BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036067
(295 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UMZ|B Chain B, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UN1|A Chain A, Xyloglucan Endotransglycosylase Native Structure.
pdb|1UN1|B Chain B, Xyloglucan Endotransglycosylase Native Structure
Length = 278
Score = 251 bits (641), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 127/236 (53%), Positives = 162/236 (68%), Gaps = 6/236 (2%)
Query: 62 KSGGSGFQSKNEYQFGKIDMQIKLVPGNSAGTVTAYYLSSKGEKWDEIDFEFLGNVSGEP 121
K G+GFQSK Y FG MQ+KLVPG+SAGTVTA+YLSS+ + DEIDFEFLGN +G+P
Sbjct: 45 KYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQP 104
Query: 122 YTLHTNVICQGQGAREQQFHLWFDPTVDFHTYSILWSPERIIFYVDDIPIREFEKMENL- 180
Y L TNV G+G REQ+ +LWFDPT +FH YS+LW+ I+F VDD+PIR F+ ++L
Sbjct: 105 YILQTNVFTGGKGDREQRIYLWFDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLG 164
Query: 181 -PFPENQAMRIYSTLWNADDWATQGGRVKTDWSYAPFTASYRNFNADACVWSNGASSCNS 239
FP NQ M+IYS+LWNADDWAT+GG KTDWS APF ASYR+F+ D C S A C +
Sbjct: 165 VKFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYRSFHIDGCEASVEAKFCAT 224
Query: 240 NDPSTGWSSKPWVWQRLDDGKRGQMKWVQDNYMIYDYCKDNKRFSQGLAPECTRAK 295
+ W K +Q LD + ++ WV+ Y IY+YC D R+ + PEC R +
Sbjct: 225 QG-ARWWDQKE--FQDLDAFQYRRLSWVRQKYTIYNYCTDRSRYP-SMPPECKRDR 276
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
pdb|2VH9|B Chain B, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
Length = 290
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 101/232 (43%), Positives = 139/232 (59%), Gaps = 14/232 (6%)
Query: 63 SGGSGFQSKNEYQFGKIDMQIKLVPGNSAGTVTAYYLSSKGE---KWDEIDFEFLGNVSG 119
+ GSGF+S N Y+ G IKL G +AG +T++YLS+ + K DEID EFLG + G
Sbjct: 70 TSGSGFKSINRYRSGYFGANIKLQSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPG 129
Query: 120 EPYTLHTNVICQGQGAREQQFHLWFDPTVDFHTYSILWSPERIIFYVDDIPIREFEKMEN 179
+PYTL TNV +G G RE + HLWFDPT D+H Y+I W+P IIF+VDD+PIR + + +
Sbjct: 130 KPYTLQTNVFIEGSGDREMRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSD 189
Query: 180 LPFPENQAMRIYSTLWNADDWATQGGRVKTDWSYAPFTASYRNFNADACVWSNGASSCNS 239
FP + + +Y ++W+A WAT+ G+ K D+ Y PF Y +F +C ASSCN
Sbjct: 190 ATFPL-RPLWVYGSVWDASSWATENGKYKADYRYQPFVGKYEDFKLGSCT-VEAASSCNP 247
Query: 240 NDPSTGWSSKPWVWQRLDDGKRGQMKWVQDNYMIYDYCKDNKRFSQGLAPEC 291
S + +L + M+WVQ NYM+Y+YC D R L PEC
Sbjct: 248 ASVSP--------YGQLSQQQVAAMEWVQKNYMVYNYCDDPTR-DHTLTPEC 290
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
pdb|2UWB|B Chain B, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
Length = 267
Score = 202 bits (515), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 101/232 (43%), Positives = 139/232 (59%), Gaps = 14/232 (6%)
Query: 63 SGGSGFQSKNEYQFGKIDMQIKLVPGNSAGTVTAYYLSSKGE---KWDEIDFEFLGNVSG 119
+ GSGF+S N Y+ G IKL G +AG +T++YLS+ + K DEID EFLG + G
Sbjct: 47 TSGSGFKSINRYRSGYFGANIKLQSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPG 106
Query: 120 EPYTLHTNVICQGQGAREQQFHLWFDPTVDFHTYSILWSPERIIFYVDDIPIREFEKMEN 179
+PYTL TNV +G G RE + HLWFDPT D+H Y+I W+P IIF+VDD+PIR + + +
Sbjct: 107 KPYTLQTNVFIEGSGDREMRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSD 166
Query: 180 LPFPENQAMRIYSTLWNADDWATQGGRVKTDWSYAPFTASYRNFNADACVWSNGASSCNS 239
FP + + +Y ++W+A WAT+ G+ K D+ Y PF Y +F +C ASSCN
Sbjct: 167 ATFPL-RPLWVYGSVWDASSWATENGKYKADYRYQPFVGKYEDFKLGSCT-VEAASSCNP 224
Query: 240 NDPSTGWSSKPWVWQRLDDGKRGQMKWVQDNYMIYDYCKDNKRFSQGLAPEC 291
S + +L + M+WVQ NYM+Y+YC D R L PEC
Sbjct: 225 ASVSP--------YGQLSQQQVAAMEWVQKNYMVYNYCDDPTR-DHTLTPEC 267
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
pdb|2UWC|B Chain B, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
Length = 271
Score = 198 bits (503), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 139/237 (58%), Gaps = 19/237 (8%)
Query: 63 SGGSGFQSKNEYQFGKIDMQIKLVPGNSAGTVTAYYLSSKGE---KWDEIDFEFLGNVSG 119
+ GSGF+S N Y+ G IKL G +AG +T++YLS+ + K DEID EFLG + G
Sbjct: 46 TSGSGFKSINRYRSGYFGANIKLQSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPG 105
Query: 120 EPYTLHTNVICQGQG-----AREQQFHLWFDPTVDFHTYSILWSPERIIFYVDDIPIREF 174
+PYTL TNV +G G RE + HLWFDPT D+H Y+I W+P IIF+VDD+PIR +
Sbjct: 106 KPYTLQTNVFIEGSGDYNIIGRELRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRY 165
Query: 175 EKMENLPFPENQAMRIYSTLWNADDWATQGGRVKTDWSYAPFTASYRNFNADACVWSNGA 234
+ + FP + M +Y ++W+A WAT+ G+ K D+ Y PF Y +F +C A
Sbjct: 166 PRKSDATFPL-RPMWVYGSVWDASSWATENGKYKADYRYQPFVGKYEDFKLGSCT-VEAA 223
Query: 235 SSCNSNDPSTGWSSKPWVWQRLDDGKRGQMKWVQDNYMIYDYCKDNKRFSQGLAPEC 291
SSCN S + +L + M+WVQ NYM+Y+YC D R L PEC
Sbjct: 224 SSCNPASVSP--------YGQLSQQQVAAMEWVQKNYMVYNYCDDPTR-DHTLTPEC 271
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|B Chain B, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|C Chain C, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
Length = 274
Score = 197 bits (501), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 101/237 (42%), Positives = 139/237 (58%), Gaps = 19/237 (8%)
Query: 63 SGGSGFQSKNEYQFGKIDMQIKLVPGNSAGTVTAYYLSSKGE---KWDEIDFEFLGNVSG 119
+ GSGF+S N Y+ G IKL G +AG +T++YLS+ + K DEID EFLG + G
Sbjct: 49 TSGSGFKSINRYRSGYFGANIKLQSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPG 108
Query: 120 EPYTLHTNVICQGQG-----AREQQFHLWFDPTVDFHTYSILWSPERIIFYVDDIPIREF 174
+PYTL TNV +G G RE + HLWFDPT D+H Y+I W+P IIF+VDD+PIR +
Sbjct: 109 KPYTLQTNVFIEGSGDYNIIGREMRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRY 168
Query: 175 EKMENLPFPENQAMRIYSTLWNADDWATQGGRVKTDWSYAPFTASYRNFNADACVWSNGA 234
+ + FP + + +Y ++W+A WAT+ G+ K D+ Y PF Y +F +C A
Sbjct: 169 PRKSDATFPL-RPLWVYGSVWDASSWATENGKYKADYRYQPFVGKYEDFKLGSCT-VEAA 226
Query: 235 SSCNSNDPSTGWSSKPWVWQRLDDGKRGQMKWVQDNYMIYDYCKDNKRFSQGLAPEC 291
SSCN S + +L + M+WVQ NYM+Y+YC D R L PEC
Sbjct: 227 SSCNPASVSP--------YGQLSQQQVAAMEWVQKNYMVYNYCDDPTR-DHTLTPEC 274
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 16/139 (11%)
Query: 68 FQSKNEYQFGKIDMQIKLVPGNSAGTVTAYYL---SSKGEKWDEIDFEFLGNVSGEPYTL 124
++S N Y +G ++ +K P + G V++++ + G +WDEID EFLG + +
Sbjct: 6 YRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKV 60
Query: 125 HTNVICQGQGAREQQFHLWFDPTVDFHTYSILWSPERIIFYVDDIPIREFEKMENLPFPE 184
N G G E+ L FD + FHTY+ W P I +YVD + + N+P
Sbjct: 61 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG--VLKHTATANIPSTP 118
Query: 185 NQAMRIYSTLWNA---DDW 200
+ M LWN DDW
Sbjct: 119 GKIMM---NLWNGTGVDDW 134
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
pdb|3D6E|B Chain B, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
Length = 201
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 68/142 (47%), Gaps = 16/142 (11%)
Query: 65 GSGFQSKNEYQFGKIDMQIKLVPGNSAGTVTAYYLSS---KGEKWDEIDFEFLGNVSGEP 121
G G QS Y +G ++ +K P + G V+A+Y S+ G WDEID EFLG + +
Sbjct: 48 GGGNQSVQTYGYGLYEVNMK--PAKNVGIVSAFYTSTGPTDGTPWDEIDIEFLGKDTTK- 104
Query: 122 YTLHTNVICQGQGAREQQFHLWFDPTVDFHTYSILWSPERIIFYVDDIPIREFEKMENLP 181
+ N G G E+ +L FD +HTY+ W P I +YVD + +
Sbjct: 105 --VQFNYYTNGVGNHEKIVNLGFDAANSYHTYAFDWQPNSIKWYVDG----QLKHTATTQ 158
Query: 182 FPENQAMRIYSTLW---NADDW 200
P+ +IY +LW D+W
Sbjct: 159 IPQTPG-KIYMSLWAGAGVDEW 179
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 214
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 16/139 (11%)
Query: 68 FQSKNEYQFGKIDMQIKLVPGNSAGTVTAYYL---SSKGEKWDEIDFEFLGNVSGEPYTL 124
++S N Y +G ++ +K P + G V++++ + G +WDEID EFLG + +
Sbjct: 6 YRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKV 60
Query: 125 HTNVICQGQGAREQQFHLWFDPTVDFHTYSILWSPERIIFYVDDIPIREFEKMENLPFPE 184
N G G E+ L FD + FHTY+ W P I +YVD + + N+P
Sbjct: 61 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG--VLKHTATANIP--- 115
Query: 185 NQAMRIYSTLWNA---DDW 200
+ +I LWN DDW
Sbjct: 116 STPGKIMMNLWNGTGVDDW 134
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus
(1-3,1-4)- Beta-Glucanase
pdb|1GLH|A Chain A, Cation Binding To A Bacillus (1,3-1,4)-Beta-Glucanase.
Geometry, Affinity And Effect On Protein Stability
pdb|2AYH|A Chain A, Crystal And Molecular Structure At 1.6 Angstroms
Resolution Of The Hybrid Bacillus
Endo-1,3-1,4-Beta-D-Glucan 4- Glucanohydrolase H(A16-M)
Length = 214
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 16/139 (11%)
Query: 68 FQSKNEYQFGKIDMQIKLVPGNSAGTVTAYYL---SSKGEKWDEIDFEFLGNVSGEPYTL 124
++S N Y +G ++ +K P + G V++++ + G +WDEID EFLG + +
Sbjct: 64 YRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKV 118
Query: 125 HTNVICQGQGAREQQFHLWFDPTVDFHTYSILWSPERIIFYVDDIPIREFEKMENLPFPE 184
N G G E+ L FD + FHTY+ W P I +YVD + + N+P
Sbjct: 119 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG--VLKHTATANIP--- 173
Query: 185 NQAMRIYSTLWNA---DDW 200
+ +I LWN DDW
Sbjct: 174 STPGKIMMNLWNGTGVDDW 192
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
pdb|1MAC|B Chain B, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
Length = 212
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 16/139 (11%)
Query: 68 FQSKNEYQFGKIDMQIKLVPGNSAGTVTAYYL---SSKGEKWDEIDFEFLGNVSGEPYTL 124
++S N Y +G ++ +K P + G V++++ + G +WDEID EFLG + +
Sbjct: 62 YRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKV 116
Query: 125 HTNVICQGQGAREQQFHLWFDPTVDFHTYSILWSPERIIFYVDDIPIREFEKMENLPFPE 184
N G G E+ L FD + FHTY+ W P I +YVD + + N+P
Sbjct: 117 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG--VLKHTATANIP--- 171
Query: 185 NQAMRIYSTLWNA---DDW 200
+ +I LWN DDW
Sbjct: 172 STPGKIMMNLWNGTGVDDW 190
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 208
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 16/139 (11%)
Query: 68 FQSKNEYQFGKIDMQIKLVPGNSAGTVTAYYL---SSKGEKWDEIDFEFLGNVSGEPYTL 124
++S N Y +G ++ +K P + G V++++ + G +WDEID EFLG + +
Sbjct: 6 YRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKV 60
Query: 125 HTNVICQGQGAREQQFHLWFDPTVDFHTYSILWSPERIIFYVDDIPIREFEKMENLPFPE 184
N G G E+ L FD + FHTY+ W P I +YVD + + N+P
Sbjct: 61 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG--VLKHTATANIP--- 115
Query: 185 NQAMRIYSTLWNA---DDW 200
+ +I LWN DDW
Sbjct: 116 STPGKIMMNLWNGTGVDDW 134
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|B Chain B, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|C Chain C, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|D Chain D, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
Length = 214
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 16/139 (11%)
Query: 68 FQSKNEYQFGKIDMQIKLVPGNSAGTVTAYYL---SSKGEKWDEIDFEFLGNVSGEPYTL 124
++S N Y +G ++ +K P + G V++++ + G +WD+ID +FLG + +
Sbjct: 64 YRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDQIDIQFLGK---DTTKV 118
Query: 125 HTNVICQGQGAREQQFHLWFDPTVDFHTYSILWSPERIIFYVDDIPIREFEKMENLPFPE 184
N G G E+ L FD + FHTY+ W P I +YVD + + N+P
Sbjct: 119 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG--VLKHTATANIP--- 173
Query: 185 NQAMRIYSTLWNA---DDW 200
+ +I LWN DDW
Sbjct: 174 STPGKIMMNLWNGTGVDDW 192
>pdb|3AXD|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXD|B Chain B, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXE|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN COMPLEX WITH
CELLOTETRAOSE (CELLOBIOSE DENSITY WAS Observed)
Length = 249
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 16/146 (10%)
Query: 65 GSGFQSKNEYQFGKIDMQIKLVPGNSAGTVTAYYLSSKGEK------WDEIDFEFLGNVS 118
G+ + EYQ+GK + ++K+ ++GTV++ +L G + W E+D E LG
Sbjct: 9 GAELYTLEEYQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGK-- 64
Query: 119 GEPYTLHTNVICQGQGARE-QQFHLWFDPTVD--FHTYSILWSPERIIFYVDDIPIREFE 175
P + +N+I GA++ + H P D FHTY + W+P + + VD +R+ E
Sbjct: 65 -SPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKTE 123
Query: 176 KMENLPFPENQAMRIYSTLWNADDWA 201
+ Q +R LW+++ A
Sbjct: 124 GGQVSNLTGTQGLRF--NLWSSESAA 147
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 17/128 (13%)
Query: 65 GSGFQSKNEYQFGKIDMQIKLVPGNSAGTVTAYYLSS---KGEKWDEIDFEFLGNVSGEP 121
G+ +++++++ +G Q+++ P + G V++++ + G WDEID EFLG + +
Sbjct: 81 GAEYRTRDKFGYGL--YQVRMKPAKNPGIVSSFFTYTGPVHGTPWDEIDIEFLGKDTTK- 137
Query: 122 YTLHTNVICQGQGAREQQFHLWFDPTVDFHTYSILWSPERIIFYV---------DDIPIR 172
+ N G E + L FD + DFH Y+ W P I + V DDIP+
Sbjct: 138 --VQFNYYTNSAGNHEYIYDLRFDASEDFHIYAFNWQPNYIAWLVDGEEVYRAYDDIPVH 195
Query: 173 EFEKMENL 180
+ M N+
Sbjct: 196 PGKIMLNI 203
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
pdb|1AJK|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
Length = 214
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 14/117 (11%)
Query: 90 SAGTVTAYYL---SSKGEKWDEIDFEFLGNVSGEPYTLHTNVICQGQGAREQQFHLWFDP 146
+ G V++++ + G +WDEID EFLG + + N G G E+ L FD
Sbjct: 1 NTGIVSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKVQFNYYTNGVGGHEKVISLGFDA 57
Query: 147 TVDFHTYSILWSPERIIFYVDDIPIREFEKMENLPFPENQAMRIYSTLWNA---DDW 200
+ FHTY+ W P I +YVD + + N+P + +I LWN DDW
Sbjct: 58 SKGFHTYAFDWQPGYIKWYVDG--VLKHTATANIP---STPGKIMMNLWNGTGVDDW 109
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase
Length = 214
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 16/138 (11%)
Query: 69 QSKNEYQFGKIDMQIKLVPGNSAGTVTAYYL---SSKGEKWDEIDFEFLGNVSGEPYTLH 125
+S Y +G ++ +K P + G V++++ + G WDEID EFLG + + +
Sbjct: 65 RSVQTYGYGLYEVNMK--PAKNVGIVSSFFTYTGPTDGTPWDEIDIEFLGKDTTK---VQ 119
Query: 126 TNVICQGQGAREQQFHLWFDPTVDFHTYSILWSPERIIFYVDDIPIREFEKMENLPFPEN 185
N G G E+ +L FD +HTY+ W P I +YVD + + P+
Sbjct: 120 FNYYTNGVGNHEKIVNLGFDAANSYHTYAFDWQPNSIKWYVDG----QLKHTATTQIPQT 175
Query: 186 QAMRIYSTLWNA---DDW 200
+I LWN D+W
Sbjct: 176 PG-KIMMNLWNGAGVDEW 192
>pdb|2R49|A Chain A, Mutational And Structural Studies Of E85i Reveal The
Flexible Loops Of Fibrobacter Succinogenes
1,3-1,4-beta-d- Glucanaseglucanase
Length = 241
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 16/146 (10%)
Query: 65 GSGFQSKNEYQFGKIDMQIKLVPGNSAGTVTAYYLSSKGEK------WDEIDFEFLGNVS 118
G+ + E Q+GK + ++K+ ++GTV++ +L G + W E+D E LG
Sbjct: 7 GAELYTLEEVQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGK-- 62
Query: 119 GEPYTLHTNVICQGQGAREQQF-HLWFDPTVD--FHTYSILWSPERIIFYVDDIPIREFE 175
P + +N+I GA++ H P D FHTY + W+P + + VD +R+ E
Sbjct: 63 -NPGSFQSNIITGKAGAQKTSIKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKTE 121
Query: 176 KMENLPFPENQAMRIYSTLWNADDWA 201
+ Q +R LW+++ A
Sbjct: 122 GGQVSNLTGTQGLRF--NLWSSESAA 145
>pdb|3H0O|A Chain A, The Importance Of Ch-Pi Stacking Interactions Between
Carbohydrate And Aromatic Residues In Truncated
Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase
Length = 240
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 16/146 (10%)
Query: 65 GSGFQSKNEYQFGKIDMQIKLVPGNSAGTVTAYYLSSKGEK------WDEIDFEFLGNVS 118
G+ + E Q+GK + ++K+ ++GTV++ +L G + W E+D E LG
Sbjct: 6 GAELYTLEEVQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGK-- 61
Query: 119 GEPYTLHTNVICQGQGARE-QQFHLWFDPTVD--FHTYSILWSPERIIFYVDDIPIREFE 175
P + +N+I GA++ + H P D FHTY + W+P + + VD +R+ E
Sbjct: 62 -NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKTE 120
Query: 176 KMENLPFPENQAMRIYSTLWNADDWA 201
+ Q +R LW+++ A
Sbjct: 121 GGQVSNLTGTQGLRF--NLWSSESAA 144
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From
Bacillus Subtilis (Strain 168)
Length = 238
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 16/138 (11%)
Query: 69 QSKNEYQFGKIDMQIKLVPGNSAGTVTAYYL---SSKGEKWDEIDFEFLGNVSGEPYTLH 125
+S Y +G ++++K P + G V++++ + G WDEID EFLG + +
Sbjct: 89 RSVQTYGYGLYEVRMK--PAKNTGIVSSFFTYTGPTDGTPWDEIDIEFLGK---DTTKVQ 143
Query: 126 TNVICQGQGAREQQFHLWFDPTVDFHTYSILWSPERIIFYVDDIPIREFEKMENLPFPEN 185
N G G E+ L FD +HTY+ W P I +YVD + + P
Sbjct: 144 FNYYTNGAGNHEKIVDLGFDAANAYHTYAFDWQPNSIKWYVDG----QLKHTATNQIPTT 199
Query: 186 QAMRIYSTLWNA---DDW 200
+I LWN D+W
Sbjct: 200 PG-KIMMNLWNGTGVDEW 216
>pdb|3HR9|A Chain A, The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-
Glucanase F40i Mutant
Length = 241
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 16/146 (10%)
Query: 65 GSGFQSKNEYQFGKIDMQIKLVPGNSAGTVTAYYLSSKGEK------WDEIDFEFLGNVS 118
G+ + E Q+GK + ++K+ ++GTV++ L G + W E+D E LG
Sbjct: 7 GAELYTLEEVQYGKFEARMKMAA--ASGTVSSMILYQNGSEIADGRPWVEVDIEVLGK-- 62
Query: 119 GEPYTLHTNVICQGQGARE-QQFHLWFDPTVD--FHTYSILWSPERIIFYVDDIPIREFE 175
P + +N+I GA++ + H P D FHTY + W+P + + VD +R+ E
Sbjct: 63 -NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKTE 121
Query: 176 KMENLPFPENQAMRIYSTLWNADDWA 201
+ Q +R LW+++ A
Sbjct: 122 GGQVSNLTGTQGLRF--NLWSSESAA 145
>pdb|1MVE|A Chain A, Crystal Structure Of A Natural Circularly-Permutated
Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From
Fibrobacter Succinogenes
Length = 243
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 16/146 (10%)
Query: 65 GSGFQSKNEYQFGKIDMQIKLVPGNSAGTVTAYYLSSKGEK------WDEIDFEFLGNVS 118
G+ + E Q+GK + + K ++GTV++ +L G + W E+D E LG
Sbjct: 9 GAELYTLEEVQYGKFEARXKXAA--ASGTVSSXFLYQNGSEIADGRPWVEVDIEVLGK-- 64
Query: 119 GEPYTLHTNVICQGQGARE-QQFHLWFDPTVD--FHTYSILWSPERIIFYVDDIPIREFE 175
P + +N+I GA++ + H P D FHTY + W+P + + VD +R+ E
Sbjct: 65 -NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKTE 123
Query: 176 KMENLPFPENQAMRIYSTLWNADDWA 201
+ Q +R LW+++ A
Sbjct: 124 GGQVSNLTGTQGLRF--NLWSSESAA 147
>pdb|1ZM1|A Chain A, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
pdb|1ZM1|B Chain B, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
Length = 241
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 16/146 (10%)
Query: 65 GSGFQSKNEYQFGKIDMQIKLVPGNSAGTVTAYYLSSKGEK------WDEIDFEFLGNVS 118
G+ + E Q+GK + + K ++GTV++ +L G + W E+D E LG
Sbjct: 6 GAELYTLEEVQYGKFEARXKXAA--ASGTVSSXFLYQNGSEIADGRPWVEVDIEVLGK-- 61
Query: 119 GEPYTLHTNVICQGQGARE-QQFHLWFDPTVD--FHTYSILWSPERIIFYVDDIPIREFE 175
P + +N+I GA++ + H P D FHTY + W+P + + VD +R+ E
Sbjct: 62 -NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKTE 120
Query: 176 KMENLPFPENQAMRIYSTLWNADDWA 201
+ Q +R LW+++ A
Sbjct: 121 GGQVSNLTGTQGLRF--NLWSSESAA 144
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
pdb|1AJO|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
Length = 214
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 134 GAREQQFHLWFDPTVDFHTYSILWSPERIIFYVDDIPIREFEKMENLPFPENQAMRIYST 193
G E+ L FD + FHTY+ W P I +YVD + + N+P + +I
Sbjct: 2 GGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG--VLKHTATANIP---STPGKIMMN 56
Query: 194 LWNA---DDW 200
LWN DDW
Sbjct: 57 LWNGTGVDDW 66
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 68 FQSKNEYQFGKIDMQIKLVPGNSAGTVTAYYL---SSKGEKWDEIDFEFLG 115
++S N Y +G ++ +K P + G V++++ + G +WDEID EFLG
Sbjct: 152 YRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLG 200
>pdb|3ATG|A Chain A, Endo-1,3-Beta-Glucanase From Cellulosimicrobium Cellulans
Length = 256
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 69 QSKNEYQFGKIDMQIKLVPGNSAGTVTAYYL---SSKGEKWDEI-DFEFLGNVSGEPYTL 124
Q K + Q+G+I+ +I++ G G A+++ S G W + + + NV EP+ +
Sbjct: 76 QGKYQPQYGRIEARIQIPRGQ--GIWPAFWMLGGSFPGTPWPSSGEIDIMENVGFEPHRV 133
Query: 125 HTNVICQGQGAREQQFHLWFDPTV-----DFHTYSILWSPERIIFYVD 167
H V G ++ P FHT+++ W P I ++VD
Sbjct: 134 HGTVHGPGYSGGSGITGMYQHPQGWSFADTFHTFAVDWKPGEITWFVD 181
>pdb|1DYP|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose 4 Galactohydrolase
Length = 271
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 140 FHLWFDPTVDFHTYSILWSPERIIFYVDDIPIRE-----FEKMENLPFPENQAMRIYSTL 194
+HL FDP DFHTY + + ++I +YVD + E + + NL +Q +R T
Sbjct: 182 YHLPFDPRNDFHTYGVNVTKDKITWYVDGEIVGEKDNLYWHRQXNLTL--SQGLRAPHTQ 239
Query: 195 WNAD 198
W +
Sbjct: 240 WKCN 243
>pdb|2VY0|A Chain A, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
pdb|2VY0|B Chain B, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
Length = 264
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 108 EIDF-EFLGNVSGEPYTLHTNVICQGQGAREQQFHLWFDP------TVDFHTYSILWSPE 160
EID EFLG+ EP T+H V G + + P T DFH + I+W P+
Sbjct: 137 EIDIMEFLGH---EPRTIHGTVHGPGYSGSKGITRAYTLPEGVPDFTEDFHVFGIVWYPD 193
Query: 161 RIIFYVDDIPIREFEK 176
+I +YVD E K
Sbjct: 194 KIKWYVDGTFYHEVTK 209
>pdb|2HYK|A Chain A, The Crystal Structure Of An Endo-Beta-1,3-Glucanase From
Alkaliphilic Nocardiopsis Sp.Strain F96
Length = 245
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 11/110 (10%)
Query: 69 QSKNEYQFGKIDMQIKLVPGNSAGTVTAYYLSS---KGEKW-DEIDFEFLGNVSGEPYTL 124
Q+K + Q+G+++ I++ G G A+++ W D + + + N+ EP+ +
Sbjct: 80 QNKVQPQYGRVEASIQIPRGQ--GIWPAFWMLGADFPNTPWPDSGEIDIMENIGREPHLV 137
Query: 125 HTNVICQGQGAREQQFHLWFDP-----TVDFHTYSILWSPERIIFYVDDI 169
H ++ G E + P FHT+++ W P I + VD +
Sbjct: 138 HGSLHGPGYFGGEPLTGSYMHPQGWSFADTFHTFAVDWRPGSITWSVDGV 187
>pdb|3ILN|A Chain A, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
pdb|3ILN|B Chain B, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
Length = 251
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 149 DFHTYSILWSPERIIFYVDDIPIREFEKMENLPFPE 184
DFH Y+I W+PE I ++VDD F E L PE
Sbjct: 166 DFHVYAIEWTPEEIRWFVDDSLYYRFPN-ERLTNPE 200
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 200 WATQGGRVKTDWSYAPFTASYRNFNADACVWSNG 233
+ T GG++ W+ AP SYR F + + VWS G
Sbjct: 205 YTTSGGKIPIRWT-APEAISYRKFTSASDVWSFG 237
>pdb|1UPS|A Chain A, Glcnac[alpha]1-4gal Releasing Endo-[beta]-Galactosidase
From Clostridium Perfringens
pdb|1UPS|B Chain B, Glcnac[alpha]1-4gal Releasing Endo-[beta]-Galactosidase
From Clostridium Perfringens
Length = 420
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 145 DPTVDFHTYSILWSPERIIFYVDD 168
DPT ++H Y++ W+P + FY D+
Sbjct: 209 DPTSEYHIYAMEWTPTALKFYYDN 232
>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Vuf 12058
Length = 285
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 200 WATQGGRVKTDWSYAPFTASYRNFNADACVWSNG 233
+ T+GG++ W+ AP +YR F + + VWS G
Sbjct: 168 YTTRGGKIPIRWT-APEAIAYRKFTSASDVWSYG 200
>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain
pdb|2Y6O|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Dasatinib
Length = 291
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 200 WATQGGRVKTDWSYAPFTASYRNFNADACVWSNG 233
+ T+GG++ W+ AP +YR F + + VWS G
Sbjct: 174 YTTRGGKIPIRWT-APEAIAYRKFTSASDVWSYG 206
>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a)
Length = 306
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 200 WATQGGRVKTDWSYAPFTASYRNFNADACVWSNG 233
+ T+GG++ W+ AP +YR F + + VWS G
Sbjct: 189 YTTRGGKIPIRWT-APEAIAYRKFTSASDVWSYG 221
>pdb|4DFS|A Chain A, Structure Of The Catalytic Domain Of An
Endo-1,3-Beta-Glucanase (Laminarinase) From Thermotoga
Petrophila Rku-1
pdb|4DFS|B Chain B, Structure Of The Catalytic Domain Of An
Endo-1,3-Beta-Glucanase (Laminarinase) From Thermotoga
Petrophila Rku-1
Length = 267
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Query: 69 QSKNEYQFGKIDMQIKLVPGNSAGTVTAYYLSSKGE-KW---DEIDF-EFLGNVSGEPYT 123
+ K E ++GKI+++ KL G ++ GE W EID E LG+ + Y
Sbjct: 97 EGKFEIKYGKIEIRAKLPKGKGIWPALWMLGNNIGEVGWPTCGEIDIMEMLGHDTRTVYG 156
Query: 124 LHTNVICQGQGAREQQFHL---WFDPTVDFHTYSILWSPERIIFYVD 167
G + +HL D + DFH +SI W + + +YVD
Sbjct: 157 TAHGPGYSGGASIGVAYHLPEGVPDFSEDFHIFSIEWDEDEVEWYVD 203
>pdb|3AZX|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZX|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZZ|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3B00|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B01|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
Length = 272
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Query: 69 QSKNEYQFGKIDMQIKLVPGNSAGTVTAYYLSSKGE-KW---DEIDF-EFLGNVSGEPYT 123
+ K E ++GKI+++ KL G ++ GE W EID E LG+ + Y
Sbjct: 89 EGKFEIKYGKIEIRAKLPKGKGIWPALWMLGNNIGEVGWPTCGEIDIMEMLGHDTRTVYG 148
Query: 124 LHTNVICQGQGAREQQFHL---WFDPTVDFHTYSILWSPERIIFYVD 167
G + +HL D + DFH +SI W + + +YVD
Sbjct: 149 TAHGPGYSGGASIGVAYHLPEGVPDFSEDFHIFSIEWDEDEVEWYVD 195
>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7)
pdb|3DKO|A Chain A, Complex Between The Kinase Domain Of Human Ephrin Type-A
Receptor 7 (Epha7) And Inhibitor Alw-Ii-49-7
Length = 318
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 200 WATQGGRVKTDWSYAPFTASYRNFNADACVWSNG 233
+ T GG++ W+ AP YR F + + VWS G
Sbjct: 203 YTTTGGKIPVRWT-APEAIQYRKFTSASDVWSYG 235
>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5)
Length = 295
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 200 WATQGGRVKTDWSYAPFTASYRNFNADACVWSNG 233
+ T+GG++ W+ AP ++R F + + VWS G
Sbjct: 182 YTTRGGKIPIRWT-APEAIAFRKFTSASDVWSYG 214
>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnye[ptyr]iw
pdb|3FY2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnyefiw
Length = 371
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 200 WATQGGRVKTDWSYAPFTASYRNFNADACVWSNG 233
+ T+GG++ W+ +P +YR F + + VWS G
Sbjct: 203 YTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYG 235
>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane
Region
pdb|2QO2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Apo Structure
pdb|2QO9|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Phosphorylated, Amp-pnp Bound
Length = 373
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 200 WATQGGRVKTDWSYAPFTASYRNFNADACVWSNG 233
+ T+GG++ W+ +P +YR F + + VWS G
Sbjct: 205 YTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYG 237
>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Amp-Pnp Bound
pdb|2QOQ|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Base, Amp-Pnp
Bound Structure
Length = 373
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 200 WATQGGRVKTDWSYAPFTASYRNFNADACVWSNG 233
+ T+GG++ W+ +P +YR F + + VWS G
Sbjct: 205 YTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYG 237
>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant
Length = 373
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 200 WATQGGRVKTDWSYAPFTASYRNFNADACVWSNG 233
+ T+GG++ W+ +P +YR F + + VWS G
Sbjct: 205 YTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYG 237
>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant
Length = 373
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 200 WATQGGRVKTDWSYAPFTASYRNFNADACVWSNG 233
+ T+GG++ W+ +P +YR F + + VWS G
Sbjct: 205 YTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYG 237
>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f
Double Mutant
Length = 373
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 200 WATQGGRVKTDWSYAPFTASYRNFNADACVWSNG 233
+ T+GG++ W+ +P +YR F + + VWS G
Sbjct: 205 YTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYG 237
>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:s768a Triple Mutant
Length = 373
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 200 WATQGGRVKTDWSYAPFTASYRNFNADACVWSNG 233
+ T+GG++ W+ +P +YR F + + VWS G
Sbjct: 205 YTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYG 237
>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742f Triple Mutant
Length = 373
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 200 WATQGGRVKTDWSYAPFTASYRNFNADACVWSNG 233
+ T+GG++ W+ +P +YR F + + VWS G
Sbjct: 205 YTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYG 237
>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742a Triple Mutant
Length = 373
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 200 WATQGGRVKTDWSYAPFTASYRNFNADACVWSNG 233
+ T+GG++ W+ +P +YR F + + VWS G
Sbjct: 205 YTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYG 237
>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596:y602:s768g Triple Mutant
Length = 373
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 200 WATQGGRVKTDWSYAPFTASYRNFNADACVWSNG 233
+ T+GG++ W+ +P +YR F + + VWS G
Sbjct: 205 YTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYG 237
>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor
Awl-Ii- 38.3
pdb|4G2F|A Chain A, Human Epha3 Kinase Domain In Complex With Compound 7
pdb|4GK2|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 66
pdb|4GK3|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 87
pdb|4GK4|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 90
Length = 361
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 200 WATQGGRVKTDWSYAPFTASYRNFNADACVWSNG 233
+ T+GG++ W+ +P +YR F + + VWS G
Sbjct: 193 YTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYG 225
>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound
Structure
Length = 344
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 200 WATQGGRVKTDWSYAPFTASYRNFNADACVWSNG 233
+ T+GG++ W+ +P +YR F + + VWS G
Sbjct: 176 YTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYG 208
>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure
Length = 344
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 200 WATQGGRVKTDWSYAPFTASYRNFNADACVWSNG 233
+ T+GG++ W+ +P +YR F + + VWS G
Sbjct: 176 YTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYG 208
>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 200 WATQGGRVKTDWSYAPFTASYRNFNADACVWSNGA 234
+ T GG++ W+ AP ++R F++ + VWS G
Sbjct: 209 YTTTGGKIPIRWT-APEAIAFRTFSSASDVWSFGV 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,680,448
Number of Sequences: 62578
Number of extensions: 427690
Number of successful extensions: 877
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 815
Number of HSP's gapped (non-prelim): 62
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)