Query 036067
Match_columns 295
No_of_seqs 295 out of 1771
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 09:04:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036067.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036067hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03161 Probable xyloglucan e 100.0 8.5E-82 1.8E-86 579.7 34.1 259 30-294 23-289 (291)
2 cd02176 GH16_XET Xyloglucan en 100.0 2.3E-80 4.9E-85 566.5 32.8 254 31-291 3-263 (263)
3 cd02183 GH16_fungal_CRH1_trans 100.0 8.5E-43 1.8E-47 309.1 25.0 175 40-228 12-202 (203)
4 cd02175 GH16_lichenase lichena 100.0 5.5E-38 1.2E-42 279.8 25.2 172 40-226 27-211 (212)
5 PF00722 Glyco_hydro_16: Glyco 100.0 9.1E-35 2E-39 252.1 18.2 172 36-224 3-185 (185)
6 cd02178 GH16_beta_agarase Beta 100.0 1.5E-33 3.1E-38 258.5 22.4 176 44-226 57-257 (258)
7 cd00413 Glyco_hydrolase_16 gly 100.0 1.5E-32 3.3E-37 242.5 23.8 170 40-225 25-209 (210)
8 cd08023 GH16_laminarinase_like 100.0 3.4E-32 7.4E-37 245.3 22.3 176 40-226 33-235 (235)
9 cd02177 GH16_kappa_carrageenas 100.0 1.9E-30 4.1E-35 238.8 21.8 170 44-226 43-268 (269)
10 cd02182 GH16_Strep_laminarinas 100.0 4E-30 8.6E-35 235.9 19.9 182 41-226 42-258 (259)
11 cd02180 GH16_fungal_KRE6_gluca 100.0 5.6E-30 1.2E-34 238.4 19.3 180 40-226 36-294 (295)
12 cd08024 GH16_CCF Coelomic cyto 100.0 3E-28 6.4E-33 230.6 19.1 136 64-201 100-279 (330)
13 cd02179 GH16_beta_GRP beta-1,3 100.0 6.2E-28 1.3E-32 227.5 16.7 132 65-198 98-268 (321)
14 COG2273 SKN1 Beta-glucanase/Be 99.9 1.7E-24 3.8E-29 205.9 18.9 155 40-201 74-242 (355)
15 PF06955 XET_C: Xyloglucan end 99.8 1.8E-20 3.8E-25 130.7 4.2 44 248-291 5-51 (51)
16 cd02181 GH16_fungal_Lam16A_glu 99.7 3E-17 6.6E-22 151.8 12.4 167 30-201 9-251 (293)
17 PF03935 SKN1: Beta-glucan syn 99.7 9.6E-16 2.1E-20 150.2 13.8 187 44-240 160-465 (504)
18 PF13385 Laminin_G_3: Concanav 94.1 1.6 3.4E-05 34.9 12.3 67 146-228 83-149 (157)
19 PF06439 DUF1080: Domain of Un 93.3 1 2.2E-05 38.3 10.2 113 51-177 29-156 (185)
20 smart00560 LamGL LamG-like jel 91.9 6 0.00013 32.2 14.8 70 146-230 59-130 (133)
21 PF09264 Sial-lect-inser: Vibr 89.2 0.74 1.6E-05 40.4 5.0 28 148-175 92-121 (198)
22 PF10287 DUF2401: Putative TOS 87.4 2.2 4.8E-05 38.8 7.0 79 78-159 102-206 (235)
23 smart00210 TSPN Thrombospondin 87.4 10 0.00023 32.7 11.2 88 78-175 55-144 (184)
24 smart00159 PTX Pentraxin / C-r 84.8 11 0.00023 33.3 10.1 75 146-229 88-164 (206)
25 cd00110 LamG Laminin G domain; 78.7 32 0.00069 27.5 16.8 87 74-174 19-106 (151)
26 cd00152 PTX Pentraxins are pla 76.6 51 0.0011 28.7 17.6 74 146-228 88-163 (201)
27 PF14099 Polysacc_lyase: Polys 75.9 54 0.0012 28.7 12.4 51 145-197 149-204 (224)
28 KOG1834 Calsyntenin [Extracell 73.1 21 0.00046 37.2 8.9 53 146-201 440-492 (952)
29 PF09224 DUF1961: Domain of un 67.3 20 0.00043 32.2 6.6 59 148-225 159-218 (218)
30 PF02210 Laminin_G_2: Laminin 62.1 69 0.0015 24.5 9.8 75 146-226 52-126 (128)
31 PRK02710 plastocyanin; Provisi 61.8 13 0.00028 30.0 4.0 18 41-59 43-60 (119)
32 PF00354 Pentaxin: Pentaxin fa 60.2 1.1E+02 0.0024 26.8 10.1 71 146-225 82-154 (195)
33 smart00282 LamG Laminin G doma 56.6 53 0.0012 26.0 7.0 28 147-174 61-88 (135)
34 PF02973 Sialidase: Sialidase, 46.4 2.1E+02 0.0045 25.3 12.8 132 73-229 31-176 (190)
35 PF06832 BiPBP_C: Penicillin-B 32.9 53 0.0012 24.6 3.2 34 161-194 44-77 (89)
36 PF11948 DUF3465: Protein of u 32.1 71 0.0015 26.6 3.9 25 43-67 33-57 (131)
37 cd06482 ACD_HspB10 Alpha cryst 31.1 83 0.0018 24.0 4.0 46 43-88 20-65 (87)
38 cd00070 GLECT Galectin/galacto 29.0 2.2E+02 0.0048 22.7 6.5 44 132-176 61-105 (127)
39 KOG4352 Fas-mediated apoptosis 28.8 1E+02 0.0022 26.4 4.4 38 136-174 91-128 (187)
40 KOG0674 Calreticulin [Posttran 27.2 5.8E+02 0.013 24.7 10.9 24 150-173 170-194 (406)
41 cd06526 metazoan_ACD Alpha-cry 25.9 1.5E+02 0.0033 21.8 4.6 44 42-88 18-61 (83)
42 PF07691 PA14: PA14 domain; I 25.3 1.1E+02 0.0024 24.3 4.1 30 146-176 57-86 (145)
43 PF12248 Methyltransf_FA: Farn 23.3 3.5E+02 0.0076 20.8 6.9 46 146-196 50-97 (102)
44 cd06470 ACD_IbpA-B_like Alpha- 22.2 1.4E+02 0.003 22.5 3.8 46 42-88 22-71 (90)
No 1
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=100.00 E-value=8.5e-82 Score=579.71 Aligned_cols=259 Identities=55% Similarity=1.051 Sum_probs=238.4
Q ss_pred ccCcccccceeeeeCCcEEEecCCcEEEEEEcCCCcceEEEeeeeEEEEEEEEEEecCCCCCceEEEEEEeecCCCCCee
Q 036067 30 SAGNFYNDVDIIWGQEKVEILNNGNDLTLNLDKSGGSGFQSKNEYQFGKIDMQIKLVPGNSAGTVTAYYLSSKGEKWDEI 109 (295)
Q Consensus 30 ~~~~f~~~f~~~w~~~nv~~~~~G~~l~L~ld~~sG~~i~Sk~~~~yG~~eariK~p~g~~~G~v~AFwl~~~~~~~~EI 109 (295)
...+|.++|.++|+.+|+.+.++|..|+|+||+.+|++|+||+.|+||+||+|||+|+|+++|+||||||++.++.+|||
T Consensus 23 ~~~~f~~~~~~~w~~~~~~~~~~g~~l~L~ld~~sgs~~~Sk~~f~yGr~E~riKLp~G~saG~v~AFwl~s~~~~~dEI 102 (291)
T PLN03161 23 VEADFSKSMYFTWGADHSSMLGNGDNLQLVLDQSSGSGIKSKRAFLFGSIEMLIKLVPGNSAGTVTAYYLSSTGSRHDEI 102 (291)
T ss_pred ccccccccceeeEcCCcEEEeCCCCEEEEEEeCCccCcEEecceEEEEEEEEEEEeCCCCCCCeEEEEEecCCCCCCCeE
Confidence 45679999999999999999877788999999999999999999999999999999998889999999999977789999
Q ss_pred EEeecCCCCCCceEEEeeeecCCCCCceeeEecCCCCCcccEEEEEEEcccEEEEEEcCeeEEEEecCC--CCCCCCCCc
Q 036067 110 DFEFLGNVSGEPYTLHTNVICQGQGAREQQFHLWFDPTVDFHTYSILWSPERIIFYVDDIPIREFEKME--NLPFPENQA 187 (295)
Q Consensus 110 D~E~lG~~~g~~~~~~tn~~~~g~g~~~~~~~l~fdp~~dfHtY~i~W~p~~I~fyVDG~~vr~~~~~~--g~~~P~~~P 187 (295)
||||||+++++++++|+|+|.+|.+++++++.++|||+++||+|+|+|+|++|+|||||++||++++.+ +.+||+++|
T Consensus 103 DiEfLG~~~g~~~~vqtN~y~~g~g~re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVDG~~iRt~~~~~~~g~~yP~~~p 182 (291)
T PLN03161 103 DFEFLGNVSGQPYTIHTNIYTQGNGSREQQFRPWFDPTADFHNYTIHWNPSEVVWYVDGTPIRVFRNYENEGIAYPNKQG 182 (291)
T ss_pred EEEecCCCCCCceEEEeceEeCCcCCcceeccccCCCccCcEEEEEEEchhhEEEEECCEEEEEEEcccccCCcCCCccc
Confidence 999999998999999999999999999999999999999999999999999999999999999998765 678999889
Q ss_pred eEEEEeeecCCCccCCCCccccCCCCCCEEEEEeEEEEeeeecCCC--CCCCCCCCCCCCCCCccccc----cCCCHHHH
Q 036067 188 MRIYSTLWNADDWATQGGRVKTDWSYAPFTASYRNFNADACVWSNG--ASSCNSNDPSTGWSSKPWVW----QRLDDGKR 261 (295)
Q Consensus 188 m~l~~nlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v~~c~~~~~--~~~c~~~~~~~~~~~~~~~~----~~l~~~~~ 261 (295)
|+|++|||+|++|||+||++||||+++||+|.|++|+++||.++++ ...|..++ ...||+ ++|+++|+
T Consensus 183 M~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~~~~~~~c~~~~------~~~~~~~~~~~~l~~~~~ 256 (291)
T PLN03161 183 MRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNGPVSIKQCADPT------PSNWWTSPSYSQLTNAQL 256 (291)
T ss_pred eEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCCCCCccccCCCC------ccccccCccccCCCHHHH
Confidence 9999999999999999999999999999999999999999987653 24686421 234665 48999999
Q ss_pred HHHHHHhhcCeEeccccCCCCCCCCCCCCccCC
Q 036067 262 GQMKWVQDNYMIYDYCKDNKRFSQGLAPECTRA 294 (295)
Q Consensus 262 ~~~~~~~~~~~~y~yc~d~~r~~~~~p~ec~~~ 294 (295)
++|+|||+||||||||+|++|||+++||||.++
T Consensus 257 ~~~~~v~~~~m~Y~YC~D~~R~~~~~p~EC~~~ 289 (291)
T PLN03161 257 TQMKKVRDNFMIYDYCKDTKRFNGVMPPECFKP 289 (291)
T ss_pred HHHHHHHhCcEEEeccCCCCcCCCCcCcccCCC
Confidence 999999999999999999999998789999875
No 2
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
Probab=100.00 E-value=2.3e-80 Score=566.46 Aligned_cols=254 Identities=55% Similarity=1.085 Sum_probs=235.9
Q ss_pred cCcccccceeeeeCCcEEEecCCcEEEEEEcCCCcceEEEeeeeEEEEEEEEEEecCCCCCceEEEEEEeec-CCCCCee
Q 036067 31 AGNFYNDVDIIWGQEKVEILNNGNDLTLNLDKSGGSGFQSKNEYQFGKIDMQIKLVPGNSAGTVTAYYLSSK-GEKWDEI 109 (295)
Q Consensus 31 ~~~f~~~f~~~w~~~nv~~~~~G~~l~L~ld~~sG~~i~Sk~~~~yG~~eariK~p~g~~~G~v~AFwl~~~-~~~~~EI 109 (295)
+.+|.++|.++|+++|+++.++|..|+|+||+.+|++|+||..|+||+||||||+|+++++|+||||||+++ ||.++||
T Consensus 3 ~~~f~~~~~~~w~~~~~~~~~~g~~~~L~ld~~s~~~i~Sk~~f~YG~~E~riKlp~g~s~G~~pAFwl~~~~wp~~~EI 82 (263)
T cd02176 3 AASFDENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPPGDSAGTVTAFYLSSQGPDNHDEI 82 (263)
T ss_pred cCCccccceeeEcCCcEEEeCCCCEEEEEEcCCCCccEEEccEEEEEEEEEEEEeCCCCCCCeEEEEEECCCCCCCCCeE
Confidence 467999999999999999998888899999999999999999999999999999999877899999999997 5899999
Q ss_pred EEeecCCCCCCceEEEeeeecCCCCCceeeEecCCCCCcccEEEEEEEcccEEEEEEcCeeEEEEecCC--CCCCCCCCc
Q 036067 110 DFEFLGNVSGEPYTLHTNVICQGQGAREQQFHLWFDPTVDFHTYSILWSPERIIFYVDDIPIREFEKME--NLPFPENQA 187 (295)
Q Consensus 110 D~E~lG~~~g~~~~~~tn~~~~g~g~~~~~~~l~fdp~~dfHtY~i~W~p~~I~fyVDG~~vr~~~~~~--g~~~P~~~P 187 (295)
|||++|+.+|+++++|||+|.+|.+++++++.++|||+++||+|+|+|+|++|+|||||++||++++.+ +.+||+++|
T Consensus 83 D~E~lGn~~g~~~~~qtnv~~~g~g~r~~~~~l~fdpt~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~P 162 (263)
T cd02176 83 DFEFLGNVTGQPYTLQTNVFANGVGGREQRIYLWFDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYPSSQP 162 (263)
T ss_pred EEEEecccCCCceEEEEEEeCCCCCCCceeeecCCCCCCCeEEEEEEEccceEEEEECCEEEEEEecccccCCCCCccce
Confidence 999999998899999999999999999999999999999999999999999999999999999999865 678998899
Q ss_pred eEEEEeeecCCCccCCCCccccCCCCCCEEEEEeEEEEeeeecCCCCCCCCCCCCCCCCCCccccc----cCCCHHHHHH
Q 036067 188 MRIYSTLWNADDWATQGGRVKTDWSYAPFTASYRNFNADACVWSNGASSCNSNDPSTGWSSKPWVW----QRLDDGKRGQ 263 (295)
Q Consensus 188 m~l~~nlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v~~c~~~~~~~~c~~~~~~~~~~~~~~~~----~~l~~~~~~~ 263 (295)
|+|++|||+||+|||+||++|+||+++||+|.|++|+|++|.+++....|..+. ...||+ ++|+++|+++
T Consensus 163 m~l~~niW~g~~WAt~gG~~~~d~~~aPf~a~~~~~~~~~c~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~ 236 (263)
T cd02176 163 MGVYASIWDGSDWATQGGRVKIDWSYAPFVASYRDFKLDGCVVDPGDSFSSCSC------TEDWWNGSTYQQLSANQQRA 236 (263)
T ss_pred EEEEEeeEcCCCcccCCCcccccCCCCCeeEEEeeEEEeeeecCCCCccccCCC------ccccccccccccCCHHHHHH
Confidence 999999999999999999999999999999999999999999876656675421 133554 5899999999
Q ss_pred HHHHhhcCeEeccccCCCCCCCCCCCCc
Q 036067 264 MKWVQDNYMIYDYCKDNKRFSQGLAPEC 291 (295)
Q Consensus 264 ~~~~~~~~~~y~yc~d~~r~~~~~p~ec 291 (295)
|+|||+||||||||+|++|||. +||||
T Consensus 237 ~~~~~~~~~~y~yC~d~~r~~~-~p~ec 263 (263)
T cd02176 237 MEWVRRNYMVYDYCDDRKRYPV-PPPEC 263 (263)
T ss_pred HHHHHHCCEEEecCCCCCcCCC-CcCCC
Confidence 9999999999999999999995 89999
No 3
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=8.5e-43 Score=309.09 Aligned_cols=175 Identities=29% Similarity=0.568 Sum_probs=152.9
Q ss_pred eeeeCCcEEEecCCcEEEEEEcCC-CcceEEEeeeeEEEEEEEEEEecCCCCCceEEEEEEeecCCCCCeeEEeecCCCC
Q 036067 40 IIWGQEKVEILNNGNDLTLNLDKS-GGSGFQSKNEYQFGKIDMQIKLVPGNSAGTVTAYYLSSKGEKWDEIDFEFLGNVS 118 (295)
Q Consensus 40 ~~w~~~nv~~~~~G~~l~L~ld~~-sG~~i~Sk~~~~yG~~eariK~p~g~~~G~v~AFwl~~~~~~~~EID~E~lG~~~ 118 (295)
.+..+++|... ++ .|.|+|++. +|++|.|++.|+||+||||||+|.+ +|+||||||+++ .++|||||++|+
T Consensus 12 ~~~~~~~~~~~-~~-~~~l~~~~~~~~~~i~s~~~f~YG~~EaR~Klp~g--~G~wpAfWl~~~--~~gEIDIE~~G~-- 83 (203)
T cd02183 12 WTVTSGTVDYD-DD-GASLTIPKRGDGPTISSTFYIFYGKVEVTMKAAPG--QGIVSSFVLQSD--DLDEIDWEWVGG-- 83 (203)
T ss_pred cEecCCcEeEC-CC-eEEEEEcCCCCCCeEEeccEEEeEEEEEEEEecCC--CeEEEEEEEECC--CCCEEEEEecCC--
Confidence 34567788886 33 499999887 7999999999999999999999998 899999999987 579999999996
Q ss_pred CCceEEEeeeecCCCC---CceeeEecCCCCCcccEEEEEEEcccEEEEEEcCeeEEEEecCC---CCCCCCCCceEEEE
Q 036067 119 GEPYTLHTNVICQGQG---AREQQFHLWFDPTVDFHTYSILWSPERIIFYVDDIPIREFEKME---NLPFPENQAMRIYS 192 (295)
Q Consensus 119 g~~~~~~tn~~~~g~g---~~~~~~~l~fdp~~dfHtY~i~W~p~~I~fyVDG~~vr~~~~~~---g~~~P~~~Pm~l~~ 192 (295)
++..+|+|++.++.. ++.+.+.+.++++++||+|+|+|+|++|+|||||++++++++.+ +..||. +||+|++
T Consensus 84 -~~~~~~tn~~~~g~~~~~~~~~~~~~~~~~~~dFHtY~veWtpd~I~~yVDG~~v~~~~~~~~~~~~~~p~-~P~~l~l 161 (203)
T cd02183 84 -DLTQVQTNYFGKGNTTTYDRGGYHPVPNPQTEEFHTYTIDWTKDRITWYIDGKVVRTLTKADTTGGYGYPQ-TPMRLQI 161 (203)
T ss_pred -CCCEEEeEEECCCCCCCCCCceEeeCCCCCCcCcEEEEEEEecCEEEEEECCEEEEEEehhhcccCCCCCC-CCcEEEE
Confidence 467899999977654 34566778888889999999999999999999999999998754 567996 9999999
Q ss_pred eeecCCC---------ccCCCCccccCCCCCCEEEEEeEEEEeee
Q 036067 193 TLWNADD---------WATQGGRVKTDWSYAPFTASYRNFNADAC 228 (295)
Q Consensus 193 nlw~gg~---------Wat~GG~~~~d~~~~Pf~a~~~~~~v~~c 228 (295)
|+|+||+ || ||+ +||+.+||+|.|++|+|.++
T Consensus 162 n~W~gg~~~~~~g~~~Wa--Gg~--~d~~~~P~~~~vd~v~v~~~ 202 (203)
T cd02183 162 GIWAGGDPSNAPGTIEWA--GGE--TDYDKGPFTMYVKSVTVTDY 202 (203)
T ss_pred EEecCCCccccCCcccCC--CCc--cCCCCCCEEEEEEEEEEEeC
Confidence 9999985 99 886 89999999999999999764
No 4
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=100.00 E-value=5.5e-38 Score=279.75 Aligned_cols=172 Identities=31% Similarity=0.625 Sum_probs=147.3
Q ss_pred eeeeCCcEEEecCCcEEEEEEcCC-------CcceEEEeeeeEEEEEEEEEEecCCCCCceEEEEEEeec---CCCCCee
Q 036067 40 IIWGQEKVEILNNGNDLTLNLDKS-------GGSGFQSKNEYQFGKIDMQIKLVPGNSAGTVTAYYLSSK---GEKWDEI 109 (295)
Q Consensus 40 ~~w~~~nv~~~~~G~~l~L~ld~~-------sG~~i~Sk~~~~yG~~eariK~p~g~~~G~v~AFwl~~~---~~~~~EI 109 (295)
.+|.++||.+. +|. |+|++.+. ++++|.|+.+|+||+||+|||+|.+ .|+|+||||++. +..++||
T Consensus 27 ~~~~~~nv~v~-~g~-L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~--~G~~~Afwl~~~~~~~~~~~EI 102 (212)
T cd02175 27 CTWSADNVEFS-DGG-LALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG--SGVVSSFFTYTGPYDGDPHDEI 102 (212)
T ss_pred eeEccccEEEE-CCe-EEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC--CeEEEEEEEEecCCCCCCCCEE
Confidence 57889999997 676 99998543 4799999999999999999999987 899999999974 3457999
Q ss_pred EEeecCCCCCCceEEEeeeecCCCCCceeeEecCCCCCcccEEEEEEEcccEEEEEEcCeeEEEEecCCCCCCCCCCceE
Q 036067 110 DFEFLGNVSGEPYTLHTNVICQGQGAREQQFHLWFDPTVDFHTYSILWSPERIIFYVDDIPIREFEKMENLPFPENQAMR 189 (295)
Q Consensus 110 D~E~lG~~~g~~~~~~tn~~~~g~g~~~~~~~l~fdp~~dfHtY~i~W~p~~I~fyVDG~~vr~~~~~~g~~~P~~~Pm~ 189 (295)
|||++|++ +..+|+|++.++.+.....+.+.+++.++||+|+|+|+|++|+|||||++++++...+ ..+|. +||+
T Consensus 103 DiE~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~v~W~~~~i~~yvDg~~v~~~~~~~-~~~p~-~p~~ 177 (212)
T cd02175 103 DIEFLGKD---TTKVQFNYYTNGVGGHEKLIDLGFDASEGFHTYAFEWEPDSIRWYVDGELVHEATATD-PNIPD-TPGK 177 (212)
T ss_pred EEEEccCC---CCEeEEEEECCCCCCCceEEeCCCCcccccEEEEEEEeCCEEEEEECCEEEEEEcCcc-CCCCC-CCcE
Confidence 99999974 3467888888777666666778889999999999999999999999999999998643 35786 9999
Q ss_pred EEEeeecCC---CccCCCCccccCCCCCCEEEEEeEEEEe
Q 036067 190 IYSTLWNAD---DWATQGGRVKTDWSYAPFTASYRNFNAD 226 (295)
Q Consensus 190 l~~nlw~gg---~Wat~GG~~~~d~~~~Pf~a~~~~~~v~ 226 (295)
|++|+|.|+ +|+ |. +|. .+|+.|+|++||+.
T Consensus 178 i~~n~w~~~~~~~W~---G~--~~~-~~p~~~~vd~vr~~ 211 (212)
T cd02175 178 IMMNLWPGDGVDDWL---GP--FDG-GTPLTAEYDWVSYT 211 (212)
T ss_pred EEEEEEcCCCCCCcC---Cc--CCC-CCCeEEEEEEEEEe
Confidence 999999985 598 54 466 88999999999984
No 5
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=100.00 E-value=9.1e-35 Score=252.13 Aligned_cols=172 Identities=34% Similarity=0.659 Sum_probs=147.6
Q ss_pred ccceeeeeCCcEEEecCCcEEEEEEcC-----CCcceEEEeeeeEEEEEEEEEEecCCCCCceEEEEEEeec--CCCCCe
Q 036067 36 NDVDIIWGQEKVEILNNGNDLTLNLDK-----SGGSGFQSKNEYQFGKIDMQIKLVPGNSAGTVTAYYLSSK--GEKWDE 108 (295)
Q Consensus 36 ~~f~~~w~~~nv~~~~~G~~l~L~ld~-----~sG~~i~Sk~~~~yG~~eariK~p~g~~~G~v~AFwl~~~--~~~~~E 108 (295)
+.++++|.++||.+. +|..|+|++++ .++++|+|+..++||+||+|||++.+ +|+|+||||.+. |+.++|
T Consensus 3 ~~~~~~~~~~nv~~~-~g~~L~L~~~~~~~~~~~sg~i~s~~~~~yG~~ear~k~~~~--~G~~~afwl~~~~~~~~~~E 79 (185)
T PF00722_consen 3 DQYNCTWSPDNVTVE-DGGNLVLRADKEPGKPYTSGEIQSKFSFKYGRFEARIKAPPG--PGVWPAFWLTGADGWPDGGE 79 (185)
T ss_dssp CTEEEEETCCGEEEE-TTSEEEEEEEEEETEEEEEEEEEESSEBSSEEEEEEEECSCS--TTEEEEEEEETTGSTTTTEE
T ss_pred CceEEeeCCCcEEEc-CCCEEEEEEEecccCceEeCEEEEcceeECcEEEEEEEecCC--CceEecccccccccccchhh
Confidence 568899999999997 45449999987 57899999999999999999998877 899999999753 689999
Q ss_pred eEEeecCCCCCCceEEEeeeecCCCCCc--eeeEecCCCCCcccEEEEEEEcccEEEEEEcCeeEEEEecCC--CCCCCC
Q 036067 109 IDFEFLGNVSGEPYTLHTNVICQGQGAR--EQQFHLWFDPTVDFHTYSILWSPERIIFYVDDIPIREFEKME--NLPFPE 184 (295)
Q Consensus 109 ID~E~lG~~~g~~~~~~tn~~~~g~g~~--~~~~~l~fdp~~dfHtY~i~W~p~~I~fyVDG~~vr~~~~~~--g~~~P~ 184 (295)
||||++|++. ..+|+|+|..+.+.. +.++.+.+++.++||+|+|+|+|+.|+|||||++++++.... +..+|.
T Consensus 80 IDiE~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~y~~~W~~~~i~fyiDg~~~~~~~~~~~~~~~~P~ 156 (185)
T PF00722_consen 80 IDIEFLGNDP---TQVQTNVHWNGDGDSNWEKRVPLGFDPSTDFHTYGFEWTPDRIRFYIDGKLVRTVTNSDVPGSPYPF 156 (185)
T ss_dssp EEEEEETTST---TEEEEEEEBTTBSCEEEEEEEETSSTTTTSEEEEEEEEETTEEEEEETTEEEEEEESSGSTTTCSSE
T ss_pred hhhhhccccc---cceeeeeeecccCCcccceeeccccCcCCCcEEEEEEEecCeEEEEECCEEEEEEeccccccccCcc
Confidence 9999999853 459999999888765 566777889999999999999999999999999999998765 235887
Q ss_pred CCceEEEEeeecCCCccCCCCccccCCCCCCEEEEEeEEE
Q 036067 185 NQAMRIYSTLWNADDWATQGGRVKTDWSYAPFTASYRNFN 224 (295)
Q Consensus 185 ~~Pm~l~~nlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~ 224 (295)
..||+|.+++|.+++|++..| .|++||||
T Consensus 157 ~~~~~~~~~~w~~~~~~~~~~-----------~m~vDwvr 185 (185)
T PF00722_consen 157 STPMNLALGLWPGGDWAGPAG-----------EMEVDWVR 185 (185)
T ss_dssp EEEEEEEEEECEBTTTHSSEC-----------EEEEEEEE
T ss_pred cceeEEEEccccCCCCCCCCC-----------EEEEEeEC
Confidence 789999999999999985555 46666665
No 6
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=100.00 E-value=1.5e-33 Score=258.45 Aligned_cols=176 Identities=21% Similarity=0.262 Sum_probs=135.9
Q ss_pred CCcEEEecCCcEEEEEEcCC-----------CcceEEEeeeeEEEEEEEEEEecCCCCCceEEEEEEeec-CCCCCeeE-
Q 036067 44 QEKVEILNNGNDLTLNLDKS-----------GGSGFQSKNEYQFGKIDMQIKLVPGNSAGTVTAYYLSSK-GEKWDEID- 110 (295)
Q Consensus 44 ~~nv~~~~~G~~l~L~ld~~-----------sG~~i~Sk~~~~yG~~eariK~p~g~~~G~v~AFwl~~~-~~~~~EID- 110 (295)
++|+.+. +|+ |+|++.+. ++++|.||+.++||+||||||+|.+ . .+|||||++. ++.++|||
T Consensus 57 ~~nv~v~-~G~-L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~--~-~~pAfW~~~~~~~~~gEIDI 131 (258)
T cd02178 57 ADNVSVE-DGN-LVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL--P-MSSAFWLLSDTKDSTTEIDI 131 (258)
T ss_pred cCCeEEE-CCE-EEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC--C-ccceEEEccCCCCCCCcEEh
Confidence 5678775 677 99998543 3689999999999999999999976 4 5899999996 67899999
Q ss_pred EeecCCCC--CCceEEEeeeecCCCC-----Cc---eeeEecCCCCCcccEEEEEEEc-ccEEEEEEcCeeEEEEecCC-
Q 036067 111 FEFLGNVS--GEPYTLHTNVICQGQG-----AR---EQQFHLWFDPTVDFHTYSILWS-PERIIFYVDDIPIREFEKME- 178 (295)
Q Consensus 111 ~E~lG~~~--g~~~~~~tn~~~~g~g-----~~---~~~~~l~fdp~~dfHtY~i~W~-p~~I~fyVDG~~vr~~~~~~- 178 (295)
||++|++. ..+..+|+++|....+ .+ ...+...++..++||+|+|+|+ |++|+|||||++++++.+.+
T Consensus 132 ~E~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~p~~i~fyvDG~~~~~~~~~~~ 211 (258)
T cd02178 132 LEHYGGDREEWFATRMNSNTHVFIRDPEQDYQPKDDGSWYYNPTELADDFHVYGVYWKDPDTIRFYIDGVLVRTVENSEI 211 (258)
T ss_pred hhccCCCCCccccceeeeeEEEccCCCCCCccccccceeecCCCccccCeEEEEEEEcCCCeEEEEECCEEEEEEcCccc
Confidence 89999763 2245788887643221 11 1234445667899999999999 99999999999999998754
Q ss_pred CCCCCCCCceEEEEeeecCCCccCCCCccccCCCCCCEEEEEeEEEEe
Q 036067 179 NLPFPENQAMRIYSTLWNADDWATQGGRVKTDWSYAPFTASYRNFNAD 226 (295)
Q Consensus 179 g~~~P~~~Pm~l~~nlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v~ 226 (295)
...+|+++||+|+||+++|| |+...+.. ..-...|..|.||+|||.
T Consensus 212 ~~~~~f~~p~~liln~avg~-w~g~~~~~-~~~~~~p~~m~VDYVRvy 257 (258)
T cd02178 212 TDGTGFDQPMYIIIDTETYD-WRGEPTDE-ELADDSKNTFYVDYVRVY 257 (258)
T ss_pred CcCCcCCCCeEEEEEecccc-CCCCCCcc-ccCCCCCCeEEEEEEEEe
Confidence 44578889999999999998 98211121 222456999999999985
No 7
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=1.5e-32 Score=242.49 Aligned_cols=170 Identities=35% Similarity=0.586 Sum_probs=142.2
Q ss_pred eeeeCCcEEEecCCcEEEEEEcCC------CcceEEE-eeeeEEEEEEEEEEecCCCCCceEEEEEEeecC---CCCCee
Q 036067 40 IIWGQEKVEILNNGNDLTLNLDKS------GGSGFQS-KNEYQFGKIDMQIKLVPGNSAGTVTAYYLSSKG---EKWDEI 109 (295)
Q Consensus 40 ~~w~~~nv~~~~~G~~l~L~ld~~------sG~~i~S-k~~~~yG~~eariK~p~g~~~G~v~AFwl~~~~---~~~~EI 109 (295)
..|.++||.+.++|. |+|++.+. ++++|.| ++.|+||+||+|||++.+ .|+|+||||++.. +..+||
T Consensus 25 ~~~~~~nv~~~~~G~-L~l~~~~~~~~~~~~sg~i~s~~~~~~yG~~ear~k~~~~--~G~~~afw~~~~~~~~~~~~EI 101 (210)
T cd00413 25 MTNSPNNVYVENDGG-LTLRTDRDQTDGPYSSAEIDSQKNNYTYGYYEARAKLAGG--PGAVSAFWTYSDDDDPPDGGEI 101 (210)
T ss_pred EEECccCEEEeCCCe-EEEEEEecCCCCceEeEEEEeCcceEeeEEEEEEEEcCCC--CceEEEEEEeCCCCCCCCCCeE
Confidence 567899999985576 99998543 5789999 999999999999999987 8999999999973 679999
Q ss_pred EEeecCCCCCCceEEEeeeecCCCC-----CceeeEecCCCCCcccEEEEEEEcccEEEEEEcCeeEEEEecCCCCCCCC
Q 036067 110 DFEFLGNVSGEPYTLHTNVICQGQG-----AREQQFHLWFDPTVDFHTYSILWSPERIIFYVDDIPIREFEKMENLPFPE 184 (295)
Q Consensus 110 D~E~lG~~~g~~~~~~tn~~~~g~g-----~~~~~~~l~fdp~~dfHtY~i~W~p~~I~fyVDG~~vr~~~~~~g~~~P~ 184 (295)
|||+++++ +..+++++|..+.+ .....+.+++++.++||+|+|+|+|++|+|||||++++++.+. .|.
T Consensus 102 DiE~~~~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~~~W~~~~i~~yvDG~~~~~~~~~----~p~ 174 (210)
T cd00413 102 DIEFLGRD---PTTVQTNVHWPGYGAGATTGEEKSVHLPFDPADDFHTYRVDWTPGEITFYVDGVLVATITNQ----VPD 174 (210)
T ss_pred EEEecccC---CCeEEEEEecCCCCcccccccceeecCCCCCccCeEEEEEEEeCCEEEEEECCEEEEEECCC----CCC
Confidence 99999874 45678888876543 2234455666678999999999999999999999999999753 676
Q ss_pred CCceEEEEeeecCCCccCCCCccccCCCCCCEEEEEeEEEE
Q 036067 185 NQAMRIYSTLWNADDWATQGGRVKTDWSYAPFTASYRNFNA 225 (295)
Q Consensus 185 ~~Pm~l~~nlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v 225 (295)
+||+|+||+|.+++|+ |. .+....|..+.|++|||
T Consensus 175 -~p~~i~ln~~~~~~~~---~~--~~~~~~~~~~~Vd~vrv 209 (210)
T cd00413 175 -DPMNIILNLWSDGGWW---WG--GPPPGAPAYMEIDWVRV 209 (210)
T ss_pred -CCcEEEEEEEECCCCc---cc--CCCCCCCcEEEEEEEEE
Confidence 9999999999999987 22 24467899999999997
No 8
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=100.00 E-value=3.4e-32 Score=245.28 Aligned_cols=176 Identities=24% Similarity=0.421 Sum_probs=142.0
Q ss_pred eeeeCCcEEEecCCcEEEEEEcCC----------CcceEEE--eeeeEEEEEEEEEEecCCCCCceEEEEEEeec-----
Q 036067 40 IIWGQEKVEILNNGNDLTLNLDKS----------GGSGFQS--KNEYQFGKIDMQIKLVPGNSAGTVTAYYLSSK----- 102 (295)
Q Consensus 40 ~~w~~~nv~~~~~G~~l~L~ld~~----------sG~~i~S--k~~~~yG~~eariK~p~g~~~G~v~AFwl~~~----- 102 (295)
..+.++|+.+. +|. |+|++.+. .+++|.| ++.|+||+||||||+|.+ +|+||||||+++
T Consensus 33 ~~~~~~nv~v~-~G~-L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~--~G~~pafWl~~~~~~~~ 108 (235)
T cd08023 33 YTYRPENAYVE-DGN-LVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG--QGTWPAFWMLGENIKYV 108 (235)
T ss_pred EeCCCCCeEEE-CCE-EEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC--CCceeEEEEcCCCCCCC
Confidence 45678899886 676 99988542 3679999 899999999999999987 899999999985
Q ss_pred -CCCCCeeE-EeecCCCCCCceEEEeeeecCCCC----CceeeEecCC-CCCcccEEEEEEEcccEEEEEEcCeeEEEEe
Q 036067 103 -GEKWDEID-FEFLGNVSGEPYTLHTNVICQGQG----AREQQFHLWF-DPTVDFHTYSILWSPERIIFYVDDIPIREFE 175 (295)
Q Consensus 103 -~~~~~EID-~E~lG~~~g~~~~~~tn~~~~g~g----~~~~~~~l~f-dp~~dfHtY~i~W~p~~I~fyVDG~~vr~~~ 175 (295)
||..+||| ||++|+. +..+|+++|..+.. .....+.+.. +..++||+|+++|+|++|+|||||+++++++
T Consensus 109 ~w~~~~EIDI~E~~g~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~~~W~p~~i~~yvDG~~v~~~~ 185 (235)
T cd08023 109 GWPASGEIDIMEYVGNE---PNTVYGTLHGGATNDGNNGSGGSYTLPTDDLSDDFHTYAVEWTPDKITFYVDGKLYFTYT 185 (235)
T ss_pred CCCCCCcceeEecCCCC---CCeEEEEEECCCCCCCCCcccccEECCCCCcCCCcEEEEEEEECCEEEEEECCEEEEEEc
Confidence 46789999 7999975 45788888876653 2233455544 6789999999999999999999999999998
Q ss_pred cCCC---CCCCCCCceEEEEeeecCCCccCCCCccccCCCCCCEEEEEeEEEEe
Q 036067 176 KMEN---LPFPENQAMRIYSTLWNADDWATQGGRVKTDWSYAPFTASYRNFNAD 226 (295)
Q Consensus 176 ~~~g---~~~P~~~Pm~l~~nlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v~ 226 (295)
+... ..+|+++||+|+||++++++|+ |.. ......|..+.|++|||.
T Consensus 186 ~~~~~~~~~~~~~~p~~liln~~~gg~w~---g~~-~~~~~~p~~~~VDyVrvy 235 (235)
T cd08023 186 NPNTDNGGQWPFDQPFYLILNLAVGGNWP---GPP-DDDTPFPATMEVDYVRVY 235 (235)
T ss_pred ccccCCcccCCCCCCcEEEEEEEEcCCCC---CCC-CCCCCCCCEEEEEEEEEC
Confidence 7541 2356679999999999999998 532 234567999999999983
No 9
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=99.97 E-value=1.9e-30 Score=238.84 Aligned_cols=170 Identities=26% Similarity=0.350 Sum_probs=129.4
Q ss_pred CCcEEEecCCcEEEEEEcCC-------------------CcceEEEeeeeEEEEEEEEEEecC-CCCCceEEEEEEeec-
Q 036067 44 QEKVEILNNGNDLTLNLDKS-------------------GGSGFQSKNEYQFGKIDMQIKLVP-GNSAGTVTAYYLSSK- 102 (295)
Q Consensus 44 ~~nv~~~~~G~~l~L~ld~~-------------------sG~~i~Sk~~~~yG~~eariK~p~-g~~~G~v~AFwl~~~- 102 (295)
++|+.+. +|. |+|++.+. ++++|.||.+|+||+||||||+++ + .|+||||||+++
T Consensus 43 ~~Nv~v~-dG~-L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRik~~p~~--~G~wpAfW~~~~~ 118 (269)
T cd02177 43 EKNVVIS-NGI-LELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARIKGADIF--PGVCPSFWLYSDI 118 (269)
T ss_pred ccceEEe-CCE-EEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEEECCCCC--CceEeEEEEeccC
Confidence 4677774 787 99998542 467899999999999999999865 5 899999999974
Q ss_pred --------CCCCCeeE-EeecCCC---CCC----ceEEEeeeecCCCCC--c--------eeeEecCCCCCcccEEEEEE
Q 036067 103 --------GEKWDEID-FEFLGNV---SGE----PYTLHTNVICQGQGA--R--------EQQFHLWFDPTVDFHTYSIL 156 (295)
Q Consensus 103 --------~~~~~EID-~E~lG~~---~g~----~~~~~tn~~~~g~g~--~--------~~~~~l~fdp~~dfHtY~i~ 156 (295)
||.++||| ||.+|.. .++ ..++|++++.++.+. + ...+.+++|++++||+|+|+
T Consensus 119 ~~~~~~~gwp~~GEIDImE~~g~~~~~~~~~~~~~~~~H~~~~~~g~g~w~~~~~~~~~~~~~~~~~~d~~~~fH~y~v~ 198 (269)
T cd02177 119 DYSVANEGEVVYSEIDVVELQQFDWYHQDDIRDMDHNLHAIVKENGQGVWKRPKMYPPTEQLNYHRPFDPSKDFHTYGCN 198 (269)
T ss_pred CCCcccCCCCCCCeEEEEEEecCCccccccccccceEEEEeEecCCcccccCccccccccceEEccCCCCccCcEEEEEE
Confidence 68899999 8888753 112 345777665554431 1 12456778899999999999
Q ss_pred EcccEEEEEEcCeeEEEEecCCCCCCCCCCceEEEEeeecCC---------CccCCCCccccCCCCCCEEEEEeEEEEe
Q 036067 157 WSPERIIFYVDDIPIREFEKMENLPFPENQAMRIYSTLWNAD---------DWATQGGRVKTDWSYAPFTASYRNFNAD 226 (295)
Q Consensus 157 W~p~~I~fyVDG~~vr~~~~~~g~~~P~~~Pm~l~~nlw~gg---------~Wat~GG~~~~d~~~~Pf~a~~~~~~v~ 226 (295)
|+|++|+|||||++++++.+. +. +.||.+.+++-.+. .|+ |+. .+.+.+|-.|++|+|||.
T Consensus 199 W~~~~i~~yvDg~~~~~~~~~----~w-~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~--~~~~~fP~~m~VDyVRv~ 268 (269)
T cd02177 199 VNQDEIIWYVDGVEVGRKPNK----YW-HRPMNVTLSLGLRKPFVKFFDNKNNA--KAR--EKASDFPTSMYVDYVRVW 268 (269)
T ss_pred EeCCEEEEEECCEEEEEEcCC----cc-ccccEEeeccccCcchhhhhccccCC--CCC--CccCcCCceEEEEEEEEe
Confidence 999999999999999999753 33 37888888875432 244 443 345678999999999985
No 10
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=99.97 E-value=4e-30 Score=235.86 Aligned_cols=182 Identities=15% Similarity=0.165 Sum_probs=126.9
Q ss_pred eeeCCcEEEecCCcEEEEEEcCC-----CcceEEEeeee--EE----EEEEEEEEecCCC---CCceEEEEEEeec----
Q 036067 41 IWGQEKVEILNNGNDLTLNLDKS-----GGSGFQSKNEY--QF----GKIDMQIKLVPGN---SAGTVTAYYLSSK---- 102 (295)
Q Consensus 41 ~w~~~nv~~~~~G~~l~L~ld~~-----sG~~i~Sk~~~--~y----G~~eariK~p~g~---~~G~v~AFwl~~~---- 102 (295)
+++++|+.+..+|. |+|++.+. ++++|.|+.++ .| |+||||||+|.+. ..|+||||||++.
T Consensus 42 ~~~~~n~~v~~dG~-L~I~a~~~~~~~ytSg~i~s~~~~~~~~~gg~~~~EaRik~p~~~~~~~~G~wPAfWll~~~~~~ 120 (259)
T cd02182 42 TNSTANVQLSGNGT-LQITPLRDGSGKWTSGRIETTRTDFAAPPGGKLRVEASIRLGDVPGSNQQGIWPAFWMLGDSYRG 120 (259)
T ss_pred cCCCcCEEEcCCCe-EEEEEEecCCCCEEEEEEEECCccccccCCCcEEEEEEEECCCCcccCCCCcCeeeeccCCCccC
Confidence 45578998865787 99988543 46889997654 33 4899999999741 3799999999984
Q ss_pred ----CCCCCeeE-EeecCCCCCCceEEEeeeecCCCCCceeeEec-CCCCCcccEEEEEEEcc-----cEEEEEEcCeeE
Q 036067 103 ----GEKWDEID-FEFLGNVSGEPYTLHTNVICQGQGAREQQFHL-WFDPTVDFHTYSILWSP-----ERIIFYVDDIPI 171 (295)
Q Consensus 103 ----~~~~~EID-~E~lG~~~g~~~~~~tn~~~~g~g~~~~~~~l-~fdp~~dfHtY~i~W~p-----~~I~fyVDG~~v 171 (295)
||..+||| ||..|.......++|...+..+..+....... ...+.++||+|+++|++ ++|+|||||+++
T Consensus 121 ~~~~WP~~GEIDImE~~~~~~~~~~t~H~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~~yvDG~~~ 200 (259)
T cd02182 121 NGTNWPACGELDIMENVNGLSTGYGTLHCGVAPGGPCNEPTGIGAGTRLCDTGFHTYAVEIDRTNGDAESIRWYLDGVVY 200 (259)
T ss_pred CCCCCCccceeeeeeccCCCCceEEEEeeCCCCCCCCccccCcccCCCCCCCCcEEEEEEEccCCCCCCEEEEEECCEEE
Confidence 68889999 99998643222233332211111111111100 11245899999999997 999999999999
Q ss_pred EEEecCC-----CCCCCCCCceEEEEeeecCCCccCCCCccc-cCCCCCCEEEEEeEEEEe
Q 036067 172 REFEKME-----NLPFPENQAMRIYSTLWNADDWATQGGRVK-TDWSYAPFTASYRNFNAD 226 (295)
Q Consensus 172 r~~~~~~-----g~~~P~~~Pm~l~~nlw~gg~Wat~GG~~~-~d~~~~Pf~a~~~~~~v~ 226 (295)
++++... .-+.|+++||+|+||+++||+|+ |.+. ..-...|..|.||+|||.
T Consensus 201 ~t~~~~~~~~~~~~~~~~~~p~ylIlN~avgg~w~---~~~~~~~~~~~p~~m~VDyVRVy 258 (259)
T cd02182 201 HTVTGARVGDETTWQALAHHPLFIILNVAVGGNWP---GAPNGNTATGSGSAMEVDYVAVY 258 (259)
T ss_pred EEEehhhcCCCccccCcCCCCeEEEEEEEEeCCcC---CCCCcccccCCCceEEEEEEEEe
Confidence 9997642 11234569999999999999998 4321 112356899999999985
No 11
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.97 E-value=5.6e-30 Score=238.39 Aligned_cols=180 Identities=21% Similarity=0.188 Sum_probs=127.6
Q ss_pred eeeeCCcEEEecCCcEEEEEEcC-------CCcceEEE--eeeeEEEEEEEEEEecCC-CCCceEEEEEEeec-------
Q 036067 40 IIWGQEKVEILNNGNDLTLNLDK-------SGGSGFQS--KNEYQFGKIDMQIKLVPG-NSAGTVTAYYLSSK------- 102 (295)
Q Consensus 40 ~~w~~~nv~~~~~G~~l~L~ld~-------~sG~~i~S--k~~~~yG~~eariK~p~g-~~~G~v~AFwl~~~------- 102 (295)
..+.++|+.+. +|. |+|++.+ .++++|.| |+.|+||+||||||+|.+ ...|+||||||+++
T Consensus 36 q~Y~~~nv~v~-~G~-L~I~a~~~~~~~~~ytSg~i~T~~k~~f~yG~~EaR~klp~~~~~~G~WPAfWmlg~~~~~~~~ 113 (295)
T cd02180 36 EWYDPDAVTTI-NGS-LRITMDQFRNHGLNFRSGMLQSWNKLCFTGGYIEASASLPGKPDVSGLWPAVWTMGNLGRPGYL 113 (295)
T ss_pred EEecCcCeEec-CCe-EEEEEEeecCCCCCEEEEEEEECCcceeeCCEEEEEEECCCCCCCCCcceeeeccccccccccc
Confidence 34567888875 787 9998854 25789999 788999999999999973 23799999999983
Q ss_pred ------CCC------CCeeE-EeecCCCCC-Cce---EE----------------EeeeecC------C-CCCcee-eE-
Q 036067 103 ------GEK------WDEID-FEFLGNVSG-EPY---TL----------------HTNVICQ------G-QGAREQ-QF- 140 (295)
Q Consensus 103 ------~~~------~~EID-~E~lG~~~g-~~~---~~----------------~tn~~~~------g-~g~~~~-~~- 140 (295)
||. .+||| ||.+|.+.. ... ++ |..+|.. . .++..+ ..
T Consensus 114 ~~~~~~WP~~~~~~~~GEIDImE~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 193 (295)
T cd02180 114 ATTEGVWPYSYDGRGAPEIDIIEAQVGNGLGIGQVSQSLQVAPFDAWYRPDYSSDFVTIYNDTTTIMNTYTGGVFQQAIS 193 (295)
T ss_pred ccccCCCCcccccCCCCcEEEEeeecCCCCcCceEeeEEeeccccccccCCCCccceEEecCcccccccccCCccccccc
Confidence 674 49999 999985430 001 11 1111211 0 011101 00
Q ss_pred ---ecCC----CCCcccEEEEEEEcc-----cEEEEEEcCeeEEEEecCC----C----CCCCCCCceEEEEeeecCCCc
Q 036067 141 ---HLWF----DPTVDFHTYSILWSP-----ERIIFYVDDIPIREFEKME----N----LPFPENQAMRIYSTLWNADDW 200 (295)
Q Consensus 141 ---~l~f----dp~~dfHtY~i~W~p-----~~I~fyVDG~~vr~~~~~~----g----~~~P~~~Pm~l~~nlw~gg~W 200 (295)
.+.- ...++||||+|+|+| ++|+|||||+++++++..+ + ..+| ++||+|+||+++||+|
T Consensus 194 ~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~wyvDg~~~~~~~~~~~~~~~~~~~~~~~-~~P~ylILNlAvGg~w 272 (295)
T cd02180 194 CVTRLNDSWYPGNGNEFQTYGFEYRPDDEDDGYITWFVDDEPTWTIYAKALGPNGNIGWRIIP-EEPMYIILNLGISSNF 272 (295)
T ss_pred cccccCCccccccCCCcEEEEEEEecCCCCCCEEEEEECCEEEEEEehHHcCCcccccccccC-CCCeEEEEEEEecccc
Confidence 1111 125789999999999 8999999999999998653 1 1345 5999999999999999
Q ss_pred cCCCCccccCCCCCCEEEEEeEEEEe
Q 036067 201 ATQGGRVKTDWSYAPFTASYRNFNAD 226 (295)
Q Consensus 201 at~GG~~~~d~~~~Pf~a~~~~~~v~ 226 (295)
+ |. +.+-...|..|+||+|||.
T Consensus 273 ~---g~-~~~~~~~P~~m~VDyVRVY 294 (295)
T cd02180 273 Q---DI-DWDELQFPATMRIDYVRVY 294 (295)
T ss_pred C---CC-CcccCCCCCEEEEEEEEEE
Confidence 7 43 2345567999999999985
No 12
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.96 E-value=3e-28 Score=230.62 Aligned_cols=136 Identities=21% Similarity=0.280 Sum_probs=104.9
Q ss_pred CcceEEE--eeeeEEEEEEEEEEecCCCCCceEEEEEEeec------CCCCCeeE-EeecCCCCCCc-------eEEEee
Q 036067 64 GGSGFQS--KNEYQFGKIDMQIKLVPGNSAGTVTAYYLSSK------GEKWDEID-FEFLGNVSGEP-------YTLHTN 127 (295)
Q Consensus 64 sG~~i~S--k~~~~yG~~eariK~p~g~~~G~v~AFwl~~~------~~~~~EID-~E~lG~~~g~~-------~~~~tn 127 (295)
++++|.| |+.|+|||||+|||+|.+ .|+||||||++. ||..+||| ||..|+..... ..++..
T Consensus 100 ~Sgri~T~~kf~f~YGrvE~RaKlP~G--~g~WPAfWmlp~~~~yg~WP~sGEIDImE~~Gn~~~~~~~~~~g~~~v~~t 177 (330)
T cd08024 100 MSARLRTKNSFSFKYGRVEVRAKLPTG--DWLWPAIWMLPRDNVYGGWPRSGEIDIMESRGNRPLYDGGEAIGINSVGST 177 (330)
T ss_pred EEEEEEeCCccceeceEEEEEEECCCC--CccceeeeecCCccccCCCCCCCcEEEEEEeCCCcccccccccCcceEEEE
Confidence 3578888 688999999999999998 799999999984 78899999 99999753221 245555
Q ss_pred eecCCCCC----cee---eEecCCCCCcccEEEEEEEcccEEEEEEcCeeEEEEecC----------------C-----C
Q 036067 128 VICQGQGA----REQ---QFHLWFDPTVDFHTYSILWSPERIIFYVDDIPIREFEKM----------------E-----N 179 (295)
Q Consensus 128 ~~~~g~g~----~~~---~~~l~fdp~~dfHtY~i~W~p~~I~fyVDG~~vr~~~~~----------------~-----g 179 (295)
+|...... +.. ......+..++||+|+|+|+|++|+|||||++++++... + +
T Consensus 178 lH~g~~~~~~~~~~~~~~~~~~~~~~~~~FHtY~veWtpd~I~fyVDG~~~~~v~~~~~~~w~~g~~~~~~~~~~w~~~~ 257 (330)
T cd08024 178 LHWGPDPGQNRYTKTTGKRSDSGGDFADDFHTYGLDWTPDHIRFYVDDRLILTLDVPGQGFWEFGGFSGTPIDNPWAGGG 257 (330)
T ss_pred EEeCCCCCCCccccccceeccCCCCcccCCEEEEEEEeCCEEEEEECCEEEEEEecCCCCceeeccccccccCCcccccC
Confidence 66432211 111 111223567889999999999999999999999999852 0 2
Q ss_pred CCCCCCCceEEEEeeecCCCcc
Q 036067 180 LPFPENQAMRIYSTLWNADDWA 201 (295)
Q Consensus 180 ~~~P~~~Pm~l~~nlw~gg~Wa 201 (295)
..+|+++|++|+|||++||.|.
T Consensus 258 ~~aPFd~~fyliLNvAVGG~~~ 279 (330)
T cd08024 258 KMAPFDQEFYLILNVAVGGTNG 279 (330)
T ss_pred cCCCCCCCEEEEEEEEecCCCC
Confidence 4579999999999999999985
No 13
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.95 E-value=6.2e-28 Score=227.50 Aligned_cols=132 Identities=19% Similarity=0.224 Sum_probs=99.5
Q ss_pred cceEEEe--eeeEEEEEEEEEEecCCCCCceEEEEEEeec------C-CCCCeeE-EeecCCCC----CC---ceEEEee
Q 036067 65 GSGFQSK--NEYQFGKIDMQIKLVPGNSAGTVTAYYLSSK------G-EKWDEID-FEFLGNVS----GE---PYTLHTN 127 (295)
Q Consensus 65 G~~i~Sk--~~~~yG~~eariK~p~g~~~G~v~AFwl~~~------~-~~~~EID-~E~lG~~~----g~---~~~~~tn 127 (295)
+|+|.|+ +.|+|||+|+|||||.| .|+||||||++. | |..+||| ||..|+.. |. ..++|..
T Consensus 98 Sari~Tk~~f~f~YGrvEvRAKlP~G--dglWPAiWmlP~~~~yg~w~P~sGEIDImE~~Gn~~~~~~g~~~~~~~l~~g 175 (321)
T cd02179 98 SARINTKNSFAFKYGRVEIRAKLPKG--DWIYPELLLEPVNNYYGSSDYASGQIRIAFARGNAVLRADGTDIGGKKLYGG 175 (321)
T ss_pred eeeEEECCcEeEeccEEEEEEEccCC--CCcccceeecccccccCCCCCCCCeEEEEEeCCCCccccCCceeccceEEcc
Confidence 5788884 77999999999999998 799999999985 3 7889999 99999852 11 1234444
Q ss_pred eecCCCC-Cce---eeEecCCCCCcccEEEEEEEcccEEEEEEcCeeEEEEecCC------------------CCCCCCC
Q 036067 128 VICQGQG-ARE---QQFHLWFDPTVDFHTYSILWSPERIIFYVDDIPIREFEKME------------------NLPFPEN 185 (295)
Q Consensus 128 ~~~~g~g-~~~---~~~~l~fdp~~dfHtY~i~W~p~~I~fyVDG~~vr~~~~~~------------------g~~~P~~ 185 (295)
.+..... .+. .......+..++||+|+|+|+|++|+|||||++++++.... ....|++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~ddFHtY~leWtpd~I~f~VDg~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~~aPFD 255 (321)
T cd02179 176 PVLTDAEPHRSANLKTKINNELWSDDFHVYTLEWKPDGITLMVDGEEYGEIEPGEGGYSEAANNPAASRWLGGTVMAPFD 255 (321)
T ss_pred cccCCCcccccccccccCCCCccccCcEEEEEEEeCCEEEEEECCEEEEEEecCcCccccccccccCccccccCccCCCC
Confidence 4322211 111 01111234678999999999999999999999999998531 2346999
Q ss_pred CceEEEEeeecCC
Q 036067 186 QAMRIYSTLWNAD 198 (295)
Q Consensus 186 ~Pm~l~~nlw~gg 198 (295)
+|++|+|||++||
T Consensus 256 ~~FyliLNlAVGG 268 (321)
T cd02179 256 KEFYLSLGVGVGG 268 (321)
T ss_pred CCeEEEEEEEecC
Confidence 9999999999987
No 14
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=1.7e-24 Score=205.94 Aligned_cols=155 Identities=26% Similarity=0.416 Sum_probs=130.4
Q ss_pred eeeeCCcEEEecCCcEEEEEEcC-------CCcceEEEeee--eEEEEEEEEEEecCCCCCceEEEEEEeec----CCCC
Q 036067 40 IIWGQEKVEILNNGNDLTLNLDK-------SGGSGFQSKNE--YQFGKIDMQIKLVPGNSAGTVTAYYLSSK----GEKW 106 (295)
Q Consensus 40 ~~w~~~nv~~~~~G~~l~L~ld~-------~sG~~i~Sk~~--~~yG~~eariK~p~g~~~G~v~AFwl~~~----~~~~ 106 (295)
..|..+++.+..+|. |.|.+++ .++++++|..+ |+||++|+|||++.+ .|+||||||+++ +..+
T Consensus 74 ~~w~~~~~~lt~~~~-l~l~~~~~~~~~~~y~sG~l~T~~r~~~~YG~~Evrak~~~~--~G~wpafw~~~g~~~dg~wp 150 (355)
T COG2273 74 LTWYVSNVVLTIGGT-LELDIEKFKINDRDYRSGMLTTYNRFCFTYGTYEVRAKLPLV--SGLWPAFWTLTGLSRDGGWP 150 (355)
T ss_pred cceeecceeEeeCCe-eeeeechhcccccccccceEEecCcceEeeeEEEEEeccCCC--cccceeeEeccCcccCCCCC
Confidence 467777777775555 8888854 46789999777 999999999999976 999999999984 3456
Q ss_pred CeeEEeecCCCCCCceEEEeeeecCCCCCceeeEecCC-CCCcccEEEEEEEcccEEEEEEcCeeEEEEecCCCCCCCCC
Q 036067 107 DEIDFEFLGNVSGEPYTLHTNVICQGQGAREQQFHLWF-DPTVDFHTYSILWSPERIIFYVDDIPIREFEKMENLPFPEN 185 (295)
Q Consensus 107 ~EID~E~lG~~~g~~~~~~tn~~~~g~g~~~~~~~l~f-dp~~dfHtY~i~W~p~~I~fyVDG~~vr~~~~~~g~~~P~~ 185 (295)
+|||+|++|+++. +..+|+|.+.++.++.+......+ +..++||+|.++|.++.|+|||||++++++... ...|.
T Consensus 151 ~e~d~e~lgg~~~-~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~fhty~~~W~~~~i~Wyvdg~~~~~~~~p--~~~~~- 226 (355)
T COG2273 151 DEIDIEDLGGQST-NTVIQTNHYQGGGGGTSKLVDHPNPDAIDGFHTYAFLWGEDSISWYVDGAPVATATKP--DYIPQ- 226 (355)
T ss_pred cceeeeeecCCCc-ccceEeeeeccCCCCceecccccCCCcccccccceeeccCCeEEEEEcceEeeEEecc--ccCcC-
Confidence 9999999997653 356999999998888777777777 888999999999999999999999999999864 34487
Q ss_pred CceEEEEeeecCCCcc
Q 036067 186 QAMRIYSTLWNADDWA 201 (295)
Q Consensus 186 ~Pm~l~~nlw~gg~Wa 201 (295)
.||++++|+|.++.+.
T Consensus 227 ~p~y~~~nl~~~~~~~ 242 (355)
T COG2273 227 IPFYVLVNLWMGGYAG 242 (355)
T ss_pred CcceeEEeecccCccC
Confidence 9999999999998654
No 15
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=99.81 E-value=1.8e-20 Score=130.69 Aligned_cols=44 Identities=59% Similarity=1.141 Sum_probs=36.5
Q ss_pred CccccccC---CCHHHHHHHHHHhhcCeEeccccCCCCCCCCCCCCc
Q 036067 248 SKPWVWQR---LDDGKRGQMKWVQDNYMIYDYCKDNKRFSQGLAPEC 291 (295)
Q Consensus 248 ~~~~~~~~---l~~~~~~~~~~~~~~~~~y~yc~d~~r~~~~~p~ec 291 (295)
...||++. |+++|+++|+|||+||||||||+|++|||.++|+||
T Consensus 5 ~~~w~~~~~~~L~~~q~~~m~wvr~~ymiYdYC~D~~Rfp~~~P~EC 51 (51)
T PF06955_consen 5 SKSWWNQPYAQLSAKQRRQMRWVRRNYMIYDYCTDTKRFPNPLPPEC 51 (51)
T ss_dssp TTSGGCSCCCS--HHHHHHHHHHHHHCEEEEGGG-TTT-SGCGSTTH
T ss_pred CcccccCcccCCCHHHHHHHHHHHHcCeEecccCCCCcCCCCCCCCC
Confidence 35688765 999999999999999999999999999998789999
No 16
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Group of fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Lam16A belongs to the 'nonspecific' 1,3(4)-beta-glucanase subfamily, although beta-1,6 branching and beta-1,4 bonds specifically define where Lam16A hydrolyzes its substrates, like curdlan (beta-1,3-glucan), lichenin (beta-1,3-1,4-mixed linkage glucan), and laminarin (beta-1,6-branched-1,3-glucan).
Probab=99.73 E-value=3e-17 Score=151.75 Aligned_cols=167 Identities=24% Similarity=0.383 Sum_probs=110.8
Q ss_pred ccCcccccceeee------------------eCCcEEEecCCcEEEEEEcCC---------CcceEEEeeeeEEEEEEEE
Q 036067 30 SAGNFYNDVDIIW------------------GQEKVEILNNGNDLTLNLDKS---------GGSGFQSKNEYQFGKIDMQ 82 (295)
Q Consensus 30 ~~~~f~~~f~~~w------------------~~~nv~~~~~G~~l~L~ld~~---------sG~~i~Sk~~~~yG~~ear 82 (295)
.+.+|+|+|+..= ....+.+ .+|. |.|.+|+. ++++|.||+.|.+|++|+|
T Consensus 9 ~g~~Ffd~f~f~~~~DPT~G~V~Yv~~~~A~~~gL~~v-~~g~-l~i~vd~t~~~~~~~gr~S~ri~sk~~f~~g~~~~~ 86 (293)
T cd02181 9 DGSNFFDGFDFFTGDDPTHGFVNYVDQSTATSLGLAYV-NSGN-VYLGVDSTTTLPSGAGRNSVRIESKKTYNTGLFIAD 86 (293)
T ss_pred cCCCcccCCEEcCCCCCCCeeEEEEcHHHHhhCCCeEe-eCCe-EEEEEeceeccCCCCCceEEEEEEeceeecceEEEE
Confidence 4678999998311 1122444 3566 99999754 2478999999999999999
Q ss_pred E-EecCCCCCceEEEEEEeec-CCCCCeeE-EeecCCCCCCceEEEee----eecCC--CC-------------Cc----
Q 036067 83 I-KLVPGNSAGTVTAYYLSSK-GEKWDEID-FEFLGNVSGEPYTLHTN----VICQG--QG-------------AR---- 136 (295)
Q Consensus 83 i-K~p~g~~~G~v~AFwl~~~-~~~~~EID-~E~lG~~~g~~~~~~tn----~~~~g--~g-------------~~---- 136 (295)
+ |+|.+ .|+||||||++. ||..+||| ||.++.......+|||. +-..+ .+ +.
T Consensus 87 ~~~~P~g--~G~WPAfW~~g~~WP~~GEIDImE~vn~~~~n~~tlHt~~gC~i~~~~~~tg~~~~~nC~~~~~~n~GC~v 164 (293)
T cd02181 87 IAHMPGG--CGTWPAFWTVGPNWPNGGEIDIIEGVNLQTSNQMTLHTGPGCTISNSGSFTGTVTTTNCDVNQNGNAGCGV 164 (293)
T ss_pred hhhCCCC--CCccchhhhcCCCCCCCCcEEEEeccCCCCceEEEEecCCCEEcCCCCCccCcccCCCcCCCCCCCCCcee
Confidence 8 99987 899999999986 99999999 99998755455677763 11111 00 00
Q ss_pred ----eeeEecCCCCCcccEEEEEEEcccEEEEEE---cCeeEEEEec-CC----C---CCCCC--------CCceEEEEe
Q 036067 137 ----EQQFHLWFDPTVDFHTYSILWSPERIIFYV---DDIPIREFEK-ME----N---LPFPE--------NQAMRIYST 193 (295)
Q Consensus 137 ----~~~~~l~fdp~~dfHtY~i~W~p~~I~fyV---DG~~vr~~~~-~~----g---~~~P~--------~~Pm~l~~n 193 (295)
...+...|+ ..+=-.|.++|+++.|+.+. +.+|--.... .+ | ..||. -++++|++|
T Consensus 165 ~~~~~~syG~~FN-~~GGGvyA~ew~~~~I~vWff~R~~iP~di~~~~pdPs~WG~P~A~f~~~~Cdi~~~F~~~~iVfn 243 (293)
T cd02181 165 TSTSTNSYGAGFN-AAGGGVYAMEWTSDGIKVWFFPRGSIPADITSGSPDPSTWGTPAASFPGSSCDIDSFFKDQRIVFD 243 (293)
T ss_pred ecCCCCccccccc-cCCCcEEEEEEccCcEEEEEecCCCCCcccccCCCCCcccCcccccCCCCCCChhHhcccCEEEEE
Confidence 011223343 23447999999999996554 2222111100 01 2 22442 178999999
Q ss_pred eecCCCcc
Q 036067 194 LWNADDWA 201 (295)
Q Consensus 194 lw~gg~Wa 201 (295)
+-.-|+||
T Consensus 244 ~tfCGdwA 251 (293)
T cd02181 244 TTFCGDWA 251 (293)
T ss_pred eecccccc
Confidence 99999999
No 17
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=99.66 E-value=9.6e-16 Score=150.24 Aligned_cols=187 Identities=23% Similarity=0.313 Sum_probs=124.1
Q ss_pred CCcEEEecCCcEEEEEEcCC-------CcceEEE--eeeeEEEEEEEEEEecCC-CCCceEEEEEEeec-----------
Q 036067 44 QEKVEILNNGNDLTLNLDKS-------GGSGFQS--KNEYQFGKIDMQIKLVPG-NSAGTVTAYYLSSK----------- 102 (295)
Q Consensus 44 ~~nv~~~~~G~~l~L~ld~~-------sG~~i~S--k~~~~yG~~eariK~p~g-~~~G~v~AFwl~~~----------- 102 (295)
++.|.. .+|. |+|++++. .++.++| |+=|+-|++|++++||.. +..|+|||||++++
T Consensus 160 p~~vtt-~~G~-l~i~~~~~~~~~~~y~sgm~qsWNkfCftgG~~e~~~~lPg~~~~~G~WP~~W~mGNLgRagy~ast~ 237 (504)
T PF03935_consen 160 PDAVTT-ENGS-LVITLDAFPNHNLNYRSGMLQSWNKFCFTGGYIEVSASLPGSPDVSGLWPAFWTMGNLGRAGYGASTD 237 (504)
T ss_pred CCCcEe-eCCE-EEEEEEeeeccceeEecchhhhhhhhhcCCcEEEEEEECCCCCcCCCcCchhhhccccCccccccccC
Confidence 444544 4676 99999753 3577888 666788999999999864 35799999999975
Q ss_pred --CC---------------------------------------------CCCeeE-EeecCCCCCC-c---eEEEeee--
Q 036067 103 --GE---------------------------------------------KWDEID-FEFLGNVSGE-P---YTLHTNV-- 128 (295)
Q Consensus 103 --~~---------------------------------------------~~~EID-~E~lG~~~g~-~---~~~~tn~-- 128 (295)
|| ...||| ||........ . ..+|..-
T Consensus 238 g~WPySYd~Cd~g~~~nQt~~~glS~lpgqrlsaCtc~gedhp~p~~GRgAPEIDilE~~~~~~~~~g~~SqS~Q~AP~d 317 (504)
T PF03935_consen 238 GMWPYSYDSCDVGTTPNQTSPDGLSYLPGQRLSACTCPGEDHPGPGVGRGAPEIDILEAQVGAGPGVGVVSQSLQVAPFD 317 (504)
T ss_pred ceecccccccCcccccCccccCccccCCCCcCcCCCCCCCcCCCCCCCCCCCceeEEeeeecccccccccccceeecccc
Confidence 21 013999 8977542210 1 1233211
Q ss_pred ------------ecCC-------CCCceee-E----ec---CC--CCCcccEEEEEEEccc-----EEEEEEcCeeEEEE
Q 036067 129 ------------ICQG-------QGAREQQ-F----HL---WF--DPTVDFHTYSILWSPE-----RIIFYVDDIPIREF 174 (295)
Q Consensus 129 ------------~~~g-------~g~~~~~-~----~l---~f--dp~~dfHtY~i~W~p~-----~I~fyVDG~~vr~~ 174 (295)
|... .|+.-|+ + .+ ++ ....+||+|++||.|. .|+|+|||+++.++
T Consensus 318 ~~y~~~~~~~~i~~~~~T~~N~Y~Gg~~QqAiSa~t~ln~~~Y~~~~~~~f~~YgfEy~Pg~~~~GYItW~vdg~~twti 397 (504)
T PF03935_consen 318 IWYRPDYDFYEIYNPSITQMNTYTGGVYQQAISALTQLNNDWYEEEDGGCFQTYGFEYKPGDGDDGYITWFVDGEPTWTI 397 (504)
T ss_pred cCCCCCCCceEEeCCCCceeccccChhhhhhhhcCcccCccccccCCCCceEEEEEEEEeCCCCCeEEEEEECCEEEEEE
Confidence 1000 0111111 1 11 12 1237899999999864 89999999999999
Q ss_pred ecCC--------CCCCCCCCceEEEEeeecCCCccCCCCccccCCCC--CCEEEEEeEEEEeeeecCCCCCCCCCC
Q 036067 175 EKME--------NLPFPENQAMRIYSTLWNADDWATQGGRVKTDWSY--APFTASYRNFNADACVWSNGASSCNSN 240 (295)
Q Consensus 175 ~~~~--------g~~~P~~~Pm~l~~nlw~gg~Wat~GG~~~~d~~~--~Pf~a~~~~~~v~~c~~~~~~~~c~~~ 240 (295)
.... ....|. .||+|++||....+|+ . +||.+ .|..|.||+|||..-.- ...-.|.+.
T Consensus 398 ~a~Al~~~~~I~~R~Ip~-EPMyIIlNlgmS~sf~----~--vd~~~L~FP~~M~IDYVRVYQ~~~-~~~vgCDP~ 465 (504)
T PF03935_consen 398 NAEALGPNPNIGQRPIPE-EPMYIILNLGMSSSFG----Y--VDWNHLCFPATMRIDYVRVYQPED-AINVGCDPP 465 (504)
T ss_pred EhhhcCCCCCcCccccCc-CCceeeeccccccccC----c--cccccccccceEEEeEEEEeccCC-CCeeeeCCC
Confidence 8654 135786 9999999999999996 2 67764 68899999999976431 122457653
No 18
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=94.09 E-value=1.6 Score=34.87 Aligned_cols=67 Identities=13% Similarity=0.239 Sum_probs=40.0
Q ss_pred CCcccEEEEEEEcccEEEEEEcCeeEEEEecCCCCCCCCCCceEEEEeeecCCCccCCCCccccCCCCCCEEEEEeEEEE
Q 036067 146 PTVDFHTYSILWSPERIIFYVDDIPIREFEKMENLPFPENQAMRIYSTLWNADDWATQGGRVKTDWSYAPFTASYRNFNA 225 (295)
Q Consensus 146 p~~dfHtY~i~W~p~~I~fyVDG~~vr~~~~~~g~~~P~~~Pm~l~~nlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v 225 (295)
+...||..++.|....+.+||||+++.+.........+...++.| |... ....+|...+++++|
T Consensus 83 ~~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~~~~~~~~~~~i------G~~~----------~~~~~~~g~i~~~~i 146 (157)
T PF13385_consen 83 PDNKWHHLALTYDGSTVTLYVNGELVGSSTIPSNISLNSNGPLFI------GGSG----------GGSSPFNGYIDDLRI 146 (157)
T ss_dssp -TT-EEEEEEEEETTEEEEEETTEEETTCTEESSSSTTSCCEEEE------SS-S----------TT--B-EEEEEEEEE
T ss_pred CCCCEEEEEEEEECCeEEEEECCEEEEeEeccCCcCCCCcceEEE------eecC----------CCCCceEEEEEEEEE
Confidence 358899999999999999999999876654322111111122222 2211 235689999999998
Q ss_pred eee
Q 036067 226 DAC 228 (295)
Q Consensus 226 ~~c 228 (295)
...
T Consensus 147 ~~~ 149 (157)
T PF13385_consen 147 YNR 149 (157)
T ss_dssp ESS
T ss_pred ECc
Confidence 544
No 19
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=93.30 E-value=1 Score=38.27 Aligned_cols=113 Identities=18% Similarity=0.284 Sum_probs=60.8
Q ss_pred cCCcEEE-EEEcCCCcceEEEeeeeEEEEEEEEEEecCCCCCceEEEEEEeec-------CCCCCeeEEeecCCCCCCce
Q 036067 51 NNGNDLT-LNLDKSGGSGFQSKNEYQFGKIDMQIKLVPGNSAGTVTAYYLSSK-------GEKWDEIDFEFLGNVSGEPY 122 (295)
Q Consensus 51 ~~G~~l~-L~ld~~sG~~i~Sk~~~~yG~~eariK~p~g~~~G~v~AFwl~~~-------~~~~~EID~E~lG~~~g~~~ 122 (295)
.+|. |+ .......++-|.|+..|.=..+++++|+.++ | -.++++-.. ....-|+.+.--+...
T Consensus 29 ~dG~-l~~~~~~~~~~~~l~~~~~~~df~l~~d~k~~~~---~-~sGi~~r~~~~~~~~~~~~gy~~~i~~~~~~~---- 99 (185)
T PF06439_consen 29 KDGV-LVSNGSSGSGGGYLYTDKKFSDFELEVDFKITPG---G-NSGIFFRAQSPGDGQDWNNGYEFQIDNSGGGT---- 99 (185)
T ss_dssp ETTE-EE-GGGGESSS--EEESSEBSSEEEEEEEEE-TT-----EEEEEEEESSECCSSGGGTSEEEEEE-TTTCS----
T ss_pred eCCE-EEecccCCCCcceEEECCccccEEEEEEEEECCC---C-CeEEEEEeccccCCCCcceEEEEEEECCCCcc----
Confidence 4675 44 1112234577888888888899999998544 2 334444322 1233455533322110
Q ss_pred EEEeeeecCCCCCce------eeE-ecCCCCCcccEEEEEEEcccEEEEEEcCeeEEEEecC
Q 036067 123 TLHTNVICQGQGARE------QQF-HLWFDPTVDFHTYSILWSPERIIFYVDDIPIREFEKM 177 (295)
Q Consensus 123 ~~~tn~~~~g~g~~~------~~~-~l~fdp~~dfHtY~i~W~p~~I~fyVDG~~vr~~~~~ 177 (295)
......+... ... .....+..+||++.|.-..++|+.+|||++|.++...
T Consensus 100 -----~~~~~~G~~~~~~~~~~~~~~~~~~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~ 156 (185)
T PF06439_consen 100 -----GLPNSTGSLYDEPPWQLEPSVNVAIPPGEWNTVRIVVKGNRITVWVNGKPVADFTDP 156 (185)
T ss_dssp -----TTTTSTTSBTTTB-TCB-SSS--S--TTSEEEEEEEEETTEEEEEETTEEEEEEETT
T ss_pred -----CCCCccceEEEeccccccccccccCCCCceEEEEEEEECCEEEEEECCEEEEEEEcC
Confidence 0000111100 000 1111356899999999999999999999999999864
No 20
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=91.86 E-value=6 Score=32.17 Aligned_cols=70 Identities=11% Similarity=0.149 Sum_probs=44.8
Q ss_pred CCcccEEEEEEEcc--cEEEEEEcCeeEEEEecCCCCCCCCCCceEEEEeeecCCCccCCCCccccCCCCCCEEEEEeEE
Q 036067 146 PTVDFHTYSILWSP--ERIIFYVDDIPIREFEKMENLPFPENQAMRIYSTLWNADDWATQGGRVKTDWSYAPFTASYRNF 223 (295)
Q Consensus 146 p~~dfHtY~i~W~p--~~I~fyVDG~~vr~~~~~~g~~~P~~~Pm~l~~nlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~ 223 (295)
+...||...+.++. .+|++||||+++.+.... ..+...|+.|-..... ++ ....+|.-.++.+
T Consensus 59 ~~~~W~hva~v~d~~~g~~~lYvnG~~~~~~~~~---~~~~~~~~~iG~~~~~-------~~-----~~~~~f~G~Idev 123 (133)
T smart00560 59 WIGVWVHLAGVYDGGAGKLSLYVNGVEVATSETQ---PSPSSGNLPQGGRILL-------GG-----AGGENFSGRLDEV 123 (133)
T ss_pred CCCCEEEEEEEEECCCCeEEEEECCEEccccccC---CcccCCceEEeeeccC-------CC-----CCCCCceEEeeEE
Confidence 45889999999988 799999999988654321 1222234333211111 11 1235888999999
Q ss_pred EEeeeec
Q 036067 224 NADACVW 230 (295)
Q Consensus 224 ~v~~c~~ 230 (295)
+|..++.
T Consensus 124 riy~~aL 130 (133)
T smart00560 124 RVYNRAL 130 (133)
T ss_pred EEecccc
Confidence 9987753
No 21
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets. It binds to lectins with high affinity helping to target the protein to sialic acid-rich environments, thereby enhancing the catalytic efficiency of the enzyme []. ; PDB: 1W0P_A 1W0O_A 1KIT_A 2W68_B.
Probab=89.22 E-value=0.74 Score=40.42 Aligned_cols=28 Identities=32% Similarity=0.697 Sum_probs=25.0
Q ss_pred cccEEEEEEEcc--cEEEEEEcCeeEEEEe
Q 036067 148 VDFHTYSILWSP--ERIIFYVDDIPIREFE 175 (295)
Q Consensus 148 ~dfHtY~i~W~p--~~I~fyVDG~~vr~~~ 175 (295)
.+||.|.|...| ..-.|||||++|++..
T Consensus 92 ~gyH~Y~i~~~p~~~tASfy~DG~lI~tw~ 121 (198)
T PF09264_consen 92 HGYHKYEIVFSPLTNTASFYFDGTLIATWS 121 (198)
T ss_dssp CSEEEEEEEEETTTTEEEEEETTEEEEEE-
T ss_pred cceeEEEEEecCCCCceEEEECCEEEeecc
Confidence 579999999988 8899999999999864
No 22
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi. One member is annotated putatively as OPEL, a house-keeping protein, but this could not be confirmed. It contains 5 highly conserved cysteines two of which form a characteristic CGC sequence motif.
Probab=87.40 E-value=2.2 Score=38.78 Aligned_cols=79 Identities=16% Similarity=0.200 Sum_probs=46.9
Q ss_pred EEEEEEEecCCC-----CCceEEEEEEeec---------------CC-CCCeeE-EeecCCCCCCceEEEeeeec-CCCC
Q 036067 78 KIDMQIKLVPGN-----SAGTVTAYYLSSK---------------GE-KWDEID-FEFLGNVSGEPYTLHTNVIC-QGQG 134 (295)
Q Consensus 78 ~~eariK~p~g~-----~~G~v~AFwl~~~---------------~~-~~~EID-~E~lG~~~g~~~~~~tn~~~-~g~g 134 (295)
-|-.++++|... ...=.||+||++. |. .++|+| ||.|... +. .+-+.+|. +|..
T Consensus 102 ~Flfef~MP~~~~~~~~~~~DmPAIWlLNA~IpRT~QY~~~~CSCW~sGCGEfDifEVl~~g--~~-k~~St~H~~qG~~ 178 (235)
T PF10287_consen 102 MFLFEFSMPHETDGGSGFNYDMPAIWLLNAQIPRTSQYGNAGCSCWKSGCGEFDIFEVLNSG--DD-KLKSTFHDYQGTD 178 (235)
T ss_pred EEEEEEECCCCcCCCCCCCCCcChhHhccccCcchhhcCCCCCCccCCCcccceeeeeccCC--Cc-eeEEEEecccCcc
Confidence 377788888731 2356899999974 43 689999 9999763 33 34444444 3321
Q ss_pred Cc--eeeEecCC-CCCcccEEEEEEEcc
Q 036067 135 AR--EQQFHLWF-DPTVDFHTYSILWSP 159 (295)
Q Consensus 135 ~~--~~~~~l~f-dp~~dfHtY~i~W~p 159 (295)
+. ...-.-.| -|++..-++.+.++.
T Consensus 179 ~~~~g~G~~~yf~RPt~~~~k~aVifd~ 206 (235)
T PF10287_consen 179 DINGGGGSSDYFKRPTSGTMKVAVIFDS 206 (235)
T ss_pred ccCCCCCCCCcccCCCCCCeEEEEEEcC
Confidence 00 00001112 266778888888864
No 23
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=87.38 E-value=10 Score=32.70 Aligned_cols=88 Identities=19% Similarity=0.246 Sum_probs=49.2
Q ss_pred EEEEEEEecCCCCCceEEEEEEeecCCCCCeeEEeecCCCCCCceEEEeeeecCCCCCceeeEecC-CC-CCcccEEEEE
Q 036067 78 KIDMQIKLVPGNSAGTVTAYYLSSKGEKWDEIDFEFLGNVSGEPYTLHTNVICQGQGAREQQFHLW-FD-PTVDFHTYSI 155 (295)
Q Consensus 78 ~~eariK~p~g~~~G~v~AFwl~~~~~~~~EID~E~lG~~~g~~~~~~tn~~~~g~g~~~~~~~l~-fd-p~~dfHtY~i 155 (295)
.+.+.+|..+. ..|+.-++.-- ....++-++.-|.. .++.. +..+..+..+..... .+ ....||...+
T Consensus 55 si~~~~r~~~~-~~g~L~si~~~---~~~~~l~v~l~g~~----~~~~~--~~~~~~g~~~~~~f~~~~l~dg~WH~lal 124 (184)
T smart00210 55 SLLTTFRQTPK-SRGVLFAIYDA---QNVRQFGLEVDGRA----NTLLL--RYQGVDGKQHTVSFRNLPLADGQWHKLAL 124 (184)
T ss_pred EEEEEEEeCCC-CCeEEEEEEcC---CCcEEEEEEEeCCc----cEEEE--EECCCCCcEEEEeecCCccccCCceEEEE
Confidence 35666776542 35655554331 12334445554431 12332 221222222222211 11 3578999999
Q ss_pred EEcccEEEEEEcCeeEEEEe
Q 036067 156 LWSPERIIFYVDDIPIREFE 175 (295)
Q Consensus 156 ~W~p~~I~fyVDG~~vr~~~ 175 (295)
.+..++|++|||++++.+..
T Consensus 125 ~V~~~~v~LyvDC~~~~~~~ 144 (184)
T smart00210 125 SVSGSSATLYVDCNEIDSRP 144 (184)
T ss_pred EEeCCEEEEEECCcccccee
Confidence 99999999999999987764
No 24
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=84.83 E-value=11 Score=33.31 Aligned_cols=75 Identities=17% Similarity=0.227 Sum_probs=42.4
Q ss_pred CCcccEEEEEEEc--ccEEEEEEcCeeEEEEecCCCCCCCCCCceEEEEeeecCCCccCCCCccccCCCCCCEEEEEeEE
Q 036067 146 PTVDFHTYSILWS--PERIIFYVDDIPIREFEKMENLPFPENQAMRIYSTLWNADDWATQGGRVKTDWSYAPFTASYRNF 223 (295)
Q Consensus 146 p~~dfHtY~i~W~--p~~I~fyVDG~~vr~~~~~~g~~~P~~~Pm~l~~nlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~ 223 (295)
....||...+.|+ ..++.+||||+++..-.-..+..++. +-.|++.- ..+.+ ||. .+ ....|.-.++.|
T Consensus 88 ~~g~W~hvc~tw~~~~g~~~lyvnG~~~~~~~~~~g~~i~~--~G~lvlGq-~qd~~---gg~--f~-~~~~f~G~i~~v 158 (206)
T smart00159 88 SDGKWHHICTTWESSSGIAELWVDGKPGVRKGLAKGYTVKP--GGSIILGQ-EQDSY---GGG--FD-ATQSFVGEIGDL 158 (206)
T ss_pred cCCceEEEEEEEECCCCcEEEEECCEEcccccccCCcEECC--CCEEEEEe-cccCC---CCC--CC-CCcceeEEEeee
Confidence 3578999999997 45799999999862111011222221 22333332 12222 342 23 234688888888
Q ss_pred EEeeee
Q 036067 224 NADACV 229 (295)
Q Consensus 224 ~v~~c~ 229 (295)
+|-.-+
T Consensus 159 ~iw~~~ 164 (206)
T smart00159 159 NMWDSV 164 (206)
T ss_pred EEeccc
Confidence 875543
No 25
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=78.73 E-value=32 Score=27.53 Aligned_cols=87 Identities=16% Similarity=0.120 Sum_probs=48.6
Q ss_pred eEEEEEEEEEEecCCCCCceEEEEEEeecCCCCCeeEEeecCCCCCCceEEEeeeecCCCCCceeeEecCC-CCCcccEE
Q 036067 74 YQFGKIDMQIKLVPGNSAGTVTAYYLSSKGEKWDEIDFEFLGNVSGEPYTLHTNVICQGQGAREQQFHLWF-DPTVDFHT 152 (295)
Q Consensus 74 ~~yG~~eariK~p~g~~~G~v~AFwl~~~~~~~~EID~E~lG~~~g~~~~~~tn~~~~g~g~~~~~~~l~f-dp~~dfHt 152 (295)
-....+++++|.... .|+. |++-.. ...+-|-+|... | .++..+.. + .....+.... -....||.
T Consensus 19 ~~~~~i~~~frt~~~--~g~l--~~~~~~-~~~~~~~l~l~~---g---~l~~~~~~-g--~~~~~~~~~~~v~dg~Wh~ 84 (151)
T cd00110 19 RTRLSISFSFRTTSP--NGLL--LYAGSQ-NGGDFLALELED---G---RLVLRYDL-G--SGSLVLSSKTPLNDGQWHS 84 (151)
T ss_pred cceeEEEEEEEeCCC--CeEE--EEecCC-CCCCEEEEEEEC---C---EEEEEEcC-C--cccEEEEccCccCCCCEEE
Confidence 345567777777654 5654 222221 134555566653 2 23332222 2 1222333221 23567999
Q ss_pred EEEEEcccEEEEEEcCeeEEEE
Q 036067 153 YSILWSPERIIFYVDDIPIREF 174 (295)
Q Consensus 153 Y~i~W~p~~I~fyVDG~~vr~~ 174 (295)
..+.+....++++|||.+..+.
T Consensus 85 v~i~~~~~~~~l~VD~~~~~~~ 106 (151)
T cd00110 85 VSVERNGRSVTLSVDGERVVES 106 (151)
T ss_pred EEEEECCCEEEEEECCccEEee
Confidence 9999999999999999854443
No 26
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=76.56 E-value=51 Score=28.74 Aligned_cols=74 Identities=12% Similarity=0.122 Sum_probs=41.9
Q ss_pred CCcccEEEEEEEc--ccEEEEEEcCeeEEEEecCCCCCCCCCCceEEEEeeecCCCccCCCCccccCCCCCCEEEEEeEE
Q 036067 146 PTVDFHTYSILWS--PERIIFYVDDIPIREFEKMENLPFPENQAMRIYSTLWNADDWATQGGRVKTDWSYAPFTASYRNF 223 (295)
Q Consensus 146 p~~dfHtY~i~W~--p~~I~fyVDG~~vr~~~~~~g~~~P~~~Pm~l~~nlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~ 223 (295)
....||...+.|+ ...+.+||||+++..-.-..+..++. . ..|.+.- .-..-||. .+ ..-.|.-.+++|
T Consensus 88 ~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~~~~~~~~~~-~-g~l~lG~----~q~~~gg~--~~-~~~~f~G~I~~v 158 (201)
T cd00152 88 SDGAWHHICVTWESTSGIAELWVNGKLSVRKSLKKGYTVGP-G-GSIILGQ----EQDSYGGG--FD-ATQSFVGEISDV 158 (201)
T ss_pred CCCCEEEEEEEEECCCCcEEEEECCEEeccccccCCCEECC-C-CeEEEee----cccCCCCC--CC-CCcceEEEEcee
Confidence 5678999999998 45799999999875432111222322 1 1233221 11111343 23 234688888888
Q ss_pred EEeee
Q 036067 224 NADAC 228 (295)
Q Consensus 224 ~v~~c 228 (295)
+|..-
T Consensus 159 ~iw~~ 163 (201)
T cd00152 159 NMWDS 163 (201)
T ss_pred EEEcc
Confidence 87444
No 27
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=75.91 E-value=54 Score=28.72 Aligned_cols=51 Identities=10% Similarity=0.317 Sum_probs=35.4
Q ss_pred CCCcccEEEEE--EEcc---cEEEEEEcCeeEEEEecCCCCCCCCCCceEEEEeeecC
Q 036067 145 DPTVDFHTYSI--LWSP---ERIIFYVDDIPIREFEKMENLPFPENQAMRIYSTLWNA 197 (295)
Q Consensus 145 dp~~dfHtY~i--~W~p---~~I~fyVDG~~vr~~~~~~g~~~P~~~Pm~l~~nlw~g 197 (295)
.+...||.+.| .|.+ ..|..++||+++..+.... .++.....++-+.|.-.
T Consensus 149 ~~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~g~~--~~~~~~~~y~K~GiYr~ 204 (224)
T PF14099_consen 149 VERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYKGPT--GYNDDRGPYFKFGIYRS 204 (224)
T ss_dssp S-TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEEEEE--CECCSSEEEEEEEEEEH
T ss_pred cCCCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEeCCc--eeCCCCcceeEEEEECC
Confidence 34588999987 5765 6799999999999887632 23323567777777654
No 28
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=73.08 E-value=21 Score=37.23 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=37.8
Q ss_pred CCcccEEEEEEEcccEEEEEEcCeeEEEEecCCCCCCCCCCceEEEEeeecCCCcc
Q 036067 146 PTVDFHTYSILWSPERIIFYVDDIPIREFEKMENLPFPENQAMRIYSTLWNADDWA 201 (295)
Q Consensus 146 p~~dfHtY~i~W~p~~I~fyVDG~~vr~~~~~~g~~~P~~~Pm~l~~nlw~gg~Wa 201 (295)
-.++||.|.+.-.--.|+.||||+...-+.- -..||- .|.++-.-|=+|-=|-
T Consensus 440 CD~EWH~Y~ln~efp~VtlyvDG~Sfep~~i--~ddwpl-Hpsk~~tqLvVGACW~ 492 (952)
T KOG1834|consen 440 CDNEWHHYVLNVEFPDVTLYVDGKSFEPPLI--TDDWPL-HPSKIETQLVVGACWQ 492 (952)
T ss_pred hhhhhheeEEeecCceEEEEEcCcccCCcee--ccCCcc-CcccccceeEEeeecc
Confidence 3588999999997666999999986433221 245787 6666666666677776
No 29
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=67.26 E-value=20 Score=32.25 Aligned_cols=59 Identities=22% Similarity=0.368 Sum_probs=38.0
Q ss_pred cccEEEEEEEcccEEEEEEcCeeEEEEecCCCCCCCCCCceEEEEeeecCCCccCCCCccccCCCC-CCEEEEEeEEEE
Q 036067 148 VDFHTYSILWSPERIIFYVDDIPIREFEKMENLPFPENQAMRIYSTLWNADDWATQGGRVKTDWSY-APFTASYRNFNA 225 (295)
Q Consensus 148 ~dfHtY~i~W~p~~I~fyVDG~~vr~~~~~~g~~~P~~~Pm~l~~nlw~gg~Wat~GG~~~~d~~~-~Pf~a~~~~~~v 225 (295)
..|+.-.+.=....|+|.|||.+|..+........|. -.+|+ |-..+ +|.+|.|++++|
T Consensus 159 ~~~Yr~~i~K~~~~v~f~In~L~vf~w~Dd~~~~gPv-----------------l~~G~--IGfRqMapl~A~Yrnl~V 218 (218)
T PF09224_consen 159 RGPYRMEIVKDGRTVRFSINGLPVFSWTDDGSTYGPV-----------------LRGGR--IGFRQMAPLVARYRNLEV 218 (218)
T ss_dssp -S-EEEEEEEETTEEEEEETTEEEEEEE--SSSSSS--------------------SBE--EEEEEETT-EEEEEEEEE
T ss_pred CCCEEEEEEEcCCEEEEEECCEEEEEEEcCCCccCCc-----------------ccCcE--eeeeccchhhhhhccccC
Confidence 3566667777899999999999999997543111232 01455 34444 799999999986
No 30
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=62.08 E-value=69 Score=24.49 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=46.2
Q ss_pred CCcccEEEEEEEcccEEEEEEcCeeEEEEecCCCCCCCCCCceEEEEeeecCCCccCCCCccccCCCCCCEEEEEeEEEE
Q 036067 146 PTVDFHTYSILWSPERIIFYVDDIPIREFEKMENLPFPENQAMRIYSTLWNADDWATQGGRVKTDWSYAPFTASYRNFNA 225 (295)
Q Consensus 146 p~~dfHtY~i~W~p~~I~fyVDG~~vr~~~~~~g~~~P~~~Pm~l~~nlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v 225 (295)
....||+-.|.-....++..||+............. .-+...-.++.||............ ...|.--+++++|
T Consensus 52 ~dg~wh~v~i~~~~~~~~l~Vd~~~~~~~~~~~~~~----~~~~~~~~l~iGg~~~~~~~~~~~~--~~~f~Gci~~l~v 125 (128)
T PF02210_consen 52 NDGQWHKVSISRDGNRVTLTVDGQSVSSESLPSSSS----DSLDPDGSLYIGGLPESNQPSGSVD--TPGFVGCIRDLRV 125 (128)
T ss_dssp TSSSEEEEEEEEETTEEEEEETTSEEEEEESSSTTH----HCBESEEEEEESSTTTTCTCTTSST--TSB-EEEEEEEEE
T ss_pred cccceeEEEEEEeeeeEEEEecCccceEEeccccce----ecccCCCCEEEecccCccccccccC--CCCcEEEcCeEEE
Confidence 357799999999999999999999888776532110 0222344566776544211111011 4567777777776
Q ss_pred e
Q 036067 226 D 226 (295)
Q Consensus 226 ~ 226 (295)
+
T Consensus 126 n 126 (128)
T PF02210_consen 126 N 126 (128)
T ss_dssp T
T ss_pred C
Confidence 4
No 31
>PRK02710 plastocyanin; Provisional
Probab=61.78 E-value=13 Score=29.98 Aligned_cols=18 Identities=11% Similarity=0.246 Sum_probs=10.5
Q ss_pred eeeCCcEEEecCCcEEEEE
Q 036067 41 IWGQEKVEILNNGNDLTLN 59 (295)
Q Consensus 41 ~w~~~nv~~~~~G~~l~L~ 59 (295)
.+.++.+.+. -|..++++
T Consensus 43 ~F~P~~i~v~-~Gd~V~~~ 60 (119)
T PRK02710 43 AFEPSTLTIK-AGDTVKWV 60 (119)
T ss_pred EEeCCEEEEc-CCCEEEEE
Confidence 5667777775 34446554
No 32
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits. Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....
Probab=60.24 E-value=1.1e+02 Score=26.76 Aligned_cols=71 Identities=18% Similarity=0.349 Sum_probs=37.3
Q ss_pred CCcccEEEEEEEcc--cEEEEEEcCeeEEEEecCCCCCCCCCCceEEEEeeecCCCccCCCCccccCCCCCCEEEEEeEE
Q 036067 146 PTVDFHTYSILWSP--ERIIFYVDDIPIREFEKMENLPFPENQAMRIYSTLWNADDWATQGGRVKTDWSYAPFTASYRNF 223 (295)
Q Consensus 146 p~~dfHtY~i~W~p--~~I~fyVDG~~vr~~~~~~g~~~P~~~Pm~l~~nlw~gg~Wat~GG~~~~d~~~~Pf~a~~~~~ 223 (295)
....||.+.+-|+. ..+.+||||+....-.-..+...|. .. .+++.. +=..-||. .| ..-.|.-++..|
T Consensus 82 ~~~~Whh~C~tW~s~~G~~~ly~dG~~~~~~~~~~g~~i~~-gG-~~vlGQ----eQd~~gG~--fd-~~q~F~G~i~~~ 152 (195)
T PF00354_consen 82 RDGQWHHICVTWDSSTGRWQLYVDGVRLSSTGLATGHSIPG-GG-TLVLGQ----EQDSYGGG--FD-ESQAFVGEISDF 152 (195)
T ss_dssp -TSS-EEEEEEEETTTTEEEEEETTEEEEEEESSTT--B-S-SE-EEEESS-----BSBTTBT--CS-GGGB--EEEEEE
T ss_pred CCCCcEEEEEEEecCCcEEEEEECCEecccccccCCceECC-CC-EEEECc----cccccCCC--cC-CccEeeEEEece
Confidence 35889999999975 7899999999554332222433442 22 233332 11122443 23 345788888887
Q ss_pred EE
Q 036067 224 NA 225 (295)
Q Consensus 224 ~v 225 (295)
++
T Consensus 153 ~i 154 (195)
T PF00354_consen 153 NI 154 (195)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 33
>smart00282 LamG Laminin G domain.
Probab=56.58 E-value=53 Score=26.01 Aligned_cols=28 Identities=14% Similarity=0.094 Sum_probs=23.8
Q ss_pred CcccEEEEEEEcccEEEEEEcCeeEEEE
Q 036067 147 TVDFHTYSILWSPERIIFYVDDIPIREF 174 (295)
Q Consensus 147 ~~dfHtY~i~W~p~~I~fyVDG~~vr~~ 174 (295)
...||.-.|.-....++.+|||......
T Consensus 61 dg~WH~v~i~~~~~~~~l~VD~~~~~~~ 88 (135)
T smart00282 61 DGQWHRVAVERNGRRVTLSVDGENPVSG 88 (135)
T ss_pred CCCEEEEEEEEeCCEEEEEECCCccccE
Confidence 4689999999999999999999765443
No 34
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=46.39 E-value=2.1e+02 Score=25.28 Aligned_cols=132 Identities=14% Similarity=0.247 Sum_probs=65.8
Q ss_pred eeEEEEEEEEEEecCCCCCceEEEEEEeecCC----------CCCeeEEeecCCCCCCceEEEeeeecCCCCCceeeEec
Q 036067 73 EYQFGKIDMQIKLVPGNSAGTVTAYYLSSKGE----------KWDEIDFEFLGNVSGEPYTLHTNVICQGQGAREQQFHL 142 (295)
Q Consensus 73 ~~~yG~~eariK~p~g~~~G~v~AFwl~~~~~----------~~~EID~E~lG~~~g~~~~~~tn~~~~g~g~~~~~~~l 142 (295)
...-|.+.++.|.... . .+-|++-.++.. ..+++=+|+-+......+..++.+-..+.
T Consensus 31 ~L~~gTI~i~Fk~~~~--~-~~~sLfsiSn~~~~n~YF~lyv~~~~~G~E~R~~~~~~~y~~~~~~~v~~~--------- 98 (190)
T PF02973_consen 31 KLEEGTIVIRFKSDSN--S-GIQSLFSISNSTKGNEYFSLYVSNNKLGFELRDTKGNQNYNFSRPAKVRGG--------- 98 (190)
T ss_dssp T-SSEEEEEEEEESS---S-SEEEEEEEE-TSTTSEEEEEEEETTEEEEEEEETTTTCEEEEEESSE--SE---------
T ss_pred cccccEEEEEEecCCC--c-ceeEEEEecCCCCccceEEEEEECCEEEEEEecCCCCcccccccccEeccc---------
Confidence 3445667777775432 3 344555555411 11266677776654333333332111000
Q ss_pred CCCCCcccEEEEEEEc--ccEEEEEEcCeeEEEEecCCCCCCCCCCc--eEEEEeeecCCCccCCCCccccCCCCCCEEE
Q 036067 143 WFDPTVDFHTYSILWS--PERIIFYVDDIPIREFEKMENLPFPENQA--MRIYSTLWNADDWATQGGRVKTDWSYAPFTA 218 (295)
Q Consensus 143 ~fdp~~dfHtY~i~W~--p~~I~fyVDG~~vr~~~~~~g~~~P~~~P--m~l~~nlw~gg~Wat~GG~~~~d~~~~Pf~a 218 (295)
.-....||+-++.=+ ...+.+|+||..+.+..... ..|-.+-| -.+.+ |+. .++|. ..-||.-
T Consensus 99 -~~~~~~~~tva~~ad~~~~~ykly~NG~~v~~~~~~~-~~Fis~i~~~n~~~i----G~t--~R~g~-----~~y~f~G 165 (190)
T PF02973_consen 99 -YKNNVTFNTVAFVADSKNKGYKLYVNGELVSTLSSKS-GNFISDIPGLNSVQI----GGT--NRAGS-----NAYPFNG 165 (190)
T ss_dssp -ETTEES-EEEEEEEETTTTEEEEEETTCEEEEEEECT-SS-GGGSTT--EEEE----SSE--EETTE-----EES--EE
T ss_pred -ccCCceEEEEEEEEecCCCeEEEEeCCeeEEEecccc-ccHhhcCcCCceEEE----cce--EeCCC-----ceecccc
Confidence 012356888888776 67899999998888775443 22222111 11221 211 11221 2469999
Q ss_pred EEeEEEEeeee
Q 036067 219 SYRNFNADACV 229 (295)
Q Consensus 219 ~~~~~~v~~c~ 229 (295)
.+++++|..++
T Consensus 166 ~I~~l~iYn~a 176 (190)
T PF02973_consen 166 TIDNLKIYNRA 176 (190)
T ss_dssp EEEEEEEESS-
T ss_pred eEEEEEEEcCc
Confidence 99999997764
No 35
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=32.91 E-value=53 Score=24.62 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=20.5
Q ss_pred EEEEEEcCeeEEEEecCCCCCCCCCCceEEEEee
Q 036067 161 RIIFYVDDIPIREFEKMENLPFPENQAMRIYSTL 194 (295)
Q Consensus 161 ~I~fyVDG~~vr~~~~~~g~~~P~~~Pm~l~~nl 194 (295)
.+.|||||+++.+........|+-..|-.-.+.+
T Consensus 44 ~~~W~vdg~~~g~~~~~~~~~~~~~~~G~h~l~v 77 (89)
T PF06832_consen 44 PVYWFVDGEPLGTTQPGHQLFWQPDRPGEHTLTV 77 (89)
T ss_pred cEEEEECCEEcccCCCCCeEEeCCCCCeeEEEEE
Confidence 7899999999966554332233323455555554
No 36
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=32.12 E-value=71 Score=26.58 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=17.4
Q ss_pred eCCcEEEecCCcEEEEEEcCCCcce
Q 036067 43 GQEKVEILNNGNDLTLNLDKSGGSG 67 (295)
Q Consensus 43 ~~~nv~~~~~G~~l~L~ld~~sG~~ 67 (295)
..+++.+...|..+.+..|...|++
T Consensus 33 ~qs~~qv~g~G~V~~vLpdd~~Gsr 57 (131)
T PF11948_consen 33 QQSDVQVSGCGTVVKVLPDDNKGSR 57 (131)
T ss_pred hccCeeEeccEEEEEECcccCCCCc
Confidence 3566778777776666667777876
No 37
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=31.06 E-value=83 Score=24.02 Aligned_cols=46 Identities=13% Similarity=0.320 Sum_probs=28.5
Q ss_pred eCCcEEEecCCcEEEEEEcCCCcceEEEeeeeEEEEEEEEEEecCC
Q 036067 43 GQEKVEILNNGNDLTLNLDKSGGSGFQSKNEYQFGKIDMQIKLVPG 88 (295)
Q Consensus 43 ~~~nv~~~~~G~~l~L~ld~~sG~~i~Sk~~~~yG~~eariK~p~g 88 (295)
.++.|.+.-.++.|+|+..+..-..-.....+.||.|+=++.||.+
T Consensus 20 ~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~ 65 (87)
T cd06482 20 EPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPG 65 (87)
T ss_pred CHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCC
Confidence 3555665545556888885432111011235799999999999965
No 38
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=29.04 E-value=2.2e+02 Score=22.65 Aligned_cols=44 Identities=18% Similarity=0.279 Sum_probs=31.8
Q ss_pred CCCCceeeEe-cCCCCCcccEEEEEEEcccEEEEEEcCeeEEEEec
Q 036067 132 GQGAREQQFH-LWFDPTVDFHTYSILWSPERIIFYVDDIPIREFEK 176 (295)
Q Consensus 132 g~g~~~~~~~-l~fdp~~dfHtY~i~W~p~~I~fyVDG~~vr~~~~ 176 (295)
|.-+.|++.. .+|.+ .+..+-.|.=++++...+|||+++..|..
T Consensus 61 g~Wg~Eer~~~~pf~~-g~~F~l~i~~~~~~f~i~vng~~~~~F~~ 105 (127)
T cd00070 61 GNWGPEERSGGFPFQP-GQPFELTILVEEDKFQIFVNGQHFFSFPH 105 (127)
T ss_pred CEecHhhccCCCCCCC-CCeEEEEEEEcCCEEEEEECCEeEEEecC
Confidence 3334455543 55554 44458889999999999999999988864
No 39
>KOG4352 consensus Fas-mediated apoptosis inhibitor FAIM [Signal transduction mechanisms]
Probab=28.77 E-value=1e+02 Score=26.36 Aligned_cols=38 Identities=24% Similarity=0.472 Sum_probs=28.8
Q ss_pred ceeeEecCCCCCcccEEEEEEEcccEEEEEEcCeeEEEE
Q 036067 136 REQQFHLWFDPTVDFHTYSILWSPERIIFYVDDIPIREF 174 (295)
Q Consensus 136 ~~~~~~l~fdp~~dfHtY~i~W~p~~I~fyVDG~~vr~~ 174 (295)
+.+++++|.- +.+=|.|+|.-..+.+..+++|..+++-
T Consensus 91 ~~k~~~~W~~-t~dg~~~RivL~kdtm~~w~NG~~l~Ta 128 (187)
T KOG4352|consen 91 MTKQYRLWLY-TDDGQEYRIVLKKDTMSLWVNGDELRTA 128 (187)
T ss_pred hhhheeEEEE-ecCCceEEEEEeccceeeEEcCcccccc
Confidence 3455666642 3344999999999999999999988764
No 40
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=27.25 E-value=5.8e+02 Score=24.70 Aligned_cols=24 Identities=17% Similarity=0.451 Sum_probs=20.3
Q ss_pred cEEEEEEEcccE-EEEEEcCeeEEE
Q 036067 150 FHTYSILWSPER-IIFYVDDIPIRE 173 (295)
Q Consensus 150 fHtY~i~W~p~~-I~fyVDG~~vr~ 173 (295)
=|.|++.-.|+. -...|||+.+.+
T Consensus 170 tHlYTlIlRPd~TYeVkIDn~~~es 194 (406)
T KOG0674|consen 170 THLYTLILRPDATYEVKIDNQQVES 194 (406)
T ss_pred ceeEEEEecCCCeeEEEEccccccc
Confidence 599999999985 589999998755
No 41
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=25.87 E-value=1.5e+02 Score=21.80 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=29.2
Q ss_pred eeCCcEEEecCCcEEEEEEcCCCcceEEEeeeeEEEEEEEEEEecCC
Q 036067 42 WGQEKVEILNNGNDLTLNLDKSGGSGFQSKNEYQFGKIDMQIKLVPG 88 (295)
Q Consensus 42 w~~~nv~~~~~G~~l~L~ld~~sG~~i~Sk~~~~yG~~eariK~p~g 88 (295)
+.++.+.+.-+++.|.|+..+..... ...+.+|.|+=++++|..
T Consensus 18 ~~~edI~v~v~~~~L~I~g~~~~~~~---~~~~~~~~f~r~~~LP~~ 61 (83)
T cd06526 18 FKPEELKVKVSDNKLVVEGKHEERED---EHGYVSREFTRRYQLPEG 61 (83)
T ss_pred CCHHHcEEEEECCEEEEEEEEeeecc---CCCEEEEEEEEEEECCCC
Confidence 44666666656666888875432211 345678999999999875
No 42
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=25.29 E-value=1.1e+02 Score=24.32 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=24.4
Q ss_pred CCcccEEEEEEEcccEEEEEEcCeeEEEEec
Q 036067 146 PTVDFHTYSILWSPERIIFYVDDIPIREFEK 176 (295)
Q Consensus 146 p~~dfHtY~i~W~p~~I~fyVDG~~vr~~~~ 176 (295)
+.++-|++.+. ..+.++++|||+++-....
T Consensus 57 ~~~G~y~f~~~-~~d~~~l~idg~~vid~~~ 86 (145)
T PF07691_consen 57 PETGTYTFSLT-SDDGARLWIDGKLVIDNWG 86 (145)
T ss_dssp SSSEEEEEEEE-ESSEEEEEETTEEEEECSC
T ss_pred ccCceEEEEEE-ecccEEEEECCEEEEcCCc
Confidence 56788888888 7788999999999866653
No 43
>PF12248 Methyltransf_FA: Farnesoic acid 0-methyl transferase; InterPro: IPR022041 This domain, found in farnesoic acid O-methyl transferase, is approximately 110 amino acids in length. Farnesoic acid O-methyl transferase (FAMeT) is the enzyme that catalyses the formation of methyl farnesoate (MF) from farnesoic acid (FA) in the biosynthetic pathway of juvenile hormone (JH) [].
Probab=23.33 E-value=3.5e+02 Score=20.84 Aligned_cols=46 Identities=22% Similarity=0.316 Sum_probs=34.1
Q ss_pred CCcccEEEEEEEcccEEEEEEcCe--eEEEEecCCCCCCCCCCceEEEEeeec
Q 036067 146 PTVDFHTYSILWSPERIIFYVDDI--PIREFEKMENLPFPENQAMRIYSTLWN 196 (295)
Q Consensus 146 p~~dfHtY~i~W~p~~I~fyVDG~--~vr~~~~~~g~~~P~~~Pm~l~~nlw~ 196 (295)
...+|..|-|.|....|.+..||. |+-++...+ |. ...++-++-|.
T Consensus 50 s~~e~~~fwI~~~~G~I~vg~~g~~~pfl~~~Dp~----~~-~v~yvGft~w~ 97 (102)
T PF12248_consen 50 SPSEFRMFWISWRDGTIRVGRGGEDEPFLEWTDPE----PI-PVNYVGFTGWG 97 (102)
T ss_pred CCCccEEEEEEECCCEEEEEECCCccEEEEEECCC----CC-cccEEEEecCC
Confidence 357899999999999999999987 777777432 33 34556556554
No 44
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=22.21 E-value=1.4e+02 Score=22.46 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=30.5
Q ss_pred eeCCcEEEecCCcEEEEEEcCCCcc----eEEEeeeeEEEEEEEEEEecCC
Q 036067 42 WGQEKVEILNNGNDLTLNLDKSGGS----GFQSKNEYQFGKIDMQIKLVPG 88 (295)
Q Consensus 42 w~~~nv~~~~~G~~l~L~ld~~sG~----~i~Sk~~~~yG~~eariK~p~g 88 (295)
..++++.+.-+|+.|.|+..+.... ... .+.+.+|.|+-+++||..
T Consensus 22 ~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~-~~e~~~g~f~R~~~LP~~ 71 (90)
T cd06470 22 FSEDDLEIEVENNQLTVTGKKADEENEEREYL-HRGIAKRAFERSFNLADH 71 (90)
T ss_pred CCHHHeEEEEECCEEEEEEEEcccccCCCcEE-EEEEeceEEEEEEECCCC
Confidence 3466677766677788887543221 111 245778999999999965
Done!