Query 036062
Match_columns 333
No_of_seqs 116 out of 702
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 15:14:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036062.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036062hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 97.9 0.00039 1.3E-08 66.0 16.6 104 7-117 66-175 (451)
2 3o7q_A L-fucose-proton symport 97.5 0.0023 7.9E-08 60.4 16.1 100 10-116 68-172 (438)
3 4gc0_A D-xylose-proton symport 96.2 0.058 2E-06 51.5 13.2 153 9-163 61-226 (491)
4 2gfp_A EMRD, multidrug resista 95.0 0.024 8.3E-07 52.2 5.5 99 8-116 40-143 (375)
5 4aps_A DI-OR tripeptide H+ sym 94.3 0.45 1.5E-05 45.3 12.7 98 8-115 59-164 (491)
6 4gc0_A D-xylose-proton symport 87.2 3.9 0.00013 38.5 10.9 42 12-53 321-362 (491)
7 4aps_A DI-OR tripeptide H+ sym 77.1 8.2 0.00028 36.3 8.8 87 11-98 327-419 (491)
8 3o7q_A L-fucose-proton symport 73.6 19 0.00066 32.9 10.2 76 11-97 303-379 (438)
9 1pw4_A Glycerol-3-phosphate tr 70.9 17 0.00059 33.3 9.2 83 10-100 295-381 (451)
10 2xut_A Proton/peptide symporte 64.3 37 0.0013 32.0 10.2 98 9-115 60-166 (524)
11 2xut_A Proton/peptide symporte 51.0 21 0.00071 33.8 5.8 48 68-115 407-459 (524)
12 2cfq_A Lactose permease; trans 42.6 24 0.00081 32.6 4.6 27 17-43 273-299 (417)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=97.89 E-value=0.00039 Score=65.96 Aligned_cols=104 Identities=11% Similarity=-0.033 Sum_probs=61.3
Q ss_pred eehhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhh-hccCCCCcchHHHHHHHHHHHhhhhHhhcc
Q 036062 7 ALTLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDL-ATSGEGGLGPFLGVCVFVALFGVADAHVRG 85 (333)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~ 85 (333)
++..++.++..+...+.-.+.+|...|.=+..+.++..+..++....+. .+ .++..++.-++.|++.+....
T Consensus 66 ~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~l~G~~~~~~~~ 138 (451)
T 1pw4_A 66 FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS-------SIAVMFVLLFLCGWFQGMGWP 138 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHS-------SSSHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccc-------cHHHHHHHHHHHHHHhhhccc
Confidence 3444566666666777777778877665555566665555555444221 21 123455567778888888877
Q ss_pred chhhhccc-CChH----HHHHHHhhhhhhhHHHHHHH
Q 036062 86 GIVGDLSF-MYPE----FMQSFFAGLAASGALTSGLR 117 (333)
Q Consensus 86 s~~gla~~-~p~~----~~~a~~~Gqg~aGi~~s~~~ 117 (333)
...++.+. +|++ .......+.++++++...+-
T Consensus 139 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 175 (451)
T 1pw4_A 139 PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 175 (451)
T ss_dssp HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred hHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 77777665 4533 33344556666666555443
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=97.54 E-value=0.0023 Score=60.35 Aligned_cols=100 Identities=5% Similarity=-0.135 Sum_probs=60.9
Q ss_pred hhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhh
Q 036062 10 LVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVG 89 (333)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~g 89 (333)
.++.+...+.....-.+.+|...|.-+..+.++..+..++.......+ .++..++.-++.|++.+..+.....
T Consensus 68 ~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~l~G~~~~~~~~~~~~ 140 (438)
T 3o7q_A 68 SAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIM-------NYTLFLVGLFIIAAGLGCLETAANP 140 (438)
T ss_dssp HHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccc-------cHHHHHHHHHHHHhhHHHhhhhHHH
Confidence 344455555556666677887766656666666555554442222221 2455677778889999888888777
Q ss_pred hccc-CChHH----HHHHHhhhhhhhHHHHHH
Q 036062 90 DLSF-MYPEF----MQSFFAGLAASGALTSGL 116 (333)
Q Consensus 90 la~~-~p~~~----~~a~~~Gqg~aGi~~s~~ 116 (333)
+.+. +|++. +.....+.++++++...+
T Consensus 141 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~ 172 (438)
T 3o7q_A 141 FVTVLGPESSGHFRLNLAQTFNSFGAIIAVVF 172 (438)
T ss_dssp HHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766 46443 444556666666665553
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=96.18 E-value=0.058 Score=51.53 Aligned_cols=153 Identities=10% Similarity=-0.014 Sum_probs=76.8
Q ss_pred hhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCC--------CCcchHHHHHHHHHHHhhhh
Q 036062 9 TLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGE--------GGLGPFLGVCVFVALFGVAD 80 (333)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~f~~~l~~v~~~g~~~ 80 (333)
..++.+...+..++.-.+.+|+..|.=+..+.+++.+..++....+...... .-...+...++.=++.|++.
T Consensus 61 ~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~ 140 (491)
T 4gc0_A 61 VASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGV 140 (491)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3345555666666666777777655555556666555555433322110000 00223556667777888888
Q ss_pred HhhccchhhhcccC-ChHHHHHH----HhhhhhhhHHHHHHHHHHHhhccCCccccchhhhHHhHHHHHHHHHHHHHHHH
Q 036062 81 AHVRGGIVGDLSFM-YPEFMQSF----FAGLAASGALTSGLRLLTKAAFEKSHDGLRKGVMLFLAICTSFEFVCILLYAF 155 (333)
Q Consensus 81 ~~~q~s~~gla~~~-p~~~~~a~----~~Gqg~aGi~~s~~~ii~~~~~~~~~~~~~~s~~iyF~~a~~~~~~~~~~~~~ 155 (333)
+........+.+.. |++.-... ..+...+.++..+.........+.. ......-...+.+..+..++.+....
T Consensus 141 G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~- 218 (491)
T 4gc0_A 141 GLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDAS-WLNTDGWRYMFASECIPALLFLMLLY- 218 (491)
T ss_dssp HHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT-TTTTTHHHHHHHTTHHHHHHHHHHGG-
T ss_pred HHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccc-cccchhhHHHhhhhhhhhhhhhhhhh-
Confidence 87777777777664 55443333 3334444444444333332222111 11122333344444444444444444
Q ss_pred HcCCChHH
Q 036062 156 FFPKLPIV 163 (333)
Q Consensus 156 ~l~k~~~~ 163 (333)
.++.+|..
T Consensus 219 ~~peSp~~ 226 (491)
T 4gc0_A 219 TVPESPRW 226 (491)
T ss_dssp GSCCCHHH
T ss_pred cCCCChHH
Confidence 67777754
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=95.05 E-value=0.024 Score=52.25 Aligned_cols=99 Identities=12% Similarity=-0.011 Sum_probs=58.2
Q ss_pred ehhhhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccch
Q 036062 8 LTLVYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGI 87 (333)
Q Consensus 8 ~~~~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~ 87 (333)
+...+.++..+.....-.+.+|...|.-+..+..+..+........+ .++..++..++.|++.+..+...
T Consensus 40 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----------~~~~l~~~~~l~g~~~~~~~~~~ 109 (375)
T 2gfp_A 40 VMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS----------SLTVLIAASAMQGMGTGVGGVMA 109 (375)
T ss_dssp HHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc----------cHHHHHHHHHHHHHHHHhhhhhH
Confidence 33445555556666666677888777666666666655555444332 23445556667787777777776
Q ss_pred hhhcccC-Ch----HHHHHHHhhhhhhhHHHHHH
Q 036062 88 VGDLSFM-YP----EFMQSFFAGLAASGALTSGL 116 (333)
Q Consensus 88 ~gla~~~-p~----~~~~a~~~Gqg~aGi~~s~~ 116 (333)
..+.+.. |+ +.......+.++++++...+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 143 (375)
T 2gfp_A 110 RTLPRDLYERTQLRHANSLLNMGILVSPLLAPLI 143 (375)
T ss_dssp HHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 6666553 32 23455555666665555443
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=94.34 E-value=0.45 Score=45.29 Aligned_cols=98 Identities=10% Similarity=0.121 Sum_probs=52.7
Q ss_pred ehhhhhHHHHHHHHHHHhhhcc-CCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccc
Q 036062 8 LTLVYQPFALGTMAILAYNESK-IDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGG 86 (333)
Q Consensus 8 ~~~~~~~~~l~~~~~~~~~~~~-~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s 86 (333)
+...+.+...+...+.-.+.+| +..|.=+..+.++..+..++.. ..+ .++..++..++.|++.+.....
T Consensus 59 ~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 59 IMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLA---LPF-------GASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH---SCC-------STTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH---Hhh-------hHHHHHHHHHHHHHHHHhccch
Confidence 3344555666666666667777 6655444445554444433322 211 1233455666778888877777
Q ss_pred hhhhccc-CChHH------HHHHHhhhhhhhHHHHH
Q 036062 87 IVGDLSF-MYPEF------MQSFFAGLAASGALTSG 115 (333)
Q Consensus 87 ~~gla~~-~p~~~------~~a~~~Gqg~aGi~~s~ 115 (333)
..++.+. +|++. ...+..+.++++++...
T Consensus 129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 164 (491)
T 4aps_A 129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPL 164 (491)
T ss_dssp HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHH
Confidence 7777664 66433 22233555555555443
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=87.23 E-value=3.9 Score=38.54 Aligned_cols=42 Identities=12% Similarity=0.050 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHH
Q 036062 12 YQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLL 53 (333)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~ 53 (333)
..+..+...++...+.+|+..|...+.+...+.+.+..+...
T Consensus 321 ~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~ 362 (491)
T 4gc0_A 321 VGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTA 362 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHH
Confidence 344455555666677788777777777776666555554443
No 7
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=77.09 E-value=8.2 Score=36.29 Aligned_cols=87 Identities=11% Similarity=-0.023 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHHHhhhccCCCcc-----chHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhcc
Q 036062 11 VYQPFALGTMAILAYNESKIDTRK-----RNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRG 85 (333)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~~~~~~-----Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~ 85 (333)
...+..++...+.-.+.+|...|. ++..+..+..+.+.++........ .+.....+...+...+.|++.+....
T Consensus 327 ~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~g~~~~~~~~ 405 (491)
T 4aps_A 327 LNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYG-TSGKVSPLWLVGSWALVILGEMLISP 405 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCC-CCTTCCTHHHHHHHHHHHHHHHTTTT
T ss_pred cchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCccHHHHHHHHHHHHHHHHHHhH
Confidence 334444444444444445544332 222454444444444333322110 01112233444556666777777666
Q ss_pred chhhhccc-CChHH
Q 036062 86 GIVGDLSF-MYPEF 98 (333)
Q Consensus 86 s~~gla~~-~p~~~ 98 (333)
....+... .|++.
T Consensus 406 ~~~~~~~~~~p~~~ 419 (491)
T 4aps_A 406 VGLSVTTKLAPKAF 419 (491)
T ss_dssp HHHHHHHHHTTTTC
T ss_pred HHHHHHHHhCCHHH
Confidence 66666554 55553
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=73.62 E-value=19 Score=32.90 Aligned_cols=76 Identities=9% Similarity=-0.140 Sum_probs=40.3
Q ss_pred hhhHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccchhhh
Q 036062 11 VYQPFALGTMAILAYNESKIDTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGIVGD 90 (333)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~~~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~gl 90 (333)
.+.+...+..++.-.+.+|++.+.-+..+.++..+.++++...+ .. . .++...+.|++.+......+++
T Consensus 303 ~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--------~~--~-~~~~~~~~g~~~~~~~~~~~~~ 371 (438)
T 3o7q_A 303 GTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG--------GH--V-GLIALTLCSAFMSIQYPTIFSL 371 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC--------HH--H-HHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC--------Cc--H-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666777777555433334443333332222211 11 1 2333456667777777778888
Q ss_pred -cccCChH
Q 036062 91 -LSFMYPE 97 (333)
Q Consensus 91 -a~~~p~~ 97 (333)
...+|++
T Consensus 372 ~~~~~~~~ 379 (438)
T 3o7q_A 372 GIKNLGQD 379 (438)
T ss_dssp HHSSCGGG
T ss_pred HHhhcccc
Confidence 6667766
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=70.94 E-value=17 Score=33.31 Aligned_cols=83 Identities=8% Similarity=-0.010 Sum_probs=38.5
Q ss_pred hhhhHHHHHHHHHHHhhhccC--CCccchHHHHHHHH-HHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccc
Q 036062 10 LVYQPFALGTMAILAYNESKI--DTRKRNITGYIIFF-ASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGG 86 (333)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~~--~~~~Ri~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s 86 (333)
..+.+..++..++.-.+.+|+ +.+..+..+..+.. +.+++ ..... ....+...+...+.|++.+.....
T Consensus 295 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~ 366 (451)
T 1pw4_A 295 FLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIV---YWMNP-----AGNPTVDMICMIVIGFLIYGPVML 366 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHH---TTSCC-----TTCHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH---HHHhc-----ccCHHHHHHHHHHHHHHHhchHHH
Confidence 344455556666666677776 44433333333322 22222 11111 112334445555666666655555
Q ss_pred hhhhcc-cCChHHHH
Q 036062 87 IVGDLS-FMYPEFMQ 100 (333)
Q Consensus 87 ~~gla~-~~p~~~~~ 100 (333)
...+.. .+|++...
T Consensus 367 ~~~~~~~~~~~~~~g 381 (451)
T 1pw4_A 367 IGLHALELAPKKAAG 381 (451)
T ss_dssp HHHHHHHTSCTTHHH
T ss_pred HHHHHHHHhchhhhh
Confidence 555444 46665433
No 10
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=64.27 E-value=37 Score=32.01 Aligned_cols=98 Identities=6% Similarity=-0.003 Sum_probs=53.0
Q ss_pred hhhhhHHHHHHHHHHHhhhccC-CCccchHHHHHHHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhhhHhhccch
Q 036062 9 TLVYQPFALGTMAILAYNESKI-DTRKRNITGYIIFFASTLALLLLDLATSGEGGLGPFLGVCVFVALFGVADAHVRGGI 87 (333)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~~-~~~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~ 87 (333)
...+.+...+.....-.+.+|. ..|.-+..+.++..+..++....+ ..++..++..++.|++.+......
T Consensus 60 ~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 60 FHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE---------HSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp HHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS---------SCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc---------ccHHHHHHHHHHHHHhccccchhH
Confidence 3344555555556666677777 655544455555444443332221 013345556667788888777776
Q ss_pred hhhccc-CChHH----HHH---HHhhhhhhhHHHHH
Q 036062 88 VGDLSF-MYPEF----MQS---FFAGLAASGALTSG 115 (333)
Q Consensus 88 ~gla~~-~p~~~----~~a---~~~Gqg~aGi~~s~ 115 (333)
.++.+. +|++. ... ...+.++++.+...
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~ 166 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASL 166 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555 56543 233 45555555555443
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=50.98 E-value=21 Score=33.82 Aligned_cols=48 Identities=8% Similarity=-0.125 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhhhHhhccchhhhccc-CChH----HHHHHHhhhhhhhHHHHH
Q 036062 68 GVCVFVALFGVADAHVRGGIVGDLSF-MYPE----FMQSFFAGLAASGALTSG 115 (333)
Q Consensus 68 ~~l~~v~~~g~~~~~~q~s~~gla~~-~p~~----~~~a~~~Gqg~aGi~~s~ 115 (333)
..++..++.|++.+........+... .|++ .+......+++++.+...
T Consensus 407 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~ 459 (524)
T 2xut_A 407 WQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLL 459 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34445666677777666666665554 5544 344455555566655544
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=42.59 E-value=24 Score=32.59 Aligned_cols=27 Identities=11% Similarity=0.060 Sum_probs=13.4
Q ss_pred HHHHHHHHhhhccCCCccchHHHHHHH
Q 036062 17 LGTMAILAYNESKIDTRKRNITGYIIF 43 (333)
Q Consensus 17 l~~~~~~~~~~~~~~~~~Ri~~~l~~~ 43 (333)
.+...+.-++.+|+..+..+..+..+.
T Consensus 273 ~~~~~~~g~l~dr~g~~~~l~~~~~~~ 299 (417)
T 2cfq_A 273 ASIMFFAPLIINRIGGKNALLLAGTIM 299 (417)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 334455556666765444444444433
Done!