BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036064
(1044 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose
Translocation Intermediate
Length = 802
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 742 GWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGSAPINLTDRLHQVLRWATGSVEIF 801
G+ ++TED T +H+RGW+S+Y R G P + Q RWATG +++
Sbjct: 334 GFAGETITEDAETALEIHSRGWKSLYI--DRAMIAGLQPETFASFIQQRGRWATGMMQML 391
Query: 802 FSRNNAILGTRRLKFLQRMAYLNTGIYPFTSIFLVTYCFLPAMCHFSG 849
+N L R L QR+ YLN+ + F + + + P + F G
Sbjct: 392 LLKNP--LFRRGLGIAQRLCYLNSMSFWFFPLVRMMFLVAPLIYLFFG 437
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 48/125 (38%), Gaps = 18/125 (14%)
Query: 505 YVSREKRKGYDHQKKAGAMNGMVRASAILSNGPFILNLDCDHYIYNSLAIREGMCFMMDR 564
Y +RE+ + KAG M+ + G ++ D DH R F+ D
Sbjct: 216 YSTRER----NEHAKAGNMSAALERL----KGELVVVFDADHVPSRDFLARTVGYFVED- 266
Query: 565 GGDRICYIQFPQRFEGIDP-------SDRYANHNTVFFDGNMRALDGIQGPFYVGTGCMF 617
+ +Q P F DP DR N +F+ R LD G F+ G+ +
Sbjct: 267 --PDLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSAAVL 324
Query: 618 RRYAL 622
RR AL
Sbjct: 325 RRRAL 329
>pdb|3TT7|A Chain A, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|B Chain B, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|C Chain C, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|D Chain D, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|E Chain E, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|F Chain F, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|G Chain G, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
Length = 197
Score = 30.4 bits (67), Expect = 5.1, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 303 ANTILS---ILAAEYPIEKLSAYISDDGGAILTFEAMAEAVRF 342
AN+I+S LAAE P +++S YI+ GG+I A+ + ++F
Sbjct: 41 ANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIYDTMQF 83
>pdb|3TT6|A Chain A, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|B Chain B, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|C Chain C, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|D Chain D, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|E Chain E, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|F Chain F, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|G Chain G, Structure Of Clpp From Bacillus Subtilis In Compressed
State
Length = 196
Score = 30.4 bits (67), Expect = 5.1, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 303 ANTILS---ILAAEYPIEKLSAYISDDGGAILTFEAMAEAVRF 342
AN+I+S LAAE P +++S YI+ GG+I A+ + ++F
Sbjct: 40 ANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIYDTMQF 82
>pdb|3KTI|A Chain A, Structure Of Clpp In Complex With Adep1
pdb|3KTI|B Chain B, Structure Of Clpp In Complex With Adep1
pdb|3KTI|C Chain C, Structure Of Clpp In Complex With Adep1
pdb|3KTI|D Chain D, Structure Of Clpp In Complex With Adep1
pdb|3KTI|E Chain E, Structure Of Clpp In Complex With Adep1
pdb|3KTI|F Chain F, Structure Of Clpp In Complex With Adep1
pdb|3KTI|G Chain G, Structure Of Clpp In Complex With Adep1
pdb|3KTJ|A Chain A, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|B Chain B, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|C Chain C, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|D Chain D, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|E Chain E, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|F Chain F, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|G Chain G, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTK|A Chain A, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|B Chain B, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|C Chain C, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|D Chain D, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|E Chain E, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|F Chain F, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|G Chain G, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|H Chain H, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|I Chain I, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|J Chain J, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|K Chain K, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|L Chain L, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|M Chain M, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|N Chain N, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
Length = 199
Score = 30.4 bits (67), Expect = 5.1, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 303 ANTILS---ILAAEYPIEKLSAYISDDGGAILTFEAMAEAVRF 342
AN+I+S LAAE P +++S YI+ GG+I A+ + ++F
Sbjct: 40 ANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIYDTMQF 82
>pdb|3KTG|A Chain A, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|B Chain B, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|C Chain C, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|D Chain D, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|E Chain E, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|F Chain F, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|G Chain G, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTH|A Chain A, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|B Chain B, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|C Chain C, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|D Chain D, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|E Chain E, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|F Chain F, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|G Chain G, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
Length = 199
Score = 30.4 bits (67), Expect = 5.1, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 303 ANTILS---ILAAEYPIEKLSAYISDDGGAILTFEAMAEAVRF 342
AN+I+S LAAE P +++S YI+ GG+I A+ + ++F
Sbjct: 40 ANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIYDTMQF 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,390,252
Number of Sequences: 62578
Number of extensions: 1336520
Number of successful extensions: 2169
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 2165
Number of HSP's gapped (non-prelim): 31
length of query: 1044
length of database: 14,973,337
effective HSP length: 109
effective length of query: 935
effective length of database: 8,152,335
effective search space: 7622433225
effective search space used: 7622433225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)