gi~~f~-~ 226 (495)
T KOG2533|consen 151 GWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLN---GSGGLAGWRWLFIIEGVITLVLGIVVFF-F 226 (495)
T ss_pred cchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhc---CCCCcCCceeehhHHHHHHHHHHheEEE-E
Confidence 666666666664 433 233444566666666666554321111 1111222 23344556666666888888 8
Q ss_pred cCCChHHHHHHHhhhhcCCCCccchhhhhcccCccchhhhhHHhhhhccHHHHHH--HHHHHHHHHHHHhhhhc
Q 036062 157 FPKLPIVKYFRSKAASEGSKTVSADLAAAGIQTKAAQAEDEAKQYERLSNKQLFI--QNFDYALDLFLIYVLTL 228 (333)
Q Consensus 157 l~k~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~i~~~~~~i~l~f~vTl 228 (333)
++..|.--...+++ |++... ++.+.++.. +.+++ .++..+++.+| ++|+.+++-++...+..
T Consensus 227 lp~~P~~~~fl~~~----ek~~~~----~~~~~~~~~-~~~~~-~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~ 290 (495)
T KOG2533|consen 227 LPDNPSKAWFLTDE----EKELVV----ERLRESPSG-GIENK-FKWKGFKEALKDPGVWPFSLCYFFLKLVNY 290 (495)
T ss_pred ecCChhhccccchH----HHHHHH----HHHHhccCC-Ccccc-cCHHHHHHHHhchhHHHHHHHHHHHhhccc
Confidence 99988622221111 111000 000000000 01111 34445666665 77888888777766665
No 54
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=94.16 E-value=0.63 Score=46.51 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=21.6
Q ss_pred HHHHHHHHhhhhHhhccchhhhcccCChHHHHH
Q 036062 69 VCVFVALFGVADAHVRGGIVGDLSFMYPEFMQS 101 (333)
Q Consensus 69 ~l~~v~~~g~~~~~~q~s~~gla~~~p~~~~~a 101 (333)
..+...+.+.+.+..++..+++...+++++...
T Consensus 351 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~ 383 (476)
T PLN00028 351 AIVVMILFSIFVQAACGATFGIVPFVSRRSLGV 383 (476)
T ss_pred HHHHHHHHHHHHHHhhhhhcccCcccChhhchh
Confidence 334445556666667777888888888775543
No 55
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=93.96 E-value=7.6 Score=43.12 Aligned_cols=53 Identities=13% Similarity=-0.100 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhhhhHhhccchhhhccc-CChH----HHHHHHhhhhhhhHHHHHHHH
Q 036062 66 FLGVCVFVALFGVADAHVRGGIVGDLSF-MYPE----FMQSFFAGLAASGALTSGLRL 118 (333)
Q Consensus 66 f~~~l~~v~~~g~~~~~~q~s~~gla~~-~p~~----~~~a~~~Gqg~aGi~~s~~~i 118 (333)
++..++..++.|++++.......++... +|++ -++.++.+.+++.++..++--
T Consensus 108 ~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g 165 (1140)
T PRK06814 108 VPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGG 165 (1140)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 4556777888899999888877777654 5543 344555777777776655443
No 56
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=93.93 E-value=3 Score=43.53 Aligned_cols=110 Identities=13% Similarity=-0.013 Sum_probs=66.5
Q ss_pred ceehhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhc----------------------c-----
Q 036062 6 RALTLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLAT----------------------S----- 58 (333)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~----------------------~----- 58 (333)
.++...|.+++++..+...+++.|.+.+.=+..+.+++.+..++++.-..-. .
T Consensus 71 G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~ 150 (633)
T TIGR00805 71 GLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLT 150 (633)
T ss_pred eeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCC
Confidence 4567788999999999999999997655555557666666665544432000 0
Q ss_pred ------------CCCC--cchHHHHHHHHHHHhhhhHhhccchhhhccc-CC----hHHHHHHHhhhhhhhHHHHH
Q 036062 59 ------------GEGG--LGPFLGVCVFVALFGVADAHVRGGIVGDLSF-MY----PEFMQSFFAGLAASGALTSG 115 (333)
Q Consensus 59 ------------~~~~--~~~f~~~l~~v~~~g~~~~~~q~s~~gla~~-~p----~~~~~a~~~Gqg~aGi~~s~ 115 (333)
.... ...+...++.-++.|++.+........+... +| +++.+.+.++..++..+..+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~l 226 (633)
T TIGR00805 151 QALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYL 226 (633)
T ss_pred CCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHH
Confidence 0000 1135556667778888877766666666555 44 33555555555555555543
No 57
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=93.69 E-value=1.8 Score=44.01 Aligned_cols=74 Identities=19% Similarity=0.107 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhhhhhccccccccc-CcchHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHHHHhhhcchhhhhhh
Q 036062 250 LVLIASYNVWDLIARYIPLVKCVKLE-SRKGLMITILCRFLLVPAFYFTAKYGDQGWMIFLTSFLGLTNGYLTVCVM 325 (333)
Q Consensus 250 ~~~~~~fNlgD~iGR~l~~~~~~~~~-~~~~l~~~~~~R~ifiplf~lc~~~~~d~~~~i~~~lfgltNGy~~t~~m 325 (333)
-.+.-+-++.|.+||.+..+...+.+ +++++...++....+-.+ ++...++-+..+...++||+.-|+..++.-
T Consensus 336 a~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~--~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~ 410 (509)
T KOG2504|consen 336 AFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARL--FLPFATTYVGLIVFSILFGFCVGSFSSLTP 410 (509)
T ss_pred HHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHH--HHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567789999999999988543322 345555555554443332 221123334556668899999998877653
No 58
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=93.36 E-value=8.1 Score=37.36 Aligned_cols=51 Identities=14% Similarity=0.076 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhhhHhhccchhhhcccC--ChH----HHHHHHhhhhhhhHHHHHH
Q 036062 66 FLGVCVFVALFGVADAHVRGGIVGDLSFM--YPE----FMQSFFAGLAASGALTSGL 116 (333)
Q Consensus 66 f~~~l~~v~~~g~~~~~~q~s~~gla~~~--p~~----~~~a~~~Gqg~aGi~~s~~ 116 (333)
++..++...+.+.+.+..+....++.+.. +++ ....-+.+..+++++.+.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~ 155 (437)
T TIGR00792 99 LVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVI 155 (437)
T ss_pred HHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556777777777777776654 222 2222234555566655543
No 59
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=93.24 E-value=4.8 Score=39.20 Aligned_cols=94 Identities=15% Similarity=0.044 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhh-c
Q 036062 13 QPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGD-L 91 (333)
Q Consensus 13 ~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gl-a 91 (333)
.+...+..+..-.+.+|+..|.=+..++++..+........+ .+....+.-.+.|++.+....+...+ +
T Consensus 53 ~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~----------~~~~l~~~r~l~G~~~~~~~~~~~~~~~ 122 (412)
T TIGR02332 53 YAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFAT----------GPESLYLLRILVGIAEAGFLPGILLYLT 122 (412)
T ss_pred HHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc----------CHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 333334444444556666555433444444433333322221 12233444556677776665555554 4
Q ss_pred ccCChHH----HHHHHhhhhhhhHHHHHH
Q 036062 92 SFMYPEF----MQSFFAGLAASGALTSGL 116 (333)
Q Consensus 92 ~~~p~~~----~~a~~~Gqg~aGi~~s~~ 116 (333)
..+|++. +..+..|.++++++...+
T Consensus 123 ~~~~~~~rg~~~~~~~~~~~~g~~~~~~~ 151 (412)
T TIGR02332 123 FWFPAYFRARANALFMIAMPVTMALGLIL 151 (412)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578643 444556666666665544
No 60
>PRK12307 putative sialic acid transporter; Provisional
Probab=93.05 E-value=8.9 Score=36.98 Aligned_cols=95 Identities=7% Similarity=-0.071 Sum_probs=53.2
Q ss_pred hhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhh
Q 036062 10 LVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVG 89 (333)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~g 89 (333)
..+.++..+.....-.+.+|...|.=+..+.++..+...+....+ .++..++.-++.|++.+........
T Consensus 60 ~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~----------~~~~l~~~r~l~G~g~g~~~~~~~~ 129 (426)
T PRK12307 60 TAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLAS----------GVIMLTLSRFIVGMGMAGEYACAST 129 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 345555566666666677787666555556655555444433322 1334455556777776655555555
Q ss_pred h-cccCChHH----HHHHHhhhhhhhHHHH
Q 036062 90 D-LSFMYPEF----MQSFFAGLAASGALTS 114 (333)
Q Consensus 90 l-a~~~p~~~----~~a~~~Gqg~aGi~~s 114 (333)
+ +..+|++. +.....|.++++++..
T Consensus 130 ~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~ 159 (426)
T PRK12307 130 YAVESWPKHLKSKASAFLVSGFGIGNIIAA 159 (426)
T ss_pred HHHHhCCHhHhhHhhhHHHHHHhHHHHHHH
Confidence 4 34466553 3345566677666654
No 61
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=92.90 E-value=9.3 Score=36.75 Aligned_cols=78 Identities=15% Similarity=0.124 Sum_probs=39.1
Q ss_pred hhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhh
Q 036062 11 VYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGD 90 (333)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gl 90 (333)
.+.++..+...+.-.+.+|...|.-+..+..+..+..+.....+ .++..++.-.+.|++.+......++.
T Consensus 56 ~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~----------~~~~l~~~~~l~G~~~~~~~~~~~~~ 125 (406)
T PRK15402 56 AYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQ----------SIEQFTLLRFLQGIGLCFIGAVGYAA 125 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHc----------cHHHHHHHHHHHHhHhhhHHHHHHHH
Confidence 45555555555566677787666544445544443333322211 12334445556666666555444444
Q ss_pred cc-cCChHH
Q 036062 91 LS-FMYPEF 98 (333)
Q Consensus 91 a~-~~p~~~ 98 (333)
.. .+|++.
T Consensus 126 i~~~~~~~~ 134 (406)
T PRK15402 126 IQESFEEAD 134 (406)
T ss_pred HHHHhChhH
Confidence 33 456543
No 62
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=92.67 E-value=10 Score=36.59 Aligned_cols=93 Identities=13% Similarity=-0.013 Sum_probs=44.0
Q ss_pred HHHHHHHhhhccCC-----CccchH-HHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhhc
Q 036062 18 GTMAILAYNESKID-----TRKRNI-TGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGDL 91 (333)
Q Consensus 18 ~~~~~~~~~~~~~~-----~~~Ri~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gla 91 (333)
+...+.-.+.+|.+ .|.|.+ .+.++..+.+..+...+.. ..++...+..++.+...+......-+++
T Consensus 47 ~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~al~ 119 (402)
T PRK11902 47 IFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPH-------AALWPLAGLAVLVAFLSASQDIVFDAYS 119 (402)
T ss_pred HHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCcc-------chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445566663 333433 3344444444444333211 1122223333334555554444444444
Q ss_pred cc-CChH----HHHHHHhhhhhhhHHHHHHH
Q 036062 92 SF-MYPE----FMQSFFAGLAASGALTSGLR 117 (333)
Q Consensus 92 ~~-~p~~----~~~a~~~Gqg~aGi~~s~~~ 117 (333)
.. .|+| +....+.|++++.++...+-
T Consensus 120 ~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~ 150 (402)
T PRK11902 120 TDVLHPEERGAGAAVKVLGYRLAMLVSGGLA 150 (402)
T ss_pred HHhcChhhhhHHHHHHHHHHHHHHHHHhHHH
Confidence 43 5544 55556778888877776544
No 63
>PRK15011 sugar efflux transporter B; Provisional
Probab=92.59 E-value=8.9 Score=36.89 Aligned_cols=16 Identities=6% Similarity=-0.078 Sum_probs=9.8
Q ss_pred HHHHHHHHhhhhhccc
Q 036062 254 ASYNVWDLIARYIPLV 269 (333)
Q Consensus 254 ~~fNlgD~iGR~l~~~ 269 (333)
....++..+|+.+.++
T Consensus 259 ~~~~~~~i~~~~~~G~ 274 (393)
T PRK15011 259 GTAAGLEIPTMLIAGY 274 (393)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445666777766655
No 64
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=92.54 E-value=10 Score=36.28 Aligned_cols=36 Identities=14% Similarity=0.078 Sum_probs=19.1
Q ss_pred hhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHH
Q 036062 10 LVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFA 45 (333)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~ 45 (333)
..+.++..+...+.-.+.+|.+.|.-+..+.....+
T Consensus 50 ~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~ 85 (394)
T PRK11652 50 AAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFIL 85 (394)
T ss_pred HHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHH
Confidence 344555555555555666777654444444444433
No 65
>PRK11043 putative transporter; Provisional
Probab=92.41 E-value=11 Score=36.23 Aligned_cols=34 Identities=6% Similarity=0.013 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHHHHhhhccCCCccchHHHHHHHH
Q 036062 11 VYQPFALGTMAILAYNESKIDTRKRNITGYIIFF 44 (333)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~ 44 (333)
.+.++..+.....-.+.+|...|.-+..+..+..
T Consensus 49 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 82 (401)
T PRK11043 49 LFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFA 82 (401)
T ss_pred HHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHH
Confidence 3444445555555666677766554444444433
No 66
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=92.37 E-value=3.6 Score=39.45 Aligned_cols=71 Identities=11% Similarity=0.082 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhhhhcccccccccCcchHHHHHH-HHHHHHHHHHhhhhcCchhHHHHHHHHHhhhcchhhhhhhcc
Q 036062 253 IASYNVWDLIARYIPLVKCVKLESRKGLMITIL-CRFLLVPAFYFTAKYGDQGWMIFLTSFLGLTNGYLTVCVMTV 327 (333)
Q Consensus 253 ~~~fNlgD~iGR~l~~~~~~~~~~~~~l~~~~~-~R~ifiplf~lc~~~~~d~~~~i~~~lfgltNGy~~t~~m~~ 327 (333)
..+-.++..+++.+.++..-+. +++....... .-.+. +++....++.++.++.++++|++.|......+.+
T Consensus 246 ~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 317 (382)
T PRK11128 246 WSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVVR---WGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRY 317 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH---HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355567777766655432222 3333322222 11111 1111122455556667889999988776666554
No 67
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=91.82 E-value=12 Score=35.63 Aligned_cols=69 Identities=16% Similarity=0.056 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhhhhcccccccccCcchHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHHHHhhhcchhhh
Q 036062 251 VLIASYNVWDLIARYIPLVKCVKLESRKGLMITILCRFLLVPAFYFTAKYGDQGWMIFLTSFLGLTNGYLTV 322 (333)
Q Consensus 251 ~~~~~fNlgD~iGR~l~~~~~~~~~~~~~l~~~~~~R~ifiplf~lc~~~~~d~~~~i~~~lfgltNGy~~t 322 (333)
.....+.++..+++...++..-+. ++|.+.....+ +....++.....++.+...+..+++|+.+|-...
T Consensus 262 ~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 330 (408)
T PRK09874 262 MIASVPGVAALLSAPRLGKLGDRI-GPEKILITALI--FSVLLLIPMSFVQTPLQLGILRFLLGAADGALLP 330 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHH--HHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHH
Confidence 345566778888776555422222 23333222211 1111111111123444445567778888775443
No 68
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.98 E-value=2 Score=42.21 Aligned_cols=82 Identities=16% Similarity=0.167 Sum_probs=59.1
Q ss_pred HHHHHHh---hhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhhccc-C
Q 036062 19 TMAILAY---NESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGDLSF-M 94 (333)
Q Consensus 19 ~~~~~~~---~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gla~~-~ 94 (333)
-++.|.. +.+|+.++.-++.|+++++..++++++.+. |....+.=.+-|+++|...-+-+++.+. |
T Consensus 119 qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~s----------y~~l~vAR~LQgvgsA~~~tsglamlAd~f 188 (464)
T KOG3764|consen 119 QLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNS----------YPMLFVARSLQGVGSAFADTSGLAMLADVF 188 (464)
T ss_pred HHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcch----------hHHHHHHHHHhhhhHHHHHhhhHHHHHHHc
Confidence 3344444 446788899999999999999999877763 3346666677899999888888887665 8
Q ss_pred ChHHHHHHHhhhhhhh
Q 036062 95 YPEFMQSFFAGLAASG 110 (333)
Q Consensus 95 p~~~~~a~~~Gqg~aG 110 (333)
|++.-.+-..|.+.++
T Consensus 189 ~~d~er~~vmGialgf 204 (464)
T KOG3764|consen 189 PEDNERGSVMGIALGF 204 (464)
T ss_pred ccchhhhHHHHHHHHH
Confidence 8777655555555544
No 69
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=90.81 E-value=18 Score=35.85 Aligned_cols=66 Identities=23% Similarity=0.155 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhhhhceeccc---eeeeccccccCCchHHHHHHHHHHHHHHhhhhhccccccccc-Ccch
Q 036062 211 IQNFDYALDLFLIYVLTLSIFPG---FLYENTGQHRLGEWYSLVLIASYNVWDLIARYIPLVKCVKLE-SRKG 279 (333)
Q Consensus 211 ~~i~~~~~~i~l~f~vTl~vFPg---i~~~~~~~~~~~~w~~~~~~~~fNlgD~iGR~l~~~~~~~~~-~~~~ 279 (333)
|-+|..+++-+++|+|=..+--. ...+.+.. +.-..-..+.+|-++-+.|-.+++|...+.. .+|.
T Consensus 252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~---s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~ 321 (448)
T COG2271 252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGF---SLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRG 321 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccc
Confidence 46788888888898887744211 01111111 1112456689999999999999999544433 3443
No 70
>PRK09848 glucuronide transporter; Provisional
Probab=90.12 E-value=12 Score=36.79 Aligned_cols=69 Identities=7% Similarity=0.025 Sum_probs=35.6
Q ss_pred HHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhhcccC
Q 036062 18 GTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGDLSFM 94 (333)
Q Consensus 18 ~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gla~~~ 94 (333)
+...+..++.+|.+.+.-+..+.++..+..+.+...+ ...++...+...+.|++.+..+....++.+..
T Consensus 279 ~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~--------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~ 347 (448)
T PRK09848 279 ASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVS--------VWSLPVALVALAIASIGQGVTMTVMWALEADT 347 (448)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC--------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555677777766555666655444433332211 01122333444556666666666666665543
No 71
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=90.10 E-value=15 Score=35.12 Aligned_cols=70 Identities=10% Similarity=0.012 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhhhhcccccccccCcchHHHH----HHHHHHHHHHHHhhhhcCchhHHHHHHHHHhhhcchhhhhhhccc
Q 036062 253 IASYNVWDLIARYIPLVKCVKLESRKGLMIT----ILCRFLLVPAFYFTAKYGDQGWMIFLTSFLGLTNGYLTVCVMTVA 328 (333)
Q Consensus 253 ~~~fNlgD~iGR~l~~~~~~~~~~~~~l~~~----~~~R~ifiplf~lc~~~~~d~~~~i~~~lfgltNGy~~t~~m~~~ 328 (333)
+....++..++..+.....-+ .++|.++.. ..+|.+..+ ..++.+..++.+.+.|++-|-+...+|.+.
T Consensus 246 ~~~~~~~~i~~~~~~~~l~~r-~g~~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i 318 (382)
T TIGR00902 246 WGIGVLAEIIIFAFSNKLFQN-CSARDLLLISAIACVGRWAIIG------AIEAFPLIFLLQILHCGTFAVCHLAAMRYI 318 (382)
T ss_pred HHHHHHHHHHHHHHhHHHHhh-CCHHHHHHHHHHHHHHHHHHHH------hHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666655442111 133433322 223433321 124455567779999999998888877665
Q ss_pred C
Q 036062 329 P 329 (333)
Q Consensus 329 P 329 (333)
.
T Consensus 319 ~ 319 (382)
T TIGR00902 319 A 319 (382)
T ss_pred H
Confidence 4
No 72
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=89.45 E-value=23 Score=34.85 Aligned_cols=251 Identities=16% Similarity=0.137 Sum_probs=124.3
Q ss_pred hhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhhc
Q 036062 12 YQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGDL 91 (333)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gla 91 (333)
|-..-.+...+...+..|++.|.-....+.++++.-++ ...+ ..|...++.=++.|++.+..-+-..+++
T Consensus 57 yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l---~alA-------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a 126 (394)
T COG2814 57 YALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLL---SALA-------PSFAVLLLARALAGLAHGVFWSIAAALA 126 (394)
T ss_pred HHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHH---HHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455566777788886665444444444333333 2222 2477888888899999998888888888
Q ss_pred ccC-ChH----HHHHHHhhhhhhhHHHHHH-HHHHHhhccCCccccchhhhHHhHHHHHHHHHHHHHHHHHcCCChHHHH
Q 036062 92 SFM-YPE----FMQSFFAGLAASGALTSGL-RLLTKAAFEKSHDGLRKGVMLFLAICTSFEFVCILLYAFFFPKLPIVKY 165 (333)
Q Consensus 92 ~~~-p~~----~~~a~~~Gqg~aGi~~s~~-~ii~~~~~~~~~~~~~~s~~iyF~~a~~~~~~~~~~~~~~l~k~~~~~~ 165 (333)
+.+ ||+ -+.-++.|..+|=++..-+ +.+-+.. .=...|+.++.+-++..+..+. .+++
T Consensus 127 ~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~---------GWR~~F~~ia~l~ll~~~~~~~-~lP~------ 190 (394)
T COG2814 127 ARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF---------GWRATFLAIAVLALLALLLLWK-LLPP------ 190 (394)
T ss_pred HHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh---------hHHHHHHHHHHHHHHHHHHHHH-hCCC------
Confidence 875 443 3344455555555444222 2222221 1122366666666666665555 4541
Q ss_pred HHHhhhhcCCCCccchhhhhcccCccchhhhhHHhhhhccHHHHH--HHHHHHHHHHHHHhhhhceeccceeeecccccc
Q 036062 166 FRSKAASEGSKTVSADLAAAGIQTKAAQAEDEAKQYERLSNKQLF--IQNFDYALDLFLIYVLTLSIFPGFLYENTGQHR 243 (333)
Q Consensus 166 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~i~~~~~~i~l~f~vTl~vFPgi~~~~~~~~~ 243 (333)
++ .++++. . +..+..+++ +++|...+..++.+.=.+..|.=+..-.++...
T Consensus 191 ---~~-~~~~~~--------------~---------~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g 243 (394)
T COG2814 191 ---SE-ISGSLP--------------G---------PLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAG 243 (394)
T ss_pred ---cc-CCCCCC--------------c---------chhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccC
Confidence 00 000000 0 000111222 245555555555555555444222111111111
Q ss_pred CCchHHHHHHHHHHHHHHhhhhhcccccccccCcchHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHHHHhhhcc
Q 036062 244 LGEWYSLVLIASYNVWDLIARYIPLVKCVKLESRKGLMITILCRFLLVPAFYFTAKYGDQGWMIFLTSFLGLTNG 318 (333)
Q Consensus 244 ~~~w~~~~~~~~fNlgD~iGR~l~~~~~~~~~~~~~l~~~~~~R~ifiplf~lc~~~~~d~~~~i~~~lfgltNG 318 (333)
.+.-...+..+.|.++-++|..+.+....+ +++....... =+.-..++.+.-.-++.+..++.++++|++++
T Consensus 244 ~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~-~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~ 315 (394)
T COG2814 244 FSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAAL-LLLALALLALTFTGASPALALALLFLWGFAFS 315 (394)
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHH-HHHHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 112235677889999999999988874332 3332222211 11111122222112345555666777888775
No 73
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=88.49 E-value=29 Score=34.85 Aligned_cols=72 Identities=15% Similarity=0.093 Sum_probs=39.5
Q ss_pred HHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhhcccCChH
Q 036062 21 AILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGDLSFMYPE 97 (333)
Q Consensus 21 ~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gla~~~p~~ 97 (333)
+..-.+.+|...|.=+..+..+..+.+........+. ...|...++.-++.|++.+..-++.-..+..+|++
T Consensus 88 ip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~-----~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~ 159 (462)
T PRK15034 88 VPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNP-----NTPFGIFIVIALLCGFAGANFASSMGNISFFFPKA 159 (462)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHccc-----CCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCCHh
Confidence 3445566676555544445555444444433321111 12356677777778877665555555555668866
No 74
>PRK10054 putative transporter; Provisional
Probab=88.05 E-value=26 Score=33.79 Aligned_cols=36 Identities=11% Similarity=0.091 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHH
Q 036062 14 PFALGTMAILAYNESKIDTRKRNITGYIIFFASTLA 49 (333)
Q Consensus 14 ~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~ 49 (333)
+...+.....-.+.+|...|.-+..+.....+..+.
T Consensus 54 ~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~ 89 (395)
T PRK10054 54 TIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIA 89 (395)
T ss_pred HHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHH
Confidence 333444455555667776655444455444333333
No 75
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=87.99 E-value=26 Score=33.58 Aligned_cols=29 Identities=10% Similarity=0.074 Sum_probs=18.3
Q ss_pred CchhHHHHHHHHHhhhcchhhhhhhcccC
Q 036062 301 GDQGWMIFLTSFLGLTNGYLTVCVMTVAP 329 (333)
Q Consensus 301 ~~d~~~~i~~~lfgltNGy~~t~~m~~~P 329 (333)
++.++..+..++.|+..+......+.+.+
T Consensus 305 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 333 (396)
T TIGR00882 305 TTALEVVILKMLHAFEVPFLLVGCFKYIT 333 (396)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677778777766555554544
No 76
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=87.87 E-value=32 Score=34.58 Aligned_cols=93 Identities=18% Similarity=0.052 Sum_probs=60.9
Q ss_pred hhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhh
Q 036062 11 VYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGD 90 (333)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gl 90 (333)
++-...+++++-.-.+.+|...|.-+..+.++..+.+++.+..... .|+..+++=++.|++.+..-.++-++
T Consensus 81 s~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~--------~~~~~~~~R~lqGl~~g~~~pa~~~i 152 (466)
T KOG2532|consen 81 SFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI--------GFYLLLVLRFLQGLGQGVLFPAIGSI 152 (466)
T ss_pred HHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh--------cchhhHHHHHHhHHHHhHHHhhhhce
Confidence 3445555666655667777777777777777777777777766532 22356777788888888888888888
Q ss_pred cccCChHHHHHHHhhhhhhhH
Q 036062 91 LSFMYPEFMQSFFAGLAASGA 111 (333)
Q Consensus 91 a~~~p~~~~~a~~~Gqg~aGi 111 (333)
.+...|.-=.+...+...+|-
T Consensus 153 ~~~W~P~~Ers~~~ail~~g~ 173 (466)
T KOG2532|consen 153 LAKWAPPNERSTFIAILTAGS 173 (466)
T ss_pred eeeECCHHHHHHHHHHHHHHH
Confidence 888765444444444444443
No 77
>PRK10429 melibiose:sodium symporter; Provisional
Probab=87.21 E-value=10 Score=37.63 Aligned_cols=76 Identities=18% Similarity=0.019 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhhccc
Q 036062 14 PFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGDLSF 93 (333)
Q Consensus 14 ~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gla~~ 93 (333)
++.++...+...+.+|+..+.....+..+..+..+.+....... + ...+..++...+.|++.+..+....++.+.
T Consensus 277 i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~i~~~l~g~~~~~~~~~~~am~ad 351 (473)
T PRK10429 277 AANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAA---P--HNALLIVIAGILLNIGTALFWVLQVIMVAD 351 (473)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccC---c--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555556666777788766655555554333322222211111 1 112233344445566666555555554444
Q ss_pred C
Q 036062 94 M 94 (333)
Q Consensus 94 ~ 94 (333)
.
T Consensus 352 ~ 352 (473)
T PRK10429 352 T 352 (473)
T ss_pred h
Confidence 4
No 78
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=85.91 E-value=34 Score=32.89 Aligned_cols=76 Identities=9% Similarity=-0.023 Sum_probs=45.5
Q ss_pred hhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhh
Q 036062 11 VYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGD 90 (333)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gl 90 (333)
.+.+...+.....-.+.+|...|.=+..+..+..+.+++....+ .+...++.-++.|++.+..+.....+
T Consensus 52 ~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~----------~~~~ll~~r~l~Gig~~~~~~~~~~~ 121 (393)
T PRK09705 52 LPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYP----------QSALLLSSALLGGVGIGIIQAVMPSV 121 (393)
T ss_pred HHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCc----------chHHHHHHHHHHHhHHHHHhhhhhHH
Confidence 34444455556666677777666656666666655555433322 13345566777888888777776666
Q ss_pred ccc-CCh
Q 036062 91 LSF-MYP 96 (333)
Q Consensus 91 a~~-~p~ 96 (333)
... +|+
T Consensus 122 ~~~~~~~ 128 (393)
T PRK09705 122 IKRRFQQ 128 (393)
T ss_pred HHHHccc
Confidence 665 443
No 79
>PRK10504 putative transporter; Provisional
Probab=85.65 E-value=15 Score=36.11 Aligned_cols=29 Identities=10% Similarity=0.065 Sum_probs=14.2
Q ss_pred HHHHhhhccCCCccchHHHHHHHHHHHHH
Q 036062 21 AILAYNESKIDTRKRNITGYIIFFASTLA 49 (333)
Q Consensus 21 ~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~ 49 (333)
.+..++.+|.+.+.-+..+..+..+...+
T Consensus 315 ~~~~~l~~r~g~~~~~~~~~~~~~~~~~~ 343 (471)
T PRK10504 315 RIVVQVVNRFGYRRVLVATTLGLALVSLL 343 (471)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHHH
Confidence 34455666765544444455444443333
No 80
>PRK09528 lacY galactoside permease; Reviewed
Probab=85.15 E-value=38 Score=32.74 Aligned_cols=27 Identities=15% Similarity=0.062 Sum_probs=15.1
Q ss_pred CchhHHHHHHHHHhhhcchhhhhhhcc
Q 036062 301 GDQGWMIFLTSFLGLTNGYLTVCVMTV 327 (333)
Q Consensus 301 ~~d~~~~i~~~lfgltNGy~~t~~m~~ 327 (333)
++.++..+..++.|+..+-.....+.+
T Consensus 313 ~~~~~~~~~~~l~g~~~~~~~~~~~~~ 339 (420)
T PRK09528 313 TGPLEVSILKLLHAFEVPFLLVGVFKY 339 (420)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555677777665554444333
No 81
>PRK09669 putative symporter YagG; Provisional
Probab=84.50 E-value=16 Score=35.76 Aligned_cols=75 Identities=9% Similarity=-0.059 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhhc
Q 036062 12 YQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGDL 91 (333)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gla 91 (333)
+.++.++...+..++.+|.+.+.....+.++..+....+...+ . ..++..++..++.|++.+..+....++.
T Consensus 273 ~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~i~g~~~~~~~~~~~am~ 344 (444)
T PRK09669 273 GMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIP--P------SNVWLIFALNILFNFIQNLTTPLQWSMF 344 (444)
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC--c------chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555677776554444444433332222222221 1 1123344455566777776666666666
Q ss_pred ccC
Q 036062 92 SFM 94 (333)
Q Consensus 92 ~~~ 94 (333)
+..
T Consensus 345 ad~ 347 (444)
T PRK09669 345 SDV 347 (444)
T ss_pred Hhh
Confidence 543
No 82
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=84.34 E-value=42 Score=32.61 Aligned_cols=95 Identities=15% Similarity=0.060 Sum_probs=48.0
Q ss_pred hhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhh
Q 036062 11 VYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGD 90 (333)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gl 90 (333)
.+.+...+.....-.+.+|+..|.-+..+..+..+..+.... .+ .+...++.-++.|++.+......+..
T Consensus 59 ~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~---a~-------~~~~l~~~r~l~Gi~~~~~~~~~~~~ 128 (413)
T PRK15403 59 LYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF---TT-------SMTQFLIARFIQGTSICFIATVGYVT 128 (413)
T ss_pred HHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH---cC-------CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666778876665555555444433333222 11 13344555666777776655555554
Q ss_pred cc-cCChHH----HHHHHhhhhhhhHHHHH
Q 036062 91 LS-FMYPEF----MQSFFAGLAASGALTSG 115 (333)
Q Consensus 91 a~-~~p~~~----~~a~~~Gqg~aGi~~s~ 115 (333)
.. .+|++. +..+..+.++++++..+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 158 (413)
T PRK15403 129 VQEAFGQTKGIKLMAIITSIVLVAPIIGPL 158 (413)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 456543 23334445555555433
No 83
>PRK10489 enterobactin exporter EntS; Provisional
Probab=83.81 E-value=25 Score=33.96 Aligned_cols=33 Identities=21% Similarity=0.088 Sum_probs=18.3
Q ss_pred HHHHHHHHhhhhHhhccchhhhc-ccCChHHHHH
Q 036062 69 VCVFVALFGVADAHVRGGIVGDL-SFMYPEFMQS 101 (333)
Q Consensus 69 ~l~~v~~~g~~~~~~q~s~~gla-~~~p~~~~~a 101 (333)
..+...+.|.+.+..+....++. ...|+++-..
T Consensus 315 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~ 348 (417)
T PRK10489 315 AVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGR 348 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHH
Confidence 34445556666666555555554 4567775443
No 84
>PF13347 MFS_2: MFS/sugar transport protein
Probab=83.72 E-value=17 Score=35.42 Aligned_cols=83 Identities=13% Similarity=0.078 Sum_probs=55.7
Q ss_pred CceehhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhc
Q 036062 5 TRALTLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVR 84 (333)
Q Consensus 5 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q 84 (333)
.+.+..++.++.++...+..++.+|+..+.-+..++++..+..+.+.+++.. ..+..++...+.|++.+...
T Consensus 262 ~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~~~l~gi~~~~~~ 333 (428)
T PF13347_consen 262 ISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPG--------SPWLVLILFILAGIGYGAFF 333 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHhHhhhcccc
Confidence 3445567788888888888889999977777777887777766666666531 12345566666777777666
Q ss_pred cchhhhcccCC
Q 036062 85 GGIVGDLSFMY 95 (333)
Q Consensus 85 ~s~~gla~~~p 95 (333)
....++-+..-
T Consensus 334 ~~~~a~~ad~i 344 (428)
T PF13347_consen 334 VIPWAMLADVI 344 (428)
T ss_pred cccccccccch
Confidence 65555555433
No 85
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=83.24 E-value=22 Score=32.96 Aligned_cols=75 Identities=8% Similarity=0.128 Sum_probs=39.6
Q ss_pred chHHHHHHHHHHHHHHhhhhhccc-ccccccCcchHHHH-HHHHHHHHHHHHhhhhc--CchhHHHHHHHHHhhhcchhh
Q 036062 246 EWYSLVLIASYNVWDLIARYIPLV-KCVKLESRKGLMIT-ILCRFLLVPAFYFTAKY--GDQGWMIFLTSFLGLTNGYLT 321 (333)
Q Consensus 246 ~w~~~~~~~~fNlgD~iGR~l~~~-~~~~~~~~~~l~~~-~~~R~ifiplf~lc~~~--~~d~~~~i~~~lfgltNGy~~ 321 (333)
+|-..+..-+|..|=++|=+.-+. -+... +||+.... ..+-.+|..+-.+|.+. .+.......+.++|+-.|.+.
T Consensus 140 ~~~~~~~~I~fv~g~~~G~~~ig~~nkt~~-kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~ 218 (267)
T PF07672_consen 140 NWIIPIFQILFVAGYFLGPFTIGLWNKTNY-KRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFL 218 (267)
T ss_pred chhhHHHHHHHHHHHhhhceeeccchhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHH
Confidence 355566677788888888654443 22222 34443332 22345565666666542 233333334666776666554
No 86
>PRK09669 putative symporter YagG; Provisional
Probab=83.19 E-value=48 Score=32.40 Aligned_cols=20 Identities=10% Similarity=0.110 Sum_probs=12.6
Q ss_pred HHHHHHHHHhhhcchhhhhh
Q 036062 305 WMIFLTSFLGLTNGYLTVCV 324 (333)
Q Consensus 305 ~~~i~~~lfgltNGy~~t~~ 324 (333)
..++..+++|+..|-...+.
T Consensus 321 ~~~~~~~i~g~~~~~~~~~~ 340 (444)
T PRK09669 321 LIFALNILFNFIQNLTTPLQ 340 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555677888777655443
No 87
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=82.78 E-value=59 Score=33.10 Aligned_cols=98 Identities=15% Similarity=0.008 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhhc
Q 036062 12 YQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGDL 91 (333)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gla 91 (333)
+...-.++++..-.+.+|+..|.=+..+.+...+..+++++.. .+....++=++.|++.|..-+..--++
T Consensus 71 F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~----------Sl~~L~i~R~llGvaEA~~~A~~syI~ 140 (511)
T TIGR00806 71 LPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT----------SVWHMQLMEVFYSVTMAARIAYSSYIF 140 (511)
T ss_pred HHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555566776666655555555555555544322 244566677778888876665555566
Q ss_pred ccCChHH----HHHHHhhhhhhhHHHHHHHHH
Q 036062 92 SFMYPEF----MQSFFAGLAASGALTSGLRLL 119 (333)
Q Consensus 92 ~~~p~~~----~~a~~~Gqg~aGi~~s~~~ii 119 (333)
..+|++. +.-..+|+.++++++.++--.
T Consensus 141 ~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql 172 (511)
T TIGR00806 141 SLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL 172 (511)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7789553 334456666666666554444
No 88
>PF13347 MFS_2: MFS/sugar transport protein
Probab=82.37 E-value=48 Score=32.19 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=20.1
Q ss_pred HHHHHHHHhhhhHhhccchhhhcccCChH
Q 036062 69 VCVFVALFGVADAHVRGGIVGDLSFMYPE 97 (333)
Q Consensus 69 ~l~~v~~~g~~~~~~q~s~~gla~~~p~~ 97 (333)
..+...+..++-++.|-..-++.+.+.++
T Consensus 106 ~~~~~~l~~~~~t~~~i~~~al~~~lt~~ 134 (428)
T PF13347_consen 106 LFVFYILFDIAYTFVQIPYNALIPELTPD 134 (428)
T ss_pred HHHHHHHHHHhhhhccCchhhcCcccccc
Confidence 35555555888888888877777776643
No 89
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=82.29 E-value=21 Score=27.56 Aligned_cols=79 Identities=16% Similarity=0.050 Sum_probs=43.0
Q ss_pred hhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhh
Q 036062 10 LVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVG 89 (333)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~g 89 (333)
..+.+..++.....-+..+|.+.|..+..+..+..+..+.....+ .++..++...+.|.+.+..+.....
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~g~~~~~~~~~~~~ 74 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS----------NITVLIIARFLQGFGAAFALVAGAA 74 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc----------cHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 345566666666666667777655555445444433333322211 1334455566777777776666666
Q ss_pred hccc-CChHH
Q 036062 90 DLSF-MYPEF 98 (333)
Q Consensus 90 la~~-~p~~~ 98 (333)
+... +|++.
T Consensus 75 ~~~~~~~~~~ 84 (141)
T TIGR00880 75 LIADIYPPEE 84 (141)
T ss_pred HHHHHCChhh
Confidence 5444 55443
No 90
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=81.48 E-value=55 Score=31.87 Aligned_cols=94 Identities=11% Similarity=-0.016 Sum_probs=46.2
Q ss_pred HHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhhccc-CChH--
Q 036062 21 AILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGDLSF-MYPE-- 97 (333)
Q Consensus 21 ~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gla~~-~p~~-- 97 (333)
++.-.+.+|+..|.=+..+.++..+.++...+.+... ..+...+...++.=.+.|++.+........+.+. .|++
T Consensus 81 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~r 158 (432)
T PRK10406 81 WLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYE--TIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRK 158 (432)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCch--hHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcc
Confidence 3333456776555545555555555554433332110 0001122334455567777777666666666664 4644
Q ss_pred --HHHHHHhhhhhhhHHHHHH
Q 036062 98 --FMQSFFAGLAASGALTSGL 116 (333)
Q Consensus 98 --~~~a~~~Gqg~aGi~~s~~ 116 (333)
+......|+..+.++..++
T Consensus 159 g~~~~~~~~~~~~G~~~~~~~ 179 (432)
T PRK10406 159 GFYASFQYVTLIGGQLLALLV 179 (432)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555544544443
No 91
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=81.10 E-value=35 Score=34.38 Aligned_cols=81 Identities=12% Similarity=0.156 Sum_probs=50.9
Q ss_pred HhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhhcccCChHHHHHHH
Q 036062 24 AYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGDLSFMYPEFMQSFF 103 (333)
Q Consensus 24 ~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gla~~~p~~~~~a~~ 103 (333)
.++.+|.+...|+..|+++..+....+........ ..+....+..+...++.|++..+.....++++...-|+..++.+
T Consensus 341 ~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~-~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~ 419 (500)
T PRK09584 341 NKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFAN-DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFI 419 (500)
T ss_pred HHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHH
Confidence 45566777778888888887666655544432211 11122233566677778999999999999988777555444444
Q ss_pred hh
Q 036062 104 AG 105 (333)
Q Consensus 104 ~G 105 (333)
.|
T Consensus 420 ~g 421 (500)
T PRK09584 420 MG 421 (500)
T ss_pred HH
Confidence 33
No 92
>PRK11010 ampG muropeptide transporter; Validated
Probab=80.99 E-value=64 Score=32.32 Aligned_cols=51 Identities=10% Similarity=-0.043 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhhhhHhhccchhhhccc-CChH----HHHHHHhhhhhhhHHHHHH
Q 036062 66 FLGVCVFVALFGVADAHVRGGIVGDLSF-MYPE----FMQSFFAGLAASGALTSGL 116 (333)
Q Consensus 66 f~~~l~~v~~~g~~~~~~q~s~~gla~~-~p~~----~~~a~~~Gqg~aGi~~s~~ 116 (333)
++...+..++.+++.+..+-..-++... +|++ .....+.|..++.++...+
T Consensus 107 l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l 162 (491)
T PRK11010 107 LRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGL 162 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556676776666555565544 5533 3444566677676666543
No 93
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=80.41 E-value=66 Score=32.10 Aligned_cols=80 Identities=13% Similarity=0.078 Sum_probs=46.2
Q ss_pred ceehhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhcc
Q 036062 6 RALTLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRG 85 (333)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~ 85 (333)
+|...+|.+.....+...-++.+|...|.=+..+..+..+..++.. ..+ .++..++.-.+.|++.+....
T Consensus 44 ~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~---~a~-------~~~~li~~r~l~G~g~~~~~~ 113 (495)
T PRK14995 44 LWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAA---FSP-------TASWLIATRALLAIGAAMIVP 113 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH---HcC-------CHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777666777887665545555555444333322 221 133455555677887777766
Q ss_pred chhh-hcccCC
Q 036062 86 GIVG-DLSFMY 95 (333)
Q Consensus 86 s~~g-la~~~p 95 (333)
.... +...++
T Consensus 114 ~~~~~l~~~~~ 124 (495)
T PRK14995 114 ATLAGIRATFT 124 (495)
T ss_pred HHHHHHHHHcC
Confidence 5555 445563
No 94
>PRK03893 putative sialic acid transporter; Provisional
Probab=78.65 E-value=21 Score=35.16 Aligned_cols=22 Identities=14% Similarity=-0.117 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHhhhccCCCc
Q 036062 12 YQPFALGTMAILAYNESKIDTR 33 (333)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~~~~ 33 (333)
+.+...+...+.-.+.+|...+
T Consensus 320 ~~~~~~~g~~~~g~l~dr~g~~ 341 (496)
T PRK03893 320 SGFGAAVGCCVGGFLGDWLGTR 341 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhcch
Confidence 3444444445555556665444
No 95
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=78.65 E-value=43 Score=33.65 Aligned_cols=65 Identities=6% Similarity=-0.000 Sum_probs=34.3
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhhccc-CChHH
Q 036062 34 KRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGDLSF-MYPEF 98 (333)
Q Consensus 34 ~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gla~~-~p~~~ 98 (333)
.|+..|+++..+.++.+..........++....+.....-++.|++..+.....+..+.. -|+++
T Consensus 347 ~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~ 412 (489)
T PRK10207 347 MKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL 412 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH
Confidence 367778777655544432221100011112223344456667788888877777776655 45555
No 96
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=78.04 E-value=19 Score=36.43 Aligned_cols=116 Identities=9% Similarity=0.002 Sum_probs=70.4
Q ss_pred eehhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCc-chHHHHHHHHHHHhhhhHhhcc
Q 036062 7 ALTLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGL-GPFLGVCVFVALFGVADAHVRG 85 (333)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~f~~~l~~v~~~g~~~~~~q~ 85 (333)
+.+..-...++++.+....+.+|...|..++.++.++.+..+++.....-....... .++.+..++..+.+.+.|.---
T Consensus 309 ~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi 388 (485)
T KOG0569|consen 309 YANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPI 388 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCch
Confidence 445566677788888888999999999999999888766665544443221111011 1222333344444555554444
Q ss_pred chhhhcccCChHHHHHHHhhhhhhhHHHHHHHHHHHhhcc
Q 036062 86 GIVGDLSFMYPEFMQSFFAGLAASGALTSGLRLLTKAAFE 125 (333)
Q Consensus 86 s~~gla~~~p~~~~~a~~~Gqg~aGi~~s~~~ii~~~~~~ 125 (333)
..+=-+=++|++.-.+ =|++++....+.++++...++
T Consensus 389 ~~fi~aELf~~~~R~a---a~s~~~~~~w~~~fiv~~~fp 425 (485)
T KOG0569|consen 389 PWFIGAELFPQSARSA---AQSVATAVNWLSNFIVGFAFP 425 (485)
T ss_pred hHHHHHHhCCccchHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 5555556677655444 346777777888887776665
No 97
>PRK11462 putative transporter; Provisional
Probab=77.67 E-value=28 Score=34.58 Aligned_cols=28 Identities=11% Similarity=-0.242 Sum_probs=17.3
Q ss_pred ehhhhhHHHHHHHHHHHhhhccCCCccc
Q 036062 8 LTLVYQPFALGTMAILAYNESKIDTRKR 35 (333)
Q Consensus 8 ~~~~~~~~~l~~~~~~~~~~~~~~~~~R 35 (333)
+..++.+++++...+...+.+|...|..
T Consensus 268 ~l~~~~i~~iig~~l~~~l~~r~gkk~~ 295 (460)
T PRK11462 268 FLTTYCVGNLIGSALAKPLTDWKCKVTI 295 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence 3445566666666667777777654433
No 98
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=77.16 E-value=43 Score=35.78 Aligned_cols=95 Identities=13% Similarity=-0.051 Sum_probs=47.5
Q ss_pred hhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhh
Q 036062 11 VYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGD 90 (333)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gl 90 (333)
...+..+...++.-.+..|+..+.=+..++++..+.++++...+. . ...++...+.|++.+...++.+++
T Consensus 603 l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s--------~--~~ll~~~~l~g~~~~~~~~~~~a~ 672 (742)
T TIGR01299 603 LGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNS--------E--SAMIALLCLFGGLSIAAWNALDVL 672 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcc--------H--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677777777776444444444444444444332221 1 112333345566665666777777
Q ss_pred ccc-CChHH----HHHHHhhhhhhhHHHHH
Q 036062 91 LSF-MYPEF----MQSFFAGLAASGALTSG 115 (333)
Q Consensus 91 a~~-~p~~~----~~a~~~Gqg~aGi~~s~ 115 (333)
.+. +|.+. +.....+..+++++...
T Consensus 673 ~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~ 702 (742)
T TIGR01299 673 TVELYPSDKRATAFGFLNALCKAAAVLGIL 702 (742)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665 67543 22233344455555443
No 99
>PRK15075 citrate-proton symporter; Provisional
Probab=76.82 E-value=76 Score=30.86 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=19.5
Q ss_pred HHHHhhhccCCCccchHHHHHHHHHHHHHHHH
Q 036062 21 AILAYNESKIDTRKRNITGYIIFFASTLALLL 52 (333)
Q Consensus 21 ~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~ 52 (333)
++.-.+.+|+..|.-+..+..+..+..++..+
T Consensus 74 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~ 105 (434)
T PRK15075 74 IVLGAYIDRVGRRKGLIVTLSIMASGTLLIAF 105 (434)
T ss_pred HHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh
Confidence 44456677887777666666665555544433
No 100
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=75.91 E-value=87 Score=31.04 Aligned_cols=33 Identities=6% Similarity=-0.081 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHhhhccCCCccchHHHHHHHHH
Q 036062 13 QPFALGTMAILAYNESKIDTRKRNITGYIIFFA 45 (333)
Q Consensus 13 ~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~ 45 (333)
+-+.+..++....+.+.+.+|.=++.+-+..++
T Consensus 51 tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~ 83 (412)
T PF01770_consen 51 TYSYLAFLLPVFLLTDYLRYKPVIILQALSYII 83 (412)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 334445555555556666777655554444333
No 101
>PRK03893 putative sialic acid transporter; Provisional
Probab=75.78 E-value=85 Score=30.87 Aligned_cols=94 Identities=11% Similarity=0.052 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhh-
Q 036062 12 YQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGD- 90 (333)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gl- 90 (333)
+.+...+.....-.+.+|...|.-+..+.++..+..+.....+ .++..++...+.|++.+..+.....+
T Consensus 64 ~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----------~~~~l~~~~~l~G~~~~~~~~~~~~~~ 133 (496)
T PRK03893 64 AFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAP----------GYWTLFIARLVIGMGMAGEYGSSATYV 133 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555556667777655544545544444333333221 13345556666777766655555554
Q ss_pred cccCChHHH----HHHHhhhhhhhHHHHH
Q 036062 91 LSFMYPEFM----QSFFAGLAASGALTSG 115 (333)
Q Consensus 91 a~~~p~~~~----~a~~~Gqg~aGi~~s~ 115 (333)
...+|++.- .....|.++++++...
T Consensus 134 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 162 (496)
T PRK03893 134 IESWPKHLRNKASGFLISGFSIGAVVAAQ 162 (496)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666543 3344555555555443
No 102
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=74.12 E-value=1e+02 Score=31.08 Aligned_cols=51 Identities=16% Similarity=0.045 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhhhHhhccchhhhcccC-ChH--H---HHH-HHhhhhhhhHHHHHHH
Q 036062 67 LGVCVFVALFGVADAHVRGGIVGDLSFM-YPE--F---MQS-FFAGLAASGALTSGLR 117 (333)
Q Consensus 67 ~~~l~~v~~~g~~~~~~q~s~~gla~~~-p~~--~---~~a-~~~Gqg~aGi~~s~~~ 117 (333)
+..++...+..++....|+..-++.+.. |++ . ..+ .....++++++..++-
T Consensus 115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g 172 (477)
T TIGR01301 115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAG 172 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566778888888888887774 433 2 222 2234455555554433
No 103
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=73.67 E-value=87 Score=30.03 Aligned_cols=130 Identities=14% Similarity=0.071 Sum_probs=65.9
Q ss_pred hhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhh
Q 036062 11 VYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGD 90 (333)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gl 90 (333)
++.+...+..+..-.+.+|.. |.|+..+.....+...+ .. ... ..|...++.-++.|++.+....+...+
T Consensus 34 ~~~~g~~i~~~~~G~l~Dr~g-rr~~~~~~~~~~~~~~~--~~-~~~------~~~~~l~~~R~l~G~g~~~~~~~~~~~ 103 (368)
T TIGR00903 34 TYPAAFLALTIPSGLLLDRAF-KRWFLFGSLATFAAAAG--RL-LDP------FNYEWLLACQLLAALGQPFLLNAFAPA 103 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHH--HH-HHh------ccHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 344445555566666777775 44554443333222211 01 110 124556666667787777655555556
Q ss_pred cccCChHH----HHHHHhhhhhhhHHHHHHHHHHHhhccCCccccchhhhHHhHHHHHHHHHHHHHHHHHcCC
Q 036062 91 LSFMYPEF----MQSFFAGLAASGALTSGLRLLTKAAFEKSHDGLRKGVMLFLAICTSFEFVCILLYAFFFPK 159 (333)
Q Consensus 91 a~~~p~~~----~~a~~~Gqg~aGi~~s~~~ii~~~~~~~~~~~~~~s~~iyF~~a~~~~~~~~~~~~~~l~k 159 (333)
+..+|++. +.-+..|+++++++..++--... +. .+ +. ..|+..+.+..+.++..+. .++.
T Consensus 104 ~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~---~~--~g--Wr-~~f~~~~~l~~~~~~~~~~-~lp~ 167 (368)
T TIGR00903 104 ASQIREERRDLVISLLSFAMYLGIIFALAAGLKIY---TA--GG--LQ-LLIIPIAAVAAAGIILVLA-ALPA 167 (368)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hc--cc--hH-HHHHHHHHHHHHHHHHHHH-HcCC
Confidence 77788543 44444666777776654433221 11 11 22 2344445555555565565 4544
No 104
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=73.47 E-value=99 Score=30.55 Aligned_cols=75 Identities=19% Similarity=0.118 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHhhhhhcccccccccCcch-HHHHHHHHHHHHHHHHhhhhcCchhHHHHHHHHHhhhcchhhhh
Q 036062 249 SLVLIASYNVWDLIARYIPLVKCVKLESRKG-LMITILCRFLLVPAFYFTAKYGDQGWMIFLTSFLGLTNGYLTVC 323 (333)
Q Consensus 249 ~~~~~~~fNlgD~iGR~l~~~~~~~~~~~~~-l~~~~~~R~ifiplf~lc~~~~~d~~~~i~~~lfgltNGy~~t~ 323 (333)
..-+...++.|-++|-.++++...+..+++. ..+.+..=.+-.-+.+++....+++.+-.-++++|+.||.++.-
T Consensus 246 TT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vg 321 (403)
T PF03209_consen 246 TTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVG 321 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHH
Confidence 3456778888988888887774333222322 22222222222223344444566666777799999999998754
No 105
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=72.96 E-value=35 Score=34.02 Aligned_cols=7 Identities=0% Similarity=-0.002 Sum_probs=4.5
Q ss_pred cCChHHH
Q 036062 93 FMYPEFM 99 (333)
Q Consensus 93 ~~p~~~~ 99 (333)
.+|++.-
T Consensus 370 ~~p~~~R 376 (490)
T PRK10642 370 MFPTHIR 376 (490)
T ss_pred HCCCccc
Confidence 6787643
No 106
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=72.47 E-value=99 Score=30.16 Aligned_cols=42 Identities=12% Similarity=0.050 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHH
Q 036062 12 YQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLL 53 (333)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~ 53 (333)
..+.+++...+.-.+.+|...|.-++.+.+++.+..+.+...
T Consensus 315 ~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~ 356 (479)
T PRK10077 315 VGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTA 356 (479)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHH
Confidence 334445555556666777776666666666666655554433
No 107
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=71.85 E-value=79 Score=29.61 Aligned_cols=30 Identities=13% Similarity=-0.014 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHhhhccCCCccchHHHHHH
Q 036062 13 QPFALGTMAILAYNESKIDTRKRNITGYII 42 (333)
Q Consensus 13 ~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~ 42 (333)
.+...+...+..+..+|...+..+..+..+
T Consensus 240 ~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~ 269 (377)
T PRK11102 240 IVFLFVMTIINSRFVRRVGALNMLRFGLWI 269 (377)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 334444455556666676555444445444
No 108
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=71.62 E-value=50 Score=32.59 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=16.0
Q ss_pred HHHHHHHHhhhhHhhccchhhhcc-cCChHH
Q 036062 69 VCVFVALFGVADAHVRGGIVGDLS-FMYPEF 98 (333)
Q Consensus 69 ~l~~v~~~g~~~~~~q~s~~gla~-~~p~~~ 98 (333)
..+...+.|++.+......+.+.. ..|++.
T Consensus 336 ~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~ 366 (455)
T TIGR00892 336 LVIYCIFFGLSFGSVGALLFEVLMDLVGAQR 366 (455)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhhHHH
Confidence 344455556666555555555544 346544
No 109
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=70.69 E-value=64 Score=29.29 Aligned_cols=82 Identities=13% Similarity=0.072 Sum_probs=46.9
Q ss_pred hhhhhHHHHHHHHHHHhhhccCCCcc-chHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccch
Q 036062 9 TLVYQPFALGTMAILAYNESKIDTRK-RNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGI 87 (333)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~~~~~~-Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~ 87 (333)
...+.+...+...+..+..+|.+.+. .+..+..+..+..+.+...+ .++...+...+.|++.+..+...
T Consensus 217 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~~~g~~~~~~~~~~ 286 (352)
T cd06174 217 LSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP----------SLALLLVALLLLGFGLGFAFPAL 286 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc----------cHHHHHHHHHHHHHHHhccchhH
Confidence 34445555566666666677776666 44445555444444333221 13445566777788888777777
Q ss_pred hhhcccC-ChHHHH
Q 036062 88 VGDLSFM-YPEFMQ 100 (333)
Q Consensus 88 ~gla~~~-p~~~~~ 100 (333)
..+.... |++...
T Consensus 287 ~~~~~~~~~~~~~~ 300 (352)
T cd06174 287 LTLASELAPPEARG 300 (352)
T ss_pred HHHHHhhcCHHHHH
Confidence 7776664 444433
No 110
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=69.53 E-value=79 Score=29.99 Aligned_cols=34 Identities=12% Similarity=0.162 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHhhhccCCCccchHHHHHHHHH
Q 036062 12 YQPFALGTMAILAYNESKIDTRKRNITGYIIFFA 45 (333)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~ 45 (333)
+.+..++......++.+|++.+..+..++++..+
T Consensus 248 ~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~ 281 (392)
T PRK10473 248 TAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLA 281 (392)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3444455556666667777655444445544433
No 111
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=69.52 E-value=1.1e+02 Score=29.40 Aligned_cols=75 Identities=12% Similarity=0.100 Sum_probs=39.5
Q ss_pred hhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhh
Q 036062 10 LVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVG 89 (333)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~g 89 (333)
..+.++.++...+..++.+|+..+..+..+.++..+..+.+...+ . ..+..++...+.|++.+..+....+
T Consensus 264 ~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 264 SIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG--S-------NLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc--h-------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666677778887766555556555444333332221 0 1122334445556666666655555
Q ss_pred hccc
Q 036062 90 DLSF 93 (333)
Q Consensus 90 la~~ 93 (333)
+.+.
T Consensus 335 ~~~~ 338 (437)
T TIGR00792 335 LVAD 338 (437)
T ss_pred HHhh
Confidence 5544
No 112
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=68.49 E-value=78 Score=30.25 Aligned_cols=41 Identities=7% Similarity=0.028 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHH
Q 036062 11 VYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALL 51 (333)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~ 51 (333)
...+...+..++.-.+.+|...+..+..++++..+.++++.
T Consensus 327 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 367 (481)
T TIGR00879 327 IVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLG 367 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 33444555556666677777766666666666555544444
No 113
>PRK10504 putative transporter; Provisional
Probab=67.91 E-value=1.3e+02 Score=29.50 Aligned_cols=81 Identities=14% Similarity=0.086 Sum_probs=40.3
Q ss_pred ehhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccch
Q 036062 8 LTLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGI 87 (333)
Q Consensus 8 ~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~ 87 (333)
....+.+...+...+.-++.+|...|.-+..++.+..+..+... ..+ .+...++.-.+.|++.+......
T Consensus 50 ~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~---~~~-------~~~~l~~~~~l~g~~~~~~~~~~ 119 (471)
T PRK10504 50 VIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCA---LSG-------TLNELLLARVLQGVGGAMMVPVG 119 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH---HhC-------CHHHHHHHHHHHHhhhHHHHHHH
Confidence 33445555555666666677776655434434444333222211 111 12233445566677766665555
Q ss_pred hhh-cccCChHH
Q 036062 88 VGD-LSFMYPEF 98 (333)
Q Consensus 88 ~gl-a~~~p~~~ 98 (333)
..+ ...+|++.
T Consensus 120 ~~~~~~~~~~~~ 131 (471)
T PRK10504 120 RLTVMKIVPREQ 131 (471)
T ss_pred HHHHHHHcCHHH
Confidence 554 34567654
No 114
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=66.37 E-value=1.2e+02 Score=28.79 Aligned_cols=118 Identities=8% Similarity=-0.031 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhhcc
Q 036062 13 QPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGDLS 92 (333)
Q Consensus 13 ~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gla~ 92 (333)
.+..++...+.-++.+|.+.+.-+..+.+...+-...+...+ ..+..+....+-|+.-++...+.+.+..
T Consensus 250 ~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~----------~~~~~~~~q~l~g~~~~~~~~~~~~~i~ 319 (382)
T TIGR00902 250 VLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIE----------AFPLIFLLQILHCGTFAVCHLAAMRYIA 319 (382)
T ss_pred HHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555666777666555555555444333332211 1234455567777777888888888888
Q ss_pred cCChHHH---HHHH--hhhhhhhHHHHHHHHHHHhhccCCccccchhhhHHhHHHHHHHHHH
Q 036062 93 FMYPEFM---QSFF--AGLAASGALTSGLRLLTKAAFEKSHDGLRKGVMLFLAICTSFEFVC 149 (333)
Q Consensus 93 ~~p~~~~---~a~~--~Gqg~aGi~~s~~~ii~~~~~~~~~~~~~~s~~iyF~~a~~~~~~~ 149 (333)
..|++.. |++. .+.|+++.+. .++.-...+. .+...|+..+.+..+..
T Consensus 320 ~~~~~~~~~~q~~~~~~~~g~g~~~g---~~~~G~l~~~------~g~~~~~~~~~~~~~~~ 372 (382)
T TIGR00902 320 AQPGSEIAKLQALYNALAMGGLIAIF---TAFAGFIYPT------LGAGTFVFMAIIAAAAF 372 (382)
T ss_pred hCCHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh------ccHHHHHHHHHHHHHHH
Confidence 8876554 3332 1233333333 3333333211 23455777777665443
No 115
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=64.91 E-value=1.3e+02 Score=28.66 Aligned_cols=33 Identities=21% Similarity=0.015 Sum_probs=15.5
Q ss_pred HHHHHHHhhhccCCCccchHHHHHHHHHHHHHH
Q 036062 18 GTMAILAYNESKIDTRKRNITGYIIFFASTLAL 50 (333)
Q Consensus 18 ~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~ 50 (333)
+...+.-++.+|.+.+.-+..+.+...+.+..+
T Consensus 266 ~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~ 298 (406)
T PRK15402 266 AGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLA 298 (406)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 334444555566655443444444443333333
No 116
>PRK03633 putative MFS family transporter protein; Provisional
Probab=63.97 E-value=1.3e+02 Score=28.41 Aligned_cols=64 Identities=19% Similarity=0.160 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhc
Q 036062 11 VYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVR 84 (333)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q 84 (333)
.+.+...+...+.-.+.+|...|..+..+.++..+........+ .++..++.-++.|++.+...
T Consensus 49 ~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~----------~~~~l~~~~~l~G~~~~~~~ 112 (381)
T PRK03633 49 SYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMV----------GFWSWLAWRFVAGIGCAMIW 112 (381)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------cHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666666776665555555555444333322211 13344555566676665544
No 117
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=63.65 E-value=1.3e+02 Score=28.07 Aligned_cols=80 Identities=11% Similarity=0.016 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhhc
Q 036062 12 YQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGDL 91 (333)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gla 91 (333)
+.+..++...+.-+..+|.+.+..+..+..+..+....+....... ........+...+.|.+.+.........+
T Consensus 251 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 325 (385)
T TIGR00710 251 NIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILG-----LGSWAMIIGPMMFVGIGNSMISSIAMAYA 325 (385)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666677777666655556555444443333332211 11122333344455666665555555554
Q ss_pred cc-CCh
Q 036062 92 SF-MYP 96 (333)
Q Consensus 92 ~~-~p~ 96 (333)
.. .|+
T Consensus 326 ~~~~~~ 331 (385)
T TIGR00710 326 LEDFPH 331 (385)
T ss_pred hccCcc
Confidence 43 343
No 118
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=63.54 E-value=1.4e+02 Score=28.59 Aligned_cols=77 Identities=14% Similarity=0.090 Sum_probs=43.0
Q ss_pred ehhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccch
Q 036062 8 LTLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGI 87 (333)
Q Consensus 8 ~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~ 87 (333)
...+|.++..+...+.=.+.+|.+.|.=+..+..+..+..+..... . . . ++.-++.|++.+......
T Consensus 43 ~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~---~-----~-~----~~~r~l~G~~~a~~~pa~ 109 (393)
T PRK11195 43 LQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG---I-----H-P----LLAYGLVGIGAAAYSPAK 109 (393)
T ss_pred HHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH---H-----H-H----HHHHHHHHHHHHHHHHHH
Confidence 3445566666666666667777766665555555543333222111 1 0 1 233356788888888887
Q ss_pred hhhccc-CChH
Q 036062 88 VGDLSF-MYPE 97 (333)
Q Consensus 88 ~gla~~-~p~~ 97 (333)
.++... +|++
T Consensus 110 ~a~i~~~~~~~ 120 (393)
T PRK11195 110 YGILTELLPGE 120 (393)
T ss_pred HHHHHHHcCHH
Confidence 777655 6644
No 119
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=63.48 E-value=1.4e+02 Score=28.55 Aligned_cols=84 Identities=12% Similarity=0.111 Sum_probs=42.3
Q ss_pred hhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchh-
Q 036062 10 LVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIV- 88 (333)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~- 88 (333)
..+.++..+...+.-.+.+|...|.-+..+..+..+..+......... ..++..++...+.|++.+.......
T Consensus 55 ~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~i~G~g~~~~~~~~~~ 128 (402)
T TIGR00897 55 TLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGH------ANYPLILLFYGIRGLGYPLFAYSFLV 128 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccC------ccHHHHHHHHHHHHcchHHHHhHHHH
Confidence 345556666666667777887776666666666555443332222111 1123333444455665554333322
Q ss_pred hhcccCChHHH
Q 036062 89 GDLSFMYPEFM 99 (333)
Q Consensus 89 gla~~~p~~~~ 99 (333)
.....+|++..
T Consensus 129 ~~~~~~~~~~~ 139 (402)
T TIGR00897 129 WVVYNTKQDNL 139 (402)
T ss_pred HHHHhCCHHHH
Confidence 23445676543
No 120
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=62.48 E-value=1.5e+02 Score=28.80 Aligned_cols=80 Identities=6% Similarity=-0.105 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhh-c
Q 036062 13 QPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGD-L 91 (333)
Q Consensus 13 ~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gl-a 91 (333)
++.........-++.+|++.|.-+..++++..+...++...+ . ....++...+...+.|++.+........+ +
T Consensus 261 ~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~--~----~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~ 334 (418)
T TIGR00889 261 QFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGD--P----EYFGYALLFLSMIVYGCAFDFFNISGSVFVE 334 (418)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC--c----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455556677777666655556555544433332211 1 01123334445566676666666665555 4
Q ss_pred ccCChHH
Q 036062 92 SFMYPEF 98 (333)
Q Consensus 92 ~~~p~~~ 98 (333)
-.+|++.
T Consensus 335 ~~~p~~~ 341 (418)
T TIGR00889 335 KEVPVHI 341 (418)
T ss_pred HHCCHHH
Confidence 4678663
No 121
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=61.61 E-value=1.1e+02 Score=33.72 Aligned_cols=82 Identities=11% Similarity=-0.072 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhhc
Q 036062 12 YQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGDL 91 (333)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gla 91 (333)
+.+..+++.++.-++.+|...+..+..+.++..+.++.+.... ..+..++..++.|++.+........+.
T Consensus 278 ~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~g~~~~~~~~~~~~~~ 347 (1146)
T PRK08633 278 SAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP----------SLASVLVLFFLFGFSAGLFIVPLNALI 347 (1146)
T ss_pred HHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh----------hHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3444445555556666665544444445444443333322211 123445556666777766666655555
Q ss_pred cc-CChHHHHHHH
Q 036062 92 SF-MYPEFMQSFF 103 (333)
Q Consensus 92 ~~-~p~~~~~a~~ 103 (333)
.. .|++.....+
T Consensus 348 ~~~~p~~~rg~~~ 360 (1146)
T PRK08633 348 QFRAPEKELGKVL 360 (1146)
T ss_pred hhcCCccchhhhh
Confidence 43 4665544433
No 122
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=60.92 E-value=1.9e+02 Score=29.12 Aligned_cols=74 Identities=12% Similarity=0.125 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhhhhhcccccccccCcc--hHHHHHHHHHHHHHHHHhh----hh--cCchhHHHHHHHHHhhhcchh
Q 036062 249 SLVLIASYNVWDLIARYIPLVKCVKLESRK--GLMITILCRFLLVPAFYFT----AK--YGDQGWMIFLTSFLGLTNGYL 320 (333)
Q Consensus 249 ~~~~~~~fNlgD~iGR~l~~~~~~~~~~~~--~l~~~~~~R~ifiplf~lc----~~--~~~d~~~~i~~~lfgltNGy~ 320 (333)
.....++=|+.-.+|-.+..+..-+. ++| ..+..++.=...+|+.-+- +. .++.+-++++-++.|+..|-.
T Consensus 319 l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~ 397 (477)
T PF11700_consen 319 LIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGI 397 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhH
Confidence 45667777788888877776643322 233 4444444444455555432 11 457777888888999998865
Q ss_pred hhh
Q 036062 321 TVC 323 (333)
Q Consensus 321 ~t~ 323 (333)
-+.
T Consensus 398 qs~ 400 (477)
T PF11700_consen 398 QSA 400 (477)
T ss_pred HHH
Confidence 443
No 123
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=59.93 E-value=99 Score=29.78 Aligned_cols=26 Identities=8% Similarity=-0.090 Sum_probs=11.5
Q ss_pred HHHHhhhhHhhccchhhhccc-CChHH
Q 036062 73 VALFGVADAHVRGGIVGDLSF-MYPEF 98 (333)
Q Consensus 73 v~~~g~~~~~~q~s~~gla~~-~p~~~ 98 (333)
..+.+.+.+........+... .|++.
T Consensus 304 ~~l~~~g~~~~~p~~~~~~~~~~p~~~ 330 (400)
T PRK11646 304 ICLFYIGSIIAEPARETLSASLADARA 330 (400)
T ss_pred HHHHHHHHHHHHccHHHHHHhcCCccc
Confidence 334455555554444444433 45433
No 124
>PRK09952 shikimate transporter; Provisional
Probab=59.67 E-value=1.8e+02 Score=28.41 Aligned_cols=27 Identities=11% Similarity=-0.036 Sum_probs=14.4
Q ss_pred HHHHHhhhhHhhccchhhhccc-CChHH
Q 036062 72 FVALFGVADAHVRGGIVGDLSF-MYPEF 98 (333)
Q Consensus 72 ~v~~~g~~~~~~q~s~~gla~~-~p~~~ 98 (333)
...+.+++.+...+....+.+. +|.++
T Consensus 349 ~~~l~~~~~~~~~~~~~~~~~e~~p~~~ 376 (438)
T PRK09952 349 SIMLANIAHDMVVCVQQPMFTEMFGASY 376 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCcch
Confidence 3344455555555555555444 77665
No 125
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=59.56 E-value=1.9e+02 Score=28.80 Aligned_cols=85 Identities=9% Similarity=0.009 Sum_probs=47.5
Q ss_pred hhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhh
Q 036062 11 VYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGD 90 (333)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gl 90 (333)
.+.+..+++.++.-.+..++..|.=.+.++.+.++.-+..++. ..|...+++=++.|++.+-.....+++
T Consensus 126 ~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a----------~~~~~~~~~Rfl~G~~~~~~~~~~~~~ 195 (521)
T KOG0255|consen 126 LFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA----------PNYWMFLIFRFLSGFFGSGPLTVGFGL 195 (521)
T ss_pred HHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh----------CcHHHHHHHHHHHHhhccchhHHhHhh
Confidence 3444555555555556666444444444555544444332221 235567778888888887666666666
Q ss_pred ccc-CChHHHHHHHhh
Q 036062 91 LSF-MYPEFMQSFFAG 105 (333)
Q Consensus 91 a~~-~p~~~~~a~~~G 105 (333)
.+. +++++-.-.++-
T Consensus 196 ~~E~~~~~~R~~~~~~ 211 (521)
T KOG0255|consen 196 VAEIVSPKQRGLALTL 211 (521)
T ss_pred heeecCcchhhHHHHH
Confidence 655 666665544433
No 126
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=59.15 E-value=1.1e+02 Score=29.00 Aligned_cols=78 Identities=13% Similarity=0.024 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhhc
Q 036062 12 YQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGDL 91 (333)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gla 91 (333)
+.+..++..++.-.+.+|...+..+..+++...+.+..+. ..+ . .+...+...+.|++.+..++..++++
T Consensus 264 ~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~---~~~----~---~~~~~~~~~~~g~~~~~~~~~~~~~~ 333 (406)
T PRK11551 264 FNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALA---AAP----S---FAGMLLAGFAAGLFVVGGQSVLYALA 333 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---hcC----c---HHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4445555556666666666544333333333322222221 111 0 11222334445555555555566654
Q ss_pred cc-CChHHH
Q 036062 92 SF-MYPEFM 99 (333)
Q Consensus 92 ~~-~p~~~~ 99 (333)
.. +|++..
T Consensus 334 ~~~~p~~~~ 342 (406)
T PRK11551 334 PLFYPTQVR 342 (406)
T ss_pred HHHcchhhh
Confidence 44 566553
No 127
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=58.81 E-value=2.1e+02 Score=29.03 Aligned_cols=108 Identities=14% Similarity=-0.043 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHHHhhh-ccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhh-Hhhccchhh
Q 036062 12 YQPFALGTMAILAYNE-SKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVAD-AHVRGGIVG 89 (333)
Q Consensus 12 ~~~~~l~~~~~~~~~~-~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~-~~~q~s~~g 89 (333)
+.+...++..+--.+. ++-+.+.-++.|+++.++.-++...++..++ . .=+..|+.=++.|++. +..--=.|.
T Consensus 80 ~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~----~-~~y~mL~~R~l~Gvg~~n~a~lR~Y~ 154 (488)
T KOG2325|consen 80 SSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPN----G-VKYLMLVARILTGVGVGNFAVLRAYI 154 (488)
T ss_pred HHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhccc----c-hHHHHHHHHHHcCcCcccHHHHHHHH
Confidence 3444444443333333 3344566688888888888888767766542 1 2345677667777663 222222333
Q ss_pred hcccCChHHHHHH---HhhhhhhhHHHHHHHHHHHhhc
Q 036062 90 DLSFMYPEFMQSF---FAGLAASGALTSGLRLLTKAAF 124 (333)
Q Consensus 90 la~~~p~~~~~a~---~~Gqg~aGi~~s~~~ii~~~~~ 124 (333)
-++..+++=..|+ ..|+.++=++...++.+.....
T Consensus 155 a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg 192 (488)
T KOG2325|consen 155 ADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLG 192 (488)
T ss_pred HhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhc
Confidence 3444454434443 3445566666677776655443
No 128
>TIGR00898 2A0119 cation transport protein.
Probab=58.73 E-value=1.9e+02 Score=28.49 Aligned_cols=74 Identities=8% Similarity=-0.098 Sum_probs=33.4
Q ss_pred HHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhhccc-CCh
Q 036062 18 GTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGDLSF-MYP 96 (333)
Q Consensus 18 ~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gla~~-~p~ 96 (333)
...++.....+|+..|..+..++++..+..+++...+. .. .+..++...+.+++.+...+..+.+.+. +|+
T Consensus 370 ~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 441 (505)
T TIGR00898 370 PAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPV-------DL-YFLRTALAVLGKFGITSAFQMVYLYTAELYPT 441 (505)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCC-------Cc-hHHHHHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence 34445555667766555555555554444443333321 11 1122223333344444444455555544 676
Q ss_pred HHH
Q 036062 97 EFM 99 (333)
Q Consensus 97 ~~~ 99 (333)
+.-
T Consensus 442 ~~r 444 (505)
T TIGR00898 442 VVR 444 (505)
T ss_pred HHH
Confidence 543
No 129
>PTZ00207 hypothetical protein; Provisional
Probab=58.38 E-value=1.1e+02 Score=31.74 Aligned_cols=122 Identities=18% Similarity=0.213 Sum_probs=57.1
Q ss_pred hhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhc-cchhhhcccCChH---HHH
Q 036062 25 YNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVR-GGIVGDLSFMYPE---FMQ 100 (333)
Q Consensus 25 ~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q-~s~~gla~~~p~~---~~~ 100 (333)
.+.+|...|.=+..+.++..+..++........ . ...++..++.-++.|.+.+... ++.......||++ .+.
T Consensus 83 ~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~-i---~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~G 158 (591)
T PTZ00207 83 FIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEV-I---EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVA 158 (591)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHhccc-c---cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHH
Confidence 345566555555556555555555444431110 0 1234445555556666665443 3344445567744 333
Q ss_pred HHHhhhhhhhHHHHHHHHHHHhhccCCccccchhhhHHhHHHHHHHHHHHHHHHHHcCCCh
Q 036062 101 SFFAGLAASGALTSGLRLLTKAAFEKSHDGLRKGVMLFLAICTSFEFVCILLYAFFFPKLP 161 (333)
Q Consensus 101 a~~~Gqg~aGi~~s~~~ii~~~~~~~~~~~~~~s~~iyF~~a~~~~~~~~~~~~~~l~k~~ 161 (333)
....+.++++.+.+. +..+...+ + .+. .++.++.+..++++++.. .+ |.|
T Consensus 159 i~~~~~gLGsaI~~~---l~~~l~~~---~--~~~-~fl~l~vl~~vv~ll~~~-~v-r~p 208 (591)
T PTZ00207 159 IMKTFTGLGSAILGS---IQLAFFSD---N--TSA-YFFFLMSFALVVGILAIV-FM-RLP 208 (591)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHH---h--HHH-HHHHHHHHHHHHHHHHHh-he-eCC
Confidence 444555555543222 22222221 1 222 334456666666666665 44 443
No 130
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=58.06 E-value=1.6e+02 Score=30.01 Aligned_cols=80 Identities=14% Similarity=0.062 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhh
Q 036062 11 VYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGD 90 (333)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gl 90 (333)
++-+..++..++..++.++.+.+.-+..+.++..+.++.+...+ ..+..++..++.|++.....++....
T Consensus 262 ~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~----------~~~~~~~~l~l~G~~~~~~~~~~~t~ 331 (524)
T PF05977_consen 262 AFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSP----------SFWLALIALFLAGAAWIIANSSLNTL 331 (524)
T ss_pred HHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcch----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566667777777776654434445444433333322221 23445555666676665554444333
Q ss_pred cc-cCChHHHH
Q 036062 91 LS-FMYPEFMQ 100 (333)
Q Consensus 91 a~-~~p~~~~~ 100 (333)
.- ..|+++.+
T Consensus 332 ~Q~~~P~~~~G 342 (524)
T PF05977_consen 332 VQLSVPDWVRG 342 (524)
T ss_pred HHHhCCHHHHh
Confidence 32 34555443
No 131
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=57.30 E-value=1.5e+02 Score=28.37 Aligned_cols=23 Identities=9% Similarity=-0.116 Sum_probs=12.8
Q ss_pred HHhhhhHhhccchhhhcccC-ChH
Q 036062 75 LFGVADAHVRGGIVGDLSFM-YPE 97 (333)
Q Consensus 75 ~~g~~~~~~q~s~~gla~~~-p~~ 97 (333)
..|+..+........+.... |.+
T Consensus 316 ~~g~~~~~~~~~~~~~~~~~~~~~ 339 (402)
T PRK11902 316 CGGMGTAAFVALLMALCNRSFSAT 339 (402)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcHH
Confidence 44555555566666666654 433
No 132
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=56.43 E-value=1.4e+02 Score=30.05 Aligned_cols=92 Identities=12% Similarity=-0.111 Sum_probs=59.2
Q ss_pred CceehhhhhHHHHHHHHHHHhhhccCCCccch-HHHHHHHHHHHHHHHHHhhhccCC----------CCcch-HHHHHHH
Q 036062 5 TRALTLVYQPFALGTMAILAYNESKIDTRKRN-ITGYIIFFASTLALLLLDLATSGE----------GGLGP-FLGVCVF 72 (333)
Q Consensus 5 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri-~~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~-f~~~l~~ 72 (333)
.++-.+.+.+.+.+..++..++.+++..+.|. ..++++..+++....++....+.. +.... =+..++.
T Consensus 307 G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 386 (477)
T TIGR01301 307 GAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIV 386 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHH
Confidence 34445566666777777778888887766666 456666666666655554311000 01111 2456778
Q ss_pred HHHHhhhhHhhccchhhhcccCCh
Q 036062 73 VALFGVADAHVRGGIVGDLSFMYP 96 (333)
Q Consensus 73 v~~~g~~~~~~q~s~~gla~~~p~ 96 (333)
..+.|++-+...+-=|++.+..-+
T Consensus 387 ~~~~Gi~~A~~~siPfal~s~~~~ 410 (477)
T TIGR01301 387 FAILGIPLAITYSIPFALASIRSS 410 (477)
T ss_pred HHHhhHHHHHHHHHhHHHHHHHcc
Confidence 888999999999999999888655
No 133
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=56.19 E-value=86 Score=23.71 Aligned_cols=17 Identities=6% Similarity=0.174 Sum_probs=11.2
Q ss_pred HhHHHHHHHHHHHHHHH
Q 036062 138 FLAICTSFEFVCILLYA 154 (333)
Q Consensus 138 yF~~a~~~~~~~~~~~~ 154 (333)
.|.++.+.+++..+.+.
T Consensus 5 ~Fl~~l~lliig~~~~v 21 (92)
T PF13038_consen 5 LFLVGLILLIIGGFLFV 21 (92)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56777777766666654
No 134
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=52.91 E-value=0.05 Score=53.34 Aligned_cols=142 Identities=14% Similarity=0.063 Sum_probs=70.0
Q ss_pred hhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchh
Q 036062 9 TLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIV 88 (333)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~ 88 (333)
..+..+...+..++.-.+.+|...|.=++.+..+..+..++....+.. ..++..++.-++.|++.|..+....
T Consensus 52 ~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~-------~~~~~~~~~R~~~G~~~g~~~~~~~ 124 (451)
T PF00083_consen 52 TSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSY-------NNFWMLLIGRFLIGFGIGGAYVVSP 124 (451)
T ss_pred HHHHHhhhcccccccccccccccccccccccccccccccccccccccc-------ccccccccccccccccccccccccc
Confidence 334445555555666666677766654444555544444332222210 1234455666778888888887777
Q ss_pred hhcccCC-hHHHH----HHHhhhhhhhHHHHHHHHHHHhhccCCccccchhhhHHhHHHHHHHHHHHHHHHHHcCCChHH
Q 036062 89 GDLSFMY-PEFMQ----SFFAGLAASGALTSGLRLLTKAAFEKSHDGLRKGVMLFLAICTSFEFVCILLYAFFFPKLPIV 163 (333)
Q Consensus 89 gla~~~p-~~~~~----a~~~Gqg~aGi~~s~~~ii~~~~~~~~~~~~~~s~~iyF~~a~~~~~~~~~~~~~~l~k~~~~ 163 (333)
.+..... +++-+ ....+..++.++.++........ . + +..-..++..+.+..++.++... .++-+|..
T Consensus 125 ~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~----~-~-~~~Wr~~~~~~~~~~l~~~~~~~-~~pESP~w 197 (451)
T PF00083_consen 125 IYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY----S-D-NWGWRILLIFGAIPSLLVLLLRF-FLPESPRW 197 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccc----c-c-ccccccccccccccccccccccc-ccccccce
Confidence 7777764 33332 22233333333333332222111 0 1 12233444555554444444444 67777764
Q ss_pred H
Q 036062 164 K 164 (333)
Q Consensus 164 ~ 164 (333)
-
T Consensus 198 L 198 (451)
T PF00083_consen 198 L 198 (451)
T ss_pred e
Confidence 3
No 135
>PRK03699 putative transporter; Provisional
Probab=52.59 E-value=90 Score=29.81 Aligned_cols=23 Identities=13% Similarity=0.106 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHhhhccCCCcc
Q 036062 12 YQPFALGTMAILAYNESKIDTRK 34 (333)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~~~~~ 34 (333)
+.+...+..++.-.+.+|++.+.
T Consensus 250 ~~~~~~ig~~~~g~l~dr~~~~~ 272 (394)
T PRK03699 250 FWMAYMVGMWIFSFIVRFFDLQR 272 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhchhh
Confidence 34455566666667777776653
No 136
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=49.91 E-value=2.5e+02 Score=27.23 Aligned_cols=73 Identities=7% Similarity=0.080 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhhhhhcccccccccCcchHHH-HHHHHHHHHHHHHhhhhcCch---hHHHHHHHHHhhhcchhhhhhh
Q 036062 250 LVLIASYNVWDLIARYIPLVKCVKLESRKGLMI-TILCRFLLVPAFYFTAKYGDQ---GWMIFLTSFLGLTNGYLTVCVM 325 (333)
Q Consensus 250 ~~~~~~fNlgD~iGR~l~~~~~~~~~~~~~l~~-~~~~R~ifiplf~lc~~~~~d---~~~~i~~~lfgltNGy~~t~~m 325 (333)
-....+..+++.+|+....+..-+. ++|++.. ..++-.+...++.. ...+. +..++..++.|+..|.+....+
T Consensus 254 g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~~~~~v~~~l~~~--~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~ 330 (418)
T TIGR00889 254 SIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSLVAWALRFGFFAY--GDPEYFGYALLFLSMIVYGCAFDFFNISGS 330 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHH--cCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888887666532222 3444333 33222222111111 11111 2234457778877766544443
No 137
>PRK09528 lacY galactoside permease; Reviewed
Probab=49.08 E-value=1.9e+02 Score=27.77 Aligned_cols=29 Identities=10% Similarity=0.102 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhhhccCCCccchHHHHHHH
Q 036062 15 FALGTMAILAYNESKIDTRKRNITGYIIF 43 (333)
Q Consensus 15 ~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~ 43 (333)
...+.....-++.+|.+.+.-+..+.++.
T Consensus 274 ~~~~~~~~~g~l~dr~g~~~~~~~~~~l~ 302 (420)
T PRK09528 274 LEALIMFFAPFIINRIGAKNALLLAGTIM 302 (420)
T ss_pred HHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 33344455556667776655444444443
No 138
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=48.34 E-value=2.5e+02 Score=26.79 Aligned_cols=44 Identities=18% Similarity=0.167 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhhhhcccccccccCcchHHHHHHHHHHHHHHHHhhhh
Q 036062 252 LIASYNVWDLIARYIPLVKCVKLESRKGLMITILCRFLLVPAFYFTAK 299 (333)
Q Consensus 252 ~~~~fNlgD~iGR~l~~~~~~~~~~~~~l~~~~~~R~ifiplf~lc~~ 299 (333)
-..++.+|-.+.|.-... ..+.+.....++.|.+..|++.+...
T Consensus 284 pl~l~~lG~~l~~~~~~~----~~~~~~~~~~~~~rlii~P~i~~~~~ 327 (385)
T PF03547_consen 284 PLALFVLGASLARGPRKS----ALGWKPSIIAVLVRLIILPLIGIGIV 327 (385)
T ss_pred HHHHHHHHHHHhcCCccc----chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666532111 11233344468889999999877653
No 139
>PRK12307 putative sialic acid transporter; Provisional
Probab=47.69 E-value=2.3e+02 Score=27.08 Aligned_cols=31 Identities=10% Similarity=0.014 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHhhhccCCCccchHHHHHHH
Q 036062 13 QPFALGTMAILAYNESKIDTRKRNITGYIIF 43 (333)
Q Consensus 13 ~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~ 43 (333)
.+..++...+..++.+|++.+..+..+.++.
T Consensus 276 ~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~ 306 (426)
T PRK12307 276 AFGTVLGNIVWGLCADRIGLKKTFSIGLLMS 306 (426)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3344444555556667766554444444443
No 140
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=47.66 E-value=2.1e+02 Score=28.73 Aligned_cols=92 Identities=12% Similarity=0.014 Sum_probs=52.9
Q ss_pred ehhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccC----CCCcchHHHHHHHHHHHhhhhHhh
Q 036062 8 LTLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSG----EGGLGPFLGVCVFVALFGVADAHV 83 (333)
Q Consensus 8 ~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~f~~~l~~v~~~g~~~~~~ 83 (333)
.++.....+.+..++..++.+|...|..++.|.+.+.+.++++......... ........+.++++.+..++.+..
T Consensus 334 ~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g 413 (513)
T KOG0254|consen 334 ASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWG 413 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccc
Confidence 3444555566666677788889888888888888888777776655433211 112233333333444444444444
Q ss_pred ccchhhhcccCChHHH
Q 036062 84 RGGIVGDLSFMYPEFM 99 (333)
Q Consensus 84 q~s~~gla~~~p~~~~ 99 (333)
.-.-.-.+-.+|.++-
T Consensus 414 ~v~w~~~sEifp~~~r 429 (513)
T KOG0254|consen 414 PVPWVIVSEIFPLRLR 429 (513)
T ss_pred cchhhhhhccCcHhHH
Confidence 4444445556786663
No 141
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=47.61 E-value=2.6e+02 Score=27.35 Aligned_cols=138 Identities=9% Similarity=0.022 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhhcc
Q 036062 13 QPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGDLS 92 (333)
Q Consensus 13 ~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gla~ 92 (333)
+++-+.......++.+|.+.+.=+..+.+...+=..++.... + +......+.++...+=|..=+....+..-+..
T Consensus 253 ~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~-~----~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~ 327 (400)
T PF03825_consen 253 VVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS-D----PWPFIVALQLLGQLLHGLTFGLFHAASVRYID 327 (400)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc-C----CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 344445556666666666655444444433322222222110 0 00111111111123335554555544445444
Q ss_pred -cCChHH---HHHHHh--hhhhhhHHHHHHHHHHHhhccCCccccchhhhHHhHHHHHHHHHHHHHHHHHcCC
Q 036062 93 -FMYPEF---MQSFFA--GLAASGALTSGLRLLTKAAFEKSHDGLRKGVMLFLAICTSFEFVCILLYAFFFPK 159 (333)
Q Consensus 93 -~~p~~~---~~a~~~--Gqg~aGi~~s~~~ii~~~~~~~~~~~~~~s~~iyF~~a~~~~~~~~~~~~~~l~k 159 (333)
..|++. .|++.. ..|+++.+.++ +.-+..+..+.+.......+|.+++++.++..+.+. ++-|
T Consensus 328 ~~~p~~~~at~Q~l~~~~~~Glg~~iG~~---igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~-~~fk 396 (400)
T PF03825_consen 328 RIAPPELRATAQGLYSALSFGLGGAIGSL---IGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFV-ILFK 396 (400)
T ss_pred HhCCccchHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHH-hhcc
Confidence 467665 455443 34556655543 222222211111122334567777777777777776 5545
No 142
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=45.39 E-value=64 Score=32.66 Aligned_cols=48 Identities=10% Similarity=0.067 Sum_probs=37.0
Q ss_pred HHHHHhhhhHhhccch-hhhcccCChHHHHHHHhhhhhhhHHHHHHHHHHHh
Q 036062 72 FVALFGVADAHVRGGI-VGDLSFMYPEFMQSFFAGLAASGALTSGLRLLTKA 122 (333)
Q Consensus 72 ~v~~~g~~~~~~q~s~-~gla~~~p~~~~~a~~~Gqg~aGi~~s~~~ii~~~ 122 (333)
...+.|++ ++-|+.+ ||..-.+ ++.-+.++|.+++|.++.+..+-..+
T Consensus 377 sa~i~gl~-GITEpAIPfgv~~p~--~~i~a~~iG~avgGa~~~~~gv~~~a 425 (482)
T PRK11404 377 SAIVVGAT-VATEPAIPYALAAPL--PMITANTLAGGITGVLVIAFGIKRLA 425 (482)
T ss_pred HHHHHHHH-hcCcchhHHHHcCch--HHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 33444544 7899999 8887766 78888899999999999888865443
No 143
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=45.32 E-value=2.8e+02 Score=26.45 Aligned_cols=36 Identities=8% Similarity=0.048 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHH
Q 036062 11 VYQPFALGTMAILAYNESKIDTRKRNITGYIIFFAS 46 (333)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~ 46 (333)
.+.+..++.....-+..+|.+.+..+..++.+..+.
T Consensus 248 ~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~ 283 (393)
T PRK09705 248 LMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVG 283 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 455666677777778888877665555555444333
No 144
>PRK11462 putative transporter; Provisional
Probab=40.91 E-value=3.7e+02 Score=26.55 Aligned_cols=43 Identities=16% Similarity=0.037 Sum_probs=25.5
Q ss_pred HHHhhhhHhhccchhhhcccCCh------HHHHHHHhhhhhhhHHHHHH
Q 036062 74 ALFGVADAHVRGGIVGDLSFMYP------EFMQSFFAGLAASGALTSGL 116 (333)
Q Consensus 74 ~~~g~~~~~~q~s~~gla~~~p~------~~~~a~~~Gqg~aGi~~s~~ 116 (333)
.+...+-++.+-..-++.+.+.+ +.+..-+.|..+++.+.+++
T Consensus 117 ~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~ 165 (460)
T PRK11462 117 TLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVL 165 (460)
T ss_pred HHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666677777777654 33444556666666665554
No 145
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=40.50 E-value=3.3e+02 Score=27.39 Aligned_cols=66 Identities=11% Similarity=0.106 Sum_probs=33.9
Q ss_pred hhccCCCccchHHHHHHHHHHHHH-HHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhhcc-cCCh
Q 036062 26 NESKIDTRKRNITGYIIFFASTLA-LLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGDLS-FMYP 96 (333)
Q Consensus 26 ~~~~~~~~~Ri~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gla~-~~p~ 96 (333)
+.+|+..+.-+..+++.+.+.... +..++... ...+....+....+.+++++-.+++|-+.. .||+
T Consensus 309 LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~-----~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~ 376 (462)
T PRK15034 309 ISDKFGGVRVTLINFIFMAIFSALLFLTLPGTG-----SGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQ 376 (462)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHhcccc-----ccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhh
Confidence 345665554344455544443322 22222111 123445555556666788888888887653 3553
No 146
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=38.48 E-value=3.9e+02 Score=26.15 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHhhhccCCCc
Q 036062 12 YQPFALGTMAILAYNESKIDTR 33 (333)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~~~~ 33 (333)
..+...+...+.-.+.+|+..+
T Consensus 303 ~~~~~~ig~~~~G~lsDr~g~r 324 (467)
T PRK09556 303 FEIGALVGSLLWGWLSDLANGR 324 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHCCC
Confidence 3444455555555666676544
No 147
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=37.87 E-value=3.5e+02 Score=25.48 Aligned_cols=78 Identities=13% Similarity=0.054 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhh-
Q 036062 12 YQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGD- 90 (333)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gl- 90 (333)
+.+..++...+...+.+|.+.+..+..+..+..+..+++... + + .+..++...+.|++.+.........
T Consensus 258 ~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---~-----~--~~~~~~~~~l~G~~~~~~~~~~~~~~ 327 (399)
T PRK05122 258 FGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA---P-----S--PWMALIGAALTGFGFSLVFPALGVEA 327 (399)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh---c-----c--HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 334444444555556666654433333444333333222221 1 1 1223344556666666555443332
Q ss_pred cccCChHHH
Q 036062 91 LSFMYPEFM 99 (333)
Q Consensus 91 a~~~p~~~~ 99 (333)
....|++..
T Consensus 328 ~~~~~~~~~ 336 (399)
T PRK05122 328 VKRVPPQNR 336 (399)
T ss_pred HHhCCHHHH
Confidence 235665543
No 148
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=36.96 E-value=63 Score=29.81 Aligned_cols=47 Identities=15% Similarity=0.078 Sum_probs=27.1
Q ss_pred hhhhhhhHHHHHHHHHHHhh------ccCCccccchhhhHHhHHHHHHHHHHH
Q 036062 104 AGLAASGALTSGLRLLTKAA------FEKSHDGLRKGVMLFLAICTSFEFVCI 150 (333)
Q Consensus 104 ~Gqg~aGi~~s~~~ii~~~~------~~~~~~~~~~s~~iyF~~a~~~~~~~~ 150 (333)
+|-|++=.+=+..++++-++ ++.+.+.+....+-|.+++.+++-..+
T Consensus 79 iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~ 131 (254)
T PF07857_consen 79 IGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGII 131 (254)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHh
Confidence 45555555555555555544 233455667777888877766544433
No 149
>PRK11010 ampG muropeptide transporter; Validated
Probab=36.22 E-value=4.5e+02 Score=26.19 Aligned_cols=38 Identities=11% Similarity=-0.050 Sum_probs=16.4
Q ss_pred hhhhHhhccchhhhccc-CChHHHHHHHhhhhhhhHHHH
Q 036062 77 GVADAHVRGGIVGDLSF-MYPEFMQSFFAGLAASGALTS 114 (333)
Q Consensus 77 g~~~~~~q~s~~gla~~-~p~~~~~a~~~Gqg~aGi~~s 114 (333)
|++.+........+... ++.+......+..++++++.+
T Consensus 331 g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~ 369 (491)
T PRK11010 331 GMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVG 369 (491)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 33343333333333333 444444444444555555443
No 150
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=36.14 E-value=4.1e+02 Score=26.60 Aligned_cols=31 Identities=10% Similarity=0.336 Sum_probs=21.4
Q ss_pred chhHHHHHHHHHhhhcchhhhh----hhcccCCCC
Q 036062 302 DQGWMIFLTSFLGLTNGYLTVC----VMTVAPKGY 332 (333)
Q Consensus 302 ~d~~~~i~~~lfgltNGy~~t~----~m~~~P~~~ 332 (333)
+.+|.+...++.|+..|.++.. .+-.+|++.
T Consensus 378 s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~ 412 (489)
T PRK10207 378 SPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL 412 (489)
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH
Confidence 4566777788899988888766 344556543
No 151
>TIGR00895 2A0115 benzoate transport.
Probab=35.16 E-value=1.2e+02 Score=28.13 Aligned_cols=73 Identities=15% Similarity=0.070 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhhhhhcccccccccCcchHHH-HHHHHHHHHHHHHhhhhcCchhHHHHHHHHHhhhcchhhhhhhc
Q 036062 250 LVLIASYNVWDLIARYIPLVKCVKLESRKGLMI-TILCRFLLVPAFYFTAKYGDQGWMIFLTSFLGLTNGYLTVCVMT 326 (333)
Q Consensus 250 ~~~~~~fNlgD~iGR~l~~~~~~~~~~~~~l~~-~~~~R~ifiplf~lc~~~~~d~~~~i~~~lfgltNGy~~t~~m~ 326 (333)
-.....+.++..+|..+.++..-+. ++|..+. ..+.-.+. .+++...++-+..++..++.|+..|........
T Consensus 55 ~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 128 (398)
T TIGR00895 55 GFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLFSVF---TLLCALATNVTQLLILRFLAGLGLGGLMPNLNA 128 (398)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHHHHH---HHHHHHccchHHHHHHHHHHhcccccchhhHHH
Confidence 3456677788888877766532222 3343332 22222221 122222234444566678888888765544443
No 152
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=35.02 E-value=1.6e+02 Score=27.73 Aligned_cols=110 Identities=11% Similarity=0.075 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhhhhceeccceeeeccccccCC-chHHHHHHHHHHHHHHhhhhhcccccccccCcchHHHHHHHHH
Q 036062 210 FIQNFDYALDLFLIYVLTLSIFPGFLYENTGQHRLG-EWYSLVLIASYNVWDLIARYIPLVKCVKLESRKGLMITILCRF 288 (333)
Q Consensus 210 ~~~i~~~~~~i~l~f~vTl~vFPgi~~~~~~~~~~~-~w~~~~~~~~fNlgD~iGR~l~~~~~~~~~~~~~l~~~~~~R~ 288 (333)
++..|.-.+...+.+.......|.+..+..-+.... +...-....++.+++.++....++..-+. ++|..+... -+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~--~~ 92 (408)
T PRK09874 16 LTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRS--AL 92 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHH--HH
Confidence 344444444444444444445555532211010100 11123556777788887776655432222 334333222 22
Q ss_pred HHHHHHHhhhhcCchhHHHHHHHHHhhhcchhhh
Q 036062 289 LLVPAFYFTAKYGDQGWMIFLTSFLGLTNGYLTV 322 (333)
Q Consensus 289 ifiplf~lc~~~~~d~~~~i~~~lfgltNGy~~t 322 (333)
+.....+++...++-++.++..++.|+..|+...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 126 (408)
T PRK09874 93 GMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPN 126 (408)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHh
Confidence 2222222222224444556667788887776543
No 153
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=34.80 E-value=4.4e+02 Score=25.64 Aligned_cols=40 Identities=13% Similarity=0.109 Sum_probs=19.4
Q ss_pred HHHhhhhHhhccchhhhcccCChHHHHHHHhhhhhhhHHH
Q 036062 74 ALFGVADAHVRGGIVGDLSFMYPEFMQSFFAGLAASGALT 113 (333)
Q Consensus 74 ~~~g~~~~~~q~s~~gla~~~p~~~~~a~~~Gqg~aGi~~ 113 (333)
.+.+.+.+.........+....|++....+.=.+.+|.+.
T Consensus 369 ~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l~ 408 (465)
T TIGR00894 369 TLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIG 408 (465)
T ss_pred HHHHHHhhhhhhhhhhchhhcChhHHHHHHHHHHHHHHHH
Confidence 3334444444444444555555666665554444444433
No 154
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=33.66 E-value=1.8e+02 Score=27.08 Aligned_cols=75 Identities=12% Similarity=-0.077 Sum_probs=42.4
Q ss_pred hhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhh
Q 036062 11 VYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGD 90 (333)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gl 90 (333)
.+.....+..++..+..+|++.+.-+..+.++..+..+++... + .. .....+.+.|++.+..-...+++
T Consensus 186 ~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~---~----~~----~~~~~~~l~g~~~s~i~P~~~s~ 254 (310)
T TIGR01272 186 YTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT---H----GY----VAMWFVLALGLFNSIMFPTIFSL 254 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc---C----CH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566777888888875544433443333332221111 1 11 12334557888889999998888
Q ss_pred ccc-CCh
Q 036062 91 LSF-MYP 96 (333)
Q Consensus 91 a~~-~p~ 96 (333)
+.. +|+
T Consensus 255 a~~~~~~ 261 (310)
T TIGR01272 255 ALNALGR 261 (310)
T ss_pred HHhhhhh
Confidence 866 554
No 155
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=33.38 E-value=1.3e+02 Score=27.51 Aligned_cols=70 Identities=16% Similarity=0.221 Sum_probs=36.0
Q ss_pred HHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhhcccCCh
Q 036062 20 MAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGDLSFMYP 96 (333)
Q Consensus 20 ~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gla~~~p~ 96 (333)
..+.-++.+|.+.+.+.........+....+....... .....++...+.|++.+........+....-|
T Consensus 260 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 329 (352)
T PF07690_consen 260 SLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSS-------SPVWLIIALFLIGFGFGIVFPILFSLIQELVP 329 (352)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHC-------HHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44555566666665555555544443333333222211 12233335555677777777777777666443
No 156
>PRK12382 putative transporter; Provisional
Probab=32.79 E-value=4.2e+02 Score=24.89 Aligned_cols=77 Identities=10% Similarity=-0.006 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhh-c
Q 036062 13 QPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGD-L 91 (333)
Q Consensus 13 ~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gl-a 91 (333)
.+..++.....-++.+|.+.+..+..+..+..+....+... + . ++..++...+.|++.+......... +
T Consensus 259 ~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~---~-----~--~~~~~~~~~l~g~~~~~~~~~~~~~~~ 328 (392)
T PRK12382 259 GGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA---P-----T--AWVALAGAALTGAGCSLIFPALGVEVV 328 (392)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc---c-----c--HHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33344444555566777766655555555544433332221 1 1 1233444555666666555544433 3
Q ss_pred ccCChHHH
Q 036062 92 SFMYPEFM 99 (333)
Q Consensus 92 ~~~p~~~~ 99 (333)
...|+++.
T Consensus 329 ~~~~~~~~ 336 (392)
T PRK12382 329 KRVPSQVR 336 (392)
T ss_pred HhcCHHHH
Confidence 45676654
No 157
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=32.34 E-value=5.1e+02 Score=25.68 Aligned_cols=82 Identities=13% Similarity=0.045 Sum_probs=46.2
Q ss_pred CCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhhcccC-ChH----HHHHHHhh
Q 036062 31 DTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGDLSFM-YPE----FMQSFFAG 105 (333)
Q Consensus 31 ~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gla~~~-p~~----~~~a~~~G 105 (333)
+...|+..|+++..+....+.+..... +.+....++...+..++.+++..+......++.+.. |++ |+..+..+
T Consensus 347 ~~~~k~~~G~~l~~~~~~~~~~~~~~~-~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~ 425 (475)
T TIGR00924 347 TTPLKFTLGMLFCGASFLTFAASIWFA-DAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLA 425 (475)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344467778777655554443321111 111123455566677788888888888889888877 443 33333344
Q ss_pred hhhhhHHH
Q 036062 106 LAASGALT 113 (333)
Q Consensus 106 qg~aGi~~ 113 (333)
++++..+.
T Consensus 426 ~~~g~~l~ 433 (475)
T TIGR00924 426 QAMGSLLG 433 (475)
T ss_pred HHHHHHHH
Confidence 44444443
No 158
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=31.72 E-value=3.5e+02 Score=23.55 Aligned_cols=111 Identities=17% Similarity=0.014 Sum_probs=54.6
Q ss_pred ccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhhcccCChHHHHHHHhhhh
Q 036062 28 SKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGDLSFMYPEFMQSFFAGLA 107 (333)
Q Consensus 28 ~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gla~~~p~~~~~a~~~Gqg 107 (333)
++.+.+.|....+.+..+.+++...++..... + . ...+...+.+++.+++.+..-.+.+. ++...+++|+
T Consensus 74 ~~~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~-~-~----~~~~~~~~lafamg~Qn~~~~~~~g~---~~~Tt~~TG~- 143 (209)
T PF06912_consen 74 RRRRRRRWYRILLLLEAILLLIAALLPPAFPP-H-G----HRILAIFLLAFAMGMQNAAFRRLGGV---SIRTTFMTGN- 143 (209)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhccc-c-h----HHHHHHHHHHHHHHHHHHHHHHcCCC---cccchhhHhh-
Confidence 33444555555666655555555555543211 1 1 23444444555555544444433332 4455555554
Q ss_pred hhhHHHHHHHHHHHhhccCCccccchhhhHHhHHHHHHHHHHHHHHH
Q 036062 108 ASGALTSGLRLLTKAAFEKSHDGLRKGVMLFLAICTSFEFVCILLYA 154 (333)
Q Consensus 108 ~aGi~~s~~~ii~~~~~~~~~~~~~~s~~iyF~~a~~~~~~~~~~~~ 154 (333)
+..+.+-+.....++++ .+.....|+.+-..+.+.+++...
T Consensus 144 ----l~~~~~~l~~~~~~~~~--~~~~~~~~~~~i~~f~~Ga~~ga~ 184 (209)
T PF06912_consen 144 ----LTDLGIDLARYLRGKDR--ALRRALRYLLIILSFFIGAILGAL 184 (209)
T ss_pred ----HHHHHHHHHHHHhCCch--hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444333322 345566677766666666666654
No 159
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=31.30 E-value=3.7e+02 Score=29.86 Aligned_cols=34 Identities=9% Similarity=0.040 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhhhHhhccchhhhcc-cCChHHHHH
Q 036062 68 GVCVFVALFGVADAHVRGGIVGDLS-FMYPEFMQS 101 (333)
Q Consensus 68 ~~l~~v~~~g~~~~~~q~s~~gla~-~~p~~~~~a 101 (333)
..++..++.|++.+.......++.. ..|+++..-
T Consensus 336 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~ 370 (1140)
T PRK06814 336 RILIDLFGLAAAGGLYIVPLFAALQAWANPAHRAR 370 (1140)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhCCccccee
Confidence 3445555667777666655555533 356655433
No 160
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=30.91 E-value=1.6e+02 Score=29.31 Aligned_cols=24 Identities=13% Similarity=-0.200 Sum_probs=13.9
Q ss_pred hhhHHHHHHHHHHHhhhccCCCcc
Q 036062 11 VYQPFALGTMAILAYNESKIDTRK 34 (333)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~~~~~~ 34 (333)
+..+..++...+.-++.+|.+.+.
T Consensus 296 ~~~v~~i~g~~~~~~~~~~~~~r~ 319 (468)
T TIGR00788 296 VGNLGSLCGVGGYDRFLKTFPYRL 319 (468)
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHH
Confidence 344566666666666666666443
No 161
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=30.59 E-value=5.1e+02 Score=25.17 Aligned_cols=20 Identities=10% Similarity=0.154 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHhhhccCC
Q 036062 12 YQPFALGTMAILAYNESKID 31 (333)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~~ 31 (333)
+.+..+...++.-.+.+|+.
T Consensus 298 ~~~~~~~g~~~~G~l~dr~~ 317 (452)
T PRK11273 298 YEYAGIPGTLLCGWMSDKVF 317 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 33444445555555666653
No 162
>PRK10429 melibiose:sodium symporter; Provisional
Probab=30.37 E-value=5.4e+02 Score=25.32 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhhhhHhhccchhhhcccCChHHH-----HHH-HhhhhhhhHHHHHH
Q 036062 66 FLGVCVFVALFGVADAHVRGGIVGDLSFMYPEFM-----QSF-FAGLAASGALTSGL 116 (333)
Q Consensus 66 f~~~l~~v~~~g~~~~~~q~s~~gla~~~p~~~~-----~a~-~~Gqg~aGi~~s~~ 116 (333)
++..++...+.+.+-++.+-...++.+.+.+++- .++ +.+..++|++.+.+
T Consensus 106 ~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~ 162 (473)
T PRK10429 106 YVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGF 162 (473)
T ss_pred HHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445577777777777777766642221 333 56666677776543
No 163
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=30.34 E-value=4e+02 Score=24.38 Aligned_cols=87 Identities=16% Similarity=0.214 Sum_probs=50.2
Q ss_pred chHHHHHHHHHHHhhhhHhhc-cchhhhcccCChHHHHHHHhh--hhhhhHHHHHHHHHHHhhccCCccccchhhhHHhH
Q 036062 64 GPFLGVCVFVALFGVADAHVR-GGIVGDLSFMYPEFMQSFFAG--LAASGALTSGLRLLTKAAFEKSHDGLRKGVMLFLA 140 (333)
Q Consensus 64 ~~f~~~l~~v~~~g~~~~~~q-~s~~gla~~~p~~~~~a~~~G--qg~aGi~~s~~~ii~~~~~~~~~~~~~~s~~iyF~ 140 (333)
..++...+...+.|.+++..+ +++..-...||.. ++...| .|.-|+-+++..-+..+.+++| .+.+++ .
T Consensus 94 ~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~--RG~vvgilk~~~GLSaai~t~i~~~~f~~~-----~~~fll-~ 165 (250)
T PF06813_consen 94 LPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRS--RGTVVGILKGFFGLSAAIFTQIYSAFFGDD-----PSSFLL-F 165 (250)
T ss_pred cchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccc--cCceehhhhHHHHhHHHHHHHHHHHHcCCC-----hHHHHH-H
Confidence 345566666666666666554 4456666789853 333333 3556677777777888887663 234443 4
Q ss_pred HHHHHHHHHHHHHHHHcCC
Q 036062 141 ICTSFEFVCILLYAFFFPK 159 (333)
Q Consensus 141 ~a~~~~~~~~~~~~~~l~k 159 (333)
++.+..++|+++-. .++.
T Consensus 166 la~~~~~v~l~~~~-~vr~ 183 (250)
T PF06813_consen 166 LAVLPAVVCLVAMF-FVRP 183 (250)
T ss_pred HHHHHHHHHHHHhh-heec
Confidence 55555556665544 3433
No 164
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=30.11 E-value=91 Score=23.73 Aligned_cols=27 Identities=11% Similarity=0.170 Sum_probs=17.2
Q ss_pred CchhHHHHHHHHHhhhcchhhhhhhcc
Q 036062 301 GDQGWMIFLTSFLGLTNGYLTVCVMTV 327 (333)
Q Consensus 301 ~~d~~~~i~~~lfgltNGy~~t~~m~~ 327 (333)
++.+...+..++.|+..|........+
T Consensus 49 ~~~~~~~~~~~~~g~~~~~~~~~~~~~ 75 (141)
T TIGR00880 49 SNITVLIIARFLQGFGAAFALVAGAAL 75 (141)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 444555666888888888766554433
No 165
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=30.06 E-value=5.2e+02 Score=25.62 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=17.8
Q ss_pred chhHHHHHHHHHhhhcchhhhhhh
Q 036062 302 DQGWMIFLTSFLGLTNGYLTVCVM 325 (333)
Q Consensus 302 ~d~~~~i~~~lfgltNGy~~t~~m 325 (333)
+-+|.++.++++++..+......+
T Consensus 380 s~~~~i~~~~~~~~ge~~~~p~~~ 403 (475)
T TIGR00924 380 SPWFMVLIYLFQTLGELMISPLGL 403 (475)
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHH
Confidence 566777778888888877766555
No 166
>COG4769 Predicted membrane protein [Function unknown]
Probab=29.51 E-value=1.3e+02 Score=25.93 Aligned_cols=49 Identities=16% Similarity=0.155 Sum_probs=35.8
Q ss_pred HHHHHhhhhHhhccchhhhcccCChHHHHHHHhhhh-hhhHHHHHHHHHHHh
Q 036062 72 FVALFGVADAHVRGGIVGDLSFMYPEFMQSFFAGLA-ASGALTSGLRLLTKA 122 (333)
Q Consensus 72 ~v~~~g~~~~~~q~s~~gla~~~p~~~~~a~~~Gqg-~aGi~~s~~~ii~~~ 122 (333)
-+++.+++.|+..+-.+-+...|||||.. +.|.+ .+|..-++.|++..-
T Consensus 78 ~~Fl~sfaG~i~S~L~m~~l~~f~~k~~S--~lgiS~mGaF~hNl~QLivas 127 (181)
T COG4769 78 PVFLYSFAGAILSTLFMYFLYQFGPKYLS--LLGISVMGAFTHNLGQLIVAS 127 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCceEe--eeehhhHHHHHHhHHHHHHHH
Confidence 45667788888888889999999999965 34444 456666788876543
No 167
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=29.18 E-value=80 Score=30.69 Aligned_cols=47 Identities=13% Similarity=0.182 Sum_probs=36.0
Q ss_pred HHHHhhhhHhhccch-hhhcccCChHHHHHHHhhhhhhhHHHHHHHHHHHh
Q 036062 73 VALFGVADAHVRGGI-VGDLSFMYPEFMQSFFAGLAASGALTSGLRLLTKA 122 (333)
Q Consensus 73 v~~~g~~~~~~q~s~-~gla~~~p~~~~~a~~~Gqg~aGi~~s~~~ii~~~ 122 (333)
..+.|.+ ++-|+.+ ||..-.+ |-.-+.++|.+++|.++.+..+-..+
T Consensus 252 A~isgl~-GITEpAIPFgv~~p~--r~i~a~~iGsaVgGal~~~~gv~~~a 299 (359)
T PRK10478 252 ALVMGCV-GVTEGAIPFAAADPL--RVIPSIMVGSVCGAVTAALFGAQCYA 299 (359)
T ss_pred HHHHHHH-hcCccchHHHHhcch--HHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 3444444 7899999 9888766 77888999999999999888764443
No 168
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=28.81 E-value=6.2e+02 Score=25.56 Aligned_cols=45 Identities=16% Similarity=0.119 Sum_probs=27.9
Q ss_pred hhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHh
Q 036062 10 LVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLD 54 (333)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~ 54 (333)
.++..+.+++.....++.+|+..|.=...+.++..+..+++.+.+
T Consensus 279 ~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~ 323 (467)
T COG2211 279 LASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP 323 (467)
T ss_pred HHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444455567777788888766666666666666555555554
No 169
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=28.17 E-value=4.6e+02 Score=23.86 Aligned_cols=30 Identities=23% Similarity=0.150 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHhhhccCCCccchHHHHHH
Q 036062 13 QPFALGTMAILAYNESKIDTRKRNITGYII 42 (333)
Q Consensus 13 ~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~ 42 (333)
.+..++.....-++.+|.+.+.-+..+..+
T Consensus 250 ~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~ 279 (377)
T TIGR00890 250 SIFNGGGRPFLGALSDKIGRQKTMSIVFGI 279 (377)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 334444445555556665443333333333
No 170
>PRK10133 L-fucose transporter; Provisional
Probab=27.82 E-value=2e+02 Score=28.13 Aligned_cols=28 Identities=7% Similarity=-0.212 Sum_probs=21.4
Q ss_pred HHHHHHHhhhhHhhccchhhhcccCChH
Q 036062 70 CVFVALFGVADAHVRGGIVGDLSFMYPE 97 (333)
Q Consensus 70 l~~v~~~g~~~~~~q~s~~gla~~~p~~ 97 (333)
+....+.|++.+......+..+..-.++
T Consensus 351 ~~~~~l~glg~~~i~P~~~s~a~~~~~~ 378 (438)
T PRK10133 351 LIALTLCSAFMSIQYPTIFSLGIKNLGQ 378 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 4456678999999999999988884433
No 171
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=27.64 E-value=7.2e+02 Score=26.00 Aligned_cols=51 Identities=14% Similarity=0.034 Sum_probs=29.9
Q ss_pred cchH-HHHHHHHHHHHHHHHhhhhcCchhHHHHHHHHHhhhcchhhhhhhccc
Q 036062 277 RKGL-MITILCRFLLVPAFYFTAKYGDQGWMIFLTSFLGLTNGYLTVCVMTVA 328 (333)
Q Consensus 277 ~~~l-~~~~~~R~ifiplf~lc~~~~~d~~~~i~~~lfgltNGy~~t~~m~~~ 328 (333)
-|+. +..++...+|+-+....+..+...+ +.+.++-|+--|+....++..+
T Consensus 379 ~Kw~li~~~~~~ta~~Gama~~~~~n~~~~-i~~~~l~g~giG~~~~~~~~~~ 430 (599)
T PF06609_consen 379 IKWQLIFGSVLMTAFCGAMAAVRPDNKNAA-IAFLVLAGFGIGGILVPAIVIA 430 (599)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccCCCcchH-HHHHHHHHHhHHHHHHHHHHee
Confidence 3444 3455556666665554443333333 4557788888888887776654
No 172
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=26.94 E-value=7e+02 Score=25.54 Aligned_cols=147 Identities=19% Similarity=0.174 Sum_probs=72.2
Q ss_pred hhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhh
Q 036062 10 LVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVG 89 (333)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~g 89 (333)
.+..+.++..+++-=.++.++..|.-.-..++++++++++ .-.+..+ .+....++.....=+++| +--|+=|.
T Consensus 91 ~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~-~~~s~~~--~~~~~~m~~L~~~R~~LG----iGIGGDYP 163 (538)
T KOG0252|consen 91 AAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSAL-SGLSVGT--TSPLGVMMTLCFFRFLLG----IGIGGDYP 163 (538)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHH-hccCCCC--CCCcchhhHHHHHHHHhh----ccccCCCc
Confidence 4455666677777777788876655444466677776662 2222222 112232222222223333 33334444
Q ss_pred hcccCChHHH---------HHHHhhhhhhhHHHHHHHHHHHhhccCCc------cccchhhhHHhHHHHHHHHHHHHHHH
Q 036062 90 DLSFMYPEFM---------QSFFAGLAASGALTSGLRLLTKAAFEKSH------DGLRKGVMLFLAICTSFEFVCILLYA 154 (333)
Q Consensus 90 la~~~p~~~~---------~a~~~Gqg~aGi~~s~~~ii~~~~~~~~~------~~~~~s~~iyF~~a~~~~~~~~~~~~ 154 (333)
+++..-+|+. .++.+=||++=+...++.++..++++..- ...+.--.+=|.++++.-++ +.|
T Consensus 164 lSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~--~ly- 240 (538)
T KOG0252|consen 164 LSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALL--VLY- 240 (538)
T ss_pred chHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHH--HHH-
Confidence 4444334433 34444456555555556666655554321 12233344556666554433 334
Q ss_pred HHcCCChHHHHHH
Q 036062 155 FFFPKLPIVKYFR 167 (333)
Q Consensus 155 ~~l~k~~~~~~~~ 167 (333)
+-.|+|-.+.|.
T Consensus 241 -~Rl~M~Et~~Y~ 252 (538)
T KOG0252|consen 241 -FRLKMPETARYT 252 (538)
T ss_pred -hhhcCCcchhHH
Confidence 344666666665
No 173
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=26.44 E-value=6.9e+02 Score=25.33 Aligned_cols=26 Identities=12% Similarity=0.229 Sum_probs=18.9
Q ss_pred ceehhhhhHHHHHHHHHHHhhhccCC
Q 036062 6 RALTLVYQPFALGTMAILAYNESKID 31 (333)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~~~~~~~~~ 31 (333)
+.+++.+-+..++..++...+..|+.
T Consensus 312 ~~ls~~~~~~g~v~~i~ag~lsdr~~ 337 (495)
T KOG2533|consen 312 NLLSTPYDVGGIVGLILAGYLSDRLK 337 (495)
T ss_pred ccccchHHhhhHHHHHHHHHHHHHHh
Confidence 45666777777777777777778765
No 174
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=26.09 E-value=2.7e+02 Score=28.36 Aligned_cols=66 Identities=23% Similarity=0.269 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhc
Q 036062 11 VYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVR 84 (333)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q 84 (333)
+..+.+....++.-....+...+.+....+.+....+.. ..++... -|+..+....+.|.+.+...
T Consensus 341 iigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~-~~~p~~~-------~~~~l~~~~~~fG~~~g~~~ 406 (509)
T KOG2504|consen 341 IIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLAR-LFLPFAT-------TYVGLIVFSILFGFCVGSFS 406 (509)
T ss_pred HHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHH-HHHHHhc-------cHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666655555544444333222222 3333321 23445555555565554443
No 175
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=25.92 E-value=5e+02 Score=23.47 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=12.2
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHH
Q 036062 98 FMQSFFAGLAASGALTSGLRLLT 120 (333)
Q Consensus 98 ~~~a~~~Gqg~aGi~~s~~~ii~ 120 (333)
+.--+..|.-++|++..+...+-
T Consensus 11 ~~~~illg~~iGg~~G~~~~~~~ 33 (248)
T PF11368_consen 11 FLLLILLGGLIGGFIGFFIGRIG 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556566666665544443
No 176
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=25.85 E-value=1.7e+02 Score=28.00 Aligned_cols=73 Identities=10% Similarity=0.052 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhhhhcccccccccCcchHH-HHHHHHHHHHHHHHhhhhcCchhHHHHHHHHHhhhcchhhhhhhcc
Q 036062 251 VLIASYNVWDLIARYIPLVKCVKLESRKGLM-ITILCRFLLVPAFYFTAKYGDQGWMIFLTSFLGLTNGYLTVCVMTV 327 (333)
Q Consensus 251 ~~~~~fNlgD~iGR~l~~~~~~~~~~~~~l~-~~~~~R~ifiplf~lc~~~~~d~~~~i~~~lfgltNGy~~t~~m~~ 327 (333)
.....+.++-.+|+.+......+. ++|.+. ...++..+ ..+++...++-++.++.-++.|+.+|-.......+
T Consensus 59 ~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 132 (394)
T PRK10213 59 QSVTVTAFVAMFASLFITQTIQAT-DRRYVVILFAVLLTL---SCLLVSFANSFSLLLIGRACLGLALGGFWAMSASL 132 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHHHHHHHH---HHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344566777777776666532222 344433 33333333 33333333555666777888999888665544433
No 177
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=25.05 E-value=7e+02 Score=24.91 Aligned_cols=31 Identities=13% Similarity=0.282 Sum_probs=21.5
Q ss_pred chhHHHHHHHHHhhhcchhhh----hhhcccCCCC
Q 036062 302 DQGWMIFLTSFLGLTNGYLTV----CVMTVAPKGY 332 (333)
Q Consensus 302 ~d~~~~i~~~lfgltNGy~~t----~~m~~~P~~~ 332 (333)
|.+|.+...++.|+..+.++- ..+..+|+..
T Consensus 381 s~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~ 415 (500)
T PRK09584 381 SVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL 415 (500)
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH
Confidence 356777778889998888654 4445667654
No 178
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=24.01 E-value=6.4e+02 Score=24.08 Aligned_cols=68 Identities=9% Similarity=0.026 Sum_probs=33.7
Q ss_pred HHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhhcc-cCChH
Q 036062 20 MAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGDLS-FMYPE 97 (333)
Q Consensus 20 ~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gla~-~~p~~ 97 (333)
..+.-.+.+|.+.|.=+..+..+..+.++..... + .++...+...+.|++.+..+....++.. ..|++
T Consensus 63 ~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~---~-------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 131 (400)
T PRK11646 63 GIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA---H-------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPH 131 (400)
T ss_pred HhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh---c-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 3444455667665444444555544444333221 1 1233444555667777776666555544 35653
No 179
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=23.96 E-value=7.8e+02 Score=25.04 Aligned_cols=78 Identities=13% Similarity=0.147 Sum_probs=52.9
Q ss_pred eehhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccc
Q 036062 7 ALTLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGG 86 (333)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s 86 (333)
.++.++++...++.=+.-+++.|.+.+.-+..|..+..+.++.-.++ ..|+..+++-.+.|++-|...+.
T Consensus 72 ll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs----------~~Fwq~~l~R~~vGiGeAs~~~i 141 (493)
T KOG1330|consen 72 LLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS----------NHFWQVLLCRGFVGIGEASYSPI 141 (493)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhccchhhhccc
Confidence 34555566666666666677888877777777888776666553333 24777888888888888777766
Q ss_pred hhhhcccC
Q 036062 87 IVGDLSFM 94 (333)
Q Consensus 87 ~~gla~~~ 94 (333)
.=++-+-.
T Consensus 142 a~s~IaD~ 149 (493)
T KOG1330|consen 142 APSLIADS 149 (493)
T ss_pred chhHhhhc
Confidence 66665553
No 180
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=23.42 E-value=7.6e+02 Score=24.76 Aligned_cols=104 Identities=16% Similarity=0.190 Sum_probs=50.6
Q ss_pred hhhhhHHHHHHHHHHHhhhccCCCcc-chH-HHHHHHHHHHHHHHHH---hhhccCCCCcchHHHHHHHHHHHhhhhHhh
Q 036062 9 TLVYQPFALGTMAILAYNESKIDTRK-RNI-TGYIIFFASTLALLLL---DLATSGEGGLGPFLGVCVFVALFGVADAHV 83 (333)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~~~~~~-Ri~-~~l~~~~~~~~~~~~~---~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~ 83 (333)
.++.|+....+.++--++++|+..|. |++ .++++..+ ..+..++ +......++..+|. ..++.|.+.+-.
T Consensus 323 ~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~-i~~~g~~G~~~~~~g~~~~~~f~~----~a~~~G~~~G~~ 397 (477)
T PF11700_consen 323 GLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWII-IPLYGLFGFWPSFFGLKSPWEFWV----LAVLIGLFMGGI 397 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH-HHHHHHHHhhhcccCcccHHHHHH----HHHHHHHHhhhH
Confidence 45566777777777778999998883 333 33333322 2222222 11100111223333 233444444444
Q ss_pred ccchhhhcc-cCChHHHHHHHhhhhhhhHHHHHHH
Q 036062 84 RGGIVGDLS-FMYPEFMQSFFAGLAASGALTSGLR 117 (333)
Q Consensus 84 q~s~~gla~-~~p~~~~~a~~~Gqg~aGi~~s~~~ 117 (333)
|+..=.+.+ +.|++..+-++.=-++.|=.++.+-
T Consensus 398 qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lG 432 (477)
T PF11700_consen 398 QSASRSLFSRLIPPGREAEFFGLYAITGKASSWLG 432 (477)
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHH
Confidence 444444444 4576666666555555555554443
No 181
>PF04145 Ctr: Ctr copper transporter family; InterPro: IPR007274 The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation. A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionines probably coordinate copper during the process of metal transport.; GO: 0005375 copper ion transmembrane transporter activity, 0035434 copper ion transmembrane transport, 0016021 integral to membrane; PDB: 2LS4_A 2LS2_A 2LS3_A.
Probab=22.78 E-value=1.4e+02 Score=24.23 Aligned_cols=18 Identities=11% Similarity=0.377 Sum_probs=8.9
Q ss_pred hhhHHhHHHHHHHHHHHH
Q 036062 134 GVMLFLAICTSFEFVCIL 151 (333)
Q Consensus 134 s~~iyF~~a~~~~~~~~~ 151 (333)
+..-|.+.+.++.+++++
T Consensus 23 s~~~~~~sci~~f~lav~ 40 (144)
T PF04145_consen 23 SAGAYVGSCIGVFLLAVL 40 (144)
T ss_dssp --HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 444466665555555553
No 182
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=22.75 E-value=4.3e+02 Score=26.89 Aligned_cols=107 Identities=13% Similarity=0.028 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhhhhceeccceeeeccccccC-CchHHHHHHHHHHHHHHhhhhhcccccccccCcchHHHHHHHHHH
Q 036062 211 IQNFDYALDLFLIYVLTLSIFPGFLYENTGQHRL-GEWYSLVLIASYNVWDLIARYIPLVKCVKLESRKGLMITILCRFL 289 (333)
Q Consensus 211 ~~i~~~~~~i~l~f~vTl~vFPgi~~~~~~~~~~-~~w~~~~~~~~fNlgD~iGR~l~~~~~~~~~~~~~l~~~~~~R~i 289 (333)
|-+|...++-|+..+..-.++|+...-.+.-|.. ++=+.=+.....++|-.++-..-+++.-+ +.+.-+-+.+.|++
T Consensus 34 rsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k--~~~~k~Pli~s~ii 111 (488)
T KOG2325|consen 34 RSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNK--TGSVKKPLIVSFLI 111 (488)
T ss_pred HhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccc--cCCcccCHHHHHHH
Confidence 5568888888888777777777654322111121 12233334555888888888766653222 22111223444665
Q ss_pred HHH--HHHhhh-hcCc--hhHHHHHHHHHhhhcch
Q 036062 290 LVP--AFYFTA-KYGD--QGWMIFLTSFLGLTNGY 319 (333)
Q Consensus 290 fip--lf~lc~-~~~~--d~~~~i~~~lfgltNGy 319 (333)
.+. +..+|. +.++ -+++.+-=++.|+.+|=
T Consensus 112 ~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n 146 (488)
T KOG2325|consen 112 AIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN 146 (488)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc
Confidence 543 222232 2334 23333335677777663
No 183
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=22.41 E-value=6.6e+02 Score=23.63 Aligned_cols=43 Identities=14% Similarity=-0.066 Sum_probs=18.7
Q ss_pred HHHHhhhhHhhccchhhhcc-cCChHH----HHHHHhhhhhhhHHHHH
Q 036062 73 VALFGVADAHVRGGIVGDLS-FMYPEF----MQSFFAGLAASGALTSG 115 (333)
Q Consensus 73 v~~~g~~~~~~q~s~~gla~-~~p~~~----~~a~~~Gqg~aGi~~s~ 115 (333)
..+.+.+.+...-..=+++. ..+++. ......|..++.++...
T Consensus 104 ~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~ 151 (390)
T TIGR02718 104 LACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGA 151 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33344445544444444432 233332 22334555555555543
No 184
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=21.64 E-value=2.1e+02 Score=26.43 Aligned_cols=20 Identities=5% Similarity=0.077 Sum_probs=8.9
Q ss_pred HhhhhHhhccchhhhcccCC
Q 036062 76 FGVADAHVRGGIVGDLSFMY 95 (333)
Q Consensus 76 ~g~~~~~~q~s~~gla~~~p 95 (333)
.++..+..++..+.+.+...
T Consensus 328 ~~~~~g~~~~~~~~~~~~~~ 347 (366)
T TIGR00886 328 LFFFSGAGNGSTFALVPHIF 347 (366)
T ss_pred HHHHhccccchhhhcchhhc
Confidence 33444444455555444433
No 185
>TIGR00901 2A0125 AmpG-related permease.
Probab=21.02 E-value=4e+02 Score=24.62 Aligned_cols=7 Identities=29% Similarity=0.320 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 036062 115 GLRLLTK 121 (333)
Q Consensus 115 ~~~ii~~ 121 (333)
...++..
T Consensus 330 ~~~~~~~ 336 (356)
T TIGR00901 330 FVAFLSK 336 (356)
T ss_pred HHHHHHH
Confidence 3333334
No 186
>PF09685 Tic20: Tic20-like protein; InterPro: IPR019109 This entry represents a group of uncharacterised conserved proteins including a chloroplast protein import component called Tic20. Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accomplished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex located at the inner membrane. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. Tic20 is a core member of the Tic complex and is deeply embedded in the inner envelope membrane. It is thought to function as a protein conducting component of the Tic complex [].
Probab=20.54 E-value=2.3e+02 Score=21.57 Aligned_cols=35 Identities=9% Similarity=0.092 Sum_probs=18.1
Q ss_pred chhhhHHhH--HHHHHHHHHHHHHHHHcCCC-hHHHHHH
Q 036062 132 RKGVMLFLA--ICTSFEFVCILLYAFFFPKL-PIVKYFR 167 (333)
Q Consensus 132 ~~s~~iyF~--~a~~~~~~~~~~~~~~l~k~-~~~~~~~ 167 (333)
..+...|++ ...+-.+..++.+. .-++. |++|+|.
T Consensus 4 ~~a~l~~ls~~~~~~~~i~pli~~~-~~k~~~~~vr~ha 41 (109)
T PF09685_consen 4 TWAALAYLSFFSPFLGFIGPLIVWI-VKKDKSPFVRFHA 41 (109)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH-HcCCCCHHHHHHH
Confidence 456666765 34444455555554 33333 5665553
No 187
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=20.38 E-value=2.6e+02 Score=25.64 Aligned_cols=74 Identities=14% Similarity=0.030 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHhhhhhcccccccccCcchH-HHHHHHHHHHHHHHHhhhhcCchhHHHHHHHHHhhhcchhhhhhhc
Q 036062 249 SLVLIASYNVWDLIARYIPLVKCVKLESRKGL-MITILCRFLLVPAFYFTAKYGDQGWMIFLTSFLGLTNGYLTVCVMT 326 (333)
Q Consensus 249 ~~~~~~~fNlgD~iGR~l~~~~~~~~~~~~~l-~~~~~~R~ifiplf~lc~~~~~d~~~~i~~~lfgltNGy~~t~~m~ 326 (333)
.-.....+.++..+|..+.++...+. ++|++ ....++-.+..-++.+ .++-+..++..++.|+..|-.......
T Consensus 32 ~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~ 106 (379)
T TIGR00881 32 LGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGF---STSLWVMAALWALNGIFQGMGWPPCGR 106 (379)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHhhccccCCchHH
Confidence 34566778888888887777643333 33433 3333333322222222 234455566677888877766555443
No 188
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=20.18 E-value=8.7e+02 Score=24.18 Aligned_cols=93 Identities=16% Similarity=0.127 Sum_probs=57.2
Q ss_pred HHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhhcccCChHHHH
Q 036062 21 AILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGDLSFMYPEFMQ 100 (333)
Q Consensus 21 ~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gla~~~p~~~~~ 100 (333)
+..-.+.+|+.-|.=...+.++..+.++.+..-+..+ .++-.+++-.++|++.+-...++--.+..||||...
T Consensus 67 l~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~-------~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG 139 (417)
T COG2223 67 LPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYP-------STWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQG 139 (417)
T ss_pred HHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCC-------chHHHHHHHHHHhcccceehcccccccccCChhhhh
Confidence 4455566666555544555566666666655554432 236678888889999999988888888888888766
Q ss_pred HHHhhhhhhhHHHHHHHHHH
Q 036062 101 SFFAGLAASGALTSGLRLLT 120 (333)
Q Consensus 101 a~~~Gqg~aGi~~s~~~ii~ 120 (333)
.-+-=.|.+=+=+++.+++.
T Consensus 140 ~AlGI~g~GN~G~av~q~~~ 159 (417)
T COG2223 140 LALGIAGAGNLGVAVAQLVA 159 (417)
T ss_pred HHHHHhccccccHHHHHHHH
Confidence 55422232223334455443
Done!