Query 036063
Match_columns 108
No_of_seqs 116 out of 1051
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 09:02:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036063.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036063hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02176 GH16_XET Xyloglucan en 100.0 2.8E-32 6E-37 202.4 12.0 108 1-108 82-202 (263)
2 PLN03161 Probable xyloglucan e 100.0 1.1E-31 2.3E-36 201.2 11.3 108 1-108 102-222 (291)
3 cd02183 GH16_fungal_CRH1_trans 99.9 2.9E-26 6.2E-31 164.9 11.0 104 1-108 76-201 (203)
4 cd02178 GH16_beta_agarase Beta 99.9 3.3E-23 7.1E-28 153.1 10.4 104 1-106 129-256 (258)
5 cd02175 GH16_lichenase lichena 99.9 2.8E-22 6E-27 144.3 11.1 99 1-107 102-211 (212)
6 cd08023 GH16_laminarinase_like 99.9 9.7E-22 2.1E-26 142.7 10.9 103 1-106 116-234 (235)
7 PF00722 Glyco_hydro_16: Glyco 99.9 2.9E-21 6.3E-26 135.1 9.4 102 1-105 80-185 (185)
8 cd02177 GH16_kappa_carrageenas 99.8 4.3E-20 9.2E-25 137.8 10.6 98 1-106 133-267 (269)
9 cd02182 GH16_Strep_laminarinas 99.8 8.1E-20 1.8E-24 135.1 9.4 102 1-106 131-257 (259)
10 cd00413 Glyco_hydrolase_16 gly 99.8 1.8E-19 3.8E-24 128.1 10.4 96 1-106 101-209 (210)
11 cd02180 GH16_fungal_KRE6_gluca 99.8 1.4E-19 3.1E-24 136.5 10.0 69 38-106 206-293 (295)
12 cd08024 GH16_CCF Coelomic cyto 99.8 5.5E-19 1.2E-23 135.0 11.0 84 1-84 151-268 (330)
13 cd02179 GH16_beta_GRP beta-1,3 99.7 3.1E-17 6.8E-22 125.0 8.5 49 36-84 196-260 (321)
14 COG2273 SKN1 Beta-glucanase/Be 99.5 2.9E-13 6.4E-18 104.5 8.6 100 1-106 153-262 (355)
15 PF03935 SKN1: Beta-glucan syn 99.0 7E-10 1.5E-14 88.7 6.6 66 40-106 366-451 (504)
16 PF13385 Laminin_G_3: Concanav 97.0 0.0023 5E-08 41.7 5.9 64 38-106 83-146 (157)
17 cd00110 LamG Laminin G domain; 96.4 0.019 4.1E-07 37.8 6.6 67 39-106 79-150 (151)
18 smart00560 LamGL LamG-like jel 96.0 0.04 8.7E-07 36.5 6.8 65 37-106 58-125 (133)
19 PF09264 Sial-lect-inser: Vibr 93.9 0.11 2.5E-06 37.2 4.3 29 40-68 92-122 (198)
20 cd00152 PTX Pentraxins are pla 93.0 0.48 1E-05 33.6 6.4 64 38-106 88-160 (201)
21 PF02210 Laminin_G_2: Laminin 93.0 0.25 5.5E-06 31.2 4.5 70 38-107 52-126 (128)
22 smart00282 LamG Laminin G doma 92.9 0.42 9.2E-06 31.1 5.6 67 39-106 61-132 (135)
23 cd02181 GH16_fungal_Lam16A_glu 92.8 0.26 5.6E-06 37.6 4.9 19 40-58 179-197 (293)
24 smart00210 TSPN Thrombospondin 90.8 1.3 2.8E-05 31.0 6.5 66 38-106 115-180 (184)
25 PF06439 DUF1080: Domain of Un 90.3 0.79 1.7E-05 31.3 4.9 62 37-107 124-185 (185)
26 smart00159 PTX Pentraxin / C-r 89.2 2 4.3E-05 30.6 6.4 64 38-106 88-160 (206)
27 PF00054 Laminin_G_1: Laminin 84.2 6.9 0.00015 25.6 6.5 68 39-106 52-125 (131)
28 PF09224 DUF1961: Domain of un 83.7 7 0.00015 28.7 6.8 62 37-106 157-218 (218)
29 PF14099 Polysacc_lyase: Polys 78.7 2.9 6.2E-05 29.7 3.4 65 38-106 150-224 (224)
30 PF02973 Sialidase: Sialidase, 65.2 31 0.00067 24.8 6.0 68 39-106 102-172 (190)
31 PF12248 Methyltransf_FA: Farn 61.2 30 0.00066 21.8 4.9 31 38-68 50-82 (102)
32 PF06832 BiPBP_C: Penicillin-B 56.8 9.8 0.00021 23.2 2.0 17 52-68 43-59 (89)
33 PF07691 PA14: PA14 domain; I 54.5 29 0.00064 22.3 4.2 31 38-69 57-87 (145)
34 PF00354 Pentaxin: Pentaxin fa 42.5 66 0.0014 22.8 4.6 29 37-65 81-111 (195)
35 KOG1834 Calsyntenin [Extracell 41.4 32 0.00069 29.7 3.2 46 34-84 436-481 (952)
36 cd05885 Ig2_Necl-4 Second immu 37.5 31 0.00068 21.0 2.0 16 51-66 14-29 (80)
37 PF13510 Fer2_4: 2Fe-2S iron-s 35.3 34 0.00073 20.8 1.9 17 52-68 2-18 (82)
38 smart00758 PA14 domain in bact 34.2 80 0.0017 20.3 3.8 28 38-66 55-82 (136)
39 PF08787 Alginate_lyase2: Algi 31.9 1.4E+02 0.003 21.7 5.0 67 40-107 164-235 (236)
40 PF02057 Glyco_hydro_59: Glyco 25.3 2.2E+02 0.0047 24.5 5.6 58 39-108 610-667 (669)
41 PF08154 NLE: NLE (NUC135) dom 25.3 70 0.0015 18.5 2.1 18 48-65 42-59 (65)
42 PF13018 ESPR: Extended Signal 24.0 80 0.0017 15.0 1.7 16 43-58 3-18 (24)
43 COG4894 Uncharacterized conser 23.9 89 0.0019 21.8 2.6 35 36-73 15-52 (159)
44 PF06236 MelC1: Tyrosinase co- 23.0 86 0.0019 21.1 2.3 20 52-71 69-88 (125)
45 PF10646 Germane: Sporulation 22.8 68 0.0015 20.0 1.8 16 51-66 101-116 (117)
46 cd05752 Ig1_FcgammaR_like Frst 21.7 91 0.002 18.4 2.1 14 50-63 29-42 (78)
47 PF11720 Inhibitor_I78: Peptid 21.2 69 0.0015 18.3 1.5 16 46-61 36-51 (60)
48 cd04978 Ig4_L1-NrCAM_like Four 21.0 84 0.0018 17.6 1.8 14 53-66 17-30 (76)
49 PF13464 DUF4115: Domain of un 20.9 1.8E+02 0.0038 17.1 3.3 32 53-84 10-42 (77)
50 PF08292 RNA_pol_Rbc25: RNA po 20.6 96 0.0021 20.5 2.2 18 51-68 64-81 (122)
51 cd04971 Ig_TrKABC_d5 Fifth dom 20.5 78 0.0017 18.8 1.7 13 53-65 14-26 (81)
52 PF12197 lci: Bacillus cereus 20.3 49 0.0011 18.3 0.6 19 45-63 12-30 (45)
53 cd05867 Ig4_L1-CAM_like Fourth 20.3 87 0.0019 17.9 1.8 13 53-65 17-29 (76)
54 PF06289 FlbD: Flagellar prote 20.2 1.7E+02 0.0037 17.0 3.0 27 40-66 15-41 (60)
55 PF07230 Peptidase_S80: Bacter 20.1 35 0.00075 28.1 0.0 12 55-66 142-153 (501)
No 1
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
Probab=99.98 E-value=2.8e-32 Score=202.42 Aligned_cols=108 Identities=66% Similarity=1.210 Sum_probs=98.1
Q ss_pred CceeeecCCCCCceEEEeeeeecCcCCceeEEEecccCCCCceeEEEEecCCeEEEEECCeeeeEecCCCccCCCCCCCC
Q 036063 1 IDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDLTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFLKNQ 80 (108)
Q Consensus 1 IDmE~lG~~~~~~~~v~tn~~~~~~~~~~~~~~~~~~~~~~fH~Y~ieW~p~~I~~yvDg~~~~~~~~~~~~~~~wPfd~ 80 (108)
||||+||++++++.++|+|+|..+.++++..+.+.++++++||+|+|+|+|++|+|||||++++++++.+..+.+|||++
T Consensus 82 ID~E~lGn~~g~~~~~qtnv~~~g~g~r~~~~~l~fdpt~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~ 161 (263)
T cd02176 82 IDFEFLGNVTGQPYTLQTNVFANGVGGREQRIYLWFDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYPSSQ 161 (263)
T ss_pred EEEEEecccCCCceEEEEEEeCCCCCCCceeeecCCCCCCCeEEEEEEEccceEEEEECCEEEEEEecccccCCCCCccc
Confidence 89999999877788999999988877777777788999999999999999999999999999999998876677899999
Q ss_pred ceee-------------CcEeeecCCCCCeEEEecCceecC
Q 036063 81 PMRI-------------GGLIKTQWTHAPFAASYRNFNADA 108 (108)
Q Consensus 81 p~~l-------------gG~~~~d~~~~P~~~~~~~v~~~~ 108 (108)
||+| ||..++||+.+||+|.|++|+|.+
T Consensus 162 Pm~l~~niW~g~~WAt~gG~~~~d~~~aPf~a~~~~~~~~~ 202 (263)
T cd02176 162 PMGVYASIWDGSDWATQGGRVKIDWSYAPFVASYRDFKLDG 202 (263)
T ss_pred eEEEEEeeEcCCCcccCCCcccccCCCCCeeEEEeeEEEee
Confidence 9999 566679999999999999999864
No 2
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=99.97 E-value=1.1e-31 Score=201.17 Aligned_cols=108 Identities=60% Similarity=1.109 Sum_probs=98.5
Q ss_pred CceeeecCCCCCceEEEeeeeecCcCCceeEEEecccCCCCceeEEEEecCCeEEEEECCeeeeEecCCCccCCCCCCCC
Q 036063 1 IDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDLTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFLKNQ 80 (108)
Q Consensus 1 IDmE~lG~~~~~~~~v~tn~~~~~~~~~~~~~~~~~~~~~~fH~Y~ieW~p~~I~~yvDg~~~~~~~~~~~~~~~wPfd~ 80 (108)
||||+||++++.++++|+|+|..+.+.++.++.+.++++++||+|+|+|+|++|+|||||+++|++.+.+..+.+||+++
T Consensus 102 IDiEfLG~~~g~~~~vqtN~y~~g~g~re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVDG~~iRt~~~~~~~g~~yP~~~ 181 (291)
T PLN03161 102 IDFEFLGNVSGQPYTIHTNIYTQGNGSREQQFRPWFDPTADFHNYTIHWNPSEVVWYVDGTPIRVFRNYENEGIAYPNKQ 181 (291)
T ss_pred EEEEecCCCCCCceEEEeceEeCCcCCcceeccccCCCccCcEEEEEEEchhhEEEEECCEEEEEEEcccccCCcCCCcc
Confidence 89999999877888999999998888777777888999999999999999999999999999999988766667899999
Q ss_pred ceee-------------CcEeeecCCCCCeEEEecCceecC
Q 036063 81 PMRI-------------GGLIKTQWTHAPFAASYRNFNADA 108 (108)
Q Consensus 81 p~~l-------------gG~~~~d~~~~P~~~~~~~v~~~~ 108 (108)
||+| ||..++||+.+||+|.++++++++
T Consensus 182 pM~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~ 222 (291)
T PLN03161 182 GMRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARA 222 (291)
T ss_pred ceEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEe
Confidence 9999 677789999999999999999864
No 3
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=99.94 E-value=2.9e-26 Score=164.85 Aligned_cols=104 Identities=30% Similarity=0.558 Sum_probs=84.4
Q ss_pred CceeeecCCCCCceEEEeeeeecCcC---CceeEEEecccCCCCceeEEEEecCCeEEEEECCeeeeEecCCCc-cCCCC
Q 036063 1 IDFEFLGNLSGDPYTLHTNVFTNGKG---DREQQFHLWFDLTADFHTYSILWNPQRIVFSVDGTPIREFKNSES-IGVPF 76 (108)
Q Consensus 1 IDmE~lG~~~~~~~~v~tn~~~~~~~---~~~~~~~~~~~~~~~fH~Y~ieW~p~~I~~yvDg~~~~~~~~~~~-~~~~w 76 (108)
||+|++|+++ ..+|+++|..+.. .++..+.+.++.+++||+|+|+|+|++|+|||||++++++++++. .+..|
T Consensus 76 IDIE~~G~~~---~~~~tn~~~~g~~~~~~~~~~~~~~~~~~~dFHtY~veWtpd~I~~yVDG~~v~~~~~~~~~~~~~~ 152 (203)
T cd02183 76 IDWEWVGGDL---TQVQTNYFGKGNTTTYDRGGYHPVPNPQTEEFHTYTIDWTKDRITWYIDGKVVRTLTKADTTGGYGY 152 (203)
T ss_pred EEEEecCCCC---CEEEeEEECCCCCCCCCCceEeeCCCCCCcCcEEEEEEEecCEEEEEECCEEEEEEehhhcccCCCC
Confidence 8999999754 4999999876543 233445566788899999999999999999999999999998653 24679
Q ss_pred CCCCceee------CcE------------eeecCCCCCeEEEecCceecC
Q 036063 77 LKNQPMRI------GGL------------IKTQWTHAPFAASYRNFNADA 108 (108)
Q Consensus 77 Pfd~p~~l------gG~------------~~~d~~~~P~~~~~~~v~~~~ 108 (108)
| ++||+| ||. ..+||+.+|++|+||+|||++
T Consensus 153 p-~~P~~l~ln~W~gg~~~~~~g~~~WaGg~~d~~~~P~~~~vd~v~v~~ 201 (203)
T cd02183 153 P-QTPMRLQIGIWAGGDPSNAPGTIEWAGGETDYDKGPFTMYVKSVTVTD 201 (203)
T ss_pred C-CCCcEEEEEEecCCCccccCCcccCCCCccCCCCCCEEEEEEEEEEEe
Confidence 9 499999 441 137899999999999999974
No 4
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=99.90 E-value=3.3e-23 Score=153.06 Aligned_cols=104 Identities=23% Similarity=0.273 Sum_probs=78.2
Q ss_pred Cc-eeeecCCCC--CceEEEeeeeecCcC----Cc----eeEEEecccCCCCceeEEEEec-CCeEEEEECCeeeeEecC
Q 036063 1 ID-FEFLGNLSG--DPYTLHTNVFTNGKG----DR----EQQFHLWFDLTADFHTYSILWN-PQRIVFSVDGTPIREFKN 68 (108)
Q Consensus 1 ID-mE~lG~~~~--~~~~v~tn~~~~~~~----~~----~~~~~~~~~~~~~fH~Y~ieW~-p~~I~~yvDg~~~~~~~~ 68 (108)
|| ||++|.+++ .+..+|+++|.-... .. ...+....+++++||+|+|+|+ |++|+|||||++++++++
T Consensus 129 IDI~E~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~p~~i~fyvDG~~~~~~~~ 208 (258)
T cd02178 129 IDILEHYGGDREEWFATRMNSNTHVFIRDPEQDYQPKDDGSWYYNPTELADDFHVYGVYWKDPDTIRFYIDGVLVRTVEN 208 (258)
T ss_pred EEhhhccCCCCCccccceeeeeEEEccCCCCCCccccccceeecCCCccccCeEEEEEEEcCCCeEEEEECCEEEEEEcC
Confidence 89 999998632 245788887643221 11 2234445567899999999999 999999999999999998
Q ss_pred CCccCCCCCCCCceee------CcEee------ecCCCCCeEEEecCcee
Q 036063 69 SESIGVPFLKNQPMRI------GGLIK------TQWTHAPFAASYRNFNA 106 (108)
Q Consensus 69 ~~~~~~~wPfd~p~~l------gG~~~------~d~~~~P~~~~~~~v~~ 106 (108)
++. ...|||++|||| || +. ..-+.+|..|+||||||
T Consensus 209 ~~~-~~~~~f~~p~~liln~avg~-w~g~~~~~~~~~~~p~~m~VDYVRv 256 (258)
T cd02178 209 SEI-TDGTGFDQPMYIIIDTETYD-WRGEPTDEELADDSKNTFYVDYVRV 256 (258)
T ss_pred ccc-CcCCcCCCCeEEEEEecccc-CCCCCCccccCCCCCCeEEEEEEEE
Confidence 654 457999999999 44 21 23345799999999998
No 5
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=99.88 E-value=2.8e-22 Score=144.26 Aligned_cols=99 Identities=32% Similarity=0.540 Sum_probs=78.9
Q ss_pred CceeeecCCCCCceEEEeeeeecCcCCceeEEEecccCCCCceeEEEEecCCeEEEEECCeeeeEecCCCccCCCCCCCC
Q 036063 1 IDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDLTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFLKNQ 80 (108)
Q Consensus 1 IDmE~lG~~~~~~~~v~tn~~~~~~~~~~~~~~~~~~~~~~fH~Y~ieW~p~~I~~yvDg~~~~~~~~~~~~~~~wPfd~ 80 (108)
||+|++|.+++ .+++++|..+.+.......++++++++||+|+|+|+|++|+|||||+++++++..+ ...|. +
T Consensus 102 IDiE~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~v~W~~~~i~~yvDg~~v~~~~~~~---~~~p~-~ 174 (212)
T cd02175 102 IDIEFLGKDTT---KVQFNYYTNGVGGHEKLIDLGFDASEGFHTYAFEWEPDSIRWYVDGELVHEATATD---PNIPD-T 174 (212)
T ss_pred EEEEEccCCCC---EeEEEEECCCCCCCceEEeCCCCcccccEEEEEEEeCCEEEEEECCEEEEEEcCcc---CCCCC-C
Confidence 89999998654 78888887665544445566678899999999999999999999999999998754 24665 9
Q ss_pred ceee------Cc---Ee--eecCCCCCeEEEecCceec
Q 036063 81 PMRI------GG---LI--KTQWTHAPFAASYRNFNAD 107 (108)
Q Consensus 81 p~~l------gG---~~--~~d~~~~P~~~~~~~v~~~ 107 (108)
||+| || .+ +++. .+|++|+||||||.
T Consensus 175 p~~i~~n~w~~~~~~~W~G~~~~-~~p~~~~vd~vr~~ 211 (212)
T cd02175 175 PGKIMMNLWPGDGVDDWLGPFDG-GTPLTAEYDWVSYT 211 (212)
T ss_pred CcEEEEEEEcCCCCCCcCCcCCC-CCCeEEEEEEEEEe
Confidence 9999 42 22 3454 78999999999985
No 6
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.87 E-value=9.7e-22 Score=142.70 Aligned_cols=103 Identities=27% Similarity=0.445 Sum_probs=80.3
Q ss_pred Cc-eeeecCCCCCceEEEeeeeecCcC----CceeEEEecc-cCCCCceeEEEEecCCeEEEEECCeeeeEecCCCccC-
Q 036063 1 ID-FEFLGNLSGDPYTLHTNVFTNGKG----DREQQFHLWF-DLTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIG- 73 (108)
Q Consensus 1 ID-mE~lG~~~~~~~~v~tn~~~~~~~----~~~~~~~~~~-~~~~~fH~Y~ieW~p~~I~~yvDg~~~~~~~~~~~~~- 73 (108)
|| ||++|..+ ..+++++|..+.. .....+.... +.+++||+|+|+|+|++|+|||||++++++++.....
T Consensus 116 IDI~E~~g~~~---~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~~~W~p~~i~~yvDG~~v~~~~~~~~~~~ 192 (235)
T cd08023 116 IDIMEYVGNEP---NTVYGTLHGGATNDGNNGSGGSYTLPTDDLSDDFHTYAVEWTPDKITFYVDGKLYFTYTNPNTDNG 192 (235)
T ss_pred ceeEecCCCCC---CeEEEEEECCCCCCCCCcccccEECCCCCcCCCcEEEEEEEECCEEEEEECCEEEEEEcccccCCc
Confidence 89 89999864 4888898876643 1233344433 6899999999999999999999999999999876432
Q ss_pred CCCCCCCceee------CcEee---ecCCCCCeEEEecCcee
Q 036063 74 VPFLKNQPMRI------GGLIK---TQWTHAPFAASYRNFNA 106 (108)
Q Consensus 74 ~~wPfd~p~~l------gG~~~---~d~~~~P~~~~~~~v~~ 106 (108)
..|||++||+| ||.+. ...+..|..|.||||||
T Consensus 193 ~~~~~~~p~~liln~~~gg~w~g~~~~~~~~p~~~~VDyVrv 234 (235)
T cd08023 193 GQWPFDQPFYLILNLAVGGNWPGPPDDDTPFPATMEVDYVRV 234 (235)
T ss_pred ccCCCCCCcEEEEEEEEcCCCCCCCCCCCCCCCEEEEEEEEE
Confidence 46899999999 55432 23467899999999998
No 7
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=99.86 E-value=2.9e-21 Score=135.08 Aligned_cols=102 Identities=39% Similarity=0.657 Sum_probs=81.3
Q ss_pred CceeeecCCCCCceEEEeeeeecCcCCc--eeEEEecccCCCCceeEEEEecCCeEEEEECCeeeeEecCCCccCCCCCC
Q 036063 1 IDFEFLGNLSGDPYTLHTNVFTNGKGDR--EQQFHLWFDLTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFLK 78 (108)
Q Consensus 1 IDmE~lG~~~~~~~~v~tn~~~~~~~~~--~~~~~~~~~~~~~fH~Y~ieW~p~~I~~yvDg~~~~~~~~~~~~~~~wPf 78 (108)
||+|++|+++. .+++++|..+.+.. ...+.+..+.+++||+|+|+|+|++|+|||||+++++++.....+..+|+
T Consensus 80 IDiE~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~y~~~W~~~~i~fyiDg~~~~~~~~~~~~~~~~P~ 156 (185)
T PF00722_consen 80 IDIEFLGNDPT---QVQTNVHWNGDGDSNWEKRVPLGFDPSTDFHTYGFEWTPDRIRFYIDGKLVRTVTNSDVPGSPYPF 156 (185)
T ss_dssp EEEEEETTSTT---EEEEEEEBTTBSCEEEEEEEETSSTTTTSEEEEEEEEETTEEEEEETTEEEEEEESSGSTTTCSSE
T ss_pred hhhhhcccccc---ceeeeeeecccCCcccceeeccccCcCCCcEEEEEEEecCeEEEEECCEEEEEEeccccccccCcc
Confidence 79999998654 79999998777654 34455567889999999999999999999999999999998764445888
Q ss_pred CCceee-CcEee-ecCCCCCeEEEecCce
Q 036063 79 NQPMRI-GGLIK-TQWTHAPFAASYRNFN 105 (108)
Q Consensus 79 d~p~~l-gG~~~-~d~~~~P~~~~~~~v~ 105 (108)
..||.| -|.+. .+|...+-.|+|||||
T Consensus 157 ~~~~~~~~~~w~~~~~~~~~~~m~vDwvr 185 (185)
T PF00722_consen 157 STPMNLALGLWPGGDWAGPAGEMEVDWVR 185 (185)
T ss_dssp EEEEEEEEEECEBTTTHSSECEEEEEEEE
T ss_pred cceeEEEEccccCCCCCCCCCEEEEEeEC
Confidence 788888 22222 2555555699999998
No 8
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=99.83 E-value=4.3e-20 Score=137.77 Aligned_cols=98 Identities=29% Similarity=0.397 Sum_probs=66.7
Q ss_pred Cc-eeeecCCC---CCce----EEEeeeeecCcCC--c--------eeEEEecccCCCCceeEEEEecCCeEEEEECCee
Q 036063 1 ID-FEFLGNLS---GDPY----TLHTNVFTNGKGD--R--------EQQFHLWFDLTADFHTYSILWNPQRIVFSVDGTP 62 (108)
Q Consensus 1 ID-mE~lG~~~---~~~~----~v~tn~~~~~~~~--~--------~~~~~~~~~~~~~fH~Y~ieW~p~~I~~yvDg~~ 62 (108)
|| ||++|.+. +++. .+|+.++..+.+. + ...+.++.+++++||+|+|+|+|++|+|||||++
T Consensus 133 IDImE~~g~~~~~~~~~~~~~~~~H~~~~~~g~g~w~~~~~~~~~~~~~~~~~~d~~~~fH~y~v~W~~~~i~~yvDg~~ 212 (269)
T cd02177 133 IDVVELQQFDWYHQDDIRDMDHNLHAIVKENGQGVWKRPKMYPPTEQLNYHRPFDPSKDFHTYGCNVNQDEIIWYVDGVE 212 (269)
T ss_pred EEEEEEecCCccccccccccceEEEEeEecCCcccccCccccccccceEEccCCCCccCcEEEEEEEeCCEEEEEECCEE
Confidence 89 99998641 1222 4555544333221 1 1124456688999999999999999999999999
Q ss_pred eeEecCCCccCCCCCCCCceee-------------------CcEeeecCCCCCeEEEecCcee
Q 036063 63 IREFKNSESIGVPFLKNQPMRI-------------------GGLIKTQWTHAPFAASYRNFNA 106 (108)
Q Consensus 63 ~~~~~~~~~~~~~wPfd~p~~l-------------------gG~~~~d~~~~P~~~~~~~v~~ 106 (108)
++++++.. | ..||+| .|. ..+.+.||.+|+||||||
T Consensus 213 ~~~~~~~~-----w--~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~fP~~m~VDyVRv 267 (269)
T cd02177 213 VGRKPNKY-----W--HRPMNVTLSLGLRKPFVKFFDNKNNAKA-REKASDFPTSMYVDYVRV 267 (269)
T ss_pred EEEEcCCc-----c--ccccEEeeccccCcchhhhhccccCCCC-CCccCcCCceEEEEEEEE
Confidence 99997642 1 134444 111 245678999999999998
No 9
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=99.82 E-value=8.1e-20 Score=135.05 Aligned_cols=102 Identities=19% Similarity=0.159 Sum_probs=69.1
Q ss_pred Cc-eeeecCCCCCceEEEeeeeecCcC----CceeEEE-ecccCCCCceeEEEEecC-----CeEEEEECCeeeeEecCC
Q 036063 1 ID-FEFLGNLSGDPYTLHTNVFTNGKG----DREQQFH-LWFDLTADFHTYSILWNP-----QRIVFSVDGTPIREFKNS 69 (108)
Q Consensus 1 ID-mE~lG~~~~~~~~v~tn~~~~~~~----~~~~~~~-~~~~~~~~fH~Y~ieW~p-----~~I~~yvDg~~~~~~~~~ 69 (108)
|| ||.+|... .++.++|..... ....... ......++||+|+|||+| ++|+|||||+++++++..
T Consensus 131 IDImE~~~~~~----~~~~t~H~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~~yvDG~~~~t~~~~ 206 (259)
T cd02182 131 LDIMENVNGLS----TGYGTLHCGVAPGGPCNEPTGIGAGTRLCDTGFHTYAVEIDRTNGDAESIRWYLDGVVYHTVTGA 206 (259)
T ss_pred eeeeeccCCCC----ceEEEEeeCCCCCCCCccccCcccCCCCCCCCcEEEEEEEccCCCCCCEEEEEECCEEEEEEehh
Confidence 89 99998643 445556543211 1111111 112345899999999997 999999999999999875
Q ss_pred Ccc-CCC--CCCCCceee------CcEee--ec---CCCCCeEEEecCcee
Q 036063 70 ESI-GVP--FLKNQPMRI------GGLIK--TQ---WTHAPFAASYRNFNA 106 (108)
Q Consensus 70 ~~~-~~~--wPfd~p~~l------gG~~~--~d---~~~~P~~~~~~~v~~ 106 (108)
... ... +|+++|||| ||.+. ++ ...+|.+|+||||||
T Consensus 207 ~~~~~~~~~~~~~~p~ylIlN~avgg~w~~~~~~~~~~~~p~~m~VDyVRV 257 (259)
T cd02182 207 RVGDETTWQALAHHPLFIILNVAVGGNWPGAPNGNTATGSGSAMEVDYVAV 257 (259)
T ss_pred hcCCCccccCcCCCCeEEEEEEEEeCCcCCCCCcccccCCCceEEEEEEEE
Confidence 332 233 467999999 55432 22 235789999999998
No 10
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=99.81 E-value=1.8e-19 Score=128.13 Aligned_cols=96 Identities=38% Similarity=0.531 Sum_probs=73.5
Q ss_pred CceeeecCCCCCceEEEeeeeecCcCC-----ceeEEEecccCCCCceeEEEEecCCeEEEEECCeeeeEecCCCccCCC
Q 036063 1 IDFEFLGNLSGDPYTLHTNVFTNGKGD-----REQQFHLWFDLTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVP 75 (108)
Q Consensus 1 IDmE~lG~~~~~~~~v~tn~~~~~~~~-----~~~~~~~~~~~~~~fH~Y~ieW~p~~I~~yvDg~~~~~~~~~~~~~~~ 75 (108)
||+|++|.++ ..+++++|...... ....+..+.++.++||+|+|+|+|++|+|||||+++++++..
T Consensus 101 IDiE~~~~~~---~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~~~W~~~~i~~yvDG~~~~~~~~~------ 171 (210)
T cd00413 101 IDIEFLGRDP---TTVQTNVHWPGYGAGATTGEEKSVHLPFDPADDFHTYRVDWTPGEITFYVDGVLVATITNQ------ 171 (210)
T ss_pred EEEEecccCC---CeEEEEEecCCCCcccccccceeecCCCCCccCeEEEEEEEeCCEEEEEECCEEEEEECCC------
Confidence 7999999763 48888888765432 122344445579999999999999999999999999999764
Q ss_pred CCCCCceee------CcEee--ecCCCCCeEEEecCcee
Q 036063 76 FLKNQPMRI------GGLIK--TQWTHAPFAASYRNFNA 106 (108)
Q Consensus 76 wPfd~p~~l------gG~~~--~d~~~~P~~~~~~~v~~ 106 (108)
.| ++||+| +|... .+...+|..|+||||||
T Consensus 172 ~p-~~p~~i~ln~~~~~~~~~~~~~~~~~~~~~Vd~vrv 209 (210)
T cd00413 172 VP-DDPMNIILNLWSDGGWWWGGPPPGAPAYMEIDWVRV 209 (210)
T ss_pred CC-CCCcEEEEEEEECCCCcccCCCCCCCcEEEEEEEEE
Confidence 34 499999 33211 24568899999999997
No 11
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.81 E-value=1.4e-19 Score=136.47 Aligned_cols=69 Identities=17% Similarity=0.163 Sum_probs=55.8
Q ss_pred CCCCceeEEEEecC-----CeEEEEECCeeeeEecCCCccC----CCCCC-CCceee------CcEee---ecCCCCCeE
Q 036063 38 LTADFHTYSILWNP-----QRIVFSVDGTPIREFKNSESIG----VPFLK-NQPMRI------GGLIK---TQWTHAPFA 98 (108)
Q Consensus 38 ~~~~fH~Y~ieW~p-----~~I~~yvDg~~~~~~~~~~~~~----~~wPf-d~p~~l------gG~~~---~d~~~~P~~ 98 (108)
..++||+|+|||+| ++|+|||||+++++++..+... ..+|+ ++|||| ||.++ .+-+.+|..
T Consensus 206 ~~~~fHtY~veW~~~~~~~~~I~wyvDg~~~~~~~~~~~~~~~~~~~~~~~~~P~ylILNlAvGg~w~g~~~~~~~~P~~ 285 (295)
T cd02180 206 NGNEFQTYGFEYRPDDEDDGYITWFVDDEPTWTIYAKALGPNGNIGWRIIPEEPMYIILNLGISSNFQDIDWDELQFPAT 285 (295)
T ss_pred cCCCcEEEEEEEecCCCCCCEEEEEECCEEEEEEehHHcCCcccccccccCCCCeEEEEEEEeccccCCCCcccCCCCCE
Confidence 47899999999999 8999999999999999865322 12344 899999 66543 245678999
Q ss_pred EEecCcee
Q 036063 99 ASYRNFNA 106 (108)
Q Consensus 99 ~~~~~v~~ 106 (108)
|+||||||
T Consensus 286 m~VDyVRV 293 (295)
T cd02180 286 MRIDYVRV 293 (295)
T ss_pred EEEEEEEE
Confidence 99999998
No 12
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.80 E-value=5.5e-19 Score=135.02 Aligned_cols=84 Identities=24% Similarity=0.257 Sum_probs=60.0
Q ss_pred Cc-eeeecCCCCC-------ceEEEeeeeecCcCC----c---eeEEEecccCCCCceeEEEEecCCeEEEEECCeeeeE
Q 036063 1 ID-FEFLGNLSGD-------PYTLHTNVFTNGKGD----R---EQQFHLWFDLTADFHTYSILWNPQRIVFSVDGTPIRE 65 (108)
Q Consensus 1 ID-mE~lG~~~~~-------~~~v~tn~~~~~~~~----~---~~~~~~~~~~~~~fH~Y~ieW~p~~I~~yvDg~~~~~ 65 (108)
|| ||.+|+.+.. ...+++++|...... + ........+++++||+|+|+|+|++|+|||||+++++
T Consensus 151 IDImE~~Gn~~~~~~~~~~g~~~v~~tlH~g~~~~~~~~~~~~~~~~~~~~~~~~~FHtY~veWtpd~I~fyVDG~~~~~ 230 (330)
T cd08024 151 IDIMESRGNRPLYDGGEAIGINSVGSTLHWGPDPGQNRYTKTTGKRSDSGGDFADDFHTYGLDWTPDHIRFYVDDRLILT 230 (330)
T ss_pred EEEEEEeCCCcccccccccCcceEEEEEEeCCCCCCCccccccceeccCCCCcccCCEEEEEEEeCCEEEEEECCEEEEE
Confidence 89 9999975422 135777887533211 1 1111223568899999999999999999999999999
Q ss_pred ecCCC-------------------ccCCCCCCCCceee
Q 036063 66 FKNSE-------------------SIGVPFLKNQPMRI 84 (108)
Q Consensus 66 ~~~~~-------------------~~~~~wPfd~p~~l 84 (108)
++... .....||||+||||
T Consensus 231 v~~~~~~~w~~g~~~~~~~~~~w~~~~~~aPFd~~fyl 268 (330)
T cd08024 231 LDVPGQGFWEFGGFSGTPIDNPWAGGGKMAPFDQEFYL 268 (330)
T ss_pred EecCCCCceeeccccccccCCcccccCcCCCCCCCEEE
Confidence 98631 11345899999999
No 13
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.71 E-value=3.1e-17 Score=125.01 Aligned_cols=49 Identities=27% Similarity=0.421 Sum_probs=42.5
Q ss_pred ccCCCCceeEEEEecCCeEEEEECCeeeeEecCCCc----------------cCCCCCCCCceee
Q 036063 36 FDLTADFHTYSILWNPQRIVFSVDGTPIREFKNSES----------------IGVPFLKNQPMRI 84 (108)
Q Consensus 36 ~~~~~~fH~Y~ieW~p~~I~~yvDg~~~~~~~~~~~----------------~~~~wPfd~p~~l 84 (108)
.+++++||+|+|+|+|++|+|||||+++++++.... ....+|||+||||
T Consensus 196 ~~~~ddFHtY~leWtpd~I~f~VDg~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~~aPFD~~Fyl 260 (321)
T cd02179 196 ELWSDDFHVYTLEWKPDGITLMVDGEEYGEIEPGEGGYSEAANNPAASRWLGGTVMAPFDKEFYL 260 (321)
T ss_pred CccccCcEEEEEEEeCCEEEEEECCEEEEEEecCcCccccccccccCccccccCccCCCCCCeEE
Confidence 468899999999999999999999999999987431 2345899999999
No 14
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=2.9e-13 Score=104.46 Aligned_cols=100 Identities=26% Similarity=0.417 Sum_probs=74.3
Q ss_pred CceeeecCCCCCceEEEeeeeecCcCCceeEEEecc-cCCCCceeEEEEecCCeEEEEECCeeeeEecCCCccCCCCCCC
Q 036063 1 IDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWF-DLTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFLKN 79 (108)
Q Consensus 1 IDmE~lG~~~~~~~~v~tn~~~~~~~~~~~~~~~~~-~~~~~fH~Y~ieW~p~~I~~yvDg~~~~~~~~~~~~~~~wPfd 79 (108)
||+|.+|++. .++.+|++.+.++.+.......... +..++||+|+++|++++|+|||||++++++...+ ..|+
T Consensus 153 ~d~e~lgg~~-~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~fhty~~~W~~~~i~Wyvdg~~~~~~~~p~----~~~~- 226 (355)
T COG2273 153 IDIEDLGGQS-TNTVIQTNHYQGGGGGTSKLVDHPNPDAIDGFHTYAFLWGEDSISWYVDGAPVATATKPD----YIPQ- 226 (355)
T ss_pred eeeeeecCCC-cccceEeeeeccCCCCceecccccCCCcccccccceeeccCCeEEEEEcceEeeEEeccc----cCcC-
Confidence 6899999654 3345999998888776655445555 8899999999999999999999999999998753 2377
Q ss_pred Cceee------CcE---eeecCCCCCeEEEecCcee
Q 036063 80 QPMRI------GGL---IKTQWTHAPFAASYRNFNA 106 (108)
Q Consensus 80 ~p~~l------gG~---~~~d~~~~P~~~~~~~v~~ 106 (108)
.|||+ ||. ....+...+-.+.++++|+
T Consensus 227 ~p~y~~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (355)
T COG2273 227 IPFYVLVNLWMGGYAGGPPGEALSAGSPLNIDYYRV 262 (355)
T ss_pred CcceeEEeecccCccCCCccccccCCcceEeeeeee
Confidence 88888 221 1234445556778887775
No 15
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=99.01 E-value=7e-10 Score=88.69 Aligned_cols=66 Identities=24% Similarity=0.414 Sum_probs=53.6
Q ss_pred CCceeEEEEecCC-----eEEEEECCeeeeEecCCCcc------CCCCCCCCceee----C---cEeeecCC--CCCeEE
Q 036063 40 ADFHTYSILWNPQ-----RIVFSVDGTPIREFKNSESI------GVPFLKNQPMRI----G---GLIKTQWT--HAPFAA 99 (108)
Q Consensus 40 ~~fH~Y~ieW~p~-----~I~~yvDg~~~~~~~~~~~~------~~~wPfd~p~~l----g---G~~~~d~~--~~P~~~ 99 (108)
..||+|++||.|+ .|+|+|||++.++++..... ....|. +|||| | +-..+||. .||.+|
T Consensus 366 ~~f~~YgfEy~Pg~~~~GYItW~vdg~~twti~a~Al~~~~~I~~R~Ip~-EPMyIIlNlgmS~sf~~vd~~~L~FP~~M 444 (504)
T PF03935_consen 366 GCFQTYGFEYKPGDGDDGYITWFVDGEPTWTINAEALGPNPNIGQRPIPE-EPMYIILNLGMSSSFGYVDWNHLCFPATM 444 (504)
T ss_pred CceEEEEEEEEeCCCCCeEEEEEECCEEEEEEEhhhcCCCCCcCccccCc-CCceeeeccccccccCccccccccccceE
Confidence 7899999999874 99999999999999987653 235786 99999 2 11136775 589999
Q ss_pred EecCcee
Q 036063 100 SYRNFNA 106 (108)
Q Consensus 100 ~~~~v~~ 106 (108)
.||||||
T Consensus 445 ~IDYVRV 451 (504)
T PF03935_consen 445 RIDYVRV 451 (504)
T ss_pred EEeEEEE
Confidence 9999998
No 16
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=97.05 E-value=0.0023 Score=41.72 Aligned_cols=64 Identities=16% Similarity=0.334 Sum_probs=46.0
Q ss_pred CCCCceeEEEEecCCeEEEEECCeeeeEecCCCccCCCCCCCCceeeCcEeeecCCCCCeEEEecCcee
Q 036063 38 LTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFLKNQPMRIGGLIKTQWTHAPFAASYRNFNA 106 (108)
Q Consensus 38 ~~~~fH~Y~ieW~p~~I~~yvDg~~~~~~~~~~~~~~~wPfd~p~~lgG~~~~d~~~~P~~~~~~~v~~ 106 (108)
..+.+|-.++.|....+++||||+++.+...... ..+.-+.+++||+. .....++...+++|||
T Consensus 83 ~~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~--~~~~~~~~~~iG~~---~~~~~~~~g~i~~~~i 146 (157)
T PF13385_consen 83 PDNKWHHLALTYDGSTVTLYVNGELVGSSTIPSN--ISLNSNGPLFIGGS---GGGSSPFNGYIDDLRI 146 (157)
T ss_dssp -TT-EEEEEEEEETTEEEEEETTEEETTCTEESS--SSTTSCCEEEESS----STT--B-EEEEEEEEE
T ss_pred CCCCEEEEEEEEECCeEEEEECCEEEEeEeccCC--cCCCCcceEEEeec---CCCCCceEEEEEEEEE
Confidence 4699999999999999999999999987765432 12333478888875 2457889999999997
No 17
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=96.39 E-value=0.019 Score=37.84 Aligned_cols=67 Identities=21% Similarity=0.344 Sum_probs=45.1
Q ss_pred CCCceeEEEEecCCeEEEEECCeeeeEecCCCccCCCCCCCCceeeCcEeee-----cCCCCCeEEEecCcee
Q 036063 39 TADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFLKNQPMRIGGLIKT-----QWTHAPFAASYRNFNA 106 (108)
Q Consensus 39 ~~~fH~Y~ieW~p~~I~~yvDg~~~~~~~~~~~~~~~wPfd~p~~lgG~~~~-----d~~~~P~~~~~~~v~~ 106 (108)
-..||...|++....++.+|||....+........ .-..+.++||||.... .....+|+--+++|++
T Consensus 79 dg~Wh~v~i~~~~~~~~l~VD~~~~~~~~~~~~~~-~~~~~~~~~iGg~~~~~~~~~~~~~~~F~Gci~~v~i 150 (151)
T cd00110 79 DGQWHSVSVERNGRSVTLSVDGERVVESGSPGGSA-LLNLDGPLYLGGLPEDLKSPGLPVSPGFVGCIRDLKV 150 (151)
T ss_pred CCCEEEEEEEECCCEEEEEECCccEEeeeCCCCce-eecCCCCeEEcCCCCchhcccccccCCCceEeeEeEe
Confidence 45899999999999999999998544443322110 1223488899886211 1235678888888876
No 18
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=96.05 E-value=0.04 Score=36.54 Aligned_cols=65 Identities=11% Similarity=0.212 Sum_probs=46.3
Q ss_pred cCCCCceeEEEEecC--CeEEEEECCeeeeEecCCCccCCCCCCCCceeeCc-EeeecCCCCCeEEEecCcee
Q 036063 37 DLTADFHTYSILWNP--QRIVFSVDGTPIREFKNSESIGVPFLKNQPMRIGG-LIKTQWTHAPFAASYRNFNA 106 (108)
Q Consensus 37 ~~~~~fH~Y~ieW~p--~~I~~yvDg~~~~~~~~~~~~~~~wPfd~p~~lgG-~~~~d~~~~P~~~~~~~v~~ 106 (108)
.+...+|-.++.++. .+|+.||||+++.+.... .++...|+.||. .........+|...||.|||
T Consensus 58 ~~~~~W~hva~v~d~~~g~~~lYvnG~~~~~~~~~-----~~~~~~~~~iG~~~~~~~~~~~~f~G~Idevri 125 (133)
T smart00560 58 DWIGVWVHLAGVYDGGAGKLSLYVNGVEVATSETQ-----PSPSSGNLPQGGRILLGGAGGENFSGRLDEVRV 125 (133)
T ss_pred CCCCCEEEEEEEEECCCCeEEEEECCEEccccccC-----CcccCCceEEeeeccCCCCCCCCceEEeeEEEE
Confidence 344889999999998 799999999998754321 344447777762 11123345678899999987
No 19
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets. It binds to lectins with high affinity helping to target the protein to sialic acid-rich environments, thereby enhancing the catalytic efficiency of the enzyme []. ; PDB: 1W0P_A 1W0O_A 1KIT_A 2W68_B.
Probab=93.91 E-value=0.11 Score=37.19 Aligned_cols=29 Identities=31% Similarity=0.681 Sum_probs=25.2
Q ss_pred CCceeEEEEecC--CeEEEEECCeeeeEecC
Q 036063 40 ADFHTYSILWNP--QRIVFSVDGTPIREFKN 68 (108)
Q Consensus 40 ~~fH~Y~ieW~p--~~I~~yvDg~~~~~~~~ 68 (108)
.+||.|.|.-.| ..-.|||||+++.++..
T Consensus 92 ~gyH~Y~i~~~p~~~tASfy~DG~lI~tw~G 122 (198)
T PF09264_consen 92 HGYHKYEIVFSPLTNTASFYFDGTLIATWSG 122 (198)
T ss_dssp CSEEEEEEEEETTTTEEEEEETTEEEEEE--
T ss_pred cceeEEEEEecCCCCceEEEECCEEEeeccC
Confidence 579999999988 89999999999998643
No 20
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=93.02 E-value=0.48 Score=33.61 Aligned_cols=64 Identities=14% Similarity=0.204 Sum_probs=42.4
Q ss_pred CCCCceeEEEEec--CCeEEEEECCeeeeEecCCCccCCCCCCCCceee-------CcEeeecCCCCCeEEEecCcee
Q 036063 38 LTADFHTYSILWN--PQRIVFSVDGTPIREFKNSESIGVPFLKNQPMRI-------GGLIKTQWTHAPFAASYRNFNA 106 (108)
Q Consensus 38 ~~~~fH~Y~ieW~--p~~I~~yvDg~~~~~~~~~~~~~~~wPfd~p~~l-------gG~~~~d~~~~P~~~~~~~v~~ 106 (108)
....+|-..+.|+ ..++++||||+++.+-.-. .+..++-..++.| ||. .+ ..-.|.-.+++|||
T Consensus 88 ~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~~~--~~~~~~~~g~l~lG~~q~~~gg~--~~-~~~~f~G~I~~v~i 160 (201)
T cd00152 88 SDGAWHHICVTWESTSGIAELWVNGKLSVRKSLK--KGYTVGPGGSIILGQEQDSYGGG--FD-ATQSFVGEISDVNM 160 (201)
T ss_pred CCCCEEEEEEEEECCCCcEEEEECCEEecccccc--CCCEECCCCeEEEeecccCCCCC--CC-CCcceEEEEceeEE
Confidence 5678999999999 5579999999988654311 1223444345555 342 22 23467888888876
No 21
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=92.99 E-value=0.25 Score=31.22 Aligned_cols=70 Identities=20% Similarity=0.328 Sum_probs=47.4
Q ss_pred CCCCceeEEEEecCCeEEEEECCeeeeEecCCCccCCCCCCCCceeeCcEeeecC----C-CCCeEEEecCceec
Q 036063 38 LTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFLKNQPMRIGGLIKTQW----T-HAPFAASYRNFNAD 107 (108)
Q Consensus 38 ~~~~fH~Y~ieW~p~~I~~yvDg~~~~~~~~~~~~~~~wPfd~p~~lgG~~~~d~----~-~~P~~~~~~~v~~~ 107 (108)
....||.-.|.=+...++..||+....+...........+.+.++||||...... . ...|..-+++|+|.
T Consensus 52 ~dg~wh~v~i~~~~~~~~l~Vd~~~~~~~~~~~~~~~~~~~~~~l~iGg~~~~~~~~~~~~~~~f~Gci~~l~vn 126 (128)
T PF02210_consen 52 NDGQWHKVSISRDGNRVTLTVDGQSVSSESLPSSSSDSLDPDGSLYIGGLPESNQPSGSVDTPGFVGCIRDLRVN 126 (128)
T ss_dssp TSSSEEEEEEEEETTEEEEEETTSEEEEEESSSTTHHCBESEEEEEESSTTTTCTCTTSSTTSB-EEEEEEEEET
T ss_pred cccceeEEEEEEeeeeEEEEecCccceEEeccccceecccCCCCEEEecccCccccccccCCCCcEEEcCeEEEC
Confidence 4578999999999999999999998887766543211233446788888521110 0 44577888888774
No 22
>smart00282 LamG Laminin G domain.
Probab=92.89 E-value=0.42 Score=31.06 Aligned_cols=67 Identities=21% Similarity=0.353 Sum_probs=42.8
Q ss_pred CCCceeEEEEecCCeEEEEECCeeeeEecCCCccCCCCCCCCceeeCcEeee-----cCCCCCeEEEecCcee
Q 036063 39 TADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFLKNQPMRIGGLIKT-----QWTHAPFAASYRNFNA 106 (108)
Q Consensus 39 ~~~fH~Y~ieW~p~~I~~yvDg~~~~~~~~~~~~~~~wPfd~p~~lgG~~~~-----d~~~~P~~~~~~~v~~ 106 (108)
-..||.-.|+-....++.+|||....+....... ...-...++||||.... .....+|.--+++|++
T Consensus 61 dg~WH~v~i~~~~~~~~l~VD~~~~~~~~~~~~~-~~l~~~~~l~iGG~p~~~~~~~~~~~~~F~GCi~~v~i 132 (135)
T smart00282 61 DGQWHRVAVERNGRRVTLSVDGENPVSGESPGGL-TILNLDGPLYLGGLPEDLKLPPLLVTPGFRGCIRNLKV 132 (135)
T ss_pred CCCEEEEEEEEeCCEEEEEECCCccccEECCCCc-eEEecCCCcEEccCCchhcccccccCCCCeeEeeEEEE
Confidence 4689999999999999999999765433322110 11112378899986210 1123457777777776
No 23
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Group of fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Lam16A belongs to the 'nonspecific' 1,3(4)-beta-glucanase subfamily, although beta-1,6 branching and beta-1,4 bonds specifically define where Lam16A hydrolyzes its substrates, like curdlan (beta-1,3-glucan), lichenin (beta-1,3-1,4-mixed linkage glucan), and laminarin (beta-1,6-branched-1,3-glucan).
Probab=92.77 E-value=0.26 Score=37.64 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=15.3
Q ss_pred CCceeEEEEecCCeEEEEE
Q 036063 40 ADFHTYSILWNPQRIVFSV 58 (108)
Q Consensus 40 ~~fH~Y~ieW~p~~I~~yv 58 (108)
..=-+|++||+++.|+...
T Consensus 179 ~GGGvyA~ew~~~~I~vWf 197 (293)
T cd02181 179 AGGGVYAMEWTSDGIKVWF 197 (293)
T ss_pred CCCcEEEEEEccCcEEEEE
Confidence 4457999999999997554
No 24
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=90.83 E-value=1.3 Score=31.01 Aligned_cols=66 Identities=12% Similarity=0.195 Sum_probs=40.7
Q ss_pred CCCCceeEEEEecCCeEEEEECCeeeeEecCCCccCCCCCCCCceeeCcEeeecCCCCCeEEEecCcee
Q 036063 38 LTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFLKNQPMRIGGLIKTQWTHAPFAASYRNFNA 106 (108)
Q Consensus 38 ~~~~fH~Y~ieW~p~~I~~yvDg~~~~~~~~~~~~~~~wPfd~p~~lgG~~~~d~~~~P~~~~~~~v~~ 106 (108)
+...||..+|.++.+++++|||++++.+..-.........- ....++|....+ ..+|+-.+..+++
T Consensus 115 ~dg~WH~lal~V~~~~v~LyvDC~~~~~~~l~~~~~~~~~~-~g~~~~g~~~~~--~~~f~G~lq~l~i 180 (184)
T smart00210 115 ADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPGQPPIDT-DGIEVRGAQAAD--RKPFQGDLQQLKI 180 (184)
T ss_pred ccCCceEEEEEEeCCEEEEEECCccccceecCCcccccccc-cceEEEeeccCC--CCcceEEeEEEEE
Confidence 56899999999999999999999999876422210000111 222232321112 3477777777765
No 25
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=90.27 E-value=0.79 Score=31.28 Aligned_cols=62 Identities=23% Similarity=0.378 Sum_probs=41.5
Q ss_pred cCCCCceeEEEEecCCeEEEEECCeeeeEecCCCccCCCCCCCCceeeCcEeeecCCCCCeEEEecCceec
Q 036063 37 DLTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFLKNQPMRIGGLIKTQWTHAPFAASYRNFNAD 107 (108)
Q Consensus 37 ~~~~~fH~Y~ieW~p~~I~~yvDg~~~~~~~~~~~~~~~wPfd~p~~lgG~~~~d~~~~P~~~~~~~v~~~ 107 (108)
....++|++.|+-..++|+.+|||+++.+++..... + ..+ .-|.+...... ..+.||+|+|+
T Consensus 124 ~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~~~~---~--~~~--~~G~Igl~~~~--~~~~frNi~Ik 185 (185)
T PF06439_consen 124 IPPGEWNTVRIVVKGNRITVWVNGKPVADFTDPSFP---Y--SNP--TKGPIGLQTHG--SEVQFRNIKIK 185 (185)
T ss_dssp --TTSEEEEEEEEETTEEEEEETTEEEEEEETTSHH---H--HHH--SSBEEEEECSS--STEEEEEEEEE
T ss_pred CCCCceEEEEEEEECCEEEEEECCEEEEEEEcCCCC---C--CCC--CceEEEEEeCC--CeEEEEEEEEC
Confidence 457899999999999999999999999999875431 1 000 11322223222 35679999874
No 26
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=89.21 E-value=2 Score=30.63 Aligned_cols=64 Identities=19% Similarity=0.298 Sum_probs=38.6
Q ss_pred CCCCceeEEEEec--CCeEEEEECCeeeeEecCCCccCCCCCCCCceee-------CcEeeecCCCCCeEEEecCcee
Q 036063 38 LTADFHTYSILWN--PQRIVFSVDGTPIREFKNSESIGVPFLKNQPMRI-------GGLIKTQWTHAPFAASYRNFNA 106 (108)
Q Consensus 38 ~~~~fH~Y~ieW~--p~~I~~yvDg~~~~~~~~~~~~~~~wPfd~p~~l-------gG~~~~d~~~~P~~~~~~~v~~ 106 (108)
....+|-..+.|+ ..++++||||+++.. .. -..+..++-...+.| ||. -+ ..-.|...++.|+|
T Consensus 88 ~~g~W~hvc~tw~~~~g~~~lyvnG~~~~~-~~-~~~g~~i~~~G~lvlGq~qd~~gg~--f~-~~~~f~G~i~~v~i 160 (206)
T smart00159 88 SDGKWHHICTTWESSSGIAELWVDGKPGVR-KG-LAKGYTVKPGGSIILGQEQDSYGGG--FD-ATQSFVGEIGDLNM 160 (206)
T ss_pred cCCceEEEEEEEECCCCcEEEEECCEEccc-cc-ccCCcEECCCCEEEEEecccCCCCC--CC-CCcceeEEEeeeEE
Confidence 4678999999998 557999999998721 11 111222332233344 332 12 23457778888875
No 27
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....
Probab=84.15 E-value=6.9 Score=25.58 Aligned_cols=68 Identities=22% Similarity=0.289 Sum_probs=42.4
Q ss_pred CCCceeEEEEecCCeEEEEECCeeeeEecCCCccCCCCCCCCceeeCcEee------ecCCCCCeEEEecCcee
Q 036063 39 TADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFLKNQPMRIGGLIK------TQWTHAPFAASYRNFNA 106 (108)
Q Consensus 39 ~~~fH~Y~ieW~p~~I~~yvDg~~~~~~~~~~~~~~~wPfd~p~~lgG~~~------~d~~~~P~~~~~~~v~~ 106 (108)
-..+|.-.+.=+...+...||+....+..........-..+.++||||.-. ......+|..-+++|.+
T Consensus 52 dg~wh~v~~~r~~~~~~L~Vd~~~~~~~~s~~~~~~~l~~~~~lyvGG~p~~~~~~~~~~~~~~f~GCi~~~~i 125 (131)
T PF00054_consen 52 DGKWHTVSVSRNGRNGSLSVDGEEVVTGESPSGATQSLDVDGPLYVGGLPSSSSRPRPLPISPGFKGCIRNLSI 125 (131)
T ss_dssp SSSEEEEEEEEETTEEEEEETTSEEEEEEECSSSSSSCEECSEEEESSSSTTTGCGSSCSCCSB-EEEEEEEEE
T ss_pred CCcceEEEEEEcCcEEEEEECCccceeeecCCccccccccccCEEEccCCchhhcccccccCCCeeEEEEEeEE
Confidence 358999999999999999999998844333221111245567899999510 01123445666665554
No 28
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=83.69 E-value=7 Score=28.67 Aligned_cols=62 Identities=26% Similarity=0.373 Sum_probs=39.2
Q ss_pred cCCCCceeEEEEecCCeEEEEECCeeeeEecCCCccCCCCCCCCceeeCcEeeecCCCCCeEEEecCcee
Q 036063 37 DLTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFLKNQPMRIGGLIKTQWTHAPFAASYRNFNA 106 (108)
Q Consensus 37 ~~~~~fH~Y~ieW~p~~I~~yvDg~~~~~~~~~~~~~~~wPfd~p~~lgG~~~~d~~~~P~~~~~~~v~~ 106 (108)
++. .|+.-.|......|+|.|||.++++++-.... ..| ..=+|.+.-- .=.|..|.|++++|
T Consensus 157 d~~-~~Yr~~i~K~~~~v~f~In~L~vf~w~Dd~~~--~gP----vl~~G~IGfR-qMapl~A~Yrnl~V 218 (218)
T PF09224_consen 157 DAR-GPYRMEIVKDGRTVRFSINGLPVFSWTDDGST--YGP----VLRGGRIGFR-QMAPLVARYRNLEV 218 (218)
T ss_dssp G---S-EEEEEEEETTEEEEEETTEEEEEEE--SSS--SSS-------SBEEEEE-EETT-EEEEEEEEE
T ss_pred ccC-CCEEEEEEEcCCEEEEEECCEEEEEEEcCCCc--cCC----cccCcEeeee-ccchhhhhhccccC
Confidence 444 56666999999999999999999999765421 123 2336764322 24788999998876
No 29
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=78.73 E-value=2.9 Score=29.72 Aligned_cols=65 Identities=17% Similarity=0.408 Sum_probs=41.3
Q ss_pred CCCCceeEEE--EecC---CeEEEEECCeeeeEecCCCccCCCCCCCCceee-CcEeeecCCCCCeE----EEecCcee
Q 036063 38 LTADFHTYSI--LWNP---QRIVFSVDGTPIREFKNSESIGVPFLKNQPMRI-GGLIKTQWTHAPFA----ASYRNFNA 106 (108)
Q Consensus 38 ~~~~fH~Y~i--eW~p---~~I~~yvDg~~~~~~~~~~~~~~~wPfd~p~~l-gG~~~~d~~~~P~~----~~~~~v~~ 106 (108)
....+|.+.| .|.+ ..|+.++||+++........ ... .+.+|+ =|.....|...|.. .+||+||+
T Consensus 150 ~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~g~~~--~~~--~~~~y~K~GiYr~~~~~~~~~~~~~vy~D~v~~ 224 (224)
T PF14099_consen 150 ERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYKGPTG--YND--DRGPYFKFGIYRSGWKNDPNESDTQVYYDNVRI 224 (224)
T ss_dssp -TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEEEEEC--ECC--SSEEEEEEEEEEHCCHHHSC--SS-EEEEEEE-
T ss_pred CCCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEeCCce--eCC--CCcceeEEEEECCCCcCCCcccccEEEeccccC
Confidence 3489998876 7885 88999999999998887322 112 356666 33333344433333 89999885
No 30
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=65.19 E-value=31 Score=24.76 Aligned_cols=68 Identities=15% Similarity=0.228 Sum_probs=39.6
Q ss_pred CCCceeEEEEec--CCeEEEEECCeeeeEecCCCccC-CCCCCCCceeeCcEeeecCCCCCeEEEecCcee
Q 036063 39 TADFHTYSILWN--PQRIVFSVDGTPIREFKNSESIG-VPFLKNQPMRIGGLIKTQWTHAPFAASYRNFNA 106 (108)
Q Consensus 39 ~~~fH~Y~ieW~--p~~I~~yvDg~~~~~~~~~~~~~-~~wPfd~p~~lgG~~~~d~~~~P~~~~~~~v~~ 106 (108)
...||+=++.=+ ....++|+||.++.++......- ..-|-=.-+.|||.--..-..-||.-.|++|+|
T Consensus 102 ~~~~~tva~~ad~~~~~ykly~NG~~v~~~~~~~~~Fis~i~~~n~~~iG~t~R~g~~~y~f~G~I~~l~i 172 (190)
T PF02973_consen 102 NVTFNTVAFVADSKNKGYKLYVNGELVSTLSSKSGNFISDIPGLNSVQIGGTNRAGSNAYPFNGTIDNLKI 172 (190)
T ss_dssp EES-EEEEEEEETTTTEEEEEETTCEEEEEEECTSS-GGGSTT--EEEESSEEETTEEES--EEEEEEEEE
T ss_pred CceEEEEEEEEecCCCeEEEEeCCeeEEEeccccccHhhcCcCCceEEEcceEeCCCceecccceEEEEEE
Confidence 456888887776 78999999998888775543110 111211334456642122246789999999886
No 31
>PF12248 Methyltransf_FA: Farnesoic acid 0-methyl transferase; InterPro: IPR022041 This domain, found in farnesoic acid O-methyl transferase, is approximately 110 amino acids in length. Farnesoic acid O-methyl transferase (FAMeT) is the enzyme that catalyses the formation of methyl farnesoate (MF) from farnesoic acid (FA) in the biosynthetic pathway of juvenile hormone (JH) [].
Probab=61.20 E-value=30 Score=21.81 Aligned_cols=31 Identities=23% Similarity=0.518 Sum_probs=26.9
Q ss_pred CCCCceeEEEEecCCeEEEEECCe--eeeEecC
Q 036063 38 LTADFHTYSILWNPQRIVFSVDGT--PIREFKN 68 (108)
Q Consensus 38 ~~~~fH~Y~ieW~p~~I~~yvDg~--~~~~~~~ 68 (108)
...+|..|.|.|..+.|++..||. ++.+++-
T Consensus 50 s~~e~~~fwI~~~~G~I~vg~~g~~~pfl~~~D 82 (102)
T PF12248_consen 50 SPSEFRMFWISWRDGTIRVGRGGEDEPFLEWTD 82 (102)
T ss_pred CCCccEEEEEEECCCEEEEEECCCccEEEEEEC
Confidence 478999999999999999999987 6667653
No 32
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=56.85 E-value=9.8 Score=23.24 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=13.7
Q ss_pred CeEEEEECCeeeeEecC
Q 036063 52 QRIVFSVDGTPIREFKN 68 (108)
Q Consensus 52 ~~I~~yvDg~~~~~~~~ 68 (108)
..+.|||||+.+.+...
T Consensus 43 ~~~~W~vdg~~~g~~~~ 59 (89)
T PF06832_consen 43 GPVYWFVDGEPLGTTQP 59 (89)
T ss_pred CcEEEEECCEEcccCCC
Confidence 48999999999965544
No 33
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=54.48 E-value=29 Score=22.34 Aligned_cols=31 Identities=13% Similarity=0.126 Sum_probs=26.0
Q ss_pred CCCCceeEEEEecCCeEEEEECCeeeeEecCC
Q 036063 38 LTADFHTYSILWNPQRIVFSVDGTPIREFKNS 69 (108)
Q Consensus 38 ~~~~fH~Y~ieW~p~~I~~yvDg~~~~~~~~~ 69 (108)
+.++-|++.+. ..+..+++|||+++......
T Consensus 57 ~~~G~y~f~~~-~~d~~~l~idg~~vid~~~~ 87 (145)
T PF07691_consen 57 PETGTYTFSLT-SDDGARLWIDGKLVIDNWGN 87 (145)
T ss_dssp SSSEEEEEEEE-ESSEEEEEETTEEEEECSCT
T ss_pred ccCceEEEEEE-ecccEEEEECCEEEEcCCcc
Confidence 46778999998 88899999999999876643
No 34
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits. Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....
Probab=42.49 E-value=66 Score=22.76 Aligned_cols=29 Identities=21% Similarity=0.459 Sum_probs=22.4
Q ss_pred cCCCCceeEEEEecC--CeEEEEECCeeeeE
Q 036063 37 DLTADFHTYSILWNP--QRIVFSVDGTPIRE 65 (108)
Q Consensus 37 ~~~~~fH~Y~ieW~p--~~I~~yvDg~~~~~ 65 (108)
.....+|-+-+.|+. .+.++|+||+...+
T Consensus 81 ~~~~~Whh~C~tW~s~~G~~~ly~dG~~~~~ 111 (195)
T PF00354_consen 81 IRDGQWHHICVTWDSSTGRWQLYVDGVRLSS 111 (195)
T ss_dssp S-TSS-EEEEEEEETTTTEEEEEETTEEEEE
T ss_pred cCCCCcEEEEEEEecCCcEEEEEECCEeccc
Confidence 345889999999996 88999999995543
No 35
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=41.45 E-value=32 Score=29.69 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=33.6
Q ss_pred ecccCCCCceeEEEEecCCeEEEEECCeeeeEecCCCccCCCCCCCCceee
Q 036063 34 LWFDLTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFLKNQPMRI 84 (108)
Q Consensus 34 ~~~~~~~~fH~Y~ieW~p~~I~~yvDg~~~~~~~~~~~~~~~wPfd~p~~l 84 (108)
+..-.-++||-|.+.-+--.++.|+||+-+.-.-. ...||- +|-.+
T Consensus 436 l~qVCD~EWH~Y~ln~efp~VtlyvDG~Sfep~~i----~ddwpl-Hpsk~ 481 (952)
T KOG1834|consen 436 LPQVCDNEWHHYVLNVEFPDVTLYVDGKSFEPPLI----TDDWPL-HPSKI 481 (952)
T ss_pred chhhhhhhhheeEEeecCceEEEEEcCcccCCcee----ccCCcc-Ccccc
Confidence 34445689999999999777999999987653222 246888 66666
No 36
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=37.48 E-value=31 Score=21.04 Aligned_cols=16 Identities=6% Similarity=0.179 Sum_probs=12.9
Q ss_pred CCeEEEEECCeeeeEe
Q 036063 51 PQRIVFSVDGTPIREF 66 (108)
Q Consensus 51 p~~I~~yvDg~~~~~~ 66 (108)
+-.|+||-||+++...
T Consensus 14 ~a~i~W~k~~~~l~~~ 29 (80)
T cd05885 14 AATLRWYRDRKELKGV 29 (80)
T ss_pred CCeEEEEECCEECCCC
Confidence 4579999999998643
No 37
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=35.29 E-value=34 Score=20.79 Aligned_cols=17 Identities=18% Similarity=0.493 Sum_probs=13.8
Q ss_pred CeEEEEECCeeeeEecC
Q 036063 52 QRIVFSVDGTPIREFKN 68 (108)
Q Consensus 52 ~~I~~yvDg~~~~~~~~ 68 (108)
..|+++|||+.+.-...
T Consensus 2 ~~v~i~idG~~v~~~~G 18 (82)
T PF13510_consen 2 KMVTITIDGKPVEVPPG 18 (82)
T ss_dssp EEEEEEETTEEEEEEET
T ss_pred CEEEEEECCEEEEEcCC
Confidence 57999999999876544
No 38
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=34.20 E-value=80 Score=20.25 Aligned_cols=28 Identities=18% Similarity=0.148 Sum_probs=22.4
Q ss_pred CCCCceeEEEEecCCeEEEEECCeeeeEe
Q 036063 38 LTADFHTYSILWNPQRIVFSVDGTPIREF 66 (108)
Q Consensus 38 ~~~~fH~Y~ieW~p~~I~~yvDg~~~~~~ 66 (108)
..++-|++.+. ..+..+.+|||+++..-
T Consensus 55 ~~~G~y~f~~~-~~~~~~l~Idg~~vid~ 82 (136)
T smart00758 55 PEDGEYTFSIT-SDDGARLWIDGKLVIDN 82 (136)
T ss_pred CCCccEEEEEE-cCCcEEEEECCcEEEcC
Confidence 35667899885 78889999999998753
No 39
>PF08787 Alginate_lyase2: Alginate lyase; InterPro: IPR014895 Alginate lyases are enzymes that degrade the linear polysaccharide alignate. They cleave the glycosidic linkage of alignate through a beta-elimination reaction. This region forms an all beta fold, which is different to the all alpha fold of IPR008397 from INTERPRO. ; PDB: 1VAV_B 1UAI_A 1J1T_A 2Z42_A 2ZAC_A 2ZAB_A 2ZAA_A 2ZA9_A 2CWS_A.
Probab=31.85 E-value=1.4e+02 Score=21.70 Aligned_cols=67 Identities=7% Similarity=0.178 Sum_probs=43.0
Q ss_pred CCceeEEEEecCCeEEEEECCeeeeEecCCCccCCCCCCCCceee-CcEeeecCCCC----CeEEEecCceec
Q 036063 40 ADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFLKNQPMRI-GGLIKTQWTHA----PFAASYRNFNAD 107 (108)
Q Consensus 40 ~~fH~Y~ieW~p~~I~~yvDg~~~~~~~~~~~~~~~wPfd~p~~l-gG~~~~d~~~~----P~~~~~~~v~~~ 107 (108)
.+.-.|.|+=+.+.|..+|+|......+........|-. +.+|+ +|...=+.... -.++.|..++|.
T Consensus 164 G~~F~y~I~v~~~~l~V~ing~~~~~~~~~~~~~~~w~~-~~~YFKaGvY~Q~~~~~~~~~~~~v~f~~L~v~ 235 (236)
T PF08787_consen 164 GEWFSYEIEVSGGTLTVTINGEGKTTVTFTVDLDSSWDS-QSFYFKAGVYNQSNDGSPSGDYAEVRFYSLTVS 235 (236)
T ss_dssp T-EEEEEEEEETTEEEEEETTEEEEEEHHHH---CGGGG-SCEEEEEEEEES-BTTTTTCCEEEEEEEEEEEE
T ss_pred CCEEEEEEEEECCEEEEEEECCcceEEEeeeccccccCC-ceeEEEEEEEecCCCCCCCccEEEEEEEEEEEE
Confidence 367789999999999999999988776431111123655 67899 77653332333 256777777663
No 40
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=25.32 E-value=2.2e+02 Score=24.55 Aligned_cols=58 Identities=21% Similarity=0.294 Sum_probs=36.9
Q ss_pred CCCceeEEEEecCCeEEEEECCeeeeEecCCCccCCCCCCCCceeeCcEeeecCCCCCeEEEecCceecC
Q 036063 39 TADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFLKNQPMRIGGLIKTQWTHAPFAASYRNFNADA 108 (108)
Q Consensus 39 ~~~fH~Y~ieW~p~~I~~yvDg~~~~~~~~~~~~~~~wPfd~p~~lgG~~~~d~~~~P~~~~~~~v~~~~ 108 (108)
+..||+-+|-=..+.|.=.+||+.+.+.... .+|- .|...+- +..=..+.||+++|+|
T Consensus 610 ~~~WhtltL~~~g~~~ta~lng~~l~~~~~~-----~~p~------~G~aaIG-T~~~~~~QFDNf~V~a 667 (669)
T PF02057_consen 610 AGKWHTLTLTISGSTATAMLNGTVLWTDVDS-----SYPK------NGWAAIG-TSSFETAQFDNFSVEA 667 (669)
T ss_dssp TT-EEEEEEEEETTEEEEEETTEEEEEEEE-------SS---------EEEEE-ESSS--EEEEEEEEEE
T ss_pred CCeEEEEEEEEECCEEEEEECCEEeEEeccc-----CCCC------CceEEEE-cCCCceeEeeeeEEEe
Confidence 5789999999999999999999999875432 2332 1211111 1111257899999986
No 41
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=25.28 E-value=70 Score=18.53 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=14.6
Q ss_pred EecCCeEEEEECCeeeeE
Q 036063 48 LWNPQRIVFSVDGTPIRE 65 (108)
Q Consensus 48 eW~p~~I~~yvDg~~~~~ 65 (108)
.+.+-...|+|||..+++
T Consensus 42 ~~~~vpfdF~i~~~~lr~ 59 (65)
T PF08154_consen 42 EEEPVPFDFLINGEELRT 59 (65)
T ss_pred CCCCCcEEEEECCEEeec
Confidence 457888899999998774
No 42
>PF13018 ESPR: Extended Signal Peptide of Type V secretion system
Probab=24.00 E-value=80 Score=14.98 Aligned_cols=16 Identities=31% Similarity=0.762 Sum_probs=11.4
Q ss_pred eeEEEEecCCeEEEEE
Q 036063 43 HTYSILWNPQRIVFSV 58 (108)
Q Consensus 43 H~Y~ieW~p~~I~~yv 58 (108)
++|.+.|+...=.|-+
T Consensus 3 kiyr~iwn~~~~~~vv 18 (24)
T PF13018_consen 3 KIYRLIWNKARGTWVV 18 (24)
T ss_pred ccEEEEEECCCCeEEE
Confidence 5788889877655543
No 43
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=23.92 E-value=89 Score=21.78 Aligned_cols=35 Identities=23% Similarity=0.501 Sum_probs=24.4
Q ss_pred ccCCCCceeEEEEecCCeEEEEECCeeee---EecCCCccC
Q 036063 36 FDLTADFHTYSILWNPQRIVFSVDGTPIR---EFKNSESIG 73 (108)
Q Consensus 36 ~~~~~~fH~Y~ieW~p~~I~~yvDg~~~~---~~~~~~~~~ 73 (108)
....++||+|- ..+++.|+|+|..+. +++-.++.+
T Consensus 15 ~~~gd~f~I~d---~dgE~af~VeGs~f~i~dtlti~Da~G 52 (159)
T COG4894 15 FSFGDAFHIYD---RDGEEAFKVEGSFFSIGDTLTITDASG 52 (159)
T ss_pred hhcccceEEEC---CCCcEEEEEeeeEEeeCceEEEEecCC
Confidence 34578899886 678899999998765 444444433
No 44
>PF06236 MelC1: Tyrosinase co-factor MelC1; InterPro: IPR010928 This family consists of several tyrosinase co-factor MELC1 proteins from a number of Streptomyces species. The melanin operon (melC) of Streptomyces antibioticus contains two genes, melC1 and melC2 (apotyrosinase). It is thought that MelC1 forms a transient binary complex with the downstream apotyrosinase MelC2 to facilitate the incorporation of copper ion and the secretion of tyrosinase indicating that MelC1 is a chaperone for the apotyrosinase MelC2 [].; GO: 0005507 copper ion binding, 0042438 melanin biosynthetic process; PDB: 1WX4_B 2ZWD_B 2ZMZ_B 1WX2_B 1WX5_D 3AWX_B 3AWS_B 2ZMY_B 3AX0_B 2ZWG_B ....
Probab=23.00 E-value=86 Score=21.11 Aligned_cols=20 Identities=15% Similarity=0.486 Sum_probs=14.4
Q ss_pred CeEEEEECCeeeeEecCCCc
Q 036063 52 QRIVFSVDGTPIREFKNSES 71 (108)
Q Consensus 52 ~~I~~yvDg~~~~~~~~~~~ 71 (108)
.....+|||++++-+.+++.
T Consensus 69 ~~~~V~IDGr~LhvMr~ADG 88 (125)
T PF06236_consen 69 GGYEVTIDGRPLHVMRRADG 88 (125)
T ss_dssp -SEEEEETTEEE-EEE-TTS
T ss_pred CceEEEECCeEeeeEEcCCC
Confidence 34578999999999999874
No 45
>PF10646 Germane: Sporulation and spore germination; InterPro: IPR019606 The GerMN domain is a region of approximately 100 residues that is found, duplicated, in the Bacillus GerM protein and is implicated in both sporulation and spore germination. It is also found in lipoprotein LpqB. The domain is present in a number of different bacterial species both alone and in association with other domains such as Gmad1 and Gmad2. It is predicted to have a novel alpha-beta fold.
Probab=22.83 E-value=68 Score=20.03 Aligned_cols=16 Identities=25% Similarity=0.640 Sum_probs=12.9
Q ss_pred CCeEEEEECCeeeeEe
Q 036063 51 PQRIVFSVDGTPIREF 66 (108)
Q Consensus 51 p~~I~~yvDg~~~~~~ 66 (108)
=++++++|||+.+-++
T Consensus 101 v~~V~i~vdG~~~~~l 116 (117)
T PF10646_consen 101 VKKVQILVDGKPLESL 116 (117)
T ss_pred ccEEEEEECCEEcCcc
Confidence 5789999999987643
No 46
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=21.68 E-value=91 Score=18.37 Aligned_cols=14 Identities=7% Similarity=0.197 Sum_probs=11.2
Q ss_pred cCCeEEEEECCeee
Q 036063 50 NPQRIVFSVDGTPI 63 (108)
Q Consensus 50 ~p~~I~~yvDg~~~ 63 (108)
.+..|+||-||+++
T Consensus 29 ~~~~~~W~kng~~l 42 (78)
T cd05752 29 EQNSTQWYHNGKLL 42 (78)
T ss_pred CCccEEEEECCEEe
Confidence 35578999999887
No 47
>PF11720 Inhibitor_I78: Peptidase inhibitor I78 family; InterPro: IPR021719 This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.
Probab=21.17 E-value=69 Score=18.30 Aligned_cols=16 Identities=25% Similarity=0.557 Sum_probs=13.7
Q ss_pred EEEecCCeEEEEECCe
Q 036063 46 SILWNPQRIVFSVDGT 61 (108)
Q Consensus 46 ~ieW~p~~I~~yvDg~ 61 (108)
++|..|++|.+.+|+.
T Consensus 36 TmDyr~dRLnv~~D~~ 51 (60)
T PF11720_consen 36 TMDYRPDRLNVEVDDD 51 (60)
T ss_pred cccCCCCcEEEEECCC
Confidence 4677999999999985
No 48
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=21.00 E-value=84 Score=17.63 Aligned_cols=14 Identities=36% Similarity=0.842 Sum_probs=10.9
Q ss_pred eEEEEECCeeeeEe
Q 036063 53 RIVFSVDGTPIREF 66 (108)
Q Consensus 53 ~I~~yvDg~~~~~~ 66 (108)
.|+|+.||+++...
T Consensus 17 ~i~W~~~g~~~~~~ 30 (76)
T cd04978 17 TITWRLNGVPIEEL 30 (76)
T ss_pred EEEEEECCEECCCC
Confidence 58999999877643
No 49
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=20.87 E-value=1.8e+02 Score=17.07 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=17.6
Q ss_pred eEEEE-ECCeeeeEecCCCccCCCCCCCCceee
Q 036063 53 RIVFS-VDGTPIREFKNSESIGVPFLKNQPMRI 84 (108)
Q Consensus 53 ~I~~y-vDg~~~~~~~~~~~~~~~wPfd~p~~l 84 (108)
=|+.. .||+.+++-.-.......++...|+.|
T Consensus 10 Wv~V~d~dG~~~~~~~l~~G~~~~~~~~~~~~i 42 (77)
T PF13464_consen 10 WVEVTDADGKVLFSGTLKAGETKTFEGKEPFRI 42 (77)
T ss_pred EEEEEeCCCcEeeeeeeCCCcEEEEeCCCCEEE
Confidence 35556 778766654332222234566677777
No 50
>PF08292 RNA_pol_Rbc25: RNA polymerase III subunit Rpc25; InterPro: IPR013238 Rpc25 is a strongly conserved subunit of RNA polymerase III and has homology to Rpa43 in RNA polymerase I, Rpb7 in RNA polymerase II and the archaeal RpoE subunit. Rpc25 is required for transcription initiation and is not essential for the elongating properties of RNA polymerase III [].; PDB: 2CKZ_D 3AYH_B.
Probab=20.61 E-value=96 Score=20.52 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=10.0
Q ss_pred CCeEEEEECCeeeeEecC
Q 036063 51 PQRIVFSVDGTPIREFKN 68 (108)
Q Consensus 51 p~~I~~yvDg~~~~~~~~ 68 (108)
.+.|||.|..+.+.....
T Consensus 64 ge~IRFRV~~~~f~d~~p 81 (122)
T PF08292_consen 64 GEEIRFRVESEIFPDVPP 81 (122)
T ss_dssp T-EEEEEEEEEEE-----
T ss_pred CCEEEEEEeEEEEecCCC
Confidence 577888888888854443
No 51
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=20.53 E-value=78 Score=18.81 Aligned_cols=13 Identities=15% Similarity=0.427 Sum_probs=10.6
Q ss_pred eEEEEECCeeeeE
Q 036063 53 RIVFSVDGTPIRE 65 (108)
Q Consensus 53 ~I~~yvDg~~~~~ 65 (108)
.|+||-||+++..
T Consensus 14 ~v~W~k~g~~i~~ 26 (81)
T cd04971 14 TLTWYHNGAVLNE 26 (81)
T ss_pred cEEEEECCEECcC
Confidence 5899999988753
No 52
>PF12197 lci: Bacillus cereus group antimicrobial protein; InterPro: IPR020976 This entry represents antimicrobial peptides from bacteria of approximately 40 amino acids in length.; PDB: 2B9K_A.
Probab=20.34 E-value=49 Score=18.32 Aligned_cols=19 Identities=11% Similarity=0.288 Sum_probs=12.0
Q ss_pred EEEEecCCeEEEEECCeee
Q 036063 45 YSILWNPQRIVFSVDGTPI 63 (108)
Q Consensus 45 Y~ieW~p~~I~~yvDg~~~ 63 (108)
|+=-|+.+.|+||+-|...
T Consensus 12 FAN~F~~~GitWYfKg~~~ 30 (45)
T PF12197_consen 12 FANSFSDDGITWYFKGKHT 30 (45)
T ss_dssp ---EEEETTEEEEEEEEEE
T ss_pred eEEEEEcCCcEEEEeeeEE
Confidence 4445566789999988643
No 53
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=20.28 E-value=87 Score=17.87 Aligned_cols=13 Identities=38% Similarity=0.866 Sum_probs=10.5
Q ss_pred eEEEEECCeeeeE
Q 036063 53 RIVFSVDGTPIRE 65 (108)
Q Consensus 53 ~I~~yvDg~~~~~ 65 (108)
.|+|+.||+++..
T Consensus 17 ~i~W~k~g~~i~~ 29 (76)
T cd05867 17 NITWSINGAPIEG 29 (76)
T ss_pred eEEEEECCEECCC
Confidence 7899999987753
No 54
>PF06289 FlbD: Flagellar protein (FlbD); InterPro: IPR009384 This family consists of several bacterial FlbD flagellar proteins. The exact function of this family is unknown [].
Probab=20.19 E-value=1.7e+02 Score=17.03 Aligned_cols=27 Identities=11% Similarity=-0.012 Sum_probs=22.4
Q ss_pred CCceeEEEEecCCeEEEEECCeeeeEe
Q 036063 40 ADFHTYSILWNPQRIVFSVDGTPIREF 66 (108)
Q Consensus 40 ~~fH~Y~ieW~p~~I~~yvDg~~~~~~ 66 (108)
+.-|+-.||-+||.+.-.++|+.+-..
T Consensus 15 N~d~IE~ie~~PDTvItL~~G~k~vV~ 41 (60)
T PF06289_consen 15 NPDLIETIEETPDTVITLTNGKKYVVK 41 (60)
T ss_pred ChHHEEEEEEcCCeEEEEeCCCEEEEE
Confidence 345899999999999999999877643
No 55
>PF07230 Peptidase_S80: Bacteriophage T4-like capsid assembly protein (Gp20); InterPro: IPR010823 This family of proteins is essential for capsid assembly in the T4-like bacteriophages []. Gp20 forms a unique 12 subunit portal vertex through which DNA enters during packaging and exits during infection. The Gp20 vertex acts as an initiator for the assembly of the major capsid protein and the scaffolding proteins into a prolate icosahedron of precise dimensions. The regulation of portal protein gene expression is an important regulator of prohead assembly in bacteriophage T4 [].
Probab=20.11 E-value=35 Score=28.12 Aligned_cols=12 Identities=25% Similarity=0.135 Sum_probs=10.1
Q ss_pred EEEECCeeeeEe
Q 036063 55 VFSVDGTPIREF 66 (108)
Q Consensus 55 ~~yvDg~~~~~~ 66 (108)
+|||||+.++..
T Consensus 142 rWYVDgRi~fhk 153 (501)
T PF07230_consen 142 RWYVDGRIYFHK 153 (501)
T ss_pred HHhhcceeEEEE
Confidence 799999998744
Done!