BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036063
(108 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UMZ|B Chain B, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UN1|A Chain A, Xyloglucan Endotransglycosylase Native Structure.
pdb|1UN1|B Chain B, Xyloglucan Endotransglycosylase Native Structure
Length = 278
Score = 139 bits (349), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 70/121 (57%), Positives = 81/121 (66%), Gaps = 13/121 (10%)
Query: 1 IDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDLTADFHTYSILWNPQRIVFSVDG 60
IDFEFLGN +G PY L TNVFT GKGDREQ+ +LWFD T +FH YS+LWN IVF VD
Sbjct: 92 IDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHYYSVLWNMYMIVFLVDD 151
Query: 61 TPIREFKNSESIGVPFLKNQPMRI-------------GGLIKTQWTHAPFAASYRNFNAD 107
PIR FKN + +GV F NQPM+I GGL KT W+ APF ASYR+F+ D
Sbjct: 152 VPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYRSFHID 211
Query: 108 A 108
Sbjct: 212 G 212
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
pdb|2VH9|B Chain B, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
Length = 290
Score = 95.9 bits (237), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 60/118 (50%), Gaps = 16/118 (13%)
Query: 1 IDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDLTADFHTYSILWNPQRIVFSVDG 60
ID EFLG + G PYTL TNVF G GDRE + HLWFD T D+H Y+I W P I+F VD
Sbjct: 119 IDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIHLWFDPTQDYHNYAIYWTPSEIIFFVDD 178
Query: 61 TPIREFKNSESIGVPFLKNQPMRIGGLI-------------KTQWTHAPFAASYRNFN 105
PIR + P +P+ + G + K + + PF Y +F
Sbjct: 179 VPIRRYPRKSDATFPL---RPLWVYGSVWDASSWATENGKYKADYRYQPFVGKYEDFK 233
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
pdb|2UWB|B Chain B, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
Length = 267
Score = 95.5 bits (236), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 60/118 (50%), Gaps = 16/118 (13%)
Query: 1 IDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDLTADFHTYSILWNPQRIVFSVDG 60
ID EFLG + G PYTL TNVF G GDRE + HLWFD T D+H Y+I W P I+F VD
Sbjct: 96 IDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIHLWFDPTQDYHNYAIYWTPSEIIFFVDD 155
Query: 61 TPIREFKNSESIGVPFLKNQPMRIGGLI-------------KTQWTHAPFAASYRNFN 105
PIR + P +P+ + G + K + + PF Y +F
Sbjct: 156 VPIRRYPRKSDATFPL---RPLWVYGSVWDASSWATENGKYKADYRYQPFVGKYEDFK 210
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
pdb|2UWC|B Chain B, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
Length = 271
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 60/123 (48%), Gaps = 21/123 (17%)
Query: 1 IDFEFLGNLSGDPYTLHTNVFTNGKGD-----REQQFHLWFDLTADFHTYSILWNPQRIV 55
ID EFLG + G PYTL TNVF G GD RE + HLWFD T D+H Y+I W P I+
Sbjct: 95 IDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGRELRIHLWFDPTQDYHNYAIYWTPSEII 154
Query: 56 FSVDGTPIREFKNSESIGVPFLKNQPMRIGGLI-------------KTQWTHAPFAASYR 102
F VD PIR + P +PM + G + K + + PF Y
Sbjct: 155 FFVDDVPIRRYPRKSDATFPL---RPMWVYGSVWDASSWATENGKYKADYRYQPFVGKYE 211
Query: 103 NFN 105
+F
Sbjct: 212 DFK 214
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|B Chain B, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|C Chain C, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
Length = 274
Score = 89.4 bits (220), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 60/123 (48%), Gaps = 21/123 (17%)
Query: 1 IDFEFLGNLSGDPYTLHTNVFTNGKGD-----REQQFHLWFDLTADFHTYSILWNPQRIV 55
ID EFLG + G PYTL TNVF G GD RE + HLWFD T D+H Y+I W P I+
Sbjct: 98 IDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGREMRIHLWFDPTQDYHNYAIYWTPSEII 157
Query: 56 FSVDGTPIREFKNSESIGVPFLKNQPMRIGGLI-------------KTQWTHAPFAASYR 102
F VD PIR + P +P+ + G + K + + PF Y
Sbjct: 158 FFVDDVPIRRYPRKSDATFPL---RPLWVYGSVWDASSWATENGKYKADYRYQPFVGKYE 214
Query: 103 NFN 105
+F
Sbjct: 215 DFK 217
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase
Length = 214
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 1 IDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDLTADFHTYSILWNPQRIVFSVDG 60
ID EFLG D + N +TNG G+ E+ +L FD +HTY+ W P I + VDG
Sbjct: 106 IDIEFLGK---DTTKVQFNYYTNGVGNHEKIVNLGFDAANSYHTYAFDWQPNSIKWYVDG 162
Query: 61 TPIREFKNSESIGVP 75
+ K++ + +P
Sbjct: 163 ----QLKHTATTQIP 173
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
pdb|3D6E|B Chain B, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
Length = 201
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 1 IDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDLTADFHTYSILWNPQRIVFSVDG 60
ID EFLG D + N +TNG G+ E+ +L FD +HTY+ W P I + VDG
Sbjct: 93 IDIEFLGK---DTTKVQFNYYTNGVGNHEKIVNLGFDAANSYHTYAFDWQPNSIKWYVDG 149
Query: 61 TPIREFKNSESIGVP 75
+ K++ + +P
Sbjct: 150 ----QLKHTATTQIP 160
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 214
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 1 IDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDLTADFHTYSILWNPQRIVFSVDG 60
ID EFLG D + N +TNG G E+ L FD + FHTY+ W P I + VDG
Sbjct: 48 IDIEFLGK---DTTKVQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG 104
Query: 61 TPIREFKNSESIGVPFLKNQPM 82
K++ + +P + M
Sbjct: 105 V----LKHTATANIPSTPGKIM 122
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 1 IDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDLTADFHTYSILWNPQRIVFSVDG 60
ID EFLG D + N +TNG G E+ L FD + FHTY+ W P I + VDG
Sbjct: 48 IDIEFLGK---DTTKVQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG 104
Query: 61 TPIREFKNSESIGVPFLKNQPM 82
K++ + +P + M
Sbjct: 105 V----LKHTATANIPSTPGKIM 122
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
pdb|1AJK|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
Length = 214
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 1 IDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDLTADFHTYSILWNPQRIVFSVDG 60
ID EFLG D + N +TNG G E+ L FD + FHTY+ W P I + VDG
Sbjct: 23 IDIEFLGK---DTTKVQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG 79
Query: 61 TPIREFKNSESIGVPFLKNQPM 82
K++ + +P + M
Sbjct: 80 V----LKHTATANIPSTPGKIM 97
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus
(1-3,1-4)- Beta-Glucanase
pdb|1GLH|A Chain A, Cation Binding To A Bacillus (1,3-1,4)-Beta-Glucanase.
Geometry, Affinity And Effect On Protein Stability
pdb|2AYH|A Chain A, Crystal And Molecular Structure At 1.6 Angstroms
Resolution Of The Hybrid Bacillus
Endo-1,3-1,4-Beta-D-Glucan 4- Glucanohydrolase H(A16-M)
Length = 214
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 1 IDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDLTADFHTYSILWNPQRIVFSVDG 60
ID EFLG D + N +TNG G E+ L FD + FHTY+ W P I + VDG
Sbjct: 106 IDIEFLGK---DTTKVQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG 162
Query: 61 TPIREFKNSESIGVPFLKNQPM 82
K++ + +P + M
Sbjct: 163 V----LKHTATANIPSTPGKIM 180
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
pdb|1MAC|B Chain B, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
Length = 212
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 1 IDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDLTADFHTYSILWNPQRIVFSVDG 60
ID EFLG D + N +TNG G E+ L FD + FHTY+ W P I + VDG
Sbjct: 104 IDIEFLGK---DTTKVQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG 160
Query: 61 TPIREFKNSESIGVPFLKNQPM 82
K++ + +P + M
Sbjct: 161 V----LKHTATANIPSTPGKIM 178
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 208
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 1 IDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDLTADFHTYSILWNPQRIVFSVDG 60
ID EFLG D + N +TNG G E+ L FD + FHTY+ W P I + VDG
Sbjct: 48 IDIEFLGK---DTTKVQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG 104
Query: 61 TPIREFKNSESIGVPFLKNQPM 82
K++ + +P + M
Sbjct: 105 V----LKHTATANIPSTPGKIM 122
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 1 IDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDLTADFHTYSILWNPQRIVFSVDG 60
ID EFLG D + N +TN G+ E + L FD + DFH Y+ W P I + VDG
Sbjct: 126 IDIEFLGK---DTTKVQFNYYTNSAGNHEYIYDLRFDASEDFHIYAFNWQPNYIAWLVDG 182
Query: 61 TPI 63
+
Sbjct: 183 EEV 185
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From
Bacillus Subtilis (Strain 168)
Length = 238
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 1 IDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDLTADFHTYSILWNPQRIVFSVDG 60
ID EFLG D + N +TNG G+ E+ L FD +HTY+ W P I + VDG
Sbjct: 130 IDIEFLGK---DTTKVQFNYYTNGAGNHEKIVDLGFDAANAYHTYAFDWQPNSIKWYVDG 186
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|B Chain B, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|C Chain C, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|D Chain D, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
Length = 214
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 1 IDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDLTADFHTYSILWNPQRIVFSVDG 60
ID +FLG D + N +TNG G E+ L FD + FHTY+ W P I + VDG
Sbjct: 106 IDIQFLGK---DTTKVQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG 162
Query: 61 TPIREFKNSESIGVPFLKNQPM 82
K++ + +P + M
Sbjct: 163 V----LKHTATANIPSTPGKIM 180
>pdb|2VY0|A Chain A, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
pdb|2VY0|B Chain B, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
Length = 264
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 3 FEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWF------DLTADFHTYSILWNPQRIVF 56
EFLG+ +P T+H V G + + D T DFH + I+W P +I +
Sbjct: 141 MEFLGH---EPRTIHGTVHGPGYSGSKGITRAYTLPEGVPDFTEDFHVFGIVWYPDKIKW 197
Query: 57 SVDGTPIREF--KNSESIGVPFLKNQPMRI 84
VDGT E + E++G ++ ++P I
Sbjct: 198 YVDGTFYHEVTKEQVEAMGYEWVFDKPFYI 227
>pdb|2HYK|A Chain A, The Crystal Structure Of An Endo-Beta-1,3-Glucanase From
Alkaliphilic Nocardiopsis Sp.Strain F96
Length = 245
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 27/40 (67%)
Query: 42 FHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFLKNQP 81
FHT+++ W P I +SVDG + + ++++ G P++ +QP
Sbjct: 168 FHTFAVDWRPGSITWSVDGVAYQTYTSADTRGNPWVFDQP 207
>pdb|3HR9|A Chain A, The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-
Glucanase F40i Mutant
Length = 241
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 1 IDFEFLGNLSGDPYTLHTNVFTNGKG-DREQQFHLWFDLTAD--FHTYSILWNPQRIVFS 57
+D E LG +P + +N+ T G + + H AD FHTY + W P + ++
Sbjct: 55 VDIEVLGK---NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWT 111
Query: 58 VDGTPIREFKNSE 70
VDG +R+ + +
Sbjct: 112 VDGQEVRKTEGGQ 124
>pdb|1MVE|A Chain A, Crystal Structure Of A Natural Circularly-Permutated
Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From
Fibrobacter Succinogenes
Length = 243
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 1 IDFEFLGNLSGDPYTLHTNVFTNGKG-DREQQFHLWFDLTAD--FHTYSILWNPQRIVFS 57
+D E LG +P + +N+ T G + + H AD FHTY + W P + ++
Sbjct: 57 VDIEVLGK---NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWT 113
Query: 58 VDGTPIREFKNSE 70
VDG +R+ + +
Sbjct: 114 VDGQEVRKTEGGQ 126
>pdb|3H0O|A Chain A, The Importance Of Ch-Pi Stacking Interactions Between
Carbohydrate And Aromatic Residues In Truncated
Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase
Length = 240
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 1 IDFEFLGNLSGDPYTLHTNVFTNGKG-DREQQFHLWFDLTAD--FHTYSILWNPQRIVFS 57
+D E LG +P + +N+ T G + + H AD FHTY + W P + ++
Sbjct: 54 VDIEVLGK---NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWT 110
Query: 58 VDGTPIREFKNSE 70
VDG +R+ + +
Sbjct: 111 VDGQEVRKTEGGQ 123
>pdb|1ZM1|A Chain A, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
pdb|1ZM1|B Chain B, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
Length = 241
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 1 IDFEFLGNLSGDPYTLHTNVFTNGKG-DREQQFHLWFDLTAD--FHTYSILWNPQRIVFS 57
+D E LG +P + +N+ T G + + H AD FHTY + W P + ++
Sbjct: 54 VDIEVLGK---NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWT 110
Query: 58 VDGTPIREFKNSE 70
VDG +R+ + +
Sbjct: 111 VDGQEVRKTEGGQ 123
>pdb|2R49|A Chain A, Mutational And Structural Studies Of E85i Reveal The
Flexible Loops Of Fibrobacter Succinogenes
1,3-1,4-beta-d- Glucanaseglucanase
Length = 241
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 1 IDFEFLGNLSGDPYTLHTNVFTNGKGDREQQF-HLWFDLTAD--FHTYSILWNPQRIVFS 57
+D E LG +P + +N+ T G ++ H AD FHTY + W P + ++
Sbjct: 55 VDIEVLGK---NPGSFQSNIITGKAGAQKTSIKHHAVSPAADQAFHTYGLEWTPNYVRWT 111
Query: 58 VDGTPIREFKNSE 70
VDG +R+ + +
Sbjct: 112 VDGQEVRKTEGGQ 124
>pdb|3AXD|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXD|B Chain B, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXE|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN COMPLEX WITH
CELLOTETRAOSE (CELLOBIOSE DENSITY WAS Observed)
Length = 249
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 1 IDFEFLGNLSGDPYTLHTNVFTNGKG-DREQQFHLWFDLTAD--FHTYSILWNPQRIVFS 57
+D E LG P + +N+ T G + + H AD FHTY + W P + ++
Sbjct: 57 VDIEVLGK---SPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWT 113
Query: 58 VDGTPIREFKNSE 70
VDG +R+ + +
Sbjct: 114 VDGQEVRKTEGGQ 126
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
pdb|1AJO|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
Length = 214
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 26 GDREQQFHLWFDLTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFLKNQPM 82
G E+ L FD + FHTY+ W P I + VDG K++ + +P + M
Sbjct: 2 GGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIPSTPGKIM 54
>pdb|1DYP|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose 4 Galactohydrolase
Length = 271
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 32 FHLWFDLTADFHTYSILWNPQRIVFSVDGTPIREFKN 68
+HL FD DFHTY + +I + VDG + E N
Sbjct: 182 YHLPFDPRNDFHTYGVNVTKDKITWYVDGEIVGEKDN 218
>pdb|3MQL|A Chain A, Crystal Structure Of The Fibronectin 6fni1-2fnii7fni
Fragment
Length = 220
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 14/111 (12%)
Query: 5 FLGNLSGDP----YTLHTNVFTNGKGDREQQFHLWFDLTADFHTYSILWNPQRIVFSVDG 60
+ GN +G+P +T + F + + Q HLW T+++ Q+ F D
Sbjct: 47 YGGNSNGEPCVLPFTYNGRTFYSCTTEGRQDGHLWCSTTSNYE------QDQKYSFCTDH 100
Query: 61 TPIREFKNSESIGV----PFLKNQPMRIGGLIKTQWTHAPFAASYRNFNAD 107
T + + + S G PFL N + + + + + +N++AD
Sbjct: 101 TVLVQTRGGNSNGALCHFPFLYNNHNYTDCTSEGRRDNMKWCGTTQNYDAD 151
>pdb|3M7P|A Chain A, Fibronectin Fragment
Length = 308
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 14/111 (12%)
Query: 5 FLGNLSGDP----YTLHTNVFTNGKGDREQQFHLWFDLTADFHTYSILWNPQRIVFSVDG 60
+ GN +G+P +T + F + + Q HLW T+++ Q+ F D
Sbjct: 55 YGGNSNGEPCVLPFTYNGRTFYSCTTEGRQDGHLWCSTTSNYE------QDQKYSFCTDH 108
Query: 61 TPIREFKNSESIGV----PFLKNQPMRIGGLIKTQWTHAPFAASYRNFNAD 107
T + + + S G PFL N + + + + + +N++AD
Sbjct: 109 TVLVQTRGGNSNGALCHFPFLYNNHNYTDCTSEGRRDNMKWCGTTQNYDAD 159
>pdb|1E88|A Chain A, Solution Structure Of 6f11f22f2, A Compact Three-Module
Fragment Of The Gelatin-Binding Domain Of Human
Fibronectin
pdb|1E8B|A Chain A, Solution Structure Of 6f11f22f2, A Compact Three-Module
Fragment Of The Gelatin-Binding Domain Of Human
Fibronectin
Length = 160
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 14/111 (12%)
Query: 5 FLGNLSGDP----YTLHTNVFTNGKGDREQQFHLWFDLTADFHTYSILWNPQRIVFSVDG 60
+ GN +G+P +T + F + + Q HLW T+++ Q+ F D
Sbjct: 47 YGGNSNGEPCVLPFTYNGRTFYSCTTEGRQDGHLWCSTTSNYE------QDQKYSFCTDH 100
Query: 61 TPIREFKNSESIGV----PFLKNQPMRIGGLIKTQWTHAPFAASYRNFNAD 107
T + + + S G PFL N + + + + + +N++AD
Sbjct: 101 TVLVQTRGGNSNGALCHFPFLYNNHNYTDCTSEGRRDNMKWCGTTQNYDAD 151
>pdb|3ILN|A Chain A, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
pdb|3ILN|B Chain B, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
Length = 251
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 41 DFHTYSILWNPQRIVFSVDGTPIREFKNS 69
DFH Y+I W P+ I + VD + F N
Sbjct: 166 DFHVYAIEWTPEEIRWFVDDSLYYRFPNE 194
>pdb|4DFS|A Chain A, Structure Of The Catalytic Domain Of An
Endo-1,3-Beta-Glucanase (Laminarinase) From Thermotoga
Petrophila Rku-1
pdb|4DFS|B Chain B, Structure Of The Catalytic Domain Of An
Endo-1,3-Beta-Glucanase (Laminarinase) From Thermotoga
Petrophila Rku-1
Length = 267
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 37 DLTADFHTYSILWNPQRIVFSVDGTPIREFKNSE--SIGVPFLKNQP 81
D + DFH +SI W+ + + VDG E +G+ ++ + P
Sbjct: 181 DFSEDFHIFSIEWDEDEVEWYVDGQLYHVLSKDELAELGLEWVFDHP 227
>pdb|3AZX|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZX|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZZ|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3B00|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B01|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
Length = 272
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 37 DLTADFHTYSILWNPQRIVFSVDGTPIREFKNSE--SIGVPFLKNQP 81
D + DFH +SI W+ + + VDG E +G+ ++ + P
Sbjct: 173 DFSEDFHIFSIEWDEDEVEWYVDGQLYHVLSKDELAELGLEWVFDHP 219
>pdb|3ATG|A Chain A, Endo-1,3-Beta-Glucanase From Cellulosimicrobium Cellulans
Length = 256
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 2 DFEFLGNLSGDPYTLHTNV----FTNGKGDREQQFH-LWFDLTADFHTYSILWNPQRIVF 56
+ + + N+ +P+ +H V ++ G G H + FHT+++ W P I +
Sbjct: 119 EIDIMENVGFEPHRVHGTVHGPGYSGGSGITGMYQHPQGWSFADTFHTFAVDWKPGEITW 178
Query: 57 SVDG 60
VDG
Sbjct: 179 FVDG 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,708,920
Number of Sequences: 62578
Number of extensions: 145257
Number of successful extensions: 224
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 191
Number of HSP's gapped (non-prelim): 35
length of query: 108
length of database: 14,973,337
effective HSP length: 72
effective length of query: 36
effective length of database: 10,467,721
effective search space: 376837956
effective search space used: 376837956
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)