BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036068
(178 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255553251|ref|XP_002517668.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543300|gb|EEF44832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 512
Score = 268 bits (686), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 129/185 (69%), Positives = 152/185 (82%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK++DVISWTAIV+ + N GQ+DIAR+ FDQMPERDYV WTAMIDGYL+VN F+EAL LF
Sbjct: 250 MKSRDVISWTAIVTGFANIGQLDIARKYFDQMPERDYVSWTAMIDGYLQVNCFKEALVLF 309
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EMQTSN+ DEFT+VSILTA A L AL+LGEW++TYIDKNKVKND + GNALIDMY C
Sbjct: 310 HEMQTSNVKPDEFTMVSILTACAQLGALELGEWVRTYIDKNKVKNDAYVGNALIDMYFKC 369
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+VEKA + DKF+WT MIVGLAI+G G++ALDMF QML+AS+ PDE+ YVGVL
Sbjct: 370 GNVEKARSIFNSMPRPDKFTWTAMIVGLAINGYGEEALDMFVQMLKASVTPDEITYVGVL 429
Query: 173 SACTH 177
ACTH
Sbjct: 430 CACTH 434
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 101/210 (48%), Gaps = 39/210 (18%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+V A+++ Y G D+AR FD + D V W AMI Y R+ ++ + TLF EM+
Sbjct: 122 NVFVQNALINMYSLCGLTDMARGIFDMSYKTDVVTWNAMISAYNRIKQYDKTKTLFHEME 181
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
++ T+VS+L+A + L+ L+ G+ + YI + V++++ NALIDMY C ++
Sbjct: 182 KKRVLPSSVTLVSVLSACSKLKDLESGQKVHKYISDHVVQSNLIVENALIDMYAACGEMS 241
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGD----------------------------- 147
A +D SWT ++ G A G D
Sbjct: 242 VALGIFESMKSRDVISWTAIVTGFANIGQLDIARKYFDQMPERDYVSWTAMIDGYLQVNC 301
Query: 148 --KALDMFSQMLRASIKPDEVAYVGVLSAC 175
+AL +F +M +++KPDE V +L+AC
Sbjct: 302 FKEALVLFHEMQTSNVKPDEFTMVSILTAC 331
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 82/165 (49%), Gaps = 8/165 (4%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G ++ ARQ FD +PE W M+ GY R++ + ++++ +M ++++ D +T ++
Sbjct: 36 GDMNYARQLFDTIPEPTVFHWNTMLKGYSRIDSPKLGVSMYLDMLKNDVLPDCYTYPFLI 95
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKF 131
A + G+ + ++ K + +++F NALI+MY +C + A + D
Sbjct: 96 KGFKKDIAFEYGKELHCHVVKYGLGSNVFVQNALINMYSLCGLTDMARGIFDMSYKTDVV 155
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+W MI DK +F +M + + P V V VLSAC+
Sbjct: 156 TWNAMISAYNRIKQYDKTKTLFHEMEKKRVLPSSVTLVSVLSACS 200
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 2 KNK---DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRF-REAL 57
KNK D A++ Y G V+ AR F+ MP D WTAMI G L +N + EAL
Sbjct: 349 KNKVKNDAYVGNALIDMYFKCGNVEKARSIFNSMPRPDKFTWTAMIVG-LAINGYGEEAL 407
Query: 58 TLFQEMQTSNIMGDEFTIVSILTARANLRALDLG 91
+F +M +++ DE T V +L A + +D G
Sbjct: 408 DMFVQMLKASVTPDEITYVGVLCACTHTGMVDEG 441
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 264 bits (675), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 121/185 (65%), Positives = 152/185 (82%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M N+D+ISWT IVS + N G++D+AR FD+MPE+DYV WTAMIDGY+R NRF+EAL LF
Sbjct: 301 MNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELF 360
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ MQ +N+ DEFT+VS+LTA A+L AL+LGEWI+TYID+NK+KND+F NALIDMY C
Sbjct: 361 RNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKC 420
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
DV+KA Q+DKF+WT MIVGLA++G+G+KALDMFS ML+ASI PDE+ Y+GVL
Sbjct: 421 GDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVL 480
Query: 173 SACTH 177
SACTH
Sbjct: 481 SACTH 485
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 101/212 (47%), Gaps = 39/212 (18%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+V TA+V Y+ GQ+D AR FD P+ D + W +I Y +V +F E+ LF M+
Sbjct: 173 NVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVME 232
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
++ T+V +L+A + L+ L G+ + +Y+ KV++++ NA+IDMY C +++
Sbjct: 233 DKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMD 292
Query: 125 KA---------------------------------------QKDKFSWTTMIVGLAISGN 145
A +KD SWT MI G S
Sbjct: 293 SALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNR 352
Query: 146 GDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+AL++F M ++KPDE V VL+AC H
Sbjct: 353 FKEALELFRNMQATNVKPDEFTMVSVLTACAH 384
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 8/165 (4%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G AR+ FD++PE + +W MI GY R++ + ++L+ EM + D +T +
Sbjct: 87 GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLF 146
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKF 131
AL+ G + ++ K+ ++ ++F AL+ MY +C ++ A + D
Sbjct: 147 KGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVI 206
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+W +I G +++ +F M + P V V VLSAC+
Sbjct: 207 TWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACS 251
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 84/185 (45%), Gaps = 16/185 (8%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ A++ Y G VD A F +M +RD WTAMI G +AL +F M
Sbjct: 406 DLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNML 465
Query: 65 TSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
++I+ DE T + +L+A + +D G ++ ++ ++ +I L+D+ +
Sbjct: 466 KASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRL 525
Query: 124 EKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA-YV---G 170
++A + + W ++ G + D A + Q+L ++PD A YV
Sbjct: 526 KEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQIL--ELEPDNGAVYVLLCN 583
Query: 171 VLSAC 175
+ +AC
Sbjct: 584 IYAAC 588
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 264 bits (675), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 125/185 (67%), Positives = 150/185 (81%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MKN+DVISWT+IV+ + N GQ+D+AR+ FDQ+PERDYV WTAMIDGYLR+NRF EAL LF
Sbjct: 269 MKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALF 328
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ SN+ DEFT+VSILTA A+L AL+LGEW+KTYIDKN +KND F GNALIDMY C
Sbjct: 329 REMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKC 388
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+V KA KDKF+WT MIVGLAI+G+G++AL MFS M+ ASI PDE+ Y+GVL
Sbjct: 389 GNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVL 448
Query: 173 SACTH 177
ACTH
Sbjct: 449 CACTH 453
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 39/195 (20%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81
VD+AR+ FD + V W M+ GY RV +F+++ LF EM+ + + T+V +L+A
Sbjct: 158 VDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSA 217
Query: 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSW 133
+ L+ L+ G+ I YI+ V+ ++ N LIDM+ C ++++AQ +D SW
Sbjct: 218 CSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISW 277
Query: 134 TTMIVGLAISGNGD-------------------------------KALDMFSQMLRASIK 162
T+++ G A G D +AL +F +M +++K
Sbjct: 278 TSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVK 337
Query: 163 PDEVAYVGVLSACTH 177
PDE V +L+AC H
Sbjct: 338 PDEFTMVSILTACAH 352
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 8/165 (4%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G++ ARQ FD +P+ +W MI GY R+N + ++++ M SNI D FT +L
Sbjct: 55 GKMIYARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLL 114
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKF 131
AL G+ + + K+ +++F A I M+ +C V+ A+K +
Sbjct: 115 KGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVV 174
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+W M+ G K+ +F +M + + P+ V V +LSAC+
Sbjct: 175 TWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACS 219
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 1/125 (0%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D A++ Y G V A++ F +M +D WTAMI G EAL +F M
Sbjct: 374 DTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMI 433
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGE-WIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
++I DE T + +L A + ++ G+ + + ++ +K ++ ++D+ +
Sbjct: 434 EASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRL 493
Query: 124 EKAQK 128
E+A +
Sbjct: 494 EEAHE 498
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 264 bits (675), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 121/185 (65%), Positives = 152/185 (82%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M N+D+ISWT IVS + N G++D+AR FD+MPE+DYV WTAMIDGY+R NRF+EAL LF
Sbjct: 280 MNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELF 339
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ MQ +N+ DEFT+VS+LTA A+L AL+LGEWI+TYID+NK+KND+F NALIDMY C
Sbjct: 340 RNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKC 399
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
DV+KA Q+DKF+WT MIVGLA++G+G+KALDMFS ML+ASI PDE+ Y+GVL
Sbjct: 400 GDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVL 459
Query: 173 SACTH 177
SACTH
Sbjct: 460 SACTH 464
Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 101/212 (47%), Gaps = 39/212 (18%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+V TA+V Y+ GQ+D AR FD P+ D + W +I Y +V +F E+ LF M+
Sbjct: 152 NVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVME 211
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
++ T+V +L+A + L+ L G+ + +Y+ KV++++ NA+IDMY C +++
Sbjct: 212 DKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMD 271
Query: 125 KA---------------------------------------QKDKFSWTTMIVGLAISGN 145
A +KD SWT MI G S
Sbjct: 272 SALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNR 331
Query: 146 GDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+AL++F M ++KPDE V VL+AC H
Sbjct: 332 FKEALELFRNMQATNVKPDEFTMVSVLTACAH 363
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 8/165 (4%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G AR+ FD++PE + +W MI GY R++ + ++L+ EM + D +T +
Sbjct: 66 GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLF 125
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKF 131
AL+ G + ++ K+ ++ ++F AL+ MY +C ++ A + D
Sbjct: 126 KGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVI 185
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+W +I G +++ +F M + P V V VLSAC+
Sbjct: 186 TWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACS 230
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 84/185 (45%), Gaps = 16/185 (8%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ A++ Y G VD A F +M +RD WTAMI G +AL +F M
Sbjct: 385 DLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNML 444
Query: 65 TSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
++I+ DE T + +L+A + +D G ++ ++ ++ +I L+D+ +
Sbjct: 445 KASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRL 504
Query: 124 EKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA-YV---G 170
++A + + W ++ G + D A + Q+L ++PD A YV
Sbjct: 505 KEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQIL--ELEPDNGAVYVLLCN 562
Query: 171 VLSAC 175
+ +AC
Sbjct: 563 IYAAC 567
>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 262 bits (670), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 126/182 (69%), Positives = 150/182 (82%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KDVISWTAIV+ ++N GQVD AR+ F +MPERD+V WTAMIDGYLR+N ++EAL LF+EM
Sbjct: 195 KDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREM 254
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
QTS I DEFT+VS+LTA A L AL+LGEWI+TYIDKNKVKND F GNALIDMY C +V
Sbjct: 255 QTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNV 314
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E A Q+DKF+WT M+VGLAI+G G++AL+MFSQML+AS+ PDEV YVGVLSAC
Sbjct: 315 EMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSAC 374
Query: 176 TH 177
TH
Sbjct: 375 TH 376
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 86/212 (40%), Gaps = 56/212 (26%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G + ARQ FD +PE W M GY R+ + ++L+ EM N+ D +T +
Sbjct: 62 GDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLF 121
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA------------- 126
AL LG + ++ K + +++FA NALI+MY +C ++ A
Sbjct: 122 KGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVV 181
Query: 127 ------------QKDKFSWTTMIVGLAISGNGD--------------------------- 147
+KD SWT ++ G +G D
Sbjct: 182 TWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRL 241
Query: 148 ----KALDMFSQMLRASIKPDEVAYVGVLSAC 175
+AL +F +M + IKPDE V VL+AC
Sbjct: 242 NCYKEALMLFREMQTSKIKPDEFTMVSVLTAC 273
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 80/178 (44%), Gaps = 30/178 (16%)
Query: 2 KNK---DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALT 58
KNK D A++ Y G V++A F+ +P+RD WTAM+ G EAL
Sbjct: 291 KNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALN 350
Query: 59 LFQEMQTSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMY 117
+F +M +++ DE T V +L+A + +D G ++ + ++ ++ +I ++D+
Sbjct: 351 MFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDL- 409
Query: 118 CICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
L +G+ +A ++ M +KP+ + + +L AC
Sbjct: 410 ----------------------LGKAGHLKEAHEIIKNM---PMKPNSIVWGALLGAC 442
>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 874
Score = 259 bits (661), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 122/185 (65%), Positives = 150/185 (81%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK +DVISWT+IV+ + N ++D+AR+ FDQMPERDYV WTAMIDGYLR+NRF+E LTLF
Sbjct: 301 MKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLF 360
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++MQ SN+ DEFT+VSILTA A+L AL+LGEW KTYIDKNK+KND F GNALIDMY C
Sbjct: 361 RDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKC 420
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+VEKA +KDKF+WT MIVGLA +G+G++AL MFS ML AS+ PDE+ Y+GV+
Sbjct: 421 GNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVM 480
Query: 173 SACTH 177
ACTH
Sbjct: 481 CACTH 485
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 42/200 (21%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ--TSNIMGDEFTIVS 77
G V+ AR+ FD + V W ++ GY R R+ E+ LF EM+ + + T+V
Sbjct: 185 GLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVL 244
Query: 78 ILTARANLRALDLGEWI-KTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------K 128
+L+A + L+ L G+ I YI + V+ ++ NALIDM+ C +++ A+ +
Sbjct: 245 MLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTR 304
Query: 129 DKFSWTTMIVGLAISGNGDKALDMFSQM---------------LR--------------- 158
D SWT+++ G A + D A F QM LR
Sbjct: 305 DVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQ 364
Query: 159 -ASIKPDEVAYVGVLSACTH 177
+++KPDE V +L+AC H
Sbjct: 365 MSNVKPDEFTMVSILTACAH 384
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 11/168 (6%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G V AR+ FD++P+ +W MI GY R+N ++L++ M NI D FT +L
Sbjct: 83 GDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLL 142
Query: 80 TARANLRALDLGEWIKTY-IDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DK 130
AL G+ + + + + +++F I ++ +C V A+K +
Sbjct: 143 KGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEV 202
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRA--SIKPDEVAYVGVLSACT 176
+W ++ G +++ +F +M + + P+ V V +LSAC+
Sbjct: 203 VTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACS 250
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 254 bits (649), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 123/186 (66%), Positives = 149/186 (80%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK++DVISWTAIV+ + N GQV +AR FD+MPERD+V WTAMIDGYL+VNRF+E L+LF
Sbjct: 281 MKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLF 340
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ +NI DEFT+VSILTA A+L AL+LGEWIK YIDKN++K D F GNALIDMY C
Sbjct: 341 REMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNC 400
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+VEKA +DK SWT +I GLAI+G G++ALDMFSQML+ASI PDEV +GVL
Sbjct: 401 GNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVL 460
Query: 173 SACTHN 178
ACTH+
Sbjct: 461 CACTHS 466
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 100/214 (46%), Gaps = 39/214 (18%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ +V A++ Y G+V +AR FD+ + D V W MI GY R +F E++ LF E
Sbjct: 151 SSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDE 210
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M+ ++ T+VS+L+A + L+ L++G+ + Y+ K++ NALIDMY C D
Sbjct: 211 MERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGD 270
Query: 123 VEKA---------------------------------------QKDKFSWTTMIVGLAIS 143
++ A ++D SWT MI G
Sbjct: 271 MDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQV 330
Query: 144 GNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+ L +F +M A+IKPDE V +L+AC H
Sbjct: 331 NRFKEVLSLFREMQAANIKPDEFTMVSILTACAH 364
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 8/165 (4%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G ++ AR FD MP ++ +W MI GY RV A++++ EM +M DE+T +L
Sbjct: 67 GDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLL 126
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKF 131
A+ G + +I K +++F NALI +Y + +V A + D
Sbjct: 127 KRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVV 186
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+W MI G S D+++ +F +M R + P + V VLSAC+
Sbjct: 187 TWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACS 231
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 27/172 (15%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRF-REALTLFQEM 63
D A++ Y N G V+ A + F+ MP RD + WTA+I G L +N + EAL +F +M
Sbjct: 386 DSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFG-LAINGYGEEALDMFSQM 444
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
++I DE T + +L A + +D G K + + ++ I
Sbjct: 445 LKASITPDEVTCIGVLCACTHSGMVDKG---KKFFARMTTQHGI---------------- 485
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ + + M+ L +G+ +A ++ M +KP+ + + +L AC
Sbjct: 486 ---EPNVAHYGCMVDLLGRAGHLKEAHEVIKNM---PVKPNSIVWGSLLGAC 531
>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g15930
gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 107/186 (57%), Positives = 139/186 (74%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK +DVISWT+IV Y+ RG + +AR FDQMP RD + WT MIDGYLR F E+L +F
Sbjct: 297 MKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIF 356
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ++ ++ DEFT+VS+LTA A+L +L++GEWIKTYIDKNK+KND+ GNALIDMY C
Sbjct: 357 REMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKC 416
Query: 121 ADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
EKAQK DKF+WT M+VGLA +G G +A+ +F QM SI+PD++ Y+GVL
Sbjct: 417 GCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVL 476
Query: 173 SACTHN 178
SAC H+
Sbjct: 477 SACNHS 482
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 39/206 (18%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+V Y G +D+AR FD+ + D W MI GY R+ + E++ L EM+ + +
Sbjct: 175 ALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSP 234
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD-------- 122
T++ +L+A + ++ DL + + Y+ + K + + NAL++ Y C +
Sbjct: 235 TSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIF 294
Query: 123 ------------------VEKAQ-------------KDKFSWTTMIVGLAISGNGDKALD 151
VE+ +D+ SWT MI G +G +++L+
Sbjct: 295 RSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLE 354
Query: 152 MFSQMLRASIKPDEVAYVGVLSACTH 177
+F +M A + PDE V VL+AC H
Sbjct: 355 IFREMQSAGMIPDEFTMVSVLTACAH 380
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 84/166 (50%), Gaps = 9/166 (5%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G V A + F ++PE D V+W MI G+ +V+ E + L+ M + D T +L
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141
Query: 80 TA-RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDK 130
+ + AL G+ + ++ K + ++++ NAL+ MY +C ++ A ++D
Sbjct: 142 NGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDV 201
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
FSW MI G ++++++ +M R + P V + VLSAC+
Sbjct: 202 FSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACS 247
>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
Length = 695
Score = 226 bits (575), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 107/186 (57%), Positives = 139/186 (74%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK +DVISWT+IV Y+ RG + +AR FDQMP RD + WT MIDGYLR F E+L +F
Sbjct: 297 MKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIF 356
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ++ ++ DEFT+VS+LTA A+L +L++GEWIKTYIDKNK+KND+ GNALIDMY C
Sbjct: 357 REMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKC 416
Query: 121 ADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
EKAQK DKF+WT M+VGLA +G G +A+ +F QM SI+PD++ Y+GVL
Sbjct: 417 GCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVL 476
Query: 173 SACTHN 178
SAC H+
Sbjct: 477 SACNHS 482
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 39/206 (18%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+V Y G +D+AR FD+ + D W MI GY R+ + E++ L EM+ + +
Sbjct: 175 ALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSP 234
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD-------- 122
T++ +L+A + ++ DL + + Y+ + K + + NAL++ Y C +
Sbjct: 235 TSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIF 294
Query: 123 ------------------VEKAQ-------------KDKFSWTTMIVGLAISGNGDKALD 151
VE+ +D+ SWT MI G +G +++L+
Sbjct: 295 RSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLE 354
Query: 152 MFSQMLRASIKPDEVAYVGVLSACTH 177
+F +M A + PDE V VL+AC H
Sbjct: 355 IFREMQSAGMIPDEFTMVSVLTACAH 380
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 84/166 (50%), Gaps = 9/166 (5%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G V A + F ++PE D V+W MI G+ +V+ E + L+ M + D T +L
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141
Query: 80 TA-RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDK 130
+ + AL G+ + ++ K + ++++ NAL+ MY +C ++ A ++D
Sbjct: 142 NGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDV 201
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
FSW MI G ++++++ +M R + P V + VLSAC+
Sbjct: 202 FSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACS 247
>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
Length = 627
Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 97/185 (52%), Positives = 135/185 (72%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ + V+SWT+++S GQVD AR FD+MPERD V WTAMIDGY+ RFREAL +F
Sbjct: 184 MQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMF 243
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ SN+ DEFT+VS++TA A L AL++GEW++ Y+ + +K D F GNALIDMY C
Sbjct: 244 REMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKC 303
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E+A +DKF+WT +I+GLA++G ++A++MF +M+R S PDEV ++GVL
Sbjct: 304 GSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVL 363
Query: 173 SACTH 177
+ACTH
Sbjct: 364 TACTH 368
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 64/128 (50%), Gaps = 9/128 (7%)
Query: 38 VLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARA-NLRALDLGEWIKT 96
V W A+I G+ R RF E+ F +M + T VS+L+A R + LG +
Sbjct: 88 VAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHG 147
Query: 97 YIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTMIVGLAISGNGDK 148
+ + V D+ NAL+DMY CAD+ A K SWT+++ GLA G D+
Sbjct: 148 RVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDE 207
Query: 149 ALDMFSQM 156
A D+F +M
Sbjct: 208 ARDLFDRM 215
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 12/154 (7%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFQEM 63
D A++ Y G ++ A F M RD WTA+I G L VN + E A+ +F M
Sbjct: 289 DAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILG-LAVNGYEEEAIEMFHRM 347
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ DE T + +LTA + +D G E+ + I+ + ++ +ID+
Sbjct: 348 IRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGK 407
Query: 123 VEKA---------QKDKFSWTTMIVGLAISGNGD 147
+ +A + W T++ + GN +
Sbjct: 408 ITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSE 441
>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
Length = 649
Score = 211 bits (538), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 95/185 (51%), Positives = 135/185 (72%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ + V+SWT+++S G+VD AR F +MPERD V WTAMIDGY++ RFREAL +F
Sbjct: 206 MQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMF 265
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ SN+ DEFT+VS++TA A L AL++GEW++ Y+ + +K D F GNALIDMY C
Sbjct: 266 REMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKC 325
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E+A +DKF+WT +I+GLA++G G++A++MF +M+ S PDEV ++GVL
Sbjct: 326 GSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVL 385
Query: 173 SACTH 177
+ACTH
Sbjct: 386 TACTH 390
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 78/183 (42%), Gaps = 41/183 (22%)
Query: 34 ERDY-VLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRA-LDLG 91
ERD V+W A+I G+ R RF EA F +M + T VS+L+A + LG
Sbjct: 105 ERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLG 164
Query: 92 EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA------------------------- 126
+ + + V D+ NAL+DMY CAD+E A
Sbjct: 165 MQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRL 224
Query: 127 --------------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++D SWT MI G + +AL+MF +M +++ DE V V+
Sbjct: 225 GRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVI 284
Query: 173 SAC 175
+AC
Sbjct: 285 TAC 287
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 12/154 (7%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRF-REALTLFQEM 63
D A++ Y G ++ A F M RD WTA+I G L VN + EA+ +F M
Sbjct: 311 DAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILG-LAVNGYGEEAIEMFHRM 369
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ DE T + +LTA + +D G E+ + + + ++ +ID++
Sbjct: 370 IGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGK 429
Query: 123 VEKA---------QKDKFSWTTMIVGLAISGNGD 147
+ +A + W T++ + GN +
Sbjct: 430 ITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSE 463
>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
Length = 665
Score = 209 bits (533), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 96/185 (51%), Positives = 132/185 (71%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ + + SWT+++S + GQVD AR FD MPERD + WTAMIDGY++V RFR+AL F
Sbjct: 222 MQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETF 281
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ MQ + DEFT+VS++TA A L AL+ GEW + Y+ + +K D+F GNALIDMY C
Sbjct: 282 RYMQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKC 341
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E+A +DKF+WT +I+GLA++G G++A+DMF +MLRA PDEV +VGVL
Sbjct: 342 GSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVL 401
Query: 173 SACTH 177
+ACTH
Sbjct: 402 TACTH 406
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 65/127 (51%), Gaps = 8/127 (6%)
Query: 38 VLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTY 97
V+W A+I G+ R RF + F +M ++ M T VS+L+A + L LG +
Sbjct: 127 VMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKR 186
Query: 98 IDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKA 149
+ ++ V D NAL+DMY C D++ A + SWT++I GL SG D+A
Sbjct: 187 VLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRA 246
Query: 150 LDMFSQM 156
D+F M
Sbjct: 247 RDLFDHM 253
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 10/153 (6%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV A++ Y G ++ A F M RD WTA+I G R EA+ +F M
Sbjct: 327 DVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRML 386
Query: 65 TSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ DE T V +LTA + +D G E+ + + + + LID+ +
Sbjct: 387 RALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYGCLIDVLGRAGKL 446
Query: 124 EKA---------QKDKFSWTTMIVGLAISGNGD 147
++A + + W T++ + GN +
Sbjct: 447 KEALDTIDKMPMKPNSTIWGTLLASCRVYGNSE 479
>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Brachypodium distachyon]
Length = 552
Score = 208 bits (530), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 93/185 (50%), Positives = 136/185 (73%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ ++ +SWT+++S ++ GQVD AR FD MPERD V WTAMIDGY++ +FREAL +F
Sbjct: 184 MEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMF 243
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ S + DEFT+VS++TA A L AL+ GEW + Y+ ++ +K D F GNAL+DMY C
Sbjct: 244 REMQFSKVRADEFTMVSVVTACAQLGALETGEWARIYMSRHGIKMDTFVGNALVDMYSKC 303
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+++A +DKF+WT +I+GLA++G+G++A++MF +MLR PDEV ++GVL
Sbjct: 304 GSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRMLRVFEAPDEVTFIGVL 363
Query: 173 SACTH 177
+ACTH
Sbjct: 364 TACTH 368
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 93/210 (44%), Gaps = 42/210 (20%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERD---YVLWTAMIDGYLRVNRFREALTLFQEMQTS 66
+++V Y RG +AR D P R V+W A+I G+ R +FR + F +M +
Sbjct: 58 SSLVLMYAARGDGAVARTLLDAWPARGGDTPVVWNALISGHRRSRQFRLSCCSFVDMVRT 117
Query: 67 NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126
++ T +++L+A + + LG + + + V D+ GNALIDMY C++++ A
Sbjct: 118 GVVPTPVTYITVLSACGKDKYIWLGMQVHKCVVASGVLPDLKVGNALIDMYAECSEMDAA 177
Query: 127 ---------------------------------------QKDKFSWTTMIVGLAISGNGD 147
++D SWT MI G +G
Sbjct: 178 WELFEGMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFR 237
Query: 148 KALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+AL+MF +M + ++ DE V V++AC
Sbjct: 238 EALEMFREMQFSKVRADEFTMVSVVTACAQ 267
Score = 42.4 bits (98), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 61/153 (39%), Gaps = 10/153 (6%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D A+V Y G + A F +M RD WTA+I G EA+ +F M
Sbjct: 289 DTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRML 348
Query: 65 TSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
DE T + +LTA + +D G ++ + + ++ LID+ +
Sbjct: 349 RVFEAPDEVTFIGVLTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHFGCLIDLLGRAGKL 408
Query: 124 EKA---------QKDKFSWTTMIVGLAISGNGD 147
++A + + W T++ + GN +
Sbjct: 409 KEALETIGNMPMRPNSAIWGTLLAACRVHGNSE 441
>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 650
Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 106/187 (56%), Positives = 129/187 (68%), Gaps = 18/187 (9%)
Query: 7 ISWTAIVSRYINRG----------QVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREA 56
+ W + +YIN G ++D A+ FD M RD V WTAMIDGYLR+N F A
Sbjct: 207 LEWGKHIFKYINGGIVEHMFAACGEMDEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGA 266
Query: 57 LTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116
L LF+EMQ SN+ DEFT+VSIL A A L AL+LGEW+KT IDKN KND F GNAL+DM
Sbjct: 267 LALFREMQMSNVKPDEFTMVSILIACALLGALELGEWVKTCIDKNSNKNDSFVGNALVDM 326
Query: 117 YCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
Y C +V KA QKDKF+WTTMIVGLAI+G+G++AL MFS M+ AS+ PDE+ Y
Sbjct: 327 YFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEEALAMFSNMIEASVTPDEITY 386
Query: 169 VGVLSAC 175
+GVL AC
Sbjct: 387 IGVLCAC 393
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 35/164 (21%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G VD+A + FD + V W M+ GY RV +F+ + L +L
Sbjct: 156 GIVDLAHKVFDMGDACEVVTWNIMLSGYNRVKQFKISKMLL-----------------VL 198
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKF 131
+A + L+ L+ G+ I YI+ G + M+ C ++++AQ +D
Sbjct: 199 SACSKLKDLEWGKHIFKYIN----------GGIVEHMFAACGEMDEAQGVFDNMKTRDVV 248
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
SWT MI G + AL +F +M +++KPDE V +L AC
Sbjct: 249 SWTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSILIAC 292
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G ++ A Q FD +P +W MI GY +++ ++++ M TSNI D FT L
Sbjct: 55 GNMNYAHQVFDTIPHPSMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSL 114
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKF 131
AL G+ + + K+ +++F A I M+ +C V+ A K +
Sbjct: 115 KGFTRDMALQHGKELLNHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVV 174
Query: 132 SWTTMIVG 139
+W M+ G
Sbjct: 175 TWNIMLSG 182
>gi|297743485|emb|CBI36352.3| unnamed protein product [Vitis vinifera]
Length = 605
Score = 206 bits (524), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 100/151 (66%), Positives = 120/151 (79%), Gaps = 8/151 (5%)
Query: 24 IARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARA 83
+ R FD+MPERD+V WTAMIDGYL+VNRF+E L+LF+EMQ +NI DEFT+VSILTA A
Sbjct: 242 VHRNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACA 301
Query: 84 NLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTT 135
+L AL+LGEWIK YIDKN++K D F GNALIDMY C +VEKA +DK SWT
Sbjct: 302 HLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTA 361
Query: 136 MIVGLAISGNGDKALDMFSQMLRASIKPDEV 166
+I GLAI+G G++ALDMFSQML+ASI PDEV
Sbjct: 362 VIFGLAINGYGEEALDMFSQMLKASITPDEV 392
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 25/176 (14%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ +V A++ Y G+V +AR FD+ + D V W MI GY R +F E++ LF E
Sbjct: 151 SSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDE 210
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWI-KTYIDKNKVKNDIFAGNALIDMYCICA 121
M+ ++ T+VS+L+A + L+ L++G+ + + Y DK
Sbjct: 211 MERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRNYFDK--------------------- 249
Query: 122 DVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
++D SWT MI G + L +F +M A+IKPDE V +L+AC H
Sbjct: 250 ---MPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAH 302
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 8/165 (4%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G ++ AR FD MP ++ +W MI GY RV A++++ EM +M DE+T +L
Sbjct: 67 GDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLL 126
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKF 131
A+ G + +I K +++F NALI +Y + +V A + D
Sbjct: 127 KRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVV 186
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+W MI G S D+++ +F +M R + P + V VLSAC+
Sbjct: 187 TWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACS 231
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRF-REALTLFQEMQTSNIM 69
A++ Y N G V+ A + F+ MP RD + WTA+I G L +N + EAL +F +M ++I
Sbjct: 330 ALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFG-LAINGYGEEALDMFSQMLKASIT 388
Query: 70 GDE 72
DE
Sbjct: 389 PDE 391
>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Vitis vinifera]
Length = 662
Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 89/186 (47%), Positives = 130/186 (69%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K VI WT++VS Y+N GQ+D AR+ F++ P RD VLWTAMI+GY++ NRF +A+ LF
Sbjct: 294 MPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALF 353
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ + D FT+V++LT A L L+ G+WI YID+NK+ D G ALI+MY C
Sbjct: 354 REMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAKC 413
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+EK+ +KD SWT++I GLA++G KAL++F++M++ +KPD++ ++GVL
Sbjct: 414 GFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVL 473
Query: 173 SACTHN 178
SAC+H
Sbjct: 474 SACSHG 479
Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 90/160 (56%), Gaps = 10/160 (6%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM- 63
D +++ Y G+V RQ F++MP+RD V W +I GY++ R+ +A+ +F+ M
Sbjct: 166 DTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQ 225
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
Q S++ +E T+VS L+A L+ L+LG+ I Y+ + ++ I GNAL+DMYC C +
Sbjct: 226 QQSSLRPNEATVVSTLSACIALKMLELGKEIHRYV-REQLGFTIKIGNALVDMYCKCGHL 284
Query: 124 EKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQ 155
A+ K WT+M+ G G D+A ++F +
Sbjct: 285 SIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFER 324
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 81/165 (49%), Gaps = 9/165 (5%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G + A + F+ + ++ +I + + FR+A+ LF++++ + D FT +
Sbjct: 80 GNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVF 139
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKF 131
A L + GE + ++ K+ ++ D + N+L+DMY V E Q+D
Sbjct: 140 KAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVV 199
Query: 132 SWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGVLSAC 175
SW +I G + A+D+F +M ++S++P+E V LSAC
Sbjct: 200 SWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSAC 244
>gi|224126329|ref|XP_002329527.1| predicted protein [Populus trichocarpa]
gi|222870236|gb|EEF07367.1| predicted protein [Populus trichocarpa]
Length = 377
Score = 185 bits (470), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 86/186 (46%), Positives = 126/186 (67%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +K+VI WT++VS Y+N G++D AR+ F++ P +D VLWTAMI+GY++ N F EA+ LF
Sbjct: 18 MPHKNVICWTSMVSGYVNYGELDKARELFERSPVKDVVLWTAMINGYVQFNHFDEAVALF 77
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
QEMQ + D+F +V++LT A + AL+ G WI YID+ + D G +LI+MY C
Sbjct: 78 QEMQIQRVKPDKFVLVALLTGCAQMGALEQGTWIHGYIDEKGIPVDAVVGTSLIEMYSKC 137
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+EKA +KD +WT++I GLA++G KAL++FS+M + PDEV ++GVL
Sbjct: 138 GCIEKALRIFCGLREKDTATWTSIICGLAMNGKTSKALELFSKMKQVEAIPDEVTFIGVL 197
Query: 173 SACTHN 178
SAC+H
Sbjct: 198 SACSHG 203
>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 683
Score = 185 bits (470), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 86/186 (46%), Positives = 128/186 (68%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +K+VI WT +VS Y N G+++ AR+ F+ P RD V+WTAMI+GY++ NRF EA+ LF
Sbjct: 299 MPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALF 358
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ + D+F +VS+LT A A++ G+WI +ID+N++ D G ALI+MY C
Sbjct: 359 REMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDENRIPIDAVVGTALIEMYAKC 418
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+EKA KD SWT++I GLA++G KAL++FS+M +A ++PD++ ++GVL
Sbjct: 419 GFIEKALEIFYGLRVKDTASWTSIICGLAMNGKTSKALELFSKMKQAGVRPDDITFIGVL 478
Query: 173 SACTHN 178
SAC+H
Sbjct: 479 SACSHG 484
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 99/208 (47%), Gaps = 41/208 (19%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ-TSNIM 69
+++ Y D+ + FD+MP+RD + W MI GY++ RF +A+ +F MQ S +M
Sbjct: 177 SLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGLM 236
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV------ 123
DE T+VS L+A L+ L+LG+ I Y+ N VK GNAL+DMYC C +
Sbjct: 237 PDEATVVSTLSACTALKRLELGKKIHHYVRDN-VKFTPIIGNALLDMYCKCGCLSIARAV 295
Query: 124 --EKAQKDKFSWTTMIVGLAISG------------------------NG-------DKAL 150
E K+ WTTM+ G A G NG D+A+
Sbjct: 296 FEEMPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAV 355
Query: 151 DMFSQMLRASIKPDEVAYVGVLSACTHN 178
+F +M +KPD+ V +L+ C
Sbjct: 356 ALFREMQIRKVKPDKFIVVSLLTGCAQT 383
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 86/185 (46%), Gaps = 11/185 (5%)
Query: 3 NKDVISWTAIVSRYIN--RGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
++D++S +++ + G ++ A + F + +++ +I + + ++ L LF
Sbjct: 66 HQDIVSLNKLMAFCTDPFNGNLNYAEKMFKYIRYPCLLIYNLIIKAFAKKGNYKRTLVLF 125
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+++ + D FT + A L + E ++ + K ++ D + N+LIDMY
Sbjct: 126 SKLREDGLWPDNFTYPFVFKAIGYLGEVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQL 185
Query: 121 A--DV------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGV 171
A DV E +D SW MI G + A+++F +M S + PDE V
Sbjct: 186 ALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVST 245
Query: 172 LSACT 176
LSACT
Sbjct: 246 LSACT 250
>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like, partial [Cucumis sativus]
Length = 735
Score = 182 bits (463), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 87/185 (47%), Positives = 126/185 (68%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+VI WT+++S YIN G + AR FD+ P RD VLWTAMI+GY++ + F +A+ LF
Sbjct: 359 MSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALF 418
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ I D+FT+V++LT A L AL+ G+WI Y+D+N++ D+ G ALI+MY C
Sbjct: 419 REMQIQKIKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKC 478
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
V+K+ KD SWT++I GLA++G +AL +FS+M R KPD++ ++GVL
Sbjct: 479 GCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVL 538
Query: 173 SACTH 177
SAC+H
Sbjct: 539 SACSH 543
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 98/209 (46%), Gaps = 41/209 (19%)
Query: 9 WTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-QTSN 67
+ +++ Y V+ A++ FD+M RD V W MI GY+R RF +A+ F+EM Q N
Sbjct: 235 YNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGN 294
Query: 68 IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY--CICADV-- 123
DE T+VS L+A L+ L+LG+ I Y+ K ++ NAL+DMY C C ++
Sbjct: 295 EKPDEATVVSTLSACTALKNLELGDEIHNYVRK-ELGFTTRIDNALLDMYAKCGCLNIAR 353
Query: 124 ----EKAQKDKFSWTTMIVGLAISG------------------------NG-------DK 148
E + K+ WT+MI G G NG D
Sbjct: 354 NIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDD 413
Query: 149 ALDMFSQMLRASIKPDEVAYVGVLSACTH 177
A+ +F +M IKPD+ V +L+ C
Sbjct: 414 AVALFREMQIQKIKPDKFTVVTLLTGCAQ 442
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 9/166 (5%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G + A + F+ + + ++ M+ Y + R+ L LFQ+++ + D FT +L
Sbjct: 145 GNLRYAEKIFNYVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVL 204
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKF 131
A LR + GE ++ +I K + D + N+LIDMY ++VE A+K D
Sbjct: 205 KAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSV 264
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGVLSACT 176
SW MI G + A++ F +M + + KPDE V LSACT
Sbjct: 265 SWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACT 310
>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Cucumis sativus]
Length = 781
Score = 182 bits (461), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 86/185 (46%), Positives = 126/185 (68%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+VI WT+++S YIN G + AR FD+ P RD VLWTAMI+GY++ + F +A+ LF
Sbjct: 405 MSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALF 464
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ + D+FT+V++LT A L AL+ G+WI Y+D+N++ D+ G ALI+MY C
Sbjct: 465 REMQIQRVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKC 524
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
V+K+ KD SWT++I GLA++G +AL +FS+M R KPD++ ++GVL
Sbjct: 525 GCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVL 584
Query: 173 SACTH 177
SAC+H
Sbjct: 585 SACSH 589
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 98/209 (46%), Gaps = 41/209 (19%)
Query: 9 WTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-QTSN 67
+ +++ Y V+ A++ FD+M RD V W MI GY+R RF +A+ F+EM Q N
Sbjct: 281 YNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGN 340
Query: 68 IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY--CICADV-- 123
DE T+VS L+A L+ L+LG+ I Y+ K ++ NAL+DMY C C ++
Sbjct: 341 EKPDEATVVSTLSACTALKNLELGDEIHNYVRK-ELGFTTRIDNALLDMYAKCGCLNIAR 399
Query: 124 ----EKAQKDKFSWTTMIVGLAISG------------------------NG-------DK 148
E + K+ WT+MI G G NG D
Sbjct: 400 NIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDD 459
Query: 149 ALDMFSQMLRASIKPDEVAYVGVLSACTH 177
A+ +F +M +KPD+ V +L+ C
Sbjct: 460 AVALFREMQIQRVKPDKFTVVTLLTGCAQ 488
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 9/166 (5%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G + A + F+ + + ++ M+ Y + R+ L LFQ+++ + D FT +L
Sbjct: 191 GNLRYAEKIFNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVL 250
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKF 131
A LR + GE ++ +I K + D + N+LIDMY ++VE A+K D
Sbjct: 251 KAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSV 310
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGVLSACT 176
SW MI G + A++ F +M + + KPDE V LSACT
Sbjct: 311 SWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACT 356
>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 614
Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/185 (45%), Positives = 122/185 (65%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V WT++V+ Y+ GQ+D AR F++ P RD VLWTAMI+GY++ NRF E + LF
Sbjct: 270 MTVKNVNCWTSMVTGYVICGQLDQARNLFERSPSRDIVLWTAMINGYVQFNRFEETIALF 329
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EMQ + D+F +V++LT A AL+ G+WI YID+N++K D G ALI+MY C
Sbjct: 330 GEMQIRGVKPDKFIVVTLLTGCAQSGALEQGKWIHNYIDENRIKVDAVVGTALIEMYAKC 389
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+EK+ +KD SWT++I GLA++G +AL++F M +KPD++ +V VL
Sbjct: 390 GCIEKSFEIFNGLKEKDTTSWTSIICGLAMNGKPSEALELFKAMQTCGLKPDDITFVAVL 449
Query: 173 SACTH 177
SAC+H
Sbjct: 450 SACSH 454
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 86/149 (57%), Gaps = 10/149 (6%)
Query: 16 YINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT-SNIMGDEFT 74
Y G V+ Q F++MP+RD V W MI GY+R RF EA+ +++ M T SN +E T
Sbjct: 153 YAELGLVEGFTQVFEEMPDRDAVSWNIMISGYVRCKRFEEAVDVYRRMWTESNEKPNEAT 212
Query: 75 IVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ------- 127
+VS L+A A LR L+LG+ I YI +++ GNAL+DMYC C V A+
Sbjct: 213 VVSTLSACAVLRNLELGKEIHDYI-ASELDLTTIMGNALLDMYCKCGHVSVAREIFDAMT 271
Query: 128 -KDKFSWTTMIVGLAISGNGDKALDMFSQ 155
K+ WT+M+ G I G D+A ++F +
Sbjct: 272 VKNVNCWTSMVTGYVICGQLDQARNLFER 300
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 79/165 (47%), Gaps = 9/165 (5%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G + A + F+ + + ++ MI +++ FR A++LFQ+++ + D +T +L
Sbjct: 56 GDFNYANRIFNYIHDPSLFIYNLMIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVL 115
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK--------AQKDKF 131
+ + GE + ++ K ++ D + N+ +DMY VE +D
Sbjct: 116 KGIGCIGEVREGEKVHAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAV 175
Query: 132 SWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGVLSAC 175
SW MI G ++A+D++ +M ++ KP+E V LSAC
Sbjct: 176 SWNIMISGYVRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSAC 220
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + TA++ Y G ++ + + F+ + E+D WT++I G + EAL LF+ MQ
Sbjct: 375 DAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGLAMNGKPSEALELFKAMQ 434
Query: 65 TSNIMGDEFTIVSILTARANLRALDLG 91
T + D+ T V++L+A ++ ++ G
Sbjct: 435 TCGLKPDDITFVAVLSACSHAGLVEEG 461
>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
Length = 639
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/186 (45%), Positives = 121/186 (65%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NK+VI WT++VS Y + G +D AR+ F++ P RD VLWTAMI+GY++ N F EAL LF
Sbjct: 276 MGNKNVICWTSMVSGYASNGSLDEARELFERSPVRDIVLWTAMINGYVQFNLFDEALKLF 335
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++MQ + D F +V++L A AL+ G+W+ YI +N + D G AL+D+Y C
Sbjct: 336 RKMQIQRLRPDNFILVTLLKGCAQTGALEQGKWLHGYIHENSITLDRVVGTALVDVYAKC 395
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VEKA ++D SWT++I GLA++G KALD FSQM A +PD++ ++GVL
Sbjct: 396 GCVEKALEVFYEMKERDTASWTSVIYGLAVNGMTSKALDFFSQMEEAGFRPDDITFIGVL 455
Query: 173 SACTHN 178
+AC H
Sbjct: 456 TACNHG 461
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 97/160 (60%), Gaps = 10/160 (6%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM- 63
D +++ Y G++++A++ FD++PERD V W +I Y+ +F +A+ +F+ M
Sbjct: 148 DACVCNSVMGMYGALGKMEVAKKVFDEIPERDVVSWNVLISSYVGHRKFEDAIAVFRRMR 207
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ SN+ DE T+VS L+A + LR ++GE I Y+D +++ GNAL+DMYC C V
Sbjct: 208 RESNLKADEATVVSTLSACSVLRNQEVGEEIHRYVDA-ELEMTTKIGNALLDMYCKCGCV 266
Query: 124 EKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQ 155
+KA+ K+ WT+M+ G A +G+ D+A ++F +
Sbjct: 267 DKARAIFDEMGNKNVICWTSMVSGYASNGSLDEARELFER 306
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 11/183 (6%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N D ++ + +RG + A + + V++ MI + FR+ L LF E
Sbjct: 47 NMDTLTKIVLFCTDPSRGSIRYAERVLGFVQSPCLVMYNLMIKAVAKDENFRKVLVLFSE 106
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
++ + D FT+ + A L + GE + Y+ K+ D N+++ MY
Sbjct: 107 LRKQGLNPDNFTLPPVFKAMGCLGKVVEGEKVHGYVVKSGF--DACVCNSVMGMYGALGK 164
Query: 123 VEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLS 173
+E A+K D SW +I + A+ +F +M R S +K DE V LS
Sbjct: 165 MEVAKKVFDEIPERDVVSWNVLISSYVGHRKFEDAIAVFRRMRRESNLKADEATVVSTLS 224
Query: 174 ACT 176
AC+
Sbjct: 225 ACS 227
>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 81/185 (43%), Positives = 122/185 (65%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ ++++SW A+V + G + AR+ FD MP+RD + WT+MI GY + ++F +A+ LF
Sbjct: 278 MRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLF 337
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
QEM + + D+ T+ S+L+A A+L LD+G + YI ++ V+ DI+ GN+LIDMYC C
Sbjct: 338 QEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKC 397
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VEKA KD SWT++I GLA++G + ALD+FSQMLR ++P +VG+L
Sbjct: 398 GMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGIL 457
Query: 173 SACTH 177
AC H
Sbjct: 458 LACAH 462
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 99/206 (48%), Gaps = 39/206 (18%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y GQ+ A++ FD M +RD V W +I GY + N+++E L LF M +NI
Sbjct: 156 ALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKA 215
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--- 127
D T+V I+ A ++L + + + YI +N ++ D++ GN LIDMY + E AQ
Sbjct: 216 DAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVF 275
Query: 128 ------------------------------------KDKFSWTTMIVGLAISGNGDKALD 151
+D SWT+MI G + + A+
Sbjct: 276 DRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVK 335
Query: 152 MFSQMLRASIKPDEVAYVGVLSACTH 177
+F +M+ A +KPD+V VLSAC H
Sbjct: 336 LFQEMMAAKVKPDKVTVASVLSACAH 361
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 8/161 (4%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A F+Q+ V+W MI G + + EA+ ++ M I G+ T++ + A A
Sbjct: 69 AHLVFNQIECPTLVVWNHMIRGLSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACAR 128
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTM 136
+ + G I + K ++ +F NALI MY +C + AQK D SW T+
Sbjct: 129 VSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTL 188
Query: 137 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
I G + + L +F M A+IK D V V ++ AC+H
Sbjct: 189 ICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSH 229
>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1288
Score = 175 bits (444), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 82/185 (44%), Positives = 120/185 (64%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++++++SW A++ Y G + AR+ FD MP RD + WT+MI Y + +F +A+ LF
Sbjct: 957 MRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLF 1016
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
QEM + + DE T+ S+L+A A++ ALD+GE + YI K V DI+ GNALIDMYC C
Sbjct: 1017 QEMMVTKVKPDEITVASVLSACAHIGALDVGEAVHEYIRKYDVNADIYVGNALIDMYCKC 1076
Query: 121 ADVEK--------AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VEK ++D SWT++I GLA++G+ D AL++FS MLR ++P +VGVL
Sbjct: 1077 GAVEKGLSVFEEMGKRDSVSWTSVIAGLAVNGSADSALNLFSLMLREGVRPTHGTFVGVL 1136
Query: 173 SACTH 177
AC H
Sbjct: 1137 LACAH 1141
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 106/219 (48%), Gaps = 49/219 (22%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ D+ A++ Y ++ AR+ FD+M ERD V W ++I GY R R+ E L +F+E
Sbjct: 827 DSDLFVSNALIHGYAGFCELGFARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEE 886
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEW-----IKTYIDKNKVKNDIFAGNALIDMY 117
M+ +++ GD T+V ++ A LGEW + YI++NKV+ D++ GN LIDMY
Sbjct: 887 MRMADVKGDAVTMVKVVLA-----CTVLGEWGVVDAMIEYIEENKVEVDVYLGNTLIDMY 941
Query: 118 CICADVEKA---------------------------------------QKDKFSWTTMIV 138
+ V+ A +D SWT+MI
Sbjct: 942 GRRSMVDLARRVFDRMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMIS 1001
Query: 139 GLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+ +G KA+ +F +M+ +KPDE+ VLSAC H
Sbjct: 1002 SYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVLSACAH 1040
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 9/160 (5%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A + F Q+P W MI G+ + N+ EA+ + M + + G+ T +L A A
Sbjct: 749 ANELFRQIPRPTLSHWNIMIRGWSQTNQPIEAIRNYNLMYSQALFGNNLTYPFLLKACAR 808
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKFSWTTM 136
+ + + + K +D+F NALI Y ++ E +++D SW ++
Sbjct: 809 ISNVSCTT-VHARVLKLGFDSDLFVSNALIHGYAGFCELGFARKVFDEMSERDLVSWNSL 867
Query: 137 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
I G + L +F +M A +K D V V V+ ACT
Sbjct: 868 ICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACT 907
Score = 42.7 bits (99), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 40/89 (44%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N D+ A++ Y G V+ F++M +RD V WT++I G AL LF
Sbjct: 1060 NADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSVSWTSVIAGLAVNGSADSALNLFSL 1119
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLG 91
M + T V +L A A+ +D G
Sbjct: 1120 MLREGVRPTHGTFVGVLLACAHAGVVDKG 1148
>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 175 bits (444), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 85/185 (45%), Positives = 119/185 (64%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NK ++SWT +V Y G +D+A + FD+MP++D V W AMI GY+ NR +EAL LF
Sbjct: 241 MTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALF 300
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EMQ NI DE T+VS L+A + L ALD+G WI YI+K+++ ++ G ALIDMY C
Sbjct: 301 NEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKC 360
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ KA ++ +WT +I GLA+ GN A+ FS+M+ S+ PDEV ++G+L
Sbjct: 361 GKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLL 420
Query: 173 SACTH 177
SAC H
Sbjct: 421 SACCH 425
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 74/174 (42%), Gaps = 33/174 (18%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ D+ A++ ++ G +D AR+ FD+ RD V W +MI+GY A LF
Sbjct: 183 DSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGY--CGNLESARKLFDS 240
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M T+VS W + +A + L+DM D
Sbjct: 241 MTNK-------TMVS---------------WTTMVVG--------YAQSGLLDMAWKLFD 270
Query: 123 VEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
E KD W MI G + G +AL +F++M +I PDEV V LSAC+
Sbjct: 271 -EMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACS 323
>gi|125555946|gb|EAZ01552.1| hypothetical protein OsI_23585 [Oryza sativa Indica Group]
Length = 530
Score = 175 bits (444), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 86/186 (46%), Positives = 119/186 (63%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ISWT +VS Y GQ+D AR F+Q E+D +LWTAMI+ ++ F EALTLF
Sbjct: 210 MPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINACVQHGCFEEALTLF 269
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++MQ + D FT+V++LT ANL ALD GEWI Y ++ K+K D G ALIDMY C
Sbjct: 270 RDMQMQRVEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKMKIDAVLGTALIDMYSKC 329
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+EK+ +D +WT +I GLA +G +AL++F M R+ +KPD V ++GVL
Sbjct: 330 GHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDMQRSKVKPDGVTFIGVL 389
Query: 173 SACTHN 178
SAC H
Sbjct: 390 SACCHG 395
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 99/182 (54%), Gaps = 13/182 (7%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + ++++ Y G+VDIAR+ FD+MP R VLW M+ Y+R R+ A+ L ++M+
Sbjct: 83 DAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGRYSAAVALSEQME 142
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
S + D T+V+ +TA + R L LG I Y+D N ++ NAL+DMY +E
Sbjct: 143 RSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMD-NVFGFNLPVANALLDMYTKNDCLE 201
Query: 125 KAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+A K + SWT ++ G ++G DKA +F+Q + D + + +++AC
Sbjct: 202 EAVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQ----CKEKDLILWTAMINACV 257
Query: 177 HN 178
+
Sbjct: 258 QH 259
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + TA++ Y G ++ + + F +M RD WTA+I G + AL LFQ+MQ
Sbjct: 315 DAVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDMQ 374
Query: 65 TSNIMGDEFTIVSILTARANLRALDLG 91
S + D T + +L+A + +D G
Sbjct: 375 RSKVKPDGVTFIGVLSACCHGGLVDEG 401
>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 175 bits (443), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 85/186 (45%), Positives = 119/186 (63%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NK ++SWT +V Y G +D+A + FD+MP++D V W AMI GY+ NR +EAL LF
Sbjct: 269 MTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALF 328
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EMQ NI DE T+VS L+A + L ALD+G WI YI+K+++ ++ G ALIDMY C
Sbjct: 329 NEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKC 388
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ KA ++ +WT +I GLA+ GN A+ FS+M+ S+ PDEV ++G+L
Sbjct: 389 GKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLL 448
Query: 173 SACTHN 178
SAC H
Sbjct: 449 SACCHG 454
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 107/214 (50%), Gaps = 39/214 (18%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ D+ A++ ++ G +D AR+ FD+ RD V W +MI+GY+R EAL ++E
Sbjct: 139 DSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYRE 198
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M+ I DE T++ ++++ A L LDLG YI++N +K + NAL+DMY C +
Sbjct: 199 MKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGN 258
Query: 123 VEKAQ--------KDKFSWTTMIVGLAISG------------------------------ 144
+E A+ K SWTTM+VG A SG
Sbjct: 259 LESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHA 318
Query: 145 -NGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
G +AL +F++M +I PDEV V LSAC+
Sbjct: 319 NRGKEALALFNEMQAMNINPDEVTMVSCLSACSQ 352
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 9/147 (6%)
Query: 40 WTAMIDGYLRVNRFREALTLFQE-MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYI 98
W I G+L REA+ L++ +Q D +T + A A L + +G I ++
Sbjct: 74 WNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHV 133
Query: 99 DKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTMIVGLAISGNGDKAL 150
+DIF NA+I + C D++ A+K D SW +MI G G +AL
Sbjct: 134 LHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEAL 193
Query: 151 DMFSQMLRASIKPDEVAYVGVLSACTH 177
+ + +M IKPDEV +GV+S+C
Sbjct: 194 NFYREMKVEGIKPDEVTMIGVVSSCAQ 220
>gi|115468780|ref|NP_001057989.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|50725579|dbj|BAD33047.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|113596029|dbj|BAF19903.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|125597760|gb|EAZ37540.1| hypothetical protein OsJ_21869 [Oryza sativa Japonica Group]
Length = 530
Score = 175 bits (443), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 86/186 (46%), Positives = 119/186 (63%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ISWT +VS Y GQ+D AR F+Q E+D +LWTAMI+ ++ F EALTLF
Sbjct: 210 MPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINACVQHGCFEEALTLF 269
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++MQ + D FT+V++LT ANL ALD GEWI Y ++ K+K D G ALIDMY C
Sbjct: 270 RDMQMQRVEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKMKIDAVLGTALIDMYSKC 329
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+EK+ +D +WT +I GLA +G +AL++F M R+ +KPD V ++GVL
Sbjct: 330 GHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDMQRSKVKPDGVTFIGVL 389
Query: 173 SACTHN 178
SAC H
Sbjct: 390 SACCHG 395
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 98/182 (53%), Gaps = 13/182 (7%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + ++++ Y G+VDIAR+ FD+MP R VLW M+ Y+R + A+ L ++M+
Sbjct: 83 DAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGWYSAAVALSEQME 142
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
S + D T+V+ +TA + R L LG I Y+D N ++ NAL+DMY +E
Sbjct: 143 RSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMD-NVFGFNLPVANALLDMYTKNDCLE 201
Query: 125 KAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+A K + SWT ++ G ++G DKA +F+Q + D + + +++AC
Sbjct: 202 EAVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQ----CKEKDLILWTAMINACV 257
Query: 177 HN 178
+
Sbjct: 258 QH 259
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + TA++ Y G ++ + + F +M RD WTA+I G + AL LFQ+MQ
Sbjct: 315 DAVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDMQ 374
Query: 65 TSNIMGDEFTIVSILTARANLRALDLG 91
S + D T + +L+A + +D G
Sbjct: 375 RSKVKPDGVTFIGVLSACCHGGLVDEG 401
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/183 (43%), Positives = 123/183 (67%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N DV A+V Y+ G + AR+ F +MP ++ V W +MI G + +F+E+L +F++
Sbjct: 259 NLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRK 318
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
MQ + D+ T+V++L + ANL L+LG+W+ Y+D+N+++ D F GNAL+DMY C
Sbjct: 319 MQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGS 378
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+++A +KD +S+T MIVGLA+ G G KALD+FS+M + I+PDEV +VGVL+A
Sbjct: 379 IDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTA 438
Query: 175 CTH 177
C+H
Sbjct: 439 CSH 441
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 93/162 (57%), Gaps = 9/162 (5%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
AR+ FD P+RD V WT MI GY+++ RE + LF EM N+ D T+V +L++ A
Sbjct: 179 ARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCAR 238
Query: 85 LRALDLGEWIKTYIDKNK-VKNDIFAGNALIDMYCICADV--------EKAQKDKFSWTT 135
L L LG + YI +N V D+F GNAL+DMY C D E K+ SW +
Sbjct: 239 LGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNS 298
Query: 136 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
MI GLA G ++L MF +M R +KPD+V V VL++C +
Sbjct: 299 MISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCAN 340
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 9/154 (5%)
Query: 31 QMPERDYVLWTAMIDGYLRVNRFR-EALTLFQEMQTSNIMGDEFTIVSILTARANLRALD 89
Q+ + L+ A+I G N E L ++++M + I+ D +TI +L A A RA+
Sbjct: 83 QLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVR 142
Query: 90 LGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLA 141
GE + K + +D++ N L+ MY +C + A Q+D SWTTMI G
Sbjct: 143 EGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYV 202
Query: 142 ISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
G + + +F +M +++ D + V VLS+C
Sbjct: 203 KMGFAREGVGLFFEMCGENLQADGMTLVIVLSSC 236
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+V Y G +D A F M +D +TAMI G + +AL LF EM I
Sbjct: 368 ALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEP 427
Query: 71 DEFTIVSILTARANLRALDLG 91
DE T V +LTA +++ ++ G
Sbjct: 428 DEVTFVGVLTACSHVGLVEEG 448
>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/183 (43%), Positives = 123/183 (67%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N DV A+V Y+ G + AR+ F +MP ++ V W +MI G + +F+E+L +F++
Sbjct: 237 NLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRK 296
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
MQ + D+ T+V++L + ANL L+LG+W+ Y+D+N+++ D F GNAL+DMY C
Sbjct: 297 MQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGS 356
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+++A +KD +S+T MIVGLA+ G G KALD+FS+M + I+PDEV +VGVL+A
Sbjct: 357 IDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTA 416
Query: 175 CTH 177
C+H
Sbjct: 417 CSH 419
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 21/144 (14%)
Query: 31 QMPERDYVLWTAMIDGYLRVNRFR-EALTLFQEMQTSNIMGDEFTIVSILTARANLRALD 89
Q+ + L+ A+I G N E L ++++M + I+ D +TI +L A A RA+
Sbjct: 98 QLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVR 157
Query: 90 LGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMI---- 137
GE + K + +D++ N L+ MY +C + A Q+D SWTTMI
Sbjct: 158 EGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYV 217
Query: 138 --------VGLAISGNGDKALDMF 153
VGL I N + LD+F
Sbjct: 218 KMGFAREGVGLYIIRNSNVNLDVF 241
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+V Y G +D A F M +D +TAMI G + +AL LF EM I
Sbjct: 346 ALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEP 405
Query: 71 DEFTIVSILTARANLRALDLG 91
DE T V +LTA +++ ++ G
Sbjct: 406 DEVTFVGVLTACSHVGLVEEG 426
>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 566
Score = 172 bits (436), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 86/185 (46%), Positives = 118/185 (63%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ ++++SW A++ Y G + AR+ FD M +RD + WT MI Y + +F EAL LF
Sbjct: 239 MQWRNLVSWNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLF 298
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EM S + DE T+ S+L+A A+ +LD+GE YI K VK DI+ GNALIDMYC C
Sbjct: 299 KEMMESKVKPDEITVASVLSACAHTGSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCKC 358
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VEKA +KD SWT++I GLA++G D ALD FS+MLR ++P A+VG+L
Sbjct: 359 GVVEKALEVFKEMRKKDSVSWTSIISGLAVNGFADSALDYFSRMLREVVQPSHGAFVGIL 418
Query: 173 SACTH 177
AC H
Sbjct: 419 LACAH 423
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 39/206 (18%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+++ Y + G + +A++ FD+MPERD V W +++ GY + RFRE L +F+ M+ + + G
Sbjct: 117 ALINMYGSCGHLGLAQKVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKG 176
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA---- 126
D T+V ++ A +L + + + YI++N V+ D++ GN LIDMY V A
Sbjct: 177 DAVTMVKVVLACTSLGEWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVF 236
Query: 127 -----------------------------------QKDKFSWTTMIVGLAISGNGDKALD 151
Q+D SWT MI + +G +AL
Sbjct: 237 DQMQWRNLVSWNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALR 296
Query: 152 MFSQMLRASIKPDEVAYVGVLSACTH 177
+F +M+ + +KPDE+ VLSAC H
Sbjct: 297 LFKEMMESKVKPDEITVASVLSACAH 322
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 8/160 (5%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A F Q+ W MI G+ ++ EA+ ++ M ++G+ T + + A A
Sbjct: 30 AHNLFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRMYNLMYRQGLLGNNLTYLFLFKACAR 89
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTM 136
+ + G I + K ++ ++ NALI+MY C + AQK D SW ++
Sbjct: 90 VPDVSCGSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQKVFDEMPERDLVSWNSL 149
Query: 137 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+ G + L +F M A +K D V V V+ ACT
Sbjct: 150 VCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACT 189
>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
[Vitis vinifera]
Length = 576
Score = 172 bits (435), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 84/182 (46%), Positives = 118/182 (64%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+DV W A+V+ Y G VD AR F++MPER+ + WTA+I GY +++R EA+T+F+ M
Sbjct: 203 RDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRM 262
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
Q + DE +++ L+A A+L AL+LGEWI YIDK+ + + NALIDMY C +
Sbjct: 263 QLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKI 322
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
EKA K +WT+MI GLA+ G G +AL+MFS M R IKP+E+ +V +LSAC
Sbjct: 323 EKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSAC 382
Query: 176 TH 177
H
Sbjct: 383 CH 384
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 80/173 (46%), Gaps = 12/173 (6%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G+++ A + F M + + WT+MIDG REAL +F M+ + I
Sbjct: 311 ALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKP 370
Query: 71 DEFTIVSILTARANLRALDLGEW-IKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK- 128
+E T V+IL+A ++ +++G W K K +K I +ID+ +++AQ+
Sbjct: 371 NEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQEL 430
Query: 129 --------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+ W +++ I G+ + +++ ++P +LS
Sbjct: 431 VRGMPFEANAPIWGSLLAAARIHGDAELGKQALQHLIK--VEPHNSGNYTLLS 481
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 81/209 (38%), Gaps = 43/209 (20%)
Query: 12 IVSRYI----NRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN 67
++SR+I + G + F D L+ +I EA+ L+ + S+
Sbjct: 75 LLSRFIEACSSLGFSHYSHSIFTHKTRPDIYLYNTIIKALSNPELATEAILLYNRILASD 134
Query: 68 IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA- 126
+ D +++ +L A L A+ +G I + +DI ALI MY C V +A
Sbjct: 135 LRFDTYSLPFVLKAVVRLLAIHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEAR 194
Query: 127 --------------------------------------QKDKFSWTTMIVGLAISGNGDK 148
+++ SWT +I G A ++
Sbjct: 195 QLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNE 254
Query: 149 ALDMFSQMLRASIKPDEVAYVGVLSACTH 177
A+ MF +M ++PDE+A + LSAC H
Sbjct: 255 AITMFRRMQLEEVEPDEIAMLAALSACAH 283
>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
Length = 576
Score = 172 bits (435), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 84/182 (46%), Positives = 118/182 (64%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+DV W A+V+ Y G VD AR F++MPER+ + WTA+I GY +++R EA+T+F+ M
Sbjct: 203 RDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRM 262
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
Q + DE +++ L+A A+L AL+LGEWI YIDK+ + + NALIDMY C +
Sbjct: 263 QLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKI 322
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
EKA K +WT+MI GLA+ G G +AL+MFS M R IKP+E+ +V +LSAC
Sbjct: 323 EKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSAC 382
Query: 176 TH 177
H
Sbjct: 383 CH 384
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 80/173 (46%), Gaps = 12/173 (6%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G+++ A + F M + + WT+MIDG REAL +F M+ + I
Sbjct: 311 ALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKP 370
Query: 71 DEFTIVSILTARANLRALDLGEW-IKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK- 128
+E T V+IL+A ++ +++G W K K +K I +ID+ +++AQ+
Sbjct: 371 NEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQEL 430
Query: 129 --------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+ W +++ I G+ + +++ ++P +LS
Sbjct: 431 VRGMPFEANAPIWGSLLAAARIHGDAELGKQALQHLIK--VEPHNSGNYTLLS 481
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 81/209 (38%), Gaps = 43/209 (20%)
Query: 12 IVSRYI----NRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN 67
++SR+I + G + F D L+ +I EA+ L+ + S+
Sbjct: 75 LLSRFIEACSSLGFSHYSHSIFTHKTRPDIYLYNTIIKALSNPELATEAILLYNRILASD 134
Query: 68 IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA- 126
+ D +++ +L A L A+ +G I + +DI ALI MY C V +A
Sbjct: 135 LRFDTYSLPFVLKAVVRLLAIHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEAR 194
Query: 127 --------------------------------------QKDKFSWTTMIVGLAISGNGDK 148
+++ SWT +I G A ++
Sbjct: 195 QLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNE 254
Query: 149 ALDMFSQMLRASIKPDEVAYVGVLSACTH 177
A+ MF +M ++PDE+A + LSAC H
Sbjct: 255 AITMFRRMQLEEVEPDEIAMLAALSACAH 283
>gi|357123975|ref|XP_003563682.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Brachypodium distachyon]
Length = 527
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 84/186 (45%), Positives = 118/186 (63%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++ISWT +VS Y GQ+D AR F Q E+D ++WTAMI+ ++ F EAL+LF
Sbjct: 207 MPSRNIISWTILVSGYAFAGQLDKARVLFYQCSEKDLIMWTAMINACVQHGCFEEALSLF 266
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ + D FTIV++LT ANL ALD GEWI + K+K D G ALIDMY C
Sbjct: 267 REMQMQRVEPDRFTIVTLLTCCANLGALDQGEWIHQFAVDRKMKVDAVLGTALIDMYAKC 326
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
V+K+ +D +WT++I GLA +G +AL++F M R+ +KPD + ++GVL
Sbjct: 327 GHVKKSMEVFEQMQGRDTTAWTSIICGLATNGQAGRALELFEDMERSKVKPDSITFIGVL 386
Query: 173 SACTHN 178
SAC H
Sbjct: 387 SACCHG 392
Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 94/182 (51%), Gaps = 13/182 (7%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + ++++ Y G+ D+AR+ FD+MP R V+W MI Y+R R+ A+ L +EM+
Sbjct: 80 DAYTASSLMDMYTLLGRADVARKLFDEMPHRALVVWNMMIRCYVRCGRYTAAIALAEEME 139
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
S + D+ T+V+ +T + L LG I Y+D + NAL+DMY +E
Sbjct: 140 RSGLTPDKVTLVTSVTVCSRAGDLSLGRRIHAYMD-GVFGFSLPVANALLDMYMKNGCLE 198
Query: 125 KAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+A K + SWT ++ G A +G DKA +F Q + D + + +++AC
Sbjct: 199 EAVKLFEQMPSRNIISWTILVSGYAFAGQLDKARVLFYQ----CSEKDLIMWTAMINACV 254
Query: 177 HN 178
+
Sbjct: 255 QH 256
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + TA++ Y G V + + F+QM RD WT++I G + AL LF++M+
Sbjct: 312 DAVLGTALIDMYAKCGHVKKSMEVFEQMQGRDTTAWTSIICGLATNGQAGRALELFEDME 371
Query: 65 TSNIMGDEFTIVSILTARANLRALDLG 91
S + D T + +L+A + +D G
Sbjct: 372 RSKVKPDSITFIGVLSACCHGGLVDEG 398
>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 591
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/182 (44%), Positives = 119/182 (65%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
K+V WT++V+ Y+ GQ+D AR F++ P RD VLWTAMI+GY++ N F +A+ LF EM
Sbjct: 273 KNVNCWTSMVTGYVICGQLDQARYLFERSPSRDVVLWTAMINGYVQFNHFEDAIALFGEM 332
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
Q + D+F +V++LT A L AL+ G+WI YID+N++K D ALI+MY C +
Sbjct: 333 QIRGVEPDKFIVVTLLTGCAQLGALEQGKWIHNYIDENRIKMDAVVSTALIEMYAKCGCI 392
Query: 124 EKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
EK+ + D SWT++I GLA++G +AL++F M +KPD++ +V VLSAC
Sbjct: 393 EKSLEIFNGLKDMDTTSWTSIICGLAMNGKTSEALELFEAMQTCGLKPDDITFVAVLSAC 452
Query: 176 TH 177
H
Sbjct: 453 GH 454
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 88/154 (57%), Gaps = 10/154 (6%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ-TSNIM 69
+++ Y G V+ Q F++MPERD V W MI GY+R RF EA+ +++ MQ SN
Sbjct: 148 SLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVRCKRFEEAVDVYRRMQMESNEK 207
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-- 127
+E T+VS L+A A LR L+LG+ I YI N++ GNAL+DMYC C V A+
Sbjct: 208 PNEATVVSTLSACAVLRNLELGKEIHDYI-ANELDLTPIMGNALLDMYCKCGCVSVAREI 266
Query: 128 ------KDKFSWTTMIVGLAISGNGDKALDMFSQ 155
K+ WT+M+ G I G D+A +F +
Sbjct: 267 FDAMIVKNVNCWTSMVTGYVICGQLDQARYLFER 300
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 89/184 (48%), Gaps = 9/184 (4%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
+++D+++ S + G + A + F+ + ++ MI +++ R A++LFQ
Sbjct: 38 QDRDILNKLMAFSMDSSLGDFNYANRIFNHIHHPSLFIYNLMIKAFVKRGSLRSAISLFQ 97
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
+++ + D +T +L + + GE I ++ K ++ D + N+L+DMY
Sbjct: 98 QLRERGVWPDNYTYPYVLKGIGCIGEVREGEKIHAFVVKTGLEFDPYVCNSLMDMYAELG 157
Query: 122 DVEK--------AQKDKFSWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGVL 172
VE ++D SW MI G ++A+D++ +M + ++ KP+E V L
Sbjct: 158 LVEGFTQVFEEMPERDAVSWNIMISGYVRCKRFEEAVDVYRRMQMESNEKPNEATVVSTL 217
Query: 173 SACT 176
SAC
Sbjct: 218 SACA 221
>gi|297846530|ref|XP_002891146.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336988|gb|EFH67405.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 554
Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/186 (43%), Positives = 123/186 (66%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++K+V WT++VS Y++ G+ D AR+ F++ P +D VLWTAM++GY++ NRF EAL LF
Sbjct: 192 MRDKNVKCWTSMVSGYVSNGRTDEARELFERSPVKDVVLWTAMMNGYVQFNRFDEALELF 251
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ MQT+ I D F +VS+LT A AL+ G+WI YI +N+V D G AL+DMY C
Sbjct: 252 RCMQTARIRPDNFVLVSLLTGCAQTGALEQGKWIHGYIRENRVTVDKVVGTALVDMYAKC 311
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E A ++D SWT++I GLA +G +ALD++ +M ++ D++ +V VL
Sbjct: 312 GCIETALGVFYEMKERDTASWTSLIYGLATNGMSGRALDLYYEMENVGVRLDDITFVAVL 371
Query: 173 SACTHN 178
+AC+H
Sbjct: 372 TACSHG 377
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 106/205 (51%), Gaps = 41/205 (20%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-QTSNIM 69
+++ Y G+++I + FD+MPERD V W +I Y+ RF +A+++FQ M + SN+
Sbjct: 70 SLMGMYAALGKMEITHKVFDEMPERDVVSWNGLISSYVGHGRFEDAISVFQRMSRESNLK 129
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-- 127
DE TIVS L+A + L+ L++GE I Y+ + + + GNAL+DM+C C ++KA+
Sbjct: 130 ADEGTIVSTLSACSVLKNLEIGERIYRYV-VTEFEMSVRTGNALVDMFCKCGCLDKARAI 188
Query: 128 ------KDKFSWTTMIVGLAISG------------------------NG-------DKAL 150
K+ WT+M+ G +G NG D+AL
Sbjct: 189 FDSMRDKNVKCWTSMVSGYVSNGRTDEARELFERSPVKDVVLWTAMMNGYVQFNRFDEAL 248
Query: 151 DMFSQMLRASIKPDEVAYVGVLSAC 175
++F M A I+PD V +L+ C
Sbjct: 249 ELFRCMQTARIRPDNFVLVSLLTGC 273
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 9/143 (6%)
Query: 43 MIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK 102
M+ F + L LF E++ + D FT+ +L + LR + GE + Y K
Sbjct: 1 MLKSLAESKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKTG 60
Query: 103 VKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFS 154
+++D + N+L+ MY +E K D SW +I G + A+ +F
Sbjct: 61 LESDSYVCNSLMGMYAALGKMEITHKVFDEMPERDVVSWNGLISSYVGHGRFEDAISVFQ 120
Query: 155 QMLRAS-IKPDEVAYVGVLSACT 176
+M R S +K DE V LSAC+
Sbjct: 121 RMSRESNLKADEGTIVSTLSACS 143
>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 593
Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/185 (44%), Positives = 118/185 (63%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK K+++SW A++ Y G + A++ F++MP RD + WT+MI GY + EA+ LF
Sbjct: 275 MKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLF 334
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
QEM S + DE T+ + L+A A+L +LD GE + YI K+ +K+D+F GN+LIDMYC C
Sbjct: 335 QEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKC 394
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VEKA +D SWT++I GLA++G + AL++F QML+ I P +VGVL
Sbjct: 395 GVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVL 454
Query: 173 SACTH 177
AC H
Sbjct: 455 LACAH 459
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 106/206 (51%), Gaps = 39/206 (18%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y+ G++ +A++ FD M ERD V W ++I GY + NRF++ L LF+EMQ N+
Sbjct: 153 ALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRA 212
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY------------- 117
D T++ ++A L ++G+++ YID++ V D++ GN LIDMY
Sbjct: 213 DSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVF 272
Query: 118 -----------------------CICADV---EKAQKDKFSWTTMIVGLAISGNGDKALD 151
+ A E +D SWT+MI+G +++ +A+
Sbjct: 273 YQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVK 332
Query: 152 MFSQMLRASIKPDEVAYVGVLSACTH 177
+F +M+ + +KPDE+ LSAC H
Sbjct: 333 LFQEMMVSMVKPDEITVATALSACAH 358
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 81/179 (45%), Gaps = 9/179 (5%)
Query: 5 DVISWTAIVSRY-INRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
D S + ++ Y ++ + A F+Q+ ++W MI G + +R +A+ + M
Sbjct: 45 DPSSISEVIKHYALSPQSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTM 104
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
I G T + + + A + + G+ ++ + K ++ +F NALI MY ++
Sbjct: 105 YYKGIQGSHLTFIFLFKSCARVSDVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGEL 164
Query: 124 EKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
AQK D SW ++I G K LD+F +M +++ D V + +SA
Sbjct: 165 AMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISA 223
>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 552
Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/185 (44%), Positives = 118/185 (63%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK K+++SW A++ Y G + A++ F++MP RD + WT+MI GY + EA+ LF
Sbjct: 234 MKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLF 293
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
QEM S + DE T+ + L+A A+L +LD GE + YI K+ +K+D+F GN+LIDMYC C
Sbjct: 294 QEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKC 353
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VEKA +D SWT++I GLA++G + AL++F QML+ I P +VGVL
Sbjct: 354 GVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVL 413
Query: 173 SACTH 177
AC H
Sbjct: 414 LACAH 418
Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 106/206 (51%), Gaps = 39/206 (18%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y+ G++ +A++ FD M ERD V W ++I GY + NRF++ L LF+EMQ N+
Sbjct: 112 ALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRA 171
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY------------- 117
D T++ ++A L ++G+++ YID++ V D++ GN LIDMY
Sbjct: 172 DSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVF 231
Query: 118 -----------------------CICADV---EKAQKDKFSWTTMIVGLAISGNGDKALD 151
+ A E +D SWT+MI+G +++ +A+
Sbjct: 232 YQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVK 291
Query: 152 MFSQMLRASIKPDEVAYVGVLSACTH 177
+F +M+ + +KPDE+ LSAC H
Sbjct: 292 LFQEMMVSMVKPDEITVATALSACAH 317
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 9/179 (5%)
Query: 5 DVISWTAIVSRY-INRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
D S + ++ Y ++ + A F+Q+ ++W MI G + +R +A+ + M
Sbjct: 4 DPSSISEVIKHYALSPQSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTM 63
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
I G T + + + A + + G+ ++ + K ++ F NALI MY ++
Sbjct: 64 YYKGIQGSHLTFIFLFKSCARVSDVRQGQMVRVHSMKLGFESXSFVSNALIHMYVCFGEL 123
Query: 124 EKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
AQK D SW ++I G K LD+F +M +++ D V + +SA
Sbjct: 124 AMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISA 182
>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
Group]
gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
Length = 651
Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats.
Identities = 75/185 (40%), Positives = 124/185 (67%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
++++ V+SWT ++ + G +D AR+ FD+MPERD W A++ GY++ + +EAL+LF
Sbjct: 289 IEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLF 348
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EMQ ++++ DE T+V++LTA + L AL++G W+ YI+K+++ + G +LIDMY C
Sbjct: 349 HEMQEASVVPDEITMVNLLTACSQLGALEMGMWVHRYIEKHRLVFSVALGTSLIDMYAKC 408
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++EKA +K+ +WT MI GLA G+ ++A++ F M+ KPDE+ ++GVL
Sbjct: 409 GNIEKAIHIFKEIPEKNALTWTAMICGLANHGHANEAIEHFRTMIELGQKPDEITFIGVL 468
Query: 173 SACTH 177
SAC H
Sbjct: 469 SACCH 473
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 63/200 (31%), Positives = 96/200 (48%), Gaps = 41/200 (20%)
Query: 19 RGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM--QTSNIMGDEFTIV 76
RG ++ AR+ FD+ P RD V W +I GY+R EAL LF M + + + DE T++
Sbjct: 173 RGPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMI 232
Query: 77 SILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------K 128
+ ++ +R L+LG + ++D + V + NAL+DMY C +E A+ +
Sbjct: 233 AAVSGCGQMRDLELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHR 292
Query: 129 DKFSWTTMIVGLAISGNGD-------------------------------KALDMFSQML 157
SWTTMIVG A G D +AL +F +M
Sbjct: 293 TVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQ 352
Query: 158 RASIKPDEVAYVGVLSACTH 177
AS+ PDE+ V +L+AC+
Sbjct: 353 EASVVPDEITMVNLLTACSQ 372
Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 11/133 (8%)
Query: 54 REALTLFQEM-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNA 112
R L L++ + ++ D T +L A A LR G+ ++ + + +D+F NA
Sbjct: 106 RRCLPLYRALLRSGTARPDHLTFPFLLKACARLREWGYGDAALAHVLRLGLDSDVFVVNA 165
Query: 113 LIDMYCICADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLR--ASIK 162
I +E A++ D SW T+I G GN +AL++F +M+ A ++
Sbjct: 166 ATHFLSIRGPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVR 225
Query: 163 PDEVAYVGVLSAC 175
PDEV + +S C
Sbjct: 226 PDEVTMIAAVSGC 238
>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 641
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 124/185 (67%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ K+++SW A+++ Y G + A++ F++MP R+ + WT MI G + N+ +AL LF
Sbjct: 319 MQEKNIVSWNAMLTGYATAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALKLF 378
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
QEM +N+ DE T+ S+L+A ++L LD G+ + Y+ ++ +K+D++ GNALIDMYC C
Sbjct: 379 QEMMDANVKPDEITVSSVLSACSHLGLLDTGQTVHEYMCRHDIKSDVYVGNALIDMYCKC 438
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
V+KA +KD SWT+MI+GLA++G D ++FSQMLR ++P +++G+L
Sbjct: 439 GVVDKALEVFHDMKKKDSVSWTSMILGLAVNGFVDNVFELFSQMLRDGLQPTHGSFIGIL 498
Query: 173 SACTH 177
ACTH
Sbjct: 499 LACTH 503
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 101/206 (49%), Gaps = 39/206 (18%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y G++ A++ FD+M +RD V W ++I GY + NRF+E L LF M+ +N+
Sbjct: 197 SLIRMYGYFGELGYAQKVFDKMDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMREANVTA 256
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM-------------- 116
D T+V ++ A + L + + + YI+ V D++ GN+LIDM
Sbjct: 257 DSVTMVKVILACSYLCEDGVVDSMVKYIEDKHVDIDVYLGNSLIDMYGRRGLVDLARRVF 316
Query: 117 -----------------YCICADVEKAQK--------DKFSWTTMIVGLAISGNGDKALD 151
Y D+ A+K + SWT MI G A + AL
Sbjct: 317 DRMQEKNIVSWNAMLTGYATAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALK 376
Query: 152 MFSQMLRASIKPDEVAYVGVLSACTH 177
+F +M+ A++KPDE+ VLSAC+H
Sbjct: 377 LFQEMMDANVKPDEITVSSVLSACSH 402
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 89/186 (47%), Gaps = 10/186 (5%)
Query: 2 KNKDVISWTAIVSRY-INRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+K+ S + ++ Y ++R ++ A F Q+ + +++ +I G + EA+ ++
Sbjct: 85 HHKNPKSMSNVIKSYALSRSHLNKANFAFIQIGQPTLLIFNYLIRGLSQSENPNEAIVMY 144
Query: 61 QE-MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+ M I+GD T + + A + ++ + G+ + K + +F N+LI MY
Sbjct: 145 SDLMYNQGILGDNLTFIYLFKACSRVKDVLHGQVFHVQVLKLGFGSYLFIENSLIRMYGY 204
Query: 120 CADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
++ AQK D SW ++I G + + LD+F+ M A++ D V V V
Sbjct: 205 FGELGYAQKVFDKMDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMREANVTADSVTMVKV 264
Query: 172 LSACTH 177
+ AC++
Sbjct: 265 ILACSY 270
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 29/173 (16%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFQEM 63
DV A++ Y G VD A + F M ++D V WT+MI G L VN F + LF +M
Sbjct: 424 DVYVGNALIDMYCKCGVVDKALEVFHDMKKKDSVSWTSMILG-LAVNGFVDNVFELFSQM 482
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ + + IL A + +D G E+ ++ ++ ++ ++D+
Sbjct: 483 LRDGLQPTHGSFIGILLACTHAGLVDKGLEYFESMEHVYGLRPEMKHYGCVVDL------ 536
Query: 123 VEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
L+ SG D+A + QM + PD V + +LSAC
Sbjct: 537 -----------------LSRSGELDRAYEFIKQM---PVVPDVVLWRILLSAC 569
>gi|326518042|dbj|BAK07273.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 527
Score = 168 bits (426), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 84/186 (45%), Positives = 116/186 (62%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++V+SWT +VS Y GQVD AR F Q E+D ++WTAMI+ Y++ F EAL+LF
Sbjct: 207 MPSRNVVSWTTLVSGYAFAGQVDKARLLFHQCTEKDLIMWTAMINAYVQHGCFIEALSLF 266
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++MQ I D FT+V++LT ANL ALD G+ I + + +K D G ALIDMY C
Sbjct: 267 RDMQMHQIEPDRFTVVTLLTCCANLGALDQGQLIHQFAEGRNMKLDAVLGTALIDMYAKC 326
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VEK+ +D +WT +I GLA +G +AL++F M R+ KPD V ++GVL
Sbjct: 327 GHVEKSVEVFERMEGRDTKAWTAIICGLATNGQAGRALELFEDMERSEAKPDSVTFIGVL 386
Query: 173 SACTHN 178
SAC H
Sbjct: 387 SACCHG 392
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 85/159 (53%), Gaps = 9/159 (5%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + ++++ Y G+++ AR+ FD+MP+R V+W M+ Y+R R EA+ L +EM+
Sbjct: 80 DAYTASSLMDMYTMLGRLEAARKVFDEMPQRAVVVWNMMLRCYVRCGRNTEAVALAEEME 139
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ D T+++ LTA + L LG I Y+D + NAL+DMY +E
Sbjct: 140 RGRLTPDRVTLLTALTACSRAGDLSLGRKIHAYMD-GVTGFSLPVANALLDMYVKNGCLE 198
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQ 155
+A ++ SWTT++ G A +G DKA +F Q
Sbjct: 199 EAVNLFEKMPSRNVVSWTTLVSGYAFAGQVDKARLLFHQ 237
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 70/161 (43%), Gaps = 11/161 (6%)
Query: 24 IARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARA 83
+A C MP R+ L +I R + + + ++ +++ ++ D FT +L A
Sbjct: 1 MAPACHRGMPLRECNL---LIRTLARRSSHADVMAVYYDLRERGLVADSFTYPFVLRAIG 57
Query: 84 NLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--DKFS------WTT 135
L+ G K + D + ++L+DMY + +E A+K D+ W
Sbjct: 58 ALQISVEGRKAHAATLKTGFRWDAYTASSLMDMYTMLGRLEAARKVFDEMPQRAVVVWNM 117
Query: 136 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
M+ G +A+ + +M R + PD V + L+AC+
Sbjct: 118 MLRCYVRCGRNTEAVALAEEMERGRLTPDRVTLLTALTACS 158
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + TA++ Y G V+ + + F++M RD WTA+I G + AL LF++M+
Sbjct: 312 DAVLGTALIDMYAKCGHVEKSVEVFERMEGRDTKAWTAIICGLATNGQAGRALELFEDME 371
Query: 65 TSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
S D T + +L+A + +D G + + + +++ + + L+++ +
Sbjct: 372 RSEAKPDSVTFIGVLSACCHGGLVDEGRKQFRAMKEVYRIRPRVEHYSCLVNLLGRAGQL 431
Query: 124 EKAQK 128
++A+K
Sbjct: 432 DEAEK 436
>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 584
Score = 168 bits (425), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 81/185 (43%), Positives = 114/185 (61%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V SW A+V Y G VDIAR FD MPERD V W +MI Y++ R EAL LF
Sbjct: 218 MPERNVGSWNAVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNGRAAEALELF 277
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EM + + D I SIL+A A + ALD+G WI Y+ ++K++ND+F AL+DMY C
Sbjct: 278 KEMMLAGVSADSIIITSILSACAQIGALDMGRWIHAYMKRSKLRNDVFLDTALVDMYAKC 337
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ A +K+ SW M+ GLAI G+G AL++F QM + P+++ +V VL
Sbjct: 338 GCIDTAFGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQMESTGVGPNDITFVAVL 397
Query: 173 SACTH 177
SAC+H
Sbjct: 398 SACSH 402
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 67/179 (37%), Gaps = 47/179 (26%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV + A++ Y+ G + A FD+MP + V W MI G A LF EM
Sbjct: 160 DVFTRNALIHMYLKCGSITDAHLLFDEMPNHNVVTWNTMITGCFGCGDTERARRLFGEMP 219
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
N+ G W NA++ Y V+
Sbjct: 220 ERNV----------------------GSW-----------------NAVVGGYSKLGHVD 240
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
A ++D SW +MI +G +AL++F +M+ A + D + +LSAC
Sbjct: 241 IARSLFDLMPERDVVSWGSMISAYVQNGRAAEALELFKEMMLAGVSADSIIITSILSAC 299
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 9/162 (5%)
Query: 4 KDVISWTAIVSRY-INRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
KD T V Y ++ +D A F + D WT MI G++ +AL +
Sbjct: 57 KDTFIATKTVESYAVSARNIDYAFWVFVGINYPDSYSWTTMIRGFVEAKNPEKALEFYGL 116
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M+ + ++FT + +L A + G + + K D+F NALI MY C
Sbjct: 117 MRQRGVELNKFTFLFVLKAYGLRPSYQEGRIVHGKLVKVGFCYDVFTRNALIHMYLKCGS 176
Query: 123 V--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
+ E + +W TMI G G+ ++A +F +M
Sbjct: 177 ITDAHLLFDEMPNHNVVTWNTMITGCFGCGDTERARRLFGEM 218
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV TA+V Y G +D A F+ MP ++ W AM+ G AL LF++M+
Sbjct: 323 DVFLDTALVDMYAKCGCIDTAFGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQME 382
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIK 95
++ + ++ T V++L+A +++ +++ G W K
Sbjct: 383 STGVGPNDITFVAVLSACSHIGSVEEG-WKK 412
Score = 36.6 bits (83), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 129 DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
D +SWTTMI G + N +KAL+ + M + ++ ++ ++ VL A
Sbjct: 90 DSYSWTTMIRGFVEAKNPEKALEFYGLMRQRGVELNKFTFLFVLKA 135
>gi|242096286|ref|XP_002438633.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
gi|241916856|gb|EER90000.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
Length = 529
Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/186 (43%), Positives = 117/186 (62%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ISWT +VS Y GQ+D AR F Q ++D +LWTAMI+ ++ F EALTLF
Sbjct: 207 MPERNIISWTILVSGYAVAGQLDKARMLFYQCTQKDLILWTAMINACVQHGSFEEALTLF 266
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++MQ + D+FT+V++LT AN+ ALD GEWI Y + +K D G ALI+MY C
Sbjct: 267 RDMQLQRVEPDKFTVVTLLTCCANIGALDQGEWIHQYAEGRNMKIDAVLGTALIEMYSKC 326
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
V+K+ +D +WT +I GLA +G KAL++F +M R+ KPD + ++GVL
Sbjct: 327 GHVDKSLQIFGRMQGRDAAAWTAIICGLATNGQASKALELFEEMQRSKTKPDGITFIGVL 386
Query: 173 SACTHN 178
+AC H
Sbjct: 387 NACCHG 392
Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 97/182 (53%), Gaps = 13/182 (7%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + ++++ Y G+VD AR+ FD+MP+R VLW M+ Y+R RF A+ L +EM+
Sbjct: 80 DAYTASSLLEMYTMLGRVDFARKVFDEMPQRFLVLWNMMMRCYIRCGRFTAAVALAEEME 139
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
S D T+V+ +TA + L LG I+ Y+D + NAL+DMY +E
Sbjct: 140 RSGATPDRVTLVTAVTACSRAGDLSLGRRIRAYMD-GVFGFSLPVANALLDMYTKNGYLE 198
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+A +++ SWT ++ G A++G DKA +F Q + D + + +++AC
Sbjct: 199 EAVKMFQQMPERNIISWTILVSGYAVAGQLDKARMLFYQ----CTQKDLILWTAMINACV 254
Query: 177 HN 178
+
Sbjct: 255 QH 256
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + TA++ Y G VD + Q F +M RD WTA+I G + +AL LF+EMQ
Sbjct: 312 DAVLGTALIEMYSKCGHVDKSLQIFGRMQGRDAAAWTAIICGLATNGQASKALELFEEMQ 371
Query: 65 TSNIMGDEFTIVSILTARANLRALDLG 91
S D T + +L A + +D G
Sbjct: 372 RSKTKPDGITFIGVLNACCHGGLVDEG 398
>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/185 (43%), Positives = 116/185 (62%), Gaps = 9/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIA-RQCFDQMPERDYVLWTAMIDGYLRVNRFREALTL 59
M +DV+SW A++S Y RG +++A R+ F + P ++ V W AMI GY RF E L L
Sbjct: 169 MLERDVVSWNALLSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVL 228
Query: 60 FQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
F++MQ + + D T+VS+L+A A++ AL GEW+ YIDKN + D F AL+DMY
Sbjct: 229 FEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSK 288
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C +EKA +KD +W ++I GL+ G+G AL +FS+ML KP+EV +V V
Sbjct: 289 CGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCV 348
Query: 172 LSACT 176
LSAC+
Sbjct: 349 LSACS 353
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 83/207 (40%), Gaps = 40/207 (19%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A VS + + A F ++P + +W +I Y ALT+F +M ++++
Sbjct: 47 ASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLP 106
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--- 127
D++T L + + ++ G I ++ K + +D+F N LI +Y C +E A+
Sbjct: 107 DKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLL 166
Query: 128 -------------------------------------KDKFSWTTMIVGLAISGNGDKAL 150
K+ SW MI G + +G + L
Sbjct: 167 DRMLERDVVSWNALLSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVL 226
Query: 151 DMFSQMLRASIKPDEVAYVGVLSACTH 177
+F M A +KPD V VLSAC H
Sbjct: 227 VLFEDMQHAGVKPDNCTLVSVLSACAH 253
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G ++ A + F+ +D W ++I G + AL +F EM
Sbjct: 280 TALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFK 339
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
+E T V +L+A + LD G E + + ++ I ++D+ +E+A++
Sbjct: 340 PNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEE 399
>gi|15221713|ref|NP_174428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169458|sp|Q9C866.1|PPR65_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31430
gi|12322531|gb|AAG51260.1|AC027135_1 PPR-repeat protein [Arabidopsis thaliana]
gi|332193234|gb|AEE31355.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 570
Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 122/186 (65%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++K+V WT++V Y++ G++D AR F++ P +D VLWTAM++GY++ NRF EAL LF
Sbjct: 208 MRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELF 267
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ MQT+ I D F +VS+LT A AL+ G+WI YI++N+V D G AL+DMY C
Sbjct: 268 RCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKC 327
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E A ++D SWT++I GLA++G +ALD++ +M ++ D + +V VL
Sbjct: 328 GCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVL 387
Query: 173 SACTHN 178
+AC H
Sbjct: 388 TACNHG 393
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 41/207 (19%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-QTSNIM 69
+++ Y + G+++I + FD+MP+RD V W +I Y+ RF +A+ +F+ M Q SN+
Sbjct: 86 SLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIGVFKRMSQESNLK 145
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-- 127
DE TIVS L+A + L+ L++GE I ++ + + + GNAL+DM+C C ++KA+
Sbjct: 146 FDEGTIVSTLSACSALKNLEIGERIYRFV-VTEFEMSVRIGNALVDMFCKCGCLDKARAV 204
Query: 128 ------KDKFSWTTMIVGLAISG------------------------NG-------DKAL 150
K+ WT+M+ G +G NG D+AL
Sbjct: 205 FDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEAL 264
Query: 151 DMFSQMLRASIKPDEVAYVGVLSACTH 177
++F M A I+PD V +L+ C
Sbjct: 265 ELFRCMQTAGIRPDNFVLVSLLTGCAQ 291
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 11/155 (7%)
Query: 31 QMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDL 90
Q P +++ M+ F + L LF E++ + D FT+ +L + LR +
Sbjct: 7 QTP--SLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIE 64
Query: 91 GEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKFSWTTMIVGLAI 142
GE + Y K ++ D + N+L+ MY + E Q+D SW +I
Sbjct: 65 GEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVG 124
Query: 143 SGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSACT 176
+G + A+ +F +M + S +K DE V LSAC+
Sbjct: 125 NGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACS 159
>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 652
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 74/185 (40%), Positives = 117/185 (63%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ K ++SWT ++ Y G +D AR+ FD+MPERD W A++ GY++ R +EAL LF
Sbjct: 283 IDKKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLF 342
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+MQ + + D+ T+V++L+A + L AL++G W+ YID+ +V + G L+DMY C
Sbjct: 343 HDMQEAMVEPDDITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKC 402
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++EKA +K+ +WT MI GLA G+ D A+ F +M+ ++PDE+ ++GVL
Sbjct: 403 GNIEKAIRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPDEITFIGVL 462
Query: 173 SACTH 177
SAC H
Sbjct: 463 SACCH 467
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 61/193 (31%), Positives = 91/193 (47%), Gaps = 40/193 (20%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN-IMGDEFTIVSILTARA 83
AR+ FD RD V W +I GY+R REAL +F M + DE T++ +++ A
Sbjct: 174 ARKLFDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSA 233
Query: 84 NLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTT 135
LR L+LG + Y++ + V+ + N ++DMY C D+E+A +K SWTT
Sbjct: 234 QLRDLELGRRLHGYVESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTT 293
Query: 136 MIVGLAISG-------------------------------NGDKALDMFSQMLRASIKPD 164
MIVG A G G +AL +F M A ++PD
Sbjct: 294 MIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPD 353
Query: 165 EVAYVGVLSACTH 177
++ V +LSAC+
Sbjct: 354 DITMVNLLSACSQ 366
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK-- 128
D T +L A A L+ + G + + D+F NA + +C+ + +A+K
Sbjct: 119 DHLTFPFLLKACARLQERNYGNAVLGNVLSLGFHADVFVVNAAMHFLAVCSSMAEARKLF 178
Query: 129 ------DKFSWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGVLSA 174
D SW T+I G G +AL+MF +M+ ++ PDEV +GV+S
Sbjct: 179 DGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSG 231
>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 615
Score = 166 bits (419), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 79/183 (43%), Positives = 113/183 (61%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ DV A++ Y+ GQ +ARQ F MP ++ V W +MI G F+EAL +F+
Sbjct: 270 HSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRR 329
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
MQT + D T+V +L + ANL L+LG+W+ +YIDKN +K D + NAL+DMY C
Sbjct: 330 MQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGYVANALVDMYAKCGS 389
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+++A KD +S+T MIVG A+ G D+AL +FS+M R ++PD V VGVLSA
Sbjct: 390 IDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGVLSA 449
Query: 175 CTH 177
C+H
Sbjct: 450 CSH 452
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 88/170 (51%), Gaps = 13/170 (7%)
Query: 16 YINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTI 75
Y G ++ + FDQ P D + WT +I Y ++ EA+ F M N D T+
Sbjct: 183 YAVSGFIEAVEKVFDQGPHWDLISWTTLIQAYSKMGYPSEAIAAFFRM---NCTADRMTL 239
Query: 76 VSILTARANLRALDLGEWIKTYIDKN--KVKNDIFAGNALIDMYCICADVEKAQ------ 127
V +L+A + L LG+ I Y+D + V +D+F GNAL+DMY C A+
Sbjct: 240 VVVLSACSQLGDFTLGKKILAYMDHHLFDVHSDVFLGNALLDMYLKCGQPHLARQLFHLM 299
Query: 128 --KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
K+ SW +MI GLA G +AL MF +M +KPD V VGVL++C
Sbjct: 300 PVKNLVSWNSMISGLAHQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSC 349
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+V Y G +D A F M +D +TAMI G+ + AL +F EM +
Sbjct: 379 ALVDMYAKCGSIDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRP 438
Query: 71 DEFTIVSILTARANLRALDLG 91
D T+V +L+A ++ L+ G
Sbjct: 439 DHVTLVGVLSACSHAGLLEEG 459
>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
Length = 602
Score = 166 bits (419), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 117/182 (64%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
K+++ W ++ + + +++ +Q F MP+RD V W +MI G+ R+ +++EALT F EM
Sbjct: 256 KNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEM 315
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ S + + T++S L+A A+ ALD G WI Y+DKN + D ++LIDMY C D+
Sbjct: 316 EFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDI 375
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+KA ++D F+WT+++ GLA+ G G+KAL FS+M A ++PD+V VGVLSAC
Sbjct: 376 DKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSAC 435
Query: 176 TH 177
H
Sbjct: 436 AH 437
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 88/207 (42%), Gaps = 39/207 (18%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y+ G V RQ FD+M + VLWT +I Y+ V +AL LF+ M+ +
Sbjct: 131 ALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTP 190
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA---- 126
D I ++++A L L + + + +I+K+ ++ D F + LI Y C ++ A
Sbjct: 191 DMVAISTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFF 250
Query: 127 -----------------------------------QKDKFSWTTMIVGLAISGNGDKALD 151
+D SW +MI G A G +AL
Sbjct: 251 QETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALT 310
Query: 152 MFSQMLRASIKPDEVAYVGVLSACTHN 178
F +M + + P+ + + LSAC +
Sbjct: 311 WFHEMEFSGVSPNALTLLSTLSACASH 337
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N+D ++++ Y G +D A Q F++ RD WT+++ G R +AL F +
Sbjct: 356 NRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSK 415
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK 100
M+ + + D+ T+V +L+A A+ LD G W ++K
Sbjct: 416 MKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEK 453
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 55/147 (37%), Gaps = 10/147 (6%)
Query: 39 LWTAMIDGYLRVNRFREALTLFQEMQT--SNIMGDEFTIVSILTARANLRALDLGEWIKT 96
+W MI + L MQ + + + T + +L A + + + GE +
Sbjct: 56 VWNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEEVHA 115
Query: 97 YIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDK 148
+ + F AL+ Y C V K Q WT +I +K
Sbjct: 116 SVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTFPEK 175
Query: 149 ALDMFSQMLRASIKPDEVAYVGVLSAC 175
AL++F M + PD VA V+SAC
Sbjct: 176 ALELFRTMREVGLTPDMVAISTVVSAC 202
>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
Length = 512
Score = 166 bits (419), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 81/182 (44%), Positives = 117/182 (64%), Gaps = 8/182 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N+DV++WTA+++ Y GQV +ARQ FD+MPE++ V W+AMI GY ++ FREAL LF +
Sbjct: 151 NRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFND 210
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
MQ + + IV LTA A L ALD G WI Y+D+N++ D G ALIDMY C
Sbjct: 211 MQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGC 270
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
VE A +D F++T++I GLA G+ A++MF++M + P+EV ++ +LSA
Sbjct: 271 VETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLSA 330
Query: 175 CT 176
C+
Sbjct: 331 CS 332
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 82/210 (39%), Gaps = 43/210 (20%)
Query: 6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT 65
+IS+ A+ ++ G + A F +P R +W M+ + L+L++ M +
Sbjct: 26 IISFCAVSAQ----GDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLS 81
Query: 66 SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY--CICADV 123
+ + + +T +L A A L L G + + + F N L+ +Y C C D
Sbjct: 82 TGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDS 141
Query: 124 -------------------------------------EKAQKDKFSWTTMIVGLAISGNG 146
E +K+ SW+ MI G A G
Sbjct: 142 ARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLF 201
Query: 147 DKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+AL++F+ M A +P+ A VG L+AC
Sbjct: 202 REALELFNDMQIAGFRPNHGAIVGALTACA 231
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D I TA++ Y G V+ A + FD+M +RD +T++I G A+ +F MQ
Sbjct: 254 DRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQ 313
Query: 65 TSNIMGDEFTIVSILTARANLRALDLG 91
+ +E T + +L+A + + ++ G
Sbjct: 314 NEGVCPNEVTFICLLSACSRVGLVEEG 340
>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
Length = 602
Score = 166 bits (419), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 117/182 (64%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
K+++ W ++ + + +++ +Q F MP+RD V W +MI G+ R+ +++EALT F EM
Sbjct: 256 KNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEM 315
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ S + + T++S L+A A+ ALD G WI Y+DKN + D ++LIDMY C D+
Sbjct: 316 EFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDI 375
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+KA ++D F+WT+++ GLA+ G G+KAL FS+M A ++PD+V VGVLSAC
Sbjct: 376 DKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSAC 435
Query: 176 TH 177
H
Sbjct: 436 AH 437
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 88/207 (42%), Gaps = 39/207 (18%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y+ G V RQ FD+M + VLWT +I Y+ V +AL LF+ M+ +
Sbjct: 131 ALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTP 190
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA---- 126
D + ++++A L L + + + +I+K+ ++ D F + LI Y C ++ A
Sbjct: 191 DMVAVSTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFF 250
Query: 127 -----------------------------------QKDKFSWTTMIVGLAISGNGDKALD 151
+D SW +MI G A G +AL
Sbjct: 251 QETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALT 310
Query: 152 MFSQMLRASIKPDEVAYVGVLSACTHN 178
F +M + + P+ + + LSAC +
Sbjct: 311 WFHEMEFSGVSPNALTLLSTLSACASH 337
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N+D ++++ Y G +D A Q F++ RD WT+++ G R +AL F +
Sbjct: 356 NRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSK 415
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK 100
M+ + + D+ T+V +L+A A+ LD G W ++K
Sbjct: 416 MKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEK 453
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 55/147 (37%), Gaps = 10/147 (6%)
Query: 39 LWTAMIDGYLRVNRFREALTLFQEMQT--SNIMGDEFTIVSILTARANLRALDLGEWIKT 96
+W MI + L MQ + + + T + +L A + + + GE +
Sbjct: 56 VWNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEEVHA 115
Query: 97 YIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDK 148
+ + F AL+ Y C V K Q WT +I +K
Sbjct: 116 SVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTFPEK 175
Query: 149 ALDMFSQMLRASIKPDEVAYVGVLSAC 175
AL++F M + PD VA V+SAC
Sbjct: 176 ALELFRTMREVGLTPDMVAVSTVVSAC 202
>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 537
Score = 166 bits (419), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 81/182 (44%), Positives = 117/182 (64%), Gaps = 8/182 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N+DV++WTA+++ Y GQV +ARQ FD+MPE++ V W+AMI GY ++ FREAL LF +
Sbjct: 176 NRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFND 235
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
MQ + + IV LTA A L ALD G WI Y+D+N++ D G ALIDMY C
Sbjct: 236 MQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGC 295
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
VE A +D F++T++I GLA G+ A++MF++M + P+EV ++ +LSA
Sbjct: 296 VETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLSA 355
Query: 175 CT 176
C+
Sbjct: 356 CS 357
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 82/210 (39%), Gaps = 43/210 (20%)
Query: 6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT 65
+IS+ A+ ++ G + A F +P R +W M+ + L+L++ M +
Sbjct: 51 IISFCAVSAQ----GDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLS 106
Query: 66 SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY--CICADV 123
+ + + +T +L A A L L G + + + F N L+ +Y C C D
Sbjct: 107 TGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDS 166
Query: 124 -------------------------------------EKAQKDKFSWTTMIVGLAISGNG 146
E +K+ SW+ MI G A G
Sbjct: 167 ARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLF 226
Query: 147 DKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+AL++F+ M A +P+ A VG L+AC
Sbjct: 227 REALELFNDMQIAGFRPNHGAIVGALTACA 256
>gi|413943789|gb|AFW76438.1| hypothetical protein ZEAMMB73_890738 [Zea mays]
Length = 529
Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ISWT +VS Y GQ+D AR F Q ++D +LWT+MI+ ++ F EAL LF
Sbjct: 207 MPERNIISWTILVSGYGIAGQLDKARVFFYQCTQKDLILWTSMINACVQHGSFEEALILF 266
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++MQ + D+FT+V++LT AN+ ALD GEWI Y + +K D G ALI+MY C
Sbjct: 267 RDMQLQRVEPDKFTVVTLLTCCANIGALDQGEWIHQYAESRNMKIDAVLGTALIEMYSKC 326
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
V+K+ KD +WT +I GLA +G KAL++F +M R+ KPD + ++GVL
Sbjct: 327 GHVDKSLQIFGRMQGKDAAAWTAIICGLATNGQASKALELFEEMQRSKTKPDGITFIGVL 386
Query: 173 SACTHN 178
SAC H
Sbjct: 387 SACCHG 392
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 93/182 (51%), Gaps = 13/182 (7%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + +++ Y G+ D AR+ FD+MP+R VLW M+ Y+R RF A+ L +M+
Sbjct: 80 DAYTACSLMEMYTMLGRADSARRVFDEMPQRFLVLWNMMMRCYIRCGRFTAAVALAVQME 139
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ D T+V+ +TA + L+LG I +Y+D + NAL+DMY +E
Sbjct: 140 SGGATPDRVTLVTAVTACSRAGDLNLGRRIHSYMD-GVFGFSLPVANALLDMYTKNGYLE 198
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+A +++ SWT ++ G I+G DKA F Q + D + + +++AC
Sbjct: 199 EAVKMFEQMPERNIISWTILVSGYGIAGQLDKARVFFYQ----CTQKDLILWTSMINACV 254
Query: 177 HN 178
+
Sbjct: 255 QH 256
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + TA++ Y G VD + Q F +M +D WTA+I G + +AL LF+EMQ
Sbjct: 312 DAVLGTALIEMYSKCGHVDKSLQIFGRMQGKDAAAWTAIICGLATNGQASKALELFEEMQ 371
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGE 92
S D T + +L+A + +D G+
Sbjct: 372 RSKTKPDGITFIGVLSACCHGGLVDEGQ 399
>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 681
Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 118/185 (63%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K V+SWT +V Y G ++ A + F++MPE+D VLW A+I G+++ R +EAL LF
Sbjct: 317 MTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALF 376
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EMQ S++ D+ T+V+ L+A + L ALD+G W+ Y+DK+ + ++ G AL+DMY C
Sbjct: 377 HEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKC 436
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+++KA ++ +WT +I GLA+ G A+ FS+M+ + PDE+ ++GVL
Sbjct: 437 GNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVL 496
Query: 173 SACTH 177
SAC H
Sbjct: 497 SACCH 501
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 102/213 (47%), Gaps = 39/213 (18%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ D+ AI+ ++ G++ AR+ FD+ RD V W ++I+GY+R EA L+ +
Sbjct: 187 DSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYK 246
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M N+M DE T++ +++A A L L LG + I++ + + NAL+DMY C +
Sbjct: 247 MGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKN 306
Query: 123 VEKA--------QKDKFSWTTMIVGLAISG------------------------------ 144
+E A +K SWTTM++G A G
Sbjct: 307 IEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQA 366
Query: 145 -NGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+AL +F +M +S+ PD++ V LSAC+
Sbjct: 367 KRSKEALALFHEMQASSVAPDKITVVNCLSACS 399
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 13/153 (8%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G + A Q F++MP R+ + WTA+I G + A++ F EM + ++
Sbjct: 427 TALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLV 486
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
DE T + +L+A + +D G ++ K + + + L+D+ +E+A++
Sbjct: 487 PDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEE 546
Query: 129 ---------DKFSWTTMIVGLAISGN---GDKA 149
D W + G I GN G++A
Sbjct: 547 LIRSMPFEPDAVVWGALFFGSRIHGNVHMGERA 579
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 9/144 (6%)
Query: 40 WTAMIDGYLRVNRFREALTLFQEM-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYI 98
W I GY+ A+ L++ M + + + D +T + A I ++
Sbjct: 122 WNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHV 181
Query: 99 DKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTMIVGLAISGNGDKAL 150
+ +D+F NA+I + C ++ A+K D SW ++I G G D+A
Sbjct: 182 IQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAF 241
Query: 151 DMFSQMLRASIKPDEVAYVGVLSA 174
D++ +M ++ PDEV +GV+SA
Sbjct: 242 DLYYKMGELNVMPDEVTMIGVVSA 265
>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 681
Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 118/185 (63%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K V+SWT +V Y G ++ A + F++MPE+D VLW A+I G+++ R +EAL LF
Sbjct: 317 MTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALF 376
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EMQ S++ D+ T+V+ L+A + L ALD+G W+ Y+DK+ + ++ G AL+DMY C
Sbjct: 377 HEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKC 436
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+++KA ++ +WT +I GLA+ G A+ FS+M+ + PDE+ ++GVL
Sbjct: 437 GNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVL 496
Query: 173 SACTH 177
SAC H
Sbjct: 497 SACCH 501
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 102/213 (47%), Gaps = 39/213 (18%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ D+ AI+ ++ G++ AR+ FD+ RD V W ++I+GY+R EA L+ +
Sbjct: 187 DSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYK 246
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M N+M DE T++ +++A A L L LG + I++ + + NAL+DMY C +
Sbjct: 247 MGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKN 306
Query: 123 VEKA--------QKDKFSWTTMIVGLAISG------------------------------ 144
+E A +K SWTTM++G A G
Sbjct: 307 IEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQA 366
Query: 145 -NGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+AL +F +M +S+ PD++ V LSAC+
Sbjct: 367 KRSKEALALFHEMQASSVAPDKITVVNCLSACS 399
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 13/153 (8%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G + A Q F++MP R+ + WTA+I G + A++ F EM + ++
Sbjct: 427 TALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLV 486
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
DE T + +L+A + +D G ++ K + + + L+D+ +E+A++
Sbjct: 487 PDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEE 546
Query: 129 ---------DKFSWTTMIVGLAISGN---GDKA 149
D W + G I GN G++A
Sbjct: 547 LIRSMPFEPDAVVWGALFFGSRIHGNVHMGERA 579
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 9/144 (6%)
Query: 40 WTAMIDGYLRVNRFREALTLFQEM-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYI 98
W I GY+ A+ L++ M + + + D +T + A I ++
Sbjct: 122 WNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHV 181
Query: 99 DKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTMIVGLAISGNGDKAL 150
+ +D+F NA+I + C ++ A+K D SW ++I G G D+A
Sbjct: 182 IQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAF 241
Query: 151 DMFSQMLRASIKPDEVAYVGVLSA 174
D++ +M ++ PDEV +GV+SA
Sbjct: 242 DLYYKMGELNVMPDEVTMIGVVSA 265
>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 606
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 115/167 (68%), Gaps = 8/167 (4%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G ++ AR+ FD+MP+ D V W+AMI GY RV R EA+ LF+EMQ + + DE T+VS+L
Sbjct: 182 GGINSARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSML 241
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKF 131
+A +L AL+LG+WI+ YI+++++ + NALIDM+ C D+ KA +K
Sbjct: 242 SACTDLGALELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIV 301
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
SWT++IVG+A+ G G +A +F +M + + PD+VA++G+LSAC+H+
Sbjct: 302 SWTSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHS 348
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 10/151 (6%)
Query: 36 DYVLWTAMIDGYLRVNRFRE-ALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWI 94
D L+ +I Y + ++ AL L+ M I+ ++FT +L A A L L+LG+ +
Sbjct: 95 DAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQTV 154
Query: 95 KTYIDKNKVKNDIFAGNALIDMYCICADV---------EKAQKDKFSWTTMIVGLAISGN 145
+ K DI N ++ MY CA E + D +W+ MI G A G
Sbjct: 155 HGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYARVGR 214
Query: 146 GDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+A+ +F +M A + PDE+ V +LSACT
Sbjct: 215 STEAVALFREMQMAEVCPDEITMVSMLSACT 245
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+K V A++ + G + A + F M E+ V WT++I G R +EA LF+E
Sbjct: 266 HKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCLFEE 325
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
M +S + D+ + +L+A ++ ++ G E+ + + K K+ I ++DMYC
Sbjct: 326 MTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHYGCMVDMYCRTG 385
Query: 122 DVEKA 126
V++A
Sbjct: 386 LVKEA 390
>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/181 (43%), Positives = 115/181 (63%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV ++ Y G + AR+ FD MP+RD + WT+MI GY + ++F +A+ LFQEM
Sbjct: 159 DVYLGNTLIDMYGRLGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMM 218
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ + D+ T+ S+L+A A+L LD+G + YI ++ V+ DI+ GN+LIDMYC C VE
Sbjct: 219 AAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVE 278
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
KA KD SWT++I GLA++G + ALD+FSQMLR ++P +VG+L AC
Sbjct: 279 KALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACA 338
Query: 177 H 177
H
Sbjct: 339 H 339
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 99/175 (56%), Gaps = 8/175 (4%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y GQ+ A++ FD M +RD V W +I GY + N+++E L LF M +NI
Sbjct: 64 ALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKA 123
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK-- 128
D T+V I+ A ++L + + + YI +N ++ D++ GN LIDMY ++ A+K
Sbjct: 124 DAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRLGNLTAARKLF 183
Query: 129 ------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
D SWT+MI G + + A+ +F +M+ A +KPD+V VLSAC H
Sbjct: 184 DNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAH 238
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 11/139 (7%)
Query: 47 YLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKND 106
Y +R +++ LF + S+ + +V++ T N+ A + I + K ++
Sbjct: 2 YSPCDRRQKSHFLFIIVALSSTIAPAALVVALTT---NINASTISSSIHVHALKLGFESY 58
Query: 107 IFAGNALIDMYCICADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLR 158
+F NALI MY +C + AQK D SW T+I G + + L +F M
Sbjct: 59 LFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTA 118
Query: 159 ASIKPDEVAYVGVLSACTH 177
A+IK D V V ++ AC+H
Sbjct: 119 ANIKADAVTMVKIILACSH 137
>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 518
Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/186 (41%), Positives = 116/186 (62%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ ++D++SW ++ YI G V++A + F MPE++ + WT+MI G++R +EAL L
Sbjct: 172 LPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLL 231
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
Q+M + I D+ T+ L+A A L AL+ G+WI TYI KNK+K D G ALIDMY C
Sbjct: 232 QQMLVAGIKPDKITLSCSLSACAGLGALEQGKWIHTYIGKNKIKIDPVLGCALIDMYVKC 291
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+++KA +K ++WT +I G A+ G G +ALD F+QM +A IKP + VL
Sbjct: 292 GEMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKGSEALDWFTQMQKAGIKPTSFTFTAVL 351
Query: 173 SACTHN 178
+AC+H
Sbjct: 352 TACSHT 357
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 84/190 (44%), Gaps = 39/190 (20%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
AR FD++ + V+W MI Y N EAL L+ +M +I + +T +L A +
Sbjct: 64 ARMVFDRISSPNTVMWNTMIRAYSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSA 123
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI------------------------- 119
L AL I I K ++++A N+L+ +Y I
Sbjct: 124 LSALAETHQIHVQIIKRGFGSEVYATNSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTM 183
Query: 120 ------CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165
C +VE A +K+ SWT+MIVG +G +AL + QML A IKPD+
Sbjct: 184 IDGYIKCGNVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDK 243
Query: 166 VAYVGVLSAC 175
+ LSAC
Sbjct: 244 ITLSCSLSAC 253
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 2 KNK---DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALT 58
KNK D + A++ Y+ G++ A F ++ ++ WTA+I G+ + EAL
Sbjct: 271 KNKIKIDPVLGCALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKGSEALD 330
Query: 59 LFQEMQTSNIMGDEFTIVSILTARANLRALDLGE 92
F +MQ + I FT ++LTA ++ ++ G+
Sbjct: 331 WFTQMQKAGIKPTSFTFTAVLTACSHTGLVEEGK 364
>gi|255564780|ref|XP_002523384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537334|gb|EEF38963.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 538
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 75/182 (41%), Positives = 119/182 (65%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
++V W A+++ Y + A+ FD MP+R+ + WTA+I GY +NR +A+ +F+ M
Sbjct: 175 RNVALWNAMLTSYAKICDMPNAQHLFDSMPQRNLISWTALISGYAHINRPHQAIAIFRTM 234
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
Q N++ DE T++++L+A A L AL+LGEWI+ YID + + ++ NALIDMY ++
Sbjct: 235 QLQNVVPDEITLLAVLSACAQLGALELGEWIRNYIDIHGLHRNVPLHNALIDMYAKSGNI 294
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
++A K +WTTMI GLA+ G G +AL+MFS+M R +KP+E+ ++ VLSAC
Sbjct: 295 KRALLIFESMKHKTIVTWTTMIAGLALHGLGTQALEMFSRMERDRVKPNEITFIAVLSAC 354
Query: 176 TH 177
+H
Sbjct: 355 SH 356
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 115/176 (65%), Gaps = 8/176 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+A++ Y G +AR F++MPE++ W MI+G++ + + EAL+LF EMQ S +
Sbjct: 277 SALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVK 336
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
GD+ T+ S+L A +L AL+LG+W+ YI+K K++ D+ G AL+DMY C +E A
Sbjct: 337 GDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRV 396
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+KD +WT +IVGLA+ G G KAL++F +M + +KPD + +VGVL+AC+H
Sbjct: 397 FQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSH 452
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 94/174 (54%), Gaps = 8/174 (4%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
+++ Y N G + AR+ FD+M + V W MI Y + + EA+ LF+ M+ +++ +
Sbjct: 178 LMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPN 237
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA----- 126
E T+V++LTA A R L+ + + YID+ + +AL+D+YC C A
Sbjct: 238 EITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFN 297
Query: 127 ---QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+K+ F W MI G + ++AL +F++M + +K D+V +L ACTH
Sbjct: 298 KMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTH 351
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 11/166 (6%)
Query: 18 NRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVS 77
+ G + AR F+Q+P ++I GY N R+A+ +Q M + D FT S
Sbjct: 86 DSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPS 145
Query: 78 ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--DKF---- 131
+ + L G+ + + K +D + N L++MY C + A+K DK
Sbjct: 146 LFKSCG---VLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKS 202
Query: 132 --SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
SW TMI A +A+ +F +M AS+KP+E+ V VL+AC
Sbjct: 203 VVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTAC 248
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 78/171 (45%), Gaps = 25/171 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV TA+V Y G ++ A + F +MPE+D + WTA+I G + +AL LF EMQ
Sbjct: 373 DVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQ 432
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
S + D T V +L A ++ ++ G I N++ + Y I +E
Sbjct: 433 MSEVKPDAITFVGVLAACSHAGLVNEG---------------IAYFNSMPNKYGIQPSIE 477
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ L +G +A D+ M A PD VG+LSAC
Sbjct: 478 H-------YGCMVDMLGRAGRIAEAEDLIQNMPMA---PDYFVLVGLLSAC 518
>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
Length = 508
Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 117/186 (62%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M DV W A+++ Y G + AR F++MP+R+ + WTA+I GY + NR +A+ LF
Sbjct: 143 MSTGDVALWNAMLNGYAKHGDLCNARDLFERMPQRNVISWTALITGYAQANRPHDAIALF 202
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK-NKVKNDIFAGNALIDMYCI 119
+ MQ N+ DE ++ LTA A L AL+LGEWI+ YID+ + +I NALIDMY
Sbjct: 203 RRMQLENVEPDEIAMLVALTACARLGALELGEWIRHYIDRLGLLTTNIPLNNALIDMYAK 262
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
D++ A K +WTTMI GLA+ G G +AL+MFS+M RA +KP+++ ++ +
Sbjct: 263 SGDIKSALQVFENMNHKTIITWTTMIAGLALHGLGTEALEMFSRMERARVKPNDITFIAI 322
Query: 172 LSACTH 177
LSAC+H
Sbjct: 323 LSACSH 328
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 26/168 (15%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G + A Q F+ M + + WT MI G EAL +F M+ + +
Sbjct: 255 ALIDMYAKSGDIKSALQVFENMNHKTIITWTTMIAGLALHGLGTEALEMFSRMERARVKP 314
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDK 130
++ T ++IL+A +++ + G W Y ++ +I Y I +E
Sbjct: 315 NDITFIAILSACSHVGLVQTGRW---YFNR------------MISRYGIEPKIEH----- 354
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC-TH 177
+ MI L +G+ +A + +QM +P+ V + +L+AC TH
Sbjct: 355 --YGCMIDLLGRAGHLKEAQTLLAQM---PFEPNAVIWGSLLAACNTH 397
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 82/176 (46%), Positives = 114/176 (64%), Gaps = 8/176 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T++V Y GQVD AR+ FDQM RD V W+AMI GY + +R REAL LF EMQ +NI
Sbjct: 264 TSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANID 323
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
+E T+VSIL++ A L AL+ G+W+ +I K ++K + G AL+D Y C VE +
Sbjct: 324 PNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEV 383
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
K+ SWT +I GLA +G G KAL+ F ML +++P++V ++GVLSAC+H
Sbjct: 384 FGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSH 439
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 102/172 (59%), Gaps = 8/172 (4%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
++ Y N G+V++AR+ FD+M ER+ W +M GY + + E + LF EM +I D
Sbjct: 165 LIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFD 224
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA----- 126
E T+VS+LTA L L+LGEWI Y+++ +K + +L+DMY C V+ A
Sbjct: 225 EVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFD 284
Query: 127 ---QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
++D +W+ MI G + + +ALD+F +M +A+I P+E+ V +LS+C
Sbjct: 285 QMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSC 336
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 83/162 (51%), Gaps = 8/162 (4%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81
+D A F Q+ E D + MI G+ EA+ LF+EM +++ DEFT IL
Sbjct: 74 MDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKV 133
Query: 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--DKFS------W 133
+ L+AL GE I I K + F N LI MY C +VE A++ D+ S W
Sbjct: 134 CSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTW 193
Query: 134 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+M G SGN ++ + +F +ML I+ DEV V VL+AC
Sbjct: 194 NSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTAC 235
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/158 (19%), Positives = 72/158 (45%), Gaps = 10/158 (6%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ Y G V+ + + F +MP ++ + WT +I G + ++AL F M N+
Sbjct: 365 TALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVE 424
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKN-KVKNDIFAGNALIDMYCICADVEKA-- 126
++ T + +L+A ++ +D G + + ++ ++ I ++D+ +E+A
Sbjct: 425 PNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQ 484
Query: 127 -------QKDKFSWTTMIVGLAISGNGDKALDMFSQML 157
Q + W T++ + N + + Q++
Sbjct: 485 FIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLI 522
>gi|297734524|emb|CBI15771.3| unnamed protein product [Vitis vinifera]
Length = 436
Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 118/184 (64%), Gaps = 9/184 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+DV+SW +++S Y+ + ++A + FD++P R+ V WT+MI GY + + F+EA+ LF+EM
Sbjct: 76 RDVVSWNSMISGYLQSHRYELALKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREM 135
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
Q D TI +L+A + AL G WI Y ++N ++ D+ A NALI MY C D+
Sbjct: 136 QIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDI 195
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGVLSA 174
+KA Q D FSW+ +I GLA++G DKAL +FSQM + + I+P+E+ ++GVL A
Sbjct: 196 QKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCA 255
Query: 175 CTHN 178
C H
Sbjct: 256 CNHG 259
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 54/156 (34%), Gaps = 41/156 (26%)
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M + + D ++ +L A A L L G I + K V D+F NALI + C
Sbjct: 1 MLRNGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGA 60
Query: 123 VEKA-----------------------------------------QKDKFSWTTMIVGLA 141
VE A ++ WT+MI G A
Sbjct: 61 VEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFDRIPHRNTVCWTSMIAGYA 120
Query: 142 ISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
S +A+++F +M D VLSAC H
Sbjct: 121 QSDLFKEAIELFREMQIGGFAADAATIACVLSACGH 156
>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
Length = 650
Score = 162 bits (411), Expect = 4e-38, Method: Composition-based stats.
Identities = 72/185 (38%), Positives = 120/185 (64%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ NK V+SWT ++ + G ++ AR FD+MPERD W A++ GY++ + +EA+ LF
Sbjct: 285 IDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALF 344
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EMQ S + +E T+V++L+A + L AL++G W+ YID++++ + G +L+DMY C
Sbjct: 345 HEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALGTSLVDMYAKC 404
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+++KA K+ +WT MI GLA G+ D+A++ F +M+ ++PDE+ ++GVL
Sbjct: 405 GNIKKAICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVL 464
Query: 173 SACTH 177
SAC H
Sbjct: 465 SACCH 469
Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 63/214 (29%), Positives = 98/214 (45%), Gaps = 41/214 (19%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM- 63
DV A V + G + +AR+ FD+ P RD V W +I GY+R REAL LF +
Sbjct: 155 DVFVVNAGVHFWSVSGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLV 214
Query: 64 -QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ DE T++ ++ A + L+LG+ + ++D V+ + NA++DMY C
Sbjct: 215 EDGKAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGS 274
Query: 123 VEKAQ--------KDKFSWTTMIVGLAISG------------------------------ 144
+E A+ K SWTTMIVG A G
Sbjct: 275 LELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQN 334
Query: 145 -NGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
G +A+ +F +M + + P+E+ V +LSAC+
Sbjct: 335 KQGKEAIALFHEMQESKVDPNEITMVNLLSACSQ 368
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 54 REALTLFQEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNA 112
R L L++ + +S+ D T +L A A L+ G + ++ K D+F NA
Sbjct: 102 RHCLPLYRALLCSSSARPDHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNA 161
Query: 113 LIDMYCICADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLR--ASIK 162
+ + + + E +D SW T+I G SG +AL++F +++ +++
Sbjct: 162 GVHFWSVSGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVR 221
Query: 163 PDEVAYVGVLSACTH 177
PDEV +G +S C
Sbjct: 222 PDEVTMIGAVSGCAQ 236
>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 624
Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 79/186 (42%), Positives = 114/186 (61%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SWT++++ Y G VD AR+ F+ MPER+ V W AMI Y++ NR EA LF
Sbjct: 181 MPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALF 240
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M+ N++ D+F S+L+A L AL+ G+WI YI+K+ ++ D +IDMYC C
Sbjct: 241 DRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKC 300
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+EKA QK SW MI GLA+ G G+ A+++F +M R + PD + +V VL
Sbjct: 301 GCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVL 360
Query: 173 SACTHN 178
SAC H+
Sbjct: 361 SACAHS 366
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 12/159 (7%)
Query: 6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT 65
VI + AI G ++ A + FD++P D ++ + GYLR R + ++ M
Sbjct: 58 VIKFCAIS----KSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLH 113
Query: 66 SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK 125
++ ++FT ++ A A++ G+ I ++ K D F+ N LI MY +E+
Sbjct: 114 KSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQ 173
Query: 126 A--------QKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
A Q+D SWT++I G + G DKA ++F M
Sbjct: 174 ARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELM 212
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 46/89 (51%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T ++ Y G ++ A + F+++P++ W MI G + A+ LF+EM+ +
Sbjct: 291 TTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVA 350
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYI 98
D T V++L+A A+ ++ G+ Y+
Sbjct: 351 PDGITFVNVLSACAHSGLVEEGKHYFQYM 379
>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 548
Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 120/182 (65%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KDV W A+V+ Y+ G++ AR+ F++MP+R+ + WT +I GY + NR EA+ LF++M
Sbjct: 186 KDVALWNAMVAGYVKVGELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKM 245
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
Q + DE ++++L+A A+L AL+LGEWI YI+K+ + + NALIDMY ++
Sbjct: 246 QLEEVEPDEIAMLAVLSACADLGALELGEWIHNYIEKHGLCRIVSLYNALIDMYAKSGNI 305
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+A QK +W+T+I LA+ G G +A+DMF +M +A ++P+EV +V +LSAC
Sbjct: 306 RRALEVFENMKQKSVITWSTVIAALALHGLGGEAIDMFLRMEKAKVRPNEVTFVAILSAC 365
Query: 176 TH 177
+H
Sbjct: 366 SH 367
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 77/196 (39%), Gaps = 39/196 (19%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G A F D L+ I + + A+ L+ ++ + D ++I S+L
Sbjct: 70 GLSSYAFSIFSNKTHPDLRLYNTAIKALSKTSSPINAIWLYTRIRIDGLRPDSYSIPSVL 129
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV---------------- 123
A L A+++G I T + + D+ +LI MY C V
Sbjct: 130 KAVVKLSAVEVGRQIHTQTVSSALDMDVNVATSLIQMYSSCGFVSDARKLFDFVGFKDVA 189
Query: 124 -----------------------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS 160
E Q++ SWTT+I G A + +A+++F +M
Sbjct: 190 LWNAMVAGYVKVGELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEE 249
Query: 161 IKPDEVAYVGVLSACT 176
++PDE+A + VLSAC
Sbjct: 250 VEPDEIAMLAVLSACA 265
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 62/124 (50%), Gaps = 7/124 (5%)
Query: 9 WTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI 68
+ A++ Y G + A + F+ M ++ + W+ +I EA+ +F M+ + +
Sbjct: 292 YNALIDMYAKSGNIRRALEVFENMKQKSVITWSTVIAALALHGLGGEAIDMFLRMEKAKV 351
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDK----NKVKNDIFAGNALIDMYCICADVE 124
+E T V+IL+A +++ +D+G + Y D+ K++ I +ID+ ++
Sbjct: 352 RPNEVTFVAILSACSHVGMVDVGRY---YFDQMQSMYKIEPKIEHYGCMIDLLARAGYLQ 408
Query: 125 KAQK 128
+AQK
Sbjct: 409 EAQK 412
>gi|357142117|ref|XP_003572465.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Brachypodium distachyon]
Length = 613
Score = 162 bits (409), Expect = 6e-38, Method: Composition-based stats.
Identities = 74/187 (39%), Positives = 121/187 (64%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVS-RYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTL 59
M+ +DV +W ++ Y G V+ AR+ FD MPER+ V WT+MI GY +V +F++A+ L
Sbjct: 259 MRQRDVATWNVMIGVMYAKCGLVEDARKVFDAMPERNVVCWTSMISGYTQVGKFKQAVKL 318
Query: 60 FQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
F++MQ S + D+ TI +++++ + ALDLG ++ Y D + + I N+LIDMY
Sbjct: 319 FRDMQISGVKADDATIATVVSSCGQMGALDLGRYVHAYCDVHGLGKGISVKNSLIDMYSK 378
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVG 170
C D++KA ++D FSWT MI+G A++G +ALD+F+QM + P+E+ ++G
Sbjct: 379 CGDIKKAHEIFRGLVKRDDFSWTVMIMGFAVNGLSGEALDLFAQMEEEGEVMPNEITFLG 438
Query: 171 VLSACTH 177
VL++C+H
Sbjct: 439 VLTSCSH 445
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 16/181 (8%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD + +++ Y+ G+V++A + F+ MPER+ M+ GY A +F
Sbjct: 168 KDAQLYNTMIAAYMEAGEVELAEELFEVMPERNTHTLMEMVGGYSARGDMDSAKHVF--- 224
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID-MYCICAD 122
+ +N + + ++++ A ++D ++ D + + D+ N +I MY C
Sbjct: 225 EMANGVVNMVLCTAMISGFAKTGSVDDA---RSVFDGMR-QRDVATWNVMIGVMYAKCGL 280
Query: 123 VEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
VE A+K + WT+MI G G +A+ +F M + +K D+ V+S+
Sbjct: 281 VEDARKVFDAMPERNVVCWTSMISGYTQVGKFKQAVKLFRDMQISGVKADDATIATVVSS 340
Query: 175 C 175
C
Sbjct: 341 C 341
Score = 43.1 bits (100), Expect = 0.038, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 10/113 (8%)
Query: 54 REALTLFQEMQTS--NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGN 111
R+A+ L+ +M + FT+ S+L A A L GE + ++ KN + D
Sbjct: 84 RDAVALYAQMHRGCPGVRPLTFTVSSVLKAAARREMLREGEQVHVHVFKNGFQTDERIAT 143
Query: 112 ALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQM 156
L+D+Y C ++ A+ KD + TMI +G + A ++F M
Sbjct: 144 TLVDLYARCGRLDDARRVFDRLLVKDAQLYNTMIAAYMEAGEVELAEELFEVM 196
>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g22410, mitochondrial; Flags: Precursor
gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
Length = 681
Score = 162 bits (409), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 119/185 (64%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
++ + ++SWT ++S Y G +D++R+ FD M E+D VLW AMI G ++ R ++AL LF
Sbjct: 318 LEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALF 377
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
QEMQTSN DE T++ L+A + L ALD+G WI YI+K + ++ G +L+DMY C
Sbjct: 378 QEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKC 437
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ +A ++ ++T +I GLA+ G+ A+ F++M+ A I PDE+ ++G+L
Sbjct: 438 GNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLL 497
Query: 173 SACTH 177
SAC H
Sbjct: 498 SACCH 502
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 39/205 (19%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A + + + G ++ AR+ FD+ P RD V W +I+GY ++ +A+ +++ M++ +
Sbjct: 196 ASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKP 255
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA---- 126
D+ T++ ++++ + L L+ G+ Y+ +N ++ I NAL+DM+ C D+ +A
Sbjct: 256 DDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIF 315
Query: 127 ----QKDKFSWTTMIVGLAISG-------------------------------NGDKALD 151
++ SWTTMI G A G G AL
Sbjct: 316 DNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALA 375
Query: 152 MFSQMLRASIKPDEVAYVGVLSACT 176
+F +M ++ KPDE+ + LSAC+
Sbjct: 376 LFQEMQTSNTKPDEITMIHCLSACS 400
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 11/148 (7%)
Query: 40 WTAMIDGYLRVNRFREALTLFQEMQTSNIM---GDEFTIVSILTARANLRALDLGEWIKT 96
W I G+ +E+ L+++M D FT + A+LR LG I
Sbjct: 121 WNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILG 180
Query: 97 YIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTMIVGLAISGNGDK 148
++ K +++ NA I M+ C D+E A+K D SW +I G G +K
Sbjct: 181 HVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEK 240
Query: 149 ALDMFSQMLRASIKPDEVAYVGVLSACT 176
A+ ++ M +KPD+V +G++S+C+
Sbjct: 241 AIYVYKLMESEGVKPDDVTMIGLVSSCS 268
>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
Length = 983
Score = 161 bits (408), Expect = 9e-38, Method: Composition-based stats.
Identities = 73/181 (40%), Positives = 113/181 (62%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D ++ +++ Y G+V AR FD+MP R+ V W+AM++GY++ REAL LF MQ
Sbjct: 276 DASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQ 335
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ D+ +V +L A A L L+ G+W+ Y+ N ++ +F G AL+DMY C +++
Sbjct: 336 ADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQ 395
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A +K+ +WTTMI GLA+ G G +AL++FSQM R +KPD++A++G L ACT
Sbjct: 396 LAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACT 455
Query: 177 H 177
H
Sbjct: 456 H 456
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 27/167 (16%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G++ +A + F M E++ + WT MI G R EAL LF +M+ +
Sbjct: 382 TALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVK 441
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
D+ + L A + +D G E + + K +K I ++D+
Sbjct: 442 PDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDL------------ 489
Query: 129 DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
LA +G ++A +M +M +KPD + + +++ C
Sbjct: 490 -----------LARNGLLNEAREMVEKM---PMKPDALIWGALMAGC 522
>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
Length = 951
Score = 161 bits (408), Expect = 9e-38, Method: Composition-based stats.
Identities = 73/181 (40%), Positives = 113/181 (62%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D ++ +++ Y G+V AR FD+MP R+ V W+AM++GY++ REAL LF MQ
Sbjct: 276 DASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQ 335
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ D+ +V +L A A L L+ G+W+ Y+ N ++ +F G AL+DMY C +++
Sbjct: 336 ADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQ 395
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A +K+ +WTTMI GLA+ G G +AL++FSQM R +KPD++A++G L ACT
Sbjct: 396 LAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACT 455
Query: 177 H 177
H
Sbjct: 456 H 456
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 27/167 (16%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G++ +A + F M E++ + WT MI G R EAL LF +M+ +
Sbjct: 382 TALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVK 441
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
D+ + L A + +D G E + + K +K I ++D+
Sbjct: 442 PDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDL------------ 489
Query: 129 DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
LA +G ++A +M +M +KPD + + +++ C
Sbjct: 490 -----------LARNGLLNEAREMVEKM---PMKPDALIWGALMAGC 522
>gi|255566233|ref|XP_002524104.1| transferase, transferring glycosyl groups, putative [Ricinus
communis]
gi|223536672|gb|EEF38314.1| transferase, transferring glycosyl groups, putative [Ricinus
communis]
Length = 810
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 118/185 (63%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M DV+SWT++++ Y G V+ AR+ FD+MPE++ V W+ MI GY + N F +A+ L+
Sbjct: 600 MSQLDVVSWTSMIAGYNKSGDVESARKLFDKMPEKNLVTWSTMISGYAKNNCFNKAIELY 659
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+Q+ + +E +VS++++ A+L AL+LGE Y+ +NK+ ++ G AL+DMY C
Sbjct: 660 NVLQSEGVQANETVMVSVISSCAHLGALELGEKAHDYVVRNKITVNLILGTALVDMYARC 719
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++KA +KD SWT +I G A+ G+ +KAL FS+M+R + P ++ + VL
Sbjct: 720 GSIDKAVQVFDELGEKDALSWTALIAGFAMHGHAEKALQYFSEMIRTGLTPRDITFTAVL 779
Query: 173 SACTH 177
SAC+H
Sbjct: 780 SACSH 784
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 46 GYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKN 105
GY ++ + + Q I D T ++ A L ++D+G ++ ++ +N
Sbjct: 513 GYSGSESPGQSFHFYIQSQRLGIFPDNLTYPFLVKACTQLGSIDMGMQAHGHVVRHGFEN 572
Query: 106 DIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
D++ N+L++MY D+ A Q D SWT+MI G SG+ + A +F +M
Sbjct: 573 DVYVQNSLVNMYSNLGDIRAASYIFQTMSQLDVVSWTSMIAGYNKSGDVESARKLFDKM 631
>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
Length = 613
Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 72/181 (39%), Positives = 112/181 (61%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+ W ++ Y+ G++++AR FD+MP+R V W MI GY + F+EA+ +F+EMQ
Sbjct: 169 DVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQ 228
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ + + T+VS+L A + L AL+LG+W+ Y +N + D G+ALIDMY C +E
Sbjct: 229 MAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIE 288
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
KA +++ +W+T+I GLA+ G LD F M RA + P +V Y+G+LSAC+
Sbjct: 289 KALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACS 348
Query: 177 H 177
H
Sbjct: 349 H 349
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 50/89 (56%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + +A++ Y G ++ A Q F+ +P+R+ V W+ +I G R ++ L F++M+
Sbjct: 270 DDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDME 329
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEW 93
+ +M + T + +L+A ++ ++ G W
Sbjct: 330 RAGVMPSDVTYIGLLSACSHAGLVNEGRW 358
>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 516
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 115/185 (62%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ +D++SW ++ YI G +D+A + F MPE++ + WT MI G++R+ +EAL+L
Sbjct: 171 LPTRDIVSWNIMIDGYIKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLL 230
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
Q+M + I D T+ L+A A L AL+ G+WI TYI+KN++K D G L DMY C
Sbjct: 231 QQMLVAGIKPDSITLSCSLSACAGLGALEQGKWIHTYIEKNEIKIDPVLGCVLTDMYVKC 290
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++EKA +K +WT +I GLAI G G +ALD F+QM +A I P+ + + +L
Sbjct: 291 GEMEKALLVFSKLEKKCVCAWTAIIGGLAIHGKGREALDWFTQMQKAGINPNSITFTAIL 350
Query: 173 SACTH 177
+AC+H
Sbjct: 351 TACSH 355
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 80/189 (42%), Gaps = 39/189 (20%)
Query: 26 RQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL 85
R FD + + V+W M+ Y N AL L+ +M +++ + +T +L A + L
Sbjct: 64 RVVFDSISSPNTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSAL 123
Query: 86 RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA------------------- 126
A + + I +I K +++A N+L+ +Y I +++ A
Sbjct: 124 SAFEETQQIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMI 183
Query: 127 --------------------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 166
+K+ SWTTMIVG G +AL + QML A IKPD +
Sbjct: 184 DGYIKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSI 243
Query: 167 AYVGVLSAC 175
LSAC
Sbjct: 244 TLSCSLSAC 252
>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 577
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/184 (42%), Positives = 116/184 (63%), Gaps = 9/184 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE-RDYVLWTAMIDGYLRVNRFREALTLFQE 62
KDV+SW AI+ Y Q+ A++ F M R+ V W MI Y++ F A+++FQ+
Sbjct: 136 KDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQ 195
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
MQ+ N+ E T+VS+L+A A+L ALD+GEWI YI ++K D+ GNALIDMYC C
Sbjct: 196 MQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGA 255
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+E A +K+ F W ++IVGL ++G G++A+ F M + IKPD V +VG+LS
Sbjct: 256 LEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSG 315
Query: 175 CTHN 178
C+H+
Sbjct: 316 CSHS 319
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 81/182 (44%), Gaps = 17/182 (9%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+I T ++ Y G + A++ F MP RD V AMI + EA LF M
Sbjct: 44 DMILQTGLLDFYAKVGDLKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMT 103
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
N + S++T L ++ + D N VK D+ + NA+ID YC +
Sbjct: 104 ERN----SCSWNSMITCYCKLGDINSA---RLMFDCNPVK-DVVSWNAIIDGYCKSKQLV 155
Query: 125 KAQ---------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
AQ ++ +W TMI G A+ MF QM ++KP EV V +LSAC
Sbjct: 156 AAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSAC 215
Query: 176 TH 177
H
Sbjct: 216 AH 217
Score = 38.9 bits (89), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 69/171 (40%), Gaps = 25/171 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+ A++ Y G ++ A F + ++ W ++I G R EA+ F M+
Sbjct: 239 DVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVME 298
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
I D T V IL+ ++ L G+ Y + ++ +Y + VE
Sbjct: 299 KEGIKPDGVTFVGILSGCSHSGLLSAGQ---RYFSE------------MLGVYGLEPGVE 343
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ L +G +AL++ M +KP+ + +L AC
Sbjct: 344 H-------YGCMVDLLGRAGYLKEALELIRAM---PMKPNSMVLGSLLRAC 384
>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 568
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 116/185 (62%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++DVISW +++ Y+ GQ++ AR+ FD MP R V WT MI GY R+ + +AL +F
Sbjct: 172 MSHRDVISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVF 231
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ I DE +I+++L A A L AL++G+WI Y DKN NALI+MY C
Sbjct: 232 REMQMVGIEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKC 291
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+++A +KD SW+TMI GLA G G +A+ +F +M + + P+E+ ++GVL
Sbjct: 292 GCIDEAWNLFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVL 351
Query: 173 SACTH 177
AC+H
Sbjct: 352 LACSH 356
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 77/200 (38%), Gaps = 42/200 (21%)
Query: 18 NRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM---QTSNIMGDEFT 74
N G V A F Q+ + + A+I Y A+++F +M T+++ D+FT
Sbjct: 54 NLGHVSYATLLFKQLLHPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFT 113
Query: 75 IVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKA 126
++ + + LG + + K NALIDMY D+ E +
Sbjct: 114 FPFVIKSCTGILCHRLGMQVHGLVYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMS 173
Query: 127 QKDKF-------------------------------SWTTMIVGLAISGNGDKALDMFSQ 155
+D SWTTMI G G ALD+F +
Sbjct: 174 HRDVISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFRE 233
Query: 156 MLRASIKPDEVAYVGVLSAC 175
M I+PDE++ + VL AC
Sbjct: 234 MQMVGIEPDEISIIAVLPAC 253
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 25/165 (15%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G +D A FDQ+ E+D + W+ MI G + EA+ LF+EM +
Sbjct: 283 ALIEMYAKCGCIDEAWNLFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAP 342
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDK 130
+E T + +L A ++ D G +K + D+ + + Y I ++E
Sbjct: 343 NEITFLGVLLACSHTGLWDEG--LKYF--------DVMSAS-----YHIEPEIEH----- 382
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ +I L SG +ALD S+M IKPD + +LS+C
Sbjct: 383 --YGCLIDLLGRSGCLGQALDTISKM---PIKPDSRIWNSLLSSC 422
>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 118/167 (70%), Gaps = 8/167 (4%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G ++ AR+ FD+M + D V W+AMI GY+RV R +A+ LF+EMQ + DE T+VS+L
Sbjct: 63 GGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVL 122
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKF 131
+A L AL+LG+W+++Y++K +V+ ++ NALIDM+ C DV+KA +++
Sbjct: 123 SACTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIV 182
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
SWT++I GLA+ G G +A+ +F +M+R+ + PD+V ++G+LSAC+H+
Sbjct: 183 SWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHS 229
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 12/120 (10%)
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC----ADVE 124
+ ++FT +L A A + L+LG+ + + K +++ N L+ MYC C +E
Sbjct: 7 LPNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIE 66
Query: 125 KAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A+K D SW+ MI G G A+++F +M + PDE+ V VLSACT
Sbjct: 67 FARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACT 126
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 16/168 (9%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
K+V A++ + G VD A F M ER+ V WT++I G R EA+ +F+EM
Sbjct: 148 KNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMHGRGVEAVAVFEEM 207
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK----VKNDIFAGNALIDMYCI 119
S + D+ + +L+A ++ +D G K Y D + + I ++DM C
Sbjct: 208 VRSGVTPDDVVFIGLLSACSHSGLVDKG---KRYFDSMRKDFSIVPKIEHYGCMVDMLCR 264
Query: 120 CADVEKAQK---------DKFSWTTMIVGLAISGNGDKALDMFSQMLR 158
V++A K + W T+I G + Q++R
Sbjct: 265 AGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGELKLGEKITRQLIR 312
>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
Length = 648
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 70/185 (37%), Positives = 120/185 (64%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ N+ +SWT ++ + G ++ AR FD+MPERD W A++ GY++ + +EA+ LF
Sbjct: 285 ISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALF 344
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EMQ S + +E T+V++L+A + L AL++G W+ YID++K+ + G +L+DMY C
Sbjct: 345 HEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVALGTSLVDMYAKC 404
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+++KA ++ +WT+MI GLA G+ D+A++ F +M+ ++PDE+ ++GVL
Sbjct: 405 GNIKKAICVFNEIPVQNALTWTSMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVL 464
Query: 173 SACTH 177
SAC H
Sbjct: 465 SACCH 469
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 62/214 (28%), Positives = 98/214 (45%), Gaps = 41/214 (19%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV A + + RG + AR+ FD+ P RD V W +I GY+R REAL LF +
Sbjct: 155 DVFVVNAAMHFWSVRGPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLA 214
Query: 65 TSN--IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ DE T++ ++ A + L+LG+ + ++D V+ + NA++DMY C
Sbjct: 215 EDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGS 274
Query: 123 VEKA--------QKDKFSWTTMIVGLAISG------------------------------ 144
+E A + SWTTMIVG A G
Sbjct: 275 LELANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQN 334
Query: 145 -NGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
G +A+ +F +M ++ + P+E+ V +LSAC+
Sbjct: 335 KQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQ 368
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 11/135 (8%)
Query: 54 REALTLFQEM-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNA 112
R L L++ + + + D T ++ A A L+ G + ++ K D+F NA
Sbjct: 102 RHCLPLYRALLHSGSARPDHLTFPFLIKACARLQYRSYGAAVLGHVQKLGFSADVFVVNA 161
Query: 113 LIDMYCICADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLR--ASIK 162
+ + + + E +D SW T+I G SG +AL++F ++ +++
Sbjct: 162 AMHFWSVRGPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVR 221
Query: 163 PDEVAYVGVLSACTH 177
PDEV +G +S C
Sbjct: 222 PDEVTVIGAVSGCAQ 236
>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Vitis vinifera]
Length = 536
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 78/184 (42%), Positives = 113/184 (61%), Gaps = 8/184 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V SW ++S Y+ G ++ AR+ F + P ++ V W AMI GY RF E L LF
Sbjct: 200 MTERNVESWNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLF 259
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++MQ + + D T+VS+L+A A++ AL GEW+ YIDKN + D F AL+DMY C
Sbjct: 260 EDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKC 319
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+EKA +KD +W ++I GL+ G+G AL +FS+ML KP+EV +V VL
Sbjct: 320 GSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVL 379
Query: 173 SACT 176
SAC+
Sbjct: 380 SACS 383
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 11/172 (6%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A VS + + A F ++P + +W +I Y ALT+F +M ++++
Sbjct: 47 ASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLP 106
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA---- 126
D++T L + + ++ G I ++ K + +D+F N LI +Y C +E A
Sbjct: 107 DKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLL 166
Query: 127 ----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV---AYVGV 171
++D SW ++ A G + A +F +M +++ YVGV
Sbjct: 167 DRMLERDVVSWNALLSAYAERGLMELACHLFDEMTERNVESWNFMISGYVGV 218
Score = 41.2 bits (95), Expect = 0.17, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 38/82 (46%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G ++ A + F+ +D W ++I G + AL +F EM
Sbjct: 310 TALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFK 369
Query: 70 GDEFTIVSILTARANLRALDLG 91
+E T V +L+A + LD G
Sbjct: 370 PNEVTFVCVLSACSRAGLLDEG 391
Score = 38.5 bits (88), Expect = 0.95, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 129 DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ + W T+I A S + AL +F QML AS+ PD+ + L +C
Sbjct: 72 NSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSC 118
>gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 532
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/181 (42%), Positives = 113/181 (62%), Gaps = 8/181 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+DVI+WTA+++ Y+ G V+ AR+ FDQMPER+ V W+AMI GY+ + FREAL LF ++
Sbjct: 172 RDVITWTALINGYVKSGHVEFARELFDQMPERNEVSWSAMITGYVHMGMFREALELFNDL 231
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
Q + + + IV LTA + L +LD G WI Y+D+N + D G AL+DMY C +
Sbjct: 232 QLTGLRPNHAGIVGALTACSYLGSLDHGRWIHAYVDRNGTELDRVLGTALVDMYAKCGCI 291
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E A KD F++T++I GLA G A+ +F +M + P+EV ++ VLSAC
Sbjct: 292 EIACSVFEKMPDKDAFAFTSLISGLANHGQSADAIQLFGRMQSEKVIPNEVTFICVLSAC 351
Query: 176 T 176
+
Sbjct: 352 S 352
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 90/213 (42%), Gaps = 41/213 (19%)
Query: 5 DVISWTAIVSRYINRGQVDI--ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
D + I+S + DI A + F +P R +W +I ++ N AL+L++
Sbjct: 41 DPFAAGKIISLFAVSSNADISHAYKLFLSLPHRTTFIWNTIIRIFVEKNENATALSLYKN 100
Query: 63 MQTSNIMGDEFTIVSILTA---------RANLRALDLGEW----------IKTYIDKNKV 103
M + + + +T +L A ++ + + LG W I Y + + V
Sbjct: 101 MLQTGFLPNNYTFSFVLRACTDNSPVGLASHAQVIKLG-WESYDFVLNGLIHLYANWSSV 159
Query: 104 K-----------NDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISG 144
+ D+ ALI+ Y VE A ++++ SW+ MI G G
Sbjct: 160 EAARKLFDVSTCRDVITWTALINGYVKSGHVEFARELFDQMPERNEVSWSAMITGYVHMG 219
Query: 145 NGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+AL++F+ + ++P+ VG L+AC++
Sbjct: 220 MFREALELFNDLQLTGLRPNHAGIVGALTACSY 252
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 50/87 (57%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + TA+V Y G ++IA F++MP++D +T++I G + +A+ LF MQ
Sbjct: 274 DRVLGTALVDMYAKCGCIEIACSVFEKMPDKDAFAFTSLISGLANHGQSADAIQLFGRMQ 333
Query: 65 TSNIMGDEFTIVSILTARANLRALDLG 91
+ ++ +E T + +L+A + + +D G
Sbjct: 334 SEKVIPNEVTFICVLSACSRMGLVDEG 360
>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 598
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 73/181 (40%), Positives = 114/181 (62%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D ++ +++ + G+V AR FD+MPER+ V W+AM++GY++ REAL +F +MQ
Sbjct: 158 DASTFNTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQ 217
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ D+ +V +L A A L AL+ G+W+ Y+ N ++ +F G AL+DMY C +V+
Sbjct: 218 AQGVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQ 277
Query: 125 ------KAQKDK--FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+ KDK +WTTMI GLA+ G G +L +FSQM + +KPD++A++G L ACT
Sbjct: 278 LGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACT 337
Query: 177 H 177
H
Sbjct: 338 H 338
Score = 60.1 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 25/166 (15%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G+V + + F+ M +++ + WT MI G R ++LTLF +M++S +
Sbjct: 264 TALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVK 323
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
D+ + L A + +D G ++F N++++ Y I +E
Sbjct: 324 PDDIAFIGALCACTHTGLVDKGR-------------ELF--NSMVNNYGIKPKIEH---- 364
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ LA +G +A DM +M +KPD + + +++ C
Sbjct: 365 ---YGCMVDLLARNGLLSEARDMVEKM---PMKPDALIWGALMAGC 404
>gi|255564188|ref|XP_002523091.1| magnesium/proton exchanger, putative [Ricinus communis]
gi|223537653|gb|EEF39276.1| magnesium/proton exchanger, putative [Ricinus communis]
Length = 1015
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 73/185 (39%), Positives = 119/185 (64%), Gaps = 12/185 (6%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ SW +I++ + G VD+AR FD MPER+ + W+ MI+G+++ ++EAL LF+EMQ
Sbjct: 146 DLPSWNSIINASVKVGLVDVARGLFDVMPERNVITWSCMINGFVKCGEYKEALALFREMQ 205
Query: 65 ---TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
++ +EFT+ S+L+A L AL+ G+W YI+K ++K DI G +LIDMY C
Sbjct: 206 MLEVRDVKPNEFTMSSVLSACGRLGALEHGKWAHAYIEKCEMKIDIVLGTSLIDMYAKCG 265
Query: 122 DVEKAQ---------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+++A+ KD +W+ MI GLA+ G G++ L++FS+M+ ++P+ V ++ VL
Sbjct: 266 SIDRARLVFDNLGSNKDVMAWSAMISGLAMHGYGEEGLELFSKMVNQGLRPNNVTFLAVL 325
Query: 173 SACTH 177
AC H
Sbjct: 326 YACVH 330
>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
Length = 594
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 117/186 (62%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SWT ++ Y + G + A FD+MP+R+ V W+A+I GY+++ + +AL LF
Sbjct: 228 MPERDVVSWTIMLVGYADAGFLSEASCLFDEMPKRNLVSWSALIKGYIQIGCYSKALELF 287
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ + + DE + ++L+A A L ALD G W+ YIDK+ +K D ALIDMY C
Sbjct: 288 KEMQVAKVKMDEVIVTTLLSACARLGALDQGRWLHMYIDKHGIKVDAHLSTALIDMYSKC 347
Query: 121 ADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ E K F W++MI GLA+ G+KA+++F++M+ I+P E+ Y+ +L
Sbjct: 348 GRIDMAWKVFQETGDKKVFVWSSMIGGLAMHSFGEKAIELFAKMIECGIEPSEITYINIL 407
Query: 173 SACTHN 178
+ACTH+
Sbjct: 408 AACTHS 413
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 32/172 (18%)
Query: 6 VISWTAIVSRYINRGQVDIA-RQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
V SW +++ Y G+V I R+ FD++ D V W +I+GY++ EA LF EM
Sbjct: 170 VHSWNSLLDFYGKVGEVGIVVRRVFDKIEGPDVVSWNCLINGYVKSGDLDEARRLFDEMP 229
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+++ +TI+ + A A L E + L D E
Sbjct: 230 ERDVV--SWTIMLVGYADAGF----LSE-----------------ASCLFD--------E 258
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+++ SW+ +I G G KAL++F +M A +K DEV +LSAC
Sbjct: 259 MPKRNLVSWSALIKGYIQIGCYSKALELFKEMQVAKVKMDEVIVTTLLSACA 310
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 12/151 (7%)
Query: 18 NRGQVDIARQCFDQMP-ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN--IMGDEFT 74
N G ++ A++ FD + R+ ++T MI Y REA + M + ++FT
Sbjct: 78 NLGSLNYAQKLFDTVDIPRNSFMYTTMIKAYANFGNPREAFAFYSRMLCDQRYVYPNDFT 137
Query: 75 IVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV---------EK 125
+ +A + + G+ + K + + + N+L+D Y +V +
Sbjct: 138 FTYVFSACSKFNGVFEGKQAHAQMIKFPFEFGVHSWNSLLDFYGKVGEVGIVVRRVFDKI 197
Query: 126 AQKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
D SW +I G SG+ D+A +F +M
Sbjct: 198 EGPDVVSWNCLINGYVKSGDLDEARRLFDEM 228
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFQEMQTSNI 68
TA++ Y G++D+A + F + ++ +W++MI G L ++ F E A+ LF +M I
Sbjct: 338 TALIDMYSKCGRIDMAWKVFQETGDKKVFVWSSMIGG-LAMHSFGEKAIELFAKMIECGI 396
Query: 69 MGDEFTIVSILTARANLRALDLG 91
E T ++IL A + +D+G
Sbjct: 397 EPSEITYINILAACTHSGLVDVG 419
>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
Length = 505
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/184 (42%), Positives = 115/184 (62%), Gaps = 10/184 (5%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDY--VLWTAMIDGYLRVNRFREALTLFQE 62
D+I T ++ Y G V+ AR FD M ER+ V W MI Y++ F A+++FQ+
Sbjct: 64 DMILQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQ 123
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
MQ+ N+ E T+VS+L+A A+L ALD+GEWI YI ++K D+ GNALIDMYC C
Sbjct: 124 MQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGA 183
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+E A +K+ F W ++IVGL ++G G++A+ F M + IKPD V +VG+LS
Sbjct: 184 LEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSG 243
Query: 175 CTHN 178
C+H+
Sbjct: 244 CSHS 247
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 10/131 (7%)
Query: 57 LTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116
L + M ++++ + + IL + A LGE I K + D+ L+D
Sbjct: 15 LGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDF 74
Query: 117 YCICADVEKAQ----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 166
Y VE+A+ + +W TMI G A+ MF QM ++KP EV
Sbjct: 75 YAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEV 134
Query: 167 AYVGVLSACTH 177
V +LSAC H
Sbjct: 135 TMVSLLSACAH 145
Score = 38.5 bits (88), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 69/171 (40%), Gaps = 25/171 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+ A++ Y G ++ A F + ++ W ++I G R EA+ F M+
Sbjct: 167 DVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVME 226
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
I D T V IL+ ++ L G+ Y + ++ +Y + VE
Sbjct: 227 KEGIKPDGVTFVGILSGCSHSGLLSAGQ---RYFSE------------MLGVYGLEPGVE 271
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ L +G +AL++ M +KP+ + +L AC
Sbjct: 272 H-------YGCMVDLLGRAGYLKEALELIRAM---PMKPNSMVLGSLLRAC 312
>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 640
Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 118/182 (64%), Gaps = 8/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D SW ++ Y+ G AR+ F+ MP+RD V W+ MI+GY++ +RF+E L LFQ+M
Sbjct: 201 DGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMM 260
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
I +E +V+ L+A A+L A++ G+WI+ Y+++ V+ + G ALIDMY C VE
Sbjct: 261 GEKIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVE 320
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+A +K+ +W+ MI GLAI+G G AL++FSQM +KP+EV ++G+L+AC+
Sbjct: 321 RALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACS 380
Query: 177 HN 178
H+
Sbjct: 381 HS 382
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 77/199 (38%), Gaps = 40/199 (20%)
Query: 19 RGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-QTSNIMGDEFTIVS 77
G + AR F ++ + D + +I Y +A+ + EM ++S + D T
Sbjct: 82 HGSIPYARFLFYRIRKPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPL 141
Query: 78 ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA----------- 126
+L A + + +L LGE I +++ K +++ N L+ MY C +E A
Sbjct: 142 LLKACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECD 201
Query: 127 ----------------------------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158
+D SW+ MI G + L +F M+
Sbjct: 202 GASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMG 261
Query: 159 ASIKPDEVAYVGVLSACTH 177
I+P+E V LSAC H
Sbjct: 262 EKIEPNESVLVNALSACAH 280
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ Y G V+ A + F +M E++ + W+AMI+G + ++AL LF +M+ +
Sbjct: 307 TALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVK 366
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127
+E T + IL A ++ + +D G + + +K + ++D+Y +++AQ
Sbjct: 367 PNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQ 425
>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1026
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 115/186 (61%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K ++SWT +V Y G +D+AR+ ++PE+ V W A+I G ++ + +EAL LF
Sbjct: 320 MAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALF 379
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EMQ I D+ T+V+ L+A + L ALD+G WI YI+++K+ D+ G AL+DMY C
Sbjct: 380 HEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKC 439
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ +A Q++ +WT +I GLA+ GN AL FS+M+ I PDE+ ++GVL
Sbjct: 440 GNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVL 499
Query: 173 SACTHN 178
SAC H
Sbjct: 500 SACCHG 505
Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 105/212 (49%), Gaps = 39/212 (18%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ A ++ ++ G++ +A F++ RD V W +MI G ++ EA+ +++EM+
Sbjct: 192 DIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEME 251
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV- 123
+ +E T++ ++++ + ++ L+LG+ YI ++ ++ I NAL+DMY C ++
Sbjct: 252 AEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELL 311
Query: 124 -------EKAQKDKFSWTTMIVGLA--------------------------ISG-----N 145
AQK SWTTM++G A ISG
Sbjct: 312 TARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQ 371
Query: 146 GDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
G +AL +F +M +I+PD+V V LSAC+
Sbjct: 372 GKEALALFHEMQIRTIEPDKVTMVNCLSACSQ 403
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 72/166 (43%), Gaps = 9/166 (5%)
Query: 21 QVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM-GDEFTIVSIL 79
++D + ++ E + W A I GY+ L++ M + D T +L
Sbjct: 106 ELDYCTRILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLL 165
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKF 131
+ LG + ++ K + DIF NA I M C ++ A +D
Sbjct: 166 KGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLV 225
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+W +MI G G +A+ ++ +M ++P+E+ +G++S+C+
Sbjct: 226 TWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQ 271
>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
small; Tetratricopeptide-like helical [Medicago
truncatula]
Length = 971
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 115/186 (61%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K ++SWT +V Y G +D+AR+ ++PE+ V W A+I G ++ + +EAL LF
Sbjct: 320 MAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALF 379
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EMQ I D+ T+V+ L+A + L ALD+G WI YI+++K+ D+ G AL+DMY C
Sbjct: 380 HEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKC 439
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ +A Q++ +WT +I GLA+ GN AL FS+M+ I PDE+ ++GVL
Sbjct: 440 GNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVL 499
Query: 173 SACTHN 178
SAC H
Sbjct: 500 SACCHG 505
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 105/212 (49%), Gaps = 39/212 (18%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ A ++ ++ G++ +A F++ RD V W +MI G ++ EA+ +++EM+
Sbjct: 192 DIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEME 251
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV- 123
+ +E T++ ++++ + ++ L+LG+ YI ++ ++ I NAL+DMY C ++
Sbjct: 252 AEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELL 311
Query: 124 -------EKAQKDKFSWTTMIVGLA--------------------------ISG-----N 145
AQK SWTTM++G A ISG
Sbjct: 312 TARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQ 371
Query: 146 GDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
G +AL +F +M +I+PD+V V LSAC+
Sbjct: 372 GKEALALFHEMQIRTIEPDKVTMVNCLSACSQ 403
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 72/166 (43%), Gaps = 9/166 (5%)
Query: 21 QVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM-GDEFTIVSIL 79
++D + ++ E + W A I GY+ L++ M + D T +L
Sbjct: 106 ELDYCTRILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLL 165
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKF 131
+ LG + ++ K + DIF NA I M C ++ A +D
Sbjct: 166 KGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLV 225
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+W +MI G G +A+ ++ +M ++P+E+ +G++S+C+
Sbjct: 226 TWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQ 271
>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 624
Score = 159 bits (402), Expect = 5e-37, Method: Composition-based stats.
Identities = 77/182 (42%), Positives = 115/182 (63%), Gaps = 9/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV ++++ Y GQ++ AR+ FD++P R+ V WT+MI GY + + F+EA+ LF+EMQ
Sbjct: 265 DVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQ 324
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
D TI +L+A + AL G WI Y ++N ++ D+ A NALI MY C D++
Sbjct: 325 IGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQ 384
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGVLSAC 175
KA Q D FSW+ +I GLA++G DKAL +FSQM + + I+P+E+ ++GVL AC
Sbjct: 385 KALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCAC 444
Query: 176 TH 177
H
Sbjct: 445 NH 446
Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats.
Identities = 66/184 (35%), Positives = 96/184 (52%), Gaps = 11/184 (5%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFQE 62
DV A++S + + G V+ AR FD +P RD V W +MI GYL+ +R+ AL +F E
Sbjct: 161 DVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFWE 220
Query: 63 M-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
+ ++ DE T+VS L+ L LDLG+ I + D+F G++LIDMY C
Sbjct: 221 LLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCG 280
Query: 122 DVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+E A+K + WT+MI G A S +A+++F +M D VLS
Sbjct: 281 QIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLS 340
Query: 174 ACTH 177
AC H
Sbjct: 341 ACGH 344
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/162 (30%), Positives = 73/162 (45%), Gaps = 11/162 (6%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
+R F Q+ + + W M Y R + E + L+ M + + D ++ +L A A
Sbjct: 80 SRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACAR 139
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KDKFSWT 134
L L G I + K V D+F NALI + C VE A+ +D SW
Sbjct: 140 LSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWN 199
Query: 135 TMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGVLSAC 175
+MI G S + AL +F ++L S+ PDEV V LS C
Sbjct: 200 SMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVC 241
>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 953
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 77/181 (42%), Positives = 113/181 (62%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ISW +++S Y+ VD A+ FD MPE+D V W++MI GY + + F E L LFQEMQ
Sbjct: 441 DLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQ 500
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
S DE T+VS+++A A L AL+ G+W+ YI +N + ++ G LIDMY C VE
Sbjct: 501 MSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVE 560
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A +K +W +I+GLA++G + +LDMFS M + + P+E+ ++GVL AC
Sbjct: 561 TALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACR 620
Query: 177 H 177
H
Sbjct: 621 H 621
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 98/214 (45%), Gaps = 39/214 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + +I+ +++ + RG V A + FD+M E+D V W+A+I + + + EA+ F
Sbjct: 305 MPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTF 364
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M +M DE VS L+A ANL +++G+ I + K ++ I NALI MY C
Sbjct: 365 VGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKC 424
Query: 121 ADVEKA---------------------------------------QKDKFSWTTMIVGLA 141
D+ A +KD SW++MI G A
Sbjct: 425 GDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYA 484
Query: 142 ISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ D+ L +F +M + KPDE V V+SAC
Sbjct: 485 QNDLFDETLALFQEMQMSGFKPDETTLVSVISAC 518
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 76/161 (47%), Gaps = 21/161 (13%)
Query: 14 SRYINRGQVDIARQCFDQ-----MPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI 68
SR +N+G + + R + Q MP + A Y++ N A TL++ M ++ +
Sbjct: 158 SRSVNKGFLLLMR--YPQANTWKMPAK------ASRRAYIQTNSPHFAFTLYKSMLSNYL 209
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV----- 123
D +T ++ A + R+ + + ++ K +D++ N LI+ + +C+++
Sbjct: 210 GADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACR 269
Query: 124 ---EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI 161
E + D SW +++ G GN ++A ++ QM SI
Sbjct: 270 VFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSI 310
>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 513
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 118/186 (63%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW +VS Y G ++ AR+ FDQM ERD + W AMI GY++ ++ +A+ +F
Sbjct: 174 MPLRDVVSWNTMVSGYCLCGDLESARRVFDQMLERDVISWNAMIGGYVQNGKYSDAIEVF 233
Query: 61 QEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
EMQ ++ D+ T+VS+L+A A++ ALD G WI ++ +++ GNALIDMY
Sbjct: 234 HEMQKVGGVVPDDVTLVSVLSACAHVGALDFGRWIDRFVGWRGRGLNLYLGNALIDMYAK 293
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C +E+A ++D SW+TMI G G+ D+A +S+ML +KP+EV ++G+
Sbjct: 294 CGTMEEARRIFDGMRERDVISWSTMICGSGTHGDADEAFGYYSKMLECGVKPNEVTFMGL 353
Query: 172 LSACTH 177
LSAC+H
Sbjct: 354 LSACSH 359
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 83/195 (42%), Gaps = 42/195 (21%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF--QEMQTSNIMGDEFTIVSILTAR 82
A+ F Q+P + W A+I ++ + AL F Q S +E+ S++ A
Sbjct: 64 AQLIFAQLPNPNVFSWNAIIKAHINCGAWEHALNCFNRQLSLPSAPNPNEYIYTSLIKAC 123
Query: 83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM-------------------------- 116
A L A+ G + + K+ + N+I G +L+DM
Sbjct: 124 AGLEAIADGLKVHAVVIKSGLDNNIHLGTSLVDMYFKFREPASAGQVFDEMPLRDVVSWN 183
Query: 117 -----YCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLR-ASIK 162
YC+C D+E A ++D SW MI G +G A+++F +M + +
Sbjct: 184 TMVSGYCLCGDLESARRVFDQMLERDVISWNAMIGGYVQNGKYSDAIEVFHEMQKVGGVV 243
Query: 163 PDEVAYVGVLSACTH 177
PD+V V VLSAC H
Sbjct: 244 PDDVTLVSVLSACAH 258
>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Vitis vinifera]
Length = 631
Score = 159 bits (401), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 112/181 (61%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+ W ++ Y+ G++++AR FD+MP+R V W MI GY + F+EA+ +F+EMQ
Sbjct: 192 DVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQ 251
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ + + T+VS+L A + L AL+LG+W+ Y +N + D G+ALIDMY C +E
Sbjct: 252 MAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIE 311
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
KA +++ +W+T+I GLA+ G LD F M RA + P +V Y+G+LSAC+
Sbjct: 312 KALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACS 371
Query: 177 H 177
H
Sbjct: 372 H 372
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 48/85 (56%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+A++ Y G ++ A Q F+ +P+R+ V W+ +I G R ++ L F++M+ + +M
Sbjct: 298 SALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVM 357
Query: 70 GDEFTIVSILTARANLRALDLGEWI 94
+ T + +L+A ++ ++ G W
Sbjct: 358 PSDVTYIGLLSACSHAGLVNEGRWF 382
>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 640
Score = 159 bits (401), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 121/185 (65%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D++SW ++ + + G V A++ FD+ ERD + W++MI Y + + EAL LF
Sbjct: 197 MPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLF 256
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EMQ +N++ D+ T+VS+L+A ++ AL +G+ I I++N+++ D+ G +L+DMY C
Sbjct: 257 HEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKC 316
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
D++ + +D F+W+ MI+GLA G G+ ALD FS+M+ IKP++V ++GVL
Sbjct: 317 GDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVL 376
Query: 173 SACTH 177
SAC+H
Sbjct: 377 SACSH 381
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 88/222 (39%), Gaps = 71/222 (31%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG-DEFTIVSILTARA 83
AR FD++P D +W MI YL +E+++LF +M+ + D +++ ++ A
Sbjct: 57 ARSVFDEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACG 116
Query: 84 NLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA----------------- 126
L+ G+ + T + K + +D+F ALI+MY D+E A
Sbjct: 117 RLKDPGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNV 176
Query: 127 ----------------------QKDKFSWTTMIVGLAISGN------------------- 145
++D SW TMI G A G+
Sbjct: 177 LLAEYVRVGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISW 236
Query: 146 ------------GDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
++AL +F +M A++ PD+V V VLSAC
Sbjct: 237 SSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSAC 278
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 25/166 (15%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T++V Y G +D + + F+ M RD W+AMI G AL F +M + +I
Sbjct: 307 TSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIK 366
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
++ T + +L+A +++ +D G T + K ++ + I+ Y D+
Sbjct: 367 PNDVTFIGVLSACSHIGLVDEGWTYFTSMSK------VYDVSPKIEHYGCVVDI------ 414
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
L +G +A+++ M PD + + +L AC
Sbjct: 415 ----------LGRAGRLQEAMELIKSM---PFAPDAIVWRALLGAC 447
>gi|356567012|ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g44880-like [Glycine max]
Length = 599
Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 115/185 (62%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ ++V+SWT++VS Y G V+ A+ FD MPE++ W AMI GY + R +AL LF
Sbjct: 248 MRERNVVSWTSMVSGYCGNGDVENAKLMFDLMPEKNVFTWNAMIGGYCQNRRSHDALELF 307
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQT+++ +E T+V +L A A+L ALDLG WI + + K+ G ALIDMY C
Sbjct: 308 REMQTASVEPNEVTVVCVLPAVADLGALDLGRWIHRFALRKKLDRSARIGTALIDMYAKC 367
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ KA +++ SW +I G A++G +AL++F++M+ P+EV +GVL
Sbjct: 368 GEITKAKLAFEGMTERETASWNALINGFAVNGCAKEALEVFARMIEEGFGPNEVTMIGVL 427
Query: 173 SACTH 177
SAC H
Sbjct: 428 SACNH 432
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 89/178 (50%), Gaps = 16/178 (8%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ TA+V Y+ G + AR+ FD+M R V WTA+I GY R EA LF EM+
Sbjct: 159 DLYVATALVDMYVKFGVLGSARKVFDEMSVRSKVSWTAVIVGYARCGDMSEARRLFDEME 218
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+I+ +++ + + L + ++ + +N + + +++ YC DVE
Sbjct: 219 DRDIVA----FNAMIDGYVKMGCVGLA---RELFNEMRERN-VVSWTSMVSGYCGNGDVE 270
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
A +K+ F+W MI G + AL++F +M AS++P+EV V VL A
Sbjct: 271 NAKLMFDLMPEKNVFTWNAMIGGYCQNRRSHDALELFREMQTASVEPNEVTVVCVLPA 328
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 10/145 (6%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM--QTSNIMGDEFTIVSIL 79
++ AR+ F+ RD L +MI + +F + TLF+++ Q D +T +++
Sbjct: 73 INHARRFFNATHTRDTFLCNSMIAAHFAARQFSQPFTLFRDLRRQAPPFTPDGYTFTALV 132
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKF 131
A A G + + KN V D++ AL+DMY + A+K K
Sbjct: 133 KGCATRVATGEGTLLHGMVLKNGVCFDLYVATALVDMYVKFGVLGSARKVFDEMSVRSKV 192
Query: 132 SWTTMIVGLAISGNGDKALDMFSQM 156
SWT +IVG A G+ +A +F +M
Sbjct: 193 SWTAVIVGYARCGDMSEARRLFDEM 217
>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 158 bits (400), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 78/186 (41%), Positives = 110/186 (59%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD++SWT ++ Y G+ D A+ FD MP +D W A+I Y + + +EAL LF
Sbjct: 298 MPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELF 357
Query: 61 QEMQTSNIM-GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
E+Q S DE T+VS L+A A L A+DLG WI YI K +K + +LIDMYC
Sbjct: 358 HELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCK 417
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C D++KA +KD F W+ MI GLA+ G+G A+ +FS+M +KP+ V + +
Sbjct: 418 CGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNI 477
Query: 172 LSACTH 177
L AC+H
Sbjct: 478 LCACSH 483
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 103/212 (48%), Gaps = 40/212 (18%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV +++ Y G++ + + F +P RD V W +MI +++ EAL LFQEM+
Sbjct: 170 DVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEME 229
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
T N+ + T+V +L+A A + G W+ +YI++N++ + NA++DMY C VE
Sbjct: 230 TQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVE 289
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGD----------------------------- 147
A +KD SWTTM+VG A G D
Sbjct: 290 DAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGK 349
Query: 148 --KALDMFSQM-LRASIKPDEVAYVGVLSACT 176
+AL++F ++ L + KPDEV V LSAC
Sbjct: 350 PKEALELFHELQLSKTAKPDEVTLVSTLSACA 381
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 9/164 (5%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-QTSNIMGDEFTIVSILT 80
+D A+Q FDQ+P + W +I Y + ++L +F M S D+FT ++
Sbjct: 85 LDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIK 144
Query: 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD--------VEKAQKDKFS 132
A + L L G+ + K + +D+F N+LI Y C + V ++D S
Sbjct: 145 AASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVS 204
Query: 133 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
W +MI G ++AL++F +M ++KP+ + VGVLSAC
Sbjct: 205 WNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACA 248
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 73/167 (43%), Gaps = 25/167 (14%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T+++ Y G + A F + +D +W+AMI G ++A+ LF +MQ +
Sbjct: 409 TSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVK 468
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
+ T +IL A +++ ++ G +T+ ++ ++ + G + Y D+
Sbjct: 469 PNAVTFTNILCACSHVGLVEEG---RTFFNQMELVYGVLPG---VKHYACMVDI------ 516
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
L +G ++A+++ +M A P + +L ACT
Sbjct: 517 ----------LGRAGLLEEAVELIEKMPMA---PAASVWGALLGACT 550
>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 809
Score = 158 bits (400), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 77/181 (42%), Positives = 113/181 (62%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ISW +++S Y+ VD A+ FD MPE+D V W++MI GY + + F E L LFQEMQ
Sbjct: 306 DLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQ 365
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
S DE T+VS+++A A L AL+ G+W+ YI +N + ++ G LIDMY C VE
Sbjct: 366 MSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVE 425
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A +K +W +I+GLA++G + +LDMFS M + + P+E+ ++GVL AC
Sbjct: 426 TALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACR 485
Query: 177 H 177
H
Sbjct: 486 H 486
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 98/214 (45%), Gaps = 39/214 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + +I+ +++ + RG V A + FD+M E+D V W+A+I + + + EA+ F
Sbjct: 170 MPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTF 229
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M +M DE VS L+A ANL +++G+ I + K ++ I NALI MY C
Sbjct: 230 VGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKC 289
Query: 121 ADVEKA---------------------------------------QKDKFSWTTMIVGLA 141
D+ A +KD SW++MI G A
Sbjct: 290 GDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYA 349
Query: 142 ISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ D+ L +F +M + KPDE V V+SAC
Sbjct: 350 QNDLFDETLALFQEMQMSGFKPDETTLVSVISAC 383
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 73/149 (48%), Gaps = 8/149 (5%)
Query: 21 QVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80
+D R+ F+ + + +W MI Y++ N A TL++ M ++ + D +T ++
Sbjct: 27 HIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQ 86
Query: 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKFS 132
A + R+ + + ++ K +D++ N LI+ + +C+++ E + D S
Sbjct: 87 ACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVS 146
Query: 133 WTTMIVGLAISGNGDKALDMFSQMLRASI 161
W +++ G GN ++A ++ QM SI
Sbjct: 147 WNSILAGYIEIGNVEEAKHIYHQMPERSI 175
>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 808
Score = 158 bits (400), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 78/184 (42%), Positives = 113/184 (61%), Gaps = 8/184 (4%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
N D ISW +++S + G V+ AR FD MPE+D V W+A+I GY + + F E L LF
Sbjct: 366 HNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFH 425
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
EMQ I DE +VS+++A +L ALD G+W+ YI KN +K ++ G L+DMY C
Sbjct: 426 EMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCG 485
Query: 122 DVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
VE A +K SW +I+GLA++G +++LDMFS+M + P+E+ ++GVL
Sbjct: 486 CVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLG 545
Query: 174 ACTH 177
AC H
Sbjct: 546 ACRH 549
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 107/243 (44%), Gaps = 70/243 (28%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPER----------------------------- 35
D +SW +I++ Y+ +G V+ A+ FDQMP+R
Sbjct: 206 DSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMD 265
Query: 36 --DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEW 93
D V W+A+I GY + + EAL +F EM + + DE +VS+L+A A+L + G+
Sbjct: 266 EKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKM 325
Query: 94 IKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTMIVGLAISGN 145
I + + +++ + NALI MY ++ AQK D+ SW +MI G G+
Sbjct: 326 IHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGS 385
Query: 146 GDKA-------------------------------LDMFSQMLRASIKPDEVAYVGVLSA 174
+KA L +F +M I+PDE V V+SA
Sbjct: 386 VEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISA 445
Query: 175 CTH 177
CTH
Sbjct: 446 CTH 448
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 80/149 (53%), Gaps = 10/149 (6%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81
+D + Q FD++ + +W M+ Y++ N +AL L++ M +N+ D +T ++ A
Sbjct: 91 LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQA 150
Query: 82 RANLRALDL-GEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFS 132
A +R L+ G+ I ++ K +D++ N LI+MY +C ++ A+K D S
Sbjct: 151 CA-VRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVS 209
Query: 133 WTTMIVGLAISGNGDKALDMFSQMLRASI 161
W +++ G G+ ++A +F QM + +I
Sbjct: 210 WNSILAGYVKKGDVEEAKLIFDQMPQRNI 238
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 31/175 (17%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ DV +++ Y G + AR+ FD+ P D V W +++ GY++ EA +F +
Sbjct: 173 DSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQ 232
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M NI+ IV L + +G+ ++ + K+ N
Sbjct: 233 MPQRNIVASNSMIV--LLGK-------MGQVMEAW----KLFN----------------- 262
Query: 123 VEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
E +KD SW+ +I G +G ++AL MF +M ++ DEV V VLSAC H
Sbjct: 263 -EMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAH 316
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 67/126 (53%), Gaps = 3/126 (2%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFQEM 63
+VI T ++ Y+ G V+ A + F+ M E+ W A+I G L VN E +L +F EM
Sbjct: 470 NVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIG-LAVNGLVERSLDMFSEM 528
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGE-WIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ + ++ +E T + +L A ++ +D G + I+K+ ++ ++ ++D+
Sbjct: 529 KNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGL 588
Query: 123 VEKAQK 128
+ +A+K
Sbjct: 589 LNEAEK 594
>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
Length = 599
Score = 158 bits (400), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 112/186 (60%), Gaps = 23/186 (12%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NK ++SWT ++ FD+MP++D V W AMI GY+ NR +EAL LF
Sbjct: 241 MTNKTMVSWTTML---------------FDEMPDKDVVPWNAMIGGYVHANRGKEALALF 285
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EMQ NI DE T+VS L+A + L ALD+G WI YI+K+++ ++ G ALIDMY C
Sbjct: 286 NEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKC 345
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ KA ++ +WT +I GLA+ GN A+ FS+M+ S+ PDEV ++G+L
Sbjct: 346 GKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLL 405
Query: 173 SACTHN 178
SAC H
Sbjct: 406 SACCHG 411
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 102/199 (51%), Gaps = 24/199 (12%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ D+ A++ ++ G +D AR+ FD+ RD V W +MI+GY+R EAL ++E
Sbjct: 111 DSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYRE 170
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M+ I DE T++ ++++ A L LDLG YI++N +K + NAL+DMY C +
Sbjct: 171 MKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGN 230
Query: 123 VEKAQ------------------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158
+E A+ KD W MI G + G +AL +F++M
Sbjct: 231 LESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQA 290
Query: 159 ASIKPDEVAYVGVLSACTH 177
+I PDEV V LSAC+
Sbjct: 291 MNINPDEVTMVSCLSACSQ 309
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 9/147 (6%)
Query: 40 WTAMIDGYLRVNRFREALTLFQE-MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYI 98
W I G+L REA+ L++ +Q D +T + A A L + +G I ++
Sbjct: 46 WNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHV 105
Query: 99 DKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTMIVGLAISGNGDKAL 150
+DIF NA+I + C D++ A+K D SW +MI G G +AL
Sbjct: 106 LHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEAL 165
Query: 151 DMFSQMLRASIKPDEVAYVGVLSACTH 177
+ + +M IKPDEV +GV+S+C
Sbjct: 166 NFYREMKVEGIKPDEVTMIGVVSSCAQ 192
>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 695
Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 77/176 (43%), Positives = 112/176 (63%), Gaps = 8/176 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T+++ Y GQVD AR+ FD+M +RD V W+AMI GY + +R +EAL LF EMQ N+
Sbjct: 261 TSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVY 320
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-- 127
+E T+VS+L + A L A + G+W+ YI K K+K + G LID Y C ++++
Sbjct: 321 PNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEV 380
Query: 128 ------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
K+ F+WT +I GLA +G G AL+ FS ML +KP++V ++GVLSAC+H
Sbjct: 381 FKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSH 436
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 95/172 (55%), Gaps = 8/172 (4%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
++ Y N GQ+ +AR FD MPER V W +M+ GY + + E + LF+++ I D
Sbjct: 162 LIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFD 221
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--- 128
+ T++S+L A L L++GE I YI ++ + +LIDMY C V+ A+K
Sbjct: 222 DVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFD 281
Query: 129 -----DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
D +W+ MI G A + +AL++F +M + ++ P+EV V VL +C
Sbjct: 282 EMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSC 333
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 8/162 (4%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81
+D A F+ + + + + MI G AL LF++M ++ D+FT S+L A
Sbjct: 71 IDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKA 130
Query: 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSW 133
+ ++AL GE + I K+ K++ F N LI MY C + A ++ +W
Sbjct: 131 CSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAW 190
Query: 134 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+M+ G +G D+ + +F ++L I+ D+V + VL AC
Sbjct: 191 NSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMAC 232
>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic [Vitis vinifera]
gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 117/182 (64%), Gaps = 8/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+++W +++ G+VD +R+ FD+MP R+ V W +MI GY+R R REAL LF +MQ
Sbjct: 190 DIVAWNSMIMGLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQ 249
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
I EFT+VS+L A A L AL GEWI YI KN + ++ ++IDMYC C +
Sbjct: 250 EERIKPSEFTMVSLLNASARLGALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIG 309
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+A K SW TMI+GLA++G ++A+ +FS++ ++++PD+V +VGVL+AC
Sbjct: 310 EAFQVFEMAPLKGLSSWNTMILGLAMNGCENEAIQLFSRLECSNLRPDDVTFVGVLTACN 369
Query: 177 HN 178
++
Sbjct: 370 YS 371
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 77/195 (39%), Gaps = 40/195 (20%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ-TSNIMGDEFTIVSI 78
G ++ A F Q+ + W +I G+ + + A++LF +M S++ T S+
Sbjct: 72 GDINYAYLVFTQIHSPNLFSWNTIIRGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSV 131
Query: 79 LTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC--------ADVEKAQKDK 130
A A L G + + K ++ D F N +I MY C A E+ D
Sbjct: 132 FKAYAQLGLAHYGAQLHGRVIKLGLQFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDI 191
Query: 131 FSWTTMIVGLAISGNGD-------------------------------KALDMFSQMLRA 159
+W +MI+GLA G D +ALD+F QM
Sbjct: 192 VAWNSMIMGLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEE 251
Query: 160 SIKPDEVAYVGVLSA 174
IKP E V +L+A
Sbjct: 252 RIKPSEFTMVSLLNA 266
>gi|297738897|emb|CBI28142.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/186 (41%), Positives = 115/186 (61%), Gaps = 33/186 (17%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K VI WT++VS Y+N GQ+D AR+ F++ P RD VLWTAMI+GY++ NRF +A+ LF
Sbjct: 228 MPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALF 287
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ + D FT+V++LT D G ALI+MY C
Sbjct: 288 REMQIKRVSPDRFTLVALLT-------------------------DAVVGTALIEMYAKC 322
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+EK+ +KD SWT++I GLA++G KAL++F++M++ +KPD++ ++GVL
Sbjct: 323 GFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVL 382
Query: 173 SACTHN 178
SAC+H
Sbjct: 383 SACSHG 388
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 8/146 (5%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G + A + F+ + ++ +I + + FR+A+ LF++++ + D FT +
Sbjct: 80 GNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVF 139
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKF 131
A L + GE + ++ K+ ++ D + N+L+DMY V E Q+D
Sbjct: 140 KAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVV 199
Query: 132 SWTTMIVGLAISGNGDKALDMFSQML 157
SW +I G + A+D+F Q+
Sbjct: 200 SWNVLISGYVKCRRYEDAVDVFRQIF 225
>gi|15228028|ref|NP_181820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206274|sp|Q9SJG6.1|PP200_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g42920, chloroplastic; Flags: Precursor
gi|4512663|gb|AAD21717.1| hypothetical protein [Arabidopsis thaliana]
gi|20197867|gb|AAM15291.1| hypothetical protein [Arabidopsis thaliana]
gi|110738441|dbj|BAF01146.1| hypothetical protein [Arabidopsis thaliana]
gi|330255093|gb|AEC10187.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 121/182 (66%), Gaps = 8/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV++W +++ + G +D A+ FD+MP+R+ V W +MI G++R RF++AL +F+EMQ
Sbjct: 191 DVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQ 250
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
++ D FT+VS+L A A L A + G WI YI +N+ + + ALIDMYC C +E
Sbjct: 251 EKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIE 310
Query: 125 K-------AQKDKFS-WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+ A K + S W +MI+GLA +G ++A+D+FS++ R+ ++PD V+++GVL+AC
Sbjct: 311 EGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACA 370
Query: 177 HN 178
H+
Sbjct: 371 HS 372
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 116/181 (64%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+SWT++V+ YI G V AR+ FD+MPE++ V W+ MI GY + + F +A+ L+ +Q
Sbjct: 178 DVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQ 237
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ + +E +VS++ + A+L AL+LGE YI +NK+ ++ G AL+DMY C ++
Sbjct: 238 SEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSID 297
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
KA +D SWTT+I G A+ G +KAL+ FS+M +A + P E+ + VLSAC+
Sbjct: 298 KAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACS 357
Query: 177 H 177
H
Sbjct: 358 H 358
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 75/160 (46%), Gaps = 8/160 (5%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV + + ++S IN+ +D A Q F Q+ + ++ + I G+ ++ + + +
Sbjct: 46 DVFAASCLISISINKNLLDYAAQVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSK 105
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ ++ D T ++ A +LD+G I ++ +D++ N+L+ MY D++
Sbjct: 106 RNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIK 165
Query: 125 KAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQM 156
A D SWT+M+ G SG+ A +F +M
Sbjct: 166 SASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKM 205
>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 658
Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 115/187 (61%), Gaps = 11/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K V+SWTA++S Y G + A F+ MP ++ V W AMI GY+ + F +AL +F
Sbjct: 229 MPEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVF 288
Query: 61 QEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
M D+ T++SIL+A A+L +L+ G+WI +YI KNK+ I GNALIDM+
Sbjct: 289 HHMLINGECRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAK 348
Query: 120 CADVEKAQKDKF---------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C DVE A K+ F +WTTM+ GLA++G +A+++F +M KPD+V ++
Sbjct: 349 CGDVENA-KEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIA 407
Query: 171 VLSACTH 177
VLSACTH
Sbjct: 408 VLSACTH 414
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 90/186 (48%), Gaps = 17/186 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DVISW +++S Y+ RG++ A D+MPER+ V W +++ G + A ++F
Sbjct: 136 MPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNIVTWNSVVCGLSKAGNMELAHSVF 195
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++M N E + S+++ + + + I + + V + A+I Y
Sbjct: 196 EQMPLRN----EVSWNSMISGYVRIGDVRAAQSIFYQMPEKTV----VSWTAMISGYATN 247
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGV 171
D++ A+ K+ SW MI G + D+AL +F ML +PD+ + +
Sbjct: 248 GDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLISI 307
Query: 172 LSACTH 177
LSAC H
Sbjct: 308 LSACAH 313
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 67/147 (45%), Gaps = 10/147 (6%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ + G V+ A++ F M +R + WT M+ G + REA+ LF +M
Sbjct: 341 ALIDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKP 400
Query: 71 DEFTIVSILTARANLRALDLGEWI-KTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
D+ +++L+A + ++ G+ + + + +K I ++D+ +E+A
Sbjct: 401 DDVIFIAVLSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAGKLEEAVRF 460
Query: 127 ------QKDKFSWTTMIVGLAISGNGD 147
+ + W T++ I GNGD
Sbjct: 461 TARMHLKPNAVIWATLLFCCKIHGNGD 487
Score = 42.4 bits (98), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 9/117 (7%)
Query: 54 REALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNAL 113
+EAL ++ M+ + + FT +L +AL+ G I I K + +F N+L
Sbjct: 56 KEALRVYSRMKALMVEANSFTFTFLLKCFETSQALEDGRVIHGEILKLGFGSSVFVQNSL 115
Query: 114 IDMYCICAD---------VEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI 161
+ Y C++ E ++D SW +MI G A+ + +M +I
Sbjct: 116 LGFYANCSENLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNI 172
>gi|255586679|ref|XP_002533966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526049|gb|EEF28413.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 515
Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/186 (41%), Positives = 112/186 (60%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NKDV+SW +++ Y N G ++ + F++MPER+ W +I GY F E L+ F
Sbjct: 287 MPNKDVMSWNTLLNGYANGGDIEACERLFEEMPERNVFSWNGLIGGYAHHGCFLEVLSSF 346
Query: 61 QEMQTSNIM-GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+ M I+ ++ T+V++L+A A L ALDLG+W+ Y N K +++ GNALIDMY
Sbjct: 347 KRMLVDGIVVPNDATLVTVLSACARLGALDLGKWVHMYAQSNGYKGNVYIGNALIDMYAK 406
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C +VE A +KD SW T+I GLA+ G AL +FS+M A KPD + ++GV
Sbjct: 407 CGNVENAIVVFKSLDKKDLISWNTLIGGLAVHGRAADALYLFSRMKDAGEKPDGITFLGV 466
Query: 172 LSACTH 177
L ACTH
Sbjct: 467 LCACTH 472
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 70/137 (51%), Gaps = 8/137 (5%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A + FDQ+PE + W AM+ GY + RE + LF++M + +I+ + F+ ++ +
Sbjct: 117 AHKLFDQIPEPNVSNWNAMLKGYSLNDSHREVIVLFRKMISMDILPNCFSFPIVIKSSVK 176
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKFSWTTM 136
+ A GE + ++ K+ + + F G LID+Y + E +++ +WT+M
Sbjct: 177 INAFKEGEELHCFVIKSGCRANPFVGTMLIDLYSSGRMIVSAYRVFGEMIERNVVAWTSM 236
Query: 137 IVGLAISGNGDKALDMF 153
I G + + + A +F
Sbjct: 237 IKGFILCNDIETARRLF 253
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 19/176 (10%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T ++ Y + + A + F +M ER+ V WT+MI G++ N A LF+ +++
Sbjct: 203 TMLIDLYSSGRMIVSAYRVFGEMIERNVVAWTSMIKGFILCNDIETARRLFELAPQRDVV 262
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKN-DIFAGNALIDMYCICADVEK--- 125
I +D+G+ ++ +K+ N D+ + N L++ Y D+E
Sbjct: 263 LWNIMISGY---------IDIGDLVRAQELFHKMPNKDVMSWNTLLNGYANGGDIEACER 313
Query: 126 -----AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI-KPDEVAYVGVLSAC 175
+++ FSW +I G A G + L F +ML I P++ V VLSAC
Sbjct: 314 LFEEMPERNVFSWNGLIGGYAHHGCFLEVLSSFKRMLVDGIVVPNDATLVTVLSAC 369
>gi|255540005|ref|XP_002511067.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550182|gb|EEF51669.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 318
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 118/182 (64%), Gaps = 9/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DVI + ++ Y Q+D AR+ FD++P R+ V WT++I GY R+N ++E L LF+E+Q
Sbjct: 79 DVILGSCLIDMYAKCAQMDNAREVFDKIPVRNLVCWTSLIVGYARLNMYKEGLELFRELQ 138
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ ++ D + +++A ++ AL G W+ TY ++N + ++ NALIDMY C D+E
Sbjct: 139 IAGVIADAALVACVVSACGHMGALAQGRWVHTYCERNGIDMNLSVRNALIDMYSKCGDIE 198
Query: 125 KAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSAC 175
KA KD FSWT MI G A++G D+AL++F+Q+ + +KP+EV ++GVLSAC
Sbjct: 199 KAHQIFNGMVKKDLFSWTAMISGFAMNGYSDEALELFAQVETCNDVKPNEVTFLGVLSAC 258
Query: 176 TH 177
+H
Sbjct: 259 SH 260
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 80/152 (52%), Gaps = 9/152 (5%)
Query: 35 RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG-DEFTIVSILTARANLRALDLGEW 93
RD V W +MI GYL+ R +AL +F E+ N + DE T+V+ LTA ++LG+
Sbjct: 7 RDVVSWNSMISGYLQCERNGDALKVFGELLNDNFVRFDEVTLVNALTACGRTGFVNLGKK 66
Query: 94 IKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--DKFS------WTTMIVGLAISGN 145
I I N D+ G+ LIDMY CA ++ A++ DK WT++IVG A
Sbjct: 67 IHALIVVNGFVLDVILGSCLIDMYAKCAQMDNAREVFDKIPVRNLVCWTSLIVGYARLNM 126
Query: 146 GDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+ L++F ++ A + D V+SAC H
Sbjct: 127 YKEGLELFRELQIAGVIADAALVACVVSACGH 158
>gi|255548950|ref|XP_002515531.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545475|gb|EEF46980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 397
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 125/186 (67%), Gaps = 10/186 (5%)
Query: 3 NKDVISWTAIVSRYI-NRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
+ DV +V Y R ++ AR+ FD+M +RD V W+AMI GY R+ R +A+ LF+
Sbjct: 168 DNDVHVQNTMVHMYCCGRDGIEFAREVFDEMCKRDPVSWSAMIGGYARLGRCSDAIDLFR 227
Query: 62 EMQTSNIM-GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EMQ + DE T+VS+L+A +L AL+LG+W+++YI+K KV+ + NALIDM+ C
Sbjct: 228 EMQIEGVCRPDEITMVSVLSACTDLGALELGKWVESYIEKEKVQKSVELCNALIDMFAKC 287
Query: 121 ADVEKA------QKDK--FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
DV+KA KD+ SWT++I GLA+ G G +A++ F +M+++ + PD+VA++G+L
Sbjct: 288 GDVDKAIKLFRNMKDRTIVSWTSVIAGLAMHGRGLEAVEFFEEMIKSGVLPDDVAFIGLL 347
Query: 173 SACTHN 178
SAC+H+
Sbjct: 348 SACSHS 353
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 12/153 (7%)
Query: 36 DYVLWTAMIDGYLRVNRFRE--ALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEW 93
D L+ +I Y N + AL +++ M +++ ++FT +L A A + L+LG+
Sbjct: 98 DTFLFNTIIRAYAHSNNVSKGKALCMYKLMLEYDVLPNKFTYPFVLKACAGIGYLNLGKS 157
Query: 94 IKTYIDKNKVKNDIFAGNALIDMYCICADV---------EKAQKDKFSWTTMIVGLAISG 144
+ + K ND+ N ++ MYC D E ++D SW+ MI G A G
Sbjct: 158 VHGSVLKFGFDNDVHVQNTMVHMYCCGRDGIEFAREVFDEMCKRDPVSWSAMIGGYARLG 217
Query: 145 NGDKALDMFSQM-LRASIKPDEVAYVGVLSACT 176
A+D+F +M + +PDE+ V VLSACT
Sbjct: 218 RCSDAIDLFREMQIEGVCRPDEITMVSVLSACT 250
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
K V A++ + G VD A + F M +R V WT++I G R EA+ F+EM
Sbjct: 272 KSVELCNALIDMFAKCGDVDKAIKLFRNMKDRTIVSWTSVIAGLAMHGRGLEAVEFFEEM 331
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYID 99
S ++ D+ + +L+A ++ +D G + Y D
Sbjct: 332 IKSGVLPDDVAFIGLLSACSHSGLVDKG---REYFD 364
>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
Length = 492
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 120/185 (64%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D++SW ++ Y RG+V +AR+ FD +RD W++MI Y + R +EAL L+
Sbjct: 49 MPMRDLVSWNTMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELW 108
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EM ++I+ D T+VS+++A ++L AL +G + +++ N+++ D+ G ALIDMY C
Sbjct: 109 REMHAASIIPDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKC 168
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
D+E AQ KD +W++MI+GLA G G ++L +FS+M+ +KP+ V +VGVL
Sbjct: 169 GDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVL 228
Query: 173 SACTH 177
ACTH
Sbjct: 229 IACTH 233
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 75/166 (45%), Gaps = 25/166 (15%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ Y G ++ A++ FD+MPE+D W++MI G E+L+LF +M + +
Sbjct: 159 TALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMK 218
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
+ T V +L A ++ + G K Y + N++ ++ Y D+
Sbjct: 219 PNGVTFVGVLIACTHVGLVSEG---KKYF---RSMNEVHGIEPTVEHYGCMVDL------ 266
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
L SG+ ++A + M + +PD + + +L AC
Sbjct: 267 ----------LGRSGHVEEARQLIRSM---TFEPDTIIWRALLGAC 299
>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
isoform 1 [Vitis vinifera]
Length = 672
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/187 (42%), Positives = 116/187 (62%), Gaps = 12/187 (6%)
Query: 1 MKNKDVIS-WTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTL 59
M ++ +IS W A++S + G V++AR+ FD+M ERD + W+AMIDGY++ F EAL +
Sbjct: 230 MPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEI 289
Query: 60 FQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
F +MQ I +F + S+L+A ANL ALD G WI TY +N ++ D G +L+DMY
Sbjct: 290 FHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAK 349
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C ++ A K+ SW MI GLA+ G + A+D+FS+M I P+E+ +VGV
Sbjct: 350 CGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DINPNEITFVGV 406
Query: 172 LSACTHN 178
L+AC H
Sbjct: 407 LNACAHG 413
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 73/175 (41%), Gaps = 47/175 (26%)
Query: 10 TAIVSRYINRGQVDIARQCFD-QMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI 68
++ + Y + G++ AR+ D + E D V W AMIDGYLR A LF+ M ++
Sbjct: 176 SSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSM 235
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA-- 126
I T+ NA+I + C VE A
Sbjct: 236 -------------------------ISTW-------------NAMISGFSRCGMVEVARE 257
Query: 127 ------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
++D+ SW+ MI G G +AL++F QM + I+P + VLSAC
Sbjct: 258 FFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSAC 312
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 67/156 (42%), Gaps = 9/156 (5%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88
FD + + + LW MI + N +A+ L+ EM ++ +++T ++L A ++ +
Sbjct: 94 FDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVV 153
Query: 89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK---------DKFSWTTMIVG 139
G + ++ K+ + D ++ I MY + +A++ D W MI G
Sbjct: 154 AEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDG 213
Query: 140 LAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
G + A ++F M S+ A + S C
Sbjct: 214 YLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRC 249
>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
Length = 2355
Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats.
Identities = 72/186 (38%), Positives = 124/186 (66%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+++SW+ ++S Y G ++ ARQ F+ MP R+ V W AMI GY + ++ +A+ LF
Sbjct: 219 MMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAIELF 278
Query: 61 QEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
++MQ + ++ T+VS+L+A A+L ALDLG+WI +I +NK++ +F GNAL DMY
Sbjct: 279 RQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAK 338
Query: 120 CADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C V E ++D SW+ +I+GLA+ G ++A + F++M+ ++P++++++G+
Sbjct: 339 CGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGL 398
Query: 172 LSACTH 177
L+ACTH
Sbjct: 399 LTACTH 404
Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY------CICADV- 123
DE+T S+L A A L + G+ + ++ K ++++F N+L+D+Y CI +
Sbjct: 126 DEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLF 185
Query: 124 -EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI 161
E +D SW T+I G SG DKA +F M+ ++
Sbjct: 186 DEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNL 224
Score = 37.7 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+ Y G V A+ F +M ERD + W+ +I G EA F EM +
Sbjct: 331 ALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEP 390
Query: 71 DEFTIVSILTARANLRALDLG 91
++ + + +LTA + +D G
Sbjct: 391 NDISFMGLLTACTHAGLVDKG 411
>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 116/185 (62%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ ++V+SWT ++S I+ G + AR+ FD++P ++ V WTAMI+GY+R + EAL LF
Sbjct: 186 MRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELF 245
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ MQ NI +E+T+VS++ A + L LG I Y KN ++ ++ G ALIDMY C
Sbjct: 246 KRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKC 305
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ A +K +W +MI L + G G +AL++FS+M R ++KPD + ++GVL
Sbjct: 306 GSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVL 365
Query: 173 SACTH 177
AC H
Sbjct: 366 CACVH 370
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 97/171 (56%), Gaps = 9/171 (5%)
Query: 16 YINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-QTSNIMGDEFT 74
Y GQ ++++ FD M E+D + W +MI Y + EAL +F M + + + T
Sbjct: 1296 YAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVT 1355
Query: 75 IVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--DKF- 131
+ ++L A A+ AL G+ I + K ++ ++ G ++IDMYC C VE A+K D+
Sbjct: 1356 LSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMK 1415
Query: 132 -----SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
SWT M+ G + G +ALD+F +M+RA +KP+ + +V VL+AC+H
Sbjct: 1416 EKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSH 1466
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 96/190 (50%), Gaps = 17/190 (8%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ--- 61
D+ +A++ Y GQ+ AR FD++P R+ V WT+MI GY++ + AL LF+
Sbjct: 1176 DLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFL 1235
Query: 62 EMQT-----SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116
E +T +N+ D +VS+L+A + + + E + ++ K I GN L+D
Sbjct: 1236 EEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDA 1295
Query: 117 YCICAD--VEKA------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVA 167
Y C V K +KD SW +MI A SG +AL++F M+R ++ + V
Sbjct: 1296 YAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVT 1355
Query: 168 YVGVLSACTH 177
VL AC H
Sbjct: 1356 LSAVLLACAH 1365
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 83/204 (40%), Gaps = 39/204 (19%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
++ Y G++ A F Q+ W +I +AL L++ M I D
Sbjct: 65 LIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAAD 124
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY--C----------- 118
+FT ++ A N ++DLG+ + + K D+F N LID Y C
Sbjct: 125 KFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFE 184
Query: 119 ------------------ICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDM 152
C D+++A+ K+ SWT MI G + ++AL++
Sbjct: 185 KMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALEL 244
Query: 153 FSQMLRASIKPDEVAYVGVLSACT 176
F +M +I P+E V ++ ACT
Sbjct: 245 FKRMQAENIFPNEYTMVSLIKACT 268
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 12/179 (6%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+V T+I+ Y G+V++A++ FD+M E++ WTAM+ GY R +EAL +F +M
Sbjct: 1387 NVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMV 1446
Query: 65 TSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ + + T VS+L A ++ ++ G W K ++ I ++D++ +
Sbjct: 1447 RAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCL 1506
Query: 124 EKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+A + D W +++ I N D ++ +Q L + PD Y +LS
Sbjct: 1507 NEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLG-EIAAQKL-FELDPDNCGYYVLLS 1563
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 63/153 (41%), Gaps = 16/153 (10%)
Query: 40 WTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYID 99
W ++I R EAL F ++ ++ + + + + L L G
Sbjct: 1110 WNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAF 1169
Query: 100 KNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALD 151
+ D+F +ALIDMY C ++ A+ ++ SWT+MI G + D AL
Sbjct: 1170 VFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALL 1229
Query: 152 MFSQMLRA--------SIKPDEVAYVGVLSACT 176
+F L ++ D V V VLSAC+
Sbjct: 1230 LFKDFLEEETEVEDGNNVPLDSVVMVSVLSACS 1262
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ Y G + A + F+ MP + W +MI +EAL LF EM+ N+
Sbjct: 296 TALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVK 355
Query: 70 GDEFTIVSILTARANLRALDLG 91
D T + +L A +++ + G
Sbjct: 356 PDAITFIGVLCACVHIKNVKEG 377
>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
Length = 793
Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/181 (43%), Positives = 111/181 (61%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D ISW +++S Y+ G+++ AR FD MP++D V W+AMI GY + +RF E L LFQEMQ
Sbjct: 354 DQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQ 413
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
DE +VS+++A +L ALD G+WI YI KN +K +I G LI+MY VE
Sbjct: 414 IEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVE 473
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A +K +W +I+GLA++G DK+L FS+M + P+E+ +V VL AC
Sbjct: 474 DALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACR 533
Query: 177 H 177
H
Sbjct: 534 H 534
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 104/216 (48%), Gaps = 39/216 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++VI+ +++ + +G V+ A + F++M ++D V W+A+I Y + + EAL LF
Sbjct: 218 MPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILF 277
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EM + IM DE ++S+L+A + L + G+ + + K ++ + NALI MY C
Sbjct: 278 KEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSC 337
Query: 121 ADVEKAQK--------DKFSWTTMIVGLAISGNGDKA----------------------- 149
+V AQK D+ SW +MI G G +KA
Sbjct: 338 EEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYA 397
Query: 150 --------LDMFSQMLRASIKPDEVAYVGVLSACTH 177
L +F +M KPDE V V+SACTH
Sbjct: 398 QQDRFTETLVLFQEMQIEGTKPDETILVSVISACTH 433
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 78/150 (52%), Gaps = 13/150 (8%)
Query: 16 YINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTI 75
+IN Q + Q F + + + M+ GY++ N +A+ +++ M SN+ D +T
Sbjct: 73 FININQ---SYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYT- 128
Query: 76 VSILTARANLRALDL-GEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK------ 128
IL ++R + G+ I+ ++ K +D++ N LI+MY +C ++ A+K
Sbjct: 129 YPILFQSCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSS 188
Query: 129 --DKFSWTTMIVGLAISGNGDKALDMFSQM 156
D SW +M+ G + GN ++A D++ +M
Sbjct: 189 VLDMVSWNSMLAGYVLVGNVEEAKDVYDRM 218
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 31/174 (17%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ DV +++ Y G + AR+ FD D V W +M+ GY+ V EA ++
Sbjct: 158 DSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDR 217
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M N++ IV +F ++ C +
Sbjct: 218 MPERNVIASNSMIV------------------------------LFGKKGNVEEACKLFN 247
Query: 123 VEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
E QKD SW+ +I + ++AL +F +M I DEV + VLSAC+
Sbjct: 248 -EMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACS 300
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
++I T +++ Y+ G V+ A + F + E+ W A+I G ++L F EM+
Sbjct: 455 NIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMK 514
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGE-WIKTYIDKNKVKNDIFAGNALIDM 116
+ +E T V++L A ++ +D G + I ++K+ +I ++D+
Sbjct: 515 EHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDL 567
>gi|302142752|emb|CBI19955.3| unnamed protein product [Vitis vinifera]
Length = 488
Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 115/187 (61%), Gaps = 11/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K V+SWTA++S Y G + A F+ MP ++ V W AMI GY+ + F +AL +F
Sbjct: 165 MPEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVF 224
Query: 61 QEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
M D+ T++SIL+A A+L +L+ G+WI +YI KNK+ I GNALIDM+
Sbjct: 225 HHMLINGECRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAK 284
Query: 120 CADVEKAQKDKF---------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C DVE A K+ F +WTTM+ GLA++G +A+++F +M KPD+V ++
Sbjct: 285 CGDVENA-KEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIA 343
Query: 171 VLSACTH 177
VLSACTH
Sbjct: 344 VLSACTH 350
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 90/186 (48%), Gaps = 17/186 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DVISW +++S Y+ RG++ A D+MPER+ V W +++ G + A ++F
Sbjct: 72 MPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNIVTWNSVVCGLSKAGNMELAHSVF 131
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++M N E + S+++ + + + I + + V + A+I Y
Sbjct: 132 EQMPLRN----EVSWNSMISGYVRIGDVRAAQSIFYQMPEKTV----VSWTAMISGYATN 183
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGV 171
D++ A+ K+ SW MI G + D+AL +F ML +PD+ + +
Sbjct: 184 GDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLISI 243
Query: 172 LSACTH 177
LSAC H
Sbjct: 244 LSACAH 249
>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
Length = 673
Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 79/187 (42%), Positives = 116/187 (62%), Gaps = 12/187 (6%)
Query: 1 MKNKDVIS-WTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTL 59
M ++ +IS W A++S + G V++AR+ FD+M ERD + W+AMIDGY++ F EAL +
Sbjct: 231 MPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEI 290
Query: 60 FQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
F +MQ I +F + S+L+A ANL ALD G WI TY +N ++ D G +L+DMY
Sbjct: 291 FHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAK 350
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C ++ A K+ SW MI GLA+ G + A+D+FS+M I P+E+ +VGV
Sbjct: 351 CGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DIYPNEITFVGV 407
Query: 172 LSACTHN 178
L+AC H
Sbjct: 408 LNACAHG 414
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 73/175 (41%), Gaps = 47/175 (26%)
Query: 10 TAIVSRYINRGQVDIARQCFD-QMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI 68
++ + Y + G++ AR+ D + E D V W AMIDGYLR A LF+ M ++
Sbjct: 177 SSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSM 236
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA-- 126
I T+ NA+I + C VE A
Sbjct: 237 -------------------------ISTW-------------NAMISGFSRCGMVEVARE 258
Query: 127 ------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
++D+ SW+ MI G G +AL++F QM + I+P + VLSAC
Sbjct: 259 FFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSAC 313
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 67/156 (42%), Gaps = 9/156 (5%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88
FD + + + LW MI + N +A+ L+ EM ++ +++T ++L A ++ +
Sbjct: 95 FDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVV 154
Query: 89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK---------DKFSWTTMIVG 139
G + ++ K+ + D ++ I MY + +A++ D W MI G
Sbjct: 155 AEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDG 214
Query: 140 LAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
G + A ++F M S+ A + S C
Sbjct: 215 YLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRC 250
>gi|125562063|gb|EAZ07511.1| hypothetical protein OsI_29767 [Oryza sativa Indica Group]
Length = 567
Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats.
Identities = 78/188 (41%), Positives = 118/188 (62%), Gaps = 11/188 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++SW A++ Y +D AR+ FD MPE+D V WT MI GY + R+++ L LF
Sbjct: 252 MPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELF 311
Query: 61 QEMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK--VKNDIFAGNALIDMY 117
+ MQT SN+ +E T+VS+L+A ANL AL+ G W+ +IDK+K + N+ G ALIDMY
Sbjct: 312 RAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMY 371
Query: 118 CICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
C + A +K+ +W +I LA++GN ++D F QM R KP+++ +V
Sbjct: 372 AKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNAQDSVDAFEQMKRTGEKPNDITFV 431
Query: 170 GVLSACTH 177
GVL+AC+H
Sbjct: 432 GVLTACSH 439
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 57/182 (31%), Positives = 95/182 (52%), Gaps = 15/182 (8%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+SW ++ Y+ G+++ A++ FD+MP R+ V W+ M+ GY A +F M
Sbjct: 161 DVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMP 220
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
I + T S++T A L L + D+ V+N + + NA++ Y + +D++
Sbjct: 221 A--IGRNVVTWNSMVTGFARHGLLPLA---RKMFDEMPVRN-LVSWNAMLRGYSVNSDMD 274
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGVLSAC 175
A +KD SWT MI G A +G L++F M ++++P+EV V VLSAC
Sbjct: 275 GARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSAC 334
Query: 176 TH 177
+
Sbjct: 335 AN 336
Score = 36.6 bits (83), Expect = 4.1, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 42/81 (51%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G+ DIA + F+ + ++ W A+I ++++ F++M+ +
Sbjct: 366 ALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNAQDSVDAFEQMKRTGEKP 425
Query: 71 DEFTIVSILTARANLRALDLG 91
++ T V +LTA ++ +D G
Sbjct: 426 NDITFVGVLTACSHGGLVDEG 446
>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 632
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 121/183 (66%), Gaps = 9/183 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+DV+SW ++S Y G VD AR FD M E++ V W+ MI GY R ++ +A+ LF++M
Sbjct: 191 RDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQM 250
Query: 64 Q-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
Q + ++ T+VS+L+A A+L ALDLG+WI +I +NK++ +F GNAL DMY C
Sbjct: 251 QHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGC 310
Query: 123 V--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
V E ++D SW+ +I+GLA+ G ++A + F++M+ ++P++++++G+L+A
Sbjct: 311 VLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTA 370
Query: 175 CTH 177
CTH
Sbjct: 371 CTH 373
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 78/180 (43%), Gaps = 42/180 (23%)
Query: 40 WTAMIDGYLRVNRFREALTLF--QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTY 97
+ A++ + + N + ++ F Q + + DE+T S+L A A L + G+ + +
Sbjct: 93 YNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCF 152
Query: 98 IDKNKVKNDIFAGNALIDMY------CICADV--EKAQKDKFSWTTMIVGLAISGNGDK- 148
+ K ++++F N+L+D+Y CI + E +D SW T+I G SG DK
Sbjct: 153 VTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKA 212
Query: 149 ------------------------------ALDMFSQMLR-ASIKPDEVAYVGVLSACTH 177
A+++F QM + P++V V VLSAC H
Sbjct: 213 RMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAH 272
Score = 38.9 bits (89), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+ Y G V A+ F +M ERD + W+ +I G EA F EM +
Sbjct: 300 ALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEP 359
Query: 71 DEFTIVSILTARANLRALDLG 91
++ + + +LTA + +D G
Sbjct: 360 NDISFMGLLTACTHAGLVDKG 380
>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 535
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 114/185 (61%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D +SW +++S ++ GQ+ AR+ FD+MP R V WT MI+GY R + +AL +F
Sbjct: 167 MTERDAVSWNSLISGHVRLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIF 226
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ I DE +++S+L A A L AL++G+WI Y +K+ + NAL++MY C
Sbjct: 227 REMQVVGIEPDEISVISVLPACAQLGALEVGKWIHKYSEKSGFLKNAGVFNALVEMYAKC 286
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+++A +KD SW+TMI GLA G G A+ +F M +A + P+ V +VGVL
Sbjct: 287 GCIDEAWGLFNQMIEKDVISWSTMIGGLANHGKGYAAIRVFEDMQKAGVTPNGVTFVGVL 346
Query: 173 SACTH 177
SAC H
Sbjct: 347 SACAH 351
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 84/198 (42%), Gaps = 40/198 (20%)
Query: 18 NRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTS-NIMGDEFTIV 76
N VD A F Q+ + + A+I Y ++ A+T+F +M T+ + D+FT
Sbjct: 51 NLSHVDYATMIFQQLENPNVFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFP 110
Query: 77 SILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE------------ 124
++ + A L LG+ + ++ K K NALIDMY C D+
Sbjct: 111 FVIKSCAGLLCRRLGQQVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTER 170
Query: 125 ------------------KAQKDKF---------SWTTMIVGLAISGNGDKALDMFSQML 157
K+ ++ F SWTTMI G A G AL +F +M
Sbjct: 171 DAVSWNSLISGHVRLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQ 230
Query: 158 RASIKPDEVAYVGVLSAC 175
I+PDE++ + VL AC
Sbjct: 231 VVGIEPDEISVISVLPAC 248
>gi|125603908|gb|EAZ43233.1| hypothetical protein OsJ_27833 [Oryza sativa Japonica Group]
Length = 567
Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats.
Identities = 78/188 (41%), Positives = 118/188 (62%), Gaps = 11/188 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++SW A++ Y +D AR+ FD MPE+D V WT MI GY + R+++ L LF
Sbjct: 252 MPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELF 311
Query: 61 QEMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK--VKNDIFAGNALIDMY 117
+ MQT SN+ +E T+VS+L+A ANL AL+ G W+ +IDK+K + N+ G ALIDMY
Sbjct: 312 RAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMY 371
Query: 118 CICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
C + A +K+ +W +I LA++GN ++D F QM R KP+++ +V
Sbjct: 372 AKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPNDITFV 431
Query: 170 GVLSACTH 177
GVL+AC+H
Sbjct: 432 GVLTACSH 439
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 57/182 (31%), Positives = 95/182 (52%), Gaps = 15/182 (8%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+SW ++ Y+ G+++ A++ FD+MP R+ V W+ M+ GY A +F M
Sbjct: 161 DVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMP 220
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
I + T S++T A L L + D+ V+N + + NA++ Y + +D++
Sbjct: 221 A--IGRNVVTWNSMVTGFARHGLLPLA---RKMFDEMPVRN-LVSWNAMLRGYSVNSDMD 274
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGVLSAC 175
A +KD SWT MI G A +G L++F M ++++P+EV V VLSAC
Sbjct: 275 GARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSAC 334
Query: 176 TH 177
+
Sbjct: 335 AN 336
Score = 38.5 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 42/81 (51%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G+ DIA + F+ + ++ W A+I R+++ F++M+ +
Sbjct: 366 ALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKP 425
Query: 71 DEFTIVSILTARANLRALDLG 91
++ T V +LTA ++ +D G
Sbjct: 426 NDITFVGVLTACSHGGLVDEG 446
>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 114/186 (61%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M N+D +SW A+++ Y G+V++ + FD+MPER+ W +I GY++ F E L F
Sbjct: 233 MPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNGLFSETLESF 292
Query: 61 QEMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+ M +++ ++FT+V++L+A + L ALD+G+W+ Y + K ++F GN LIDMY
Sbjct: 293 KRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFVGNVLIDMYAK 352
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C +E A +KD SW T+I GLAI G+ AL MF +M +PD V +VG+
Sbjct: 353 CGVIENAVVVFNCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVTFVGI 412
Query: 172 LSACTH 177
LSACTH
Sbjct: 413 LSACTH 418
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 32/177 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+ WTAI++ YI G V R+ FD PERD V+W+ +I GY+ A LF
Sbjct: 171 MHERNVVVWTAIINGYILCGDVVSGRRLFDLAPERDVVMWSVLISGYIESKNMAAARELF 230
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M + M W N + N +A N ++M+
Sbjct: 231 DKMPNRDTM----------------------SW-------NAMLNG-YAVNGEVEMFEKV 260
Query: 121 ADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGVLSACT 176
D E +++ FSW +I G +G + L+ F +ML + P++ V VLSAC+
Sbjct: 261 FD-EMPERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACS 316
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 11/146 (7%)
Query: 21 QVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80
++ AR+ FD++P+ + W AM GYL+ R+ + LF E+ M + FT I+
Sbjct: 59 RIHHARKLFDKIPQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIK 118
Query: 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFS 132
+ L + GE + K+ K++ F +LIDMY VE A +++
Sbjct: 119 SCGKLEGVREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVV 178
Query: 133 WTTMIVGLAISGN---GDKALDMFSQ 155
WT +I G + G+ G + D+ +
Sbjct: 179 WTAIINGYILCGDVVSGRRLFDLAPE 204
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 25/164 (15%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
++ Y G ++ A F+ + +D + W +I+G +AL +F M++ D
Sbjct: 346 LIDMYAKCGVIENAVVVFNCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEEPD 405
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKF 131
T V IL+A ++ VK+ +++D Y I +E
Sbjct: 406 GVTFVGILSACTHM---------------GLVKDGFLYFKSMVDHYSIVPQIEH------ 444
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ L +G D+AL+ +M I+PD V + +L AC
Sbjct: 445 -YGCMVDLLGRAGLLDQALNFIRKM---PIEPDAVIWAALLGAC 484
>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
Length = 2598
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 116/185 (62%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ ++V+SWT ++S I+ G + AR+ FD++P ++ V WTAMI+GY+R + EAL LF
Sbjct: 186 MRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELF 245
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ MQ NI +E+T+VS++ A + L LG I Y KN ++ ++ G ALIDMY C
Sbjct: 246 KRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKC 305
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ A +K +W +MI L + G G +AL++FS+M R ++KPD + ++GVL
Sbjct: 306 GSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVL 365
Query: 173 SACTH 177
AC H
Sbjct: 366 CACVH 370
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 97/171 (56%), Gaps = 9/171 (5%)
Query: 16 YINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-QTSNIMGDEFT 74
Y GQ ++++ FD M E+D + W +MI Y + EAL +F M + + + T
Sbjct: 2169 YAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVT 2228
Query: 75 IVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--DKF- 131
+ ++L A A+ AL G+ I + K ++ ++ G ++IDMYC C VE A+K D+
Sbjct: 2229 LSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMK 2288
Query: 132 -----SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
SWT M+ G + G +ALD+F +M+RA +KP+ + +V VL+AC+H
Sbjct: 2289 EKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSH 2339
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 96/190 (50%), Gaps = 17/190 (8%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ--- 61
D+ +A++ Y GQ+ AR FD++P R+ V WT+MI GY++ + AL LF+
Sbjct: 2049 DLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFL 2108
Query: 62 EMQT-----SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116
E +T +N+ D +VS+L+A + + + E + ++ K I GN L+D
Sbjct: 2109 EEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDA 2168
Query: 117 YCICAD--VEKA------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVA 167
Y C V K +KD SW +MI A SG +AL++F M+R ++ + V
Sbjct: 2169 YAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVT 2228
Query: 168 YVGVLSACTH 177
VL AC H
Sbjct: 2229 LSAVLLACAH 2238
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 82/204 (40%), Gaps = 39/204 (19%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
++ Y G++ A F Q+ W +I +AL L++ M I D
Sbjct: 65 LIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAAD 124
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY-------------- 117
+FT ++ A N ++DLG+ + + K D+F N LID Y
Sbjct: 125 KFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFE 184
Query: 118 -----------------CICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDM 152
C D+++A+ K+ SWT MI G + ++AL++
Sbjct: 185 KMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALEL 244
Query: 153 FSQMLRASIKPDEVAYVGVLSACT 176
F +M +I P+E V ++ ACT
Sbjct: 245 FKRMQAENIFPNEYTMVSLIKACT 268
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 12/179 (6%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+V T+I+ Y G+V++A++ FD+M E++ WTAM+ GY R +EAL +F +M
Sbjct: 2260 NVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMV 2319
Query: 65 TSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ + + T VS+L A ++ ++ G W K ++ I ++D++ +
Sbjct: 2320 RAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCL 2379
Query: 124 EKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+A + D W +++ I N D ++ +Q L + PD Y +LS
Sbjct: 2380 NEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLG-EIAAQKL-FELDPDNCGYYVLLS 2436
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 16/89 (17%)
Query: 104 KNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQ 155
+ D+F +ALIDMY C ++ A+ ++ SWT+MI G + D AL +F
Sbjct: 2047 ETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKD 2106
Query: 156 MLRA--------SIKPDEVAYVGVLSACT 176
L ++ D V V VLSAC+
Sbjct: 2107 FLEEETEVEDGNNVPLDSVVMVSVLSACS 2135
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ Y G + A + F+ MP + W +MI +EAL LF EM+ N+
Sbjct: 296 TALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVK 355
Query: 70 GDEFTIVSILTARANLRALDLG 91
D T + +L A +++ + G
Sbjct: 356 PDAITFIGVLCACVHIKNVKEG 377
>gi|255543449|ref|XP_002512787.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547798|gb|EEF49290.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 480
Score = 155 bits (392), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 77/183 (42%), Positives = 111/183 (60%), Gaps = 8/183 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V+SWT V+ + G++D AR FD+MP R+ V WTAMI+GY++ R +EA LF
Sbjct: 191 MAVRSVVSWTTFVAGLVACGELDTARAAFDEMPMRNVVSWTAMINGYVKNQRPQEAFELF 250
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
Q MQ +N+ + FT+V +L A L +L+LG I Y +N K +F G ALIDMY C
Sbjct: 251 QRMQLANVRPNGFTLVGLLRACTELGSLELGRRIHEYALENGFKVGVFLGTALIDMYSKC 310
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E A +K +W +MI L + G G +AL +F+QM A+++PD + +VGVL
Sbjct: 311 GSIEDAKKVFEEMQKKSLATWNSMITSLGVHGFGKEALALFAQMEEANVRPDAITFVGVL 370
Query: 173 SAC 175
AC
Sbjct: 371 FAC 373
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 81/195 (41%), Gaps = 39/195 (20%)
Query: 21 QVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80
+VD A FDQ+ W MI Y ++AL L+ M D+FT ++
Sbjct: 79 KVDYATLIFDQIQNPHTFTWNFMIRAYNYNGNSQQALLLYNLMICEGFSPDKFTFPFVIK 138
Query: 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--DKF------S 132
A + ALD G+ + + K D F N L+D+Y C D++ A+K DK S
Sbjct: 139 ACLDHSALDKGKEVHGFAIKTGFWKDTFLSNTLMDLYFKCGDLDYARKLFDKMAVRSVVS 198
Query: 133 WTTMIVGLAISGNGD-------------------------------KALDMFSQMLRASI 161
WTT + GL G D +A ++F +M A++
Sbjct: 199 WTTFVAGLVACGELDTARAAFDEMPMRNVVSWTAMINGYVKNQRPQEAFELFQRMQLANV 258
Query: 162 KPDEVAYVGVLSACT 176
+P+ VG+L ACT
Sbjct: 259 RPNGFTLVGLLRACT 273
>gi|255565773|ref|XP_002523876.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536964|gb|EEF38602.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 384
Score = 155 bits (392), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 114/185 (61%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+K K+ +SW ++ Y+ G+ A + FD+MPE+D + WT IDG+++ F +AL F
Sbjct: 158 LKVKNSVSWNTMIDGYMRNGETGSAMELFDEMPEKDAISWTVFIDGFIKKGHFEQALEWF 217
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ S + D TI+++L+A ANL AL LG WI Y+ + + +N++ GN+LIDMY C
Sbjct: 218 REMQVSKVEPDYVTIIAVLSACANLGALGLGLWIHRYVLEKEFRNNVRIGNSLIDMYSRC 277
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E A ++ SW ++IVG A +G ++AL+ F M + KPD V++ G L
Sbjct: 278 GCIELARQVFHKMLKRTLVSWNSIIVGFAANGFAEEALEYFGLMQKEGFKPDGVSFTGAL 337
Query: 173 SACTH 177
+AC+H
Sbjct: 338 TACSH 342
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 83/204 (40%), Gaps = 44/204 (21%)
Query: 14 SRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEF 73
S I + ++ QC + + WT+ I + + EA +LF +M+ + + +
Sbjct: 38 SHLIQHPRTNLKHQCNRSIDLT--IAWTSSISRHCCNGQLPEAASLFTQMRLAAVEPNHI 95
Query: 74 TIVSILTARANL--RALDLGEWIKTYIDKNKVKN-DIFAGNALIDMYCICADV------- 123
T ++++ A+ + +G I Y+ K + ++ G AL+DMY C V
Sbjct: 96 TFATLISFCADFPFQGKSIGPSIHAYVRKLGLDTCNVMVGTALVDMYAKCGKVQLARLIF 155
Query: 124 --------------------------------EKAQKDKFSWTTMIVGLAISGNGDKALD 151
E +KD SWT I G G+ ++AL+
Sbjct: 156 DDLKVKNSVSWNTMIDGYMRNGETGSAMELFDEMPEKDAISWTVFIDGFIKKGHFEQALE 215
Query: 152 MFSQMLRASIKPDEVAYVGVLSAC 175
F +M + ++PD V + VLSAC
Sbjct: 216 WFREMQVSKVEPDYVTIIAVLSAC 239
Score = 42.4 bits (98), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y G +++ARQ F +M +R V W ++I G+ EAL F MQ
Sbjct: 269 SLIDMYSRCGCIELARQVFHKMLKRTLVSWNSIIVGFAANGFAEEALEYFGLMQKEGFKP 328
Query: 71 DEFTIVSILTARANLRALDLG 91
D + LTA ++ +D G
Sbjct: 329 DGVSFTGALTACSHAGMVDEG 349
>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
Length = 742
Score = 155 bits (391), Expect = 8e-36, Method: Composition-based stats.
Identities = 75/178 (42%), Positives = 107/178 (60%), Gaps = 8/178 (4%)
Query: 9 WTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI 68
W AI+ Y G VD+AR FDQM RD + + +MI GY+ R R+AL LF +M+ +
Sbjct: 307 WNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGM 366
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA-- 126
D FT+VS+LTA A+L AL G + I++ V+ D++ G AL+DMY C V++A
Sbjct: 367 RADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATA 426
Query: 127 ------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
++D +WT MI GLA +G G AL+ F QM R +P V Y+ VL+AC+H+
Sbjct: 427 VFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHS 484
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 58/212 (27%), Positives = 93/212 (43%), Gaps = 40/212 (18%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD + W ++ + G +D AR+ Q PER+ V WT++I GY R R +A+ F M
Sbjct: 169 KDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCM 228
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ + DE ++ L+A + L+ LDLG + + + +++ ALIDMY C D+
Sbjct: 229 LSDGVAPDEVAVIGALSACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDI 288
Query: 124 EKAQ----------------------------------------KDKFSWTTMIVGLAIS 143
+AQ +D ++ +MI G S
Sbjct: 289 AQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHS 348
Query: 144 GNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
G AL +F QM R ++ D V +L+AC
Sbjct: 349 GRLRDALQLFMQMRRHGMRADNFTVVSLLTAC 380
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 49/172 (28%), Positives = 77/172 (44%), Gaps = 25/172 (14%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+DV TA++ Y+ G+VD A F +M ERD WTAMI G ++AL F +M
Sbjct: 403 EDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQM 462
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ T +++LTA ++ LD G N + ++ + V
Sbjct: 463 KRDGFQPTSVTYIAVLTACSHSSLLDEGR---------------LHFNEMRSLHKLHPQV 507
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E + MI LA SG D+A+ + M ++P+ V + +LSAC
Sbjct: 508 EH-------YGCMIDLLARSGLLDEAMHLVQTM---PMQPNAVIWGSILSAC 549
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 123 VEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
V+ +++ SWT++I G + +G A+ F+ ML + PDEVA +G LSAC+
Sbjct: 195 VQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACS 248
>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
Length = 933
Score = 155 bits (391), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 115/185 (62%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++ +W ++ Y +VD+A F+QMP RD + WT MI+ Y + RFREAL +F
Sbjct: 172 MPDRNLATWNTLIDGYARLREVDVAELLFNQMPARDIISWTTMINCYSQNKRFREALGVF 231
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM I DE T+ ++++A A+L ALDLG+ I YI ++ D++ G+ALIDMY C
Sbjct: 232 NEMAKHGISPDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKC 291
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++++ +K+ F W ++I GLA+ G ++AL MF +M R IKP+ V +V VL
Sbjct: 292 GSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPNGVTFVSVL 351
Query: 173 SACTH 177
SAC H
Sbjct: 352 SACNH 356
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 31/175 (17%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ V T++V Y + G+++ + + FD+MPERD WT M+ G +RV A LF
Sbjct: 112 DSHVFVQTSLVDFYSSMGRIEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDM 171
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M N+ T +++ A LR +D+ E +
Sbjct: 172 MPDRNLA----TWNTLIDGYARLREVDVAELLFN-------------------------- 201
Query: 123 VEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+ +D SWTTMI + + +AL +F++M + I PDEV V+SAC H
Sbjct: 202 -QMPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACAH 255
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 77/162 (47%), Gaps = 8/162 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N+D +S ++D A + QM + ++ AMI G+++ + +AL L+ +
Sbjct: 11 NQDCYLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQ 70
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M +N+ +T S++ A + L E + ++ +N + +F +L+D Y
Sbjct: 71 MLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGR 130
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
+E++ ++D F+WTTM+ GL G+ A +F M
Sbjct: 131 IEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDMM 172
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 117 YCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
Y + A + + F + MI G S +AL+++ QMLRA++ P + ++ AC
Sbjct: 32 YAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQMLRANVSPTSYTFPSLIKAC 90
>gi|255541070|ref|XP_002511599.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548779|gb|EEF50268.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 429
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 112/187 (59%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++VISWT+++ Y + G V AR FD MPER+ W AMI GY + N+ EAL LF
Sbjct: 211 MPARNVISWTSMIYGYCSGGDVLTARSLFDAMPERNLFSWNAMIGGYSQNNKSHEALKLF 270
Query: 61 QEMQTSNIM-GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
EMQ+ + D+ T+VS+L A A+L ALDLG WI + K+ I AL+DMY
Sbjct: 271 HEMQSRTLFEPDKVTVVSVLPAIADLGALDLGSWIHQFARLKKIDRSINVCTALVDMYAK 330
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C ++ KA +K++ SW +I G A++G D+AL FS+M R +KP++V + V
Sbjct: 331 CGEMLKARRVFDSMPKKEEASWNALINGFAVNGCADEALTAFSEMKREGVKPNDVTMISV 390
Query: 172 LSACTHN 178
LSAC H
Sbjct: 391 LSACNHG 397
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 88/179 (49%), Gaps = 17/179 (9%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ TA+V Y G++ +AR+ FD+M ER V WTA+I G +R A LF +M
Sbjct: 122 DLYVSTALVDMYAKFGELCMARKMFDEMAERGVVSWTALIGGCMRSGDMGNARILFDQMP 181
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
D ++L ++A D+ E ++ DK +N + + ++I YC DV
Sbjct: 182 EK----DSAAYNAMLDGY--VKAGDM-ESAQSLFDKMPARN-VISWTSMIYGYCSGGDVL 233
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGVLSA 174
A +++ FSW MI G + + +AL +F +M R +PD+V V VL A
Sbjct: 234 TARSLFDAMPERNLFSWNAMIGGYSQNNKSHEALKLFHEMQSRTLFEPDKVTVVSVLPA 292
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 82/175 (46%), Gaps = 22/175 (12%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERD-YVLWTAMIDGYLRVNRFREALTLFQEM-QTSNIM 69
I S Y + + ARQ FD P +D L +MI ++ + +F E+ TL+Q++ + + +
Sbjct: 26 IPSVYESLAIIQHARQVFDNRPHKDDTFLCNSMIKAHVGMRQFYESFTLYQDLRKGTGFL 85
Query: 70 GDEFTIVSILTARANLRALDLGEW----IKTYIDKNKVKNDIFAGNALIDMYCICADV-- 123
D FT TA A L++ W I ++ K D++ AL+DMY ++
Sbjct: 86 PDNFT----FTALAKSCGLNMAVWEGFEIHNHVLKMGFGLDLYVSTALVDMYAKFGELCM 141
Query: 124 ------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
E A++ SWT +I G SG+ A +F QM + D AY +L
Sbjct: 142 ARKMFDEMAERGVVSWTALIGGCMRSGDMGNARILFDQM----PEKDSAAYNAML 192
>gi|413925923|gb|AFW65855.1| hypothetical protein ZEAMMB73_620530 [Zea mays]
Length = 501
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 75/179 (41%), Positives = 107/179 (59%), Gaps = 8/179 (4%)
Query: 8 SWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN 67
W AI+ Y G VD+AR FDQM RD + + +MI GY+ R R+AL LF +M+
Sbjct: 306 PWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHG 365
Query: 68 IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA- 126
+ D FT+VS+LTA A+L AL G + I++ V+ D++ G AL+DMY C V++A
Sbjct: 366 MRADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEAT 425
Query: 127 -------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
++D +WT MI GLA +G G AL+ F QM R +P V Y+ VL+AC+H+
Sbjct: 426 AVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHS 484
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 40/215 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ KD + W ++ + G +D AR+ Q PER+ V WT++I GY R R +A+ F
Sbjct: 166 IPAKDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCF 225
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M + + DE ++ L+A + L+ LDLG + + + +++ ALIDMY C
Sbjct: 226 NCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKC 285
Query: 121 ADVEKAQ----------------------------------------KDKFSWTTMIVGL 140
D+ +AQ +D ++ +MI G
Sbjct: 286 GDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGY 345
Query: 141 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
SG AL +F QM R ++ D V +L+AC
Sbjct: 346 IHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTAC 380
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+DV TA++ Y+ G+VD A F +M ERD WTAMI G ++AL F +
Sbjct: 402 EEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQ 461
Query: 63 MQTSNIMGDEFTIVSILTARANLRALD 89
M+ T +++LTA ++ LD
Sbjct: 462 MKRDGFQPTSVTYIAVLTACSHSSLLD 488
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 123 VEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
V+ +++ SWT++I G + +G A+ F+ ML + PDEVA +G LSAC+
Sbjct: 195 VQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACS 248
>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g22690-like [Glycine max]
Length = 836
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 116/186 (62%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NK V++W ++++ + G +++A + FD+M ERD V W MI ++V+ F EA+ LF
Sbjct: 393 MPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELF 452
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ I GD T+V I +A L ALDL +W+ TYI+KN + D+ G AL+DM+ C
Sbjct: 453 REMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRC 512
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
D A ++D +WT I +A+ GN + A+++F++ML +KPD+V +V +L
Sbjct: 513 GDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALL 572
Query: 173 SACTHN 178
+AC+H
Sbjct: 573 TACSHG 578
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 97/181 (53%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ +++ Y G+VD+ R+ FD M ER+ V WT++I+GY + +EA++LF +M
Sbjct: 164 DIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMG 223
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV- 123
+ + + T+V +++A A L+ L+LG+ + +YI + ++ NAL+DMY C D+
Sbjct: 224 EAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDIC 283
Query: 124 -------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
E A K+ + T++ L + +ML+ +PD+V + ++AC
Sbjct: 284 AARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACA 343
Query: 177 H 177
Sbjct: 344 Q 344
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 10/165 (6%)
Query: 22 VDIARQCF--DQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
+D AR F D ++ +I GY +A+ L+ +M I+ D++T +L
Sbjct: 78 LDYARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLL 137
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKF 131
+A + + AL G + + K ++ DIF N+LI Y C V+ +K +
Sbjct: 138 SACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVV 197
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
SWT++I G + +A+ +F QM A ++P+ V V V+SAC
Sbjct: 198 SWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACA 242
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 85/206 (41%), Gaps = 39/206 (18%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+V Y+ G + ARQ FD+ ++ V++ ++ Y+ + L + EM
Sbjct: 271 ALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRP 330
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA---- 126
D+ T++S + A A L L +G+ Y+ +N ++ NA+IDMY C E A
Sbjct: 331 DKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVF 390
Query: 127 -----------------------------------QKDKFSWTTMIVGLAISGNGDKALD 151
++D SW TMI L ++A++
Sbjct: 391 EHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIE 450
Query: 152 MFSQMLRASIKPDEVAYVGVLSACTH 177
+F +M I D V VG+ SAC +
Sbjct: 451 LFREMQNQGIPGDRVTMVGIASACGY 476
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 27/167 (16%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V + G A F +M +RD WTA I A+ LF EM +
Sbjct: 503 TALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVK 562
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDK-NKVKNDIFAGNALIDMYCICADVEKAQK 128
D+ V++LTA ++ ++D G + ++K + ++ I ++D+
Sbjct: 563 PDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDL------------ 610
Query: 129 DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
L +G ++A+D+ M I+P++V + +L+AC
Sbjct: 611 -----------LGRAGLLEEAVDLIQSM---PIEPNDVVWGSLLAAC 643
>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 116/186 (62%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SWT++V+ Y G V+ AR+ FD+MP R+ W+ MI+GY + N F +A+ LF
Sbjct: 180 MPFRDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLF 239
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M+ ++ +E +VS++++ A+L AL+ GE Y+ K+ + ++ G AL+DMY C
Sbjct: 240 ELMKREGVVANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRC 299
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++EKA KD SW+++I GLA+ G+ KA+ FSQM+R P ++ VL
Sbjct: 300 GEIEKAIRVFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVL 359
Query: 173 SACTHN 178
SAC+H
Sbjct: 360 SACSHG 365
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 75/188 (39%), Gaps = 39/188 (20%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88
F Q+ + ++ +I + +A + +M S I D T ++ A + +
Sbjct: 76 FSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMECV 135
Query: 89 DLGEWIKTYIDKNKVKNDIFAGNALIDM-------------------------------Y 117
+GE + I + +ND++ N+L+ M Y
Sbjct: 136 VVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGY 195
Query: 118 CICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
C C VE A ++ F+W+ MI G A + +KA+D+F M R + +E V
Sbjct: 196 CKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMV 255
Query: 170 GVLSACTH 177
V+S+C H
Sbjct: 256 SVISSCAH 263
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 48/87 (55%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
++I TA+V Y G+++ A + F+++P++D + W+++I G +A+ F +M
Sbjct: 285 NLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMV 344
Query: 65 TSNIMGDEFTIVSILTARANLRALDLG 91
+ T+ ++L+A ++ +D G
Sbjct: 345 RLGFSPRDITLTAVLSACSHGGLVDKG 371
>gi|356502600|ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 518
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 115/186 (61%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +SW+ ++S Y G VD AR FD+ PE+D +W AMI GY++ + F+E L LF
Sbjct: 166 MPRLSAVSWSVMISGYAKVGDVDSARLFFDEAPEKDRGIWGAMISGYVQNSCFKEGLYLF 225
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ +Q ++++ DE VSIL+A A+L ALD+G WI Y+++ V I +L+DMY C
Sbjct: 226 RLLQLTHVVPDESIFVSILSACAHLGALDIGIWIHRYLNRKTVSLSIRLSTSLLDMYAKC 285
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++E A ++D W MI GLA+ G+G AL MFS+M + IKPD++ ++ V
Sbjct: 286 GNLELAKRLFDSMPERDIVCWNAMISGLAMHGDGASALKMFSEMEKTGIKPDDITFIAVF 345
Query: 173 SACTHN 178
+AC+++
Sbjct: 346 TACSYS 351
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 81/198 (40%), Gaps = 39/198 (19%)
Query: 19 RGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSI 78
+G + A + F+++ + +I +L F +F +M + + D +TI +
Sbjct: 52 QGSLTYACRVFERIHHPTLCICNTIIKTFLVNGNFYGTFHVFTKMLHNGLGPDNYTIPYV 111
Query: 79 LTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDK 130
L A A LR LG+ + Y K + DIF GN+L+ MY +C DV E +
Sbjct: 112 LKACAALRDCSLGKMVHGYSSKLGLVFDIFVGNSLMAMYSVCGDVIAARHVFDEMPRLSA 171
Query: 131 FSWTTMIVGLAISGNGDKA-------------------------------LDMFSQMLRA 159
SW+ MI G A G+ D A L +F +
Sbjct: 172 VSWSVMISGYAKVGDVDSARLFFDEAPEKDRGIWGAMISGYVQNSCFKEGLYLFRLLQLT 231
Query: 160 SIKPDEVAYVGVLSACTH 177
+ PDE +V +LSAC H
Sbjct: 232 HVVPDESIFVSILSACAH 249
>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Glycine max]
Length = 1116
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 114/190 (60%), Gaps = 12/190 (6%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ D+ SW AI+ G + IAR+ FDQMPE++ + W+ MI GY+ ++ AL+LF
Sbjct: 121 ITQPDLPSWNAIIHANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLF 180
Query: 61 QEMQT---SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
+ +QT S + +EFT+ S+L+A A L AL G+W+ YIDK +K D+ G +LIDMY
Sbjct: 181 RSLQTLEGSQLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMY 240
Query: 118 CICADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
C +E+A +KD +W+ MI ++ G ++ L++F++M+ ++P+ V +
Sbjct: 241 AKCGSIERAKCIFDNLGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTF 300
Query: 169 VGVLSACTHN 178
V VL AC H
Sbjct: 301 VAVLCACVHG 310
>gi|347954496|gb|AEP33748.1| chloroplast biogenesis 19, partial [Capsella bursa-pastoris]
Length = 489
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++K+ ++W ++ Y+ GQVD A + FD+MPERD + WTAMI+G+++ EAL F
Sbjct: 124 MEDKNSVTWNTMIDGYMRNGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALAWF 183
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ S + D I++ L A NL AL G W+ Y+ KN++ N+LID+YC C
Sbjct: 184 REMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVKVSNSLIDLYCRC 243
Query: 121 ADVEKAQK--DKF------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VE A++ DK SW ++IVG A +GN ++L F +M KPD V + G L
Sbjct: 244 GCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGAL 303
Query: 173 SACTH 177
+AC+H
Sbjct: 304 TACSH 308
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 28/170 (16%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y G V+ AR+ FD+M +R V W ++I G+ E+L F++MQ
Sbjct: 235 SLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKP 294
Query: 71 DEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
D T LTA +++ ++ G + +T +++ I L+D+Y
Sbjct: 295 DAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLY------------ 342
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC-THN 178
+ +G ++AL + M +KP+EV +L+AC TH
Sbjct: 343 -----------SRAGRLEEALKVVQSM---PMKPNEVVIGSLLAACRTHG 378
>gi|224136482|ref|XP_002326871.1| predicted protein [Populus trichocarpa]
gi|222835186|gb|EEE73621.1| predicted protein [Populus trichocarpa]
Length = 581
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 116/186 (62%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++VISWT+++ Y N G V AR FD MPE++ V W AMI GY + + EAL LF
Sbjct: 225 MPERNVISWTSMIYGYCNNGDVLSARFLFDAMPEKNLVSWNAMIGGYCQNKQPHEALKLF 284
Query: 61 QEMQTSNIM-GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+E+Q+S + +E T+VSIL A A L AL+LGEW+ ++ + K+ + +L+DMY
Sbjct: 285 RELQSSTVFEPNEVTVVSILPAIATLGALELGEWVHRFVQRKKLDAAVNVCTSLVDMYLK 344
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C ++ KA +K+ +W +I G A++G +AL+ FS+M + IKP+++ GV
Sbjct: 345 CGEISKARKVFSEIPKKETATWNALINGFAMNGLASEALEAFSEMQQEGIKPNDITMTGV 404
Query: 172 LSACTH 177
LSAC+H
Sbjct: 405 LSACSH 410
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 27/184 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ TA+V Y G + +AR+ F+ MP+R V WTA+I GY+R A LF+ M
Sbjct: 136 DMYVSTALVDMYAKFGNLGLARKVFNDMPDRSLVSWTALIGGYVRRGDMGNAWFLFKLMP 195
Query: 65 TS-----NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
N++ D + V + E ++ D+ +N + + ++I YC
Sbjct: 196 GRDSAAFNLLIDGYVKVGDM------------ESARSLFDEMPERN-VISWTSMIYGYCN 242
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI-KPDEVAYVG 170
DV A +K+ SW MI G + +AL +F ++ +++ +P+EV V
Sbjct: 243 NGDVLSARFLFDAMPEKNLVSWNAMIGGYCQNKQPHEALKLFRELQSSTVFEPNEVTVVS 302
Query: 171 VLSA 174
+L A
Sbjct: 303 ILPA 306
>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
Length = 738
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 109/187 (58%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ KD++SWT ++ Y G D AR+ FD MP D W A+I Y + + +EAL +F
Sbjct: 293 MEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIF 352
Query: 61 QEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+E+Q N +E T+ S L A A L A+DLG WI YI K +K + +LIDMY
Sbjct: 353 RELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSK 412
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C +EKA ++D F W+ MI GLA+ G+G A+D+FS+M +KP+ V + +
Sbjct: 413 CGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNL 472
Query: 172 LSACTHN 178
L AC+H+
Sbjct: 473 LCACSHS 479
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 8/165 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ +++ Y + G +D A F ++ E+D V W +MI G+++ EAL LF+ M+
Sbjct: 165 DLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMK 224
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
N + T+V +L+A A L+ G W YI++N + ++ NA++DMY C +E
Sbjct: 225 MENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLE 284
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI 161
A +KD SWTTMI G A G+ D A +F M R I
Sbjct: 285 DARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDI 329
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 9/165 (5%)
Query: 21 QVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF-QEMQTSNIMGDEFTIVSIL 79
+D A + FDQ+P + W +I + + + L +F Q + S + +T ++
Sbjct: 79 SLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVI 138
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKF 131
A + +L G+ I + K +D+F N+LI Y D++ A +KD
Sbjct: 139 KAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIV 198
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
SW +MI G G+ ++AL +F +M + +P+ V VGVLSAC
Sbjct: 199 SWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACA 243
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T+++ Y G ++ A + F + RD +W+AMI G R A+ LF +MQ + +
Sbjct: 404 TSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVK 463
Query: 70 GDEFTIVSILTARANLRALDLG 91
+ T ++L A ++ +D G
Sbjct: 464 PNAVTFTNLLCACSHSGLVDEG 485
>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats.
Identities = 72/182 (39%), Positives = 112/182 (61%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+D +SW +++ Y G++++A + F+ MPER+ + WT+MI G + + +EAL LF M
Sbjct: 182 RDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRM 241
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
QT+ I D +VS L A A+L LD G+WI YI K++++ D G LIDMY C D+
Sbjct: 242 QTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDL 301
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E+A +K WT MI G AI G G +AL+ F +M A ++P+++ + G+L+AC
Sbjct: 302 EEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTAC 361
Query: 176 TH 177
+H
Sbjct: 362 SH 363
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 54/197 (27%), Positives = 86/197 (43%), Gaps = 39/197 (19%)
Query: 18 NRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVS 77
N G + AR FD++ + +W MI GY EAL L+ M ++ + +T
Sbjct: 64 NSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPF 123
Query: 78 ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNAL------------------------ 113
+L A +++ AL+ + I +I K ++I+ N+L
Sbjct: 124 LLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRD 183
Query: 114 -------IDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158
ID Y C ++E A +++ SWT+MI G +G +AL++F +M
Sbjct: 184 TVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQT 243
Query: 159 ASIKPDEVAYVGVLSAC 175
A IK D VA V L AC
Sbjct: 244 AGIKLDNVALVSTLQAC 260
>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats.
Identities = 72/182 (39%), Positives = 112/182 (61%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+D +SW +++ Y G++++A + F+ MPER+ + WT+MI G + + +EAL LF M
Sbjct: 182 RDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRM 241
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
QT+ I D +VS L A A+L LD G+WI YI K++++ D G LIDMY C D+
Sbjct: 242 QTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDL 301
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E+A +K WT MI G AI G G +AL+ F +M A ++P+++ + G+L+AC
Sbjct: 302 EEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTAC 361
Query: 176 TH 177
+H
Sbjct: 362 SH 363
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 53/197 (26%), Positives = 85/197 (43%), Gaps = 39/197 (19%)
Query: 18 NRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVS 77
N G + AR FD++ + +W MI GY EAL L+ M ++ + +T
Sbjct: 64 NSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPF 123
Query: 78 ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNAL------------------------ 113
+L A +++ A + + I +I K ++I+ N+L
Sbjct: 124 LLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRD 183
Query: 114 -------IDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158
ID Y C ++E A +++ SWT+MI G +G +AL++F +M
Sbjct: 184 TVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQT 243
Query: 159 ASIKPDEVAYVGVLSAC 175
A IK D VA V L AC
Sbjct: 244 AGIKLDNVALVSTLQAC 260
>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 775
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 111/181 (61%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ISW +++S Y+ G + A F MPE+D V W+AMI GY + F EAL LFQEMQ
Sbjct: 336 DLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQ 395
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ DE +VS ++A +L LDLG+WI YI +NK++ ++ LIDMY C VE
Sbjct: 396 LHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVE 455
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A +K +W +I+GLA++G+ +++L+MF+ M + P+E+ ++GVL AC
Sbjct: 456 NALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACR 515
Query: 177 H 177
H
Sbjct: 516 H 516
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 102/246 (41%), Gaps = 73/246 (29%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPER----------------------------- 35
D++SW +++ Y+ G+V+ A + F+ MPER
Sbjct: 170 DLVSWNTLLAGYVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVR 229
Query: 36 ----DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLG 91
D V W+AM+ Y + EAL LF EM+ S + DE +VS L+A + + +++G
Sbjct: 230 GRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMG 289
Query: 92 EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA------------------------- 126
W+ K V++ + NALI +Y C ++ A
Sbjct: 290 RWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLR 349
Query: 127 ---------------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
+KD SW+ MI G A +AL +F +M ++PDE A V
Sbjct: 350 CGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSA 409
Query: 172 LSACTH 177
+SACTH
Sbjct: 410 ISACTH 415
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 29/172 (16%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV +++ Y G V AR+ F++ P D V W ++ GY++ EA +F+ M
Sbjct: 139 DVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGEVEEAERVFEGMP 198
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
N + I L R K ++K + IF G V
Sbjct: 199 ERNTIASNSMIA--LFGR------------KGCVEKAR---RIFNG------------VR 229
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
++D SW+ M+ + G++AL +F +M + + DEV V LSAC+
Sbjct: 230 GRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACS 281
Score = 42.4 bits (98), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 59/137 (43%), Gaps = 9/137 (6%)
Query: 29 FDQMPERDYVLWTAMIDGYLRV-NRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRA 87
F+ + + W ++ +L + N +AL ++ S+ D +T +L A +
Sbjct: 61 FNHLRNPNTFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAARVS 120
Query: 88 LDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTMIVG 139
G + + + D++ N L+++Y +C V A++ D SW T++ G
Sbjct: 121 EFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAG 180
Query: 140 LAISGNGDKALDMFSQM 156
+G ++A +F M
Sbjct: 181 YVQAGEVEEAERVFEGM 197
>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
Length = 563
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 113/177 (63%), Gaps = 8/177 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+++V+ Y ++ IAR+ FD++ ER+ V W+AM+ GY R+ EAL +F+EMQ I
Sbjct: 131 SSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYARLGMINEALIMFREMQVVGIE 190
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-- 127
DE ++V +L+A A + ALD+G+W+ YI K + D+ ALI+MY C +EKA+
Sbjct: 191 PDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINMYAKCGCIEKAREI 250
Query: 128 ------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
KD +W++MIVGLAI G + AL++FS+M A KP+ V ++G+LSAC H
Sbjct: 251 FDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFIGILSACAHG 307
>gi|242052493|ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
gi|241927367|gb|EES00512.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
Length = 506
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 117/185 (63%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV++W +++ Y+ G + AR+ FD MPER+ V WT +I GY ++ R EA+ +F
Sbjct: 140 MAVRDVVAWNVMIAGYVKAGDLAHARELFDAMPERNVVSWTTVIGGYAQMRRPEEAVEVF 199
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ MQ I D ++S+L+A +L A+DLGEW+ ++ + ++ +I N++IDMY C
Sbjct: 200 RRMQVEGIEPDGVALLSVLSACGDLGAVDLGEWVHRFVVRRGLRQEIPLMNSIIDMYMKC 259
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+EKA +K +WTT+I G A+ G G +A++MF +M R ++ P++V ++ +L
Sbjct: 260 GCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQAVEMFRRMERENMAPNDVTFLAIL 319
Query: 173 SACTH 177
SAC+H
Sbjct: 320 SACSH 324
>gi|255556578|ref|XP_002519323.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541638|gb|EEF43187.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 396
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 108/186 (58%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ ISWT ++S Y G VD A + F MPER+ W AMI Y++ NRF E+ LF
Sbjct: 205 MPEQNFISWTTLISGYSQWGLVDEAFRVFQSMPERNSASWNAMIAAYVQGNRFHESFALF 264
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M+ ++ D+F ++L+A L AL+ G+WI YI+K ++ D A+IDMYC C
Sbjct: 265 DRMRAEGVVLDKFVAATMLSACTGLGALEQGKWIHGYIEKKGIEKDSKLATAIIDMYCKC 324
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+EKA K SW MI GLA+ G G+ A+++F +M + + PD + +V +L
Sbjct: 325 GSLEKALEVFKGLPHKGISSWNCMIGGLAMHGKGEAAIELFKEMEKEMLAPDRITFVNLL 384
Query: 173 SACTHN 178
SAC H+
Sbjct: 385 SACAHS 390
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 8/162 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+K V++ S N + A + FD +P D + +I YL+ ++ L+
Sbjct: 75 DKHVMTQLINFSALSNNRDLAYAIKLFDSIPNPDAFFYNTIIKAYLQHLSPTNSILLYSH 134
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M ++ ++FT S++ A + LG+ I ++ K + + N LI MY
Sbjct: 135 MLQHSVFPNDFTFPSVIRACCIHDDIQLGKQIHAHVLKLGFGAHVISLNNLIHMYARFQA 194
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
E+A +++ SWTT+I G + G D+A +F M
Sbjct: 195 FEEARCVLYSMPEQNFISWTTLISGYSQWGLVDEAFRVFQSM 236
>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 114/186 (61%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMP-ERDYVLWTAMIDGYLRVNRFREALTL 59
M NK V+SW ++ Y A + F +M + W MI+G++ + + EAL+L
Sbjct: 136 MVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSL 195
Query: 60 FQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
F EMQ S + GD+ T+ S+L A +L AL+LG+W+ YI+K K++ D+ G AL+DMY
Sbjct: 196 FNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAK 255
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C +E A +KD +WT +IVGLA+ G G KAL++F +M + +KPD + +VGV
Sbjct: 256 CGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGV 315
Query: 172 LSACTH 177
L+AC+H
Sbjct: 316 LAACSH 321
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 78/171 (45%), Gaps = 25/171 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV TA+V Y G ++ A + F +MPE+D + WTA+I G + +AL LF EMQ
Sbjct: 242 DVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQ 301
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
S + D T V +L A ++ ++ G I N++ + Y I +E
Sbjct: 302 MSEVKPDAITFVGVLAACSHAGLVNEG---------------IAYFNSMPNKYGIQPSIE 346
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ L +G +A D+ M A PD VG+LSAC
Sbjct: 347 H-------YGCMVDMLGRAGRIAEAEDLIQNMPMA---PDYFVLVGLLSAC 387
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 79/200 (39%), Gaps = 43/200 (21%)
Query: 18 NRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVS 77
+ G + AR F+Q+P ++I GY N R+A+ +Q M + D FT S
Sbjct: 24 DSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPS 83
Query: 78 ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--DK----- 130
+ + L G+ + + K +D + N L++MY C + A+K DK
Sbjct: 84 LFKSCG---VLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKS 140
Query: 131 ---------------------------------FSWTTMIVGLAISGNGDKALDMFSQML 157
F W MI G + ++AL +F++M
Sbjct: 141 VVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQ 200
Query: 158 RASIKPDEVAYVGVLSACTH 177
+ +K D+V +L ACTH
Sbjct: 201 LSGVKGDKVTMASLLIACTH 220
>gi|115477124|ref|NP_001062158.1| Os08g0500600 [Oryza sativa Japonica Group]
gi|42407356|dbj|BAD08817.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|42407750|dbj|BAD08896.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113624127|dbj|BAF24072.1| Os08g0500600 [Oryza sativa Japonica Group]
Length = 429
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 118/189 (62%), Gaps = 11/189 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++SW A++ Y +D AR+ FD MPE+D V WT MI GY + R+++ L LF
Sbjct: 114 MPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELF 173
Query: 61 QEMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK--VKNDIFAGNALIDMY 117
+ MQT SN+ +E T+VS+L+A ANL AL+ G W+ +IDK+K + N+ G ALIDMY
Sbjct: 174 RAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMY 233
Query: 118 CICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
C + A +K+ +W +I LA++GN ++D F QM R KP+++ +V
Sbjct: 234 AKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPNDITFV 293
Query: 170 GVLSACTHN 178
GVL+AC+H
Sbjct: 294 GVLTACSHG 302
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 95/182 (52%), Gaps = 15/182 (8%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+SW ++ Y+ G+++ A++ FD+MP R+ V W+ M+ GY A +F M
Sbjct: 23 DVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMP 82
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
I + T S++T A L L + D+ V+N + + NA++ Y + +D++
Sbjct: 83 A--IGRNVVTWNSMVTGFARHGLLPLA---RKMFDEMPVRN-LVSWNAMLRGYSVNSDMD 136
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGVLSAC 175
A +KD SWT MI G A +G L++F M ++++P+EV V VLSAC
Sbjct: 137 GARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSAC 196
Query: 176 TH 177
+
Sbjct: 197 AN 198
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
A++ Y G+ DIA + F+ + ++ W A+I R+++ F++M+ +
Sbjct: 227 AALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEK 286
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
++ T V +LTA ++ +D G ++ V+ ++ ++DM +E+A++
Sbjct: 287 PNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEE 346
>gi|242054761|ref|XP_002456526.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
gi|241928501|gb|EES01646.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
Length = 552
Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats.
Identities = 77/178 (43%), Positives = 110/178 (61%), Gaps = 9/178 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQM-PERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI 68
T +++ Y QV +AR FD M P++ V W+AMI+GY RV EAL LF+EMQ +
Sbjct: 165 TGLLNLYAKCEQVALARTVFDGMAPDKSLVAWSAMINGYSRVGMVTEALGLFREMQAVGV 224
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA-- 126
DE T+V +++A A ALDLG+W+ YID+ + D+ ALIDMY C +E+A
Sbjct: 225 EPDEVTMVGVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARG 284
Query: 127 ------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+KD +W+ MIVG AI G + AL +FS+ML ++P+ V ++GVLSAC H+
Sbjct: 285 VFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHS 342
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 10/178 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ Y G ++ AR FD M E+D W+AMI G+ +AL LF M +
Sbjct: 267 TALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVR 326
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
+ T + +L+A A+ +D G + + +K + +ID+ C ++ A
Sbjct: 327 PNNVTFIGVLSACAHSGLVDDGRRYWSIMQNLGIKPSMENYGCMIDLLCRSGLLDDAYSF 386
Query: 127 ------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+ W T++V S D A ++L E YV + + C N
Sbjct: 387 VIDMPISPNSIIWRTLLVACKSSNRIDIAESASKRLLELEPHNPE-NYVLLSNLCASN 443
>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 705
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 110/162 (67%), Gaps = 8/162 (4%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A++ FD+ P +D V W+AMI GY R A+TLF+EMQ + + DE T+VS+L+A A+
Sbjct: 286 AKKVFDESPVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACAD 345
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTM 136
L AL+LG+W+++YI++ + + NALIDM+ C DV++A K SWT+M
Sbjct: 346 LGALELGKWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSM 405
Query: 137 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
IVGLA+ G G +A+ +F +M+ + PD+VA++GVLSAC+H+
Sbjct: 406 IVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHS 447
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 14/157 (8%)
Query: 33 PERDYVLWTAMIDGYLRVNRFR-EALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLG 91
P D L+ +I + + + AL + M+ + ++FT +L A A + L+LG
Sbjct: 187 PSHDAFLFNTLIRAFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELG 246
Query: 92 EWIKTYIDKNKVKNDIFAGNALIDMYCICAD-------------VEKAQKDKFSWTTMIV 138
+ + K + D N L+ MYC C E KD +W+ MI
Sbjct: 247 GAVHASMVKFGFEEDPHVRNTLVHMYCCCCQDGSSGPVSAKKVFDESPVKDSVTWSAMIG 306
Query: 139 GLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
G A +GN +A+ +F +M + PDE+ V VLSAC
Sbjct: 307 GYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSAC 343
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 76/165 (46%), Gaps = 25/165 (15%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ + G VD A + F +M R V WT+MI G R EA+ +F EM +
Sbjct: 373 ALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDP 432
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDK 130
D+ + +L+A ++ +D G + Y N + +M+ I +E
Sbjct: 433 DDVAFIGVLSACSHSGLVDKGHY---YF------------NTMENMFSIVPKIEH----- 472
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ L+ +G ++AL+ M ++P++V + +++AC
Sbjct: 473 --YGCMVDMLSRAGRVNEALEFVRAM---PVEPNQVIWRSIVTAC 512
>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 110/185 (59%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K++ SW +++ G + AR+ FD+M ERD + W++M+DGY+ R++EAL +F
Sbjct: 223 MPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIF 282
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
Q+MQ F + S+L A +N+ A+D G W+ Y+ +N +K D G AL+DMY C
Sbjct: 283 QQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKC 342
Query: 121 ADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ E +++ F+W MI GLAI G + AL++FS++ +KP+ + VGVL
Sbjct: 343 GRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVL 402
Query: 173 SACTH 177
+AC H
Sbjct: 403 TACAH 407
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 32/172 (18%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV +A + Y + G+++ AR+ F E D V W MIDGYL+ A LF +M
Sbjct: 166 DVHIKSAGIHMYASFGRLEDARKMF-YSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMP 224
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
NI G W N + N + G L D + E
Sbjct: 225 VKNI----------------------GSW-------NVMINGLAKGGNLGDARKLFD--E 253
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+++D+ SW++M+ G +G +AL++F QM R +P VL+AC+
Sbjct: 254 MSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACS 305
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 79/171 (46%), Gaps = 25/171 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + TA++ Y G++D+ + F++M ER+ W AMI G R +AL LF ++Q
Sbjct: 328 DAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQ 387
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ + T+V +LTA A+ +D G ++ + + + Y + ++E
Sbjct: 388 EGRMKPNGITLVGVLTACAHAGFVDKG--LRIF-------------QTMREFYGVDPELE 432
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ L SG +A D+ + M +KP+ + +L AC
Sbjct: 433 H-------YGCMVDLLGRSGLFSEAEDLINSM---PMKPNAAVWGALLGAC 473
>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
Length = 582
Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 70/181 (38%), Positives = 114/181 (62%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D ++ +++ Y G++ AR FD+MP R+ V W+AM++GY++ REAL +F MQ
Sbjct: 142 DASTFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQ 201
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
++ D+ +V +L A A AL+ G+W+ Y+ + +K ++F G AL+DMY C +V+
Sbjct: 202 AEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQ 261
Query: 125 KAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A K+ +WTTMI GLA+ G G +A+ +F+QM + I+PD++A++GVL ACT
Sbjct: 262 LAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACT 321
Query: 177 H 177
H
Sbjct: 322 H 322
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G+V +A F++M ++ + WT MI G R EA+ LF +M++S I
Sbjct: 248 TALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIR 307
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDM 116
D+ + +L A + +D G E + + K +K I ++D+
Sbjct: 308 PDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDL 355
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
E ++ SW+ M+ G +G+G +AL +F++M ++PD+ VGVL+AC +
Sbjct: 168 EMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVLVGVLAACAQH 222
>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 110/185 (59%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K++ SW +++ G + AR+ FD+M ERD + W++M+DGY+ R++EAL +F
Sbjct: 223 MPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIF 282
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
Q+MQ F + S+L A +N+ A+D G W+ Y+ +N +K D G AL+DMY C
Sbjct: 283 QQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKC 342
Query: 121 ADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ E +++ F+W MI GLAI G + AL++FS++ +KP+ + VGVL
Sbjct: 343 GRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVL 402
Query: 173 SACTH 177
+AC H
Sbjct: 403 TACAH 407
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 32/172 (18%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV +A + Y + G+++ AR+ F E D V W MIDGYL+ A LF +M
Sbjct: 166 DVHIKSAGIQMYASFGRLEDARKMF-YSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMP 224
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
NI G W N + N + G L D + E
Sbjct: 225 VKNI----------------------GSW-------NVMINGLAKGGNLGDARKLFD--E 253
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+++D+ SW++M+ G +G +AL++F QM R +P VL+AC+
Sbjct: 254 MSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACS 305
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 79/171 (46%), Gaps = 25/171 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + TA++ Y G++D+ + F++M ER+ W AMI G R +AL LF ++Q
Sbjct: 328 DAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQ 387
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ + T+V +LTA A+ +D G ++ + + + Y + ++E
Sbjct: 388 EGRMKPNGITLVGVLTACAHAGFVDKG--LRIF-------------QTMREFYGVDPELE 432
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ L SG +A D+ + M +KP+ + +L AC
Sbjct: 433 H-------YGCMVDLLGRSGLFSEAEDLINSM---PMKPNAAVWGALLGAC 473
>gi|297843364|ref|XP_002889563.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
gi|297335405|gb|EFH65822.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
Length = 500
Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 110/185 (59%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++K+ ++W ++ Y+ GQVD A + FD+MPERD + WTAMI+G++ EAL F
Sbjct: 135 MEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVNKGFHEEALAWF 194
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ S + D I++ L A NL AL G W+ Y+ KN++ N+LID+YC C
Sbjct: 195 REMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVRVSNSLIDLYCRC 254
Query: 121 ADVEKAQK--DKF------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VE A++ DK SW ++IVG A +GN ++L F +M KPD V + G L
Sbjct: 255 GCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEERFKPDAVTFTGAL 314
Query: 173 SACTH 177
+AC+H
Sbjct: 315 TACSH 319
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 27/169 (15%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y G V+ ARQ FD+M +R V W ++I G+ E+L F++MQ
Sbjct: 246 SLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEERFKP 305
Query: 71 DEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
D T LTA +++ ++ G + + I ++ I L+D+Y
Sbjct: 306 DAVTFTGALTACSHVGLVEEGLRYFQIMISDYRISPRIEHYGCLVDLY------------ 353
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+ +G + AL + M +KP+EV +L+AC ++
Sbjct: 354 -----------SRAGRLEDALKLVQSM---PMKPNEVVIGSLLAACRNH 388
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ ++ SWT+ I L +G +A FS M A ++P+ + ++ +LS C
Sbjct: 30 QSTSENTVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIAILSGC 81
>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
Length = 538
Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 112/186 (60%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NKDV+SW +++ Y + G V + F++MPER+ W A+I GY R F E L+ F
Sbjct: 174 MPNKDVMSWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAF 233
Query: 61 QEMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+ M ++ ++ T+V++L+A A L ALDLG+W+ Y + + K +++ NAL+DMY
Sbjct: 234 KRMLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAK 293
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C VE A KD SW T+I GLA+ G+G AL++FS M A PD + ++G+
Sbjct: 294 CGVVETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGI 353
Query: 172 LSACTH 177
L ACTH
Sbjct: 354 LCACTH 359
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 8/123 (6%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A + FDQ+PE + +W AM GY + ++ + LF++M+ ++M + FT IL +
Sbjct: 4 AHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSCVK 63
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTM 136
+ AL GE + ++ K+ + + F LIDMY + A +++ +WT M
Sbjct: 64 INALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWTAM 123
Query: 137 IVG 139
I G
Sbjct: 124 ING 126
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 17/176 (9%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T ++ Y + G + A + F +M ER+ + WTAMI+GY+ A LF +I+
Sbjct: 90 TTLIDMYASGGAIHAAYRVFGEMIERNVIAWTAMINGYITCCDLVTARRLFDLAPERDIV 149
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV------ 123
I + A+ +RA +L DK K D+ + N +++ Y DV
Sbjct: 150 LWNTMISGYIEAKDVIRAREL-------FDKMPNK-DVMSWNTVLNGYASNGDVMACERL 201
Query: 124 --EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGVLSACT 176
E +++ FSW +I G +G + L F +ML ++ P++ V VLSAC
Sbjct: 202 FEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACA 257
>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Vitis vinifera]
Length = 464
Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 119/216 (55%), Gaps = 39/216 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRV---------- 50
M +DV +WT ++S + G + ARQ FD+MP R+ W AMIDGY R+
Sbjct: 71 MSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDGYSRLRNVESAELLF 130
Query: 51 ---------------------NRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALD 89
+FREAL +F EMQT+ I DE T+ +I++A A+L ALD
Sbjct: 131 SQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATIISACAHLGALD 190
Query: 90 LGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLA 141
LG+ I Y + D++ G+ALIDMY C ++K+ +K+ F W ++I GLA
Sbjct: 191 LGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGLA 250
Query: 142 ISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+ G ++AL MFS+M R IKP+ V ++ VL ACTH
Sbjct: 251 VHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTH 286
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 16/145 (11%)
Query: 41 TAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK 100
TA++D Y + EA +F EM ++ F ++++ A R D+ + D+
Sbjct: 49 TALVDFYGNAGKIVEARRVFDEMSERDV----FAWTTMISVHA--RTGDMSS-ARQLFDE 101
Query: 101 NKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDM 152
V+N + NA+ID Y +VE A+ +D SWTTMI + + +AL +
Sbjct: 102 MPVRNTA-SWNAMIDGYSRLRNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAV 160
Query: 153 FSQMLRASIKPDEVAYVGVLSACTH 177
F++M I PDEV ++SAC H
Sbjct: 161 FNEMQTNGIDPDEVTMATIISACAH 185
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M + + FT S++ A + + L GE + +I K + +F AL+D Y
Sbjct: 1 MVQAQVSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGK 60
Query: 123 V--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
+ E +++D F+WTTMI A +G+ A +F +M
Sbjct: 61 IVEARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEM 102
>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
Length = 1130
Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 112/190 (58%), Gaps = 12/190 (6%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ D+ SW +I++ G VD+AR F MPER+ + W+ MI+GY+R +++EAL LF
Sbjct: 125 IPQPDLPSWNSIINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALF 184
Query: 61 QEMQ---TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
+EMQ +++ +EFT+ +L A L AL+ G+W YIDK + D+ G ALIDMY
Sbjct: 185 REMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMY 244
Query: 118 CICADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
C VEKA KD +W+ MI GLA+ G ++ + +FS+M+ ++P+ V +
Sbjct: 245 AKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTF 304
Query: 169 VGVLSACTHN 178
+ V AC H
Sbjct: 305 LAVFCACVHG 314
>gi|413922815|gb|AFW62747.1| hypothetical protein ZEAMMB73_141955 [Zea mays]
Length = 301
Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD++S TA+VSRY +V+IAR FD MPE+D V W+AMI GY+ N+ EAL+LF
Sbjct: 71 MPRKDLVSSTAMVSRYARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDSNQPNEALSLF 130
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
MQ I DE T++S+++A ANL +L+ +WI +I N + + NALIDM+ C
Sbjct: 131 NGMQECGIRSDEVTMLSVISACANLGSLNKAKWIHAFIKNNGLNKVLHICNALIDMFAKC 190
Query: 121 ADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ E K+ +WT+MI A+ G+G +L +F QM +P+EV ++ +L
Sbjct: 191 GGINLALNVFNEMPLKNVITWTSMISAFAMHGDGKSSLRLFEQMKDEGAEPNEVTFLSLL 250
Query: 173 SACTH 177
AC H
Sbjct: 251 YACCH 255
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 39/153 (25%)
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M+ S ++ D+ + ++L A ++R L +G+ I +Y+ + + +ALI +Y CA+
Sbjct: 1 MKNSGVVPDQLILATVLPACGHIRHLRIGKAIHSYMLVSDMIIGAHISSALISLYASCAN 60
Query: 123 VEKA---------------------------------------QKDKFSWTTMIVGLAIS 143
+E A +KD SW+ MI G S
Sbjct: 61 MEMAEKLYNEMPRKDLVSSTAMVSRYARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDS 120
Query: 144 GNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
++AL +F+ M I+ DEV + V+SAC
Sbjct: 121 NQPNEALSLFNGMQECGIRSDEVTMLSVISACA 153
>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 113/185 (61%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D +SW ++S ++ GQ+ AR F++M ++ WTA++ GY R+ + +AL F
Sbjct: 178 MTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFF 237
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ MQ I DE ++VS+L A A L AL+LG+WI Y DK +I NALI+MY C
Sbjct: 238 RRMQMVGIEPDEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKC 297
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+++ ++D SW+TMIVGLA G +A+++F +M +A I+P+ + +VG+L
Sbjct: 298 GSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLL 357
Query: 173 SACTH 177
SAC H
Sbjct: 358 SACAH 362
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 25/172 (14%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+++ A++ Y G +D R+ FDQM ERD + W+ MI G R EA+ LFQEM
Sbjct: 282 RNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEM 341
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
Q + I + T V +L+A A+ L+ G Y + K +I G V
Sbjct: 342 QKAKIEPNIITFVGLLSACAHAGLLNEG---LRYFESMKRDYNIEPG------------V 386
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E + ++ L +SG D+AL++ +M +KPD + +LS+C
Sbjct: 387 EH-------YGCLVNLLGLSGRLDQALELIKKM---PMKPDSAIWGSLLSSC 428
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 44/203 (21%)
Query: 18 NRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN-----IMGDE 72
+ + + A F ++ + + L+ AMI Y + A+T++++M + I D+
Sbjct: 58 HHAETEYANLLFKRVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDK 117
Query: 73 FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK---- 128
FT ++ + A L DLG+ + ++ K K++ N+L++MY C ++ A K
Sbjct: 118 FTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEE 177
Query: 129 ---------------------------------DK--FSWTTMIVGLAISGNGDKALDMF 153
DK FSWT ++ G A G AL+ F
Sbjct: 178 MTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFF 237
Query: 154 SQMLRASIKPDEVAYVGVLSACT 176
+M I+PDE++ V VL AC
Sbjct: 238 RRMQMVGIEPDEISLVSVLPACA 260
>gi|145335149|ref|NP_172066.3| protein pigment defective 247 [Arabidopsis thaliana]
gi|75191933|sp|Q9MA50.1|PPR13_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05750, chloroplastic; AltName: Full=Protein PIGMENT
DEFECTIVE 247; Flags: Precursor
gi|6850304|gb|AAF29381.1|AC009999_1 Contains similarity to a hypothetical protein from Arabidopsis
thaliana gb|AC007109.6, and contains two DUF17 PF|01535
domains [Arabidopsis thaliana]
gi|62320576|dbj|BAD95203.1| hypothetical protein [Arabidopsis thaliana]
gi|332189766|gb|AEE27887.1| protein pigment defective 247 [Arabidopsis thaliana]
Length = 500
Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 109/185 (58%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++K+ ++W ++ Y+ GQVD A + FD+MPERD + WTAMI+G+++ EAL F
Sbjct: 135 MEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWF 194
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ S + D I++ L A NL AL G W+ Y+ KN++ N+LID+YC C
Sbjct: 195 REMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRC 254
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VE A ++ SW ++IVG A +GN ++L F +M KPD V + G L
Sbjct: 255 GCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGAL 314
Query: 173 SACTH 177
+AC+H
Sbjct: 315 TACSH 319
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 27/169 (15%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y G V+ ARQ F M +R V W ++I G+ E+L F++MQ
Sbjct: 246 SLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKP 305
Query: 71 DEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
D T LTA +++ ++ G + + ++ I L+D+Y
Sbjct: 306 DAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLY------------ 353
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+ +G + AL + M +KP+EV +L+AC+++
Sbjct: 354 -----------SRAGRLEDALKLVQSM---PMKPNEVVIGSLLAACSNH 388
>gi|255570475|ref|XP_002526196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534500|gb|EEF36200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 491
Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 109/182 (59%), Gaps = 8/182 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N+DVI+WTA+++ Y+ GQV I R+ FD+MPER+ V W+AMI GY+RV F EAL LF
Sbjct: 174 NRDVITWTALINGYVRAGQVLIGRELFDKMPERNSVSWSAMITGYVRVGFFEEALELFNA 233
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M S + IV + A A+L ALD G WI YI +N++ D G ALIDMY C
Sbjct: 234 MLISGFWPNHAGIVCAINACASLGALDQGRWIHCYIKRNRMDLDRVMGAALIDMYAKCGC 293
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+E A +D +T +I GLA G A+++F +M + P+EV +V VL+A
Sbjct: 294 IEIACSIFGELRNRDVHVYTCLISGLANHGQSATAVELFERMHSEGVVPNEVTFVSVLNA 353
Query: 175 CT 176
C+
Sbjct: 354 CS 355
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 85/212 (40%), Gaps = 46/212 (21%)
Query: 6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT 65
+IS+ A+ S N+ + A + F + R +W +I + N R+A+ LF+ M
Sbjct: 48 IISFCALSS---NQFSLSHAYRLFLGLRHRSTFIWNTVIRAFAEKNEPRKAIMLFKNMLY 104
Query: 66 SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDI--FAGNALIDMYCI--CA 121
SN + + +T + A +L L LG + + K+ + F N L+ M+ I C
Sbjct: 105 SNFLPNNYTYSFLFKACTDLNNLYLG--LACHCQSIKLGWEFYDFVQNGLVHMFAIFGCM 162
Query: 122 DVEK-------------------------------------AQKDKFSWTTMIVGLAISG 144
D + +++ SW+ MI G G
Sbjct: 163 DSARKLFDLSSNRDVITWTALINGYVRAGQVLIGRELFDKMPERNSVSWSAMITGYVRVG 222
Query: 145 NGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
++AL++F+ ML + P+ V ++AC
Sbjct: 223 FFEEALELFNAMLISGFWPNHAGIVCAINACA 254
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + A++ Y G ++IA F ++ RD ++T +I G + A+ LF+ M
Sbjct: 277 DRVMGAALIDMYAKCGCIEIACSIFGELRNRDVHVYTCLISGLANHGQSATAVELFERMH 336
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWI-----KTYIDKNKVKNDIFAGNALIDMYCI 119
+ ++ +E T VS+L A + + +D G I K Y D+ +V++ L+D+
Sbjct: 337 SEGVVPNEVTFVSVLNACSRMGLVDKGLRIFENMSKIYGDEPQVQHY----GCLVDLLGR 392
Query: 120 CADVEKAQK 128
+E+A+K
Sbjct: 393 AGKLEEAKK 401
Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 81/179 (45%), Gaps = 24/179 (13%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPER----DYVLWTAMIDGYLRVNRFREA 56
++N+DV +T ++S N GQ A + F++M + V + ++++ R+ +
Sbjct: 304 LRNRDVHVYTCLISGLANHGQSATAVELFERMHSEGVVPNEVTFVSVLNACSRMGLVDKG 363
Query: 57 LTLFQEMQTSNIMGDEFTI------VSILTARANLRALDLGEWIKTYIDKNKVKNDIFAG 110
L +F+ M S I GDE + V +L L E K + + +K D +
Sbjct: 364 LRIFENM--SKIYGDEPQVQHYGCLVDLLGRAGKL------EEAKKLVKEMPMKPDSYVL 415
Query: 111 NALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
AL++ + DVE ++ S + L++ +G + S M ++ K DEVA V
Sbjct: 416 GALLNASRVYGDVELGEETVES----LAQLSLDHSGVHVV--LSNMYASANKWDEVARV 468
>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
Length = 668
Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 114/185 (61%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ K V+SWT ++ Y G +D+A + F MPE++ V W AMI ++ N EAL LF
Sbjct: 316 MRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELF 375
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ SN+ D+ T++ L+A + L ALD G W YI K+ + D+ G ALIDMY C
Sbjct: 376 REMQWSNMKPDKVTMLHCLSACSQLGALDTGMWTHNYIKKHNLSLDVALGTALIDMYAKC 435
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ KA +++ +WT +I GLA+ GN + A+ FS+M+ + + PDE+ ++GVL
Sbjct: 436 GNMTKALQVFNEMPRRNSLTWTAIIGGLALYGNVNDAIFYFSKMIDSGLMPDEITFLGVL 495
Query: 173 SACTH 177
+AC H
Sbjct: 496 TACCH 500
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 112/213 (52%), Gaps = 39/213 (18%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+KD+ + I+ ++ G+ +A + FD+ RD V W ++I+GY+R + REA+ ++Q+
Sbjct: 186 DKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQPREAMGIYQQ 245
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M T ++ DE T++ +++A A L +L LG I YI+++ + I NAL+DMY C D
Sbjct: 246 MITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKISLVNALMDMYVKCGD 305
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGD--------------------------- 147
+E +K SWTTMIVG A +G D
Sbjct: 306 LEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVVAWNAMIGSCVQA 365
Query: 148 ----KALDMFSQMLRASIKPDEVAYVGVLSACT 176
+AL++F +M +++KPD+V + LSAC+
Sbjct: 366 NLSFEALELFREMQWSNMKPDKVTMLHCLSACS 398
>gi|224134663|ref|XP_002327460.1| predicted protein [Populus trichocarpa]
gi|222836014|gb|EEE74435.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 114/181 (62%), Gaps = 8/181 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+DV++WT ++S Y+N GQV IAR+ FD+MPE++ V W A+I GY+R+ F+EAL +F +M
Sbjct: 176 RDVVTWTCLISGYLNSGQVLIARELFDRMPEKNPVSWGALIAGYVRIGFFKEALEVFYDM 235
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
Q S + +IV LTA A L ALD G WI Y+ ++ + D G ALIDMY C +
Sbjct: 236 QVSGFRLNRASIVGALTACAFLGALDQGRWIHAYVKRHHMSLDRMLGTALIDMYAKCGCI 295
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E A +D +++T +I GLA + A+D+F++M + P+EV +V VL+AC
Sbjct: 296 EMACSVFDEMDDRDVYAFTCLISGLANHDKSEAAIDLFNRMQDEGVVPNEVTFVCVLNAC 355
Query: 176 T 176
+
Sbjct: 356 S 356
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 75/159 (47%), Gaps = 13/159 (8%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ Y G +++A FD+M +RD +T +I G ++ A+ LF MQ ++
Sbjct: 283 TALIDMYAKCGCIEMACSVFDEMDDRDVYAFTCLISGLANHDKSEAAIDLFNRMQDEGVV 342
Query: 70 GDEFTIVSILTARANLRALDLGEWI-KTYIDKNKVKNDIFAGNALIDMYCICADVEKA-- 126
+E T V +L A + + +D G I ++ ++ ++ I L+D+ +E+A
Sbjct: 343 PNEVTFVCVLNACSRMGMVDEGLRIFESMSNRYVIEPQIQHYGCLVDLLGRAGKIEEAKQ 402
Query: 127 -------QKDKFSWTTMIVGLAISGN---GDKALDMFSQ 155
Q D ++ ++ + G+ G++ +D Q
Sbjct: 403 VVREMPLQPDSYTLGALLDACRVHGDVQLGEEMVDSLVQ 441
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 11/164 (6%)
Query: 4 KDVISWTAIVSRYIN---RGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
KD + I+S + + R + A + F + + +W M+ ++ N A +L+
Sbjct: 41 KDPYAAAKIISLHAHSNARSSLFYAERLFLCLQNKSTFIWNTMMQAFVEKNEAVRAFSLY 100
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M SN + + FT ++ A ++ L +G + K ++ F N LI +Y C
Sbjct: 101 KHMLESNYLPNNFTFSFVIRACIDVFNLQMGLCFHGQVVKFGWESYDFVQNGLIHLYANC 160
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
++ A ++D +WT +I G SG A ++F +M
Sbjct: 161 GFMDLARNMFDMSIKRDVVTWTCLISGYLNSGQVLIARELFDRM 204
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/188 (20%), Positives = 75/188 (39%), Gaps = 16/188 (8%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYV----LWTAMIDGYLRVNRFREA 56
++NK W ++ ++ + + A + M E +Y+ ++ +I + V +
Sbjct: 72 LQNKSTFIWNTMMQAFVEKNEAVRAFSLYKHMLESNYLPNNFTFSFVIRACIDVFNLQMG 131
Query: 57 LTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116
L ++ +F ++ AN +DL + D + +K D+ LI
Sbjct: 132 LCFHGQVVKFGWESYDFVQNGLIHLYANCGFMDLA---RNMFDMS-IKRDVVTWTCLISG 187
Query: 117 YCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
Y V A +K+ SW +I G G +AL++F M + + + +
Sbjct: 188 YLNSGQVLIARELFDRMPEKNPVSWGALIAGYVRIGFFKEALEVFYDMQVSGFRLNRASI 247
Query: 169 VGVLSACT 176
VG L+AC
Sbjct: 248 VGALTACA 255
>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
Length = 572
Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 110/185 (59%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD++S TA+V Y + +IAR FD MPE+D V W+AMI GY N+ EAL+LF
Sbjct: 232 MPRKDLVSSTAMVFGYARNRKFEIARYIFDGMPEKDVVSWSAMISGYADSNQPNEALSLF 291
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+MQ I DE T++S+++A ANL +LD +WI +I N + + NALIDM+ C
Sbjct: 292 NDMQECGIRPDEVTMLSVISACANLGSLDKAKWIHAFIKNNGLNKILHICNALIDMFAKC 351
Query: 121 ADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ E QK+ +WT+MI A+ G+G AL +F QM ++P+EV ++ +L
Sbjct: 352 GGINLALNIFNEMPQKNVITWTSMITAFAMHGDGKSALCLFEQMRNEGVEPNEVTFLNLL 411
Query: 173 SACTH 177
AC H
Sbjct: 412 YACCH 416
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 39/206 (18%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G V AR+ FD M RD V W M+D Y + ++EAL F +M+ S ++
Sbjct: 109 TALVGAYAACGCVGDARKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLQFAKMKNSGVL 168
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
D+ + ++L+A ++R L G+ I +Y+ + + + +ALI++Y CA +E A
Sbjct: 169 SDQLILATVLSACGHIRHLRTGKSIHSYMLVSDILINAHLSSALINLYASCASMEMAEKL 228
Query: 127 ------------------------------------QKDKFSWTTMIVGLAISGNGDKAL 150
+KD SW+ MI G A S ++AL
Sbjct: 229 YNGMPRKDLVSSTAMVFGYARNRKFEIARYIFDGMPEKDVVSWSAMISGYADSNQPNEAL 288
Query: 151 DMFSQMLRASIKPDEVAYVGVLSACT 176
+F+ M I+PDEV + V+SAC
Sbjct: 289 SLFNDMQECGIRPDEVTMLSVISACA 314
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 152 bits (383), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 115/182 (63%), Gaps = 8/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+SWT+++ + G V+ AR+ FDQMPE++ V W+ MI GY + N F +A+ LF+ +Q
Sbjct: 184 DVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQ 243
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ + +E +VS++++ A+L AL+LGE Y+ KN + ++ G AL+DMY C ++
Sbjct: 244 SQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSID 303
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
KA ++D SWT +I GLA+ G +++L F+ M+ A + P ++ + VLSAC+
Sbjct: 304 KAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACS 363
Query: 177 HN 178
H
Sbjct: 364 HG 365
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 82/195 (42%), Gaps = 39/195 (20%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81
+D A + F Q+ + ++ AMI G+ +A + + Q ++ D T ++ +
Sbjct: 69 IDYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKS 128
Query: 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI---------------------- 119
L + +G +I K+ + D++ N+L+ MY
Sbjct: 129 CTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSW 188
Query: 120 ---------CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIK 162
C DVE A +K+ +W+TMI G A + + DKA+++F + ++
Sbjct: 189 TSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVR 248
Query: 163 PDEVAYVGVLSACTH 177
+E V V+S+C H
Sbjct: 249 ANETVMVSVISSCAH 263
>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 738
Score = 152 bits (383), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 120/181 (66%), Gaps = 8/181 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+D +S+TA+++ Y+++G +D AR+ FD++P +D V W AMI GY++ RF EA+ F EM
Sbjct: 195 RDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEM 254
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
Q +N++ ++ T+V +L+A + R+ +LG+WI +++ N +++ NALIDMYC C +
Sbjct: 255 QEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGET 314
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ A +KD SW TMI G + ++AL +F MLR+++KP++V ++G+L AC
Sbjct: 315 DIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHAC 374
Query: 176 T 176
Sbjct: 375 A 375
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 109/177 (61%), Gaps = 12/177 (6%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G+ DIAR+ FD + E+D + W MI GY ++ + EAL LF+ M SN+
Sbjct: 303 ALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKP 362
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAG--NALIDMYCICADVEKAQ- 127
++ T + IL A A L ALDLG+W+ YIDKN ++N A +LIDMY C +E A+
Sbjct: 363 NDVTFLGILHACACLGALDLGKWVHAYIDKN-LRNSSNASLWTSLIDMYAKCGCIEAAER 421
Query: 128 -------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI-KPDEVAYVGVLSACT 176
++ SW M+ G A+ G+ ++AL +FS+M+ + +PD++ +VGVLSACT
Sbjct: 422 VFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACT 478
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 9 WTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI 68
WT+++ Y G ++ A + F M R+ W AM+ G+ AL LF EM +
Sbjct: 403 WTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGL 462
Query: 69 M-GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126
D+ T V +L+A +DLG ++ ++ I + + +ID+ E+A
Sbjct: 463 FRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEA 522
Query: 127 Q 127
+
Sbjct: 523 E 523
Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
E KD SW MI G SG ++A+ F +M A++ P++ V VLSAC H
Sbjct: 222 EIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGH 275
>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 116/167 (69%), Gaps = 8/167 (4%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G ++ AR+ FD+MP+ D V WTAMI GY R+ + A+ LF++MQ + + D+ T+VS+L
Sbjct: 159 GGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVL 218
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKF 131
+A +L AL+LG+WI++YI+K +V + NAL+DM+ C DV+KA ++
Sbjct: 219 SACTDLGALELGKWIESYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIV 278
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
SWT++IVGLA+ G G +A+ +F +M + + P+++A++G+LSAC+H+
Sbjct: 279 SWTSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHS 325
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 10/151 (6%)
Query: 36 DYVLWTAMIDGYLRVNRFRE-ALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWI 94
D L++ +I Y ++ + A+ + M I +++ +L A A LR L+LG+ +
Sbjct: 72 DAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLGKAV 131
Query: 95 KTYIDKNKVKNDIFAGNALIDMYCICA-DVEKAQK--------DKFSWTTMIVGLAISGN 145
+ K +DIF N ++ MYC C+ +E A+K D +WT MI G A G
Sbjct: 132 HGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQ 191
Query: 146 GDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A+ +F +M A + PD+V V VLSACT
Sbjct: 192 SAGAVGLFRKMQIAGVCPDDVTMVSVLSACT 222
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 77/165 (46%), Gaps = 25/165 (15%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+V + G VD A F M +R V WT++I G R EA++LF+EM+ S ++
Sbjct: 251 ALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMVP 310
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDK 130
++ + +L+A ++ ++ G + Y + + + I +E
Sbjct: 311 EDIAFIGLLSACSHSGLVERG---RQYFSE------------MTRQFGIVPKIEH----- 350
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ L+ +G +AL+ +M I+P+ + + ++SAC
Sbjct: 351 --YGCMVDLLSRAGLVTEALEFVERM---PIEPNPIIWRTLISAC 390
>gi|242082329|ref|XP_002445933.1| hypothetical protein SORBIDRAFT_07g028280 [Sorghum bicolor]
gi|241942283|gb|EES15428.1| hypothetical protein SORBIDRAFT_07g028280 [Sorghum bicolor]
Length = 498
Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 117/188 (62%), Gaps = 11/188 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++SW A++ Y G++D+AR+ FD MPE+D V WT MI GY + R+ + L LF
Sbjct: 250 MPIRNIVSWNAMLRGYAMNGEMDVARELFDVMPEKDVVSWTCMISGYAQAGRYAQTLELF 309
Query: 61 QEMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK--VKNDIFAGNALIDMY 117
+ MQ+ +I +E T+VS+L+A A+L AL+ G W +IDK+K + N+ G ALIDMY
Sbjct: 310 RTMQSHGDIRPNEVTMVSVLSACAHLTALEEGRWAHVFIDKHKMVLDNEFNLGAALIDMY 369
Query: 118 CICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
C + A QK+ +W +I GLA++ + + +D+F QM + KPD++ +V
Sbjct: 370 AKCGRTDLATKIFHSLDQKNVSAWNALITGLAVNSDARRCIDVFEQMKMSEEKPDDITFV 429
Query: 170 GVLSACTH 177
VL+AC H
Sbjct: 430 SVLTACAH 437
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 87/184 (47%), Gaps = 19/184 (10%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+SW +V Y G++ AR+ FD+MP R+ V W+ M+ Y A +F M
Sbjct: 159 DVVSWNTVVFGYAKCGEIGNARRVFDEMPHRNGVSWSVMVGAYAAAGELDVAREMFDRMP 218
Query: 65 T--SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
NI+ + R L L + D+ ++N I + NA++ Y + +
Sbjct: 219 AIGRNIITWNLMVTGF--GRHGLLPL-----ARKMFDEMPIRN-IVSWNAMLRGYAMNGE 270
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGVLS 173
++ A +KD SWT MI G A +G + L++F M I+P+EV V VLS
Sbjct: 271 MDVARELFDVMPEKDVVSWTCMISGYAQAGRYAQTLELFRTMQSHGDIRPNEVTMVSVLS 330
Query: 174 ACTH 177
AC H
Sbjct: 331 ACAH 334
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
A++ Y G+ D+A + F + +++ W A+I G + R + +F++M+ S
Sbjct: 363 AALIDMYAKCGRTDLATKIFHSLDQKNVSAWNALITGLAVNSDARRCIDVFEQMKMSEEK 422
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
D+ T VS+LTA A+ +D G ++ ++ V+ ++ ++D+ +++A++
Sbjct: 423 PDDITFVSVLTACAHAGLVDEGRQYFQSMSSACGVQPELKHYGCMVDLLGRAGLLDEAEE 482
>gi|297824259|ref|XP_002880012.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325851|gb|EFH56271.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 542
Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 116/186 (62%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M DV++W +I+ G +D A++ FD+MP+R+ V W +MI G++R RF++AL +F
Sbjct: 187 MMGFDVVAWNSIIMGLAKCGLIDQAQKLFDEMPQRNGVSWNSMISGFVRNGRFKDALEMF 246
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ ++ D FT+VS+L A A L A + G WI YI +N+ + + ALIDMYC C
Sbjct: 247 REMQERDVKPDGFTMVSLLNACAYLGASEQGRWIHKYIVRNRFELNSIVITALIDMYCKC 306
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
E+ K W +MI+GLA +G ++A+D+F ++ R ++PD V+++GVL
Sbjct: 307 GCFEEGLKVFECAPTKQLSCWNSMILGLANNGCEERAMDLFLELERTGLEPDSVSFIGVL 366
Query: 173 SACTHN 178
+AC H+
Sbjct: 367 TACAHS 372
>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
[Vitis vinifera]
gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
Length = 601
Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 114/182 (62%), Gaps = 8/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV +A+V Y G D A + F++MP R+ V W A+I GY++ NR++EAL +FQEM
Sbjct: 239 DVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMI 298
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
I ++ T+ S LTA A L +LD G W+ Y+D++K+ + G AL+DMY C V+
Sbjct: 299 IEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVD 358
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+A KD + WT MI GLA+ G+ +L++FSQM+R+ ++P+ V ++GVLSAC
Sbjct: 359 EALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACA 418
Query: 177 HN 178
H
Sbjct: 419 HG 420
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 98/180 (54%), Gaps = 9/180 (5%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D ++VS + + G VD +R+ F + ++D V WTA+I+G LR R EAL F EM+
Sbjct: 137 DAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMR 196
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKT-YIDKNKVKNDIFAGNALIDMYCICADV 123
+S + DE T+VS+L A A LR + G W+ Y++ +V D++ G+AL+DMY C
Sbjct: 197 SSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYC 256
Query: 124 EKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ A K + SW +I G +AL +F +M+ I+P++ L+AC
Sbjct: 257 DDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTAC 316
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 9/154 (5%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88
FD++ LW ++ + ++ + L + ++ ++ D T +L A + LR
Sbjct: 61 FDRLATPYIFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRNE 120
Query: 89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKFSWTTMIVGL 140
+ ++ +I K + D F N+L+ + C V E A+KD SWT +I G
Sbjct: 121 NPFQFY-AHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGC 179
Query: 141 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+G +AL+ F +M + ++ DEV V VL A
Sbjct: 180 LRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCA 213
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G VD A F+++P +D WTAMI+G +L LF +M S +
Sbjct: 345 TALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQ 404
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
+ T + +L+A A+ +D G E + I +++ ++ ++D+ +E+A K
Sbjct: 405 PNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIK 464
>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 1467
Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 117/183 (63%), Gaps = 8/183 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK+K+ ++ A+++ Y G + A++ FDQ+P +D + W++MI Y + + F ++L LF
Sbjct: 1102 MKDKNTVTLNAMITAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELF 1161
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++MQ + + D I S+L+A A+L ALDLG+WI Y+ +N +K D N+LIDM+ C
Sbjct: 1162 RQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKADTIMENSLIDMFAKC 1221
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
V++A +KD SW ++I+GLA +G D+ALD+F ML +P+EV ++GVL
Sbjct: 1222 GCVQEALQVFTDMEEKDTLSWNSIILGLANNGFEDEALDIFHSMLTEGPRPNEVTFLGVL 1281
Query: 173 SAC 175
AC
Sbjct: 1282 IAC 1284
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 113/187 (60%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+SW +++ + G+V+ AR FDQMP R+ V WT +IDGY R + EALTL
Sbjct: 540 MPVKNVVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLL 599
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M I E T+++++ A +NL + +GE + Y +K + +D GN+LID+Y
Sbjct: 600 RHMMAGGISPSEITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKI 659
Query: 121 ADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
V+ + +++ SWT++I G A+ G +AL++F++M RA IKP+ + ++ V
Sbjct: 660 GSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSV 719
Query: 172 LSACTHN 178
++AC+H
Sbjct: 720 INACSHG 726
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 101/212 (47%), Gaps = 39/212 (18%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ +++ Y G + AR F++M +D V W ++I GY + NR +E LTLF+ MQ
Sbjct: 974 DIFVSNSLIYLYAACGALACARSVFNEMLVKDVVSWNSLIGGYSQHNRLKEVLTLFKLMQ 1033
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ D+ T+V +++A +L + + + YI+ N ++ D++ GN LID YC ++
Sbjct: 1034 AEEVQADKVTMVKVISACTHLGDWSMADCMVRYIEHNHIEVDVYLGNTLIDYYCRIGQLQ 1093
Query: 125 KAQ---------------------------------------KDKFSWTTMIVGLAISGN 145
A+ KD SW++MI + + +
Sbjct: 1094 SAEKVFSQMKDKNTVTLNAMITAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASH 1153
Query: 146 GDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+L++F QM RA +KPD V VLSAC H
Sbjct: 1154 FSDSLELFRQMQRAKVKPDAVVIASVLSACAH 1185
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 8/161 (4%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A + F Q+ LW ++ G + + ++A+ +++ Q + D T +L A A
Sbjct: 893 AHKVFKQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAK 952
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTM 136
A GE + ++ K DIF N+LI +Y C + A+ KD SW ++
Sbjct: 953 TCAPKEGEQMHNHVIKLGFLLDIFVSNSLIYLYAACGALACARSVFNEMLVKDVVSWNSL 1012
Query: 137 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
I G + + L +F M ++ D+V V V+SACTH
Sbjct: 1013 IGGYSQHNRLKEVLTLFKLMQAEEVQADKVTMVKVISACTH 1053
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 28/176 (15%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFR-EALTLFQEM 63
D I +++ + G V A Q F M E+D + W ++I G L N F EAL +F M
Sbjct: 1207 DTIMENSLIDMFAKCGCVQEALQVFTDMEEKDTLSWNSIILG-LANNGFEDEALDIFHSM 1265
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
T +E T + +L A AN + ++ G +D + V
Sbjct: 1266 LTEGPRPNEVTFLGVLIACANRQLVEEG----------------------LDHFERMKSV 1303
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC-THN 178
+ + ++ L+ +G +KA+ S+M + PD V + +L AC TH
Sbjct: 1304 HNLEPQMKHYGCVVDILSRAGQLEKAVSFISEM---PLAPDPVVWRILLGACRTHG 1356
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 13/140 (9%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A + FDQ P W A + Y EAL LF+ + ++ D F +L A A
Sbjct: 437 ALKVFDQSP----APWRAFLKAYSHGPFPLEALHLFKHAR-QHLADDTFVFTFVLKACAG 491
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTM 136
L G + + + + + ALI++Y + + +A+K + SW M
Sbjct: 492 LGWHRAGAQLHALVVQKGFEFHAYVHTALINVYVMSRCLVEARKVFDEMPVKNVVSWNVM 551
Query: 137 IVGLAISGNGDKALDMFSQM 156
I G A G + A +F QM
Sbjct: 552 ITGFAGWGEVEYARLLFDQM 571
>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Vitis vinifera]
Length = 731
Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 113/185 (61%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ K V+SWTA+++ I +++ AR FD RD ++WTAM+ Y + N +A LF
Sbjct: 288 LTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLF 347
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M+TS + + TIVS+L+ A ALDLG+W+ +YIDK +V+ D AL+DMY C
Sbjct: 348 DQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKC 407
Query: 121 AD--------VEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
D +E +D W +I G A+ G G++ALD+F++M R +KP+++ ++G+L
Sbjct: 408 GDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLL 467
Query: 173 SACTH 177
AC+H
Sbjct: 468 HACSH 472
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 75/142 (52%), Gaps = 8/142 (5%)
Query: 40 WTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYID 99
W +I Y + N+ R AL ++ +++ + D F S+L A + LG+ I ++
Sbjct: 92 WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 151
Query: 100 KNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALD 151
K + D+F GNAL+ MY CA VE A ++D SW+TMI L+ + D AL+
Sbjct: 152 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALE 211
Query: 152 MFSQMLRASIKPDEVAYVGVLS 173
+ +M ++P EVA V +++
Sbjct: 212 LIREMNFMQVRPSEVAMVSMVN 233
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 89/214 (41%), Gaps = 41/214 (19%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++DV A++ Y V+ AR FD+M ERD V W+ MI R F AL L +E
Sbjct: 156 DRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIRE 215
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYI--DKNKVKNDIFAGNALIDMYCIC 120
M + E +VS++ A+ + +G+ + Y+ + N + AL+DMY C
Sbjct: 216 MNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKC 275
Query: 121 ADVEKA--------QKDKFSWTTMIVG-------------------------------LA 141
+ A QK SWT MI G A
Sbjct: 276 GHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYA 335
Query: 142 ISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ D+A ++F QM + ++P +V V +LS C
Sbjct: 336 QANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLC 369
>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
Length = 452
Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 80/185 (43%), Positives = 114/185 (61%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ +++++ TA++S Y G+V+ AR FDQM E+D V W+AMI GY ++ +EAL LF
Sbjct: 9 ISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLF 68
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EMQ I D+ TI+S+++A A L LD +WI Y+DKN + + NALIDMY C
Sbjct: 69 SEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKC 128
Query: 121 ADV-------EKAQ-KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ EK Q ++ SWT+MI AI G+ AL F QM +IKP+ V +VGVL
Sbjct: 129 GNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVL 188
Query: 173 SACTH 177
AC+H
Sbjct: 189 YACSH 193
Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
A++ Y G + AR F++M R+ + WT+MI+ + AL F +M+ NI
Sbjct: 119 NALIDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIK 178
Query: 70 GDEFTIVSILTARANLRALDLG 91
+ T V +L A ++ ++ G
Sbjct: 179 PNGVTFVGVLYACSHAGLVEEG 200
>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
Length = 601
Score = 151 bits (382), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 114/182 (62%), Gaps = 8/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV +A+V Y G D A + F++MP R+ V W A+I GY++ NR++EAL +FQEM
Sbjct: 239 DVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMI 298
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
I ++ T+ S LTA A L +LD G W+ Y+D++K+ + G AL+DMY C V+
Sbjct: 299 IEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVD 358
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+A KD + WT MI GLA+ G+ +L++FSQM+R+ ++P+ V ++GVLSAC
Sbjct: 359 EALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACA 418
Query: 177 HN 178
H
Sbjct: 419 HG 420
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 98/180 (54%), Gaps = 9/180 (5%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D ++VS + + G VD +R+ F + ++D V WTA+I+G LR R EAL F EM+
Sbjct: 137 DAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMR 196
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKT-YIDKNKVKNDIFAGNALIDMYCICADV 123
+S + DE TIVS+L A A LR + G W+ Y++ +V D++ G+AL+DMY C
Sbjct: 197 SSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYC 256
Query: 124 EKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ A K + SW +I G +AL +F +M+ I+P++ L+AC
Sbjct: 257 DDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTAC 316
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 73/154 (47%), Gaps = 9/154 (5%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88
FD++ LW +I G+ ++ + L + ++ ++ D T +L A + LR
Sbjct: 61 FDRLATPYIFLWNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRNE 120
Query: 89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKFSWTTMIVGL 140
+ ++ +I K + D F N+L+ + C V E A+KD SWT +I G
Sbjct: 121 NPFQFY-AHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGC 179
Query: 141 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+G +AL+ F +M + ++ DEV V VL A
Sbjct: 180 LRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCA 213
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G VD A F+++P +D WTAMI+G +L LF +M S +
Sbjct: 345 TALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQ 404
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
+ T + +L+A A+ +D G E + I +++ ++ ++D+ +E+A K
Sbjct: 405 PNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIK 464
>gi|347954492|gb|AEP33746.1| chloroplast biogenesis 19, partial [Barbarea verna]
Length = 494
Score = 151 bits (382), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++K+ ++W ++ Y+ GQV+ A + FD+MPERD + WTAMI+G+++ EAL F
Sbjct: 129 MEDKNSVTWNTMIDGYMRSGQVNNAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWF 188
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ S + D I++ L A +L AL G W+ Y+ KN+I N+LID+YC C
Sbjct: 189 REMQISGVKPDYVAIIAALAACTHLGALSFGLWVHRYVMNQDFKNNIRVSNSLIDLYCRC 248
Query: 121 ADVEKAQK--DKF------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VE A++ DK SW ++IVG A +GN ++L F +M KPD V + G L
Sbjct: 249 GCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGAL 308
Query: 173 SACTH 177
+AC+H
Sbjct: 309 TACSH 313
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 74/166 (44%), Gaps = 27/166 (16%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y G V+ AR+ FD+M +R V W ++I G+ E+L F++MQ
Sbjct: 240 SLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKP 299
Query: 71 DEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
D T LTA +++ ++ G + +T +++ I L+D+Y
Sbjct: 300 DAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLY------------ 347
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ +G + AL++ M +KP+EV +L+AC
Sbjct: 348 -----------SRAGRLEDALNVVQSM---PMKPNEVVIGSLLAAC 379
>gi|356577724|ref|XP_003556973.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Glycine max]
Length = 549
Score = 151 bits (382), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 81/186 (43%), Positives = 113/186 (60%), Gaps = 12/186 (6%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFQ 61
K W A+++ Y G + AR F+ MPE RD V WT +I GY + + EA+TLF+
Sbjct: 191 KHAPLWNAMLAGYAKVGNMSNARNLFECMPEKDRDVVSWTTLISGYTQTHSPNEAITLFR 250
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK--NKVKNDIFAGNALIDMYCI 119
M N+ DE I+++L+A A+L AL LGEWI YI+K NK++ + N+LIDMY
Sbjct: 251 IMLLQNVQPDEIAILAVLSACADLGALQLGEWIHNYIEKHNNKLRKTVPLCNSLIDMYAK 310
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
D+ KA K +WTT+I GLA+ G G +ALD+FS M +A +KP+EV + V
Sbjct: 311 SGDISKARQLFQNMKHKTIITWTTVISGLALHGFGKEALDVFSCMEKARVKPNEVTLIAV 370
Query: 172 LSACTH 177
LSAC+H
Sbjct: 371 LSACSH 376
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
K V +++ Y G + ARQ F M + + WT +I G +EAL +F M
Sbjct: 296 KTVPLCNSLIDMYAKSGDISKARQLFQNMKHKTIITWTTVISGLALHGFGKEALDVFSCM 355
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYI-DKNKVKNDIFAGNALIDM 116
+ + + +E T++++L+A +++ ++LG I T + K ++ I +ID+
Sbjct: 356 EKARVKPNEVTLIAVLSACSHVGLVELGRNIFTSMRSKYGIEPKIEHYGCMIDL 409
>gi|357141789|ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Brachypodium distachyon]
Length = 555
Score = 151 bits (382), Expect = 9e-35, Method: Composition-based stats.
Identities = 76/188 (40%), Positives = 119/188 (63%), Gaps = 11/188 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++SW +V Y G+++ AR+ FD+MPE+D V WT MI GY + + E L LF
Sbjct: 236 MPVRNLVSWNTMVRGYAVNGEMNDARELFDRMPEKDVVSWTCMISGYAQARCYTETLELF 295
Query: 61 QEMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK--VKNDIFAGNALIDMY 117
+ MQ+ SN++ +E T+VS+L+A A+L AL+ G W +IDK+K + ++ G ALIDMY
Sbjct: 296 RAMQSESNVLPNEVTMVSVLSACAHLTALEEGRWAHAFIDKHKMVLDSEFNLGAALIDMY 355
Query: 118 CICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
C + A QK+ +W +I GLA++G+ ++D+F QM R+ KP+ + +V
Sbjct: 356 SKCGRTDLAVKIFHSLDQKNVSAWNALITGLAVNGDVRSSIDVFEQMRRSGEKPNGITFV 415
Query: 170 GVLSACTH 177
GVL+AC H
Sbjct: 416 GVLTACAH 423
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 55/182 (30%), Positives = 91/182 (50%), Gaps = 15/182 (8%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+++W ++ Y+ G++ AR+ F+QMP+R+ V W+AM+ Y A +F EM
Sbjct: 145 DLVTWNTMLGGYVKCGEIGEARRVFEQMPQRNGVSWSAMVGAYAGAGELDVAREMFDEMP 204
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
I + + S++T A L L + D+ V+N + + N ++ Y + ++
Sbjct: 205 A--IGRNVVSWNSMITGFARHGLLPLA---RKMFDEMPVRN-LVSWNTMVRGYAVNGEMN 258
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSAC 175
A +KD SWT MI G A + + L++F M S + P+EV V VLSAC
Sbjct: 259 DARELFDRMPEKDVVSWTCMISGYAQARCYTETLELFRAMQSESNVLPNEVTMVSVLSAC 318
Query: 176 TH 177
H
Sbjct: 319 AH 320
Score = 40.8 bits (94), Expect = 0.23, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G+ D+A + F + +++ W A+I G R ++ +F++M+ S
Sbjct: 350 ALIDMYSKCGRTDLAVKIFHSLDQKNVSAWNALITGLAVNGDVRSSIDVFEQMRRSGEKP 409
Query: 71 DEFTIVSILTARANLRALDLG 91
+ T V +LTA A+ +D G
Sbjct: 410 NGITFVGVLTACAHGGLVDEG 430
>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 151 bits (382), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 109/186 (58%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K ++S TA+++ Y G++D AR FD M ERD V W MIDGY + EAL LF
Sbjct: 185 MPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLF 244
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M + +E T++S+L+A L AL+ G W+ +YI+ N ++ ++ G AL+DMY C
Sbjct: 245 RRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKC 304
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E A+ KD +W +MIVG A+ G +AL +F M R + P + ++G+L
Sbjct: 305 GSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGIL 364
Query: 173 SACTHN 178
SAC H+
Sbjct: 365 SACGHS 370
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 81/199 (40%), Gaps = 43/199 (21%)
Query: 16 YINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTI 75
Y + G++D + F + WTA+I G+ +AL + +M T + + FT
Sbjct: 72 YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 131
Query: 76 VSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-------- 127
SIL L ++ G+ + + K +D++ L+D+Y DV AQ
Sbjct: 132 SSIL----KLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPE 187
Query: 128 -------------------------------KDKFSWTTMIVGLAISGNGDKALDMFSQM 156
+D W MI G +G ++AL +F +M
Sbjct: 188 KSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRM 247
Query: 157 LRASIKPDEVAYVGVLSAC 175
L+A KP+EV + VLSAC
Sbjct: 248 LKAKAKPNEVTVLSVLSAC 266
>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
Length = 648
Score = 151 bits (382), Expect = 9e-35, Method: Composition-based stats.
Identities = 76/178 (42%), Positives = 110/178 (61%), Gaps = 9/178 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMP-ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI 68
T +++ Y QV +AR FD M +++ V W+AM+ GY RV EAL LF+EMQ +
Sbjct: 214 TGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGV 273
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA-- 126
DE T+VS+++A A ALDLG+W+ YID+ + D+ ALIDMY C +E+A
Sbjct: 274 EPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARG 333
Query: 127 ------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+KD +W+ MIVG AI G + AL +FS+ML ++P+ V ++GVLSAC H+
Sbjct: 334 VFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHS 391
Score = 50.1 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 7/136 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ Y G ++ AR FD M E+D W+AMI G+ +AL LF M +
Sbjct: 316 TALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVR 375
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
+ T + +L+A A+ ++ G + + +K + ++D+ C ++ A
Sbjct: 376 PNNVTFIGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMENYGCMVDLLCRSGLLDDAY-- 433
Query: 130 KFSWTTMIVGLAISGN 145
+ ++G+ +S N
Sbjct: 434 -----SFVIGMPVSPN 444
>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
gi|223948835|gb|ACN28501.1| unknown [Zea mays]
Length = 599
Score = 151 bits (382), Expect = 9e-35, Method: Composition-based stats.
Identities = 76/178 (42%), Positives = 110/178 (61%), Gaps = 9/178 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMP-ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI 68
T +++ Y QV +AR FD M +++ V W+AM+ GY RV EAL LF+EMQ +
Sbjct: 165 TGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGV 224
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA-- 126
DE T+VS+++A A ALDLG+W+ YID+ + D+ ALIDMY C +E+A
Sbjct: 225 EPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARG 284
Query: 127 ------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+KD +W+ MIVG AI G + AL +FS+ML ++P+ V ++GVLSAC H+
Sbjct: 285 VFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHS 342
Score = 50.1 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 7/136 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ Y G ++ AR FD M E+D W+AMI G+ +AL LF M +
Sbjct: 267 TALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVR 326
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
+ T + +L+A A+ ++ G + + +K + ++D+ C ++ A
Sbjct: 327 PNNVTFIGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMENYGCMVDLLCRSGLLDDAY-- 384
Query: 130 KFSWTTMIVGLAISGN 145
+ ++G+ +S N
Sbjct: 385 -----SFVIGMPVSPN 395
>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
Length = 562
Score = 151 bits (382), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 109/186 (58%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K ++S TA+++ Y G++D AR FD M ERD V W MIDGY + EAL LF
Sbjct: 119 MPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLF 178
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M + +E T++S+L+A L AL+ G W+ +YI+ N ++ ++ G AL+DMY C
Sbjct: 179 RRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKC 238
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E A+ KD +W +MIVG A+ G +AL +F M R + P + ++G+L
Sbjct: 239 GSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGIL 298
Query: 173 SACTHN 178
SAC H+
Sbjct: 299 SACGHS 304
>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
[Vitis vinifera]
gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 151 bits (382), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 114/185 (61%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K++++ TA+V+ Y GQ++ AR F+QM ++D V W+AMI GY + +EAL LF
Sbjct: 284 MTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLF 343
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EMQ+ I D+ T++S++TA A+L ALD +WI ++DKN + NALI+MY C
Sbjct: 344 NEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKC 403
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E+A +K+ SWT MI A+ G+ AL F QM +I+P+ + +VGVL
Sbjct: 404 GSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVL 463
Query: 173 SACTH 177
AC+H
Sbjct: 464 YACSH 468
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 99/214 (46%), Gaps = 39/214 (18%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ D T +V Y G++ AR FD+M RD V W+ MIDGY + F +AL LF+E
Sbjct: 154 DSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEE 213
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M+ N+ DE + ++L+A L G+ I +I +N + D +AL+ MY C
Sbjct: 214 MKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGS 273
Query: 123 VEKA---------------------------------------QKDKFSWTTMIVGLAIS 143
++ A +KD W+ MI G A S
Sbjct: 274 MDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAES 333
Query: 144 GNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+ +AL++F++M IKPD+V + V++AC H
Sbjct: 334 DSPQEALNLFNEMQSLGIKPDQVTMLSVITACAH 367
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 14/180 (7%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
K VIS A+ S +D A F+ +P+ + L + R + L +++ M
Sbjct: 60 KLVISSCALSS------SLDYALSVFNLIPKPETHLCNRFLRELSRSEEPEKTLLVYERM 113
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+T + D F+ +L A + +++L G I K +D F L+ MY C +
Sbjct: 114 RTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRI 173
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+A +D +W+ MI G SG + AL +F +M +++PDE+ VLSAC
Sbjct: 174 AEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSAC 233
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G ++ AR+ FD+MP ++ + WT MI + AL F +M+ NI
Sbjct: 395 ALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEP 454
Query: 71 DEFTIVSILTARANLRALDLGEWI-KTYIDKNKVKNDIFAGNALIDMY 117
+ T V +L A ++ ++ G I + I+++ + ++D++
Sbjct: 455 NGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLF 502
>gi|357501421|ref|XP_003620999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124365545|gb|ABN09779.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355496014|gb|AES77217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 601
Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 115/186 (61%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ K+VISWT++V Y G VD AR FD MPE++ + W AMI GY + R +AL LF
Sbjct: 246 MRVKNVISWTSMVHGYSEDGDVDEARFLFDCMPEKNVLSWNAMIRGYCQNGRSHDALKLF 305
Query: 61 QEMQTS-NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
EM+ + ++ +E T+VS+L A A+L ALDLG W+ ++ +N++ + NAL+DMY
Sbjct: 306 CEMRGNVDVEMNEVTVVSVLPAVADLSALDLGGWVHGFVQRNQLDGSVHVCNALVDMYAK 365
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C ++ KA +KD SW +I G ++G +AL++F+ MLR +P+++ V
Sbjct: 366 CGEIGKAKLVFEEMTEKDTGSWNALINGYGVNGCAKEALEVFAMMLREGFEPNQITMTSV 425
Query: 172 LSACTH 177
LSAC H
Sbjct: 426 LSACNH 431
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 17/179 (9%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ T++V Y+ G V AR+ FD+M R V WTA+I GY R EA LF M
Sbjct: 157 DLYVGTSLVDMYVKFGDVGFARKVFDEMSVRSLVSWTAVIVGYARCGDMVEARKLFDGMV 216
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
++ F + ++ + +DL + DK +VKN + + +++ Y DV+
Sbjct: 217 DRDVAA--FNV--MIDGYVKMGRMDLA---RDLFDKMRVKN-VISWTSMVHGYSEDGDVD 268
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGVLSA 174
+A +K+ SW MI G +G AL +F +M ++ +EV V VL A
Sbjct: 269 EARFLFDCMPEKNVLSWNAMIRGYCQNGRSHDALKLFCEMRGNVDVEMNEVTVVSVLPA 327
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 61/147 (41%), Gaps = 11/147 (7%)
Query: 22 VDIARQCFDQMPER--DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM-GDEFTIVSI 78
V AR F+ P D L +I+ + + +F TL+ + +T I
Sbjct: 70 VQHARLFFNHTPPHKCDEFLCNTIINAHFSLRQFNHGFTLYNQFSKDCFFRPSSYTFTLI 129
Query: 79 LTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DK 130
L + A G I + KN D++ G +L+DMY DV A+K
Sbjct: 130 LKGCSVSDAKRQGFQIHGVVLKNWFCLDLYVGTSLVDMYVKFGDVGFARKVFDEMSVRSL 189
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQML 157
SWT +IVG A G+ +A +F M+
Sbjct: 190 VSWTAVIVGYARCGDMVEARKLFDGMV 216
>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Vitis vinifera]
Length = 615
Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 116/181 (64%), Gaps = 8/181 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
D++ TA+VS G V AR+ FD+M +D + W AMI GY++ + REAL+LF M
Sbjct: 175 PDLVCQTAMVSACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLM 234
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
Q + +E ++VS+L+A ++L ALD G W YI++NK++ + G ALIDMY C ++
Sbjct: 235 QREGVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNM 294
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
KA +K+ ++W++ I GLA++G G+K L++FS M + S++P+E+ +V VL C
Sbjct: 295 NKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGC 354
Query: 176 T 176
+
Sbjct: 355 S 355
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 126 AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+ KD +W MI G G +AL +F+ M R +K +EV+ V VLSAC+H
Sbjct: 204 SHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSACSH 255
>gi|147818273|emb|CAN64718.1| hypothetical protein VITISV_026719 [Vitis vinifera]
Length = 499
Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 116/187 (62%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D+ SWT +++ Y N V+ AR+ FD+MPER V ++AM+ Y+R NRFREAL LF
Sbjct: 148 MGYRDIASWTTLLACYANSCSVEAARKVFDEMPERSVVSYSAMLAAYVRGNRFREALELF 207
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKN-DIFAGNALIDMYCI 119
+E+ + I + ++S+L A ANL ALD+G W+ +++ +K D ALIDM+
Sbjct: 208 RELFSVKIEPSDSCVMSVLCACANLGALDVGRWVYSFVCHSKGDYVDSRIATALIDMFFK 267
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C +E A +K WT M+ GLA+ G G++ ++ F +M+ + IKPDEV +V +
Sbjct: 268 CGSIEHALLVFEGAKEKHVGEWTAMLSGLAMHGLGEQLIEAFEKMVDSGIKPDEVTFVAL 327
Query: 172 LSACTHN 178
LS C+H+
Sbjct: 328 LSGCSHS 334
>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 112/181 (61%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV++W ++ G++D +R+ FD+M R+ V W +MI GY+R RF EA+ LF MQ
Sbjct: 162 DVVTWNTMIIGLAKCGEIDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQ 221
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
I EFT+VS+L A A L AL GEWI YI KN + A+IDMY C ++
Sbjct: 222 EEGIKPSEFTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSID 281
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
KA +K W ++I+GLA+SG G++A+ +FS++ +++KPD V+++GVL+AC
Sbjct: 282 KALQVFKSAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACN 341
Query: 177 H 177
H
Sbjct: 342 H 342
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 91/214 (42%), Gaps = 42/214 (19%)
Query: 4 KDVISWTAIVSRYINR-GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
KD I+ + +++ + G ++ A F Q+ + +W +I G+ + + A++LF +
Sbjct: 26 KDTIAASRVLAFCTSPAGDINYAYLVFTQIRNPNLFVWNTIIRGFSQSSTPHNAISLFID 85
Query: 63 MQ--TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M + T S+ A A L G + + K ++ND F N +++MY C
Sbjct: 86 MMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGRVIKLGLENDQFIQNTILNMYVNC 145
Query: 121 ADVEKAQK--------DKFSWTTMIVGLAISGNGDK------------------------ 148
+ +AQ+ D +W TMI+GLA G DK
Sbjct: 146 GFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGEIDKSRRLFDKMLLRNTVSWNSMISGYV 205
Query: 149 -------ALDMFSQMLRASIKPDEVAYVGVLSAC 175
A+++FS+M IKP E V +L+AC
Sbjct: 206 RKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNAC 239
>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
Length = 850
Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 110/188 (58%), Gaps = 10/188 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ +DV+SWT I+ Y + IAR FD MP +D W +I GY + R +EAL +F
Sbjct: 404 MEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIF 463
Query: 61 QEMQ--TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC 118
+E+Q S D+ T++S L+A A L A+D+GEWI YI K +++ + +LIDMY
Sbjct: 464 RELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYS 523
Query: 119 ICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
DVEKA KD F W+ MI GLA+ G G+ A+++F M +KP+ V +
Sbjct: 524 KSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTN 583
Query: 171 VLSACTHN 178
+L AC+H+
Sbjct: 584 LLCACSHS 591
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 101/214 (47%), Gaps = 43/214 (20%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMP--ERDYVLWTAMIDGYLRVNRFREALTLFQE 62
DV +++ Y + G +D+A F+ + +D V W +M+ G+++ +AL LF+
Sbjct: 274 DVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFER 333
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M+ + + T+VS+++A A L LG + YID+N++ ++ NA IDM+ C +
Sbjct: 334 MRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGE 393
Query: 123 VEKA--------QKDKFSWTTMIVGLAI-------------------------------S 143
VE A ++D SWTT+I G A S
Sbjct: 394 VEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQS 453
Query: 144 GNGDKALDMFS--QMLRASIKPDEVAYVGVLSAC 175
G +AL +F Q+ ++ +PD+V + LSAC
Sbjct: 454 GRPKEALAIFRELQLTKSGARPDQVTLLSTLSAC 487
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 11/165 (6%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG-DEFTIVSILT 80
+D AR+ FDQ+P+ + W +I + +++ +F M + G ++FT ++
Sbjct: 189 LDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIK 248
Query: 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD----------VEKAQKDK 130
A A R +G+ + K +D+F N+LI Y C +E KD
Sbjct: 249 AVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDI 308
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
SW +M+ G G DKALD+F +M + P+ V V V+SAC
Sbjct: 309 VSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSAC 353
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 21/175 (12%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T+++ Y G V+ A + F + +D +W+AMI G R A+ LF +MQ + +
Sbjct: 516 TSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVK 575
Query: 70 GDEFTIVSILTARANLRALDLG-----EWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ T ++L A ++ +D G E + Y K K+ + ++D+ +E
Sbjct: 576 PNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHY----SCMVDVLGRAGHLE 631
Query: 125 KAQK---------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKP-DEVAYV 169
+A K W ++ I GN + A S++L I+P + AYV
Sbjct: 632 EALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLE--IEPGNHGAYV 684
>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 622
Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 116/186 (62%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SWT++V+ Y G V+ AR+ FD+MP R+ W+ MI+GY + N F +A+ LF
Sbjct: 178 MGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLF 237
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M+ ++ +E +VS++++ A+L AL+ GE Y+ K+ + ++ G AL+DM+ C
Sbjct: 238 EFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRC 297
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
D+EKA + D SW+++I GLA+ G+ KA+ FSQM+ P +V + VL
Sbjct: 298 GDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVL 357
Query: 173 SACTHN 178
SAC+H
Sbjct: 358 SACSHG 363
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 76/188 (40%), Gaps = 39/188 (20%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88
F Q+ + ++ +I + +A + +M S I D T ++ A + + +
Sbjct: 74 FSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECV 133
Query: 89 DLGEWIKTYIDKNKVKNDIFAGNALIDM-------------------------------Y 117
+GE + I + +ND++ N+L+ M Y
Sbjct: 134 LVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGY 193
Query: 118 CICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
C C VE A ++ F+W+ MI G A + +KA+D+F M R + +E V
Sbjct: 194 CKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMV 253
Query: 170 GVLSACTH 177
V+S+C H
Sbjct: 254 SVISSCAH 261
>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Cucumis sativus]
Length = 614
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 114/184 (61%), Gaps = 8/184 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
++ D++ T +VS G + AR FD MP+RD+V W AMI GY + + REAL LF
Sbjct: 171 VQKPDLVCQTTMVSACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLF 230
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ MQ + +E +++S++TA +L ALD G+W YI+KNK++ + G AL+DMY C
Sbjct: 231 KLMQMDGVKVNEVSMISVVTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKC 290
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+V++A +K+ ++W+T I GLA++G G K L++FS M I P+E+ ++ VL
Sbjct: 291 GNVDRALKVFWEMNEKNVYTWSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVL 350
Query: 173 SACT 176
C+
Sbjct: 351 KGCS 354
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 104 KNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQ 155
K D+ ++ C D+ A Q+D SW MI G A G +AL++F
Sbjct: 173 KPDLVCQTTMVSACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKL 232
Query: 156 MLRASIKPDEVAYVGVLSACTH 177
M +K +EV+ + V++ACTH
Sbjct: 233 MQMDGVKVNEVSMISVVTACTH 254
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 25/166 (15%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G VD A + F +M E++ W+ I G ++ L LF M+ I
Sbjct: 281 TALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIGGLAMNGYGQKCLELFSFMKHEGIA 340
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
+E T +S+L + + +D G +++ D K + I + + +
Sbjct: 341 PNEITFISVLKGCSVVGFVDEG---RSHFDSMKRDHGI-----------------EPRLE 380
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ + G A G ++AL+ + M +KP A+ +L+AC
Sbjct: 381 HYGCMVDLYGRA--GRLEEALNFINTM---PLKPHAGAWGALLNAC 421
>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
Length = 575
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 109/186 (58%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K ++S TA+++ Y G++D AR FD M ERD V W MIDGY + EAL LF
Sbjct: 132 MPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLF 191
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M + +E T++S+L+A L AL+ G W+ +YI+ N ++ ++ G AL+DMY C
Sbjct: 192 RRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKC 251
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E A+ KD +W +MIVG A+ G +AL +F M R + P + ++G+L
Sbjct: 252 GSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGIL 311
Query: 173 SACTHN 178
SAC H+
Sbjct: 312 SACGHS 317
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 81/199 (40%), Gaps = 43/199 (21%)
Query: 16 YINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTI 75
Y + G++D + F + WTA+I G+ +AL + +M T + + FT
Sbjct: 19 YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 78
Query: 76 VSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-------- 127
SIL L ++ G+ + + K +D++ L+D+Y DV AQ
Sbjct: 79 SSIL----KLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPE 134
Query: 128 -------------------------------KDKFSWTTMIVGLAISGNGDKALDMFSQM 156
+D W MI G +G ++AL +F +M
Sbjct: 135 KSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRM 194
Query: 157 LRASIKPDEVAYVGVLSAC 175
L+A KP+EV + VLSAC
Sbjct: 195 LKAKAKPNEVTVLSVLSAC 213
>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
Length = 575
Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 70/185 (37%), Positives = 119/185 (64%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ +D++SW ++ Y G+VD+AR+ F+ M +RD W++M+ Y + R ++AL L+
Sbjct: 132 MRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELW 191
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EM+ + + D T+VS+L+A +++ AL +G + +++ N V+ D+ G ALIDMY C
Sbjct: 192 REMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKC 251
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
D+E + KD +W++MI+GLA G G AL +FS+ML ++P+EV ++GVL
Sbjct: 252 GDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVL 311
Query: 173 SACTH 177
+CTH
Sbjct: 312 ISCTH 316
Score = 45.4 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 25/171 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV TA++ Y G ++ + + F MP +D + W++MI G +AL+LF M
Sbjct: 237 DVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRML 296
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ + +E T + +L + +L + G K Y V + +
Sbjct: 297 SEGLQPNEVTFIGVLISCTHLGLVSDG---KKYFSSMSVVHGV---------------TP 338
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
K Q + M+ L SG+ ++A + M +PD V + +L AC
Sbjct: 339 KVQH----YGCMVDLLGRSGHIEEAKQLIRDM---PFEPDAVIWRALLGAC 382
>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
Length = 541
Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 72/180 (40%), Positives = 110/180 (61%), Gaps = 12/180 (6%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ---TS 66
T+++S Y + G VD+AR F MPER+ + W+ MI+GY+R +++EAL LF+EMQ +
Sbjct: 103 TSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVN 162
Query: 67 NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126
++ +EFT+ +L A L AL+ G+W YIDK + D+ G ALIDMY C VEKA
Sbjct: 163 DVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKA 222
Query: 127 ---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
KD +W+ MI GLA+ G ++ + +FS+M+ ++P+ V ++ V AC H
Sbjct: 223 TWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVH 282
>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Glycine max]
Length = 616
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 117/180 (65%), Gaps = 8/180 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+++ TA+++ G +D AR+ FD+MPERD+V W AMI GY + R REAL +F MQ
Sbjct: 177 DLVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQ 236
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ +E ++V +L+A +L+ LD G W+ Y+++ KV+ + G AL+DMY C +V+
Sbjct: 237 MEGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVD 296
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+A +++ ++W++ I GLA++G G+++LD+F+ M R ++P+ + ++ VL C+
Sbjct: 297 RAMQVFWGMKERNVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITFISVLKGCS 356
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 103 VKNDIFAGNALIDMYCICADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFS 154
V+ D+ A+++ C D+ E ++D +W MI G A G +ALD+F
Sbjct: 174 VEPDLVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFH 233
Query: 155 QMLRASIKPDEVAYVGVLSACTH 177
M +K +EV+ V VLSACTH
Sbjct: 234 LMQMEGVKLNEVSMVLVLSACTH 256
>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
Length = 693
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 121/186 (65%), Gaps = 10/186 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
++N++++ TA++ Y G++ AR+ FD M RD V W+AMI GY + ++ REAL LF
Sbjct: 252 VRNRNLM--TALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALF 309
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EMQ + + ++ T+VS+L+A A L AL+ G+W+ +YI + ++ I G AL+D Y C
Sbjct: 310 SEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKC 369
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ A K+ ++WT +I G+A +G G +AL++FS M +ASI+P +V ++GVL
Sbjct: 370 GCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVL 429
Query: 173 SACTHN 178
AC+H+
Sbjct: 430 MACSHS 435
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 94/174 (54%), Gaps = 8/174 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
++++ Y + V A+ FD + E V+W A+I Y++ + E + +F+ M +
Sbjct: 158 SSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVA 217
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-- 127
DE T+VS++TA + LG+W+ Y+D+ + + ALIDMY C ++ KA+
Sbjct: 218 FDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRL 277
Query: 128 ------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+D +W+ MI G + +AL +FS+M A ++P++V V VLSAC
Sbjct: 278 FDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSAC 331
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 9/152 (5%)
Query: 33 PERDYVLWTAMIDGYLRVNRFREALTLFQEM-QTSNIMGDEFTIVSILTARANLRALDLG 91
P + ++ L +AL LF EM +++ D+ T+ L + + + LD+G
Sbjct: 79 PPLSTPCYNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVG 138
Query: 92 EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAIS 143
I+ Y K + D F ++LI MY C DV AQ W +I +
Sbjct: 139 RGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKN 198
Query: 144 GNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
GN + ++MF ML + DE+ V V++AC
Sbjct: 199 GNWMEVVEMFKGMLEVGVAFDEITLVSVVTAC 230
>gi|347954498|gb|AEP33749.1| chloroplast biogenesis 19, partial [Crucihimalaya wallichii]
Length = 491
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 110/185 (59%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++ + ++W ++ Y+ GQVD A + FD+MPERD + WTAMI+G+++ EAL F
Sbjct: 126 MEDINSVTWNTMIDGYMRSGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALVWF 185
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ S + D I++ L A NL AL G W+ Y+ KN++ N+LID+YC C
Sbjct: 186 REMQISGVRPDYVAIIAALNACTNLGALSFGLWVHRYVMNQDFKNNVRVSNSLIDLYCRC 245
Query: 121 ADVEKAQK--DKF------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VE A++ DK SW ++IVG A +GN ++L F +M KPD V + G L
Sbjct: 246 GCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGAL 305
Query: 173 SACTH 177
+AC+H
Sbjct: 306 TACSH 310
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 28/169 (16%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y G V+ AR+ FD+M +R V W ++I G+ E+L F++MQ
Sbjct: 237 SLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKP 296
Query: 71 DEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
D T LTA +++ ++ G + +T + I L+D+Y
Sbjct: 297 DAVTFTGALTACSHVGLVEEGLRYFQTMKRDYGISPRIEHYGCLVDLY------------ 344
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC-TH 177
+ +G + AL + M +KP+EV +L+AC TH
Sbjct: 345 -----------SRAGRLEDALKVIESM---PMKPNEVVIGSLLAACRTH 379
>gi|347954490|gb|AEP33745.1| chloroplast biogenesis 19, partial [Arabis hirsuta]
Length = 435
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 109/185 (58%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ K+ ++W ++ Y+ GQVD A + FD+MPERD + WTAMI+G+++ EAL F
Sbjct: 78 MEEKNSVTWNTMIDGYMRNGQVDDAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWF 137
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ S + D I++ L A NL AL G WI Y+ KN++ N+LID+YC C
Sbjct: 138 REMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVVSQDFKNNVRVSNSLIDLYCRC 197
Query: 121 ADVEKAQK--DKF------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VE A++ DK SW ++IVG A +G+ ++L F +M KP+ V + G L
Sbjct: 198 GCVEFARQVFDKMEKRTVVSWNSVIVGFAANGHAHESLVYFRKMQEEGFKPNAVTFTGAL 257
Query: 173 SACTH 177
+AC H
Sbjct: 258 AACNH 262
>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 586
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 112/183 (61%), Gaps = 9/183 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD +SW I++ Y G++++A F+Q+P RD V W ++I GY + + LF M
Sbjct: 228 KDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRM 287
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
N+ D+ TIV++++A A + ALD G WI K K + F+G+ALIDMYC C +
Sbjct: 288 FAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSI 347
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E+A +KD +WTTMI G A G G+KAL++FS M +A KP++V +V VL+AC
Sbjct: 348 ERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVM-QAETKPNDVTFVSVLAAC 406
Query: 176 THN 178
+H+
Sbjct: 407 SHS 409
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 98/203 (48%), Gaps = 39/203 (19%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ RY++ G + ARQ FD+M +R+ V + MI G+ +V L LF +M++ +
Sbjct: 103 SLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEP 162
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA---- 126
D+FT++ +L L LG+ + I+K+ +++ NAL+DMY C +++ A
Sbjct: 163 DDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVF 222
Query: 127 ----QKDKFSWTTMIVGLAISGNGDKALDMFSQ--------------------------- 155
+KD SW T+I G A G + A D+F+Q
Sbjct: 223 DGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKC 282
Query: 156 ----MLRASIKPDEVAYVGVLSA 174
M ++KPD+V V ++SA
Sbjct: 283 LFTRMFAENVKPDKVTIVNLISA 305
Score = 36.6 bits (83), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 24/147 (16%)
Query: 33 PERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA--------RAN 84
P + ++ MI G+ N +A T+++ M + D T + +L + +
Sbjct: 28 PYPNLYIFNTMILGFPFSNE--KAFTIYRSMLQNGTYPDRQTFLYLLQTTKFVAEVKQIH 85
Query: 85 LRALDLG-----EWIKTYIDKNKVKNDIF-AGNALIDMYCICADVEKAQKDKFSWTTMIV 138
AL G E+++ + K V N F L D E + ++ S+ TMI+
Sbjct: 86 CHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFD--------EMSDRNVVSYNTMIL 137
Query: 139 GLAISGNGDKALDMFSQMLRASIKPDE 165
G A GN L++F M ++PD+
Sbjct: 138 GFAKVGNILGILELFHDMRSHGLEPDD 164
>gi|347954500|gb|AEP33750.1| chloroplast biogenesis 19, partial [Lepidium sativum]
Length = 494
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 108/185 (58%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++K+ ++W ++ Y+ GQVD A + FD+MPERD + WTAMI G+++ EAL F
Sbjct: 132 MEDKNSVTWNTMIDGYMRNGQVDNAVKVFDEMPERDLISWTAMITGFVKKGFHEEALAWF 191
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ S + D I++ L A NL AL G W Y+ +N++ N+LID+YC C
Sbjct: 192 REMQISGVNPDYVAIIAALAACTNLGALSFGLWAHRYVVSQDFRNNVRVSNSLIDLYCRC 251
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VE A ++ SW ++IVG A +GN +++L F +M KPD V + G L
Sbjct: 252 GCVEFARQVFDTMEKRTVVSWNSVIVGFAANGNANESLVYFRKMQEEGFKPDAVTFTGAL 311
Query: 173 SACTH 177
+AC+H
Sbjct: 312 TACSH 316
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y G V+ ARQ FD M +R V W ++I G+ E+L F++MQ
Sbjct: 243 SLIDLYCRCGCVEFARQVFDTMEKRTVVSWNSVIVGFAANGNANESLVYFRKMQEEGFKP 302
Query: 71 DEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
D T LTA +++ ++ G ++ + ++ I L+D+Y +E A K
Sbjct: 303 DAVTFTGALTACSHVGLVEEGFQYFQMMKTDYRISPRIEHFGCLVDLYSRAGRLEDAIK 361
>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 112/184 (60%), Gaps = 8/184 (4%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
++ +V+ W ++ + G + A+ FD+MP R V W MI GY + F EA+ LFQ
Sbjct: 200 QDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQ 259
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
EMQ+SNI + T+VS+L A A + AL+LG+WI Y KNKV+ D G+AL+DMY C
Sbjct: 260 EMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCG 319
Query: 122 DVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
++KA +++ +W+ +I A+ G + A+ F M +A + P++VAY+G+LS
Sbjct: 320 SIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILS 379
Query: 174 ACTH 177
AC+H
Sbjct: 380 ACSH 383
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 86/229 (37%), Gaps = 64/229 (27%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFR---EALTLFQ 61
+VI + A SR +D AR F QMPE + W ++ N EAL LF
Sbjct: 56 EVIKFCAFSSR-----DIDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFS 110
Query: 62 EMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M + + FT S+L A A L G+ I I K D F + L+ MY +C
Sbjct: 111 AMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMC 170
Query: 121 ADVE----------------------------------------------KAQKDKF--- 131
A +E K+ K+ F
Sbjct: 171 AVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEM 230
Query: 132 ------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
SW MI G A +G+ +A+++F +M ++I P+ V V VL A
Sbjct: 231 PPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPA 279
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 80/177 (45%), Gaps = 28/177 (15%)
Query: 2 KNK---DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALT 58
KNK D + +A+V Y G +D A Q F+ +P+R+ + W+A+I + R +A+
Sbjct: 298 KNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAII 357
Query: 59 LFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC 118
F M + + ++ + IL+A ++ ++ G +++ K + I+ Y
Sbjct: 358 HFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVK------VVGLQPRIEHYG 411
Query: 119 ICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
D+ L +G+ ++A ++ M I+PD+V + +L AC
Sbjct: 412 CMVDL----------------LGRAGHLEEAEELIRNM---PIEPDDVIWKALLGAC 449
>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 112/183 (61%), Gaps = 9/183 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD +SW I++ Y G++++A F+Q+P RD V W ++I GY + + LF M
Sbjct: 293 KDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRM 352
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
N+ D+ TIV++++A A + ALD G WI K K + F+G+ALIDMYC C +
Sbjct: 353 FAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSI 412
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E+A +KD +WTTMI G A G G+KAL++FS M +A KP++V +V VL+AC
Sbjct: 413 ERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVM-QAETKPNDVTFVSVLAAC 471
Query: 176 THN 178
+H+
Sbjct: 472 SHS 474
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 98/203 (48%), Gaps = 39/203 (19%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ RY++ G + ARQ FD+M +R+ V + MI G+ +V L LF +M++ +
Sbjct: 168 SLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEP 227
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA---- 126
D+FT++ +L L LG+ + I+K+ +++ NAL+DMY C +++ A
Sbjct: 228 DDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVF 287
Query: 127 ----QKDKFSWTTMIVGLAISGNGDKALDMFSQ--------------------------- 155
+KD SW T+I G A G + A D+F+Q
Sbjct: 288 DGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKC 347
Query: 156 ----MLRASIKPDEVAYVGVLSA 174
M ++KPD+V V ++SA
Sbjct: 348 LFTRMFAENVKPDKVTIVNLISA 370
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 24/147 (16%)
Query: 33 PERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA--------RAN 84
P + ++ MI G+ N +A T+++ M + D T + +L + +
Sbjct: 93 PYPNLYIFNTMILGFPFSNE--KAFTIYRSMLQNGTYPDRQTFLYLLQTTKFVAEVKQIH 150
Query: 85 LRALDLG-----EWIKTYIDKNKVKNDIF-AGNALIDMYCICADVEKAQKDKFSWTTMIV 138
AL G E+++ + K V N F L D E + ++ S+ TMI+
Sbjct: 151 CHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFD--------EMSDRNVVSYNTMIL 202
Query: 139 GLAISGNGDKALDMFSQMLRASIKPDE 165
G A GN L++F M ++PD+
Sbjct: 203 GFAKVGNILGILELFHDMRSHGLEPDD 229
>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
Length = 686
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 110/186 (59%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M N+DV+ W ++ Y G V+ F++MPER+ W A+I GY F E L F
Sbjct: 322 MPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSF 381
Query: 61 QEMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+ M + S++ ++ T+V++L+A A L ALDLG+W+ Y + + +K +++ GNAL+DMY
Sbjct: 382 KRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAK 441
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C +E A KD SW T+I GLA+ G AL++F QM A KPD + ++G+
Sbjct: 442 CGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGI 501
Query: 172 LSACTH 177
L ACTH
Sbjct: 502 LCACTH 507
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 8/137 (5%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
ARQ FDQ+P+ + LW +M GY + +RE + LF +M+ +I + FT +L +
Sbjct: 152 ARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGK 211
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKFSWTTM 136
+ AL GE + ++ K + + F G LIDMY V E +++ +WT+M
Sbjct: 212 INALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSM 271
Query: 137 IVGLAISGNGDKALDMF 153
I G +S + A +F
Sbjct: 272 INGYILSADLVSARRLF 288
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 82/179 (45%), Gaps = 36/179 (20%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V++WT++++ YI + AR+ FD PERD VLW M+ GY+ EA LF
Sbjct: 260 MFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLF 319
Query: 61 QEMQTSNIMGDEF--TIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC 118
EM ++M F T++ N+ AL+ L +
Sbjct: 320 XEMPNRDVM---FWNTVLKGYATNGNVEALE----------------------GLFE--- 351
Query: 119 ICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSACT 176
E +++ FSW +I G A +G + L F +ML S + P++ V VLSAC
Sbjct: 352 -----EMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACA 405
>gi|255569325|ref|XP_002525630.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535066|gb|EEF36748.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 765
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 106/186 (56%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ KD+ SWT ++ Y R D AR FD MP +D W +I Y + + +EAL +F
Sbjct: 294 MEEKDIFSWTTMIDGYAKRRDFDAARSVFDAMPRQDISAWNVLISAYEQDGKPKEALAIF 353
Query: 61 QEMQTSNIM-GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
E+Q S DE T+VS L+A A L A+D+G WI YI K +K + +LIDMY
Sbjct: 354 HELQLSKTAKPDEVTLVSTLSACAQLGAIDIGGWIHVYIKKQDIKLNCHLTTSLIDMYSK 413
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C +VEKA ++D F W+ MI GLA+ G G A+D+F +M ++P+ V + +
Sbjct: 414 CGEVEKALDIFYSVDRRDVFVWSAMIAGLAMHGRGRAAIDLFFEMQETKVRPNAVTFTNL 473
Query: 172 LSACTH 177
L AC+H
Sbjct: 474 LCACSH 479
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 97/213 (45%), Gaps = 40/213 (18%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ +++ Y + G +D A F ++ E+D V W +MI G++ +AL LFQ M+
Sbjct: 166 DLFILNSLIHCYASCGDLDSAYSVFVKIEEKDVVSWNSMIKGFVLGGCPDKALELFQLMK 225
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
N+ ++ T+V +L+A A L+ G + YI++N + ++ NA++DMY +E
Sbjct: 226 AENVRPNDVTMVGVLSACAKKMDLEFGRRVCHYIERNGINVNLTVSNAMLDMYVKNGSLE 285
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI--------------- 161
A +KD FSWTTMI G A + D A +F M R I
Sbjct: 286 DARRLFDKMEEKDIFSWTTMIDGYAKRRDFDAARSVFDAMPRQDISAWNVLISAYEQDGK 345
Query: 162 -----------------KPDEVAYVGVLSACTH 177
KPDEV V LSAC
Sbjct: 346 PKEALAIFHELQLSKTAKPDEVTLVSTLSACAQ 378
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 83/163 (50%), Gaps = 9/163 (5%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-QTSNIMGDEFTIVSILT 80
+D AR+ F+++ + + W +I + +L +F M S ++FT ++
Sbjct: 81 LDYARKVFEEISQPNLYTWNTLIRAFASSPEPIHSLLIFIRMLYDSPDFPNKFTFPFVIK 140
Query: 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFS 132
A A + +L + I K + +D+F N+LI Y C D++ A +KD S
Sbjct: 141 AAAGVASLPFSQAIHGMAIKASLGSDLFILNSLIHCYASCGDLDSAYSVFVKIEEKDVVS 200
Query: 133 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
W +MI G + G DKAL++F M +++P++V VGVLSAC
Sbjct: 201 WNSMIKGFVLGGCPDKALELFQLMKAENVRPNDVTMVGVLSAC 243
>gi|147834049|emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
Length = 751
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 110/187 (58%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V+SWT ++ Y + G +D AR FD MPE++ W AMI GY + + EAL LF
Sbjct: 385 MPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYXQNKQPYEALKLF 444
Query: 61 QEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
EMQ T+++ DE TIVS+L A A+L ALDLG W+ ++ + K+ G ALIDMY
Sbjct: 445 HEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAK 504
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C ++ K+ +K+ SW +I AI+G +AL +F +M P+E+ +GV
Sbjct: 505 CGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEITMIGV 564
Query: 172 LSACTHN 178
LSAC H+
Sbjct: 565 LSACNHS 571
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 17/179 (9%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ + TA+V Y G++D AR+ FD+M +R V WTA+I GY+R A LF +M
Sbjct: 296 DLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQM- 354
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
I D +++ A L D+ K + + + + + +I Y +++
Sbjct: 355 ---IEKDSAAFNTMIDAYVKLG--DMCSARKLFDE--MPERSVVSWTIMIYGYSSNGNLD 407
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGVLSA 174
A +K+ FSW MI G + +AL +F +M S++PDEV V VL A
Sbjct: 408 SARSLFDAMPEKNLFSWNAMISGYXQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPA 466
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 14/160 (8%)
Query: 25 ARQCFDQMPERD-YVLWTAMIDGYLRVNRFREALTLFQEMQ-TSNIMGDEFTIVSILTAR 82
AR+ FD P RD L +MI Y+ + ++ E+ L+++++ ++ D FT + +
Sbjct: 213 ARRMFDHRPHRDDAFLCNSMIKAYVGMRQYSESFALYRDLRRNTSFTPDSFTFSVLAKSC 272
Query: 83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSWT 134
A A+ G+ I +++ D++A AL+DMY ++ A+K + SWT
Sbjct: 273 ALNMAIWEGQEIHSHVVAVGFCLDLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWT 332
Query: 135 TMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+I G SG+ D A +F QM I+ D A+ ++ A
Sbjct: 333 ALIGGYVRSGDMDNAGKLFDQM----IEKDSAAFNTMIDA 368
>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 113/185 (61%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D ISW +I+S ++ GQ+ A FD MP R V WTAMI GY R+ + +AL +F
Sbjct: 180 MVERDAISWNSIISGHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVF 239
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++MQ + DE +I+S+L A A L AL++G+WI Y D+N + NAL++MY C
Sbjct: 240 RQMQIVGVEPDEISIISVLPACAQLGALEVGKWIHMYCDRNGLLRKTSICNALMEMYSKC 299
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ +A + D SW+TMI GLA G +A+++F +M +A I+P+ + ++G+L
Sbjct: 300 GCIGQAYQLFDQMSKGDVISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITFLGLL 359
Query: 173 SACTH 177
SAC H
Sbjct: 360 SACAH 364
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 90/229 (39%), Gaps = 55/229 (24%)
Query: 3 NKDVISWTAIVSRYINRGQVDI---------ARQCFDQMPERDYVLWTAMIDGYLRVNRF 53
+ VI ++ S ++ VD+ A F Q+ E + L+ AMI + +
Sbjct: 34 HAHVIKYSLSQSSFLVTKMVDVCDKTEDLGYASLLFKQVKEPNGYLYNAMIRAHTHNKVY 93
Query: 54 REALTLFQEM-------QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKND 106
A+ ++EM + I D FT ++ + + L +LG+ + ++ K K++
Sbjct: 94 ALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSCSGLVCYNLGKQVHAHLCKFGPKSN 153
Query: 107 IFAGNALIDMYCICADVEKAQK-------------------------------------- 128
I NALIDMY CA + A K
Sbjct: 154 ITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSIISGHVGVGQMRKAGALFDLMPY 213
Query: 129 -DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
SWT MI G G+ AL +F QM ++PDE++ + VL AC
Sbjct: 214 RTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISIISVLPACA 262
>gi|225444117|ref|XP_002266487.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 553
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/181 (40%), Positives = 112/181 (61%), Gaps = 8/181 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+DV+S T + + Y++ G +D+AR FDQM +D V W +MI Y++ ++A+ LF++M
Sbjct: 238 RDVVSHTILFNGYVDMGSIDLARGIFDQMSVKDLVSWNSMIHAYVKAKHPKKAIELFRKM 297
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ + DE T+VS+L A A+L L G +I +N + D+F G ALIDMY C +
Sbjct: 298 ENEMVEPDETTMVSVLAACASLADLQNGRLAHRFIIQNNPRQDLFVGTALIDMYAKCGSL 357
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E+A +D F+WTT I GLA G+GDKAL +F++M + IKP++ +V VL AC
Sbjct: 358 EEAMVTFYKMDSRDVFTWTTAIEGLANHGHGDKALSLFTEMEKQGIKPNQATFVSVLMAC 417
Query: 176 T 176
+
Sbjct: 418 S 418
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 91/213 (42%), Gaps = 42/213 (19%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ DV A++ Y + GQV AR+ FD MP RD W ++ Y + E L LF+
Sbjct: 106 DSDVYVGNALLHLYGSTGQVTDARRLFDGMPHRDLASWNTLLGAY--NDNAVEVLVLFKR 163
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M I GD ++V + +A + + G+ + Y+ K ++ + NAL+ +Y C +
Sbjct: 164 MMYEGIGGDHISMVIVFSACGKIGGTEFGKEVHGYVIKVGIRPALSLSNALLGVYTKCGE 223
Query: 123 VEKAQ----------------------------------------KDKFSWTTMIVGLAI 142
++ AQ KD SW +MI
Sbjct: 224 MDAAQSLFVEMAAMRDVVSHTILFNGYVDMGSIDLARGIFDQMSVKDLVSWNSMIHAYVK 283
Query: 143 SGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ + KA+++F +M ++PDE V VL+AC
Sbjct: 284 AKHPKKAIELFRKMENEMVEPDETTMVSVLAAC 316
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 69/145 (47%), Gaps = 11/145 (7%)
Query: 40 WTAMIDGYLRVNRFREALTLFQE-MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYI 98
W +I + R A+ ++ ++ + D++T ++L A + +L G+ + ++
Sbjct: 41 WNCLIRAFSRSPTPITAILIYNHFIKGRFVFPDKYTYPAMLKACWRMGSLSKGKEVHAHV 100
Query: 99 DKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKAL 150
K + +D++ GNAL+ +Y V A +D SW T++ A + N + L
Sbjct: 101 TKTGLDSDVYVGNALLHLYGSTGQVTDARRLFDGMPHRDLASWNTLLG--AYNDNAVEVL 158
Query: 151 DMFSQMLRASIKPDEVAYVGVLSAC 175
+F +M+ I D ++ V V SAC
Sbjct: 159 VLFKRMMYEGIGGDHISMVIVFSAC 183
>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
Length = 660
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 110/183 (60%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ V+ T ++ Y G V +AR FD+ E++ W MI+G++ + + EAL LF+E
Sbjct: 219 GRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFRE 278
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
MQT I GD+ T+ S+L A +L AL+LG+W+ YI K ++ D+ G AL+DMY C
Sbjct: 279 MQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGS 338
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+E A +KD +WT +I+GLA+ G + AL F +M +KPD + +VGVL+A
Sbjct: 339 IETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAA 398
Query: 175 CTH 177
C+H
Sbjct: 399 CSH 401
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 98/182 (53%), Gaps = 9/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM- 63
D + +++ Y N G + AR+ FD+M ++ V W MI + + ++ EA+ LF M
Sbjct: 119 DTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMM 178
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
++ N+ +E T+V++LTA A R L + + I YID++ + L+D+YC C V
Sbjct: 179 KSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCV 238
Query: 124 E-------KAQ-KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ KAQ K+ FSW MI G N ++AL +F +M IK D+V +L AC
Sbjct: 239 QLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLAC 298
Query: 176 TH 177
TH
Sbjct: 299 TH 300
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G + AR F Q+P ++I G N +EAL +QEM ++ D +T S+
Sbjct: 36 GSLQYARLVFSQIPNPTSYTCNSIIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLF 95
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--DKF------ 131
+ R G+ I + K +D +A N L++MY C + A+K DK
Sbjct: 96 KS---CRNSSEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVV 152
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVAYVGVLSAC 175
SW TMI A ++A+ +F +M+++ ++KP+EV V VL+AC
Sbjct: 153 SWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTAC 197
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 73/171 (42%), Gaps = 25/171 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV TA+V Y G ++ A Q F +MPE+D + WTA+I G + AL F EM
Sbjct: 322 DVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMH 381
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ D T V +L A ++ +D G I N++ D Y I +E
Sbjct: 382 IKGVKPDAITFVGVLAACSHAGFVDEG---------------ISHFNSMSDTYGIQPTIE 426
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ ++ L +G +A ++ M A PD+ G+L AC
Sbjct: 427 H-------YGGLVDILGRAGRIAEAEELIKSMPMA---PDQFVLGGLLGAC 467
>gi|326511827|dbj|BAJ92058.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 581
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 117/178 (65%), Gaps = 9/178 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
++++S Y GQV+ AR+ FD MP+R+ V WT+MI GY ++ + +EA+ LF++MQ + +
Sbjct: 235 SSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVK 294
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
D+ TI +++++ + ALDLG ++ Y D + + DI N+LIDMY C D++KA
Sbjct: 295 VDDATISTVVSSCGQMGALDLGRYVHAYCDIHGLGKDISVKNSLIDMYSKCGDIKKAYDI 354
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGVLSACTHN 178
++D FSWT +I+G A +G +ALD+F+QM + P+E+ ++GVL++C+H
Sbjct: 355 FCGMVKRDNFSWTVIIMGFAANGLSGEALDLFAQMEEEGGVMPNEITFLGVLTSCSHG 412
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 10/183 (5%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLF 60
+ D +++ Y + AR D P+ D V W +I GY+ +AL F
Sbjct: 125 SSDTFVLNTLINMYSSCSYPSTARSVLDSAPKGASDTVSWNTIIAGYIHAGLPNKALQAF 184
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M +M D+ T+++ L A A + +G+ + N + + + G++LI MY C
Sbjct: 185 SQMAKGQVMLDDVTLLNALVACARTCMMKVGKLCHALLVTNGFEINCYMGSSLISMYAKC 244
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VE A+ ++ WT+MI G G +A+ +F M A +K D+ V+
Sbjct: 245 GQVEDARRIFDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVKVDDATISTVV 304
Query: 173 SAC 175
S+C
Sbjct: 305 SSC 307
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA--------- 121
D +++ + L+ A + ++ +G + K + +D F N LI+MY C+
Sbjct: 92 DNYSLSAALSTAARMPSVVVGAQLHALSVKLGLSSDTFVLNTLINMYSSCSYPSTARSVL 151
Query: 122 -DVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
K D SW T+I G +G +KAL FSQM + + D+V + L AC
Sbjct: 152 DSAPKGASDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVAC 206
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
KD+ +++ Y G + A F M +RD WT +I G+ EAL LF +
Sbjct: 329 GKDISVKNSLIDMYSKCGDIKKAYDIFCGMVKRDNFSWTVIIMGFAANGLSGEALDLFAQ 388
Query: 63 M-QTSNIMGDEFTIVSILTA 81
M + +M +E T + +LT+
Sbjct: 389 MEEEGGVMPNEITFLGVLTS 408
>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 623
Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 110/186 (59%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M N+DV+ W ++ Y G V+ F++MPER+ W A+I GY F E L F
Sbjct: 259 MPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSF 318
Query: 61 QEMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+ M + S++ ++ T+V++L+A A L ALDLG+W+ Y + + +K +++ GNAL+DMY
Sbjct: 319 KRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAK 378
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C +E A KD SW T+I GLA+ G AL++F QM A KPD + ++G+
Sbjct: 379 CGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGI 438
Query: 172 LSACTH 177
L ACTH
Sbjct: 439 LCACTH 444
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 8/137 (5%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
ARQ FDQ+P+ + LW +M GY + +RE + LF +M+ +I + FT +L +
Sbjct: 89 ARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGK 148
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKFSWTTM 136
+ AL GE + ++ K + + F G LIDMY V E +++ +WT+M
Sbjct: 149 INALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSM 208
Query: 137 IVGLAISGNGDKALDMF 153
I G +S + A +F
Sbjct: 209 INGYILSADLVSARRLF 225
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 82/179 (45%), Gaps = 36/179 (20%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V++WT++++ YI + AR+ FD PERD VLW M+ GY+ EA LF
Sbjct: 197 MFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLF 256
Query: 61 QEMQTSNIMGDEF--TIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC 118
EM ++M F T++ N+ AL+ L +
Sbjct: 257 HEMPNRDVM---FWNTVLKGYATNGNVEALE----------------------GLFE--- 288
Query: 119 ICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSACT 176
E +++ FSW +I G A +G + L F +ML S + P++ V VLSAC
Sbjct: 289 -----EMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACA 342
>gi|356499342|ref|XP_003518500.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g29230-like [Glycine max]
Length = 446
Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 113/186 (60%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + DV+SW ++S Y N G+V++ + F++MP R+ W +I GY+R F+EAL F
Sbjct: 82 MPDCDVMSWNTVLSGYANNGEVELFVKVFEEMPARNVYSWNGLIGGYVRNGLFKEALECF 141
Query: 61 QEMQTSN-IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+ M ++ +++T+V++L+A + L L++G+W+ Y D K ++F GNALIDMY
Sbjct: 142 KRMLVDGVVVPNDYTVVAVLSACSRLGDLEIGKWVHVYADSIGYKGNLFVGNALIDMYAK 201
Query: 120 CADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C +EKA KD +W T+I LA+ + AL +F M RA +PD V +VG+
Sbjct: 202 CGVIEKALDVFDGLDVKDIITWNTIINSLAMHXHAADALSLFEGMKRAGERPDGVTFVGI 261
Query: 172 LSACTH 177
LSACTH
Sbjct: 262 LSACTH 267
>gi|7362769|emb|CAB83139.1| putative protein [Arabidopsis thaliana]
Length = 558
Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 15/190 (7%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+KD+ +W ++V+ Y G +D AR+ FD+MPER+ + W+ +I+GY+ +++EAL LF+E
Sbjct: 125 SKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFRE 184
Query: 63 MQTSN-----IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
MQ + +EFT+ ++L+A L AL+ G+W+ YIDK V+ DI G ALIDMY
Sbjct: 185 MQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMY 244
Query: 118 CICADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVA 167
C +E+A +KD +++ MI LA+ G D+ +FS+M + +I P+ V
Sbjct: 245 AKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVT 304
Query: 168 YVGVLSACTH 177
+VG+L AC H
Sbjct: 305 FVGILGACVH 314
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 61/166 (36%), Gaps = 44/166 (26%)
Query: 54 REALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNAL 113
++++ M+ + D T +L + N L LG+ I + D F +L
Sbjct: 44 HSPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSL 103
Query: 114 IDMYCICADVEKAQ---------------------------------------KDKFSWT 134
++MY C D+ AQ ++ SW+
Sbjct: 104 LNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWS 163
Query: 135 TMIVGLAISGNGDKALDMFSQML-----RASIKPDEVAYVGVLSAC 175
+I G + G +ALD+F +M A ++P+E VLSAC
Sbjct: 164 CLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSAC 209
>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 573
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 15/190 (7%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+KD+ +W ++V+ Y G +D AR+ FD+MPER+ + W+ +I+GY+ +++EAL LF+E
Sbjct: 125 SKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFRE 184
Query: 63 MQTSN-----IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
MQ + +EFT+ ++L+A L AL+ G+W+ YIDK V+ DI G ALIDMY
Sbjct: 185 MQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMY 244
Query: 118 CICADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVA 167
C +E+A +KD +++ MI LA+ G D+ +FS+M + +I P+ V
Sbjct: 245 AKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVT 304
Query: 168 YVGVLSACTH 177
+VG+L AC H
Sbjct: 305 FVGILGACVH 314
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 61/166 (36%), Gaps = 44/166 (26%)
Query: 54 REALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNAL 113
++++ M+ + D T +L + N L LG+ I + D F +L
Sbjct: 44 HSPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSL 103
Query: 114 IDMYCICADVEKAQ---------------------------------------KDKFSWT 134
++MY C D+ AQ ++ SW+
Sbjct: 104 LNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWS 163
Query: 135 TMIVGLAISGNGDKALDMFSQML-----RASIKPDEVAYVGVLSAC 175
+I G + G +ALD+F +M A ++P+E VLSAC
Sbjct: 164 CLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSAC 209
>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
[Vitis vinifera]
Length = 836
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 112/186 (60%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NK V+SW ++ + +I G V+ A + F+Q+PER+ V W MI G ++ + F +A+ LF
Sbjct: 394 MSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELF 453
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ I D T++ I +A L A +L +W+ TYI+KN + D+ AL+DM+ C
Sbjct: 454 REMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARC 513
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
D + A ++D +WT I +A+ GNG+ A +F+QML +KPD V +V VL
Sbjct: 514 GDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVL 573
Query: 173 SACTHN 178
+AC+H
Sbjct: 574 TACSHG 579
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 8/179 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+DV ++ Y G +D + F+ M ER+ V WT++I GY R +R +EA++LF EM
Sbjct: 164 EDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEM 223
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ I T+V +++A A LR LD+GE + YI + +K + NAL+DMY C +
Sbjct: 224 VEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAI 283
Query: 124 EKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+ A+ ++ + T++ A G +AL + +ML+ +PD V + +SA
Sbjct: 284 DAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISA 342
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 90/206 (43%), Gaps = 39/206 (18%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+V Y+ G +D A++ FD+ +R+ VL+ ++ Y R REAL + EM
Sbjct: 272 ALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRP 331
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC---------- 120
D T++S ++A A L L G+ Y+ +N ++ GN +IDMY C
Sbjct: 332 DRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVF 391
Query: 121 ---------------------ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALD 151
DVE A +++ W TMI GL + A++
Sbjct: 392 DLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIE 451
Query: 152 MFSQMLRASIKPDEVAYVGVLSACTH 177
+F +M IK D V +G+ SAC +
Sbjct: 452 LFREMQGEGIKADRVTMMGIASACGY 477
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 13/168 (7%)
Query: 22 VDIARQCFDQMPE---RDYVLW--TAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIV 76
+D AR+ F+ E D L+ ++I GY REA+ L+ M + + +T
Sbjct: 76 LDYARKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFP 135
Query: 77 SILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK-------- 128
+L+ + A G + + K ++ D+F N LI Y C ++ K
Sbjct: 136 FVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSER 195
Query: 129 DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+ SWT++I G A +A+ +F +M+ A I+P V V V+SAC
Sbjct: 196 NVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACA 243
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 26/166 (15%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V + G A Q F++M ERD WTA I A LF +M +
Sbjct: 504 TALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVK 563
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
D V +LTA ++ ++ G I + ++ + + I ++D+
Sbjct: 564 PDVVLFVQVLTACSHGGQVEQGLHIFSLMEDHGISPQIEHYGCMVDL------------- 610
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
L +G +A D+ M ++P++V + +L+AC
Sbjct: 611 ----------LGRAGLLREAFDLIKSM---PMEPNDVVWGSLLAAC 643
>gi|413924746|gb|AFW64678.1| hypothetical protein ZEAMMB73_926861 [Zea mays]
Length = 655
Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats.
Identities = 75/185 (40%), Positives = 110/185 (59%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD++S TA+VS Y +V+IAR FD MPE+D V W+AMI GY+ N+ EAL+LF
Sbjct: 312 MPRKDLVSSTAMVSGYARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDSNQPNEALSLF 371
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
MQ I DE T++S+++A ANL +LD +WI +I + + + NALIDM+ C
Sbjct: 372 NGMQECGIRSDEITMLSVISACANLGSLDKAKWIHAFIKNSGLNKVLHICNALIDMFAKC 431
Query: 121 ADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ E K+ +WT+MI A+ G+G +L +F QM +P+EV ++ +L
Sbjct: 432 GGINLALNVFNEMPLKNVITWTSMISAFAMHGDGKSSLRLFEQMKDEGAEPNEVTFLSLL 491
Query: 173 SACTH 177
AC H
Sbjct: 492 YACCH 496
Score = 95.9 bits (237), Expect = 6e-18, Method: Composition-based stats.
Identities = 58/207 (28%), Positives = 95/207 (45%), Gaps = 39/207 (18%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+ Y G V R+ FD M RD V W M+D Y + ++EAL LF +M+ S ++
Sbjct: 189 TALAGAYAACGCVRDTRKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLLFAKMKNSGVV 248
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
D+ + ++L A ++R L +G+ I +Y+ + + +ALI +Y CA++E A
Sbjct: 249 PDQLILATVLPACGHIRHLRIGKAIHSYMLVSDMIIGAHISSALISLYASCANMEMAEKL 308
Query: 127 ------------------------------------QKDKFSWTTMIVGLAISGNGDKAL 150
+KD SW+ MI G S ++AL
Sbjct: 309 YNEMPRKDLVSSTAMVSGYARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDSNQPNEAL 368
Query: 151 DMFSQMLRASIKPDEVAYVGVLSACTH 177
+F+ M I+ DE+ + V+SAC +
Sbjct: 369 SLFNGMQECGIRSDEITMLSVISACAN 395
>gi|225453406|ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
[Vitis vinifera]
gi|297734603|emb|CBI16654.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 110/187 (58%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V+SWT ++ Y + G +D AR FD MPE++ W AMI GY + + EAL LF
Sbjct: 211 MPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYRQNKQPYEALKLF 270
Query: 61 QEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
EMQ T+++ DE TIVS+L A A+L ALDLG W+ ++ + K+ G ALIDMY
Sbjct: 271 HEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAK 330
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C ++ K+ +K+ SW +I AI+G +AL +F +M P+E+ +GV
Sbjct: 331 CGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEITMIGV 390
Query: 172 LSACTHN 178
LSAC H+
Sbjct: 391 LSACNHS 397
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 17/179 (9%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ + TA+V Y G++D AR+ FD+M +R V WTA+I GY+R A LF +M
Sbjct: 122 DLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQM- 180
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
I D +++ A L D+ K + + + + +I Y +++
Sbjct: 181 ---IEKDSAAFNTMIDAYVKLG--DMCSARKLF--DEMPERSVVSWTIMIYGYSSNGNLD 233
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGVLSA 174
A +K+ FSW MI G + +AL +F +M S++PDEV V VL A
Sbjct: 234 SARSLFDAMPEKNLFSWNAMISGYRQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPA 292
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 14/160 (8%)
Query: 25 ARQCFDQMPERD-YVLWTAMIDGYLRVNRFREALTLFQEMQ-TSNIMGDEFTIVSILTAR 82
AR+ FD P RD L +MI Y+ + ++ E+ L+++++ ++ D FT + +
Sbjct: 39 ARRMFDHRPHRDDAFLCNSMIKAYVGMRQYSESFALYRDLRRNTSFTPDSFTFSVLAKSC 98
Query: 83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSWT 134
A A+ G+ I +++ D++A AL+DMY ++ A+K + SWT
Sbjct: 99 ALNMAIWEGQEIHSHVVAVGFCLDLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWT 158
Query: 135 TMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+I G SG+ D A +F QM I+ D A+ ++ A
Sbjct: 159 ALIGGYVRSGDMDNAGKLFDQM----IEKDSAAFNTMIDA 194
>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 110/186 (59%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M N+DV+ W ++ Y G V+ F++MPER+ W A+I GY F E L F
Sbjct: 101 MPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSF 160
Query: 61 QEMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+ M + S++ ++ T+V++L+A A L ALDLG+W+ Y + + +K +++ GNAL+DMY
Sbjct: 161 KRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAK 220
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C +E A KD SW T+I GLA+ G AL++F QM A KPD + ++G+
Sbjct: 221 CGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGI 280
Query: 172 LSACTH 177
L ACTH
Sbjct: 281 LCACTH 286
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 32/177 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V++WT++++ YI + AR+ FD PERD VLW M+ GY+ EA LF
Sbjct: 39 MFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLF 98
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM ++M T++ N+ AL+ L +
Sbjct: 99 HEMPNRDVMFWN-TVLKGYATNGNVEALE----------------------GLFE----- 130
Query: 121 ADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSACT 176
E +++ FSW +I G A +G + L F +ML S + P++ V VLSAC
Sbjct: 131 ---EMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACA 184
>gi|242054205|ref|XP_002456248.1| hypothetical protein SORBIDRAFT_03g032860 [Sorghum bicolor]
gi|241928223|gb|EES01368.1| hypothetical protein SORBIDRAFT_03g032860 [Sorghum bicolor]
Length = 402
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 109/181 (60%), Gaps = 8/181 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
DV+ TA+V G VD AR FD MP+RD+V W AMI GY+ V R REAL LF EM
Sbjct: 178 PDVVCVTAMVGALAAGGDVDAARGLFDGMPQRDHVAWNAMIAGYVHVGRSREALRLFDEM 237
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
++ E T+VS+LTA A + ALD G+W+ Y+ ++ + G AL+DMY C V
Sbjct: 238 LSAGTTVGEATLVSVLTACAQIGALDRGKWVHWYVRSRGMQMSVKLGTALVDMYSKCGAV 297
Query: 124 --------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
A+++ ++WT+ + GLA++G G + L +F +M+ A I+P+ V++V VL C
Sbjct: 298 VTAMEVFESMAERNVYTWTSAVSGLAMNGMGVECLQLFKRMVSAGIQPNGVSFVAVLGGC 357
Query: 176 T 176
+
Sbjct: 358 S 358
>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Vitis vinifera]
Length = 647
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 117/187 (62%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++DVISWT+++ Y G ++ A + FD +P +D V WTAM+ GY + R REAL +F
Sbjct: 201 MLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVF 260
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV--KNDIFAGNALIDMYC 118
+ MQ + + DE T+V +++A A L A W++ +++ +++ G+ALIDMY
Sbjct: 261 ERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYA 320
Query: 119 ICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C VE A +++ +S+++MIVG A+ G A+++F +ML+ IKP+ V ++G
Sbjct: 321 KCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIG 380
Query: 171 VLSACTH 177
VL+AC+H
Sbjct: 381 VLTACSH 387
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 83/192 (43%), Gaps = 40/192 (20%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
R F Q+ + LWTA+I GY F E++ L+ M+ I FT ++L A +
Sbjct: 92 PRLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSA 151
Query: 85 LRALDLGEWIKTY-IDKNKVKNDIFAGNALIDMYCIC----------------------- 120
++LG + T I +D++ GN LIDMY C
Sbjct: 152 ALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTS 211
Query: 121 --------ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 164
++E A KD +WT M+ G A + +AL++F +M A +K D
Sbjct: 212 LIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTD 271
Query: 165 EVAYVGVLSACT 176
EV VGV+SAC
Sbjct: 272 EVTLVGVISACA 283
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 81/184 (44%), Gaps = 16/184 (8%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
+V+ +A++ Y G V+ A + F++M ER+ +++MI G+ A+ LF
Sbjct: 305 PTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFD 364
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK---VKNDIFAGNALIDMYC 118
EM + I + T + +LTA ++ ++ G+ + +++ D +A ++D+
Sbjct: 365 EMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYA--CMVDLLG 422
Query: 119 ICADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
+E+A W ++ I GN D A S + ++P+ +
Sbjct: 423 RAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIAASHLFE--LEPNGIGNY 480
Query: 170 GVLS 173
+LS
Sbjct: 481 ILLS 484
>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 591
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 110/182 (60%), Gaps = 8/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV A++ Y+ ++ A + FD+MP ++ V W AMI G R+REAL F+ MQ
Sbjct: 247 DVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQ 306
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ DE T+V +L + ANL L++G+W+ Y+ +N + D F GNAL+DMY C ++
Sbjct: 307 DKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNALLDMYAKCGSID 366
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+A ++D +S+T MI GLA+ G + A +FS+M R I+P+EV ++G+L AC+
Sbjct: 367 EAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACS 426
Query: 177 HN 178
H
Sbjct: 427 HG 428
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 92/169 (54%), Gaps = 15/169 (8%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G + ++ FD+ P RD V WT +I + + + A+ F EM + D T+V +L
Sbjct: 160 GSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVL 219
Query: 80 TARANLRALDLGE----WIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-------- 127
+A +NL L+LG+ +I+ YID +K D+F GNAL+DMY C D+ A
Sbjct: 220 SACSNLGDLNLGQKVHSYIRHYID---MKADVFVGNALLDMYLKCDDLNSAYKVFDEMPV 276
Query: 128 KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
K+ +W MI GLA G +ALD F M +KPDEV VGVL++C
Sbjct: 277 KNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCA 325
>gi|115477555|ref|NP_001062373.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|50725675|dbj|BAD33141.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113624342|dbj|BAF24287.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|215697775|dbj|BAG91968.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 581
Score = 149 bits (376), Expect = 5e-34, Method: Composition-based stats.
Identities = 71/177 (40%), Positives = 116/177 (65%), Gaps = 9/177 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+++VS Y G V+ AR+ F++MPER+ V WT+MI G + RF+EA+ LF++MQ + +
Sbjct: 235 SSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVK 294
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
D+ TI +++++ + ALDLG ++ Y D + + ++ N+LIDMY C DV KA
Sbjct: 295 ADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQI 354
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGVLSACTH 177
++D F+WT MI+G A++G +ALD+F+QM + P+EV ++GVL+AC+H
Sbjct: 355 FHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSH 411
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 10/181 (5%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFQE 62
D A+++ Y + AR D P D V W +I GY+R +AL F +
Sbjct: 127 DSFVLNALINMYSSCNYPASARLVLDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQ 186
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M + DE T++++L A A A+ +G + N + + + G++L+ MY C
Sbjct: 187 MAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGM 246
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
VE+A +++ WT+MI G SG +A+D+F M A +K D+ V+S+
Sbjct: 247 VEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSS 306
Query: 175 C 175
C
Sbjct: 307 C 307
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 10/120 (8%)
Query: 66 SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK 125
+N+ D +++ ++A A + +LD+G K + +D F NALI+MY C
Sbjct: 87 ANMTLDNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPAS 146
Query: 126 AQ----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
A+ D SW T+I G G +KAL F QM + ++ DEV + VL AC
Sbjct: 147 ARLVLDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVAC 206
>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 113/184 (61%), Gaps = 8/184 (4%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
++ +V+ W ++ + G + A+ FD+MP+R V W MI GY + F EA+ LFQ
Sbjct: 200 QDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQ 259
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
EMQ+SNI + T+VS+L A A + AL+LG+WI Y KNK++ D G+AL+DMY C
Sbjct: 260 EMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCG 319
Query: 122 DVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+++A +++ +W+ +I A+ G + A+ F M +A + P++VAY+G+LS
Sbjct: 320 SIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILS 379
Query: 174 ACTH 177
AC+H
Sbjct: 380 ACSH 383
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 86/229 (37%), Gaps = 64/229 (27%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFR---EALTLFQ 61
+VI + A SR +D AR F QMPE + W ++ N EAL LF
Sbjct: 56 EVIKFCAFSSR-----DIDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFS 110
Query: 62 EMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M + + FT S+L A A L G+ I I K D F + L+ MY +C
Sbjct: 111 AMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMC 170
Query: 121 ADVE----------------------------------------------KAQKDKF--- 131
A +E K+ K+ F
Sbjct: 171 AVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEM 230
Query: 132 ------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
SW MI G A +G+ +A+++F +M ++I P+ V V VL A
Sbjct: 231 PQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPA 279
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 80/177 (45%), Gaps = 28/177 (15%)
Query: 2 KNK---DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALT 58
KNK D + +A+V Y G +D A Q F+ +P+R+ + W+A+I + R +A+
Sbjct: 298 KNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAII 357
Query: 59 LFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC 118
F M + + ++ + IL+A ++ ++ G +++ K + I+ Y
Sbjct: 358 HFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVK------VVGLQPRIEHYG 411
Query: 119 ICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
D+ L +G+ ++A ++ M I+PD+V + +L AC
Sbjct: 412 CMVDL----------------LGRAGHLEEAEELIRNM---PIEPDDVIWKALLGAC 449
>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
Length = 688
Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
+ K+V+SWT+++S Y G +++ARQ FDQMP ++ V W +MI YLR ++REAL LF
Sbjct: 323 QEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFN 382
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
+M+ S ++ DE T+VSIL A + L L +G+ I YI NK + N+LIDMY C
Sbjct: 383 KMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCG 442
Query: 122 DV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
V E K+ SW +I LA+ G G +A+ +F +M PDE+ G+LS
Sbjct: 443 PVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLS 502
Query: 174 ACTHN 178
AC+H+
Sbjct: 503 ACSHS 507
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 94/244 (38%), Gaps = 86/244 (35%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G + A++ FDQ+P+ + ++ ++I GY + +A+ LF+ M S + +EFT+ +L
Sbjct: 162 GDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVL 221
Query: 80 TARANLRA-------------LDLGEWI----------------------------KTYI 98
A A L +G + KT +
Sbjct: 222 KACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLV 281
Query: 99 DKNK------VKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISG 144
N VK DI NAL DMY C ++ AQ K+ SWT+MI A G
Sbjct: 282 SWNSMIEITGVKIDIIVRNALXDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHG 341
Query: 145 NGD-------------------------------KALDMFSQMLRASIKPDEVAYVGVLS 173
+ + +ALD+F++M + + PDE V +L+
Sbjct: 342 SIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILA 401
Query: 174 ACTH 177
AC+
Sbjct: 402 ACSQ 405
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 25/170 (14%)
Query: 6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT 65
V + +++ Y G V A F +MP ++ V W +I EA+ LF+EMQ
Sbjct: 428 VTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQA 487
Query: 66 SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK 125
+ DE T+ +L+A ++ +D+G + Y D+ V +Y + ++E
Sbjct: 488 DGTLPDEITLTGLLSACSHSGLVDMGLY---YFDRMGV------------IYRVXREIEH 532
Query: 126 AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ L G +A+++ +M +KPD V + +L AC
Sbjct: 533 -------YACMVDLLGRGGLLGEAIELIGRM---PMKPDVVVWGALLGAC 572
>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
Length = 744
Score = 149 bits (376), Expect = 5e-34, Method: Composition-based stats.
Identities = 73/179 (40%), Positives = 109/179 (60%), Gaps = 8/179 (4%)
Query: 8 SWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN 67
SW AI+ Y G VD+AR FD+M RD + + +M+ GY+ + REAL LF M+ +
Sbjct: 308 SWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHD 367
Query: 68 IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA- 126
+ D FT+V++LTA A+L AL G + I++ V+ DI+ G AL+DMY C V++A
Sbjct: 368 LRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEAT 427
Query: 127 -------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
++D +WT MI GLA +G G AL+ F QM +P+ V+Y+ VL+AC+H+
Sbjct: 428 IVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHS 486
Score = 92.4 bits (228), Expect = 7e-17, Method: Composition-based stats.
Identities = 53/162 (32%), Positives = 82/162 (50%), Gaps = 9/162 (5%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD ++WT ++S G + + Q P RD + WT++I Y R NR REA+ F+ M
Sbjct: 171 KDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTM 230
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ I DE T++++L+A A L+ L+LG + +++ + ALIDMY C D
Sbjct: 231 LSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDF 290
Query: 124 EKAQK--DKF-------SWTTMIVGLAISGNGDKALDMFSQM 156
AQ+ D SW +I G G+ D A +F +M
Sbjct: 291 GHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEM 332
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 25/171 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ TA++ Y+ G+VD A F +M +RD WTAMI G + AL F +M+
Sbjct: 406 DIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMR 465
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ + +++LTA ++ L+ G + Y D+ ++ +Y I +E
Sbjct: 466 CDGFQPNSVSYIAVLTACSHSCLLNEG---RLYFDEMRI------------LYNIHPQIE 510
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ MI L SG D+A+D+ M I+P+ V + +LSAC
Sbjct: 511 H-------YGCMIDLLGRSGLLDEAMDLVKTM---PIQPNAVIWASILSAC 551
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 128 KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+D SWT++I + + +A+ F ML I PDEV + VLSAC
Sbjct: 202 RDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSAC 249
>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
Length = 799
Score = 149 bits (376), Expect = 5e-34, Method: Composition-based stats.
Identities = 73/179 (40%), Positives = 109/179 (60%), Gaps = 8/179 (4%)
Query: 8 SWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN 67
SW AI+ Y G VD+AR FD+M RD + + +M+ GY+ + REAL LF M+ +
Sbjct: 308 SWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHD 367
Query: 68 IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA- 126
+ D FT+V++LTA A+L AL G + I++ V+ DI+ G AL+DMY C V++A
Sbjct: 368 LRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEAT 427
Query: 127 -------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
++D +WT MI GLA +G G AL+ F QM +P+ V+Y+ VL+AC+H+
Sbjct: 428 IVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHS 486
Score = 92.4 bits (228), Expect = 7e-17, Method: Composition-based stats.
Identities = 53/162 (32%), Positives = 82/162 (50%), Gaps = 9/162 (5%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD ++WT ++S G + + Q P RD + WT++I Y R NR REA+ F+ M
Sbjct: 171 KDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTM 230
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ I DE T++++L+A A L+ L+LG + +++ + ALIDMY C D
Sbjct: 231 LSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDF 290
Query: 124 EKAQK--DKF-------SWTTMIVGLAISGNGDKALDMFSQM 156
AQ+ D SW +I G G+ D A +F +M
Sbjct: 291 GHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEM 332
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 25/171 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ TA++ Y+ G+VD A F +M +RD WTAMI G + AL F +M+
Sbjct: 406 DIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMR 465
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ + +++LTA ++ L+ G + Y D+ ++ +Y I +E
Sbjct: 466 CDGFQPNSVSYIAVLTACSHSCLLNEG---RLYFDEMRI------------LYNIHPQIE 510
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ MI L SG D+A+D+ M I+P+ V + +LSAC
Sbjct: 511 H-------YGCMIDLLGRSGLLDEAMDLVKTM---PIQPNAVIWASILSAC 551
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 128 KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+D SWT++I + + +A+ F ML I PDEV + VLSAC
Sbjct: 202 RDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSAC 249
>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 113/186 (60%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ KD ++WT ++ Y + AR+ + MP++D V W A+I Y + + EAL +F
Sbjct: 295 MEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVF 354
Query: 61 QEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
E+Q NI ++ T+VS L+A A + AL+LG WI +YI KN +K + + +ALI MY
Sbjct: 355 HELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSK 414
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C D+EKA ++D F W+ MI GLA+ G G +A+DMF +M A++KP+ V + V
Sbjct: 415 CGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNV 474
Query: 172 LSACTH 177
AC+H
Sbjct: 475 FCACSH 480
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 104/182 (57%), Gaps = 12/182 (6%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV +++ Y + G +D A + F + E+D V W +MI+G+++ +AL LF++M+
Sbjct: 167 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 226
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ ++ T+V +L+A A +R L+ G + +YI++N+V ++ NA++DMY C +E
Sbjct: 227 SEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIE 286
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A +KD +WTTM+ G AIS + + A ++L A K D VA+ ++SA
Sbjct: 287 DAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAA----REVLNAMPKKDIVAWNALISAYE 342
Query: 177 HN 178
N
Sbjct: 343 QN 344
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 10/166 (6%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM--QTSNIMGDEFTIVS 77
++ AR+ FD++P+ + W +I Y ++ F +M S +++T
Sbjct: 79 ASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPF 138
Query: 78 ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKD 129
++ A A + +L LG+ + K+ V +D+F N+LI Y C D++ A +KD
Sbjct: 139 LIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKD 198
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
SW +MI G G+ DKAL++F +M +K V VGVLSAC
Sbjct: 199 VVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSAC 244
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+A++ Y G ++ AR+ F+ + +RD +W+AMI G EA+ +F +MQ +N+
Sbjct: 406 SALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVK 465
Query: 70 GDEFTIVSILTARANLRALDLGE 92
+ T ++ A ++ +D E
Sbjct: 466 PNGVTFTNVFCACSHTGLVDEAE 488
>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
Length = 549
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
+ K+V+SWT+++S Y G +++ARQ FDQMP ++ V W +MI YLR ++REAL LF
Sbjct: 184 QEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFN 243
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
+M+ S ++ DE T+VSIL A + L L +G+ I YI NK + N+LIDMY C
Sbjct: 244 KMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCG 303
Query: 122 DV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
V E K+ SW +I LA+ G G +A+ +F +M PDE+ G+LS
Sbjct: 304 PVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLS 363
Query: 174 ACTHN 178
AC+H+
Sbjct: 364 ACSHS 368
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 94/231 (40%), Gaps = 73/231 (31%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G + A++ FDQ+P+ + ++ ++I GY + +A+ LF+ M S + +EFT+ +L
Sbjct: 36 GDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVL 95
Query: 80 TA-----------RANLRALDLG---------EWIKTYID--------------KNKVKN 105
A + A+ LG I Y+ +K
Sbjct: 96 KACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLI 155
Query: 106 DIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGD---------- 147
DI NAL+DMY C ++ AQ K+ SWT+MI A G+ +
Sbjct: 156 DIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMP 215
Query: 148 ---------------------KALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+ALD+F++M + + PDE V +L+AC+
Sbjct: 216 GKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQ 266
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 25/170 (14%)
Query: 6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT 65
V + +++ Y G V A F +MP ++ V W +I EA+ LF+EMQ
Sbjct: 289 VTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQA 348
Query: 66 SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK 125
+ DE T+ +L+A ++ +D+G + Y D+ V +Y + ++E
Sbjct: 349 DGTLPDEITLTGLLSACSHSGLVDMGLY---YFDRMGV------------IYRVPREIEH 393
Query: 126 AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ L G +A+++ +M +KPD V + +L AC
Sbjct: 394 -------YACMVDLLGRGGLLGEAIELIGRM---PMKPDVVVWGALLGAC 433
>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 109/176 (61%), Gaps = 8/176 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V+ Y V ARQ FD++P+R+ V W A+I GY FR+ + +F+EMQ +
Sbjct: 181 TALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAK 240
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-- 127
E T+V +L A A+L AL+ G WI YID N+++ ++F G ALIDMY C V++A+
Sbjct: 241 PVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKI 300
Query: 128 ------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
K+ ++W +I G A++G G+ AL FS+M+ KPDEV ++GVL AC H
Sbjct: 301 FKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCH 356
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 8/147 (5%)
Query: 39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYI 98
L +MI Y N+ ++ ++ +M + I D T ++L + A L +LG+ I I
Sbjct: 109 LCNSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCI 168
Query: 99 DKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKAL 150
+ +++++ AL++MY C+ V A+ ++ SW +I G + K +
Sbjct: 169 IQMGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVI 228
Query: 151 DMFSQMLRASIKPDEVAYVGVLSACTH 177
D+F +M A KP EV VGVL AC H
Sbjct: 229 DVFREMQIAGAKPVEVTMVGVLLACAH 255
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 67/171 (39%), Gaps = 25/171 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+V TA++ Y G VD A + F M ++ W +I GY R AL F M
Sbjct: 277 NVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMI 336
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
DE T + +L A + ++ G +TY K + F I+ Y D+
Sbjct: 337 MEKFKPDEVTFLGVLCACCHQGLVNEG---RTYFTSMK---EEFGLRPRIEHYGCMVDL- 389
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
L +G D+A + M S++PD + + +L AC
Sbjct: 390 ---------------LGRAGFLDEAQQLIQAM---SMQPDPIIWRELLGAC 422
>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Vitis vinifera]
Length = 550
Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 119/186 (63%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD++SW +++ Y RG+++ AR+ FD++P+RD V W AMI GY+ ++AL +F
Sbjct: 205 MPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMF 264
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKN-DIFAGNALIDMYCI 119
+EM++ + DE T++S+L+A +L LD G+ I I + ++ + GNALIDMY
Sbjct: 265 EEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAK 324
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C + +A +KD +W +++ GLA G+ +K++ +F++M + I+PDE+ +VGV
Sbjct: 325 CGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGV 384
Query: 172 LSACTH 177
L AC+H
Sbjct: 385 LVACSH 390
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 66/161 (40%), Gaps = 31/161 (19%)
Query: 16 YINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTI 75
+ N G + +AR FD +RD V W+A+ GY R A LF EM
Sbjct: 158 HANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEMPVK--------- 208
Query: 76 VSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTT 135
DL W I + ++ + L D E ++D +W
Sbjct: 209 -------------DLVSW-NVMITGYAKRGEMESARKLFD--------EVPKRDVVTWNA 246
Query: 136 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
MI G + G+ +AL+MF +M PDEV + +LSACT
Sbjct: 247 MIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACT 287
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 10/154 (6%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
++ V+ A++ Y G + A + F M E+D W +++ G +++ LF
Sbjct: 308 RDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFT 367
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM+ I DE T V +L A ++ ++ G ++ D+ ++ +I ++D+
Sbjct: 368 EMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRA 427
Query: 121 A---------DVEKAQKDKFSWTTMIVGLAISGN 145
D K + + W T++ I GN
Sbjct: 428 GLLNEAFDFIDTMKIEPNAIVWRTLLGACRIHGN 461
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 127 QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+ D F W TMI G A S + A+ ++SQM ++PD+ + VL ACT
Sbjct: 75 EPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACT 124
>gi|255542916|ref|XP_002512521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548482|gb|EEF49973.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 422
Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 110/185 (59%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+++ V SW +VS G V AR+ F+ M E+D + W++MIDGY++ ++EAL +F
Sbjct: 221 MEDRSVGSWNVMVSGLAKNGMVKEARELFNDMREKDEISWSSMIDGYIKGGNYKEALEVF 280
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
MQ I +F + S+L A ANL ALD G WI Y+ KN + D G AL+DMY C
Sbjct: 281 NVMQEEKIRPKKFVLSSVLAACANLGALDQGRWIHAYVKKNPMYLDAVLGTALVDMYAKC 340
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ A +K+ F+W MI GLA+ G + A+ +F +M + ++ +E+ +VG+L
Sbjct: 341 GRLDMAWDVFETMKEKEVFTWNAMICGLAMHGRAEDAIKLFLKMQKEKVRSNEITFVGLL 400
Query: 173 SACTH 177
+AC H
Sbjct: 401 NACAH 405
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 31/172 (18%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV +A + Y G + AR+ D+ E D + + AMIDGY + A LF++M+
Sbjct: 163 DVHIRSAGIQMYATLGHMAAARRMLDEDGESDVICFNAMIDGYYKFGDVDSAKELFEKME 222
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
++ G +VS L ++ + ++ ND+
Sbjct: 223 DRSV-GSWNVMVSGLAKNGMVK------------EARELFNDM----------------- 252
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+KD+ SW++MI G GN +AL++F+ M I+P + VL+AC
Sbjct: 253 -REKDEISWSSMIDGYIKGGNYKEALEVFNVMQEEKIRPKKFVLSSVLAACA 303
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + TA+V Y G++D+A F+ M E++ W AMI G R +A+ LF +MQ
Sbjct: 326 DAVLGTALVDMYAKCGRLDMAWDVFETMKEKEVFTWNAMICGLAMHGRAEDAIKLFLKMQ 385
Query: 65 TSNIMGDEFTIVSILTARANLRALDLG 91
+ +E T V +L A A+ +D G
Sbjct: 386 KEKVRSNEITFVGLLNACAHKGMVDEG 412
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 65/148 (43%), Gaps = 8/148 (5%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81
+D+A FD +P+ + ++ +I L + +A+ + +M +N ++FT S+L A
Sbjct: 79 IDLAFTVFDHVPKPNVFVYNIIIKACLDNDEPFKAICFYYKMVAANARPNKFTYPSLLKA 138
Query: 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKFSW 133
A G + ++ K + D+ +A I MY + E + D +
Sbjct: 139 CGVATAAKEGVQLHGHVIKQGLTGDVHIRSAGIQMYATLGHMAAARRMLDEDGESDVICF 198
Query: 134 TTMIVGLAISGNGDKALDMFSQMLRASI 161
MI G G+ D A ++F +M S+
Sbjct: 199 NAMIDGYYKFGDVDSAKELFEKMEDRSV 226
>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
Length = 526
Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 119/186 (63%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD++SW +++ Y RG+++ AR+ FD++P+RD V W AMI GY+ ++AL +F
Sbjct: 170 MPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMF 229
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKN-DIFAGNALIDMYCI 119
+EM++ + DE T++S+L+A +L LD G+ I I + ++ + GNALIDMY
Sbjct: 230 EEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAK 289
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C + +A +KD +W +++ GLA G+ +K++ +F++M + I+PDE+ +VGV
Sbjct: 290 CGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGV 349
Query: 172 LSACTH 177
L AC+H
Sbjct: 350 LVACSH 355
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 66/161 (40%), Gaps = 31/161 (19%)
Query: 16 YINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTI 75
+ N G + +AR FD +RD V W+A+ GY R A LF EM
Sbjct: 123 HANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEMPVK--------- 173
Query: 76 VSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTT 135
DL W I + ++ + L D E ++D +W
Sbjct: 174 -------------DLVSW-NVMITGYAKRGEMESARKLFD--------EVPKRDVVTWNA 211
Query: 136 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
MI G + G+ +AL+MF +M PDEV + +LSACT
Sbjct: 212 MIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACT 252
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 10/154 (6%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
++ V+ A++ Y G + A + F M E+D W +++ G +++ LF
Sbjct: 273 RDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFT 332
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM+ I DE T V +L A ++ ++ G ++ D+ ++ +I ++D+
Sbjct: 333 EMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRA 392
Query: 121 A---------DVEKAQKDKFSWTTMIVGLAISGN 145
D K + + W T++ I GN
Sbjct: 393 GLLNEAFDFIDTMKIEPNAIVWRTLLGACRIHGN 426
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 127 QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+ D F W TMI G A S + A+ ++SQM ++PD+ + VL ACT
Sbjct: 40 EPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACT 89
>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Cucumis sativus]
gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Cucumis sativus]
Length = 724
Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 106/183 (57%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ D + W +++ Y G ++ AR FD+M ERD V WT MI YL+ R E LF+
Sbjct: 283 DSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRH 342
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ SNIM ++FT +L A A+L A DLG+ I Y+ + + A +AL+ MY C D
Sbjct: 343 LMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGD 402
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+E A Q D FSWT+++VG A G DKAL F +L++ KPD +A++GVLSA
Sbjct: 403 IENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSA 462
Query: 175 CTH 177
C H
Sbjct: 463 CAH 465
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 104/185 (56%), Gaps = 9/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++D+ SW ++S Y+ G + AR FD+MP RD WTA+I G ++ NR EAL L+
Sbjct: 179 MVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELY 238
Query: 61 QEMQTSNI-MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+ MQ + ++ TI S L A A + +L +G+ I +I + + +D +L+DMY
Sbjct: 239 RLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGK 298
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C +E+A ++D SWTTMI +G ++ +F ++ ++I P++ + GV
Sbjct: 299 CGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGV 358
Query: 172 LSACT 176
L+AC
Sbjct: 359 LNACA 363
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 10/146 (6%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+A+V Y G ++ A+ F+ +P+ D WT+++ GY + + +AL F+ + S
Sbjct: 391 SALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTK 450
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ- 127
D + +L+A A+ +D G E+ + +K+ + I +ID+ +A+
Sbjct: 451 PDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAES 510
Query: 128 --------KDKFSWTTMIVGLAISGN 145
DK+ W ++ G I GN
Sbjct: 511 IINEMPIKPDKYIWAALLGGCRIHGN 536
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 18/152 (11%)
Query: 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIK 95
D L+ ID +R REA+ L ++ +++L RAL G+ +
Sbjct: 87 DSKLFKEAIDILCGQSRLREAVQLLYRIEKPYAS----IYLTLLKFCLKQRALKEGKQVH 142
Query: 96 TYIDKNKVKNDIFAGNALIDMYCICA---DVEKA-----QKDKFSWTTMIVGLAISGNGD 147
+I K ++ N L+DMY C D EK +D SW MI G GN +
Sbjct: 143 AHI-KTSGSIGLYISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFE 201
Query: 148 KALDMFSQMLRASIKPDEVAYVGVLSACT-HN 178
KA ++F +M D ++ ++S C HN
Sbjct: 202 KARNLFDKMPNR----DNFSWTAIISGCVQHN 229
>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 742
Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats.
Identities = 74/179 (41%), Positives = 108/179 (60%), Gaps = 8/179 (4%)
Query: 8 SWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN 67
SW A++ Y G VD+AR FDQM +RD V + ++I GY+ R REAL LF +M+ +
Sbjct: 306 SWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHD 365
Query: 68 IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127
+ D FT+VS+LTA A+L AL G + I++ V+ DI+ G AL+DMY C VE+A
Sbjct: 366 LRADNFTMVSLLTACASLGALPQGRALHACIEQRLVEVDIYLGTALLDMYLKCGRVEEAS 425
Query: 128 --------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+D +W+ MI GLA +G G AL+ F M +P+ V Y+ +L+AC+H+
Sbjct: 426 LVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYIAILTACSHS 484
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 53/165 (32%), Positives = 78/165 (47%), Gaps = 15/165 (9%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD ++WT ++S G +D A P R+ + WT +I GY R R EA+ F M
Sbjct: 169 KDAVAWTTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSM 228
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGN---ALIDMYCIC 120
+ I DE T++ +L+A A L+ L G + + + K + +G ALIDMY C
Sbjct: 229 LSDGIEPDEVTVIGLLSACAQLKDLVFGRSLHKLVGE---KGMLMSGKLVVALIDMYAKC 285
Query: 121 ADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
D+ +A + SW MI G G+ D A +F QM
Sbjct: 286 GDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQM 330
Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 25/171 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ TA++ Y+ G+V+ A F M RD W+AMI G + AL F M+
Sbjct: 404 DIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMK 463
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ T ++ILTA ++ LD G + Y ++ ++ ++I LI+ Y
Sbjct: 464 VDGFQPNSVTYIAILTACSHSCLLDEG---RLYFEEMRLLHNI---RPLIEHY------- 510
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
MI L SG D+A+D+ M ++P+ V + +LSAC
Sbjct: 511 ---------GCMIDLLGRSGLLDEAMDLVRTM---PMQPNAVIWASILSAC 549
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/166 (23%), Positives = 61/166 (36%), Gaps = 62/166 (37%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
I+ Y+ G AR+ FD +P +D V WT
Sbjct: 146 IIHMYVELGLAGDARRAFDDIPVKDAVAWT------------------------------ 175
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKF 131
++++ A L LD D +C+ ++
Sbjct: 176 -----TVISGLAKLGLLD-------------------------DAWCLLR--HSPARNVI 203
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
SWT +I G + +G +A+D F+ ML I+PDEV +G+LSAC
Sbjct: 204 SWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQ 249
>gi|356514477|ref|XP_003525932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 526
Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 108/182 (59%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KDV+ TA+V Y G V AR+ FD+MPER+ V W+AM+ Y RV+ F+E L LF EM
Sbjct: 174 KDVVLGTAMVDGYGKMGNVKSAREVFDKMPERNAVSWSAMMAAYSRVSDFKEVLALFTEM 233
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
Q +E +V++LTA A+L AL G W+ +Y + ++++ AL+DMY C V
Sbjct: 234 QNEGTEPNESILVTVLTACAHLGALTQGLWVHSYARRFHLESNPILATALVDMYSKCGCV 293
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E A KD +W MI G A++G+ K+L +F QM + KP+E +V VL+AC
Sbjct: 294 ESALSVFDCIVDKDAGAWNAMISGEALNGDAGKSLQLFRQMAASRTKPNETTFVAVLTAC 353
Query: 176 TH 177
TH
Sbjct: 354 TH 355
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G V+ A FD + ++D W AMI G ++L LF++M S
Sbjct: 281 TALVDMYSKCGCVESALSVFDCIVDKDAGAWNAMISGEALNGDAGKSLQLFRQMAASRTK 340
Query: 70 GDEFTIVSILTARANLRALDLGEWI 94
+E T V++LTA + + + G W+
Sbjct: 341 PNETTFVAVLTACTHAKMVQQGLWL 365
>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 616
Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
+ K+V+SWT+++S Y G +++ARQ FDQMP ++ V W +MI YLR ++REAL LF
Sbjct: 251 QEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFN 310
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
+M+ S ++ DE T+VSIL A + L L +G+ I YI NK + N+LIDMY C
Sbjct: 311 KMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCG 370
Query: 122 DV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
V E K+ SW +I LA+ G G +A+ +F +M PDE+ G+LS
Sbjct: 371 PVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLS 430
Query: 174 ACTHN 178
AC+H+
Sbjct: 431 ACSHS 435
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 102/206 (49%), Gaps = 39/206 (18%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+++ Y+ G + AR+ FD + ++ V W +MI GY + ++EA LF++M+ +
Sbjct: 128 ALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWGMEP 187
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--- 127
D FT V++L+ + R LDLG ++ I+ VK DI NAL+DMY C ++ AQ
Sbjct: 188 DGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIF 247
Query: 128 -----KDKFSWTTMIVGLAISGNGD-------------------------------KALD 151
K+ SWT+MI A G+ + +ALD
Sbjct: 248 DRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALD 307
Query: 152 MFSQMLRASIKPDEVAYVGVLSACTH 177
+F++M + + PDE V +L+AC+
Sbjct: 308 LFNKMRNSRVVPDEATLVSILAACSQ 333
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 8/167 (4%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G + A++ FDQ+P+ + ++ ++I GY + +A+ LF+ M S + +EFT+ +L
Sbjct: 36 GDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVL 95
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK------DK--F 131
A A + K + + +F NALI +Y +C + A+K DK
Sbjct: 96 KACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLV 155
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
SW +MI G A GN +A +F +M ++PD +V +LS C+ +
Sbjct: 156 SWNSMIGGYAHMGNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQS 202
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 25/170 (14%)
Query: 6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT 65
V + +++ Y G V A F +MP ++ V W +I EA+ LF+EMQ
Sbjct: 356 VTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQA 415
Query: 66 SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK 125
+ DE T+ +L+A ++ +D+G + Y D+ V +Y + ++E
Sbjct: 416 DGTLPDEITLTGLLSACSHSGLVDMGLY---YFDRMGV------------IYRVPREIEH 460
Query: 126 AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ L G +A+++ +M +KPD V + +L AC
Sbjct: 461 -------YACMVDLLGRGGLLGEAIELIGRM---PMKPDVVVWGALLGAC 500
>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats.
Identities = 71/180 (39%), Positives = 112/180 (62%), Gaps = 8/180 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+ TA++ G VD AR+ FD MP+RD+V W AM+ GY+RV R REAL LF EMQ
Sbjct: 189 DVVCVTAMLGALSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQ 248
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ + E T+VS+LTA A + AL+ G W+ +Y+ ++ + G AL+DMY C V
Sbjct: 249 KAGVAVSEVTLVSVLTACAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCGVVT 308
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+ +++ ++WT+ + GLA++G G++ L++F +M A ++P+ V +V VL C+
Sbjct: 309 MSMEVFETMRERNIYTWTSALSGLAMNGMGEECLELFKRMESAGMEPNGVTFVAVLRGCS 368
>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 624
Score = 148 bits (374), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 113/186 (60%), Gaps = 10/186 (5%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++D+ SW ++ Y+ G++ A++ FD+M ERD V WT +I GY++V F+EAL LF E
Sbjct: 180 DQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHE 239
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M + +EFT+ S L A ANL ALD G WI YIDK+++K + +L+DMY C +
Sbjct: 240 MLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGE 299
Query: 123 VEKAQK---DKF-------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ A K D++ W MI G A+ G +A+D+F QM + P++V +V +L
Sbjct: 300 IDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALL 359
Query: 173 SACTHN 178
+AC+H
Sbjct: 360 NACSHG 365
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 83/198 (41%), Gaps = 41/198 (20%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRV-NRFREALTLFQEM-QTSNIMGDEFTIVS 77
G + A Q FDQ+P+ D ++ MI + + ++ +F M + S + + +T V
Sbjct: 63 GSLSYAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVF 122
Query: 78 ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA----------- 126
+ A N + GE I+ + K +++++F NA+I MY V++A
Sbjct: 123 VFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQD 182
Query: 127 ----------------------------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158
++D SWTT+I G G +ALD+F +ML+
Sbjct: 183 LYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQ 242
Query: 159 ASIKPDEVAYVGVLSACT 176
P+E L+AC
Sbjct: 243 TGPPPNEFTLASALAACA 260
Score = 43.5 bits (101), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 65/130 (50%), Gaps = 11/130 (8%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVL------WTAMIDGYLRVNRFREALTLFQEM 63
+++ Y G++D A + F +Y L W AMI GY + +EA+ LF++M
Sbjct: 288 ASLLDMYAKCGEIDFAAKVFHD----EYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQM 343
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGE-WIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ + ++ T V++L A ++ + ++ G + K+ ++ +I ++D+
Sbjct: 344 KVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGL 403
Query: 123 VEKAQKDKFS 132
+++A++ F+
Sbjct: 404 LKEAEETVFN 413
>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 148 bits (374), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D +SW ++S ++ GQ+ AR F++M ++ WTA++ GY R+ + +AL F
Sbjct: 178 MTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFF 237
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ MQ I DE ++VS+L A L AL+LG+WI Y DK +I NALI+MY C
Sbjct: 238 RRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKC 297
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+++ ++D SW+TMIVGLA G +A+++F +M +A I+P + +VG+L
Sbjct: 298 GSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLL 357
Query: 173 SACTH 177
+AC H
Sbjct: 358 TACAH 362
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 82/172 (47%), Gaps = 25/172 (14%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+++ A++ Y G +D R+ FDQM ERD + W+ MI G R REA+ LFQEM
Sbjct: 282 RNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEM 341
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
Q + I T V +LTA A+ L+ G Y + K +I G V
Sbjct: 342 QKAKIEPSIITFVGLLTACAHAGLLNEG---LRYFESMKRDYNIEPG------------V 386
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E + ++ L +SG D+AL++ +M R KPD + +LS+C
Sbjct: 387 EH-------YGCLVNLLGLSGRLDQALELVKKMPR---KPDSPIWGSLLSSC 428
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 85/201 (42%), Gaps = 44/201 (21%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-----QTSNIMGDEFT 74
G+ + A F + + + L+ AMI Y + A+T++++M + I D+FT
Sbjct: 60 GETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFT 119
Query: 75 IVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK------ 128
++ + A L DLG+ + ++ K K++ N+L++MY C ++ A +
Sbjct: 120 FPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMT 179
Query: 129 -------------------------------DK--FSWTTMIVGLAISGNGDKALDMFSQ 155
DK FSWT ++ G A G AL+ F +
Sbjct: 180 ERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRR 239
Query: 156 MLRASIKPDEVAYVGVLSACT 176
M I+PDE++ V VL C
Sbjct: 240 MQMVGIEPDEISLVSVLPDCA 260
>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 564
Score = 148 bits (374), Expect = 8e-34, Method: Composition-based stats.
Identities = 73/176 (41%), Positives = 106/176 (60%), Gaps = 8/176 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T++V+ Y ++ AR+ F++MP R+ V WTAMI G+ RV EA+ LF+EMQ + I
Sbjct: 131 TSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQ 190
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-- 127
D T+VS+++A A ALD+G W+ YI+K V D+ AL+DMY C +E+A+
Sbjct: 191 PDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQV 250
Query: 128 ------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
KD +W++MI+G A G A+D F QML + PD V ++ VLSAC H
Sbjct: 251 FVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVLSACAH 306
Score = 85.9 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 92/166 (55%), Gaps = 10/166 (6%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRF-REALTLFQEM-QTSNIMGDEFTIVS 77
G ++ AR F Q+P + W ++I GY +++ +E + LF+++ +T + + FT+
Sbjct: 38 GNINYARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAF 97
Query: 78 ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------D 129
+L A A + A G + +++ K+ + +F +L++ Y C ++ A+K +
Sbjct: 98 VLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRN 157
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+WT MI G A G D+A+++F +M +A I+PD + V V+SAC
Sbjct: 158 LVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSAC 203
>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Glycine max]
Length = 622
Score = 148 bits (373), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 110/181 (60%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+SWT +++ Y G AR+ FD+MPER+ V W+ MI GY R N F +A+ F+ +Q
Sbjct: 182 DVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQ 241
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
++ +E +V ++++ A+L AL +GE Y+ +NK+ ++ G A++DMY C +VE
Sbjct: 242 AEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVE 301
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
KA +KD WT +I GLA+ G +KAL FS+M + P ++ + VL+AC+
Sbjct: 302 KAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACS 361
Query: 177 H 177
H
Sbjct: 362 H 362
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 4/132 (3%)
Query: 1 MKNK---DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREAL 57
M+NK ++I TA+V Y G V+ A F+Q+PE+D + WTA+I G +AL
Sbjct: 276 MRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKAL 335
Query: 58 TLFQEMQTSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDM 116
F EM + + T ++LTA ++ ++ G E ++ + V+ + ++D+
Sbjct: 336 WYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDL 395
Query: 117 YCICADVEKAQK 128
+ KA+K
Sbjct: 396 LGRAGKLRKAEK 407
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 8/135 (5%)
Query: 30 DQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALD 89
Q+ + ++ A+I G + + + ++ D T ++ A A L
Sbjct: 75 SQIQNPNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAP 134
Query: 90 LGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTMIVGLA 141
+G K+ + D + N+L+ MY D+ A+ D SWT MI G
Sbjct: 135 MGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYH 194
Query: 142 ISGNGDKALDMFSQM 156
G+ A ++F +M
Sbjct: 195 RCGDAKSARELFDRM 209
>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
Length = 748
Score = 148 bits (373), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 120/182 (65%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+D +S+TA+++ Y RG +D AR+ F+++P RD V W AMI GY + RF EAL FQEM
Sbjct: 196 RDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEM 255
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ +N+ +E T+V++L+A A +L+LG W++++I+ + + +++ NALIDMY C D+
Sbjct: 256 KRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDL 315
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+KA +KD SW MI G + + +AL +F +M +++++P++V +V +L AC
Sbjct: 316 DKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPAC 375
Query: 176 TH 177
+
Sbjct: 376 AY 377
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 107/176 (60%), Gaps = 9/176 (5%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G +D AR F+ + E+D + W MI GY +N ++EAL LF++MQ SN+
Sbjct: 304 ALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEP 363
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVK-NDIFAGNALIDMYCICADVEKAQ-- 127
++ T VSIL A A L ALDLG+WI YIDK + + +LIDMY C ++E A+
Sbjct: 364 NDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQV 423
Query: 128 ------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
K SW MI GLA+ G+ + AL++F QM +PD++ +VGVLSAC+H
Sbjct: 424 FAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSH 479
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 80/198 (40%), Gaps = 39/198 (19%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G + A F+ + + + +W MI G + A+ + M + + +T +L
Sbjct: 80 GNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLL 139
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ------------ 127
+ A + A G+ I ++ K +++D F +LI+MY ++ A+
Sbjct: 140 KSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAV 199
Query: 128 ---------------------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS 160
+D SW MI G A SG ++AL F +M RA+
Sbjct: 200 SFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRAN 259
Query: 161 IKPDEVAYVGVLSACTHN 178
+ P+E V VLSAC +
Sbjct: 260 VAPNESTMVTVLSACAQS 277
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 25/167 (14%)
Query: 9 WTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI 68
WT+++ Y G ++ A+Q F M + W AMI G AL LF++M+
Sbjct: 404 WTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGF 463
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
D+ T V +L+A ++ ++LG F+ ++++ Y I ++
Sbjct: 464 EPDDITFVGVLSACSHAGLVELGR-------------QCFS--SMVEDYDISPKLQH--- 505
Query: 129 DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ MI L +G D+A + M +KPD + +L AC
Sbjct: 506 ----YGCMIDLLGRAGLFDEAEALMKNM---EMKPDGAIWGSLLGAC 545
Score = 39.7 bits (91), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 16/113 (14%)
Query: 73 FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM----------YCICAD 122
T++S + NL+ I + I K + N FA + LI+ Y +
Sbjct: 36 LTLLSTCKSFQNLKQ------IHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLF 89
Query: 123 VEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
Q ++F W TMI G ++S + A+D + +ML ++P+ + +L +C
Sbjct: 90 ESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSC 142
>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
Length = 539
Score = 148 bits (373), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 113/186 (60%), Gaps = 10/186 (5%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++D+ SW ++ Y+ G++ A++ FD+M ERD V WT +I GY++V F+EAL LF E
Sbjct: 95 DQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHE 154
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M + +EFT+ S L A ANL ALD G WI YIDK+++K + +L+DMY C +
Sbjct: 155 MLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGE 214
Query: 123 VEKAQK---DKF-------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ A K D++ W MI G A+ G +A+D+F QM + P++V +V +L
Sbjct: 215 IDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALL 274
Query: 173 SACTHN 178
+AC+H
Sbjct: 275 NACSHG 280
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 40/161 (24%)
Query: 56 ALTLFQEM-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALI 114
++ +F M + S + + +T V + A N + GE I+ + K +++++F NA+I
Sbjct: 15 SMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMI 74
Query: 115 DMYCICADVEKA---------------------------------------QKDKFSWTT 135
MY V++A ++D SWTT
Sbjct: 75 RMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTT 134
Query: 136 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+I G G +ALD+F +ML+ P+E L+AC
Sbjct: 135 IIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACA 175
Score = 43.5 bits (101), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 65/130 (50%), Gaps = 11/130 (8%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVL------WTAMIDGYLRVNRFREALTLFQEM 63
+++ Y G++D A + F +Y L W AMI GY + +EA+ LF++M
Sbjct: 203 ASLLDMYAKCGEIDFAAKVFHD----EYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQM 258
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGE-WIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ + ++ T V++L A ++ + ++ G + K+ ++ +I ++D+
Sbjct: 259 KVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGL 318
Query: 123 VEKAQKDKFS 132
+++A++ F+
Sbjct: 319 LKEAEETVFN 328
>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like, partial [Brachypodium distachyon]
Length = 745
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 113/177 (63%), Gaps = 8/177 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G++D AR+ FD+M RD V W+AMI GY + +R REAL +F EMQ + +
Sbjct: 311 TALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVN 370
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK- 128
++ T+VS+L+A A L AL+ G+W+ +YI + + + G AL+D Y C ++ A K
Sbjct: 371 PNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKA 430
Query: 129 -------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+ ++WT +I G+A +G +AL++FS ML A+I+P +V ++GVL AC+H
Sbjct: 431 FESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHG 487
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 89/173 (51%), Gaps = 8/173 (4%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y + G V A F + + + W AMI GY++ ++E + +F+ M
Sbjct: 211 SLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPF 270
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--- 127
DE T++S+ TA L +LG+WI Y ++ + AL+DMY C +++KA+
Sbjct: 271 DEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLF 330
Query: 128 -----KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+D +W+ MI G S +AL +F++M + P++V V VLSAC
Sbjct: 331 DRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSAC 383
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 9/152 (5%)
Query: 33 PERDYVLWTAMIDGYLRVNRFREALTLFQEM-QTSNIMGDEFTIVSILTARANLRALDLG 91
P R + +I +LR +AL LF EM + + D+ T+ + + + + + L +G
Sbjct: 131 PPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVG 190
Query: 92 EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAIS 143
++ Y K D F N+LI MY C DV A K +W MI G +
Sbjct: 191 RGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKN 250
Query: 144 GNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
G+ + ++MF ML DEV + V +AC
Sbjct: 251 GDWKEVVEMFKGMLEVRAPFDEVTLLSVATAC 282
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 76/171 (44%), Gaps = 25/171 (14%)
Query: 6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT 65
VI TA+V Y G + A + F+ MP R+ WTA+I G R REAL LF M
Sbjct: 408 VILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLE 467
Query: 66 SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK 125
+NI + T + +L A ++ ++ G T + ++ Y IC +E
Sbjct: 468 ANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQD---------------YGICPRIEH 512
Query: 126 AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+ M+ L +G D+A M I+P+ V + +LSACT
Sbjct: 513 -------YGCMVDLLGRAGLIDEAYQFIRNM---PIEPNAVVWRALLSACT 553
>gi|347954502|gb|AEP33751.1| chloroplast biogenesis 19, partial [Lepidium virginicum]
Length = 485
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 110/185 (59%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+++K+ ++W ++ Y+ GQVD A FD+MP+RD + WTAMI G+++ EAL F
Sbjct: 120 IEDKNSVTWNTMIDGYMRNGQVDNAVDVFDKMPDRDLISWTAMITGFVKKGFHEEALAWF 179
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ S + D I+S + A NL AL G W+ Y+ +N++ N+LID+YC C
Sbjct: 180 REMQISGVNPDYVAIISAVAACTNLGALSFGLWVHRYVLSQDFRNNVRVSNSLIDLYCRC 239
Query: 121 ADVEKAQK--DKF------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VE A++ DK SW ++IVG A +GN +++L F +M R PD V + G L
Sbjct: 240 GCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNANESLVYFRKMQREGFTPDGVTFTGAL 299
Query: 173 SACTH 177
+AC+H
Sbjct: 300 TACSH 304
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 27/169 (15%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y G V+ ARQ FD+M +R V W ++I G+ E+L F++MQ
Sbjct: 231 SLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNANESLVYFRKMQREGFTP 290
Query: 71 DEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
D T LTA +++ ++ G ++ + ++ I L+D+Y +E
Sbjct: 291 DGVTFTGALTACSHVGLVEEGFQYFQMMKHDYRISPRIEHYGCLVDLYSRAGRLE----- 345
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
D F + +KP+EV +L+AC ++
Sbjct: 346 ---------------------DAFIVVESMPMKPNEVVIGSLLAACRNH 373
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
SWT+ I L+ G +A+ FS M A I+P+ + ++ +LSAC
Sbjct: 23 SWTSRITLLSRDGRLAEAVREFSDMRLAGIEPNHITFIALLSAC 66
>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
Length = 894
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 117/185 (63%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK+K+ ++ A++ Y G + A++ FDQ+P +D + W++MI Y + + F ++L LF
Sbjct: 572 MKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELF 631
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++MQ + + D I S+L+A A+L ALDLG+WI Y+ +N +K D N+LIDM+ C
Sbjct: 632 RQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKTDTIMENSLIDMFAKC 691
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+++A +KD SW ++I+GLA +G D+AL++F ML +P+EV ++GVL
Sbjct: 692 GCMQEALQVFTEMEEKDTLSWNSIILGLANNGFEDEALNIFYSMLTEGPRPNEVTFLGVL 751
Query: 173 SACTH 177
AC +
Sbjct: 752 IACAN 756
Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 112/187 (59%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+SW +++ + G+++ AR FDQMP R+ V WT +IDGY R + EA+ LF
Sbjct: 1 MPMKNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALF 60
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M I E T+++++ A +NL + +GE + Y K + +D GN+LID+Y
Sbjct: 61 RHMMAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKI 120
Query: 121 ADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
V+ + +++ SWT++I G A+ G +AL++F++M RA I+P+ + ++ V
Sbjct: 121 GSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSV 180
Query: 172 LSACTHN 178
++AC+H
Sbjct: 181 INACSHG 187
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 102/212 (48%), Gaps = 39/212 (18%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ +++ Y G + AR FD+M +D V W ++I GY + NRF+E L LF+ MQ
Sbjct: 444 DIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQRNRFKEVLALFELMQ 503
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ D+ T+V +++A +L + + + YI++N ++ D++ GN LID YC ++
Sbjct: 504 AEEVQADKVTMVKVISACTHLGDWSMADCMVRYIERNHIEVDVYLGNTLIDYYCRIGQLQ 563
Query: 125 KAQ---------------------------------------KDKFSWTTMIVGLAISGN 145
A+ KD SW++MI + + +
Sbjct: 564 SAEKVFSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASH 623
Query: 146 GDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+L++F QM RA +KPD V VLSAC H
Sbjct: 624 FSDSLELFRQMQRAKVKPDAVVIASVLSACAH 655
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 81/174 (46%), Gaps = 8/174 (4%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
I S + + + A + F+Q+ LW ++ G + + ++A+ +++ Q + D
Sbjct: 350 IRSYALQQSDLVFAHKVFEQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPD 409
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV-------- 123
T +L A A A GE + +++ K DIF N+LI +Y C D+
Sbjct: 410 NMTFPFVLKACAKTYAPKEGEQMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFD 469
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
E KD SW ++I G + + L +F M ++ D+V V V+SACTH
Sbjct: 470 EMLVKDVVSWNSLIGGYSQRNRFKEVLALFELMQAEEVQADKVTMVKVISACTH 523
Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 28/176 (15%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFR-EALTLFQEM 63
D I +++ + G + A Q F +M E+D + W ++I G L N F EAL +F M
Sbjct: 677 DTIMENSLIDMFAKCGCMQEALQVFTEMEEKDTLSWNSIILG-LANNGFEDEALNIFYSM 735
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
T +E T + +L A AN R + G +D + V
Sbjct: 736 LTEGPRPNEVTFLGVLIACANKRLVQEG----------------------LDHFERMKTV 773
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC-THN 178
+ + ++ L+ +G +KA + ++M + PD V + +L AC TH
Sbjct: 774 HNLEPQMKHYGCVVGILSRAGQLEKAKNFINEM---PLAPDPVVWRILLGACKTHG 826
>gi|255551991|ref|XP_002517040.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543675|gb|EEF45203.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 456
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 115/181 (63%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV ++++ Y G D A + F++MP ++ V W+A+I GY++ NRF++AL LFQ+M
Sbjct: 231 DVYIGSSLLDMYCKCGYCDDACKLFNEMPVKNIVCWSALIAGYVQCNRFKDALLLFQDML 290
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+++ ++ T+ S+LTA A L ALD G W+ YID+N ++ + G ALIDMY C +
Sbjct: 291 LTDVRPNQCTLSSVLTASAQLGALDRGRWVHDYIDRNSLEMNSILGTALIDMYAKCGCIS 350
Query: 125 KAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+A K+ ++WT MI GLA+ G+ +L++FS M+ ++P+ V +VG+L+AC
Sbjct: 351 EAYVVFNKLHIKNVYTWTAMINGLAMHGDALSSLNLFSHMISNGVQPNGVTFVGILNACA 410
Query: 177 H 177
H
Sbjct: 411 H 411
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 91/173 (52%), Gaps = 9/173 (5%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
++++ + N G V A Q D+ P R+ V WTAMIDGY+R + + F++M++ +
Sbjct: 135 SLITAFSNCGCVQFAHQVLDESPHRNLVTWTAMIDGYVRNGFPVDGIKCFKKMRSMGVKI 194
Query: 71 DEFTIVSILTARANLRALDLGEWIKT-YIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
DE T+VS+L A + G W+ Y++ +VK D++ G++L+DMYC C + A
Sbjct: 195 DEITVVSVLCAAGMAGDVWFGRWVHGFYVESGRVKWDVYIGSSLLDMYCKCGYCDDACKL 254
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
K+ W+ +I G AL +F ML ++P++ VL+A
Sbjct: 255 FNEMPVKNIVCWSALIAGYVQCNRFKDALLLFQDMLLTDVRPNQCTLSSVLTA 307
Score = 39.7 bits (91), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ Y G + A F+++ ++ WTAMI+G +L LF M ++ +
Sbjct: 337 TALIDMYAKCGCISEAYVVFNKLHIKNVYTWTAMINGLAMHGDALSSLNLFSHMISNGVQ 396
Query: 70 GDEFTIVSILTARANLRALDLGE 92
+ T V IL A A+ + +G
Sbjct: 397 PNGVTFVGILNACAHGGLVHIGR 419
>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 663
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 76/187 (40%), Positives = 113/187 (60%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DVI+WT++V Y RG++ AR+ FD MP R+ V W M+ GY+ + EAL F
Sbjct: 218 MPQRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCF 277
Query: 61 QEMQTSN-IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+M + + +E +VSIL+A A+L ALD G+WI YIDKN++ ALIDMY
Sbjct: 278 NDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAK 337
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C ++ A ++D +WT+MI GL++ G G + L FS+ML KPD++ +GV
Sbjct: 338 CGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGV 397
Query: 172 LSACTHN 178
L+ C+H+
Sbjct: 398 LNGCSHS 404
Score = 75.5 bits (184), Expect = 8e-12, Method: Composition-based stats.
Identities = 56/210 (26%), Positives = 91/210 (43%), Gaps = 44/210 (20%)
Query: 12 IVSRYINRGQVDIARQCFDQMPE-RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN--I 68
++ YI + AR FDQ P ++W MI Y + +E+L LF +M
Sbjct: 93 LIHSYIGCRNLSFARIVFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPT 152
Query: 69 MGDEFTIVSILTARANLRAL-DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV---- 123
D++T + TA + L GE + + K+ ++DIF GN+L++MY I + +
Sbjct: 153 SADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAK 212
Query: 124 ----EKAQKDKFSWTTMIVGLAISGN-------------------------------GDK 148
E Q+D +WT+++ G A+ G ++
Sbjct: 213 RVFDEMPQRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNE 272
Query: 149 ALDMFSQML-RASIKPDEVAYVGVLSACTH 177
AL F+ ML +KP+E V +LSAC H
Sbjct: 273 ALQCFNDMLCHDEVKPNEAVLVSILSACAH 302
>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 619
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 115/196 (58%), Gaps = 19/196 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++DV+SW ++S Y G+V+ + F++MP R+ W +I GY+R F+EAL F
Sbjct: 245 MPDRDVMSWNTVLSGYATNGEVESFVKLFEEMPVRNVYSWNGLIGGYVRNGLFKEALECF 304
Query: 61 QEM-----------QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFA 109
+ M ++ +++T+V++LTA + L L++G+W+ Y + K ++F
Sbjct: 305 KRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMGKWVHVYAESIGYKGNLFV 364
Query: 110 GNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI 161
GNALIDMY C +EKA KD +W T+I GLA+ G+ AL +F +M RA
Sbjct: 365 GNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINGLAMHGHVADALSLFERMKRAGE 424
Query: 162 KPDEVAYVGVLSACTH 177
+PD V +VG+LSACTH
Sbjct: 425 RPDGVTFVGILSACTH 440
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 42/187 (22%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++K+V +WTAIV+ ++ + AR+ FD P+RD VLW ++ GY+ + A LF
Sbjct: 183 MRDKNVFAWTAIVAAHVACRDMVSARRLFDLAPQRDVVLWNVVVSGYIELGDMVAARELF 242
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M ++M W N V + +A N ++ +
Sbjct: 243 DRMPDRDVM----------------------SW-------NTVLSG-YATNGEVESFVKL 272
Query: 121 ADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQML-----------RASIKPDEVAYV 169
+ E ++ +SW +I G +G +AL+ F +ML + P++ V
Sbjct: 273 FE-EMPVRNVYSWNGLIGGYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVV 331
Query: 170 GVLSACT 176
VL+AC+
Sbjct: 332 AVLTACS 338
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 10/128 (7%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G + AR+ FD+ + + W AM GY + N + + LF M + + FT ++
Sbjct: 68 GGIRRARRVFDKTAQPNGATWNAMFRGYAQANCHLDVVVLFARMHRAGASPNCFTFPMVV 127
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV----------EKAQKD 129
+ A A GE + + K K++ F G ALI MY + V E K+
Sbjct: 128 KSCATANAAKEGEEVHCVVAKRGFKSNTFVGCALIHMYSLRGGVFVADAYKVFAEMRDKN 187
Query: 130 KFSWTTMI 137
F+WT ++
Sbjct: 188 VFAWTAIV 195
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 120/182 (65%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+D +S+TA+++ Y RG +D AR+ F+++P RD V W AMI GY + RF EAL FQEM
Sbjct: 196 RDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEM 255
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ +N+ +E T+V++L+A A +L+LG W++++I+ + + +++ NALIDMY C D+
Sbjct: 256 KRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDL 315
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+KA +KD SW MI G + + +AL +F +M +++++P++V +V +L AC
Sbjct: 316 DKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPAC 375
Query: 176 TH 177
+
Sbjct: 376 AY 377
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 107/176 (60%), Gaps = 9/176 (5%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G +D AR F+ + E+D + W MI GY +N ++EAL LF++MQ SN+
Sbjct: 304 ALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEP 363
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVK-NDIFAGNALIDMYCICADVEKAQ-- 127
++ T VSIL A A L ALDLG+WI YIDK + + +LIDMY C ++E A+
Sbjct: 364 NDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQV 423
Query: 128 ------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
K SW MI GLA+ G+ + AL++F QM +PD++ +VGVLSAC+H
Sbjct: 424 FAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSH 479
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 80/198 (40%), Gaps = 39/198 (19%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G + A F+ + + + +W MI G + A+ + M + + +T +L
Sbjct: 80 GNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLL 139
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ------------ 127
+ A + A G+ I ++ K +++D F +LI+MY ++ A+
Sbjct: 140 KSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAV 199
Query: 128 ---------------------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS 160
+D SW MI G A SG ++AL F +M RA+
Sbjct: 200 SFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRAN 259
Query: 161 IKPDEVAYVGVLSACTHN 178
+ P+E V VLSAC +
Sbjct: 260 VAPNESTMVTVLSACAQS 277
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%)
Query: 9 WTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI 68
WT+++ Y G ++ A+Q F M + W AMI G AL LF++M+
Sbjct: 404 WTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGF 463
Query: 69 MGDEFTIVSILTARANLRALDLG 91
D+ T V +L+A ++ ++LG
Sbjct: 464 EPDDITFVGVLSACSHAGLVELG 486
Score = 39.3 bits (90), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 16/114 (14%)
Query: 73 FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM----------YCICAD 122
T++S + NL+ I + I K + N FA + LI+ Y +
Sbjct: 36 LTLLSTCKSFQNLKQ------IHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLF 89
Query: 123 VEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
Q ++F W TMI G ++S + A+D + +ML ++P+ + +L +C
Sbjct: 90 ESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCA 143
>gi|449521058|ref|XP_004167548.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 376
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 106/177 (59%), Gaps = 8/177 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T++V+ Y ++ AR+ F++MP R+ V WTAMI G+ RV EA+ LF+EMQ + I
Sbjct: 131 TSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQ 190
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-- 127
D T+VS+++A A ALD+G W+ YI+K V D+ AL+DMY C +E+A+
Sbjct: 191 PDAMTLVSVVSACAVAGALDIGCWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQV 250
Query: 128 ------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
KD +W++MI+G A G A+D F QML + PD V ++ VLSAC H
Sbjct: 251 FVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVLSACAHG 307
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 92/166 (55%), Gaps = 10/166 (6%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRF-REALTLFQEM-QTSNIMGDEFTIVS 77
G ++ AR F Q+P + W ++I GY +++ +E + LF+++ +T + + FT+
Sbjct: 38 GNINYARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAF 97
Query: 78 ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------D 129
+L A A + A G + +++ K+ + +F +L++ Y C ++ A+K +
Sbjct: 98 VLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRN 157
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+WT MI G A G D+A+++F +M +A I+PD + V V+SAC
Sbjct: 158 LVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSAC 203
>gi|125528144|gb|EAY76258.1| hypothetical protein OsI_04193 [Oryza sativa Indica Group]
Length = 565
Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats.
Identities = 74/178 (41%), Positives = 111/178 (62%), Gaps = 9/178 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQM-PERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI 68
T +++ Y +V +AR FD M +++ W+AMI GY RV EAL LF+EMQ +++
Sbjct: 167 TGLLNLYAKCEEVALARTVFDGMVGDKNLAAWSAMIGGYSRVGMVNEALGLFREMQAADV 226
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK--- 125
DE T+VS+++A A ALDLG W+ +ID+ + D+ ALIDMY C +E+
Sbjct: 227 NPDEVTMVSVISACAKAGALDLGRWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKG 286
Query: 126 -----AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
A++D +W+ MIVGLAI G + AL +FS+ML ++P+ V ++GVLSAC H+
Sbjct: 287 VFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLELKVRPNNVTFIGVLSACAHS 344
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 42/164 (25%), Positives = 79/164 (48%), Gaps = 13/164 (7%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLR---VNRFREALTLFQEM-QTSNIMGDEFTIVSILT 80
AR FDQ+PE + ++I V + + +++ M + + + + FT+ L
Sbjct: 77 ARNLFDQIPEPTAFCYNSLIRALSSAAGVAPAADTVLVYRRMLRAGSPLPNSFTLAFALK 136
Query: 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ---------KDKF 131
A + + AL G + + + ++ + L+++Y C +V A+ K+
Sbjct: 137 ACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFDGMVGDKNLA 196
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+W+ MI G + G ++AL +F +M A + PDEV V V+SAC
Sbjct: 197 AWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISAC 240
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 7/136 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ Y G ++ A+ FD M ERD W+AMI G AL LF M +
Sbjct: 269 TALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLELKVR 328
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
+ T + +L+A A+ ++ G + + + +K + ++D++C + +++A
Sbjct: 329 PNNVTFIGVLSACAHSGLVNEGRRYWSTMQELGIKPSMENYGCMVDLFCRSSLLDEAY-- 386
Query: 130 KFSWTTMIVGLAISGN 145
+ + G+AI N
Sbjct: 387 -----SFVTGMAIPPN 397
>gi|115440653|ref|NP_001044606.1| Os01g0814300 [Oryza sativa Japonica Group]
gi|20161481|dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|56785052|dbj|BAD82691.1| PPR repeat containing protein-like [Oryza sativa Japonica Group]
gi|113534137|dbj|BAF06520.1| Os01g0814300 [Oryza sativa Japonica Group]
Length = 604
Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats.
Identities = 74/178 (41%), Positives = 111/178 (62%), Gaps = 9/178 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQM-PERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI 68
T +++ Y +V +AR FD M +++ W+AMI GY RV EAL LF+EMQ +++
Sbjct: 170 TGLLNLYAKCEEVALARTVFDGMVGDKNLAAWSAMIGGYSRVGMVNEALGLFREMQAADV 229
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK--- 125
DE T+VS+++A A ALDLG W+ +ID+ + D+ ALIDMY C +E+
Sbjct: 230 NPDEVTMVSVISACAKAGALDLGRWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKG 289
Query: 126 -----AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
A++D +W+ MIVGLAI G + AL +FS+ML ++P+ V ++GVLSAC H+
Sbjct: 290 VFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLELKVRPNNVTFIGVLSACAHS 347
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 41/164 (25%), Positives = 78/164 (47%), Gaps = 13/164 (7%)
Query: 25 ARQCFDQMPERDYVLWTAMI---DGYLRVNRFREALTLFQEM-QTSNIMGDEFTIVSILT 80
AR FDQ+PE + ++I + + +++ M + + + + FT+ L
Sbjct: 80 ARNLFDQIPEPTAFCYNSLIRALSSAAGAAPAADTVLVYRRMLRAGSPLPNSFTLAFALK 139
Query: 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ---------KDKF 131
A + + AL G + + + ++ + L+++Y C +V A+ K+
Sbjct: 140 ACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFDGMVGDKNLA 199
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+W+ MI G + G ++AL +F +M A + PDEV V V+SAC
Sbjct: 200 AWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISAC 243
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 7/136 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ Y G ++ A+ FD M ERD W+AMI G AL LF M +
Sbjct: 272 TALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLELKVR 331
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
+ T + +L+A A+ ++ G + + + +K + ++D++C + +++A
Sbjct: 332 PNNVTFIGVLSACAHSGLVNEGRRYWSTMQELGIKPSMENYGCMVDLFCRSSLLDEAY-- 389
Query: 130 KFSWTTMIVGLAISGN 145
+ + G+AI N
Sbjct: 390 -----SFVTGMAIPPN 400
>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
Length = 704
Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats.
Identities = 74/187 (39%), Positives = 117/187 (62%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ KDV SWT++V+ Y G ++ A Q F MP R+ V W+ MI Y ++N+ EA+ LF
Sbjct: 306 MEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLF 365
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWI-KTYIDKNKVKNDIFAGNALIDMYCI 119
+EM + + + T+VS+L+A A L LDLG WI + YI NK+ + GNALIDM+
Sbjct: 366 REMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAK 425
Query: 120 CADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C DV E A+++ SW TMI+ A+ G ++A+ +F Q+ +I PD++ ++G+
Sbjct: 426 CGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGL 485
Query: 172 LSACTHN 178
L++C+H+
Sbjct: 486 LASCSHS 492
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 9/167 (5%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+ V+ A+V Y N +D A + FD+MPERD V WT ++DGY R EA LF M
Sbjct: 176 ESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRM 235
Query: 64 QTSNIM-GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M + T+V+ ++A + L G + Y+ + V + NAL+DM+ C
Sbjct: 236 VVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGC 295
Query: 123 VEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI 161
V A+ KD +SWT+M+ A G+ + A +F M R ++
Sbjct: 296 VRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNV 342
Score = 43.1 bits (100), Expect = 0.045, Method: Composition-based stats.
Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 17/154 (11%)
Query: 37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDL------ 90
Y+L T M+ G+LR AL LF+ + + D T V + A A +
Sbjct: 102 YMLGT-MMRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGGTPSG 160
Query: 91 GEWIKTYIDK-NKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLA 141
GE I K V + GNAL+ Y ++ A ++D SWTT++ G A
Sbjct: 161 GEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYA 220
Query: 142 ISGNGDKALDMFSQM-LRASIKPDEVAYVGVLSA 174
+G D+A +F +M + ++P+ V V +SA
Sbjct: 221 RAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSA 254
>gi|222636196|gb|EEE66328.1| hypothetical protein OsJ_22569 [Oryza sativa Japonica Group]
Length = 1287
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/179 (41%), Positives = 106/179 (59%), Gaps = 8/179 (4%)
Query: 8 SWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN 67
SW AI+ Y G VD+AR FDQM RD + + +MI GY+ + REAL LF M+ +
Sbjct: 247 SWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHD 306
Query: 68 IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA- 126
+ D FT+VS+L+A A+L AL G + I+ V+ DI+ G AL+DMY C V +A
Sbjct: 307 LRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEAT 366
Query: 127 -------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
++D +WT MI GLA +G G L+ F QM +P+ V+Y+ VL+AC+H+
Sbjct: 367 IVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHS 425
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 80/162 (49%), Gaps = 9/162 (5%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD +SWT ++S G + AR Q P RD + WT++I Y R +R +EA+ F+ M
Sbjct: 110 KDAVSWTMVISGLAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNM 169
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ I D+ T++ +L+A + L+ L+LG + + + + ALIDMY C D
Sbjct: 170 LSEGIAPDDVTVIGVLSACSQLKDLELGCSLHLLVKEKGMSMSENLVVALIDMYAKCGDF 229
Query: 124 EKAQ---------KDKFSWTTMIVGLAISGNGDKALDMFSQM 156
A+ + SW +I G G+ D A +F QM
Sbjct: 230 GHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQM 271
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 25/171 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ TA++ Y+ G+V+ A F +M +RD WTAMI G + L F +M+
Sbjct: 345 DIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMR 404
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ + +++LTA ++ L+ G + Y D+ ++ +Y I +E
Sbjct: 405 CDGFQPNPVSYIAVLTACSHSCLLNEG---RLYFDEMRI------------LYNIHPQIE 449
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ MI L SG D+A+D+ M ++P+ V + +LSAC
Sbjct: 450 H-------YGCMIDLLGRSGLLDEAMDLVKTM---PMQPNSVIWASILSAC 490
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/157 (20%), Positives = 69/157 (43%), Gaps = 10/157 (6%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA--RANLR 86
F+++P ++I L N F AL + M + D+ T + + A +
Sbjct: 994 FNEIPSIALECCNSLITSSLGCNMFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASP 1053
Query: 87 ALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIV 138
+L + + + + K + D+ ++LI Y + + + +T +I
Sbjct: 1054 SLTSCQMLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIIS 1113
Query: 139 GLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
A G+G +A+++F QM+ + +KPD V ++ ++ C
Sbjct: 1114 ACARYGDGARAMELFDQMVSSGLKPDNVTFLCAIAGC 1150
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 128 KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+D SWT++I + + +A+D F ML I PD+V +GVLSAC+
Sbjct: 141 RDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACS 189
>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 118/182 (64%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+DV++ T ++S Y ++G V+ A F ++ +D V WTAMIDG++R AL F+ M
Sbjct: 210 EDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGM 269
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
Q N+ +EFTIV +L+A + L AL++G W+ +Y+ K +++ ++F GNALI+MY C +
Sbjct: 270 QGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSI 329
Query: 124 EKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
++AQ +D ++ TMI GL+++G +A+++F M+ ++P V +VGVL+AC
Sbjct: 330 DEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNAC 389
Query: 176 TH 177
+H
Sbjct: 390 SH 391
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 38/193 (19%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81
+D A + F + L+TA+IDG++ + +A+ L+ M +I+ D + + SIL A
Sbjct: 97 IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKA 156
Query: 82 -----------RANLRALDLG----EWIKTYI-----------DKNKV----KNDIFAGN 111
+ RAL LG ++ I D +V D+ A
Sbjct: 157 CGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAST 216
Query: 112 ALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKP 163
+I Y VE+A +KD WT MI G + ++AL+ F M +++P
Sbjct: 217 VMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRP 276
Query: 164 DEVAYVGVLSACT 176
+E V VLSAC+
Sbjct: 277 NEFTIVCVLSACS 289
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 25/165 (15%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+++ Y G +D A+ FD+M +RD + + MI G + R+A+ LF+ M +
Sbjct: 318 ALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRP 377
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDK 130
T V +L A ++ +D G I + ++ Y + +E
Sbjct: 378 TNVTFVGVLNACSHGGLVDFGFKIFHSMTRD---------------YGVEPQIEH----- 417
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ L G ++A D+ M + PD + +LSAC
Sbjct: 418 --YGCMVDLLGRVGRLEEAYDLIRTM---KMTPDHIMLGTLLSAC 457
>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 112/185 (60%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + ISW I+S ++ GQ+ AR FD+MP R V WTA+I GY R+ + +AL +F
Sbjct: 156 MHERGAISWNGIISGHVRLGQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDALDVF 215
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ + I DE +I+S+L A A L AL+ G+WI + +N + NALI+MY C
Sbjct: 216 REMQIAGIEPDEASIISVLPACAKLGALETGKWIHMFCARNGLLRRTCICNALIEMYTKC 275
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+++A +D SW+TMI GLA G +A+ +F +M + +IKP+ + +VG+L
Sbjct: 276 GCIDQACQLFDQMRGRDVISWSTMIGGLANHGKVREAIAIFERMKQTNIKPNGITFVGLL 335
Query: 173 SACTH 177
SAC H
Sbjct: 336 SACAH 340
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 48/203 (23%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDG-------YLRVNRFREALTLFQEMQTSN--IMGDE 72
+D A F ++ + + L+ AMI L ++ +++ L ++ QTS I+ DE
Sbjct: 36 MDYASFLFKEVIDPNAYLYNAMIRACTHNSMYSLTIDFYKQMLREYRNSQTSEDLILPDE 95
Query: 73 FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------- 123
FT ++ A A L +LG+ + K K+ + NALIDMY C ++
Sbjct: 96 FTFPFVVKACARLGLHNLGKQVHAQFFKFGKKSHLITENALIDMYTKCDNLLDAHNLFDE 155
Query: 124 ------------------------------EKAQKDKFSWTTMIVGLAISGNGDKALDMF 153
E + SWT +I G G+ ALD+F
Sbjct: 156 MHERGAISWNGIISGHVRLGQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDALDVF 215
Query: 154 SQMLRASIKPDEVAYVGVLSACT 176
+M A I+PDE + + VL AC
Sbjct: 216 REMQIAGIEPDEASIISVLPACA 238
>gi|297824523|ref|XP_002880144.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325983|gb|EFH56403.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 555
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 111/186 (59%), Gaps = 10/186 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +K VI+WT ++ Y N +D AR+ FD MPER+ V W MI GY + + +EA+ LF
Sbjct: 202 MTHKTVITWTTMIHGYCNSNDIDSARKLFDAMPERNLVSWNTMIGGYCQNKQPQEAIRLF 261
Query: 61 QEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
QEMQ T+++ D+ TI+S+L A ++ AL LGEW ++ + + + A++DMY
Sbjct: 262 QEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKNLDKKVKVCTAILDMYSK 321
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C ++EKA +K SW MI G A++GN ALD+F M + KPDE+ + V
Sbjct: 322 CGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNAHAALDLFLTMAKEE-KPDEITMLAV 380
Query: 172 LSACTH 177
+SAC H
Sbjct: 381 ISACNH 386
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 33/176 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPE-RDYVLWTAMIDGYLRVNRFREALTL 59
M + +SWTA++ Y+ G++D+A + FDQMP+ +D V++ AM+DG+++ A L
Sbjct: 139 MPQRSEVSWTALICGYVRFGELDLASKLFDQMPQVKDVVIYNAMMDGFVKSGDMTSARRL 198
Query: 60 FQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
F EM ++ T +++ N NDI + L D
Sbjct: 199 FDEMTHKTVI----TWTTMIHGYCN-------------------SNDIDSARKLFDAM-- 233
Query: 120 CADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGVLSA 174
+++ SW TMI G + +A+ +F +M S+ PD+V + VL A
Sbjct: 234 ------PERNLVSWNTMIGGYCQNKQPQEAIRLFQEMQATTSLDPDDVTILSVLPA 283
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 10/145 (6%)
Query: 22 VDIARQCFDQMPER-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG-DEFTIVSIL 79
+ AR+ FDQ P R D L +MI YL + ++ +++++ + D FT ++
Sbjct: 26 IGYARKLFDQRPHREDSFLCNSMIKAYLETRHYNDSFAFYRDLRKETCLAPDNFTFTTMT 85
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKF 131
+ + G + + I ++ D++ ++DMY + E Q+ +
Sbjct: 86 KSCTLSMCVYQGLQLHSQIWRSGFCADMYVSTGVVDMYAKFGKMGCARNVFDEMPQRSEV 145
Query: 132 SWTTMIVGLAISGNGDKALDMFSQM 156
SWT +I G G D A +F QM
Sbjct: 146 SWTALICGYVRFGELDLASKLFDQM 170
>gi|218198855|gb|EEC81282.1| hypothetical protein OsI_24392 [Oryza sativa Indica Group]
Length = 1349
Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats.
Identities = 74/179 (41%), Positives = 106/179 (59%), Gaps = 8/179 (4%)
Query: 8 SWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN 67
SW AI+ Y G VD+AR FDQM RD + + +MI GY+ + REAL LF M+ +
Sbjct: 309 SWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHD 368
Query: 68 IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA- 126
+ D FT+VS+L+A A+L AL G + I+ V+ DI+ G AL+DMY C V +A
Sbjct: 369 LRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEAT 428
Query: 127 -------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
++D +WT MI GLA +G G L+ F QM +P+ V+Y+ VL+AC+H+
Sbjct: 429 IVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHS 487
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 58/212 (27%), Positives = 93/212 (43%), Gaps = 40/212 (18%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD +SWT ++S G + AR Q P RD + WT++I Y R +R +EA+ F+ M
Sbjct: 172 KDAVSWTMVISGLAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNM 231
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ I D+ T++ +L+A + L+ L+LG + + + + + ALIDMY C D
Sbjct: 232 LSEGIAPDDVTVIGVLSACSQLKDLELGCSLHSLVKEKGMSMSENLVVALIDMYAKCGDF 291
Query: 124 EKAQ----------------------------------------KDKFSWTTMIVGLAIS 143
A+ +D ++ +MI G S
Sbjct: 292 GHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHS 351
Query: 144 GNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
G +AL +F M R ++ D V +LSAC
Sbjct: 352 GQLREALLLFMNMRRHDLRVDNFTVVSLLSAC 383
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 25/171 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ TA++ Y+ G+V+ A F +M +RD WTAMI G + L F +M+
Sbjct: 407 DIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMR 466
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ + +++LTA ++ L+ G + Y D+ ++ +Y I +E
Sbjct: 467 CDGFQPNPVSYIAVLTACSHSCLLNEG---RLYFDEMRI------------LYNIHPQIE 511
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ MI L SG D+A+D+ M ++P+ V + +LSAC
Sbjct: 512 H-------YGCMIDLLGRSGLLDEAMDLVKTM---PMQPNSVIWASILSAC 552
Score = 48.9 bits (115), Expect = 9e-04, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 128 KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+D SWT++I + + +A+D F ML I PD+V +GVLSAC+
Sbjct: 203 RDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQ 252
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 35/158 (22%), Positives = 71/158 (44%), Gaps = 12/158 (7%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRA- 87
F+++P ++I LR N F AL + M + D+ T + + A +L A
Sbjct: 1056 FNEIPSIALECCNSLITSSLRCNMFDAALEILHCMIVEGVTPDDVTFSATMKA-ISLSAS 1114
Query: 88 --LDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMI 137
L + + + + K + D+ ++LI Y + + + +T +I
Sbjct: 1115 PSLTSCQMLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAII 1174
Query: 138 VGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
A G+G +A+++F QM+ + +KPD V ++ ++ C
Sbjct: 1175 SACARYGDGARAMELFDQMVSSGLKPDNVTFLCAIAGC 1212
>gi|347954508|gb|AEP33754.1| chloroplast biogenesis 19, partial [Nasturtium officinale]
Length = 447
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 110/185 (59%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++K+ ++W ++ Y+ GQV+ A + FD+M RD + WTAM++G+++ EAL+ F
Sbjct: 82 MEDKNSVTWNTMIDGYMRSGQVNTAVKLFDEMLNRDLISWTAMVNGFVKKGFHEEALSWF 141
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ S + D I++ L A NL AL G WI Y+ KN++ N+LID+YC C
Sbjct: 142 REMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVMSQDFKNNVRVSNSLIDLYCRC 201
Query: 121 ADVEKAQK--DKF------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VE A++ DK SW ++IVG A +GN ++L F +M KPD V + G L
Sbjct: 202 GCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLFYFRKMQEEGFKPDAVTFTGAL 261
Query: 173 SACTH 177
+AC+H
Sbjct: 262 TACSH 266
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y G V+ ARQ FD+M +R V W ++I G+ E+L F++MQ
Sbjct: 193 SLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLFYFRKMQEEGFKP 252
Query: 71 DEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
D T LTA +++ ++ G + +T ++ I ++D+Y +E A K
Sbjct: 253 DAVTFTGALTACSHVGLVEEGLRYFQTMKRDYRISPRIEHYGCIVDLYSRAGRLEDALK 311
>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
Length = 655
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 114/177 (64%), Gaps = 8/177 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V+ Y + +A + FD++ +R+ V W+ MI GY R+ EAL LF++MQ + ++
Sbjct: 200 TALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVV 259
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-- 127
DE T+VS+++A A ALD G+W+ YI+K ++ D+ AL++MY C +E+A+
Sbjct: 260 PDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEV 319
Query: 128 ------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
KD +W++MIVGLAI+G + AL+ F +M A +KP+ V ++GVLSAC H+
Sbjct: 320 FDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHS 376
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 10/167 (5%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVN-RFREALTLFQEM-QTSNIMGDEFTIVS 77
G +D AR+ F Q+ + W +MI G + +E + LF++M + + FT+
Sbjct: 107 GDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAF 166
Query: 78 ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------D 129
+L A + + AL+ G+ + + K+ + F AL++ Y C D+ A K +
Sbjct: 167 VLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRN 226
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+W+TMI G A G ++AL +F M +A + PDEV V V+SAC
Sbjct: 227 LVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACA 273
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 11/150 (7%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFQEMQTSNI 68
TA+V+ Y G ++ A++ FD MP +D W++MI G L +N E AL F M+ + +
Sbjct: 301 TALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVG-LAINGLAEDALEEFFRMEEAKV 359
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA-- 126
+ T + +L+A A+ + G + + + + + ++D+ C + VE A
Sbjct: 360 KPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMVDLLCRASLVEDACT 419
Query: 127 -------QKDKFSWTTMIVGLAISGNGDKA 149
+ W T++VG S N DK+
Sbjct: 420 LVETMPISPNPVIWRTLLVGCKKSKNLDKS 449
>gi|414880744|tpg|DAA57875.1| TPA: hypothetical protein ZEAMMB73_657034, partial [Zea mays]
Length = 1822
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 74/180 (41%), Positives = 109/180 (60%), Gaps = 8/180 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+ TA+V+ G VD AR FD MP+RD+V W+AMI GY+ V R REAL LF EM
Sbjct: 1384 DVVCVTAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEML 1443
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV- 123
++ E T+VS+LTA A + LD G+W+ Y+ ++ I G AL+DMY C V
Sbjct: 1444 SAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVV 1503
Query: 124 -------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A+++ ++WT+ + GLA++G G + L +F +M A I+P+ V++V VL C+
Sbjct: 1504 TAMEVFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCS 1563
Score = 42.4 bits (98), Expect = 0.073, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 48/108 (44%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G V A + F+ M ER+ WT+ + G E L LF+ M+ + I
Sbjct: 1490 TALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGIQ 1549
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
+ + V++L + +D G +DK V ++D+Y
Sbjct: 1550 PNGVSFVAVLRGCSMAGLVDEGRACFDSMDKYGVDPWPEHYGCMVDLY 1597
>gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays]
gi|194690792|gb|ACF79480.1| unknown [Zea mays]
Length = 617
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 74/180 (41%), Positives = 109/180 (60%), Gaps = 8/180 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+ TA+V+ G VD AR FD MP+RD+V W+AMI GY+ V R REAL LF EM
Sbjct: 179 DVVCVTAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEML 238
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV- 123
++ E T+VS+LTA A + LD G+W+ Y+ ++ I G AL+DMY C V
Sbjct: 239 SAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVV 298
Query: 124 -------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A+++ ++WT+ + GLA++G G + L +F +M A I+P+ V++V VL C+
Sbjct: 299 TAMEVFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCS 358
Score = 42.4 bits (98), Expect = 0.073, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 48/108 (44%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G V A + F+ M ER+ WT+ + G E L LF+ M+ + I
Sbjct: 285 TALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGIQ 344
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
+ + V++L + +D G +DK V ++D+Y
Sbjct: 345 PNGVSFVAVLRGCSMAGLVDEGRACFDSMDKYGVDPWPEHYGCMVDLY 392
>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
Length = 1329
Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 112/185 (60%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+ +W ++ Y G +++A F+QMP +D + WT MI+GY R R+REA+ +F
Sbjct: 968 MPEKNEATWNCLIDGYTRLGNLELAESLFNQMPVKDIISWTTMINGYSRNKRYREAIAVF 1027
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M I+ DE T+ ++++A A+L L++G+ + Y +N D++ G+AL+DMY C
Sbjct: 1028 YKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTVQNGFVLDVYIGSALVDMYSKC 1087
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E+A +K+ F W ++I GLA G +AL MF++M S+KP+ V +V V
Sbjct: 1088 GSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNTVTFVSVF 1147
Query: 173 SACTH 177
+ACTH
Sbjct: 1148 TACTH 1152
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 76/171 (44%), Gaps = 25/171 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV +A+V Y G ++ A F +P+++ W ++I+G +EAL +F +M+
Sbjct: 1073 DVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKME 1132
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
++ + T VS+ TA + ++ G I ++ID Y I ++VE
Sbjct: 1133 MESVKPNTVTFVSVFTACTHAGLVEEGRRIY---------------RSMIDDYSIVSNVE 1177
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ + +G +AL++ M +P+ V + +L C
Sbjct: 1178 H-------YGCMVHLFSKAGLIYEALELIGSM---EFEPNAVIWGALLDGC 1218
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 62/144 (43%), Gaps = 10/144 (6%)
Query: 21 QVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80
++D+A QM + + ++ A+I G++ + +L + M ++ +T S++
Sbjct: 827 RLDLAVSFMTQMQKPNVFVYNALIKGFVTCSHPIRSLEFYVRMLRDSVSPSSYTYSSLVQ 886
Query: 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFS 132
A A A GE ++ +I K + LI Y + +A+K D +
Sbjct: 887 ASA--FASGFGESLQAHIWKFGFGFHVQIQTTLIGFYSASGRIREARKVFDEMPERDDVT 944
Query: 133 WTTMIVGLAISGNGDKALDMFSQM 156
WTTM+ + D A + +QM
Sbjct: 945 WTTMVSAYRQVLDMDSANSLANQM 968
>gi|222619002|gb|EEE55134.1| hypothetical protein OsJ_02921 [Oryza sativa Japonica Group]
Length = 493
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 116/178 (65%), Gaps = 9/178 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+++VS Y G V+ AR+ F++MPER+ V WT+MI G + RF+EA+ LF++MQ + +
Sbjct: 147 SSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVK 206
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
D+ TI +++++ + ALDLG ++ Y D + + ++ N+LIDMY C DV KA
Sbjct: 207 ADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQI 266
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGVLSACTHN 178
++D F+WT MI+G A++G +ALD+F+QM + P+EV ++GVL+AC+H
Sbjct: 267 FHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSHG 324
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 10/182 (5%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFQ 61
D A+++ Y + AR D P D V W +I GY+R +AL F
Sbjct: 38 SDSFVLNALINMYSSCNYPASARLVLDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFH 97
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
+M + DE T++++L A A A+ +G + N + + + G++L+ MY C
Sbjct: 98 QMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCG 157
Query: 122 DVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
VE+A +++ WT+MI G SG +A+D+F M A +K D+ V+S
Sbjct: 158 MVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVS 217
Query: 174 AC 175
+C
Sbjct: 218 SC 219
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 10/116 (8%)
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--- 127
D +++ ++A A + +LD+G K + +D F NALI+MY C A+
Sbjct: 4 DNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVL 63
Query: 128 -------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
D SW T+I G G +KAL F QM + ++ DEV + VL AC
Sbjct: 64 DSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACA 119
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
K++ +++ Y G V+ A Q F + +RD WT MI G+ EAL LF +
Sbjct: 241 GKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQ 300
Query: 63 MQTSN-IMGDEFTIVSILTA 81
M+ + +M +E + +LTA
Sbjct: 301 MEGEDKVMPNEVIFLGVLTA 320
>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 110/181 (60%), Gaps = 7/181 (3%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+DV+ T +V Y G V+IAR FD MPERD V W AMI Y + +EAL ++ M
Sbjct: 143 RDVVVCTGLVRCYGRNGCVEIARMVFDNMPERDLVAWNAMISCYSQAGYHQEALRVYDYM 202
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ N+ D FT+V +L++ +++ AL++G + + + ++F GNALIDMY C +
Sbjct: 203 RNENVGVDGFTLVGLLSSCSHVGALNMGVKLHRIASEKGLLRNVFVGNALIDMYAKCGSL 262
Query: 124 EKA-------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+ A +D F+W +MIVG + G GD+A+ F+QML A ++P+ +A++G+L C+
Sbjct: 263 DGALEVFNGMPRDAFTWNSMIVGFGVHGFGDEAIYFFNQMLEAGVRPNSIAFLGLLCGCS 322
Query: 177 H 177
H
Sbjct: 323 H 323
>gi|222616851|gb|EEE52983.1| hypothetical protein OsJ_35654 [Oryza sativa Japonica Group]
Length = 632
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 74/187 (39%), Positives = 117/187 (62%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ KDV SWT++V+ Y G ++ A Q F MP R+ V W+ MI Y ++N+ EA+ LF
Sbjct: 306 MEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLF 365
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWI-KTYIDKNKVKNDIFAGNALIDMYCI 119
+EM + + + T+VS+L+A A L LDLG WI + YI NK+ + GNALIDM+
Sbjct: 366 REMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAK 425
Query: 120 CADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C DV E A+++ SW TMI+ A+ G ++A+ +F Q+ +I PD++ ++G+
Sbjct: 426 CGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGL 485
Query: 172 LSACTHN 178
L++C+H+
Sbjct: 486 LASCSHS 492
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 9/167 (5%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+ V+ A+V Y N +D A + FD+MPERD V WT ++DGY R EA LF M
Sbjct: 176 ESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRM 235
Query: 64 QTSNIM-GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M + T+V+ ++A + L G + Y+ + V + NAL+DM+ C
Sbjct: 236 VVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGC 295
Query: 123 VEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI 161
V A+ KD +SWT+M+ A G+ + A +F M R ++
Sbjct: 296 VRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNV 342
Score = 42.7 bits (99), Expect = 0.052, Method: Composition-based stats.
Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 17/154 (11%)
Query: 37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDL------ 90
Y+L T M+ G+LR AL LF+ + + D T V + A A +
Sbjct: 102 YMLGT-MMRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGGTPSG 160
Query: 91 GEWIKTYIDK-NKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLA 141
GE I K V + GNAL+ Y ++ A ++D SWTT++ G A
Sbjct: 161 GEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYA 220
Query: 142 ISGNGDKALDMFSQM-LRASIKPDEVAYVGVLSA 174
+G D+A +F +M + ++P+ V V +SA
Sbjct: 221 RAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSA 254
>gi|449527549|ref|XP_004170773.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 487
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 111/183 (60%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
KDV+ WT +V Y G ++ AR FD+MPER+ + W+AM+ Y RV+ FRE L LF++
Sbjct: 174 GKDVVVWTVMVDGYGKVGDIESARVLFDEMPERNVISWSAMMAAYSRVSDFREVLCLFRQ 233
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
MQ NI+ ++ IVS+LTA A+L A+ G W+ +Y + + ++ AL+DMY C
Sbjct: 234 MQKKNIVPNDSVIVSVLTACAHLGAITQGLWMHSYAKRYGLDSNPILATALVDMYSKCGY 293
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+E A KD +W MI G A++GN K+L++F +M+ + + E +V +L+A
Sbjct: 294 IESALEVFEGISNKDAGAWNAMISGFAMTGNVVKSLELFDKMIASGTQATEATFVSILAA 353
Query: 175 CTH 177
CTH
Sbjct: 354 CTH 356
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G ++ A + F+ + +D W AMI G+ ++L LF +M S
Sbjct: 282 TALVDMYSKCGYIESALEVFEGISNKDAGAWNAMISGFAMTGNVVKSLELFDKMIASGTQ 341
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
E T VSIL A + + ++ G E+ +V+ ++D+ VE A+K
Sbjct: 342 ATEATFVSILAACTHAKMVERGLEFFDQMYPVYRVQPQFEHYACVVDLMARAGMVEDAEK 401
>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
Length = 564
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 114/177 (64%), Gaps = 8/177 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V+ Y + +A + FD++ +R+ V W+ MI GY R+ EAL LF++MQ + ++
Sbjct: 131 TALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVV 190
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-- 127
DE T+VS+++A A ALD G+W+ YI+K ++ D+ AL++MY C +E+A+
Sbjct: 191 PDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEV 250
Query: 128 ------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
KD +W++MIVGLAI+G + AL+ F +M A +KP+ V ++GVLSAC H+
Sbjct: 251 FDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHS 307
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 10/167 (5%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVN-RFREALTLFQEM-QTSNIMGDEFTIVS 77
G +D AR+ F Q+ + W +MI G + +E + LF++M + + FT+
Sbjct: 38 GDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAF 97
Query: 78 ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------D 129
+L A + + AL+ G+ + + K+ + F AL++ Y C D+ A K +
Sbjct: 98 VLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRN 157
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+W+TMI G A G ++AL +F M +A + PDEV V V+SAC
Sbjct: 158 LVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACA 204
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 11/150 (7%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFQEMQTSNI 68
TA+V+ Y G ++ A++ FD MP +D W++MI G L +N E AL F M+ + +
Sbjct: 232 TALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVG-LAINGLAEDALEEFFRMEEAKV 290
Query: 69 MGDEFTIVSILTARANLRALDLGE--W-------IKTYIDKNKVKNDIFAGNALIDMYCI 119
+ T + +L+A A+ + G W I ++ D+ +L++ C
Sbjct: 291 KPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMVDLLCRASLVEDACT 350
Query: 120 CADVEKAQKDKFSWTTMIVGLAISGNGDKA 149
+ + W T++VG S N DK+
Sbjct: 351 LVETMPISPNPVIWRTLLVGCKKSKNLDKS 380
>gi|347954510|gb|AEP33755.1| chloroplast biogenesis 19, partial [Olimarabidopsis pumila]
Length = 475
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 109/185 (58%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +K+ ++W ++ Y+ GQV A + FD+MPE D + WTAM++G+++ EAL F
Sbjct: 110 MDDKNSVTWNTMIDGYMRSGQVHNAVKLFDKMPEPDLISWTAMVNGFVKKGFHEEALVWF 169
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ S + D I++ L A NL AL LG W+ Y+ KN++ N+LID+YC C
Sbjct: 170 REMQISGVKPDYVAIIAALNACTNLGALSLGLWVHRYVMSQDFKNNVRVSNSLIDLYCRC 229
Query: 121 ADVEKAQK--DKF------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VE A++ DK SW ++IVG A +GN ++L F +M KP+ V + G L
Sbjct: 230 GCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPNAVTFTGAL 289
Query: 173 SACTH 177
+AC+H
Sbjct: 290 TACSH 294
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y G V+ AR+ FD+M +R V W ++I G+ E+L F++MQ
Sbjct: 221 SLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKP 280
Query: 71 DEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
+ T LTA +++ +D G + ++ + I L+D+Y +E A K
Sbjct: 281 NAVTFTGALTACSHVGLVDEGLRFFQSMKRDYNISPRIEHYGCLVDLYSRAGRLEDALK 339
>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 111/186 (59%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++K+V SW +VS G ++ AR+ F++M E++ + W+AMIDGY++ ++EAL +F
Sbjct: 222 MEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVF 281
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
MQ I +F + S+L A ANL ALD G WI Y++ N D G AL+DMY C
Sbjct: 282 NVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKC 341
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ A +K+ F+W MI GL + G + A+++F +M + +P+ + +GVL
Sbjct: 342 GRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVL 401
Query: 173 SACTHN 178
SAC H+
Sbjct: 402 SACAHS 407
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 47/180 (26%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV +A + Y + G+V+ AR+ + D + + AMIDGYL+ A LF M+
Sbjct: 164 DVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSME 223
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
N+ G W N ++ C +E
Sbjct: 224 DKNV----------------------GSW-----------------NVMVSGMAKCGMIE 244
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+A +K++ SW+ MI G G +AL++F+ M R I+P + VL+AC
Sbjct: 245 EARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACA 304
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + TA+V Y G++D+A F++M +++ W AMI G R +A+ LF +MQ
Sbjct: 327 DAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQ 386
Query: 65 TSNIMGDEFTIVSILTARANLRALDLG 91
+ T++ +L+A A+ +D G
Sbjct: 387 KQKFRPNGITLLGVLSACAHSGMVDEG 413
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 65/143 (45%), Gaps = 8/143 (5%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81
++ A + F+ +P + ++ +I G L+ N +A+ + +M ++ ++FT ++ A
Sbjct: 80 LNFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKA 139
Query: 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSW 133
A + G + ++ K + D+ +A I MY +VE A++ D +
Sbjct: 140 CTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICF 199
Query: 134 TTMIVGLAISGNGDKALDMFSQM 156
MI G G + A ++F M
Sbjct: 200 NAMIDGYLKCGEVEAAKELFWSM 222
>gi|255542942|ref|XP_002512534.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548495|gb|EEF49986.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 444
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 111/181 (61%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D ISW +++S Y+ G+++ A+ FD M ++D V W+AMI GY + +RF E L LFQEMQ
Sbjct: 224 DQISWNSMISGYLKCGEIEKAKALFDIMNDKDLVSWSAMISGYAQHDRFAETLALFQEMQ 283
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ DE T+VS+++A +L ALD G+WI Y+ KN +K ++ G LIDMY VE
Sbjct: 284 LDGVKPDETTLVSVVSACTHLAALDQGKWIHLYLRKNGLKINVILGTTLIDMYMKFGCVE 343
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A +K +W +I+GLA++G +LD FS+M + P+E+ +V VL AC
Sbjct: 344 DALEVFHGMKEKGVSTWNAVILGLALNGLVHMSLDTFSEMKDCGVVPNEITFVAVLVACR 403
Query: 177 H 177
H
Sbjct: 404 H 404
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 105/212 (49%), Gaps = 42/212 (19%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D++SW +I++ +G V A + F +M ++D V W+A+I GY + R+ EAL F +M
Sbjct: 95 DLVSWNSILA---GKGDVTEAYRLFSEMCKKDLVSWSALISGYEQNGRYEEALVTFGKMN 151
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
IM DE +VS+L+A A+L A+ G+ + + K +++ + NALI MY C +++
Sbjct: 152 AYGIMVDEVVVVSVLSACAHLFAVKTGKLVHSLAVKIGIESYVNLQNALIHMYSSCREID 211
Query: 125 KAQK--------DKFSWTTMIVGLAISGNGDKA--------------------------- 149
AQK D+ SW +MI G G +KA
Sbjct: 212 SAQKLFNVGYSLDQISWNSMISGYLKCGEIEKAKALFDIMNDKDLVSWSAMISGYAQHDR 271
Query: 150 ----LDMFSQMLRASIKPDEVAYVGVLSACTH 177
L +F +M +KPDE V V+SACTH
Sbjct: 272 FAETLALFQEMQLDGVKPDETTLVSVVSACTH 303
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 68/145 (46%), Gaps = 17/145 (11%)
Query: 43 MIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDL-GEWIKTYIDKN 101
M+ +++ N + +++ M N+ D FT IL +LR G+ I ++ K
Sbjct: 1 MMRAFVQRNYPYYCMDMYKWMLQENVEPDNFT-YPILLQSCSLRVAKFDGKLIHCHVLKM 59
Query: 102 KVKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMF 153
D++ N LI++Y +C ++ A+K D SW +++ G G+ +A +F
Sbjct: 60 SFNFDVYVQNTLINLYSVCQNLGDARKVFDESPVLDLVSWNSILAG---KGDVTEAYRLF 116
Query: 154 SQMLRASIKPDEVAYVGVLSACTHN 178
S+M K D V++ ++S N
Sbjct: 117 SEM----CKKDLVSWSALISGYEQN 137
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+VI T ++ Y+ G V+ A + F M E+ W A+I G +L F EM+
Sbjct: 325 NVILGTTLIDMYMKFGCVEDALEVFHGMKEKGVSTWNAVILGLALNGLVHMSLDTFSEMK 384
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGE-WIKTYIDKNKVKND 106
++ +E T V++L A ++ ++ G + I ++K++ +
Sbjct: 385 DCGVVPNEITFVAVLVACRHMGLVEEGRCHFSSMIQEHKIEPN 427
>gi|91806359|gb|ABE65907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 555
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 112/186 (60%), Gaps = 10/186 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +K VI+WT ++ Y N +D AR+ FD MPER+ V W MI GY + + +E +TLF
Sbjct: 202 MTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGITLF 261
Query: 61 QEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
QEMQ T+++ D+ TI+S+L A ++ AL LGEW ++ + K+ + A++DMY
Sbjct: 262 QEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSK 321
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C ++EKA +K SW MI G A++GN ALD+F M+ KPDE+ + V
Sbjct: 322 CGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEE-KPDEITMLAV 380
Query: 172 LSACTH 177
++AC H
Sbjct: 381 ITACNH 386
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 33/176 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPE-RDYVLWTAMIDGYLRVNRFREALTL 59
M ++ +SWTA++S YI G++D+A + FDQMP +D V++ AM+DG+++ A L
Sbjct: 139 MPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVKSGDMTSARRL 198
Query: 60 FQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
F EM ++ T +++ N++ DI A L D
Sbjct: 199 FDEMTHKTVI----TWTTMIHGYCNIK-------------------DIDAARKLFDAM-- 233
Query: 120 CADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGVLSA 174
+++ SW TMI G + + + +F +M S+ PD+V + VL A
Sbjct: 234 ------PERNLVSWNTMIGGYCQNKQPQEGITLFQEMQATTSLDPDDVTILSVLPA 283
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 10/145 (6%)
Query: 22 VDIARQCFDQMPER-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG-DEFTIVSIL 79
+ AR+ FDQ P+R D L +MI YL ++ ++ L+++++ D FT ++
Sbjct: 26 IGYARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLT 85
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKF 131
+ + + G + + I + D++ ++DMY + E + +
Sbjct: 86 KSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEV 145
Query: 132 SWTTMIVGLAISGNGDKALDMFSQM 156
SWT +I G G D A +F QM
Sbjct: 146 SWTALISGYIRCGELDLASKLFDQM 170
>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
Length = 723
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 72/178 (40%), Positives = 105/178 (58%), Gaps = 8/178 (4%)
Query: 9 WTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI 68
W I+ Y G VDIAR FDQM RD + + +MI GY+ R R+AL LF +++ +
Sbjct: 305 WNVIIDGYCKLGHVDIARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQLRRHGM 364
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA-- 126
D FT+VS+LTA A+L AL G + I++ V+ D++ AL+DMY C V++A
Sbjct: 365 RADNFTVVSLLTACASLGALPQGRALHASIEQRIVEEDVYLVTALVDMYMKCGRVDEATA 424
Query: 127 ------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
++D +W+ MI GLA +G G AL+ F QM R +P V Y+ VL+AC+H+
Sbjct: 425 VFHRMGERDVHTWSAMIAGLAFNGMGMDALESFCQMKRDGFQPTSVTYIAVLTACSHS 482
Score = 90.5 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 55/212 (25%), Positives = 91/212 (42%), Gaps = 40/212 (18%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD + W ++ + G +D AR+ Q PER+ V WT++I GY R R +A+ F M
Sbjct: 167 KDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCM 226
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ + DE ++ L+A + L+ L+ G + + K +++ LIDMY C D+
Sbjct: 227 LSDGVEPDEVAVIGALSACSKLKNLEFGRLLHLLVGKKRIQMTDKLVVTLIDMYAKCGDI 286
Query: 124 EKAQ----------------------------------------KDKFSWTTMIVGLAIS 143
+AQ +D ++ +MI G S
Sbjct: 287 AQAQAVFDAVGRGQKPEPWNVIIDGYCKLGHVDIARSLFDQMGARDVITFNSMITGYIHS 346
Query: 144 GNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
G AL +F Q+ R ++ D V +L+AC
Sbjct: 347 GRLRDALQLFMQLRRHGMRADNFTVVSLLTAC 378
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 47/172 (27%), Positives = 76/172 (44%), Gaps = 25/172 (14%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+DV TA+V Y+ G+VD A F +M ERD W+AMI G +AL F +M
Sbjct: 401 EDVYLVTALVDMYMKCGRVDEATAVFHRMGERDVHTWSAMIAGLAFNGMGMDALESFCQM 460
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ T +++LTA ++ L+ G N + ++ + +
Sbjct: 461 KRDGFQPTSVTYIAVLTACSHSSLLNEGRQ---------------HFNEMRSLHKLHPQI 505
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E + MI LA SG D+A+ + M ++P+ V + +LSAC
Sbjct: 506 EH-------YGCMIDLLARSGLLDEAMHLVQTM---PMQPNAVIWASILSAC 547
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 35/54 (64%)
Query: 123 VEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
V+ +++ SWT++I G + +G A+ F+ ML ++PDEVA +G LSAC+
Sbjct: 193 VQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVEPDEVAVIGALSACS 246
>gi|357125571|ref|XP_003564466.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Brachypodium distachyon]
Length = 600
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 73/178 (41%), Positives = 112/178 (62%), Gaps = 9/178 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPE-RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI 68
T +++ Y +V +AR FD M E ++ V W++MI GY R+ EAL LF++MQ +
Sbjct: 166 TGLLNLYARCEEVALARNVFDGMVEDKNLVAWSSMIGGYSRMGMVNEALGLFRDMQAVGV 225
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA-- 126
DE T+VS+++A A ALDLG+W+ +ID+ + D+ ALIDMY C +E+A
Sbjct: 226 NPDEVTMVSVISACAKAGALDLGKWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKS 285
Query: 127 ------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
++D +W+ MIVGLA+ G + AL +FS+ML+ ++P+ V +VGVLSAC H+
Sbjct: 286 VFDSMVERDTKAWSAMIVGLAMHGLAEDALGLFSRMLQLKVRPNNVTFVGVLSACAHS 343
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 7/136 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ Y G ++ A+ FD M ERD W+AMI G +AL LF M +
Sbjct: 268 TALIDMYAKCGLIERAKSVFDSMVERDTKAWSAMIVGLAMHGLAEDALGLFSRMLQLKVR 327
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
+ T V +L+A A+ +D G + + ++ + ++D+ C +++A
Sbjct: 328 PNNVTFVGVLSACAHSGLVDDGRRYWCTMQELGIEASMENYGCMVDLLCRSGLLDEA--- 384
Query: 130 KFSWTTMIVGLAISGN 145
FS+ T G+ IS N
Sbjct: 385 -FSFVT---GMPISPN 396
>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 534
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DVISW +++S Y GQ+ A+ F M ++ V WTAMI GY + + EA+ F
Sbjct: 170 MSERDVISWNSLLSGYARLGQMKKAKGLFHLMIDKTIVSWTAMISGYTGIGCYVEAMDFF 229
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ + I DE +++S+L + A+L +L+LG+WI Y ++ + NALI+MY C
Sbjct: 230 REMQLAGIEPDEISLISVLPSCAHLGSLELGKWIHMYAERRGLLKQTGVCNALIEMYSKC 289
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ +A KD SW+TMI G A GN +A + F +M RA +KP+ + ++G+L
Sbjct: 290 GMLSQAIQLFEQTKGKDVISWSTMISGYAYHGNAHRAFETFIEMQRAKVKPNGITFLGLL 349
Query: 173 SACTH 177
SAC+H
Sbjct: 350 SACSH 354
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 40/198 (20%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI-MGDEFTIVSI 78
G +D A + F+Q+ + L+ ++I Y + + + + +++++ I D FT +
Sbjct: 56 GDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKTIEFPDRFTFPFM 115
Query: 79 LTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDK 130
+ A+L + LG+ + ++ K + + NALIDMY D+ E +++D
Sbjct: 116 FKSCASLGSCYLGKQVHGHLYKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMSERDV 175
Query: 131 FSWTTMIVGLAISGNGDK-------------------------------ALDMFSQMLRA 159
SW +++ G A G K A+D F +M A
Sbjct: 176 ISWNSLLSGYARLGQMKKAKGLFHLMIDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLA 235
Query: 160 SIKPDEVAYVGVLSACTH 177
I+PDE++ + VL +C H
Sbjct: 236 GIEPDEISLISVLPSCAH 253
>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
Length = 921
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 73/186 (39%), Positives = 107/186 (57%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW+ +VS Y +G +++AR FD+MP ++ V WT M+ + EA LF
Sbjct: 558 MPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLF 617
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M+ +++ D +VSIL A A +L LG+ I Y+ K + NALIDM+C C
Sbjct: 618 AQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKC 677
Query: 121 A---------DVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
D E QKD SW ++I G A+ G+GDKAL++F+QM + PD V + V
Sbjct: 678 GCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINV 737
Query: 172 LSACTH 177
LSACTH
Sbjct: 738 LSACTH 743
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 31/178 (17%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW ++ + G++ R+ FD+MPE+D V W ++DGY + A LF
Sbjct: 496 MPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELF 555
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
Q M N++ T+VS + +L E + DK KN +
Sbjct: 556 QRMPERNVVSWS-TMVSGYCKKGDL------EMARVIFDKMPSKNLV------------- 595
Query: 121 ADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+WT M+ A G D+A +F+QM AS++ D A V +L+AC +
Sbjct: 596 -----------TWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAES 642
>gi|225450551|ref|XP_002277430.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 500
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 115/187 (61%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D+ SWT +++ Y N V AR+ FD+MPER + ++AMI Y+R NRFREAL LF
Sbjct: 149 MGYRDIASWTTLLACYANSCSVKAARKVFDEMPERSVISYSAMIAAYVRGNRFREALDLF 208
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKN-DIFAGNALIDMYCI 119
+E+ + I + ++S+L A ANL ALD+G W+ +Y+ ++K D ALIDM+
Sbjct: 209 RELFSVKIEPSDSCVMSVLCACANLGALDVGRWVYSYVCQSKGDYVDSRIATALIDMFFK 268
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C +E A +K WT M+ GLA+ G G++ ++ F +M+ + +KP+ V +V +
Sbjct: 269 CGSIEHALLVFEGAKEKHVGEWTAMLSGLAMHGLGEQLIEAFEKMVDSGVKPNGVTFVAL 328
Query: 172 LSACTHN 178
LS C+H+
Sbjct: 329 LSGCSHS 335
>gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05750, chloroplastic-like [Cucumis sativus]
Length = 525
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 112/182 (61%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
K+ +SW +++ ++ G++++A Q FD+MP RD + WTA+I+G L+ +AL F +M
Sbjct: 159 KNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQM 218
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
Q S + D +I+++L A A+L AL LG W+ ++ + K++I N+LIDMY C +
Sbjct: 219 QRSGVAADYVSIIAVLAACADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCI 278
Query: 124 E--------KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E A++ SW ++IVG A++G D++L+ F M + KPD V+Y G L+AC
Sbjct: 279 EFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFXAMQKEGFKPDGVSYTGALTAC 338
Query: 176 TH 177
+H
Sbjct: 339 SH 340
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 74/180 (41%), Gaps = 42/180 (23%)
Query: 38 VLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL--RALDLGEWIK 95
VLWT+ + Y R + EA F M+ + + + T +++L+A A+ + +
Sbjct: 58 VLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLH 117
Query: 96 TYIDKNKV-KNDIFAGNALIDMYCICADVEKAQK-------------------------- 128
Y K + + G ALIDMY CA + A+K
Sbjct: 118 GYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEI 177
Query: 129 -------------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
D SWT +I GL G ++AL+ F QM R+ + D V+ + VL+AC
Sbjct: 178 ELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAAC 237
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 30/170 (17%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFR-EALTLFQEMQTSNIM 69
+++ Y G ++ ARQ F +M +R V W ++I G+ VN F E+L F MQ
Sbjct: 267 SLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGF-AVNGFADESLEFFXAMQKEGFK 325
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
D + LTA ++ ++ G E +K+ I ++D+Y
Sbjct: 326 PDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLY----------- 374
Query: 129 DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC-TH 177
+G + AL+M +M +KP+EV +L+AC TH
Sbjct: 375 ------------GRAGRLEDALNMIEEM---PMKPNEVVLGSLLAACRTH 409
>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 572
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 72/190 (37%), Positives = 119/190 (62%), Gaps = 15/190 (7%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+KD+ +W ++V+ Y G ++ AR+ FD+MPER+ + W+ +I+GY+ +++EAL LF+E
Sbjct: 124 SKDLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFRE 183
Query: 63 MQTSN-----IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
MQ + ++FT+ ++L+A L AL+ G+W+ +YIDK V+ DI G ALIDMY
Sbjct: 184 MQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIVLGTALIDMY 243
Query: 118 CICADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVA 167
C +E+A +KD +++ MI LA+ G D+ +FS+M + +I P+ V
Sbjct: 244 AKCGSLERAKRVFDALGSKKDVKAYSAMICCLAMYGLTDECFQVFSEMTTSNNINPNSVT 303
Query: 168 YVGVLSACTH 177
+VG+L AC H
Sbjct: 304 FVGILGACVH 313
>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 609
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 107/185 (57%), Gaps = 10/185 (5%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N+D+ SW ++S Y G++D ARQ FD+MPE+D V WT MI G L+V F EAL +F
Sbjct: 165 NRDMYSWNIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHN 224
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M + +E+T+ S L A ANL ALD G W+ YI KN ++ + LIDMY C +
Sbjct: 225 MLAKGMSPNEYTLASSLAACANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGE 284
Query: 123 VEKAQK----------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E A K + W MI G A+ G +A+++F QM + P++V +V +L
Sbjct: 285 LEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTFVALL 344
Query: 173 SACTH 177
+AC+H
Sbjct: 345 NACSH 349
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 73/197 (37%), Gaps = 41/197 (20%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGY-LRVNRFREALTLFQEM-QTSNIMGDEFTIVS 77
+ A FD P+ D L+ +I ++ T F+ + + ++ ++++
Sbjct: 48 APISYAHMVFDHFPQPDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAF 107
Query: 78 ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC---ICADVEK--------- 125
+ + GE ++ + K ++N++F NALI MY D K
Sbjct: 108 AFKGCGSGVGVLEGEQVRVHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRD 167
Query: 126 ---------------------------AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158
+KD SWTTMI G G +ALD+F ML
Sbjct: 168 MYSWNIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLA 227
Query: 159 ASIKPDEVAYVGVLSAC 175
+ P+E L+AC
Sbjct: 228 KGMSPNEYTLASSLAAC 244
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 75/168 (44%), Gaps = 29/168 (17%)
Query: 11 AIVSRYINRGQVDIARQCFDQMP--ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI 68
++ Y G+++ A + F+ P +R W AMI G+ + +EA+ +F++M+ +
Sbjct: 274 GLIDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKV 333
Query: 69 MGDEFTIVSILTARANLRALDLGE-WIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127
++ T V++L A ++ ++ G + ++ +VK ++ L+D+
Sbjct: 334 SPNKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKPELEHYGCLVDL----------- 382
Query: 128 KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
L +G +A ++ S M + PD + +LSAC
Sbjct: 383 ------------LGRAGRLKEAEEIISSM---HLTPDVAIWGALLSAC 415
>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Brachypodium distachyon]
Length = 544
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 74/180 (41%), Positives = 110/180 (61%), Gaps = 9/180 (5%)
Query: 7 ISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTS 66
++WT++V+ + G V+ AR+ F++MPERD V W AMI G + EAL LF+ M
Sbjct: 109 VTWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEE 168
Query: 67 NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126
+ + T+VS+L+A AL+ G+W+ +++K +++ D F G AL+DMY C VE A
Sbjct: 169 GFVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELA 228
Query: 127 --------QKDKFSWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGVLSACTH 177
++ +W MI GLA++G KALDMF QM L ++ PDEV +VGVL AC+H
Sbjct: 229 LEVFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSH 288
>gi|125562361|gb|EAZ07809.1| hypothetical protein OsI_30067 [Oryza sativa Indica Group]
Length = 642
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 116/178 (65%), Gaps = 9/178 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+++VS Y G V+ AR+ F++MPER+ V WT+MI G + RF+EA+ LF++MQ + +
Sbjct: 147 SSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVK 206
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
D+ TI +++++ + ALDLG ++ Y D + + ++ N+LIDMY C DV KA
Sbjct: 207 ADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQI 266
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGVLSACTHN 178
++D F+WT MI+G A++G +ALD+F+QM + P+EV ++GVL+AC+H
Sbjct: 267 FRGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSHG 324
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 10/181 (5%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFQE 62
D A+++ Y + AR D P D V W +I GY+R +AL F +
Sbjct: 39 DSFVLNALINMYSSCNYPASARLVLDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQ 98
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M + DE T++++L A A A+ +G + N + + + G++L+ MY C
Sbjct: 99 MAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGM 158
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
VE+A +++ WT+MI G SG +A+D+F M A +K D+ V+S+
Sbjct: 159 VEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSS 218
Query: 175 C 175
C
Sbjct: 219 C 219
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 10/116 (8%)
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--- 127
D +++ ++A A + +LD+G K + +D F NALI+MY C A+
Sbjct: 4 DNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVL 63
Query: 128 -------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
D SW T+I G G +KAL F QM + ++ DEV + VL AC
Sbjct: 64 DSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACA 119
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
K++ +++ Y G V+ A Q F + +RD WT MI G+ EAL LF +
Sbjct: 241 GKELSVKNSLIDMYSKCGDVNKAYQIFRGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQ 300
Query: 63 MQTSN-IMGDEFTIVSILTA 81
M+ + +M +E + +LTA
Sbjct: 301 MEGEDKVMPNEVIFLGVLTA 320
>gi|357131531|ref|XP_003567390.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Brachypodium distachyon]
Length = 531
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 113/185 (61%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D SW+ ++ Y RG + AR+ FD+MP ++ V WTAMI+GY + R +E+++LF
Sbjct: 205 MPTRDSSSWSVLIVGYCKRGSMQSARELFDKMPGKNLVTWTAMINGYAQCGRPKESISLF 264
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+E++ I D T+V ++++ + + + L W+ Y+D+ +++ + AL+DM+ C
Sbjct: 265 RELEAVGIEPDAATMVGVISSASQIGSTALAGWVGNYVDRKRIERNEKVLTALVDMHAKC 324
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+VE+A Q D + +T +I GLA G+ AL +F +M +++PD + +VGVL
Sbjct: 325 GNVEQALNCFREIEQPDAYPYTALISGLATHGHSTLALQVFERMRAQAVRPDPITFVGVL 384
Query: 173 SACTH 177
+AC+H
Sbjct: 385 TACSH 389
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 67/181 (37%), Gaps = 47/181 (25%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
D +S+ +++ + V A F MP R V W AM+ Y+ F A +F EM
Sbjct: 146 PDAVSFNSLLCAHARLASVPAAESLFTSMPSRTQVSWNAMVVVYVNAGDFASARLVFDEM 205
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
T D W + LI YC +
Sbjct: 206 PTR----------------------DSSSW-----------------SVLIVGYCKRGSM 226
Query: 124 EKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ A+ K+ +WT MI G A G +++ +F ++ I+PD VGV+S+
Sbjct: 227 QSARELFDKMPGKNLVTWTAMINGYAQCGRPKESISLFRELEAVGIEPDAATMVGVISSA 286
Query: 176 T 176
+
Sbjct: 287 S 287
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
+N+ V+ TA+V + G V+ A CF ++ + D +TA+I G AL +F+
Sbjct: 309 RNEKVL--TALVDMHAKCGNVEQALNCFREIEQPDAYPYTALISGLATHGHSTLALQVFE 366
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLG 91
M+ + D T V +LTA ++ +D+G
Sbjct: 367 RMRAQAVRPDPITFVGVLTACSHAGLVDMG 396
>gi|413946997|gb|AFW79646.1| hypothetical protein ZEAMMB73_771020 [Zea mays]
Length = 505
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 113/185 (61%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV++W +++ Y+ G AR+ FD MPER+ V WT +I GY ++ R +A+ +F
Sbjct: 139 MAVRDVVAWNVMIAGYVKAGDQAHARELFDAMPERNVVSWTTVIGGYAQMKRPEKAVEVF 198
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ MQ I D ++S+L A +L A+DLGEW+ ++ + + +I N++IDMY C
Sbjct: 199 RRMQVEGIEADGVALLSVLAACGDLGAVDLGEWVHRFVVRRGLCQEIPLMNSIIDMYMKC 258
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+EKA +K +WTT+I G A+ G G +A++MF +M R ++ P+ V ++ +L
Sbjct: 259 GCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQAVEMFCRMERENMAPNAVTFLAIL 318
Query: 173 SACTH 177
SAC+H
Sbjct: 319 SACSH 323
Score = 38.9 bits (89), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 39/114 (34%)
Query: 101 NKVKNDIFAGNALIDMYCICADVEKA---------------------------------- 126
V +D ++L+ +YC C V A
Sbjct: 107 GHVASDAHVSSSLVQLYCTCGHVADARSVFDEMAVRDVVAWNVMIAGYVKAGDQAHAREL 166
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+++ SWTT+I G A +KA+++F +M I+ D VA + VL+AC
Sbjct: 167 FDAMPERNVVSWTTVIGGYAQMKRPEKAVEVFRRMQVEGIEADGVALLSVLAAC 220
>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 118/182 (64%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+DV++ T ++S Y ++G V+ A F ++ +D V WTAMIDG++R AL F+ M
Sbjct: 210 EDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGM 269
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
Q N+ +EFTIV +L+A + L AL++G W+ +Y+ K +++ ++F GNALI+MY C +
Sbjct: 270 QGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSI 329
Query: 124 EKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
++AQ +D ++ TMI GL+++G +A+++F M+ ++P V +VGVL+AC
Sbjct: 330 DEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNAC 389
Query: 176 TH 177
+H
Sbjct: 390 SH 391
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 84/193 (43%), Gaps = 38/193 (19%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81
+D A + F + L+TA+IDG++ + EA+ L+ M +I+ D + + SIL A
Sbjct: 97 IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKA 156
Query: 82 -----------RANLRALDLG----EWIKTYI-----------DKNKV----KNDIFAGN 111
+ RAL LG ++ I D +V D+ A
Sbjct: 157 CGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAST 216
Query: 112 ALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKP 163
+I Y VE+A +KD WT MI G + ++AL+ F M +++P
Sbjct: 217 VMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRP 276
Query: 164 DEVAYVGVLSACT 176
+E V VLSAC+
Sbjct: 277 NEFTIVCVLSACS 289
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 27/166 (16%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+++ Y G +D A+ FD+M +RD + + MI G + R+A+ LF+ M +
Sbjct: 318 ALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRP 377
Query: 71 DEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
T V +L A ++ +D G E + +V+ I ++D+
Sbjct: 378 TNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDL------------- 424
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
L G ++A D+ M + PD + +LSAC
Sbjct: 425 ----------LGRVGRLEEAYDLIRTM---KMTPDHIMLGTLLSAC 457
>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Brachypodium distachyon]
Length = 554
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 114/186 (61%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ +DV+SW ++S + GQ+ AR F+ MP++ V WTA++ GY F A+ F
Sbjct: 179 MQERDVVSWNTVISAHARLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVEAF 238
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ MQ D+ +IV++L A A L AL+LG WI Y +++++ + + NAL++MY C
Sbjct: 239 RLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNRHQMLRETYVCNALVEMYAKC 298
Query: 121 ADVEK--------AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGV 171
+++ A+KD SW+TM+ GLA G +A+ +F++M R ++KP+ + +VG+
Sbjct: 299 GCIDQALQLFNGMAEKDVISWSTMVGGLAAHGRAQEAVQLFTEMERQGTVKPNGITFVGL 358
Query: 172 LSACTH 177
LSAC+H
Sbjct: 359 LSACSH 364
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 90/213 (42%), Gaps = 46/213 (21%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ----- 64
T IV G+V A + F Q+ E + L AMI Y + +R +A+T++ M
Sbjct: 49 TQIVHLCNAHGRVAHATRVFSQVREPNLHLHNAMIKAYAQNHRHLDAITVYIRMLRRRPF 108
Query: 65 --TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
S GD FT +L A L ALDLG+ + ++ ++ +++ N+LI+MY D
Sbjct: 109 PWISCTGGDRFTYPFLLKACGGLMALDLGKQVHGHVVRSGCESNAIVQNSLIEMYTRAGD 168
Query: 123 VEKAQK-------------------------------------DK--FSWTTMIVGLAIS 143
+ A+K DK SWT ++ G +
Sbjct: 169 LVLARKVFDGMQERDVVSWNTVISAHARLGQMRKARAVFNSMPDKTVVSWTALVSGYTAA 228
Query: 144 GNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
G+ A++ F M +PD+V+ V VL AC
Sbjct: 229 GDFSGAVEAFRLMQMEGFEPDDVSIVAVLPACA 261
>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 580
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 105/176 (59%), Gaps = 8/176 (4%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
++ Y G +D A FD+MPE D W+ M+ GY + + EAL LF+EMQ N+
Sbjct: 147 GLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEALKLFREMQAENVSS 206
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK----- 125
D FT+ S++ +L ALDLG+W+ +Y+DK VK D+ G AL+ MY C ++
Sbjct: 207 DAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVF 266
Query: 126 ---AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
A++D +W+TMI G AI G+G+KAL +F M R+ P+ V + VLSAC+H+
Sbjct: 267 QGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHS 322
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 1/125 (0%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+ TA+V Y G +D A + F M ERD W+ MI GY +AL LF M+
Sbjct: 242 DVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMK 301
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWI-KTYIDKNKVKNDIFAGNALIDMYCICADV 123
S + + T S+L+A ++ ++ G I +T + K+ I ++D++C V
Sbjct: 302 RSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMV 361
Query: 124 EKAQK 128
A K
Sbjct: 362 GHAHK 366
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 8/164 (4%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G V A + F + +W +I GY + A+ L+++M I + +T +L
Sbjct: 55 GHVAYAHRIFSCTHHPNLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVL 114
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY--CICADV------EKAQKDKF 131
A L L G+ + + I K + + N LI +Y C C D E + D
Sbjct: 115 KACCKLLRLCEGQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSA 174
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
SW+TM+ G A +G +AL +F +M ++ D V+ C
Sbjct: 175 SWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVC 218
>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
Length = 654
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 116/187 (62%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M N+DVISWT ++S Y+ G ++ A + FD +P +D V WT M+ G+ + + REA+ F
Sbjct: 208 MPNRDVISWTELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFF 267
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV--KNDIFAGNALIDMYC 118
++MQ + DE T++ +++A A L A +WI+ +K++ K+ + G+ALIDMY
Sbjct: 268 EKMQEFGVETDEITLIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYS 327
Query: 119 ICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C V A +++ +S+++MI+G A+ G A+ +F +M++ IKP+ V ++G
Sbjct: 328 KCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIG 387
Query: 171 VLSACTH 177
VL+AC+H
Sbjct: 388 VLTACSH 394
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 74/187 (39%), Gaps = 40/187 (21%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88
F+Q+ + L+ A+I GYL R +E+ + M+ ++ FT ++ A +
Sbjct: 103 FNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDV 162
Query: 89 DLGEWIK-TYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-------------------- 127
LG I I D+ GN++IDMY C +E +
Sbjct: 163 GLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISA 222
Query: 128 -------------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
KD +WT M+ G A + +A+ F +M ++ DE+
Sbjct: 223 YVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITL 282
Query: 169 VGVLSAC 175
+GV+SAC
Sbjct: 283 IGVISAC 289
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
V+ +A++ Y G V A + F M ER+ +++MI G+ R +A+ LF EM
Sbjct: 314 HSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEM 373
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK 100
+ I + T + +LTA ++ ++ G I ++K
Sbjct: 374 VKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEK 410
>gi|242079801|ref|XP_002444669.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
gi|241941019|gb|EES14164.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
Length = 581
Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 68/177 (38%), Positives = 115/177 (64%), Gaps = 9/177 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
++++S Y G V+ AR+ F M ER+ V WT+MI GY ++ +F+EA+ LF++MQ + +
Sbjct: 235 SSLISMYAKCGLVEDARKVFHGMHERNVVCWTSMISGYTQLGKFKEAVNLFRDMQITGMK 294
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
D+ TI +++++ A + ALDLG ++ Y D + + ++ N+LIDMY C D+ KA
Sbjct: 295 VDDGTIATVVSSCAQMGALDLGRYVHAYCDVHGLGKELSVKNSLIDMYSKCGDINKAHEI 354
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGVLSACTH 177
++D FSWT MI+G ++G +ALD+F+QM + P+EV ++GVL++C+H
Sbjct: 355 FCGLTKRDVFSWTAMIMGFTVNGLCSEALDLFAQMEGEGKVMPNEVTFLGVLTSCSH 411
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 10/183 (5%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPER--DYVLWTAMIDGYLRVNRFREALTLFQE 62
D ++++ Y + ARQ D P+ D V W +I GYLR +AL F +
Sbjct: 127 DTFVLNSLINMYSSCSYPATARQVLDSAPQGACDTVSWNTIISGYLRGGMPNKALQAFGQ 186
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M + D+ T+++ L A A + +G + + N + + G++LI MY C
Sbjct: 187 MVKEQVTLDDVTLLNALVASAKAGKVKVGRLCHSLVVVNGAGINCYMGSSLISMYAKCGL 246
Query: 123 VEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
VE A+K + WT+MI G G +A+++F M +K D+ V+S+
Sbjct: 247 VEDARKVFHGMHERNVVCWTSMISGYTQLGKFKEAVNLFRDMQITGMKVDDGTIATVVSS 306
Query: 175 CTH 177
C
Sbjct: 307 CAQ 309
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 10/114 (8%)
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK-- 128
D +++ +A + L ++ +G + + K + +D F N+LI+MY C+ A++
Sbjct: 92 DNYSLNIAFSATSRLPSVSVGAQLHSLSVKLGLVSDTFVLNSLINMYSSCSYPATARQVL 151
Query: 129 --------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
D SW T+I G G +KAL F QM++ + D+V + L A
Sbjct: 152 DSAPQGACDTVSWNTIISGYLRGGMPNKALQAFGQMVKEQVTLDDVTLLNALVA 205
>gi|225445484|ref|XP_002282063.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 533
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ N+DV+ WTA++ Y G V+ AR F+ MPER+ + W+A++ Y RV F+E L LF
Sbjct: 175 IPNRDVVLWTAMIDGYGKMGDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLF 234
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ MQ + M +E +VS+LTA A+L AL G W+ +Y + ++ AL+DMY C
Sbjct: 235 RRMQEAGTMPNESVLVSVLTACAHLGALAQGLWVHSYAKQCNFDSNPILATALVDMYSKC 294
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VE A KD +W MI G+A++G+ K+L++F++M+ +P E +V VL
Sbjct: 295 GCVESALSTFQGIPNKDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQPTETTFVAVL 354
Query: 173 SACTH 177
+ACTH
Sbjct: 355 TACTH 359
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G V+ A F +P +D W AMI G ++L LF +M ++
Sbjct: 285 TALVDMYSKCGCVESALSTFQGIPNKDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQ 344
Query: 70 GDEFTIVSILTARANLRALDLG 91
E T V++LTA + R + G
Sbjct: 345 PTETTFVAVLTACTHARLVKEG 366
>gi|449443656|ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Cucumis sativus]
Length = 525
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 112/182 (61%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
K+ +SW +++ ++ G++++A Q FD+MP RD + WTA+I+G L+ +AL F +M
Sbjct: 159 KNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQM 218
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
Q S + D +I+++L A A+L AL LG W+ ++ + K++I N+LIDMY C +
Sbjct: 219 QRSGVAADYVSIIAVLAACADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCI 278
Query: 124 E--------KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E A++ SW ++IVG A++G D++L+ F M + KPD V+Y G L+AC
Sbjct: 279 EFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFYAMQKEGFKPDGVSYTGALTAC 338
Query: 176 TH 177
+H
Sbjct: 339 SH 340
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 74/180 (41%), Gaps = 42/180 (23%)
Query: 38 VLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL--RALDLGEWIK 95
VLWT+ + Y R + EA F M+ + + + T +++L+A A+ + +
Sbjct: 58 VLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLH 117
Query: 96 TYIDKNKV-KNDIFAGNALIDMYCICADVEKAQK-------------------------- 128
Y K + + G ALIDMY CA + A+K
Sbjct: 118 GYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEI 177
Query: 129 -------------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
D SWT +I GL G ++AL+ F QM R+ + D V+ + VL+AC
Sbjct: 178 ELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAAC 237
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 30/170 (17%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFR-EALTLFQEMQTSNIM 69
+++ Y G ++ ARQ F +M +R V W ++I G+ VN F E+L F MQ
Sbjct: 267 SLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGF-AVNGFADESLEFFYAMQKEGFK 325
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
D + LTA ++ ++ G E +K+ I ++D+Y
Sbjct: 326 PDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLY----------- 374
Query: 129 DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC-TH 177
+G + AL+M +M +KP+EV +L+AC TH
Sbjct: 375 ------------GRAGRLEDALNMIEEM---PMKPNEVVLGSLLAACRTH 409
>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
Length = 694
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 69/177 (38%), Positives = 111/177 (62%), Gaps = 8/177 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ Y G++ AR+ FD M RD V W+AMI GY + ++ REAL LF EMQ + +
Sbjct: 260 TALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVE 319
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
++ T+VS+L+A A L AL+ G+W+ +Y+ + ++ G AL+D Y C ++ A
Sbjct: 320 PNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEA 379
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
K+ ++WT +I G+A +G G +AL++FS M A I+P +V ++GVL AC+H+
Sbjct: 380 FESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHS 436
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 54/174 (31%), Positives = 94/174 (54%), Gaps = 8/174 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
++++ Y + G V AR FD E V+W A++ YL+ + E + +F+ M +
Sbjct: 159 SSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVA 218
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-- 127
DE T+VS++TA + LG+W+ ++D+ + + AL+DMY C ++ KA+
Sbjct: 219 FDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRL 278
Query: 128 ------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+D +W+ MI G + +AL +FS+M A ++P++V V VLSAC
Sbjct: 279 FDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSAC 332
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 10/146 (6%)
Query: 40 WTAMIDGYLRVNRFREALTLFQEM--QTSNIMGDEFTIVSILTARANLRALDLGEWIKTY 97
+ ++ +L +AL LF EM S D+ T L + + + ALD+G ++ Y
Sbjct: 86 YNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGVQAY 145
Query: 98 IDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKA 149
K + D F ++LI MY C DV A + W ++ +G+ +
Sbjct: 146 AVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEV 205
Query: 150 LDMFSQMLRASIKPDEVAYVGVLSAC 175
++MF ML + DEV V V++AC
Sbjct: 206 VEMFKGMLEVGVAFDEVTLVSVVTAC 231
>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 535
Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats.
Identities = 72/186 (38%), Positives = 111/186 (59%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ ++V SW ++S Y G V AR+ FD MP +D V W AM+ Y V + E L +F
Sbjct: 202 MEERNVESWNFMISGYAAAGLVKEAREVFDSMPVKDVVSWNAMVTAYAHVGCYNEVLEVF 261
Query: 61 QEM-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
M S D FT+V++L+A A+L +L GEW+ YIDK+ ++ + F AL+DMY
Sbjct: 262 NMMLDDSAERPDGFTLVNVLSACASLGSLSQGEWVHVYIDKHGIEIEGFVATALVDMYSK 321
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C ++KA ++D +W ++I GL++ G G AL++FS+M+ KP+ + ++GV
Sbjct: 322 CGKIDKALEVFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMVYEGFKPNGITFIGV 381
Query: 172 LSACTH 177
LSAC H
Sbjct: 382 LSACNH 387
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 49/172 (28%), Positives = 70/172 (40%), Gaps = 32/172 (18%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV +++ Y G +IAR+ D+MP RD V W +++ YL EA LF EM+
Sbjct: 144 DVFVENTLINVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLDKGLVEEARALFDEME 203
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
N+ F I + A L + + D V
Sbjct: 204 ERNVESWNFMI-------SGYAAAGLVKEAREVFDSMPV--------------------- 235
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI-KPDEVAYVGVLSAC 175
KD SW M+ A G ++ L++F+ ML S +PD V VLSAC
Sbjct: 236 ---KDVVSWNAMVTAYAHVGCYNEVLEVFNMMLDDSAERPDGFTLVNVLSAC 284
Score = 43.5 bits (101), Expect = 0.030, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 56 ALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID 115
ALT+F+EM + D+++ +L A A + G I K+ + D+F N LI+
Sbjct: 94 ALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFMKSDLVTDVFVENTLIN 153
Query: 116 MYCICADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQM 156
+Y E A+K D SW +++ G ++A +F +M
Sbjct: 154 VYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLDKGLVEEARALFDEM 202
Score = 40.4 bits (93), Expect = 0.29, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 39/80 (48%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G++D A + F +RD W ++I G ++AL +F EM
Sbjct: 313 TALVDMYSKCGKIDKALEVFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMVYEGFK 372
Query: 70 GDEFTIVSILTARANLRALD 89
+ T + +L+A ++ LD
Sbjct: 373 PNGITFIGVLSACNHVGLLD 392
>gi|225423493|ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 536
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 112/180 (62%), Gaps = 8/180 (4%)
Query: 7 ISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTS 66
+SWT ++S Y G V+ AR FD+ P +D +W ++I GY++ N F+E L +F+ MQ++
Sbjct: 172 VSWTVMISGYAKVGDVETARMLFDEAPMKDRGIWGSIISGYVQNNCFKEGLQMFRLMQST 231
Query: 67 NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126
+ DE +VSIL A A+L A+++G W+ Y+D+ + LIDMY C ++ A
Sbjct: 232 GLEPDEAILVSILCACAHLGAMEIGVWVHRYLDQLGHPLSVRLSTGLIDMYAKCGSLDIA 291
Query: 127 --------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
Q+D W MI G+A++G+GD AL +FS+M +A +KPD++ ++ + +AC+++
Sbjct: 292 KKLFDGMSQRDTICWNAMISGMAMNGDGDNALRLFSEMEKAGVKPDDITFIAIFTACSYS 351
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 74/198 (37%), Gaps = 39/198 (19%)
Query: 19 RGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSI 78
G + A + F Q+ + MI ++ + + ++ +M + + D +T+ +
Sbjct: 52 HGSLPHAWKLFQQIQHPTICICNTMIKAFVLKGKLINTIQIYSQMLENGLYPDNYTLPYV 111
Query: 79 LTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDK 130
L A A L++ LGE K DIF GN LI MY +V A+
Sbjct: 112 LKACAGLQSCHLGESAHGQSVKLGFWFDIFVGNTLIAMYSSFGNVRAARCIFDEMPWHTA 171
Query: 131 FSWTTMIVGLAISGNGDKA-------------------------------LDMFSQMLRA 159
SWT MI G A G+ + A L MF M
Sbjct: 172 VSWTVMISGYAKVGDVETARMLFDEAPMKDRGIWGSIISGYVQNNCFKEGLQMFRLMQST 231
Query: 160 SIKPDEVAYVGVLSACTH 177
++PDE V +L AC H
Sbjct: 232 GLEPDEAILVSILCACAH 249
>gi|413925046|gb|AFW64978.1| hypothetical protein ZEAMMB73_457124 [Zea mays]
Length = 592
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 67/177 (37%), Positives = 116/177 (65%), Gaps = 9/177 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
++++S Y G V+ AR+ F M ER+ V WT+MI GY ++ +F++A+ LF++MQ + +
Sbjct: 99 SSLISMYAKCGLVEDARKVFHGMHERNVVCWTSMISGYTQLGKFKKAVDLFRDMQITGMK 158
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
D+ TI +++++ A + ALDLG ++ Y D + + ++ N+LIDMY C D+ KA
Sbjct: 159 ADDGTIATVVSSCAQMGALDLGRYVHAYCDVHGLGKELSVKNSLIDMYSKCGDITKAHEI 218
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGVLSACTH 177
++D FSWT MI+G ++G ++ALD+F+QM + P+EV ++GVL++C+H
Sbjct: 219 FCGLTKRDVFSWTAMIMGFTVNGLCNEALDLFAQMEGEGKVMPNEVTFLGVLTSCSH 275
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 10/163 (6%)
Query: 25 ARQCFDQMPER--DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR 82
ARQ D P+ D V W +I GYLR +AL F +M + D+ T+++ L A
Sbjct: 11 ARQVLDSAPQGACDTVSWNTIISGYLRCGMPNKALQAFGQMVKEPVRLDDVTLLNALVAS 70
Query: 83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSWT 134
A +G + + N + + G++LI MY C VE A+K + WT
Sbjct: 71 AKAGKAKVGRLCHSLVVVNGAGINCYMGSSLISMYAKCGLVEDARKVFHGMHERNVVCWT 130
Query: 135 TMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+MI G G KA+D+F M +K D+ V+S+C
Sbjct: 131 SMISGYTQLGKFKKAVDLFRDMQITGMKADDGTIATVVSSCAQ 173
>gi|357503973|ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355497290|gb|AES78493.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 541
Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 116/187 (62%), Gaps = 12/187 (6%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+DV+SW ++V Y+ G+V++A F +M R+ + W ++I G ++ +E+L +F EM
Sbjct: 193 RDVVSWNSMVVGYLRNGEVEMALNLFRKMNGRNIITWNSIITGLVQAGHAKESLEIFHEM 252
Query: 64 QTSN----IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
Q + + D+ TI S+L+A A L ++D G+W+ Y+ KN ++ D+ G AL++MY
Sbjct: 253 QFLSGDDVVKPDKITIASVLSACALLGSIDHGKWVHAYLRKNDIECDVVIGTALVNMYGK 312
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C DV++A +KD +WT MI A+ G G KA D F +M +A +KP+ V +VG+
Sbjct: 313 CGDVQQAIEIFNDMPEKDASAWTAMISVFALHGFGKKAFDCFLEMEKAGVKPNHVTFVGL 372
Query: 172 LSACTHN 178
LSAC+H+
Sbjct: 373 LSACSHS 379
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 10/151 (6%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+ TA+V+ Y G V A + F+ MPE+D WTAMI + ++A F EM+
Sbjct: 299 DVVIGTALVNMYGKCGDVQQAIEIFNDMPEKDASAWTAMISVFALHGFGKKAFDCFLEME 358
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEW----------IKTYIDKNKVKNDIFAGNALI 114
+ + + T V +L+A ++ ++ G I+ I DI + L
Sbjct: 359 KAGVKPNHVTFVGLLSACSHSGLVEQGRCCFDVMKRVYSIEPQIYHYACMVDILSRARLF 418
Query: 115 DMYCICADVEKAQKDKFSWTTMIVGLAISGN 145
D + D + W ++ G + GN
Sbjct: 419 DEALFLIRSMPMKPDVYVWGALLGGCQMHGN 449
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 85/211 (40%), Gaps = 50/211 (23%)
Query: 16 YINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRV------NRFREALTLFQEMQTSNIM 69
+ N + A F + + ++ MI Y + N +AL L+++M I+
Sbjct: 66 FSNYASFNYANNVFHMIKYPELRVYNIMIRSYGCIEGGDDSNCCYKALMLYKQMLNKGIV 125
Query: 70 GDEFTIVSILTARANLR-ALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
+ T ++ + L+ +GE I ++ K ND+F GN+LI ++ + A+K
Sbjct: 126 PNNLTFPFLVKGCSRLQYGGTVGEVIHAHVLKFGFLNDVFVGNSLISLFMNFGLSKNARK 185
Query: 129 --------DKFSWTTMIV-------------------------------GLAISGNGDKA 149
D SW +M+V GL +G+ ++
Sbjct: 186 VFDEMFVRDVVSWNSMVVGYLRNGEVEMALNLFRKMNGRNIITWNSIITGLVQAGHAKES 245
Query: 150 LDMFSQMLRAS----IKPDEVAYVGVLSACT 176
L++F +M S +KPD++ VLSAC
Sbjct: 246 LEIFHEMQFLSGDDVVKPDKITIASVLSACA 276
>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
Length = 534
Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 110/185 (59%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DVISW +++S Y GQ+ A+ F M ++ V WTAMI GY + + EA+ F
Sbjct: 170 MYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFF 229
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ + I DE +++S+L + A L +L+LG+WI Y ++ NALI+MY C
Sbjct: 230 REMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKC 289
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ +A KD SW+TMI G A GN A++ F++M RA +KP+ + ++G+L
Sbjct: 290 GVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLL 349
Query: 173 SACTH 177
SAC+H
Sbjct: 350 SACSH 354
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 40/194 (20%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-QTSNIMGDEFTIVSILT 80
+D A + F+Q+ + L+ ++I Y + + + + +++++ + S + D FT +
Sbjct: 58 MDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFK 117
Query: 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK------------ 128
+ A+L + LG+ + ++ K + + NALIDMY D+ A K
Sbjct: 118 SCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVIS 177
Query: 129 -------------------------DK--FSWTTMIVGLAISGNGDKALDMFSQMLRASI 161
DK SWT MI G G +A+D F +M A I
Sbjct: 178 WNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGI 237
Query: 162 KPDEVAYVGVLSAC 175
+PDE++ + VL +C
Sbjct: 238 EPDEISLISVLPSC 251
>gi|255564603|ref|XP_002523296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537384|gb|EEF39012.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 353
Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 117/185 (63%), Gaps = 11/185 (5%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+D+ +W A+++ Y G ++ A + F MP+R+ V WTAMI GY + R+ +AL LF +M
Sbjct: 146 RDIPTWNALIAGYSRCGDMEGALKIFKLMPDRNVVSWTAMISGYSQNGRYAKALELFLKM 205
Query: 64 QTSN-IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ N + +E TI SIL A ANL AL++G+ I+TY +N + +++ NAL++MY C
Sbjct: 206 EKENGLRPNEVTIASILPACANLGALEVGDRIETYARENGLLRNLYVSNALLEMYARCGK 265
Query: 123 VEKAQK--DKF--------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ A+K DK SW +MI+GLAI G AL ++++ML I PD+V +VG+L
Sbjct: 266 IDMARKVFDKIIGKRRNLCSWNSMIMGLAIHGRSHDALHLYNRMLIEGIAPDDVTFVGIL 325
Query: 173 SACTH 177
ACTH
Sbjct: 326 LACTH 330
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 40/204 (19%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
+ R I V A + D +P + L+ +I Y N+ + +++ +M++ N G+
Sbjct: 22 LTERLIQIPNVPYAHKLIDLIPSPNVFLYNKLIQAYSFQNQLHQCFSIYSQMRSRNCTGN 81
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI------------ 119
+ T + A A+ + + + T+ K+ ++D+ A AL+DMYC
Sbjct: 82 QHTFTFLFAACASFFSPLHAQMLHTHFKKSGFESDVIALTALVDMYCKLGMVAFAHRVFD 141
Query: 120 -------------------CADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDM 152
C D+E A K + SWT MI G + +G KAL++
Sbjct: 142 EIPVRDIPTWNALIAGYSRCGDMEGALKIFKLMPDRNVVSWTAMISGYSQNGRYAKALEL 201
Query: 153 FSQMLRAS-IKPDEVAYVGVLSAC 175
F +M + + ++P+EV +L AC
Sbjct: 202 FLKMEKENGLRPNEVTIASILPAC 225
>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 600
Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 116/185 (62%), Gaps = 10/185 (5%)
Query: 4 KDVISWTAIVSRYINRGQ--VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
+DV ++ Y G+ + A + FD P+ D V W+AMI G++R+ A+ LF+
Sbjct: 158 EDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPKMDTVTWSAMIAGFVRLGCSSRAVDLFR 217
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
EMQ + DE T+VS+L+A A+L AL+LG+W+++Y++K + + NALIDM+ C
Sbjct: 218 EMQVMGVCPDEITMVSVLSACADLGALELGKWVESYVEKKNIPKSVELCNALIDMFAKCG 277
Query: 122 DVEKA-----QKDK---FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+V+KA Q D SWT++I GLA+ G G A+ +F +M+ I PD+VA++GVLS
Sbjct: 278 NVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAVSLFDEMVENGITPDDVAFIGVLS 337
Query: 174 ACTHN 178
AC+H+
Sbjct: 338 ACSHS 342
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 11/154 (7%)
Query: 33 PERDYVLWTAMIDGYLRVNRFRE-ALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLG 91
P D L+ +I Y + + + ++ M + ++FT +L A + +L LG
Sbjct: 85 PSYDAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLG 144
Query: 92 EWIKTYIDKNKVKNDIFAGNALIDMYCICAD--VEKAQK--------DKFSWTTMIVGLA 141
+ + + K + D+ N LI MYC + E A+K D +W+ MI G
Sbjct: 145 KCVHGCVVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPKMDTVTWSAMIAGFV 204
Query: 142 ISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
G +A+D+F +M + PDE+ V VLSAC
Sbjct: 205 RLGCSSRAVDLFREMQVMGVCPDEITMVSVLSAC 238
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 10/151 (6%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
K V A++ + G VD A + F QM R V WT++I G R +A++LF EM
Sbjct: 261 KSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAVSLFDEM 320
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN-KVKNDIFAGNALIDMYCICAD 122
+ I D+ + +L+A ++ +D G + +++N + + ++D+ C
Sbjct: 321 VENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVEHYGCMVDLLCRGGF 380
Query: 123 VEKA----QKDKFS-----WTTMIVGLAISG 144
V++A QK F W T+I +G
Sbjct: 381 VKEAFEFVQKMPFEPNQIIWRTIITACHATG 411
>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats.
Identities = 74/184 (40%), Positives = 107/184 (58%), Gaps = 10/184 (5%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDY--VLWTAMIDGYLRVNRFREALTLFQE 62
D S ++ Y+N ++ AR+ FD MP+RD V W AMI Y++ NR EA LF
Sbjct: 128 DGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDR 187
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M+ N++ D+F S+L+A L AL+ G+WI YI+K+ ++ D +IDMYC C
Sbjct: 188 MRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGC 247
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+EKA QK SW MI GLA+ G G+ A+++F +M R + PD + +V VLSA
Sbjct: 248 LEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSA 307
Query: 175 CTHN 178
C H+
Sbjct: 308 CAHS 311
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 10/141 (7%)
Query: 46 GYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKN 105
GYLR R + ++ M ++ ++FT ++ A A++ G+ I ++ K
Sbjct: 68 GYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGA 127
Query: 106 DIFAGNALIDMYCICADVEKA--------QKDK--FSWTTMIVGLAISGNGDKALDMFSQ 155
D F+ N LI MY +E+A Q+D+ SW MI S +A +F +
Sbjct: 128 DGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDR 187
Query: 156 MLRASIKPDEVAYVGVLSACT 176
M ++ D+ +LSACT
Sbjct: 188 MRLENVVLDKFVAASMLSACT 208
>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
Length = 614
Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats.
Identities = 73/186 (39%), Positives = 107/186 (57%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW+ +VS Y +G +++AR FD+MP ++ V WT M+ + EA LF
Sbjct: 251 MPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLF 310
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M+ +++ D +VSIL A A +L LG+ I Y+ K + NALIDM+C C
Sbjct: 311 AQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKC 370
Query: 121 A---------DVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
D E QKD SW ++I G A+ G+GDKAL++F+QM + PD V + V
Sbjct: 371 GCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINV 430
Query: 172 LSACTH 177
LSACTH
Sbjct: 431 LSACTH 436
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 31/178 (17%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW ++ + G++ R+ FD+MPE+D V W ++DGY + A LF
Sbjct: 189 MPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELF 248
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
Q M N++ T+VS + +L E + DK KN +
Sbjct: 249 QRMPERNVVSWS-TMVSGYCKKGDL------EMARVIFDKMPSKNLV------------- 288
Query: 121 ADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+WT M+ A G D+A +F+QM AS++ D A V +L+AC +
Sbjct: 289 -----------TWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAES 335
>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 639
Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats.
Identities = 73/186 (39%), Positives = 106/186 (56%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW+ +VS Y +G +++AR FD+MP ++ V WT M+ + EA LF
Sbjct: 276 MPERNVVSWSTVVSGYCKKGDIEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGRLF 335
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M+ + + D +VSIL A A +L LG+ I Y+ ++ NA+IDM+C C
Sbjct: 336 TQMKEAAVELDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNAMIDMFCKC 395
Query: 121 A---------DVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
D E A+KD SW T+I G A+ G+GDKALD F+QM +PD V + V
Sbjct: 396 GCVNRADYVFDTEIAEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFRPDAVTMINV 455
Query: 172 LSACTH 177
LSACTH
Sbjct: 456 LSACTH 461
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 31/178 (17%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D +SW + ++ + +G+V AR+ FD+MP++D V W ++DGY + + +A LF
Sbjct: 214 MPRRDTVSWNSAMAAMVRQGEVASARRMFDEMPDKDTVSWNTVLDGYTKAGKMEDAFELF 273
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
Q M N++ T+VS + ++ E + DK KN +
Sbjct: 274 QCMPERNVVSWS-TVVSGYCKKGDI------EMARVIFDKMPTKNLV------------- 313
Query: 121 ADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+WT M+ A +G ++A +F+QM A+++ D A V +L+AC +
Sbjct: 314 -----------TWTIMVSACAQNGLVEEAGRLFTQMKEAAVELDVAAVVSILAACAES 360
Score = 37.7 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 37/166 (22%), Positives = 72/166 (43%), Gaps = 26/166 (15%)
Query: 11 AIVSRYINRGQVDIARQCFD-QMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
A++ + G V+ A FD ++ E+D V W +I G+ +AL F +M+
Sbjct: 387 AMIDMFCKCGCVNRADYVFDTEIAEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFR 446
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
D T++++L+A ++ ++ G + ++++ Y I +E
Sbjct: 447 PDAVTMINVLSACTHMGFVEEGRQHFSNMERD---------------YGIVPQIEH---- 487
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ MI L G ++A+ + M P+EV + +LSAC
Sbjct: 488 ---YGCMIDLLGRGGLIEEAVGLIKSM---PWDPNEVIWGSLLSAC 527
>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 491
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 107/186 (57%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW+ +VS Y +G +++AR FD+MP ++ V WT M+ + EA LF
Sbjct: 128 MPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLF 187
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M+ +++ D +VSIL A A +L LG+ I Y+ K + NALIDM+C C
Sbjct: 188 AQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKC 247
Query: 121 A---------DVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
D E QKD SW ++I G A+ G+GDKAL++F+QM + PD V + V
Sbjct: 248 GCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINV 307
Query: 172 LSACTH 177
LSACTH
Sbjct: 308 LSACTH 313
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 31/178 (17%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW ++ + G++ R+ FD+MPE+D V W ++DGY + A LF
Sbjct: 66 MPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELF 125
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
Q M N++ T+VS + +L E + DK KN +
Sbjct: 126 QRMPERNVVSWS-TMVSGYCKKGDL------EMARVIFDKMPSKNLV------------- 165
Query: 121 ADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+WT M+ A G D+A +F+QM AS++ D A V +L+AC +
Sbjct: 166 -----------TWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAES 212
>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 585
Score = 145 bits (367), Expect = 5e-33, Method: Composition-based stats.
Identities = 68/185 (36%), Positives = 115/185 (62%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D++SW ++ Y RG V +AR+ FD +RD W++MI Y + +EAL L+
Sbjct: 142 MSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELW 201
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EM+ + + D ++VS+L+A + + AL +G + +++ N+V+ D+ G AL+DMY C
Sbjct: 202 REMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKC 261
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
D+E + KD +W++MI+GLA G G AL +FS+M+ ++P+E+ ++GVL
Sbjct: 262 GDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVL 321
Query: 173 SACTH 177
ACTH
Sbjct: 322 IACTH 326
Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/166 (23%), Positives = 79/166 (47%), Gaps = 25/166 (15%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G ++ + + F MP +D + W++MI G +AL+LF EM + +
Sbjct: 252 TALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQ 311
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
+E T + +L A ++ ++ G K Y +++ D++ + +E
Sbjct: 312 PNEITFIGVLIACTHVGLVNDG---KKYF------------SSMSDVHGVVPRMEH---- 352
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ L +G+ ++A+++ M + KPD + + +L AC
Sbjct: 353 ---YGCMVDLLGRAGHVEEAMELIRSM---TFKPDPIIWRTLLGAC 392
>gi|147810325|emb|CAN65024.1| hypothetical protein VITISV_026273 [Vitis vinifera]
Length = 805
Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ N+DV+ WTA++ Y G V+ AR F+ MPER+ + W+A++ Y RV F+E L LF
Sbjct: 447 IPNRDVVLWTAMIDGYGKMGDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLF 506
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ MQ + M +E +VS+LTA A+L AL G W+ +Y + ++ AL+DMY C
Sbjct: 507 RRMQEAGTMPNESVLVSVLTACAHLGALAQGLWVHSYAKQCNFDSNPILATALVDMYSKC 566
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VE A KD +W MI G+A++G+ K+L++F++M+ +P E +V VL
Sbjct: 567 GCVESALSTFQGIPNKDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQPTETTFVAVL 626
Query: 173 SACTH 177
+ACTH
Sbjct: 627 TACTH 631
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G V+ A F +P +D W AMI G ++L LF +M ++
Sbjct: 557 TALVDMYSKCGCVESALSTFQGIPNKDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQ 616
Query: 70 GDEFTIVSILTARANLRALDLG 91
E T V++LTA + R + G
Sbjct: 617 PTETTFVAVLTACTHARLVREG 638
>gi|449469438|ref|XP_004152427.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 528
Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 110/183 (60%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
KDV+ WT +V Y G ++ AR FD+MPER+ + W+AM+ Y RV+ FRE L LF++
Sbjct: 174 GKDVVVWTVMVDGYGKVGDIESARVLFDEMPERNVISWSAMMAAYSRVSDFREVLCLFRQ 233
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
MQ NI+ ++ I S+LTA A+L A+ G W+ +Y + + ++ AL+DMY C
Sbjct: 234 MQKKNIVPNDSVIASVLTACAHLGAITQGLWMHSYAKRYGLDSNPILATALVDMYSKCGY 293
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+E A KD +W MI G A++GN K+L++F +M+ + + E +V +L+A
Sbjct: 294 IESALEVFEGISNKDAGAWNAMISGFAMTGNVVKSLELFDKMIASGTQATEATFVSILAA 353
Query: 175 CTH 177
CTH
Sbjct: 354 CTH 356
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G ++ A + F+ + +D W AMI G+ ++L LF +M S
Sbjct: 282 TALVDMYSKCGYIESALEVFEGISNKDAGAWNAMISGFAMTGNVVKSLELFDKMIASGTQ 341
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
E T VSIL A + + ++ G E+ +V+ ++D+ VE A+K
Sbjct: 342 ATEATFVSILAACTHAKMVERGLEFFDQMYPVYRVQPQFEHYACVVDLMARAGMVEDAEK 401
>gi|297724409|ref|NP_001174568.1| Os06g0114366 [Oryza sativa Japonica Group]
gi|218197444|gb|EEC79871.1| hypothetical protein OsI_21372 [Oryza sativa Indica Group]
gi|255676656|dbj|BAH93296.1| Os06g0114366 [Oryza sativa Japonica Group]
Length = 509
Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 107/182 (58%), Gaps = 9/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMP-ERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
DV++W A+V Y G A + F +MP +++ V W M+ + R EAL LFQEM
Sbjct: 187 DVVAWNALVDMYAKCGDAAAAHRWFRRMPVKKNVVSWNTMMSAFARAGELEEALALFQEM 246
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
Q + + D+ T V+ L A A L ALD G W+ Y+ + D GNAL+DMY C V
Sbjct: 247 QAAAVRPDDATFVAALGACAQLGALDTGRWLHAYMGRMGHSADGVVGNALLDMYAKCGAV 306
Query: 124 EK--------AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
++ A++D +++T+MI+GLA+ G G+ AL +F+ M RA + P+EV +GVL+AC
Sbjct: 307 DQATEVFDGMARRDVYTYTSMILGLAMHGRGEDALSLFAGMQRAGVTPNEVTLLGVLTAC 366
Query: 176 TH 177
H
Sbjct: 367 CH 368
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 86/177 (48%), Gaps = 11/177 (6%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPE-RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN-I 68
+V Y+ RG++ AR D P RD V TAM+ G+ R EA+ LF M +
Sbjct: 90 GLVELYLARGELASARALVDGFPAGRDVVSCTAMVTGHARHGFLDEAVVLFFAMADDRCV 149
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA-- 126
D + +A A + L LG + + KV D+ A NAL+DMY C D A
Sbjct: 150 AIDAVAAAAAFSACAQIGDLALGREAHRRVAERKVAMDVVAWNALVDMYAKCGDAAAAHR 209
Query: 127 -------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+K+ SW TM+ A +G ++AL +F +M A+++PD+ +V L AC
Sbjct: 210 WFRRMPVKKNVVSWNTMMSAFARAGELEEALALFQEMQAAAVRPDDATFVAALGACA 266
>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
Length = 566
Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 116/185 (62%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK +++++ A+++ Y + AR+ FDQ+P++D + W++MI GY + N F +AL +F
Sbjct: 249 MKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIF 308
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++MQ + + D I S++++ A+L ALDLG+W+ Y+ +N +K D N+LIDMY C
Sbjct: 309 RQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKC 368
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++A +KD SW ++I+GLA +G ++L++F ML +P+ V ++GVL
Sbjct: 369 GSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVL 428
Query: 173 SACTH 177
AC +
Sbjct: 429 IACAN 433
Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 100/212 (47%), Gaps = 39/212 (18%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ +++ Y G + AR FD+M +D V W ++I GY + NRF++ L LF+ MQ
Sbjct: 121 DIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQ 180
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID--------- 115
+ D+ T++ +++A L + +++ YI+ ++ D++ GN L+D
Sbjct: 181 NEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQ 240
Query: 116 ----------------MYCICADVEKAQ--------------KDKFSWTTMIVGLAISGN 145
M + A K Q KD SW++MI G + + +
Sbjct: 241 SAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANH 300
Query: 146 GDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
AL++F QM RA +KPD + V+S+C H
Sbjct: 301 FSDALEIFRQMQRAKVKPDAIVIASVVSSCAH 332
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 8/160 (5%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A + FDQ+ LW +I G + + +A+ +++ Q ++ D T IL A A
Sbjct: 40 AHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACAR 99
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKFSWTTM 136
+ AL+ GE + +I K + +DIF N+LI +Y C ++ E KD SW ++
Sbjct: 100 INALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSL 159
Query: 137 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
I G + L +F M +K D+V + V+SACT
Sbjct: 160 ICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACT 199
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 26/174 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D I +++ Y+ G A Q F +M E+D + W ++I G +E+L LFQ M
Sbjct: 354 DTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAML 413
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
T + T + +L A AN + ++ G +D + +++ + Y D+
Sbjct: 414 TEGFRPNGVTFLGVLIACANAKLVEEG------LDHFESMKRLYSLEPQMKHYGCVVDL- 466
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC-TH 177
L +G +KAL ++M I PD V + +L +C TH
Sbjct: 467 ---------------LGRAGQLEKALRFITEM---PIDPDPVVWRILLGSCNTH 502
>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Glycine max]
Length = 629
Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats.
Identities = 71/185 (38%), Positives = 114/185 (61%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV++ T ++ + G V+ A + F++M RD V WT +IDG +R F L +F
Sbjct: 186 MPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVF 245
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ + +E T V +L+A A L AL+LG WI Y+ K V+ + F ALI+MY C
Sbjct: 246 REMQVKGVEPNEVTFVCVLSACAQLGALELGRWIHAYMRKCGVEVNRFVAGALINMYSRC 305
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
D+++AQ KD ++ +MI GLA+ G +A+++FS+ML+ ++P+ + +VGVL
Sbjct: 306 GDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEAVELFSEMLKERVRPNGITFVGVL 365
Query: 173 SACTH 177
+AC+H
Sbjct: 366 NACSH 370
Score = 69.3 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 47/201 (23%), Positives = 87/201 (43%), Gaps = 39/201 (19%)
Query: 16 YINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTI 75
Y +D A + F + L+T++IDG++ + +A+ LF +M +++ D + +
Sbjct: 69 YCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSFGSYTDAINLFCQMVRKHVLADNYAV 128
Query: 76 VSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK------- 128
++L A RAL G+ + + K+ + D L+++Y C +E A+K
Sbjct: 129 TAMLKACVLQRALGSGKEVHGLVLKSGLGLDRSIALKLVELYGKCGVLEDARKMFDGMPE 188
Query: 129 --------------------------------DKFSWTTMIVGLAISGNGDKALDMFSQM 156
D WT +I GL +G ++ L++F +M
Sbjct: 189 RDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREM 248
Query: 157 LRASIKPDEVAYVGVLSACTH 177
++P+EV +V VLSAC
Sbjct: 249 QVKGVEPNEVTFVCVLSACAQ 269
Score = 41.6 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 25/165 (15%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+++ Y G +D A+ FD + +D + +MI G + EA+ LF EM +
Sbjct: 297 ALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEAVELFSEMLKERVRP 356
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDK 130
+ T V +L A ++ +DLG +IF +I + I +VE
Sbjct: 357 NGITFVGVLNACSHGGLVDLG-------------GEIFESMEMI--HGIEPEVEH----- 396
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ L G ++A D +M ++ D+ +LSAC
Sbjct: 397 --YGCMVDILGRVGRLEEAFDFIGRM---GVEADDKMLCSLLSAC 436
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 100 KNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTMIVGLAISGNGDKALD 151
K + D F L+ +YC ++ A K + + +T++I G G+ A++
Sbjct: 52 KTRTSQDPFVAFELLRVYCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSFGSYTDAIN 111
Query: 152 MFSQMLRASIKPDEVAYVGVLSAC 175
+F QM+R + D A +L AC
Sbjct: 112 LFCQMVRKHVLADNYAVTAMLKAC 135
>gi|242037745|ref|XP_002466267.1| hypothetical protein SORBIDRAFT_01g004770 [Sorghum bicolor]
gi|241920121|gb|EER93265.1| hypothetical protein SORBIDRAFT_01g004770 [Sorghum bicolor]
Length = 537
Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats.
Identities = 76/189 (40%), Positives = 107/189 (56%), Gaps = 12/189 (6%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K +SW A+V +YI V A + F MP+RD V W +I GY + RF EAL LF
Sbjct: 184 MPVKSTVSWNAMVHQYIRHSNVGDAYELFLAMPKRDVVSWNTIIAGYCLIGRFMEALELF 243
Query: 61 QEMQTSN---IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
++M + + + + TI ++L A A L+ G W+ YID+N++ +D +LIDMY
Sbjct: 244 RQMMSPSSCPVHPNGPTISTVLAACAGAGCLETGIWVHAYIDRNRMNDDGSLDRSLIDMY 303
Query: 118 CICADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
C +EKA ++D +SWTT+I GLA+ G AL MF M I+PD+V
Sbjct: 304 AKCGSIEKALQVFEKAPGKRDLYSWTTVICGLAMHGKAADALRMFGMMQDNGIRPDDVTL 363
Query: 169 VGVLSACTH 177
VGVL+AC H
Sbjct: 364 VGVLNACAH 372
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 50/218 (22%), Positives = 83/218 (38%), Gaps = 52/218 (23%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++S Y G+ AR FD+MP+ V TAM + + +AL +F +M ++
Sbjct: 51 TALLSAYAALGRPRHARDLFDEMPDPGLVTRTAMARAHAASGQTAQALAVFGDMLADGVL 110
Query: 70 GDEFTIV----------SILTARANLRALDLGEWIKTYIDKNKVKNDIFAG--------- 110
D + S A A G+ + I + + D+F
Sbjct: 111 PDNVALAVALAACHGTGSFPAALGMAAARRPGKMVHALIVTSGIVPDVFVSTELIRLYGE 170
Query: 111 ----------------------NALIDMYCICADVEKA--------QKDKFSWTTMIVGL 140
NA++ Y ++V A ++D SW T+I G
Sbjct: 171 YGELLVSRRLFDAMPVKSTVSWNAMVHQYIRHSNVGDAYELFLAMPKRDVVSWNTIIAGY 230
Query: 141 AISGNGDKALDMFSQMLRAS---IKPDEVAYVGVLSAC 175
+ G +AL++F QM+ S + P+ VL+AC
Sbjct: 231 CLIGRFMEALELFRQMMSPSSCPVHPNGPTISTVLAAC 268
Score = 44.3 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 11 AIVSRYINRGQVDIARQCFDQMP-ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+++ Y G ++ A Q F++ P +RD WT +I G + +AL +F MQ + I
Sbjct: 298 SLIDMYAKCGSIEKALQVFEKAPGKRDLYSWTTVICGLAMHGKAADALRMFGMMQDNGIR 357
Query: 70 GDEFTIVSILTARANLRALDLG 91
D+ T+V +L A A+ +D G
Sbjct: 358 PDDVTLVGVLNACAHGGLVDEG 379
>gi|326507168|dbj|BAJ95661.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 117/178 (65%), Gaps = 10/178 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
++++S Y GQV+ AR+ FD MP+R+ V WT+MI GY ++ + +EA+ LF++MQ + +
Sbjct: 235 SSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVK 294
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
D+ TI +++++ + ALDLG ++ Y D + + DI N+LIDMY C D++KA
Sbjct: 295 VDDATISTVVSSCGQMGALDLGRYVHAYCDIHGLGKDISVKNSLIDMYSKCGDIKKAYDI 354
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGVLSACTHN 178
++D FSW T+I+G A +G +ALD+F+QM + P+E+ ++GVL++C+H
Sbjct: 355 FCGMVKRDNFSW-TVIMGFAANGLSGEALDLFAQMEEEGGVMPNEITFLGVLTSCSHG 411
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 10/183 (5%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLF 60
+ D +++ Y + AR D P+ D V W +I GY+ +AL F
Sbjct: 125 SSDTFVLNTLINMYSSCSYPSTARSVLDSAPKGASDTVSWNTIIAGYIHAGLPNKALQAF 184
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M +M D+ T+++ L A A + +G+ + N + + + G++LI MY C
Sbjct: 185 SQMAKGQVMLDDVTLLNALVACARTCMMKVGKLCHALLVTNGFEINCYMGSSLISMYAKC 244
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VE A+ ++ WT+MI G G +A+ +F M A +K D+ V+
Sbjct: 245 GQVEDARRIFDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVKVDDATISTVV 304
Query: 173 SAC 175
S+C
Sbjct: 305 SSC 307
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA--------- 121
D +++ + L+ A + ++ +G + K + +D F N LI+MY C+
Sbjct: 92 DNYSLSAALSTAARMPSVVVGAQLHALSVKLGLSSDTFVLNTLINMYSSCSYPSTARSVL 151
Query: 122 -DVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
K D SW T+I G +G +KAL FSQM + + D+V + L AC
Sbjct: 152 DSAPKGASDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVAC 206
>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
Length = 580
Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 110/186 (59%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+K KD++SW IV+ G+++ AR F QMP RD V W +++ GY F L
Sbjct: 227 LKEKDIVSWNMIVAGCAKVGELEQARLFFYQMPCRDIVSWNSLVTGYACRGDFASVKELI 286
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M ++ D T++S+++A ALD G W ++ + ++K D F G+ALIDMYC C
Sbjct: 287 VDMVMEKVIPDTVTMISLVSAATESGALDQGRWAHGWVIRMQIKLDAFLGSALIDMYCKC 346
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E+A +KD WTTMI GLA G G KAL++FS+M + + PD+V +V VL
Sbjct: 347 GSIERASRVFKEINKKDVTVWTTMITGLAFHGYGSKALELFSEM-QEDVSPDDVTFVSVL 405
Query: 173 SACTHN 178
SAC+H+
Sbjct: 406 SACSHS 411
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 81/155 (52%), Gaps = 10/155 (6%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
++ Y+ G V +A Q F++MP D V + MI GY + EA+ LF EM + D
Sbjct: 104 LIKVYLENGLVRLAHQVFEKMPSPDIVSFNVMIVGYAKKGFGLEAMRLFHEMVGLGLEPD 163
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNK--VKNDIFAGNALIDMYCICADVEKA--- 126
EFTI+ +L + L + G+ + ++++ K + +++ GNAL+DMY C VE A
Sbjct: 164 EFTILGLLVSCGQLGNVKFGKAVHGWMERRKPTISSNLILGNALLDMYVKCQKVELALRT 223
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
+KD SW ++ G A G ++A F QM
Sbjct: 224 FGALKEKDIVSWNMIVAGCAKVGELEQARLFFYQM 258
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 78/163 (47%), Gaps = 13/163 (7%)
Query: 22 VDIARQCFDQM-PERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80
+D+A F+ P + ++ +I + + + E+ L+ + +S D+ T++ +L
Sbjct: 16 LDLAITLFNHFTPNPNLFIYNTLISAFSSLKKI-ESFYLYNVLLSSGECPDKQTLLYLLQ 74
Query: 81 A--------RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFS 132
A + + +A+ G + Y+ +K ++ N L+ + + + D S
Sbjct: 75 AVNFISQVKQIHCQAIVTGLFSFGYLQNTLIK--VYLENGLVRLAHQVFE-KMPSPDIVS 131
Query: 133 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ MIVG A G G +A+ +F +M+ ++PDE +G+L +C
Sbjct: 132 FNVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSC 174
>gi|356541012|ref|XP_003538978.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g50270-like [Glycine max]
Length = 560
Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 115/177 (64%), Gaps = 8/177 (4%)
Query: 9 WTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI 68
++A++ Y G + A + F+++P RD V WT ++ GY++ N+F++AL F +M + N+
Sbjct: 247 FSALMDMYFKCGHCEDACKVFNELPHRDVVCWTVLVAGYVQSNKFQDALRAFWDMLSDNV 306
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ- 127
++FT+ S+L+A A + ALD G + YI+ NK+ ++ G AL+DMY C +++A
Sbjct: 307 APNDFTLSSVLSACAQMGALDQGRLVHQYIECNKINMNVTLGTALVDMYAKCGSIDEALR 366
Query: 128 -------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
K+ ++WT +I GLA+ G+ AL++F ML++ I+P+EV +VGVL+AC+H
Sbjct: 367 VFENMPVKNVYTWTVIINGLAVHGDALGALNIFCCMLKSGIQPNEVTFVGVLAACSH 423
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 93/181 (51%), Gaps = 9/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ A++ + N G V+ ARQ FD+ P +D V WTA+I+GY++ + EAL F +M+
Sbjct: 141 DLFIGNALIPAFANSGFVESARQVFDESPFQDTVAWTALINGYVKNDCPGEALKCFVKMR 200
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKT-YIDKNKVKNDIFAGNALIDMYCICADV 123
+ D T+ SIL A A + D G W+ Y++ +V+ D + +AL+DMY C
Sbjct: 201 LRDRSVDAVTVASILRAAALVGDADFGRWVHGFYVEAGRVQLDGYVFSALMDMYFKCGHC 260
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E A +D WT ++ G S AL F ML ++ P++ VLSAC
Sbjct: 261 EDACKVFNELPHRDVVCWTVLVAGYVQSNKFQDALRAFWDMLSDNVAPNDFTLSSVLSAC 320
Query: 176 T 176
Sbjct: 321 A 321
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N +V TA+V Y G +D A + F+ MP ++ WT +I+G AL +F
Sbjct: 342 NMNVTLGTALVDMYAKCGSIDEALRVFENMPVKNVYTWTVIINGLAVHGDALGALNIFCC 401
Query: 63 MQTSNIMGDEFTIVSILTA 81
M S I +E T V +L A
Sbjct: 402 MLKSGIQPNEVTFVGVLAA 420
>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 616
Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 120/188 (63%), Gaps = 10/188 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M N+DV+SW ++++ Y+ G++++A++ F+ M ++D V WT+MI Y++ +AL LF
Sbjct: 170 MPNRDVVSWNSMIAGYLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLF 229
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVK-NDIFAGNALIDMYCI 119
+EM + + D IVS+L+A A+L ++ G+W+ Y+ NK++ + F G+ALIDMY
Sbjct: 230 REMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSK 289
Query: 120 CADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C +E A +++ W +MI GLAI G +ALD+F +M R I+P+E+ ++G
Sbjct: 290 CGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLG 349
Query: 171 VLSACTHN 178
+LS C+H
Sbjct: 350 LLSTCSHG 357
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 85/196 (43%), Gaps = 41/196 (20%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT--SNIMGDEFTIVS 77
G +D A F ++ + ++ A+I G+ + E+L L+ M + + G EF+I S
Sbjct: 55 GGLDYASSVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPS 114
Query: 78 ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KD 129
+L A L A D G + + K + D F GN+++ MY ++E A+ +D
Sbjct: 115 VLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRD 174
Query: 130 KFSWTTMIVGLAISGNGD-------------------------------KALDMFSQMLR 158
SW +MI G +G + KALD+F +ML
Sbjct: 175 VVSWNSMIAGYLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLS 234
Query: 159 ASIKPDEVAYVGVLSA 174
++PD A V VLSA
Sbjct: 235 LGLRPDGPAIVSVLSA 250
Score = 40.0 bits (92), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVL-WTAMIDGYLRVNRFREALTLFQEMQTSNI 68
+A++ Y G ++ A F + R + W +MI G REAL +F EM+ +I
Sbjct: 281 SALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDI 340
Query: 69 MGDEFTIVSILTARANLRALDLGE-WIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126
+E T + +L+ ++ ++ G+ + ++ +K K+ I +ID++ +E A
Sbjct: 341 EPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDA 399
>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
Length = 1031
Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 115/184 (62%), Gaps = 8/184 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK +++++ A+++ Y + AR+ FDQ+P++D + W++MI GY + N F +AL +F
Sbjct: 714 MKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIF 773
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++MQ + + D I S++++ A+L ALDLG+W+ Y+ +N +K D N+LIDMY C
Sbjct: 774 RQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKC 833
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++A +KD SW ++I+GLA +G ++L++F ML +P+ V ++GVL
Sbjct: 834 GSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVL 893
Query: 173 SACT 176
AC
Sbjct: 894 IACA 897
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 110/187 (58%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+ +SW +++ + G+V+ AR F++MP R+ V W+ MIDGY R R EA+ LF
Sbjct: 150 MPVKNAVSWNVVITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALF 209
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M I E T+++++ A +N+ + +GE + Y +K + D+ GN+LID+Y
Sbjct: 210 RRMMAEGISPSEITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKI 269
Query: 121 ADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
++ + +++ SWT++I G A+ G KA+++F+ M RA I+P+ + ++ V
Sbjct: 270 GSIQNSLRVFDEMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSV 329
Query: 172 LSACTHN 178
L AC+H
Sbjct: 330 LHACSHG 336
Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 100/212 (47%), Gaps = 39/212 (18%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ +++ Y G + AR FD+M +D V W ++I GY + NRF++ L LF+ MQ
Sbjct: 586 DIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQ 645
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ D+ T++ +++A L + +++ YI+ ++ D++ GN L+D + ++
Sbjct: 646 NEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQ 705
Query: 125 KAQ---------------------------------------KDKFSWTTMIVGLAISGN 145
A+ KD SW++MI G + + +
Sbjct: 706 SAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANH 765
Query: 146 GDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
AL++F QM RA +KPD + V+S+C H
Sbjct: 766 FSDALEIFRQMQRAKVKPDAIVIASVVSSCAH 797
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 8/161 (4%)
Query: 24 IARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARA 83
A + FDQ+ LW +I G + + +A+ +++ Q ++ D T IL A A
Sbjct: 504 FAHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACA 563
Query: 84 NLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKFSWTT 135
+ AL+ GE + +I K + +DIF N+LI +Y C ++ E KD SW +
Sbjct: 564 RINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNS 623
Query: 136 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+I G + L +F M +K D+V + V+SACT
Sbjct: 624 LICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACT 664
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 26/175 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D I +++ Y+ G A Q F +M E+D + W ++I G +E+L LFQ M
Sbjct: 819 DTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAML 878
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
T + T + +L A AN + ++ G +D + +++ + Y D+
Sbjct: 879 TEGFRPNGVTFLGVLIACANAKLVEEG------LDHFESMKRLYSLEPQMKHYGCVVDL- 931
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC-THN 178
L +G +KAL ++M I PD V + +L +C TH
Sbjct: 932 ---------------LGRAGQLEKALRFITEM---PIDPDPVVWRILLGSCNTHG 968
>gi|347954488|gb|AEP33744.1| chloroplast biogenesis 19, partial [Aethionema grandiflorum]
Length = 413
Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 109/185 (58%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++K+ ++W ++ Y+ G+VD A + FD+MP+ D + WTAMI+G+++ EAL F
Sbjct: 81 MEDKNSVTWNTMIDAYMRSGKVDRAVKLFDEMPDPDLISWTAMINGFVKKGFHEEALVWF 140
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ S + D I++ L A NL AL G W+ Y+ KN++ N+LID+YC C
Sbjct: 141 REMQISGVKPDYVAIIAALAACTNLGALSFGLWVHRYVLSQDFKNNVRVNNSLIDLYCRC 200
Query: 121 ADVEKAQK--DKF------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VE A++ DK SW ++IVG A +GN ++L F +M PD V + G L
Sbjct: 201 GCVEFAREVFDKMEKRTVVSWNSVIVGSAANGNAHESLVYFRKMQEEGFNPDAVTFTGAL 260
Query: 173 SACTH 177
+AC+H
Sbjct: 261 TACSH 265
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 28/170 (16%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y G V+ AR+ FD+M +R V W ++I G E+L F++MQ
Sbjct: 192 SLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGSAANGNAHESLVYFRKMQEEGFNP 251
Query: 71 DEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
D T LTA +++ ++ G ++ +T K+ I L+D+Y
Sbjct: 252 DAVTFTGALTACSHVGLVEEGIQYFQTMKRDYKISPRIEHYGCLVDLY------------ 299
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC-THN 178
+ +G + AL + M S+KP+EV +L+AC TH
Sbjct: 300 -----------SRAGRLEDALKLVQSM---SMKPNEVVIGSLLAACRTHG 335
>gi|15231592|ref|NP_189297.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75275188|sp|Q38959.1|PP257_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g26630, chloroplastic; Flags: Precursor
gi|1402883|emb|CAA66814.1| hypothetical protein [Arabidopsis thaliana]
gi|1495263|emb|CAA66119.1| orf09 [Arabidopsis thaliana]
gi|11994298|dbj|BAB01728.1| unnamed protein product [Arabidopsis thaliana]
gi|20466384|gb|AAM20509.1| unknown protein [Arabidopsis thaliana]
gi|23198064|gb|AAN15559.1| unknown protein [Arabidopsis thaliana]
gi|332643668|gb|AEE77189.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 455
Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 106/184 (57%), Gaps = 9/184 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + ++SWT ++ ++ Q+D A F+QMP R+ V WTAMI Y++ R EA LF
Sbjct: 180 MPGRSIVSWTTMLYGLVSNSQLDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLF 239
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ MQ ++ +EFTIV++L A L +L +G W+ Y KN D F G ALIDMY C
Sbjct: 240 RRMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKC 299
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMF-SQMLRASIKPDEVAYVGV 171
++ A+ K +W +MI L + G G++AL +F AS++PD + +VGV
Sbjct: 300 GSLQDARKVFDVMQGKSLATWNSMITSLGVHGCGEEALSLFEEMEEEASVEPDAITFVGV 359
Query: 172 LSAC 175
LSAC
Sbjct: 360 LSAC 363
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 66/146 (45%), Gaps = 9/146 (6%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN-IMGDEFTIVSI 78
G+ A F+Q+ W MI ++ REAL LF M S+ D+FT +
Sbjct: 66 GETQYASLVFNQLQSPSTFTWNLMIRSLSVNHKPREALLLFILMMISHQSQFDKFTFPFV 125
Query: 79 LTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--DKF----- 131
+ A ++ LG + K ND+F N L+D+Y C + +K DK
Sbjct: 126 IKACLASSSIRLGTQVHGLAIKAGFFNDVFFQNTLMDLYFKCGKPDSGRKVFDKMPGRSI 185
Query: 132 -SWTTMIVGLAISGNGDKALDMFSQM 156
SWTTM+ GL + D A +F+QM
Sbjct: 186 VSWTTMLYGLVSNSQLDSAEIVFNQM 211
>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 518
Score = 145 bits (365), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 112/186 (60%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D++SW +++ Y G+++ AR+ FD+ P +D V W A+I GY+ N REAL LF
Sbjct: 199 MPKRDLVSWNVMITVYTKHGEMESARRLFDEAPMKDIVSWNALIGGYVLRNLNREALELF 258
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKT-YIDKNKVKNDIFAGNALIDMYCI 119
EM DE T++S+L+A A+L L+ GE + I+ NK K GNAL+DMY
Sbjct: 259 DEMCGVGECPDEVTMLSLLSACADLGDLESGEKVHAKIIEMNKGKLSTLLGNALVDMYAK 318
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C ++ KA KD SW ++I GLA G+ +++L +F +M + PDEV +VGV
Sbjct: 319 CGNIGKAVRVFWLIRDKDVVSWNSVISGLAFHGHAEESLGLFREMKMTKVCPDEVTFVGV 378
Query: 172 LSACTH 177
L+AC+H
Sbjct: 379 LAACSH 384
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 64/142 (45%), Gaps = 8/142 (5%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A Q F Q+P+ D +W I G + + A+ L+ +M ++ D FT +L A
Sbjct: 60 ALQMFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMDQRSVKPDNFTFPFVLKACTK 119
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTM 136
L ++ G + + + +++ N L+ + C D++ A + D +W+ +
Sbjct: 120 LFWVNTGSAVHGRVLRLGFGSNVVVRNTLLVFHAKCGDLKVATDIFDDSDKGDVVAWSAL 179
Query: 137 IVGLAISGNGDKALDMFSQMLR 158
I G A G+ A +F +M +
Sbjct: 180 IAGYAQRGDLSVARKLFDEMPK 201
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 62/164 (37%), Gaps = 47/164 (28%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G + +A FD + D V W+A+I GY + A LF EM
Sbjct: 156 GDLKVATDIFDDSDKGDVVAWSALIAGYAQRGDLSVARKLFDEMP--------------- 200
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKF 131
K D+ + N +I +Y ++E A+ KD
Sbjct: 201 ------------------------KRDLVSWNVMITVYTKHGEMESARRLFDEAPMKDIV 236
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
SW +I G + +AL++F +M PDEV + +LSAC
Sbjct: 237 SWNALIGGYVLRNLNREALELFDEMCGVGECPDEVTMLSLLSAC 280
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 10/158 (6%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+V Y G + A + F + ++D V W ++I G E+L LF+EM+ + +
Sbjct: 311 ALVDMYAKCGNIGKAVRVFWLIRDKDVVSWNSVISGLAFHGHAEESLGLFREMKMTKVCP 370
Query: 71 DEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
DE T V +L A ++ +D G + +K K++ I ++DM +++A
Sbjct: 371 DEVTFVGVLAACSHAGNVDEGNRYFHLMKNKYKIEPTIRHCGCVVDMLGRAGLLKEAFNF 430
Query: 127 ------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158
+ + W +++ + G+ + A Q+LR
Sbjct: 431 IASMKIEPNAIVWRSLLGACKVHGDVELAKRANEQLLR 468
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 126 AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
Q D F W T I G + S + A+ +++QM + S+KPD + VL ACT
Sbjct: 68 PQPDTFMWNTYIRGSSQSHDPVHAVALYAQMDQRSVKPDNFTFPFVLKACT 118
>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 145 bits (365), Expect = 8e-33, Method: Composition-based stats.
Identities = 70/187 (37%), Positives = 114/187 (60%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V+S TA+++ Y N G +D AR+ FD +P +D++ W AMIDGY + + EAL LF
Sbjct: 180 MPDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLF 239
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK-VKNDIFAGNALIDMYCI 119
+ M S+ DE T+V +L+A A L ++ G+W+ +Y+ ++ V+ ++ AL+DMYC
Sbjct: 240 RRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCK 299
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C +E A KD W MI G A+ G+ KAL+MF Q+ + P ++ ++G+
Sbjct: 300 CGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWPTDITFIGL 359
Query: 172 LSACTHN 178
L+AC+H+
Sbjct: 360 LNACSHS 366
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 31/139 (22%)
Query: 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIK 95
D + TA++ Y R A LF EM +++ ++ ++LT AN+ ALD
Sbjct: 153 DSYVATALLSMYARAGDAAAARALFDEMPDPHVV----SVTAMLTCYANMGALD------ 202
Query: 96 TYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQ 155
D ++ + + +KD W MI G G ++AL +F +
Sbjct: 203 ---DARRLFDGL------------------PRKDFICWNAMIDGYTQHGKPNEALQLFRR 241
Query: 156 MLRASIKPDEVAYVGVLSA 174
MLR+S +PDEV V VLSA
Sbjct: 242 MLRSSAEPDEVTVVLVLSA 260
>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
Length = 671
Score = 145 bits (365), Expect = 8e-33, Method: Composition-based stats.
Identities = 69/182 (37%), Positives = 109/182 (59%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+DV+SW A++ Y+ ++ AR FD+M RD + W MI+GY + EAL LF +M
Sbjct: 230 RDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQM 289
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ + E T+VS+L+A A+L ALD G + TYI+ N+++ + G AL+DMY C +
Sbjct: 290 RAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKI 349
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
A KD +W T+I G+AI GN +A +F +M A ++P+++ +V +LSAC
Sbjct: 350 SLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSAC 409
Query: 176 TH 177
+H
Sbjct: 410 SH 411
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G++ +A Q F+ M +D + W +I G +EA LF+EM+ + +
Sbjct: 337 TALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVE 396
Query: 70 GDEFTIVSILTARANLRALDLGE 92
++ T V+IL+A ++ +D G+
Sbjct: 397 PNDITFVAILSACSHAGMVDEGQ 419
>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
Length = 629
Score = 145 bits (365), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 110/182 (60%), Gaps = 9/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+V+ W ++ Y+ G + +R+ FD MP + V W MI G + F+EA+ +F +MQ
Sbjct: 189 NVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQ 248
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
++ + T+VS+L A + L A++LG+W+ + +KN+++ D G+ALIDMY C ++
Sbjct: 249 LGDVPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSID 308
Query: 125 KA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
KA +K+ +W+ +I GLA+ G ALD F +M +A + P +V Y+GVLSAC
Sbjct: 309 KAVQVFEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSAC 368
Query: 176 TH 177
+H
Sbjct: 369 SH 370
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 75/167 (44%), Gaps = 26/167 (15%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMP-ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI 68
+A++ Y G +D A Q F+ + +++ + W+A+I G R R+AL F MQ + +
Sbjct: 295 SALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGV 354
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
+ + +L+A ++ ++ G I + ++++ + +E
Sbjct: 355 TPSDVVYIGVLSACSHAGLVEEGRSIYYH---------------MVNIVGLLPRIEH--- 396
Query: 129 DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ L +G ++A + +L +KPD+V +L AC
Sbjct: 397 ----YGCMVDLLGRAGCLEEAEQL---ILNMPVKPDDVILKALLGAC 436
>gi|15225365|ref|NP_182015.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546766|sp|Q1PEU4.2|PP201_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g44880
gi|2344896|gb|AAC31836.1| hypothetical protein [Arabidopsis thaliana]
gi|330255385|gb|AEC10479.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 555
Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 111/186 (59%), Gaps = 10/186 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +K VI+WT ++ Y N +D AR+ FD MPER+ V W MI GY + + +E + LF
Sbjct: 202 MTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGIRLF 261
Query: 61 QEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
QEMQ T+++ D+ TI+S+L A ++ AL LGEW ++ + K+ + A++DMY
Sbjct: 262 QEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSK 321
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C ++EKA +K SW MI G A++GN ALD+F M+ KPDE+ + V
Sbjct: 322 CGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEE-KPDEITMLAV 380
Query: 172 LSACTH 177
++AC H
Sbjct: 381 ITACNH 386
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 33/176 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPE-RDYVLWTAMIDGYLRVNRFREALTL 59
M ++ +SWTA++S YI G++D+A + FDQMP +D V++ AM+DG+++ A L
Sbjct: 139 MPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVKSGDMTSARRL 198
Query: 60 FQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
F EM ++ T +++ N++ DI A L D
Sbjct: 199 FDEMTHKTVI----TWTTMIHGYCNIK-------------------DIDAARKLFDAM-- 233
Query: 120 CADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGVLSA 174
+++ SW TMI G + + + +F +M S+ PD+V + VL A
Sbjct: 234 ------PERNLVSWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPA 283
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 10/145 (6%)
Query: 22 VDIARQCFDQMPER-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG-DEFTIVSIL 79
+ AR+ FDQ P+R D L +MI YL ++ ++ L+++++ D FT ++
Sbjct: 26 IGYARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLT 85
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKF 131
+ + + G + + I + D++ ++DMY + E + +
Sbjct: 86 KSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEV 145
Query: 132 SWTTMIVGLAISGNGDKALDMFSQM 156
SWT +I G G D A +F QM
Sbjct: 146 SWTALISGYIRCGELDLASKLFDQM 170
>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 110/182 (60%), Gaps = 8/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DVI T +V Y G V IARQ FD+MP RD V W AMI + + +EAL + +M+
Sbjct: 139 DVIVCTNLVKCYSAMGSVCIARQVFDKMPARDLVAWNAMISCFSQQGLHQEALQTYNQMR 198
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ N+ D FT+V ++++ A+L AL++G + + +N + ++ GNALIDMY C ++
Sbjct: 199 SENVDIDGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQSLYVGNALIDMYAKCGSLD 258
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+A +KD F+W +MIVG + G G +A+ F QML A I+P+ V ++G+L C+
Sbjct: 259 QAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEARIQPNPVTFLGLLCGCS 318
Query: 177 HN 178
H
Sbjct: 319 HQ 320
>gi|356544269|ref|XP_003540576.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 522
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 116/186 (62%), Gaps = 12/186 (6%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDY--VLWTAMIDGYLRVNRFREALTLFQ 61
K+V WT++V+ Y N G V+ AR FD +PER+ V ++AM+ GY++ FRE + LF+
Sbjct: 159 KNVACWTSLVTGYCNNGLVNDARNLFDAIPERERNDVSYSAMVSGYVKNGCFREGIQLFR 218
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVK--NDIFAGNALIDMYCI 119
E++ N+ + + S+L+A A++ A + G+WI Y+D+NK + ++ G ALID Y
Sbjct: 219 ELKDRNVKPNNSLLASVLSACASVGAFEEGKWIHAYVDQNKSQCYYELELGTALIDFYTK 278
Query: 120 CADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C VE AQ KD +W+ M++GLAI+ +AL++F +M + +P+ V ++GV
Sbjct: 279 CGCVEPAQRVFGNMKTKDVAAWSAMVLGLAINAKNQEALELFEEMEKVGPRPNAVTFIGV 338
Query: 172 LSACTH 177
L+AC H
Sbjct: 339 LTACNH 344
>gi|357439099|ref|XP_003589826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478874|gb|AES60077.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 526
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 109/178 (61%), Gaps = 11/178 (6%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERD--YVLWTAMIDGYLRVNRFREALTLFQEMQTSNI 68
A++ Y+ G V AR+ FD M ERD WTAMI GY + + EA+ LF+ MQ N+
Sbjct: 181 AMIVAYVKVGDVSNARKLFDSMLERDKDVFSWTAMISGYTQAHNPNEAIKLFRRMQLENV 240
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA-- 126
DE I+++L+A A+L AL LGEWI YI+K+K+ + N+LIDMY ++ KA
Sbjct: 241 KPDEIAILAVLSACADLGALHLGEWIHNYIEKHKLSKIVPLYNSLIDMYAKSGNIRKALE 300
Query: 127 ------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVAYVGVLSACTH 177
K +WTTMI GLA+ G G +AL +FS M + +KP+EV ++ +LSAC+H
Sbjct: 301 LFENMKHKTIITWTTMIAGLALHGLGKEALRVFSCMEKEDRVKPNEVTFIAILSACSH 358
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+K V + +++ Y G + A + F+ M + + WT MI G +EAL +F
Sbjct: 276 SKIVPLYNSLIDMYAKSGNIRKALELFENMKHKTIITWTTMIAGLALHGLGKEALRVFSC 335
Query: 63 MQTSN-IMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M+ + + +E T ++IL+A +++ ++LG ++ + + ++ I +ID+
Sbjct: 336 MEKEDRVKPNEVTFIAILSACSHVGLVELGRDYFTSMRSRYGIEPKIEHYGCMIDLLGRA 395
Query: 121 ADVEKAQK 128
+++A++
Sbjct: 396 GHLQEAKE 403
>gi|255562765|ref|XP_002522388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538466|gb|EEF40072.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 472
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 114/186 (61%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NK+V+SWT++++ Y +G V+ AR+ FDQMPE++ V W +MI Y++ + REAL LF
Sbjct: 250 MPNKNVVSWTSMITAYAKQGLVEYARKSFDQMPEKNVVSWNSMISSYVQGGQCREALDLF 309
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM + ++ +E T++S+L+A + L +G+ I YI + N+LIDMY C
Sbjct: 310 HEMHSFRVVPNEATLLSVLSACGQIGDLVMGKKIHNYICGTSSMYSVTLCNSLIDMYAKC 369
Query: 121 ADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ E K+ SW +I LA+ G G +A+++F +M A + PDE+ ++G+L
Sbjct: 370 GALRIAIDVFNEMPNKNLVSWNVIIGALALHGYGVEAVELFRKMQAAGVWPDEITFMGLL 429
Query: 173 SACTHN 178
SAC+H+
Sbjct: 430 SACSHS 435
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 92/204 (45%), Gaps = 39/204 (19%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ YI G + AR+ FD M ER V W +MI GY ++ +E LF+EM+
Sbjct: 128 GLINAYIACGFIRYARKMFDDMSERSLVSWNSMIGGYSKLGWCKEVFLLFKEMREIGTEA 187
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV------- 123
D+FT+V++L + ++LG ++ YI +K D+ A NALIDMY C +
Sbjct: 188 DDFTLVNLLLVCSRRCDINLGRFVHLYIQITGMKIDLVARNALIDMYAKCGALVLAERVF 247
Query: 124 --------------------------------EKAQKDKFSWTTMIVGLAISGNGDKALD 151
+ +K+ SW +MI G +ALD
Sbjct: 248 QQMPNKNVVSWTSMITAYAKQGLVEYARKSFDQMPEKNVVSWNSMISSYVQGGQCREALD 307
Query: 152 MFSQMLRASIKPDEVAYVGVLSAC 175
+F +M + P+E + VLSAC
Sbjct: 308 LFHEMHSFRVVPNEATLLSVLSAC 331
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 74/165 (44%), Gaps = 8/165 (4%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G +D A F+Q+ + ++ ++I GY N +++ L++++ S + +EFT +L
Sbjct: 36 GNLDYAHLVFNQISIPNKFMYNSLIRGYCNSNSPIKSMFLYRQLIDSGLSPNEFTFPFVL 95
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKF 131
A A+ A + + + K + I N LI+ Y C + A+K
Sbjct: 96 KACASKSAHWMSMIVHGHAQKLGFASLICVQNGLINAYIACGFIRYARKMFDDMSERSLV 155
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
SW +MI G + G + +F +M + D+ V +L C+
Sbjct: 156 SWNSMIGGYSKLGWCKEVFLLFKEMREIGTEADDFTLVNLLLVCS 200
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y G + IA F++MP ++ V W +I EA+ LF++MQ + +
Sbjct: 361 SLIDMYAKCGALRIAIDVFNEMPNKNLVSWNVIIGALALHGYGVEAVELFRKMQAAGVWP 420
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDK 100
DE T + +L+A ++ +D G + Y DK
Sbjct: 421 DEITFMGLLSACSHSGLVDSGLY---YFDK 447
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 106/178 (59%), Gaps = 10/178 (5%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ YI G+V+ A F+ + +D + W +I GY +N ++EAL LFQEM S
Sbjct: 275 ALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESP 334
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDK--NKVKNDIFAGNALIDMYCICADVEKAQ- 127
+E T++SIL A A+L A+D+G WI YIDK V N +LIDMY C D+E AQ
Sbjct: 335 NEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQ 394
Query: 128 -------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+ SW MI G A+ G + A D+FS+M + I+PD++ +VG+LSAC+H+
Sbjct: 395 VFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHS 452
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 110/183 (60%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++DV+S+TA++ Y + G + A++ FD++P +D V W A+I GY ++EAL LF+E
Sbjct: 166 HRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKE 225
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M +N+ DE T+V++L+A A +++LG + ++ID + +++ NALID+Y C +
Sbjct: 226 MMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGE 285
Query: 123 VEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
VE A KD SW T+I G +AL +F +MLR+ P+EV + +L A
Sbjct: 286 VETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPA 345
Query: 175 CTH 177
C H
Sbjct: 346 CAH 348
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 39/189 (20%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88
FD + E + ++W M G+ + AL L+ M + ++ + +T +L A A +A
Sbjct: 60 FDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAF 119
Query: 89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK-------------------- 128
G+ I ++ K D++ +LI MY E A+K
Sbjct: 120 REGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGY 179
Query: 129 -------------------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
D SW +I G A +GN +AL++F +M++ ++KPDE V
Sbjct: 180 ASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMV 239
Query: 170 GVLSACTHN 178
VLSAC +
Sbjct: 240 TVLSACAQS 248
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 72/166 (43%), Gaps = 25/166 (15%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T+++ Y G ++ A+Q FD M R W AMI G+ R A +F M+ I
Sbjct: 377 TSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIE 436
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
D+ T V +L+A ++ LDLG IF ++ + Y I +E
Sbjct: 437 PDDITFVGLLSACSHSGMLDLGR-------------HIF--RSMTEDYKITPKLEH---- 477
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ MI L SG +A +M + M + PD V + +L AC
Sbjct: 478 ---YGCMIDLLGHSGLFKEAEEMINSM---EMDPDGVIWCSLLKAC 517
>gi|255558236|ref|XP_002520145.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540637|gb|EEF42200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 327
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 106/174 (60%), Gaps = 8/174 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ D++ TA+VS G V AR+ FD MP RD++ W+AMI GY + + REAL LF
Sbjct: 145 IPQPDLVCQTAMVSACSKCGDVGFARELFDSMPHRDHIAWSAMIAGYAQCGQSREALALF 204
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
MQ ++ E ++VS+L+A + L ALD G W YI++NK+ + G AL+DMY C
Sbjct: 205 HLMQLEDVKVSEVSMVSVLSASSQLGALDNGRWAHAYIERNKIPVTVTLGTALVDMYAKC 264
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 166
D+ KA +K+ ++W++ I GLA++G G K L++FS M + + P+E+
Sbjct: 265 GDMNKAMEVFWAMKEKNVYTWSSAIYGLAMNGAGHKCLELFSLMKKDGVLPNEL 318
>gi|449477795|ref|XP_004155125.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 110/182 (60%), Gaps = 8/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DVI T +V Y G V IARQ FD+MP RD V W AMI + + +EAL + +M+
Sbjct: 139 DVIVCTNLVKCYSAMGLVCIARQVFDKMPARDLVAWNAMISCFSQQGLHQEALQTYNQMR 198
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ N+ D FT+V ++++ A+L AL++G + + +N + ++ GNALIDMY C ++
Sbjct: 199 SENVDVDGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQSLYVGNALIDMYAKCGSLD 258
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+A +KD F+W +MIVG + G G +A+ F QML A I+P+ V ++G+L C+
Sbjct: 259 QAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEARIQPNPVTFLGLLCGCS 318
Query: 177 HN 178
H
Sbjct: 319 HQ 320
>gi|449452160|ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Cucumis sativus]
Length = 532
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 109/186 (58%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +SWT ++ Y N G VD AR+ FD +D +W AMI GY++ N F+E L +F
Sbjct: 166 MPELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLHMF 225
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ MQ + + DE IV+IL+A A++ ALD G WI Y+ + + + LIDMY C
Sbjct: 226 RLMQLTEVEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLGLPLTLRVSTGLIDMYAKC 285
Query: 121 ADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ E +Q+D W MI G+A+ G+G+ A+ +F +M +A IKPD + ++ VL
Sbjct: 286 GHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIKPDNITFIAVL 345
Query: 173 SACTHN 178
+AC+++
Sbjct: 346 AACSNS 351
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 81/211 (38%), Gaps = 45/211 (21%)
Query: 12 IVSRYIN------RGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT 65
++SR +N G + A + F + ++ MI L F A+ +F +
Sbjct: 39 VLSRLLNFCAESRNGSLSHAFKLFQHIQHPTICIFNTMIKALLLRGEFLNAIAVFSAIFR 98
Query: 66 SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK 125
+ I D +T+ +L A A + + LGE I K + F GN+L+ MY ++
Sbjct: 99 NGIHPDTYTLPYVLKASARMTNIHLGESIHACTIKLGSAVNEFVGNSLLVMYRSFDNMRS 158
Query: 126 AQK--------DKFSWTTMIVGLAISGNGDKA---------------------------- 149
A++ SWT MI G A G+ D A
Sbjct: 159 ARQVFDEMPELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCF 218
Query: 150 ---LDMFSQMLRASIKPDEVAYVGVLSACTH 177
L MF M ++PDE V +LSAC H
Sbjct: 219 KEGLHMFRLMQLTEVEPDEAIIVTILSACAH 249
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T ++ Y G +D+A+ F++M +RD V W AMI G A+ LF EM+ + I
Sbjct: 276 TGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIK 335
Query: 70 GDEFTIVSILTARANLRALDLG 91
D T +++L A +N +D G
Sbjct: 336 PDNITFIAVLAACSNSGMVDEG 357
>gi|15234044|ref|NP_193619.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098703|sp|O49399.2|PP321_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18840
gi|5738365|emb|CAA16741.2| putative protein [Arabidopsis thaliana]
gi|7268678|emb|CAB78886.1| putative protein [Arabidopsis thaliana]
gi|332658697|gb|AEE84097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 545
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 111/186 (59%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ ++V SW ++S Y G V A++ FD MP RD V W AM+ Y V + E L +F
Sbjct: 232 MEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVF 291
Query: 61 QEM-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+M S D FT+VS+L+A A+L +L GEW+ YIDK+ ++ + F AL+DMY
Sbjct: 292 NKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATALVDMYSK 351
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C ++KA ++D +W ++I L++ G G AL++FS+M+ KP+ + ++GV
Sbjct: 352 CGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGV 411
Query: 172 LSACTH 177
LSAC H
Sbjct: 412 LSACNH 417
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 71/172 (41%), Gaps = 32/172 (18%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV +V+ Y G +IAR+ D+MP RD V W +++ YL EA LF EM+
Sbjct: 174 DVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDEME 233
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
N+ F I + A L + K D V
Sbjct: 234 ERNVESWNFMI-------SGYAAAGLVKEAKEVFDSMPV--------------------- 265
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI-KPDEVAYVGVLSAC 175
+D SW M+ A G ++ L++F++ML S KPD V VLSAC
Sbjct: 266 ---RDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSAC 314
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 8/143 (5%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81
V A +++ + ++I Y + ALT+F+EM + D+++ +L A
Sbjct: 90 VSYAHSILNRIGSPNGFTHNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKA 149
Query: 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSW 133
A + G I K+ + D+F N L+++Y E A+K D SW
Sbjct: 150 CAAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSW 209
Query: 134 TTMIVGLAISGNGDKALDMFSQM 156
+++ G D+A +F +M
Sbjct: 210 NSLLSAYLEKGLVDEARALFDEM 232
Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G++D A + F +RD W ++I ++AL +F EM
Sbjct: 343 TALVDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFK 402
Query: 70 GDEFTIVSILTARANLRALD 89
+ T + +L+A ++ LD
Sbjct: 403 PNGITFIGVLSACNHVGMLD 422
>gi|356553601|ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Glycine max]
Length = 534
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 111/181 (61%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV++ +++ G+VD +R+ FD MP R V W +MI GY+R R EAL LF++MQ
Sbjct: 189 DVVACNSMIMGLAKCGEVDKSRRLFDNMPTRTRVTWNSMISGYVRNKRLMEALELFRKMQ 248
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ EFT+VS+L+A A+L AL GEW+ Y+ + + ++ A+IDMYC C +
Sbjct: 249 GERVEPSEFTMVSLLSACAHLGALKHGEWVHDYVKRGHFELNVIVLTAIIDMYCKCGVIV 308
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
KA + W ++I+GLA++G KA++ FS++ + +KPD V+++GVL+AC
Sbjct: 309 KAIEVFEASPTRGLSCWNSIIIGLALNGYERKAIEYFSKLEASDLKPDHVSFIGVLTACK 368
Query: 177 H 177
+
Sbjct: 369 Y 369
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 82/199 (41%), Gaps = 39/199 (19%)
Query: 18 NRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVS 77
+ G ++ A F +P + W +I G+ R + A++LF +M S+++ T S
Sbjct: 70 SSGDINYAYLLFTTIPSPNLYCWNTIIRGFSRSSTPHLAISLFVDMLCSSVLPQRLTYPS 129
Query: 78 ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------D 129
+ A A L A G + + K ++ D F N +I MY + +A++ D
Sbjct: 130 VFKAYAQLGAGYDGAQLHGRVVKLGLEKDQFIQNTIIYMYANSGLLSEARRVFDELVDLD 189
Query: 130 KFSWTTMIVGLAISGNGDK-------------------------------ALDMFSQMLR 158
+ +MI+GLA G DK AL++F +M
Sbjct: 190 VVACNSMIMGLAKCGEVDKSRRLFDNMPTRTRVTWNSMISGYVRNKRLMEALELFRKMQG 249
Query: 159 ASIKPDEVAYVGVLSACTH 177
++P E V +LSAC H
Sbjct: 250 ERVEPSEFTMVSLLSACAH 268
>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Vitis vinifera]
Length = 518
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 112/186 (60%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ +SW ++ + G+V A FDQM ERD + WT+MI G+++ F +AL F
Sbjct: 153 MHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWF 212
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ + + D TI+S+L A ANL AL LG WI ++ K K++I N+LIDMY C
Sbjct: 213 REMQLAGVEPDYVTIISVLAACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRC 272
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ A ++ SW +MIVG A++G+ ++AL+ F+ M + +PD V++ G L
Sbjct: 273 GCIRLARQVFEQMPKRSLVSWNSMIVGFALNGHAEEALEFFNLMRKEGFRPDGVSFTGAL 332
Query: 173 SACTHN 178
+AC+H+
Sbjct: 333 TACSHS 338
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 42/185 (22%)
Query: 33 PERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN--LRALDL 90
P V WT+ I + R + EA F MQ + + + T +++L+A + L L
Sbjct: 50 PIDPIVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRF 109
Query: 91 GEWIKTYIDKNKVKND-IFAGNALIDMYCICADVEKA----------------------- 126
G I Y+ K + + + G AL+DMY C ++ A
Sbjct: 110 GGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCM 169
Query: 127 ----------------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
++D SWT+MI G G ++AL+ F +M A ++PD V +
Sbjct: 170 RNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIIS 229
Query: 171 VLSAC 175
VL+AC
Sbjct: 230 VLAAC 234
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 28/170 (16%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y G + +ARQ F+QMP+R V W +MI G+ EAL F M+
Sbjct: 264 SLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFALNGHAEEALEFFNLMRKEGFRP 323
Query: 71 DEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
D + LTA ++ +D G ++ K+ I L+D+Y
Sbjct: 324 DGVSFTGALTACSHSGLVDEGLQFFDIMKRTRKISPRIEHYGCLVDLY------------ 371
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC-THN 178
+ +G + AL++ + M +KP+EV +L+AC TH
Sbjct: 372 -----------SRAGRLEDALNVIANM---PMKPNEVVLGSLLAACRTHG 407
>gi|108706388|gb|ABF94183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 823
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 112/184 (60%), Gaps = 10/184 (5%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD++SW +++ Y RG + +AR+ FDQ+PERD V W MI GY+R AL LF++M
Sbjct: 177 KDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQM 236
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKN--DIFAGNALIDMYCICA 121
Q D T++S+L+A A+ LD+G+ + + + +N + GNALIDMY C
Sbjct: 237 QRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCG 296
Query: 122 DVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
++ A KD +W +++ GLA+ G+ +++DMF +ML+ ++PDE+ +V VL
Sbjct: 297 SMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLI 356
Query: 174 ACTH 177
AC+H
Sbjct: 357 ACSH 360
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 12/149 (8%)
Query: 19 RGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM----QTSNIMGDEFT 74
RG + A FDQ+P D ++ +I G R+A++L+ M + D+ T
Sbjct: 25 RGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLT 84
Query: 75 IVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKA 126
+L A + A D G + ++ K ++D F NALI M+ C ++ +A
Sbjct: 85 FPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRA 144
Query: 127 QKDKFSWTTMIVGLAISGNGDKALDMFSQ 155
++D +W+ MI G A G+ A D+F +
Sbjct: 145 REDAVAWSAMITGCARRGDIGAARDLFDE 173
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 71/164 (43%), Gaps = 10/164 (6%)
Query: 6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT 65
V+ A++ Y G + A + F M ++D W +++ G E++ +F++M
Sbjct: 282 VVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLK 341
Query: 66 SNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICA--- 121
+ DE T V++L A ++ +D G E+ K +V+ +I ++DM
Sbjct: 342 GKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLK 401
Query: 122 ------DVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159
D K + + W T++ + G + A Q+L+A
Sbjct: 402 EAFEFIDTMKCEPNSVIWRTLLSACRVHGEIELAKHANRQLLKA 445
>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
Length = 719
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 72/186 (38%), Positives = 108/186 (58%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+ +SW+ ++ + G +D A + FDQMPE++ V WT M+DG+ R +AL++F
Sbjct: 276 MPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMF 335
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M + + FTIVS L+A A + L+ G I YI N + G AL+DMY C
Sbjct: 336 SKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKC 395
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++E A QK +WT MI G AI G+ ++A+ F QM+ A IKPDEV ++ +L
Sbjct: 396 GNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALL 455
Query: 173 SACTHN 178
+AC H+
Sbjct: 456 TACMHS 461
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 56/241 (23%), Positives = 89/241 (36%), Gaps = 75/241 (31%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T ++S R ++ + F+ ++ + A+I G + F A+ F+ M S I
Sbjct: 117 TQLISSSSLRKSINHSLAVFNHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIK 176
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY------------ 117
D T +L + A L + +LG I I + ++ D F +L+DMY
Sbjct: 177 PDRLTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKV 236
Query: 118 ------------------------CICADVEKA--------QKDKFSWTTMIVGLAISG- 144
C ++KA +K+ SW+T+I G A +G
Sbjct: 237 FDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGD 296
Query: 145 ----------------------------NGD--KALDMFSQMLRASIKPDEVAYVGVLSA 174
NGD KAL MFS+ML ++P+ V LSA
Sbjct: 297 MDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSA 356
Query: 175 C 175
C
Sbjct: 357 C 357
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 25/166 (15%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G ++ A + F + ++ WT MI G+ +A+ F++M + I
Sbjct: 386 TALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIK 445
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
DE +++LTA + +D+G + D ++ YCI E + K
Sbjct: 446 PDEVVFLALLTACMHSGQVDIG---LNFFDSMRLD------------YCI----EPSMK- 485
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+T ++ L SG +AL +M + PD V + + AC
Sbjct: 486 --HYTLIVDMLGRSGQLKEALRFIERM---PMNPDFVIWGALFCAC 526
>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 113/186 (60%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ KD ++WT ++ Y + AR+ + MP++D V W A+I Y + + EAL +F
Sbjct: 293 MEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVF 352
Query: 61 QEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
E+Q N+ ++ T+VS L+A A + AL+LG WI +YI K+ ++ + +ALI MY
Sbjct: 353 HELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSK 412
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C D+EK+ ++D F W+ MI GLA+ G G++A+DMF +M A++KP+ V + V
Sbjct: 413 CGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNV 472
Query: 172 LSACTH 177
AC+H
Sbjct: 473 FCACSH 478
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 104/182 (57%), Gaps = 12/182 (6%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV +++ Y + G +D A + F + E+D V W +MI+G+++ +AL LF++M+
Sbjct: 165 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 224
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ ++ T+V +L+A A +R L+ G + +YI++N+V ++ NA++DMY C +E
Sbjct: 225 SEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIE 284
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A +KD +WTTM+ G AIS + + A ++ + M + I VA+ ++SA
Sbjct: 285 DAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDI----VAWNALISAYE 340
Query: 177 HN 178
N
Sbjct: 341 QN 342
Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 9/165 (5%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-QTSNIMGDEFTIVSI 78
++ AR+ FD++P+ + W +I Y ++ F +M S +++T +
Sbjct: 78 ASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFL 137
Query: 79 LTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDK 130
+ A A + +L LG+ + K+ V +D+F N+LI Y C D++ A +KD
Sbjct: 138 IKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDV 197
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
SW +MI G G+ DKAL++F +M +K V VGVLSAC
Sbjct: 198 VSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSAC 242
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 49/92 (53%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+A++ Y G ++ +R+ F+ + +RD +W+AMI G EA+ +F +MQ +N+
Sbjct: 404 SALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVK 463
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKN 101
+ T ++ A ++ +D E + ++ N
Sbjct: 464 PNGVTFTNVFCACSHTGLVDEAESLFHQMESN 495
>gi|449467271|ref|XP_004151347.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
gi|449530724|ref|XP_004172343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
Length = 543
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 109/182 (59%), Gaps = 8/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+SW +++ G++D +R+ FD+MP ++ + W +MI GY+R F+EAL LF +MQ
Sbjct: 189 DVVSWNSMILGLAKCGEIDESRKLFDKMPVKNPISWNSMIGGYVRNGMFKEALKLFIKMQ 248
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
I EFT+VS+L A A + AL G WI YI KN ++ + A+IDMYC C +
Sbjct: 249 EERIQPSEFTMVSLLNASAQIGALRQGVWIHEYIKKNNLQLNAIVVTAIIDMYCKCGSIG 308
Query: 125 KAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A + SW +MI GLA++G +A+ +F + +S+KPD ++++ VL+AC
Sbjct: 309 NALQVFEKIPCRSLSSWNSMIFGLAVNGCEKEAILVFKMLESSSLKPDCISFMAVLTACN 368
Query: 177 HN 178
H
Sbjct: 369 HG 370
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 9/146 (6%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ-TSNIMGDEFTIVSI 78
G +D A F QM + W +I G+ + + + AL LF +M +S + T SI
Sbjct: 71 GNMDYAYLVFLQMQNPNLFSWNTVIRGFSQSSNPQIALYLFIDMLVSSQVEPQRLTYPSI 130
Query: 79 LTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DK 130
A + L G + I K ++ D F N ++ MY + +A++ D
Sbjct: 131 FKAYSQLGLAHDGAQLHGRIIKLGLQFDPFIRNTILYMYATGGFLSEARRIFNQEMEFDV 190
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQM 156
SW +MI+GLA G D++ +F +M
Sbjct: 191 VSWNSMILGLAKCGEIDESRKLFDKM 216
Score = 43.5 bits (101), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 79/189 (41%), Gaps = 21/189 (11%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQM-------PERDYVLWTAMIDGYLRVNRF 53
M+N ++ SW ++ + IA F M P+R + + ++ Y ++
Sbjct: 83 MQNPNLFSWNTVIRGFSQSSNPQIALYLFIDMLVSSQVEPQR--LTYPSIFKAYSQLGLA 140
Query: 54 REALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNAL 113
+ L + + D F +IL A L I +++ D+ + N++
Sbjct: 141 HDGAQLHGRIIKLGLQFDPFIRNTILYMYATGGFLSEAR----RIFNQEMEFDVVSWNSM 196
Query: 114 IDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165
I C ++++++ K+ SW +MI G +G +AL +F +M I+P E
Sbjct: 197 ILGLAKCGEIDESRKLFDKMPVKNPISWNSMIGGYVRNGMFKEALKLFIKMQEERIQPSE 256
Query: 166 VAYVGVLSA 174
V +L+A
Sbjct: 257 FTMVSLLNA 265
>gi|242048094|ref|XP_002461793.1| hypothetical protein SORBIDRAFT_02g008110 [Sorghum bicolor]
gi|241925170|gb|EER98314.1| hypothetical protein SORBIDRAFT_02g008110 [Sorghum bicolor]
Length = 601
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/187 (41%), Positives = 111/187 (59%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+SWTA+VS Y G +D AR FDQMP+++ V W AMI GY +R+ EAL F
Sbjct: 269 MDRKDVVSWTAMVSAYAKIGDLDSARVLFDQMPDKNLVSWNAMITGYNHNSRYDEALRTF 328
Query: 61 QEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
Q+M M DE T+VS+++A A L +++ WI +YI K+ + GNALIDM+
Sbjct: 329 QQMMLEGRFMPDEATLVSVVSACAQLGSVEYCNWISSYISKSNTHITVALGNALIDMFAK 388
Query: 120 CADVEKAQK--DKF------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C DV +A+ DK +WTTMI G A +G +AL ++S + R + D+ ++
Sbjct: 389 CGDVGRARLAFDKMKTRCVITWTTMISGFAYNGQFREALLIYSDICREGVTLDDTIFIAA 448
Query: 172 LSACTHN 178
L+AC H
Sbjct: 449 LAACAHG 455
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 17/186 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++DV+SW +IV Y++ G A + F+ +PER+ V W ++ + R A +F
Sbjct: 176 MADRDVVSWNSIVGVYMSSGDTTGAMELFEAIPERNVVSWNTIVAAFTRAGDMVSAHAVF 235
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M + + ++S N+ E +T D + D+ + A++ Y
Sbjct: 236 DRMPIRDAISWNL-MISGYAGSGNV------ESARTLFDLMD-RKDVVSWTAMVSAYAKI 287
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQ-MLRASIKPDEVAYVGV 171
D++ A+ K+ SW MI G + D+AL F Q ML PDE V V
Sbjct: 288 GDLDSARVLFDQMPDKNLVSWNAMITGYNHNSRYDEALRTFQQMMLEGRFMPDEATLVSV 347
Query: 172 LSACTH 177
+SAC
Sbjct: 348 VSACAQ 353
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M+ + + + FT +L A +LR L L + I + +D+ NAL+++Y C D
Sbjct: 103 MRAAGVSPNGFTFTFLLRACESLRRLPLCRCVHGQIVRCGFGSDVVVQNALLNVYYKCGD 162
Query: 123 VEK-----------AQKDKFSWTTMIVGLAISGNGDKALDMF 153
A +D SW +++ SG+ A+++F
Sbjct: 163 PGDVGVARKVFDGMADRDVVSWNSIVGVYMSSGDTTGAMELF 204
>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Glycine max]
Length = 721
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 112/185 (60%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ +K ++ TA++S Y G V AR FD+M E+D V W+AMI GY + EAL LF
Sbjct: 278 LPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLF 337
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EMQ I+ D+ T++S+++A AN+ AL +WI TY DKN + NALIDMY C
Sbjct: 338 NEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKC 397
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ KA +K+ SW++MI A+ G+ D A+ +F +M +I+P+ V ++GVL
Sbjct: 398 GNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVL 457
Query: 173 SACTH 177
AC+H
Sbjct: 458 YACSH 462
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 93/213 (43%), Gaps = 39/213 (18%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ D +A+++ Y G++ AR FD+M RD V W MIDGY + + L L++E
Sbjct: 148 HADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEE 207
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M+TS D + ++L+A A+ L G+ I +I N + +L++MY C
Sbjct: 208 MKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGA 267
Query: 123 VEKA---------------------------------------QKDKFSWTTMIVGLAIS 143
+ A +KD W+ MI G A S
Sbjct: 268 MHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAES 327
Query: 144 GNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+AL +F++M R I PD++ + V+SAC
Sbjct: 328 YQPLEALQLFNEMQRRRIVPDQITMLSVISACA 360
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 9/165 (5%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81
+D A F +P ++ + R L+L+ ++ + D F+ +L A
Sbjct: 65 LDYALSLFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKA 124
Query: 82 RANLRALDLGEWIKTYIDK-NKVKNDIFAGNALIDMYCICADVEKA--------QKDKFS 132
+ L AL+LG I K D F +ALI MY C + A +D +
Sbjct: 125 VSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVT 184
Query: 133 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
W MI G + + + D L ++ +M + +PD + VLSAC H
Sbjct: 185 WNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAH 229
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 81/171 (47%), Gaps = 8/171 (4%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G + AR+ F+ MP ++ + W++MI+ + A+ LF M+ NI
Sbjct: 389 ALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEP 448
Query: 71 DEFTIVSILTARANLRALDLGE-WIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
+ T + +L A ++ ++ G+ + + I+++++ ++D+YC + KA
Sbjct: 449 NGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMEL 508
Query: 127 -QKDKFSWTTMIVGLAISG---NGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+ F +I G +S +G+ L F+ ++PD + VLS
Sbjct: 509 IETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELEPDHDGALVVLS 559
>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
Length = 978
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 110/184 (59%), Gaps = 8/184 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++DV+ T ++ Y G ++ A + F++MP RD V W +MI Y + EAL ++ +
Sbjct: 533 DQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQ 592
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M+ SN+ D FT+VS+L++ A++ AL +G + + + ++ +IF GNALIDMY C
Sbjct: 593 MRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGS 652
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+ A ++D F+W +MIVG + G GD+A+ F ML A ++P+ + ++G+L
Sbjct: 653 LASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCG 712
Query: 175 CTHN 178
C+H
Sbjct: 713 CSHQ 716
>gi|255564351|ref|XP_002523172.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537579|gb|EEF39203.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 569
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 110/183 (60%), Gaps = 8/183 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD +S +++ Y+ +G +D+A F Q+ ++D VLW M+ GY++ R +AL LF++M
Sbjct: 254 KDAVSHAILINGYVEKGLIDLASDIFYQIFDKDLVLWNVMLHGYIKAKRPIDALELFKKM 313
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
++ DE T+V IL A A+L L G + +I++N +K DIF ALIDMY C
Sbjct: 314 DNEGLIPDENTMVGILAACASLSDLQYGRVVHMFINRNDIKQDIFVKTALIDMYFKCGSP 373
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E+A KD F+WT +I GLA +G G+ AL++F QM I+P+E +V L++C
Sbjct: 374 EEALVTFYKMEYKDVFTWTAVIEGLANNGYGNVALNLFKQMEEQGIQPNEATFVSALTSC 433
Query: 176 THN 178
H+
Sbjct: 434 RHS 436
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 89/217 (41%), Gaps = 44/217 (20%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLW-TAMIDGYLRVNRFREALTLFQ 61
+ D+ A++ Y + Q++ AR FD+M ERD W T M Y N + + LF+
Sbjct: 116 DSDIYVQNALLHFYGSIKQLNYARLLFDKMYERDITSWNTFMGASYASSNSVIDLMDLFK 175
Query: 62 EMQTSNIMGDEFTIVSILTARANLR---ALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC 118
+ + + D+ T+V + +A A + +L+ G + + K + + + NAL++MY
Sbjct: 176 RLISEGVGADKITLVILFSAFAQAQCDESLEYGTAVHSCAIKMGLVSMLNVSNALLNMYT 235
Query: 119 ---------------------------ICADVEKA-------------QKDKFSWTTMIV 138
I VEK KD W M+
Sbjct: 236 KYRQMDAASRVFDEMGSKKDAVSHAILINGYVEKGLIDLASDIFYQIFDKDLVLWNVMLH 295
Query: 139 GLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
G + AL++F +M + PDE VG+L+AC
Sbjct: 296 GYIKAKRPIDALELFKKMDNEGLIPDENTMVGILAAC 332
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 64/145 (44%), Gaps = 10/145 (6%)
Query: 40 WTAMIDGYLRVN-RFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYI 98
W +I Y + + + L ++ + D +T +L A + L +G+ + T++
Sbjct: 51 WNCLIRAYSKTHTPIKSILVSNYFIELGSFYPDRYTYPLLLNACSRLSFASMGQLVHTHL 110
Query: 99 DKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTT-MIVGLAISGNGDKA 149
K + +DI+ NAL+ Y + A ++D SW T M A S +
Sbjct: 111 IKIGLDSDIYVQNALLHFYGSIKQLNYARLLFDKMYERDITSWNTFMGASYASSNSVIDL 170
Query: 150 LDMFSQMLRASIKPDEVAYVGVLSA 174
+D+F +++ + D++ V + SA
Sbjct: 171 MDLFKRLISEGVGADKITLVILFSA 195
>gi|115441777|ref|NP_001045168.1| Os01g0912900 [Oryza sativa Japonica Group]
gi|20161377|dbj|BAB90301.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113534699|dbj|BAF07082.1| Os01g0912900 [Oryza sativa Japonica Group]
gi|125573076|gb|EAZ14591.1| hypothetical protein OsJ_04514 [Oryza sativa Japonica Group]
Length = 533
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D SW+ ++ Y G + AR+ FD+MP ++ V WTAMI+GY + +E+L LF
Sbjct: 205 MPTRDSTSWSVLIVGYCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVPKESLALF 264
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EM+ + I D T+V +++A + + + +L W+ +Y+DK +++ + AL+DM+ C
Sbjct: 265 REMEAAGIEPDAATMVGVISAASQIGSTELAGWVGSYVDKKRIERNDKVLTALVDMHAKC 324
Query: 121 ADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+V E AQ D + +T +I GLA G+ AL +F +M S+ PD + +VGVL
Sbjct: 325 GNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVWPDPITFVGVL 384
Query: 173 SACTH 177
+AC+H
Sbjct: 385 TACSH 389
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 30/172 (17%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V + G VD A F ++ + D +TA+I G + AL +F+ MQ ++
Sbjct: 315 TALVDMHAKCGNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVW 374
Query: 70 GDEFTIVSILTARANLRALDLG--EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127
D T V +LTA ++ +D G W A++ Y + + +
Sbjct: 375 PDPITFVGVLTACSHAGLVDKGLDYW-----------------EAMVKYYGM-----ERR 412
Query: 128 KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC-THN 178
D ++ ++G A G ++A +M M + P A +LSAC TH
Sbjct: 413 ADHYACVVDMLGRA--GRLEEAFEMVQTM---PMGPHPGALGALLSACKTHG 459
>gi|218192167|gb|EEC74594.1| hypothetical protein OsI_10176 [Oryza sativa Indica Group]
Length = 523
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 112/185 (60%), Gaps = 10/185 (5%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD++SW +++ Y RG + +AR+ FDQ+PERD V W MI GY+R AL LF++M
Sbjct: 177 KDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQM 236
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKN--DIFAGNALIDMYCICA 121
Q D T++S+L+A A+ LD+G+ + + + +N + GNALIDMY C
Sbjct: 237 QRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCG 296
Query: 122 DVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
++ A KD +W +++ GLA+ G+ +++DMF +ML+ ++PDE+ +V VL
Sbjct: 297 SMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLI 356
Query: 174 ACTHN 178
AC+H
Sbjct: 357 ACSHG 361
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 12/149 (8%)
Query: 19 RGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM----QTSNIMGDEFT 74
RG + A FDQ+P D ++ +I G R+A++L+ M + D+ T
Sbjct: 25 RGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLT 84
Query: 75 IVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKA 126
+L A + A D G + ++ K ++D F NALI M+ C ++ +A
Sbjct: 85 FPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRA 144
Query: 127 QKDKFSWTTMIVGLAISGNGDKALDMFSQ 155
++D +W+ MI G A G+ A D+F +
Sbjct: 145 REDAVAWSAMITGCARRGDIGAARDLFDE 173
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 71/164 (43%), Gaps = 10/164 (6%)
Query: 6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT 65
V+ A++ Y G + A + F M ++D W +++ G E++ +F++M
Sbjct: 282 VVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLK 341
Query: 66 SNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICA--- 121
+ DE T V++L A ++ +D G E+ K +V+ +I ++DM
Sbjct: 342 GKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCIVDMLGRAGLLK 401
Query: 122 ------DVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159
D K + + W T++ + G + A Q+L+A
Sbjct: 402 EAFEFIDTMKCEPNSVIWRTLLSACRVHGEIELAKHANRQLLKA 445
>gi|222624265|gb|EEE58397.1| hypothetical protein OsJ_09562 [Oryza sativa Japonica Group]
Length = 523
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 112/185 (60%), Gaps = 10/185 (5%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD++SW +++ Y RG + +AR+ FDQ+PERD V W MI GY+R AL LF++M
Sbjct: 177 KDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQM 236
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKN--DIFAGNALIDMYCICA 121
Q D T++S+L+A A+ LD+G+ + + + +N + GNALIDMY C
Sbjct: 237 QRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCG 296
Query: 122 DVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
++ A KD +W +++ GLA+ G+ +++DMF +ML+ ++PDE+ +V VL
Sbjct: 297 SMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLI 356
Query: 174 ACTHN 178
AC+H
Sbjct: 357 ACSHG 361
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 12/149 (8%)
Query: 19 RGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM----QTSNIMGDEFT 74
RG + A FDQ+P D ++ +I G R+A++L+ M + D+ T
Sbjct: 25 RGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLT 84
Query: 75 IVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKA 126
+L A + A D G + ++ K ++D F NALI M+ C ++ +A
Sbjct: 85 FPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRA 144
Query: 127 QKDKFSWTTMIVGLAISGNGDKALDMFSQ 155
++D +W+ MI G A G+ A D+F +
Sbjct: 145 REDAVAWSAMITGCARRGDIGAARDLFDE 173
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 71/164 (43%), Gaps = 10/164 (6%)
Query: 6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT 65
V+ A++ Y G + A + F M ++D W +++ G E++ +F++M
Sbjct: 282 VVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLK 341
Query: 66 SNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICA--- 121
+ DE T V++L A ++ +D G E+ K +V+ +I ++DM
Sbjct: 342 GKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLK 401
Query: 122 ------DVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159
D K + + W T++ + G + A Q+L+A
Sbjct: 402 EAFEFIDTMKCEPNSVIWRTLLSACRVHGEIELAKHANRQLLKA 445
>gi|242059647|ref|XP_002458969.1| hypothetical protein SORBIDRAFT_03g043550 [Sorghum bicolor]
gi|241930944|gb|EES04089.1| hypothetical protein SORBIDRAFT_03g043550 [Sorghum bicolor]
Length = 530
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 113/186 (60%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D SW+ +++ Y G V AR+ FD+MP ++ V TAMI+GY + + + AL LF
Sbjct: 206 MPTRDTASWSVLIAGYCKGGLVQNARELFDKMPSKNLVARTAMINGYAQTGQPKAALALF 265
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++++ + I D T+V +++A + + + +L W+ Y+D+ K++ ++ AL+DM+ C
Sbjct: 266 RDLEAAGIEPDGATMVGVISAVSQIGSTELAGWVGAYVDRKKIERNVKVLTALVDMHAKC 325
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++E+A Q D + +T +I GLA G+ AL +F +M ++KPD + +VGVL
Sbjct: 326 GNIEQALSAFREIPQPDAYPYTALISGLATHGHEKLALSVFERMQVQAVKPDPITFVGVL 385
Query: 173 SACTHN 178
+AC+H
Sbjct: 386 TACSHT 391
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
++V TA+V + G ++ A F ++P+ D +TA+I G + AL++F+ M
Sbjct: 310 RNVKVLTALVDMHAKCGNIEQALSAFREIPQPDAYPYTALISGLATHGHEKLALSVFERM 369
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLG 91
Q + D T V +LTA ++ +D G
Sbjct: 370 QVQAVKPDPITFVGVLTACSHTGLVDKG 397
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 64/181 (35%), Gaps = 47/181 (25%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
D +S+ +++ + V A F M R V W AM+ Y+ A +F EM
Sbjct: 147 PDAVSFNSLLCAHARNASVRPAESLFAAMRSRTQVSWNAMVVLYVSAGDLVSARRVFDEM 206
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
T D W + LI YC V
Sbjct: 207 PTR----------------------DTASW-----------------SVLIAGYCKGGLV 227
Query: 124 EKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ A+ K+ + T MI G A +G AL +F + A I+PD VGV+SA
Sbjct: 228 QNARELFDKMPSKNLVARTAMINGYAQTGQPKAALALFRDLEAAGIEPDGATMVGVISAV 287
Query: 176 T 176
+
Sbjct: 288 S 288
>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW+ +VS Y G +++AR FD+MP ++ V WT +I G+ +EA TL+
Sbjct: 246 MPERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLY 305
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M+ + + D+ T++SIL A A L LG+ + I K ++K + NAL+DMY C
Sbjct: 306 NQMEAAGLKPDDGTLISILAACAESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKC 365
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
V+KA +D SW M+ GLA+ G+G+KA+ +FS+M + KPD+V + +L
Sbjct: 366 GRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAIL 425
Query: 173 SACTH 177
ACTH
Sbjct: 426 CACTH 430
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 47/184 (25%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD++SW +++ + G + AR+ FD+M ERD V W ++DGY++ +A LF
Sbjct: 184 MGEKDLVSWNSMIGGLVKAGDLGRARKLFDEMAERDAVSWNTILDGYVKAGEMSQAFNLF 243
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++M N++ W + ++ YC
Sbjct: 244 EKMPERNVV----------------------SW-----------------STMVSGYCKT 264
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
D+E A+ K+ +WT +I G A G +A +++QM A +KPD+ + +L
Sbjct: 265 GDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISIL 324
Query: 173 SACT 176
+AC
Sbjct: 325 AACA 328
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 79/164 (48%), Gaps = 10/164 (6%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ D+ ++S + Q+++A F+Q+ + + L+ +I +++ ++ +A F +
Sbjct: 52 HNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNSQSLKAFATFFD 111
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
MQ + + D FT +L A L + I +++K D+F N+LID Y C
Sbjct: 112 MQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGL 171
Query: 123 V----------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
+ E +KD SW +MI GL +G+ +A +F +M
Sbjct: 172 LGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEM 215
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 26/169 (15%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+V Y G+VD A F++M RD V W M+ G +A+ LF +MQ
Sbjct: 357 ALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKP 416
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDK 130
D+ T+++IL A + +D G +Y N ++ D + I +E
Sbjct: 417 DKVTLIAILCACTHAGFVDQG---LSYF--NSMERD----------HGIVPHIEH----- 456
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC-THN 178
+ MI L G ++A + M ++P++V + +L AC HN
Sbjct: 457 --YGCMIDLLGRGGRLEEAFRLVQSM---PMEPNDVIWGTLLGACRVHN 500
>gi|19071652|gb|AAL84319.1|AC073556_36 putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
Length = 545
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 112/185 (60%), Gaps = 10/185 (5%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD++SW +++ Y RG + +AR+ FDQ+PERD V W MI GY+R AL LF++M
Sbjct: 207 KDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQM 266
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKN--DIFAGNALIDMYCICA 121
Q D T++S+L+A A+ LD+G+ + + + +N + GNALIDMY C
Sbjct: 267 QRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCG 326
Query: 122 DVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
++ A KD +W +++ GLA+ G+ +++DMF +ML+ ++PDE+ +V VL
Sbjct: 327 SMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLI 386
Query: 174 ACTHN 178
AC+H
Sbjct: 387 ACSHG 391
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 12/149 (8%)
Query: 19 RGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM----QTSNIMGDEFT 74
RG + A FDQ+P D ++ +I G R+A++L+ M + D+ T
Sbjct: 55 RGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLT 114
Query: 75 IVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKA 126
+L A + A D G + ++ K ++D F NALI M+ C ++ +A
Sbjct: 115 FPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRA 174
Query: 127 QKDKFSWTTMIVGLAISGNGDKALDMFSQ 155
++D +W+ MI G A G+ A D+F +
Sbjct: 175 REDAVAWSAMITGCARRGDIGAARDLFDE 203
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 71/164 (43%), Gaps = 10/164 (6%)
Query: 6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT 65
V+ A++ Y G + A + F M ++D W +++ G E++ +F++M
Sbjct: 312 VVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLK 371
Query: 66 SNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICA--- 121
+ DE T V++L A ++ +D G E+ K +V+ +I ++DM
Sbjct: 372 GKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLK 431
Query: 122 ------DVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159
D K + + W T++ + G + A Q+L+A
Sbjct: 432 EAFEFIDTMKCEPNSVIWRTLLSACRVHGEIELAKHANRQLLKA 475
>gi|357487459|ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355515352|gb|AES96975.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 525
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 116/183 (63%), Gaps = 9/183 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+V+SW+ ++S Y G VD AR FD+ PE+D +W AMI GY++ + F+E+L LF+ MQ
Sbjct: 172 NVVSWSVMISGYAKVGDVDSARLFFDEAPEKDKGIWGAMISGYVQNSCFKESLYLFRLMQ 231
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK-VKNDIFAGNALIDMYCICADV 123
++I+ DE VSIL+A A+L AL++G WI ++++ K V + +L+DMY C ++
Sbjct: 232 LTDIVPDESIFVSILSACAHLGALEIGVWIHQHLNQLKLVPLSVRLSTSLLDMYAKCGNL 291
Query: 124 EKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E A+ +D W MI G+A+ G+G AL +F M + +KPD++ ++ V +AC
Sbjct: 292 ELAKRLFDSMNMRDVVCWNAMISGMAMHGDGKGALKLFYDMEKVGVKPDDITFIAVFTAC 351
Query: 176 THN 178
+++
Sbjct: 352 SYS 354
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 79/192 (41%), Gaps = 39/192 (20%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A + F+Q+ ++ +I +L N+F+ AL +F +M S + D +TI +L A
Sbjct: 60 ACRVFEQIQNPTVCIYNTLIKAFLVNNKFKSALQVFVKMLQSELKPDNYTIPYVLKACGT 119
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------------------- 123
G+ I Y K + DI+ GN+L+ MYC+ DV
Sbjct: 120 FHDCSFGKMIHGYSSKLGLVFDIYVGNSLMAMYCVFGDVVAARYVFDEIPSLNVVSWSVM 179
Query: 124 ------------------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165
E +KDK W MI G + ++L +F M I PDE
Sbjct: 180 ISGYAKVGDVDSARLFFDEAPEKDKGIWGAMISGYVQNSCFKESLYLFRLMQLTDIVPDE 239
Query: 166 VAYVGVLSACTH 177
+V +LSAC H
Sbjct: 240 SIFVSILSACAH 251
>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
Length = 607
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 114/178 (64%), Gaps = 12/178 (6%)
Query: 12 IVSRYINRGQVDIARQCFDQMPE----RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN 67
I+ Y G++ AR+ F++MPE +D V WTAMIDG++R AL F+ MQ N
Sbjct: 171 IMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGEN 230
Query: 68 IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127
+ +EFTIV +L+A + L AL++G W+ +Y+ K +++ ++F GNALI+MY C +++AQ
Sbjct: 231 VRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQ 290
Query: 128 --------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+D ++ TMI GL+++G +A+++F M+ ++P V +VGVL+AC+H
Sbjct: 291 TVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSH 348
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 12/167 (7%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81
+D A + F + L+TA+IDG++ + +A+ L+ M +I+ D + + SIL A
Sbjct: 80 IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKA 139
Query: 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ------------KD 129
+ AL G + + K + ++ ++++Y C ++ A+ KD
Sbjct: 140 CGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKD 199
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
WT MI G + ++AL+ F M +++P+E V VLSAC+
Sbjct: 200 TVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACS 246
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 25/165 (15%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+++ Y G +D A+ FD+M +RD + + MI G + R+A+ LF+ M +
Sbjct: 275 ALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRP 334
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDK 130
T V +L A ++ +D G I + ++ Y + +E
Sbjct: 335 TNVTFVGVLNACSHGGLVDFGFKIFHSMTRD---------------YGVEPQIEH----- 374
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ L G ++A D+ M + PD + +LSAC
Sbjct: 375 --YGCMVDLLGRVGRLEEAYDLIRTM---KMTPDHIMLGTLLSAC 414
>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 531
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/187 (38%), Positives = 117/187 (62%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMP--ERDYVLWTAMIDGYLRVNRFREALT 58
M+ +DV W A+++ Y G++D AR + MP R+ V WT +I GY R R EA+
Sbjct: 177 MRVRDVNVWNALLAGYGKVGEMDEARGLLEMMPCWVRNAVSWTCVISGYARSGRASEAIE 236
Query: 59 LFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC 118
+FQ M N+ DE T++++L+A A+L +L+LGE I +Y+D + + NA+IDMY
Sbjct: 237 VFQRMLMENVDPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYA 296
Query: 119 ICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
++ KA +++ +WTT+I GLA G+G +AL MF +M++A +KP++V ++
Sbjct: 297 KSGNITKALEVFESVNERNVVTWTTIITGLATHGHGAEALVMFDRMVKAGVKPNDVTFIA 356
Query: 171 VLSACTH 177
+LSAC+H
Sbjct: 357 ILSACSH 363
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 62/127 (48%), Gaps = 1/127 (0%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N+ V A++ Y G + A + F+ + ER+ V WT +I G EAL +F
Sbjct: 282 NRAVSLNNAVIDMYAKSGNITKALEVFESVNERNVVTWTTIITGLATHGHGAEALVMFDR 341
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
M + + ++ T ++IL+A +++ +DLG + + K + +I +ID+
Sbjct: 342 MVKAGVKPNDVTFIAILSACSHVGWVDLGNRFFNSMRSKYGINPNIEHYGCMIDLLGRAG 401
Query: 122 DVEKAQK 128
+ +A++
Sbjct: 402 KLREAEE 408
>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
Length = 547
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 71/186 (38%), Positives = 110/186 (59%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ KD +SW ++S + GQ+ AR+ F MP++ V WTA++ GY V F A+ +F
Sbjct: 178 MREKDAVSWNTLISAHARMGQMRKARELFHSMPDKTVVSWTALVSGYTAVGDFAGAVEVF 237
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++MQ D+ +IV++L A A L AL+LG WI Y +K+ + I+ NAL++MY C
Sbjct: 238 RQMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNKHGMLGKIYICNALMEMYAKC 297
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGV 171
+E+A +KD SW+T I GLA G +A+ +F M R + P+ + +VG+
Sbjct: 298 GCIEEALQLFHGMSEKDVISWSTAIGGLAAHGRAREAVKLFEVMDREGRVMPNGITFVGL 357
Query: 172 LSACTH 177
LSAC+H
Sbjct: 358 LSACSH 363
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 53/216 (24%), Positives = 85/216 (39%), Gaps = 48/216 (22%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM------ 63
T IV G+ A + F +P + L AMI Y + + R+A+ ++ M
Sbjct: 46 TQIVHVCNGHGRAAHAARVFAHVPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPD 105
Query: 64 ---QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+GD FT +L A L A LG + ++ ++ ++ N+LI+MY C
Sbjct: 106 PSSSGGFSVGDRFTYPFLLKACGGLAASQLGRQVHAHVARSGCESHAIVQNSLIEMYTRC 165
Query: 121 ADVEKAQK-------------------------------------DK--FSWTTMIVGLA 141
D+ A+K DK SWT ++ G
Sbjct: 166 GDLSLARKVFDGMREKDAVSWNTLISAHARMGQMRKARELFHSMPDKTVVSWTALVSGYT 225
Query: 142 ISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
G+ A+++F QM +PD+V+ V VL AC
Sbjct: 226 AVGDFAGAVEVFRQMQMEGFEPDDVSIVAVLPACAQ 261
>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 69/178 (38%), Positives = 114/178 (64%), Gaps = 12/178 (6%)
Query: 12 IVSRYINRGQVDIARQCFDQMPE----RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN 67
I+ Y G++ AR+ F++MPE +D V WTAMIDG++R AL F+ MQ N
Sbjct: 178 IMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGEN 237
Query: 68 IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127
+ +EFTIV +L+A + L AL++G W+ +Y+ K +++ ++F GNALI+MY C +++AQ
Sbjct: 238 VRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQ 297
Query: 128 --------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+D ++ TMI GL+++G +A+++F M+ ++P V +VGVL+AC+H
Sbjct: 298 TVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSH 355
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 12/168 (7%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81
+D A + F + L+TA+IDG++ + EA+ L+ M +I+ D + + SIL A
Sbjct: 87 IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKA 146
Query: 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ------------KD 129
+ AL G + + K ++ ++++Y C ++ A+ KD
Sbjct: 147 CGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKD 206
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
WT MI G + ++AL+ F M +++P+E V VLSAC+
Sbjct: 207 TVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQ 254
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 27/166 (16%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+++ Y G +D A+ FD+M +RD + + MI G + R+A+ LF+ M +
Sbjct: 282 ALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRP 341
Query: 71 DEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
T V +L A ++ +D G E + +V+ I ++D+
Sbjct: 342 TNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDL------------- 388
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
L G ++A D+ M + PD + +LSAC
Sbjct: 389 ----------LGRVGRLEEAYDLIRTM---KMTPDHIMLGTLLSAC 421
>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like, partial [Cucumis sativus]
Length = 610
Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 103/186 (55%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D +SW +++ Y N G V+ Q F++MPER+ W +I GY F E L F
Sbjct: 246 MPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCF 305
Query: 61 QEMQTSN-IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+ M ++ ++ T+V++L+A A L ALDLG+W+ Y K I+ GNALIDMY
Sbjct: 306 KRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSK 365
Query: 120 CADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C +E A KD +W +MI GLA G G AL +F QM KPD + ++GV
Sbjct: 366 CGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGV 425
Query: 172 LSACTH 177
L +CTH
Sbjct: 426 LCSCTH 431
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 82/177 (46%), Gaps = 32/177 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++++WT+++S YI +V +AR+ FD PERD VLW M+ GY+ + + A LF
Sbjct: 184 MLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLF 243
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M + M + ++L AN D+ A L +
Sbjct: 244 DTMPYRDTM----SWNTMLNGYAN-------------------NGDVEACEQLFE----- 275
Query: 121 ADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGVLSACT 176
E +++ FSW +I G A +G + L F +ML + P++ V VLSAC
Sbjct: 276 ---EMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACA 329
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 8/136 (5%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
+V+ ++ Q+ AR FD P+ LW A+ GY +RE + LF +M++ ++ +
Sbjct: 63 VVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPN 122
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA----- 126
FT +L + A + A GE I + K ++ + F LID+Y + A
Sbjct: 123 CFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFV 182
Query: 127 ---QKDKFSWTTMIVG 139
+++ +WT+MI G
Sbjct: 183 GMLERNIVAWTSMISG 198
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 73/165 (44%), Gaps = 25/165 (15%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G ++ A + F+ M +D + W +MI G +ALTLF +M+ +
Sbjct: 358 ALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKP 417
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDK 130
D T + +L + +L ++ G +Y N++++ Y I +E
Sbjct: 418 DGITFIGVLCSCTHLGLVEEG---TSYF------------NSMVNEYSIAPQIEH----- 457
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ +G D+A++ +M ++ D V + +L AC
Sbjct: 458 --YGCMVDLFGRAGLLDRAIEFVKRM---PMEADAVIWAALLGAC 497
>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 652
Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 103/186 (55%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D +SW +++ Y N G V+ Q F++MPER+ W +I GY F E L F
Sbjct: 288 MPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCF 347
Query: 61 QEMQTSN-IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+ M ++ ++ T+V++L+A A L ALDLG+W+ Y K I+ GNALIDMY
Sbjct: 348 KRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSK 407
Query: 120 CADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C +E A KD +W +MI GLA G G AL +F QM KPD + ++GV
Sbjct: 408 CGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGV 467
Query: 172 LSACTH 177
L +CTH
Sbjct: 468 LCSCTH 473
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 82/177 (46%), Gaps = 32/177 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++++WT+++S YI +V +AR+ FD PERD VLW M+ GY+ + + A LF
Sbjct: 226 MLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLF 285
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M + M + ++L AN D+ A L +
Sbjct: 286 DTMPYRDTM----SWNTMLNGYAN-------------------NGDVEACEQLFE----- 317
Query: 121 ADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGVLSACT 176
E +++ FSW +I G A +G + L F +ML + P++ V VLSAC
Sbjct: 318 ---EMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACA 371
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 8/136 (5%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
+V+ ++ Q+ AR FD P+ LW A+ GY +RE + LF +M++ ++ +
Sbjct: 105 VVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPN 164
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA----- 126
FT +L + A + A GE I + K ++ + F LID+Y + A
Sbjct: 165 CFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFV 224
Query: 127 ---QKDKFSWTTMIVG 139
+++ +WT+MI G
Sbjct: 225 GMLERNIVAWTSMISG 240
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 73/165 (44%), Gaps = 25/165 (15%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G ++ A + F+ M +D + W +MI G +ALTLF +M+ +
Sbjct: 400 ALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKP 459
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDK 130
D T + +L + +L ++ G +Y N++++ Y I +E
Sbjct: 460 DGITFIGVLCSCTHLGLVEEG---TSYF------------NSMVNEYSIAPQIEH----- 499
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ +G D+A++ +M ++ D V + +L AC
Sbjct: 500 --YGCMVDLFGRAGLLDRAIEFVKRM---PMEADAVIWAALLGAC 539
>gi|242072866|ref|XP_002446369.1| hypothetical protein SORBIDRAFT_06g014910 [Sorghum bicolor]
gi|241937552|gb|EES10697.1| hypothetical protein SORBIDRAFT_06g014910 [Sorghum bicolor]
Length = 474
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 108/183 (59%), Gaps = 8/183 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
DV+S+ A++ Y+N G+V +AR+ F++MP RD W +I G + R EA+ LF M
Sbjct: 161 PDVVSYNALMHAYVNAGRVGVAREVFEEMPVRDATSWGTVIAGCAKAGRLEEAVLLFDRM 220
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ D +V++L+ A L ALD G+ + YI ++ ++F L+D+Y C V
Sbjct: 221 REEGFRPDSVALVAVLSCCAQLGALDKGQEVHEYIKLSRTSPNVFLCTGLVDLYAKCGCV 280
Query: 124 EKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E+A+ ++ F+W +IVGLA+ G+G AL+ F+QML I+ D V ++GVL AC
Sbjct: 281 EEAREVFEACQDRNVFTWNALIVGLAMHGHGTVALEYFNQMLADGIQSDGVTFLGVLIAC 340
Query: 176 THN 178
+HN
Sbjct: 341 SHN 343
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 10/157 (6%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ +V T +V Y G V+ AR+ F+ +R+ W A+I G AL F +
Sbjct: 261 SPNVFLCTGLVDLYAKCGCVEEAREVFEACQDRNVFTWNALIVGLAMHGHGTVALEYFNQ 320
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYID-KNKVKNDIFAGNALIDMYCICA 121
M I D T + +L A ++ +D+ I + ++ K+ V ++ + D+
Sbjct: 321 MLADGIQSDGVTFLGVLIACSHNGLVDMARRIFSDMESKHNVHRELKHYGCMADLLGRAG 380
Query: 122 DVEKA---------QKDKFSWTTMIVGLAISGNGDKA 149
+E+A + D + W ++ G + N + A
Sbjct: 381 LIEEAMDMVRKMPMEGDSYVWGGILAGCRMHRNVEAA 417
>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 600
Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats.
Identities = 73/186 (39%), Positives = 105/186 (56%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW+ +VS Y +G +++AR FD+MP ++ V WT M+ + EA LF
Sbjct: 242 MPERNVVSWSTVVSGYCKKGDMEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGKLF 301
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M+ +++ D +VSIL A A +L LG+ I Y+ ++ NALIDM+C C
Sbjct: 302 TQMKEASVELDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNALIDMFCKC 361
Query: 121 A---------DVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
D E +KD SW T+I G A+ G+GDKALD F+QM PD V + V
Sbjct: 362 GCINRADYVFDTEIVEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFCPDAVTMINV 421
Query: 172 LSACTH 177
LSACTH
Sbjct: 422 LSACTH 427
Score = 85.1 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 31/178 (17%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW + ++ + +G+V+ AR+ FD+M E+D V W ++DGY + EA LF
Sbjct: 180 MPRRDVVSWNSAMAAMVRQGEVEGARRMFDEMLEKDTVSWNTLLDGYTKAGDVEEAFKLF 239
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
Q M N++ T+VS + ++ E + DK KN +
Sbjct: 240 QCMPERNVVSWS-TVVSGYCKKGDM------EMARVIFDKMPTKNLV------------- 279
Query: 121 ADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+WT M+ A +G ++A +F+QM AS++ D A V +L+AC +
Sbjct: 280 -----------TWTIMVSACAQNGLVEEAGKLFTQMKEASVELDVAAVVSILAACAES 326
Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 26/166 (15%)
Query: 11 AIVSRYINRGQVDIARQCFD-QMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
A++ + G ++ A FD ++ E+D V W +I G+ +AL F +M+
Sbjct: 353 ALIDMFCKCGCINRADYVFDTEIVEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFC 412
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
D T++++L+A ++ ++ G ++++ Y + +E
Sbjct: 413 PDAVTMINVLSACTHMGFVEEGRRYFANMERD---------------YGVVPQIEH---- 453
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ MI L G +A+D+ M P+EV + +LSAC
Sbjct: 454 ---YGCMIDLLGRGGLIKEAVDLIKSM---PWDPNEVIWGSLLSAC 493
>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
[Vitis vinifera]
Length = 603
Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats.
Identities = 64/183 (34%), Positives = 110/183 (60%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++DV+ T ++ Y G ++ A + F++MP RD V W +MI Y + EAL ++ +
Sbjct: 158 DQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQ 217
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M+ SN+ D FT+VS+L++ A++ AL +G + + + ++ +IF GNALIDMY C
Sbjct: 218 MRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGS 277
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+ A ++D F+W +MIVG + G GD+A+ F ML A ++P+ + ++G+L
Sbjct: 278 LASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCG 337
Query: 175 CTH 177
C+H
Sbjct: 338 CSH 340
>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats.
Identities = 64/183 (34%), Positives = 110/183 (60%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++DV+ T ++ Y G ++ A + F++MP RD V W +MI Y + EAL ++ +
Sbjct: 140 DQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQ 199
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M+ SN+ D FT+VS+L++ A++ AL +G + + + ++ +IF GNALIDMY C
Sbjct: 200 MRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGS 259
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+ A ++D F+W +MIVG + G GD+A+ F ML A ++P+ + ++G+L
Sbjct: 260 LASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCG 319
Query: 175 CTH 177
C+H
Sbjct: 320 CSH 322
>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 111/182 (60%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
K SW +++ + G VD AR F+++PE+D V W M++ Y++ + F E+ +F +M
Sbjct: 432 KSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKM 491
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
Q+SN+ D+ T++S+L++ A + AL+ G W+ YI+KN++ D G ALIDMY C V
Sbjct: 492 QSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCV 551
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E A +K+ F WT M+ A+ G +A+D++ +M +KPD V ++ +L+AC
Sbjct: 552 EMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAAC 611
Query: 176 TH 177
+H
Sbjct: 612 SH 613
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 107/210 (50%), Gaps = 39/210 (18%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+ WT +VS Y+ ++D ARQ FD+M ER V WT M+ GY++ + E+L LFQ+M+
Sbjct: 301 DVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMR 360
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
N++ DE +V++L+A +L DLG + +I + D F GNAL+D+Y C ++
Sbjct: 361 FENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLD 420
Query: 125 KAQ--------KDKFSWTTMIVGLAISGNGDKALD------------------------- 151
+A K SW +M+ G SG DKA D
Sbjct: 421 EALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDL 480
Query: 152 ------MFSQMLRASIKPDEVAYVGVLSAC 175
+F +M +++KPD+ + +LS+C
Sbjct: 481 FNESFEIFCKMQSSNVKPDKTTLISLLSSC 510
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 45/209 (21%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
++ Y G++ Q F++M RD + W MI Y+ +REAL LF EM S ++ D
Sbjct: 174 LMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPD 233
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNK--VKNDIFAGNALIDMYCICADVEKA--- 126
E T+VS+++ A L+ L++G+ + YI NK ++ + N L+DMY C +++A
Sbjct: 234 EITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLL--NCLVDMYSKCGKMDEAHGL 291
Query: 127 --------------------------------------QKDKFSWTTMIVGLAISGNGDK 148
++ SWTTM+ G G +
Sbjct: 292 LSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCE 351
Query: 149 ALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+L++F QM ++ PDEVA V VLSAC H
Sbjct: 352 SLELFQQMRFENVIPDEVALVTVLSACVH 380
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + TA++ Y G V++A + F Q+ E++ +WTAM+ Y + EA+ L+ EM+
Sbjct: 534 DAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEME 593
Query: 65 TSNIMGDEFTIVSILTARANLRALDLG 91
+ D T +++L A ++ +D G
Sbjct: 594 ERGVKPDHVTFIALLAACSHGGLVDEG 620
>gi|255566945|ref|XP_002524455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536243|gb|EEF37895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 486
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 114/180 (63%), Gaps = 8/180 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+DV+S+TA+++ Y +RG +D A + FD++P RD V W AMI GY + RF EAL F+EM
Sbjct: 188 RDVVSYTALITGYASRGFLDQALELFDEIPVRDVVSWNAMIAGYTQSGRFEEALIFFEEM 247
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+N+ + T++S+L+A A +L +G W+ ++I+++ ++++I NALIDMY C D+
Sbjct: 248 LRANVTPNMSTLLSVLSACAQSGSLKMGNWVSSWIEEHGLESNIKVMNALIDMYAKCGDL 307
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E A K+ SW MI G +AL +F QML+++++P++V + +L AC
Sbjct: 308 ENALHLFEGIKNKNVISWNVMIGGYTHLSCYKEALGLFRQMLQSNVEPNDVTLLSILPAC 367
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 105/179 (58%), Gaps = 15/179 (8%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G ++ A F+ + ++ + W MI GY ++ ++EAL LF++M SN+
Sbjct: 296 ALIDMYAKCGDLENALHLFEGIKNKNVISWNVMIGGYTHLSCYKEALGLFRQMLQSNVEP 355
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNA----LIDMYCICADVEKA 126
++ T++SIL A ANL AL LG+WI YIDKN +KN A NA LIDMY C ++E A
Sbjct: 356 NDVTLLSILPACANLGALGLGKWIHAYIDKN-MKN--LANNALWTSLIDMYAKCGNIEVA 412
Query: 127 Q--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
K SW MI G A+ G D A+ +FS+M + + PD + ++GVLSAC H
Sbjct: 413 NQIFDGMNPKSLASWNAMISGFAMHGQADLAISLFSRMTKEGLVPDNITFIGVLSACNH 471
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%)
Query: 9 WTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI 68
WT+++ Y G +++A Q FD M + W AMI G+ + A++LF M +
Sbjct: 396 WTSLIDMYAKCGNIEVANQIFDGMNPKSLASWNAMISGFAMHGQADLAISLFSRMTKEGL 455
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYID 99
+ D T + +L+A + LDLG +ID
Sbjct: 456 VPDNITFIGVLSACNHAGLLDLGHINHFHID 486
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 79/203 (38%), Gaps = 42/203 (20%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
++S Y G + A F + + + ++W +I G A+ + +M +S +
Sbjct: 67 VISPY---GDLSYALLLFKSIGKPNQIIWNNIIRGLSLSESPILAIQYYVDMISSGFTPN 123
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ---- 127
+T +L + A + + G+ I I K ND F +LI MY ++ A+
Sbjct: 124 TYTYPFVLKSCARISSTHEGKQIHGQILKLGFDNDAFVHTSLITMYVQNGELGNARLVFE 183
Query: 128 -----------------------------------KDKFSWTTMIVGLAISGNGDKALDM 152
+D SW MI G SG ++AL
Sbjct: 184 RSSMRDVVSYTALITGYASRGFLDQALELFDEIPVRDVVSWNAMIAGYTQSGRFEEALIF 243
Query: 153 FSQMLRASIKPDEVAYVGVLSAC 175
F +MLRA++ P+ + VLSAC
Sbjct: 244 FEEMLRANVTPNMSTLLSVLSAC 266
>gi|414589212|tpg|DAA39783.1| TPA: hypothetical protein ZEAMMB73_012385 [Zea mays]
Length = 590
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 108/187 (57%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+SWTA+VS Y G++D AR FDQMP+++ V W AMI GY R+ +AL F
Sbjct: 272 MDRKDVVSWTAMVSAYAKIGELDSARVLFDQMPDKNLVSWNAMITGYNHNLRYDDALCTF 331
Query: 61 QEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
Q+M M DE T+VS+++A A L +++ WI +YI K+ + GNAL+DM+
Sbjct: 332 QQMMLEGRFMPDEATLVSVVSACAQLGSVEYCNWISSYISKSNTHITVALGNALVDMFAK 391
Query: 120 CADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C DV +A + +WTTMI G A +G +AL +++ M R + D+ +V
Sbjct: 392 CGDVGRAHLVFNKMKTRCTITWTTMISGFAYNGQFREALLVYNDMCREGVTLDDTVFVAA 451
Query: 172 LSACTHN 178
L AC H
Sbjct: 452 LGACAHG 458
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 80/186 (43%), Gaps = 17/186 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M N+DV+SW +IV Y++ G A + F+ MPER+ V W ++ + R A +F
Sbjct: 179 MANRDVVSWNSIVGVYMSNGDAAGAMELFEAMPERNVVSWNTIVAAFTRAGDMVSARAVF 238
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M + + I T+ A L + + + D+ + A++ Y
Sbjct: 239 DRMPIRDAISWNLMISGYATSGNVESAWSLFDIMD--------RKDVVSWTAMVSAYAKI 290
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQ-MLRASIKPDEVAYVGV 171
+++ A+ K+ SW MI G + D AL F Q ML PDE V V
Sbjct: 291 GELDSARVLFDQMPDKNLVSWNAMITGYNHNLRYDDALCTFQQMMLEGRFMPDEATLVSV 350
Query: 172 LSACTH 177
+SAC
Sbjct: 351 VSACAQ 356
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 13/96 (13%)
Query: 73 FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------- 123
FT +L A +LR L L + I + +D+ NAL+++Y C+D
Sbjct: 116 FTFTFLLRACESLRRLFLCRCVHGQIVRCGFGSDVVVQNALLNVYYKCSDPGDVGIARQV 175
Query: 124 --EKAQKDKFSWTTMIVGLAIS-GNGDKALDMFSQM 156
E A +D SW + IVG+ +S G+ A+++F M
Sbjct: 176 FDEMANRDVVSWNS-IVGVYMSNGDAAGAMELFEAM 210
>gi|297818204|ref|XP_002876985.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322823|gb|EFH53244.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 451
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 106/184 (57%), Gaps = 9/184 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + ++SWT ++ ++ Q+D A F+QMP R+ V WTAMI Y++ R EA LF
Sbjct: 179 MPGRSIVSWTTMLYGLVSNSQLDSAEIVFNQMPTRNVVSWTAMITAYVKNRRPDEAFQLF 238
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ MQ ++ +EFTIV++L A L +L +G W+ Y KN D + G ALIDMY C
Sbjct: 239 RRMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCYLGTALIDMYSKC 298
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMF-SQMLRASIKPDEVAYVGV 171
++ A+ K +W +MI L + G G++AL +F AS++PD + +VGV
Sbjct: 299 GSLQDARKVFDVMQSKSLATWNSMITSLGVHGCGEEALYLFEEMEEEASVEPDAITFVGV 358
Query: 172 LSAC 175
LSAC
Sbjct: 359 LSAC 362
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 65/145 (44%), Gaps = 8/145 (5%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G+ A F+Q+ W MI ++ REAL LF M + D+FT ++
Sbjct: 66 GETQYASLVFNQLQSPSTFTWNLMIRSLSLNHKPREALLLFILMLSHQPQFDKFTFPFVI 125
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--DKF------ 131
A +L LG + K ND+F N L+D+Y C + +K DK
Sbjct: 126 KACLASSSLRLGTQVHGLAIKAGFFNDVFFQNTLMDLYFKCGKPDCGRKVFDKMPGRSIV 185
Query: 132 SWTTMIVGLAISGNGDKALDMFSQM 156
SWTTM+ GL + D A +F+QM
Sbjct: 186 SWTTMLYGLVSNSQLDSAEIVFNQM 210
>gi|414879991|tpg|DAA57122.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 868
Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats.
Identities = 67/186 (36%), Positives = 113/186 (60%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+SW +++ + G+V+ AR FDQMP R+ V WT +IDGY R + EALTL
Sbjct: 540 MPVKNVVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLL 599
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M I E T+++++ A +NL + +GE + Y +K + +D GN+LID+Y
Sbjct: 600 RHMMAGGISPSEITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKI 659
Query: 121 ADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
V+ + +++ SWT++I G A+ G +AL++F++M RA IKP+ + ++ V
Sbjct: 660 GSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSV 719
Query: 172 LSACTH 177
++AC+H
Sbjct: 720 INACSH 725
Score = 38.9 bits (89), Expect = 0.92, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 13/140 (9%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A + FDQ P W A + Y EAL LF+ + ++ D F +L A A
Sbjct: 437 ALKVFDQSPAP----WRAFLKAYSHGPFPLEALHLFKHAR-QHLADDTFVFTFVLKACAG 491
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTM 136
L G + + + + + ALI++Y + + +A+K + SW M
Sbjct: 492 LGWHRAGAQLHALVVQKGFEFHAYVHTALINVYVMSRCLVEARKVFDEMPVKNVVSWNVM 551
Query: 137 IVGLAISGNGDKALDMFSQM 156
I G A G + A +F QM
Sbjct: 552 ITGFAGWGEVEYARLLFDQM 571
>gi|90265157|emb|CAH67783.1| H0201G08.10 [Oryza sativa Indica Group]
Length = 530
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 12/190 (6%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ I+W A++ +Y G+VD A + F MP RD V W ++ GY R REAL LF
Sbjct: 176 MPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRCREALGLF 235
Query: 61 QEMQTSN---IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
++M + + + + T+ +IL A A L+ G W+ YI++N++ +D + LIDMY
Sbjct: 236 RQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMY 295
Query: 118 CICADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
C C ++ A +KD FSWTT+I GLA+ G AL MF M I PD+V
Sbjct: 296 CKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGRTTDALRMFDMMQDNGICPDDVTL 355
Query: 169 VGVLSACTHN 178
VGVL+AC H
Sbjct: 356 VGVLNACAHG 365
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 85/217 (39%), Gaps = 56/217 (25%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++S Y G D AR+ FD+MPE+ V TAM ++ + +A+ +F +M +
Sbjct: 49 TALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVF 108
Query: 70 GDEFTIVSIL---------TARANLRALDLGEWIKTYIDKNKVKNDIFAG---------- 110
D + L TAR N G+ I + + + D+F
Sbjct: 109 PDNVAVAVALGACHGAGSWTARRN-----PGKMIHALVVTSGIVPDVFVSTELIRVYGES 163
Query: 111 ---------------------NALIDMYCICADVEKA--------QKDKFSWTTMIVGLA 141
NA++ Y V+ A ++D SW T++ G
Sbjct: 164 GELPVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYC 223
Query: 142 ISGNGDKALDMFSQMLRAS---IKPDEVAYVGVLSAC 175
++G +AL +F QM+ S + P+ +L AC
Sbjct: 224 VAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGAC 260
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 12 IVSRYINRGQVDIARQCFDQMP-ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
++ Y G +D A Q F++ P ++D WT +I G R +AL +F MQ + I
Sbjct: 291 LIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGRTTDALRMFDMMQDNGICP 350
Query: 71 DEFTIVSILTARANLRALDLG 91
D+ T+V +L A A+ +D G
Sbjct: 351 DDVTLVGVLNACAHGGLVDEG 371
>gi|125546973|gb|EAY92795.1| hypothetical protein OsI_14599 [Oryza sativa Indica Group]
Length = 530
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 12/190 (6%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ I+W A++ +Y G+VD A + F MP RD V W ++ GY R REAL LF
Sbjct: 176 MPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRCREALGLF 235
Query: 61 QEMQTSN---IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
++M + + + + T+ +IL A A L+ G W+ YI++N++ +D + LIDMY
Sbjct: 236 RQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMY 295
Query: 118 CICADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
C C ++ A +KD FSWTT+I GLA+ G AL MF M I PD+V
Sbjct: 296 CKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGRTTDALRMFDMMQDNGICPDDVTL 355
Query: 169 VGVLSACTHN 178
VGVL+AC H
Sbjct: 356 VGVLNACAHG 365
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 85/217 (39%), Gaps = 56/217 (25%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++S Y G D AR+ FD+MPE+ V TAM ++ + +A+ +F +M +
Sbjct: 49 TALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVF 108
Query: 70 GDEFTIVSIL---------TARANLRALDLGEWIKTYIDKNKVKNDIFAG---------- 110
D + L TAR N G+ I + + + D+F
Sbjct: 109 PDNVAVAVALGACHGAGSWTARRN-----PGKMIHALVVTSGIVPDVFVSTELIRVYGES 163
Query: 111 ---------------------NALIDMYCICADVEKA--------QKDKFSWTTMIVGLA 141
NA++ Y V+ A ++D SW T++ G
Sbjct: 164 GELPVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYC 223
Query: 142 ISGNGDKALDMFSQMLRAS---IKPDEVAYVGVLSAC 175
++G +AL +F QM+ S + P+ +L AC
Sbjct: 224 VAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGAC 260
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 12 IVSRYINRGQVDIARQCFDQMP-ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
++ Y G +D A Q F++ P ++D WT +I G R +AL +F MQ + I
Sbjct: 291 LIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGRTTDALRMFDMMQDNGICP 350
Query: 71 DEFTIVSILTARANLRALDLG 91
D+ T+V +L A A+ +D G
Sbjct: 351 DDVTLVGVLNACAHGGLVDEG 371
>gi|224126363|ref|XP_002329535.1| predicted protein [Populus trichocarpa]
gi|222870244|gb|EEF07375.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 113/217 (52%), Gaps = 39/217 (17%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDG-------------- 46
M +D+ +W +++S Y+ G ++ AR FD+MP RD V W MIDG
Sbjct: 250 MYERDIFTWNSMISGYVGVGDMEAARGLFDKMPSRDVVSWNCMIDGFARIKDVSMAAKFF 309
Query: 47 -----------------YLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALD 89
YLR ++ + L F M + + DE ++VS+LTA A L+ LD
Sbjct: 310 DEMPLRNVVSWNVMLALYLRCKKYSDCLRFFDMMVGGDFVPDEASLVSVLTACAELKMLD 369
Query: 90 LGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLA 141
G+W+ +Y+ N +K D+ AL+ MY C ++ A +K SW +MI+G
Sbjct: 370 QGKWVHSYMKDNGIKPDMLLSTALLTMYAKCGAMDLAREVFDKMPEKSVVSWNSMIIGYG 429
Query: 142 ISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
I G+GDKAL+MF +M + P++ ++ VLSAC+H+
Sbjct: 430 IHGHGDKALEMFREMEKGGPMPNDATFMSVLSACSHS 466
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 69/179 (38%), Gaps = 47/179 (26%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D++SW +++ Y+ G++ +AR+ FD+M ERD W +MI GY+ V A LF +M
Sbjct: 223 DLVSWNSMIDGYVKNGELGLAREIFDEMYERDIFTWNSMISGYVGVGDMEAARGLFDKMP 282
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ D+ + N +ID + DV
Sbjct: 283 S---------------------------------------RDVVSWNCMIDGFARIKDVS 303
Query: 125 KAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
A K + SW M+ L F M+ PDE + V VL+AC
Sbjct: 304 MAAKFFDEMPLRNVVSWNVMLALYLRCKKYSDCLRFFDMMVGGDFVPDEASLVSVLTAC 362
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 67/162 (41%), Gaps = 14/162 (8%)
Query: 14 SRYINR-----GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN- 67
SRYI + V ++ + E D + ++ ++ VN AL + E +
Sbjct: 94 SRYIKKLCACLNSVSHCVSLYNHIEEPDAFMCNTIMRSFVNVNDPFGALRFYYEKMIAKW 153
Query: 68 IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127
++ + +T + A++ +L G+ + + K + D+F N+ I Y +C A+
Sbjct: 154 VLPNHYTFPLVAKVCADIGSLREGQKVHALVVKFGFELDLFVRNSFIRFYSVCGRTSDAR 213
Query: 128 K--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASI 161
D SW +MI G +G A ++F +M I
Sbjct: 214 MVFDNGFVLDLVSWNSMIDGYVKNGELGLAREIFDEMYERDI 255
>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 780
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 102/186 (54%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD++SWT ++ + G D A FD MP + W A+I Y + + R AL+LF
Sbjct: 335 MSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLF 394
Query: 61 QEMQTS-NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
EMQ S + DE T++ L A A L A+D G WI YI K+ + + +L+DMY
Sbjct: 395 HEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAK 454
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C ++ KA +KD + W+ MI LA+ G G ALD+FS ML A IKP+ V + +
Sbjct: 455 CGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNI 514
Query: 172 LSACTH 177
L AC H
Sbjct: 515 LCACNH 520
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 87/162 (53%), Gaps = 8/162 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ D+ ++++ Y + G D+A + F MP +D V W AMI+ + +AL LFQE
Sbjct: 205 SSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQE 264
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M+ ++ + T+VS+L+A A L+ G WI +YI+ N + NA++DMY C
Sbjct: 265 MEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGC 324
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
+ A +KD SWTTM+ G A GN D+A +F M
Sbjct: 325 INDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAM 366
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 78/161 (48%), Gaps = 9/161 (5%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-QTSNIMGDEFTIVSILTARA 83
A+ F+Q+P+ + W +I GY + ++ +F M + + ++FT + A +
Sbjct: 125 AKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAAS 184
Query: 84 NLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTT 135
L+ L LG + + K + +D+F N+LI+ Y + A KD SW
Sbjct: 185 RLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNA 244
Query: 136 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
MI A+ G DKAL +F +M +KP+ + V VLSAC
Sbjct: 245 MINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACA 285
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T+++ Y G ++ A + F + +D +W+AMI + + AL LF M + I
Sbjct: 446 TSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIK 505
Query: 70 GDEFTIVSILTARANLRALDLGE 92
+ T +IL A + ++ GE
Sbjct: 506 PNAVTFTNILCACNHAGLVNEGE 528
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 115/185 (62%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV++W ++++ I +G + A F +MPER+ WT+MI GY++ + +EA+ LF
Sbjct: 189 MPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLF 248
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M+ + + +E T+V++L A A+L ALDLG I Y +++ K ++ N LIDMY C
Sbjct: 249 AKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKC 308
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E+A ++ SW+ MI GLA+ G ++AL +FS M + I+P+ V ++G+L
Sbjct: 309 GCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLL 368
Query: 173 SACTH 177
AC+H
Sbjct: 369 HACSH 373
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 80/189 (42%), Gaps = 40/189 (21%)
Query: 27 QCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLR 86
+C ++ +V W + + + +A+ LF ++ ++ D FT S+L A NL
Sbjct: 84 KCVEKQKPETFV-WNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLL 142
Query: 87 ALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA-------------------- 126
L G + ++K +++++ N ++ +Y C ++ +A
Sbjct: 143 DLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIA 202
Query: 127 -------------------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 167
+++ SWT+MI G G +A+ +F++M A +K +EV
Sbjct: 203 QLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVT 262
Query: 168 YVGVLSACT 176
V VL+AC
Sbjct: 263 VVAVLAACA 271
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
++ Y+ G ++ A + F++M ER V W+AMI G R EAL LF +M I +
Sbjct: 301 LIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPN 360
Query: 72 EFTIVSILTARANLRALDLG 91
T + +L A +++ + G
Sbjct: 361 GVTFIGLLHACSHMGLISEG 380
>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 110/185 (59%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW+ +V Y G +D+AR FD+MP ++ V WT MI GY ++A+ L+
Sbjct: 240 MPARNVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLY 299
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M+ + + D+ T++SIL+A A L LG+ + I++ + K NALIDMY C
Sbjct: 300 NQMEEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKC 359
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E A +KD SW +I GLA+ G+G+KAL +FS+M PD+V +VGVL
Sbjct: 360 GSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVL 419
Query: 173 SACTH 177
ACTH
Sbjct: 420 CACTH 424
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 31/176 (17%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D +SW +++ + G++ AR+ FD+MPERD V W ++DGY++ A LF
Sbjct: 178 MAERDTVSWNSMIGGLVKVGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELF 237
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++M N++ + +++ + +D+ + DK VKN +
Sbjct: 238 EKMPARNVV----SWSTMVLGYSKAGDMDMA---RILFDKMPVKNLV------------- 277
Query: 121 ADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
WT MI G A G A+++++QM A +K D+ + +LSAC
Sbjct: 278 -----------PWTIMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVISILSACA 322
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 72/146 (49%), Gaps = 10/146 (6%)
Query: 21 QVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80
Q+ +A F+Q+ + D +L+ +I ++R + A ++F EMQ S + D FT +L
Sbjct: 64 QMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLK 123
Query: 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC-----ADVEK-----AQKDK 130
A + + + E I ++K DIF N+LID Y C A K A++D
Sbjct: 124 ACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDT 183
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQM 156
SW +MI GL G +A +F +M
Sbjct: 184 VSWNSMIGGLVKVGELGEARRLFDEM 209
>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/181 (40%), Positives = 108/181 (59%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV + TA+V Y + A Q FD+MPER+ V W A+I GY +F +A+ F+ M
Sbjct: 123 DVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGML 182
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA--- 121
E T+V +L+A ++L A + G+WI +I N+++ ++F G ALIDMY C
Sbjct: 183 ADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVY 242
Query: 122 DVEKA-----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+VEK +K+ ++W +I G A++G GD AL FS+ML + KPDEV ++GVL AC
Sbjct: 243 EVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACC 302
Query: 177 H 177
H
Sbjct: 303 H 303
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 23/178 (12%)
Query: 8 SWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN 67
S I S+Y RG ++ ++QC +MI YL +N+ +L +F M +
Sbjct: 40 SIARIFSKY--RGSIN-SQQC------------NSMIRTYLDLNKHLNSLYIFALMHKFS 84
Query: 68 IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV---- 123
I+ D T ++L A A L +G+ I + + D++ AL+ +YC C +
Sbjct: 85 ILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDAS 144
Query: 124 ----EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
E +++ +W +I G + KA+D F ML +P E V VLSAC+H
Sbjct: 145 QLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSH 202
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 25/171 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+V TA++ Y G V + F+++ E++ W +I GY + AL F M
Sbjct: 224 NVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRML 283
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
N DE T + +L A + + G W + + F I+ Y D+
Sbjct: 284 MENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQ------FGLQPRIEHYGCMVDL- 336
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
L +G ++AL++ M SI+PD + + +L AC
Sbjct: 337 ---------------LGRAGLLEEALELIQSM---SIEPDPIIWRALLCAC 369
>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
Length = 606
Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats.
Identities = 68/185 (36%), Positives = 115/185 (62%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV++W ++++ I +G + A F +MPER+ WT+MI GY++ + +EA+ LF
Sbjct: 189 MPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLF 248
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M+ + + +E T+V++L A A+L ALDLG I Y +++ K ++ N LIDMY C
Sbjct: 249 AKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKC 308
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E+A ++ SW+ MI GLA+ G ++AL +FS M + I+P+ V ++G+L
Sbjct: 309 GCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLL 368
Query: 173 SACTH 177
AC+H
Sbjct: 369 HACSH 373
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 44/194 (22%), Positives = 83/194 (42%), Gaps = 45/194 (23%)
Query: 25 ARQCFD----QMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80
A+Q F+ Q PE +W + + + +A+ LF ++ ++ D FT S+L
Sbjct: 79 AQQIFECVEKQKPET--FVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLR 136
Query: 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA-------------- 126
A NL L G + ++K +++++ N ++ +Y C ++ +A
Sbjct: 137 ACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVT 196
Query: 127 -------------------------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI 161
+++ SWT+MI G G +A+ +F++M A +
Sbjct: 197 WNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGV 256
Query: 162 KPDEVAYVGVLSAC 175
K +EV V VL+AC
Sbjct: 257 KCNEVTVVAVLAAC 270
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
++ Y+ G ++ A + F++M ER V W+AMI G R EAL LF +M I +
Sbjct: 301 LIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPN 360
Query: 72 EFTIVSILTARANLRALDLG 91
T + +L A +++ + G
Sbjct: 361 GVTFIGLLHACSHMGLISEG 380
>gi|115456858|ref|NP_001052029.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|38345581|emb|CAE01779.2| OSJNBa0027H06.17 [Oryza sativa Japonica Group]
gi|113563600|dbj|BAF13943.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|125589117|gb|EAZ29467.1| hypothetical protein OsJ_13541 [Oryza sativa Japonica Group]
gi|215736988|dbj|BAG95917.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 531
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 107/190 (56%), Gaps = 12/190 (6%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ I+W A++ +Y G+VD A + F MP RD V W ++ GY R REAL LF
Sbjct: 177 MPSRSTITWNAMLHQYARHGKVDTAYELFLAMPRRDVVSWNTVMAGYCVAGRCREALGLF 236
Query: 61 QEMQTSN---IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
++M + + + + T+ +IL A A L+ G W+ YI++N++ +D + LIDMY
Sbjct: 237 RQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMY 296
Query: 118 CICADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
C C ++ A ++D FSWTT+I GLA+ G AL MF M I PD+V
Sbjct: 297 CKCGSIDNALQVFEKAPRKRDLFSWTTVICGLAMHGRATDALRMFDMMQDNGICPDDVTL 356
Query: 169 VGVLSACTHN 178
VGVL+AC H
Sbjct: 357 VGVLNACAHG 366
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 85/218 (38%), Gaps = 56/218 (25%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++S Y G D AR+ FD+MPE+ V TAM ++ + +A+ +F +M +
Sbjct: 50 TALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVF 109
Query: 70 GDEFTIVSIL---------TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
D + L TAR N G+ I I + ++ D+F LI +Y C
Sbjct: 110 PDNVALAVALGACHGAGSWTARRN-----PGKKIHALIVTSGIEPDVFVSTELIRVYGEC 164
Query: 121 ADVEKA---------------------------------------QKDKFSWTTMIVGLA 141
+ + ++D SW T++ G
Sbjct: 165 GKLAVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYELFLAMPRRDVVSWNTVMAGYC 224
Query: 142 ISGNGDKALDMFSQMLRAS---IKPDEVAYVGVLSACT 176
++G +AL +F QM+ S + P+ +L AC
Sbjct: 225 VAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACA 262
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 12 IVSRYINRGQVDIARQCFDQMP-ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
++ Y G +D A Q F++ P +RD WT +I G R +AL +F MQ + I
Sbjct: 292 LIDMYCKCGSIDNALQVFEKAPRKRDLFSWTTVICGLAMHGRATDALRMFDMMQDNGICP 351
Query: 71 DEFTIVSILTARANLRALDLG 91
D+ T+V +L A A+ +D G
Sbjct: 352 DDVTLVGVLNACAHGGLVDEG 372
>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/181 (40%), Positives = 108/181 (59%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV + TA+V Y + A Q FD+MPER+ V W A+I GY +F +A+ F+ M
Sbjct: 123 DVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGML 182
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA--- 121
E T+V +L+A ++L A + G+WI +I N+++ ++F G ALIDMY C
Sbjct: 183 ADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVY 242
Query: 122 DVEKA-----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+VEK +K+ ++W +I G A++G GD AL FS+ML + KPDEV ++GVL AC
Sbjct: 243 EVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACC 302
Query: 177 H 177
H
Sbjct: 303 H 303
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 23/178 (12%)
Query: 8 SWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN 67
S I S+Y RG ++ ++QC +MI YL +N+ +L +F M +
Sbjct: 40 SIARIFSKY--RGSIN-SQQC------------NSMIRTYLDLNKHLNSLYIFALMHKFS 84
Query: 68 IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV---- 123
I+ D T ++L A A L +G+ I + + D++ AL+ +YC C +
Sbjct: 85 ILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDAS 144
Query: 124 ----EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
E +++ +W +I G + KA+D F ML +P E V VLSAC+H
Sbjct: 145 QLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSH 202
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 25/171 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+V TA++ Y G V + F+++ E++ W +I GY + AL F M
Sbjct: 224 NVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRML 283
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
N DE T + +L A + + G W + + F I+ Y D+
Sbjct: 284 MENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQ------FGLQPRIEHYGCMVDL- 336
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
L +G ++AL++ M SI+PD + + +L AC
Sbjct: 337 ---------------LGRAGLLEEALELIQSM---SIEPDPIIWRALLCAC 369
>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 105/186 (56%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV SWT ++ Y G D AR F+ MP ++ W +I Y + + +EAL +F
Sbjct: 288 MPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIF 347
Query: 61 QEMQTSNIM-GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
E+Q S I DE T+VS L+A A L A+DLG WI YI + + + ++L+DMY
Sbjct: 348 NELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAK 407
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C +EKA ++D + W+ MI GL + G G A+D+F +M A +KP+ V + V
Sbjct: 408 CGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNV 467
Query: 172 LSACTH 177
L AC+H
Sbjct: 468 LCACSH 473
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 102/213 (47%), Gaps = 40/213 (18%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ ++V Y G + +A + F + +D V W +MI + + N +AL LF +M+
Sbjct: 160 DLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKME 219
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
N+M + T+V +L+A A L+ G W+ +YI++ +K D+ NA++DMY C V+
Sbjct: 220 RENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVD 279
Query: 125 KAQK--------DKFSWTTMIVGLAISGNGD----------------------------- 147
AQK D FSWT M+ G A G+ D
Sbjct: 280 DAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGK 339
Query: 148 --KALDMFSQMLRASI-KPDEVAYVGVLSACTH 177
+AL +F+++ + I KPDEV V LSAC
Sbjct: 340 PKEALAIFNELQLSKIAKPDEVTLVSTLSACAQ 372
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 9/164 (5%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-QTSNIMGDEFTIVSILT 80
+D AR FDQ+P+ + W +I Y + ++ +F ++ + ++FT ++
Sbjct: 75 LDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIK 134
Query: 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFS 132
A + L+A +G + K D++ N+L+ Y C D+ A+ KD S
Sbjct: 135 AASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVS 194
Query: 133 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
W +MI A + AL++F +M R ++ P+ V VGVLSAC
Sbjct: 195 WNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACA 238
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+++V Y G ++ A + F + ERD +W+AMI G R + A+ LF EMQ + +
Sbjct: 399 SSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVK 458
Query: 70 GDEFTIVSILTARANLRALDLG 91
+ T ++L A ++ +D G
Sbjct: 459 PNSVTFTNVLCACSHAGLVDEG 480
>gi|15241180|ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g56310
gi|10177829|dbj|BAB11258.1| unnamed protein product [Arabidopsis thaliana]
gi|332009364|gb|AED96747.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 530
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 116/184 (63%), Gaps = 10/184 (5%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMP--ERDYVLWTAMIDGYLRVNRFREALTLFQ 61
KDV W A+++ Y G++D AR + MP R+ V WT +I GY + R EA+ +FQ
Sbjct: 180 KDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQ 239
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
M N+ DE T++++L+A A+L +L+LGE I +Y+D + + NA+IDMY
Sbjct: 240 RMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSG 299
Query: 122 DVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
++ KA +++ +WTT+I GLA G+G +AL MF++M++A ++P++V ++ +LS
Sbjct: 300 NITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILS 359
Query: 174 ACTH 177
AC+H
Sbjct: 360 ACSH 363
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N+ V A++ Y G + A F+ + ER+ V WT +I G EAL +F
Sbjct: 282 NRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNR 341
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGE 92
M + + ++ T ++IL+A +++ +DLG+
Sbjct: 342 MVKAGVRPNDVTFIAILSACSHVGWVDLGK 371
>gi|357519199|ref|XP_003629888.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355523910|gb|AET04364.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 515
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 117/188 (62%), Gaps = 13/188 (6%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N++V+ WT++VS Y + G V+ AR FD+MP R+ ++AM+ GY+R F E + LF+E
Sbjct: 148 NRNVVCWTSLVSGYCSCGLVNEARDVFDKMPLRNEASYSAMVSGYVRNGFFSEGVQLFRE 207
Query: 63 MQTSN-----IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
++ + + + +VS+L A + A + G+WI +Y+++N ++ D+ G ALID Y
Sbjct: 208 LKKKDKGCACLKFNGALLVSVLNACTMVGAFEEGKWIHSYVEENGLEYDLELGTALIDFY 267
Query: 118 CICADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
C V+ A+K D +W+ MI+GLAI+GN AL++F +M + KP+EV +V
Sbjct: 268 MKCGWVKGAEKVFNKMPVKDVATWSAMILGLAINGNNKMALELFEKMEKVGPKPNEVTFV 327
Query: 170 GVLSACTH 177
GVL+AC H
Sbjct: 328 GVLTACNH 335
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 78/169 (46%), Gaps = 17/169 (10%)
Query: 19 RGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSI 78
RG A F +P + + ++I Y ++F + +F +M +NI + T ++
Sbjct: 35 RGDFRYAETLFTHIPNPNIFDYNSIITSYTTNSQFHKLFFVFTKMLNTNIRPNSHTFTTL 94
Query: 79 LTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDK 130
+ A +L +L E + T K +D++ +++I+ + + + E + ++
Sbjct: 95 VKACVSLSSL---EQVFTLSMKLGNSSDVYFVSSVINAFSKHSAIHLARQVFDECSNRNV 151
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGVLSACTHN 178
WT+++ G G ++A D+F +M LR +E +Y ++S N
Sbjct: 152 VCWTSLVSGYCSCGLVNEARDVFDKMPLR-----NEASYSAMVSGYVRN 195
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 111/187 (59%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SWT ++ Y G ++ A FD +P +D V WTAM+ GY + R +EAL F
Sbjct: 204 MSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYF 263
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV--KNDIFAGNALIDMYC 118
Q+MQ + DE T+ +++A A L A+ WI+ +++ ++ G+ALIDMY
Sbjct: 264 QKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYS 323
Query: 119 ICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C ++A +++ FS+++MI+G A+ G AL +F ML+ I+P++V ++G
Sbjct: 324 KCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIG 383
Query: 171 VLSACTH 177
+LSAC+H
Sbjct: 384 ILSACSH 390
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 76/188 (40%), Gaps = 40/188 (21%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88
F Q+ + LWTAMI GY E+ + M+ + FT ++ A +
Sbjct: 99 FGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNM 158
Query: 89 DLGEWIKTY-IDKNKVKNDIFAGNALIDMYCIC--------------------------- 120
DLG+ + I +D++ GN++ID+Y C
Sbjct: 159 DLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVA 218
Query: 121 ----ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
D+E A KD +WT M+ G A +G +AL+ F +M ++ DEV
Sbjct: 219 YAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTL 278
Query: 169 VGVLSACT 176
GV+SAC
Sbjct: 279 AGVISACA 286
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 75/171 (43%), Gaps = 25/171 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+V+ +A++ Y G D A + F+ M ER+ +++MI GY R AL LF +M
Sbjct: 311 NVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDML 370
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ I ++ T + IL+A ++ ++ G + ++K F D Y D+
Sbjct: 371 KTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEK------FFGVAPSPDHYACMVDL- 423
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
L +G ++ALD+ M ++P+ + +L AC
Sbjct: 424 ---------------LGRAGCLEEALDLVKTM---PMEPNGGVWGALLGAC 456
>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
Length = 635
Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats.
Identities = 72/187 (38%), Positives = 109/187 (58%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V+ TA+++ Y G +D AR+ FD MP +D++ W AMIDGY + R EAL LF
Sbjct: 191 MPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLF 250
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYI-DKNKVKNDIFAGNALIDMYCI 119
+ M S + DE I+ L+A A L + G W+ +Y+ + +V+ + G ALIDMYC
Sbjct: 251 RWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCK 310
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C +E A KD W MI G A+ G+ KAL+MFSQ+ + P ++ ++G+
Sbjct: 311 CGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGL 370
Query: 172 LSACTHN 178
L+AC+H+
Sbjct: 371 LNACSHS 377
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/166 (24%), Positives = 78/166 (46%), Gaps = 25/166 (15%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ Y G ++ A F+ + ++D V+W AMI+GY R+AL +F ++++ +
Sbjct: 302 TALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLW 361
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
+ T + +L A ++ +D G + F ++ + Y I +E
Sbjct: 362 PTDITFIGLLNACSHSGLVDEG-------------HQFF--QSMEEEYAIVPKIEH---- 402
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ L +G ++A + M +I PD V +V +L+AC
Sbjct: 403 ---YGCMVDLLGRAGLIEEAFHLVQSM---TIAPDTVMWVSLLAAC 442
>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
Length = 634
Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats.
Identities = 72/187 (38%), Positives = 109/187 (58%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V+ TA+++ Y G +D AR+ FD MP +D++ W AMIDGY + R EAL LF
Sbjct: 190 MPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLF 249
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYI-DKNKVKNDIFAGNALIDMYCI 119
+ M S + DE I+ L+A A L + G W+ +Y+ + +V+ + G ALIDMYC
Sbjct: 250 RWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCK 309
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C +E A KD W MI G A+ G+ KAL+MFSQ+ + P ++ ++G+
Sbjct: 310 CGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGL 369
Query: 172 LSACTHN 178
L+AC+H+
Sbjct: 370 LNACSHS 376
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/166 (24%), Positives = 78/166 (46%), Gaps = 25/166 (15%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ Y G ++ A F+ + ++D V+W AMI+GY R+AL +F ++++ +
Sbjct: 301 TALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLW 360
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
+ T + +L A ++ +D G + F ++ + Y I +E
Sbjct: 361 PTDITFIGLLNACSHSGLVDEG-------------HQFF--QSMEEEYAIVPKIEH---- 401
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ L +G ++A + M +I PD V +V +L+AC
Sbjct: 402 ---YGCMVDLLGRAGLIEEAFHLVQSM---TIAPDTVMWVSLLAAC 441
>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 741
Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats.
Identities = 71/178 (39%), Positives = 106/178 (59%), Gaps = 10/178 (5%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G+++ A F+++P +D + W +I GY +N ++EAL LFQEM S
Sbjct: 306 ALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETP 365
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDK--NKVKNDIFAGNALIDMYCICADVEKA-- 126
++ T++SIL A A+L A+D+G WI YIDK V N +LIDMY C D+E A
Sbjct: 366 NDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQ 425
Query: 127 ------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
K SW MI G A+ G D + D+FS+M + I+PD++ +VG+LSAC+H+
Sbjct: 426 VFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHS 483
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 65/183 (35%), Positives = 111/183 (60%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++DV+S+TA++ Y +RG ++ A++ FD++P +D V W AMI GY ++EAL LF++
Sbjct: 197 HRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKD 256
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M +N+ DE T+V++++A A +++LG + +ID + +++ NALID+Y C +
Sbjct: 257 MMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGE 316
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+E A KD SW T+I G +AL +F +MLR+ P++V + +L A
Sbjct: 317 LETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPA 376
Query: 175 CTH 177
C H
Sbjct: 377 CAH 379
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/193 (23%), Positives = 79/193 (40%), Gaps = 39/193 (20%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A F + E + ++W M G+ + AL L+ M + ++ + +T +L + A
Sbjct: 87 AISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAK 146
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK---------------- 128
+A G+ I ++ K D++ +LI MY +E A K
Sbjct: 147 SKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTAL 206
Query: 129 -----------------------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165
D SW MI G A +GN +AL++F M++ +++PDE
Sbjct: 207 IKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDE 266
Query: 166 VAYVGVLSACTHN 178
V V+SAC +
Sbjct: 267 STMVTVVSACAQS 279
>gi|413925246|gb|AFW65178.1| hypothetical protein ZEAMMB73_703358 [Zea mays]
Length = 572
Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats.
Identities = 76/185 (41%), Positives = 108/185 (58%), Gaps = 10/185 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++SW A+V Y G VD AR+ FD MPE+D V WT M+ GY R R +AL LF
Sbjct: 250 MPARNLVSWNAMVRGYAVNGDVDGARELFDAMPEKDVVSWTCMVSGYARAGRHAQALELF 309
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK-NKVKNDIF-AGNALIDMYC 118
+ MQ+ ++ +E T+VS+ +A A L AL G W +I K V +D F G ALIDMY
Sbjct: 310 RTMQSGDVRPNEVTMVSVFSACARLAALKEGRWAHAFIGKRGMVLDDGFNLGAALIDMYA 369
Query: 119 ICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C + A +K+ +W +I GLA +G+ + +D+F QM + KPD V +V
Sbjct: 370 KCGRPDVAAKVFRSLDRKNVSAWNALIAGLAANGDARRCIDVFEQMKVSDEKPDSVTFVS 429
Query: 171 VLSAC 175
VL+AC
Sbjct: 430 VLAAC 434
Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 14/179 (7%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+SW +V+ Y G++ AR+ FD MP R+ W+AM+ Y + A +F
Sbjct: 159 DVVSWNTVVAGYARCGELGNARRAFDGMPRRNGASWSAMVGAYAAAGQLDVARDMFDRAP 218
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ ++V+ + A L L + D+ +N + + NA++ Y + DV+
Sbjct: 219 AAG-----RSVVTWNSMVAGLARHGLLPLARKMFDEMPARN-LVSWNAMVRGYAVNGDVD 272
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
A +KD SWT M+ G A +G +AL++F M ++P+EV V V SAC
Sbjct: 273 GARELFDAMPEKDVVSWTCMVSGYARAGRHAQALELFRTMQSGDVRPNEVTMVSVFSAC 331
Score = 43.5 bits (101), Expect = 0.036, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G+ D+A + F + ++ W A+I G R + +F++M+ S+
Sbjct: 363 ALIDMYAKCGRPDVAAKVFRSLDRKNVSAWNALIAGLAANGDARRCIDVFEQMKVSDEKP 422
Query: 71 DEFTIVSILTARANLRALDLG 91
D T VS+L A A +D G
Sbjct: 423 DSVTFVSVLAACARAGLVDEG 443
>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 736
Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats.
Identities = 68/180 (37%), Positives = 112/180 (62%), Gaps = 8/180 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+D +S+TA+++ Y++ G VD AR+ FD++P +D V W AMI GY++ RF EAL F M
Sbjct: 191 RDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRM 250
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
Q +++ ++ T+VS+L+A +LR+L+LG+WI +++ ++ NAL+DMY C ++
Sbjct: 251 QEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEI 310
Query: 124 EKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
A+ KD W TMI G ++AL +F MLR ++ P++V ++ VL AC
Sbjct: 311 GTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPAC 370
Score = 138 bits (348), Expect = 9e-31, Method: Composition-based stats.
Identities = 69/179 (38%), Positives = 107/179 (59%), Gaps = 12/179 (6%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+V Y G++ AR+ FD M ++D +LW MI GY ++ + EAL LF+ M N+
Sbjct: 299 ALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTP 358
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVK----NDIFAGNALIDMYCICADVEKA 126
++ T +++L A A+L ALDLG+W+ YIDKN N++ ++I MY C VE A
Sbjct: 359 NDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVA 418
Query: 127 Q--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+ + SW MI GLA++G+ ++AL +F +M+ +PD++ +VGVLSACT
Sbjct: 419 EQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQ 477
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 72/171 (42%), Gaps = 25/171 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+V WT+I+ Y G V++A Q F M R W AMI G AL LF+EM
Sbjct: 398 NVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMI 457
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
D+ T V +L+A ++LG + ++K+ Y I ++
Sbjct: 458 NEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKD---------------YGISPKLQ 502
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ MI LA SG D+A + M ++PD + +L+AC
Sbjct: 503 H-------YGCMIDLLARSGKFDEAKVLMGNM---EMEPDGAIWGSLLNAC 543
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 99 DKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKAL 150
DK+ ++ D + ALI Y V+ A+ KD SW MI G SG ++AL
Sbjct: 186 DKSTLR-DAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEAL 244
Query: 151 DMFSQMLRASIKPDEVAYVGVLSACTH 177
F++M A + P++ V VLSAC H
Sbjct: 245 ACFTRMQEADVSPNQSTMVSVLSACGH 271
>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 519
Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 115/186 (61%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D++SW +++ Y+ +G+++ AR FD+ P +D V W AMI GY+ ++AL LF
Sbjct: 200 MPERDLVSWNVMITGYVKQGEMESARMLFDEAPVKDVVSWNAMIAGYVVCGLSKQALELF 259
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYI-DKNKVKNDIFAGNALIDMYCI 119
EM + + DE T++S+L+A A+L L+ G+ + + + + K GNALIDMY
Sbjct: 260 NEMCRAGVFPDEVTLLSLLSACADLGDLENGKKVHAKVMEISMGKLSTLLGNALIDMYAK 319
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C +++++ KD SW ++IVG+A+ G+G ++L +F M R I P+E+ +VGV
Sbjct: 320 CGNIKESLDVFWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQRTKICPNEITFVGV 379
Query: 172 LSACTH 177
L AC+H
Sbjct: 380 LVACSH 385
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 69/159 (43%), Gaps = 37/159 (23%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G +++A FD + D V W+++I GY R + A LF EM
Sbjct: 157 GDLNVATSLFDDSCKGDVVAWSSLIAGYARRGDLKVARKLFNEMPER------------- 203
Query: 80 TARANLRALDLGEW---IKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTM 136
DL W I Y+ + +++ + L D E KD SW M
Sbjct: 204 ---------DLVSWNVMITGYVKQGEME----SARMLFD--------EAPVKDVVSWNAM 242
Query: 137 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
I G + G +AL++F++M RA + PDEV + +LSAC
Sbjct: 243 IAGYVVCGLSKQALELFNEMCRAGVFPDEVTLLSLLSAC 281
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 67/145 (46%), Gaps = 10/145 (6%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G + + F + ++D + W ++I G +E+L+LF+ MQ + I
Sbjct: 312 ALIDMYAKCGNIKESLDVFWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQRTKICP 371
Query: 71 DEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK- 128
+E T V +L A ++ +D G ++ + K++ +I ++DM +++A K
Sbjct: 372 NEITFVGVLVACSHAGEIDEGYKYFDLMSSEYKIEPNIRHCGCMVDMLGRAGLLKEAAKF 431
Query: 129 --------DKFSWTTMIVGLAISGN 145
+ W T++ + G+
Sbjct: 432 IDSMKIEPNAIIWRTLLAACKVHGD 456
>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
Length = 842
Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 116/186 (62%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NK V++W +IV+ Y+ G+VD A + F+ MPE++ V W +I G ++ + F EA+ +F
Sbjct: 398 MSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVF 457
Query: 61 QEMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
MQ+ + D T++SI +A +L ALDL +WI YI+KN ++ D+ G L+DM+
Sbjct: 458 CSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSR 517
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C D E A +D +WT I +A++GN ++A+++F M+ +KPD VA+VG
Sbjct: 518 CGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGA 577
Query: 172 LSACTH 177
L+AC+H
Sbjct: 578 LTACSH 583
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 103/183 (56%), Gaps = 9/183 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD+ ++V Y G++D AR+ FD+M ER+ V WT+MI GY R + ++A+ LF M
Sbjct: 167 KDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRM 226
Query: 64 -QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY--CIC 120
+ + + T+V +++A A L L+ GE + +I + ++ + +AL+DMY C
Sbjct: 227 VRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNA 286
Query: 121 ADVEKAQKDKFSWTTMIVGLAISGN------GDKALDMFSQMLRASIKPDEVAYVGVLSA 174
DV K D++ + + + A++ N +AL +F+ M+ + ++PD ++ + +S+
Sbjct: 287 IDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISS 346
Query: 175 CTH 177
C+
Sbjct: 347 CSQ 349
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 88/186 (47%), Gaps = 13/186 (6%)
Query: 3 NKDVISWTAIVSRYINRG---QVDIARQCFDQMPERDYV-LWTAMIDGYLRVNRFREALT 58
+ DV + T +V+R G + A++ F+ ++ ++I GY EA+
Sbjct: 61 DNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAIL 120
Query: 59 LFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC 118
LF M S I D++T L+A A RA G I I K D+F N+L+ Y
Sbjct: 121 LFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYA 180
Query: 119 ICADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYV 169
C +++ A+K + SWT+MI G A A+D+F +M+R + P+ V V
Sbjct: 181 ECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMV 240
Query: 170 GVLSAC 175
V+SAC
Sbjct: 241 CVISAC 246
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 8/160 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+A+V Y+ +D+A++ FD+ + L AM Y+R REAL +F M S +
Sbjct: 275 SALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVR 334
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
D +++S +++ + LR + G+ Y+ +N ++ NALIDMY C + A
Sbjct: 335 PDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRI 394
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI 161
K +W +++ G +G D A + F M +I
Sbjct: 395 FDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNI 434
>gi|354805142|gb|AER41563.1| CRR4 [Oryza australiensis]
Length = 599
Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 110/187 (58%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+SWTA+VS Y G +D A+Q FD MP ++ V W AMI GY +R+ EAL F
Sbjct: 266 MDQKDVVSWTAMVSAYAKIGDLDNAKQLFDHMPVKNLVSWNAMITGYNHNSRYDEALRTF 325
Query: 61 QEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
Q M DE T+VS+++A A L +++ WI ++I K+K+ + GNALIDM+
Sbjct: 326 QLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWIGSFIGKSKIHLTVALGNALIDMFAK 385
Query: 120 CADVEKAQKDKF--------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C DV +AQ + +WTTMI G A +G +AL +++ M R I+ D+ ++
Sbjct: 386 CGDVGRAQSFFYEMKTRCIITWTTMISGFAFNGFCREALLVYNNMCREGIELDDTVFIAA 445
Query: 172 LSACTHN 178
L+AC H
Sbjct: 446 LAACAHG 452
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 84/186 (45%), Gaps = 17/186 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+SW +IV Y++ G A F+ MPER+ V W ++ G+ R A T+F
Sbjct: 173 MVEKDVVSWNSIVGVYMSSGDATGAMGLFEAMPERNVVSWNTVVAGFARAGDMVTARTVF 232
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M + N + I T+ D+ E + D+ K D+ + A++ Y
Sbjct: 233 DRMPSRNAVSWNLMISGYATSG------DV-EAAHSVFDRMDQK-DVVSWTAMVSAYAKI 284
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFS-QMLRASIKPDEVAYVGV 171
D++ A+ K+ SW MI G + D+AL F ML +PDE V V
Sbjct: 285 GDLDNAKQLFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSV 344
Query: 172 LSACTH 177
+SAC
Sbjct: 345 VSACAQ 350
>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 620
Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 113/185 (61%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ D +SW +++ Y+ G++DIA F +M E++ + WT MI GY++ + +EAL LF
Sbjct: 176 IPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLF 235
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EMQ S++ D ++ + L+A A L AL+ G+WI +Y++K +++ D G LIDMY C
Sbjct: 236 HEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKC 295
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++E+A +K +WT +I G A G+G +A+ F +M + IKP+ + + VL
Sbjct: 296 GEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVL 355
Query: 173 SACTH 177
+AC++
Sbjct: 356 TACSY 360
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 80/190 (42%), Gaps = 39/190 (20%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A+ FD D LW MI G+ + +L L+Q M S+ + +T S+L A +N
Sbjct: 68 AQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSN 127
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------------------- 123
L A + I I K +ND++A N+LI+ Y + +
Sbjct: 128 LSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSV 187
Query: 124 ------------------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165
+ A+K+ SWTTMI G + +AL +F +M + ++PD
Sbjct: 188 IKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDN 247
Query: 166 VAYVGVLSAC 175
V+ LSAC
Sbjct: 248 VSLANALSAC 257
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 27/172 (15%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + ++ Y G+++ A + F + ++ WTA+I GY REA++ F EMQ
Sbjct: 281 DSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQ 340
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN-KVKNDIFAGNALIDMYCICADV 123
I + T ++LTA + ++ G+ I ++++ +K I ++D+
Sbjct: 341 KMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDL------- 393
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
L +G D+A +M +KP+ V + +L AC
Sbjct: 394 ----------------LGRAGLLDEAKRFIQEM---PLKPNAVIWGALLKAC 426
>gi|356529920|ref|XP_003533534.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g15300-like [Glycine max]
Length = 555
Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 111/186 (59%), Gaps = 11/186 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D++SW +++ Y G+++ AR+ FD+ P +D V W AM+ GY+ N +EAL LF
Sbjct: 199 MPKRDLVSWNVMITAYTKHGEMECARRLFDEAPMKDVVSWNAMVGGYVLHNLNQEALELF 258
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYI-DKNKVKNDIFAGNALIDMYCI 119
EM DE T++S+L+A A+L D GE + I + NK K GNAL+DMY
Sbjct: 259 DEMCEVGECPDEVTMLSLLSACADLG--DXGEKVHAKIMELNKGKLSTLLGNALVDMYAK 316
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C ++ K KD SW ++I GLA G+ +++L +F +M R + PDE+ +VGV
Sbjct: 317 CGNIGKGVCVFWLIRDKDMVSWNSVIGGLAFHGHAEESLGLFREMQRTKVCPDEITFVGV 376
Query: 172 LSACTH 177
L+AC+H
Sbjct: 377 LAACSH 382
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 64/142 (45%), Gaps = 8/142 (5%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A Q F Q+P+ D +W I G + + A+ L+ +M ++ D FT +L A
Sbjct: 60 AVQMFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMTHRSVKPDNFTFPLVLKACTK 119
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTM 136
L ++ G + + + +++ N L+ + C D++ A + D +W+ +
Sbjct: 120 LFWVNTGSVVHGRVFRLGFGSNVVVRNTLLVFHAKCGDLKVANDIFDDSDKGDVVAWSAL 179
Query: 137 IVGLAISGNGDKALDMFSQMLR 158
I G A G+ A +F +M +
Sbjct: 180 IAGYAQRGDLSVARKLFDEMPK 201
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 72/161 (44%), Gaps = 10/161 (6%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+V Y G + F + ++D V W ++I G E+L LF+EMQ + +
Sbjct: 309 ALVDMYAKCGNIGKGVCVFWLIRDKDMVSWNSVIGGLAFHGHAEESLGLFREMQRTKVCP 368
Query: 71 DEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
DE T V +L A ++ +D G + +K K++ +I ++DM +++A
Sbjct: 369 DEITFVGVLAACSHTGNVDEGNRYFYLMKNKYKIEPNIRHCGCVVDMLARAGLLKEAFDF 428
Query: 127 ------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI 161
+ + W +++ + G+ + A Q+LR +
Sbjct: 429 IASMKIEPNAIVWRSLLGACKVHGDVELAKRATEQLLRMRV 469
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%)
Query: 109 AGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
A + Y + + Q D F W T I G + S + A+ +++QM S+KPD +
Sbjct: 51 AATTAVTQYAVQMFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMTHRSVKPDNFTF 110
Query: 169 VGVLSACT 176
VL ACT
Sbjct: 111 PLVLKACT 118
>gi|224059226|ref|XP_002299777.1| predicted protein [Populus trichocarpa]
gi|222847035|gb|EEE84582.1| predicted protein [Populus trichocarpa]
Length = 439
Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 114/185 (61%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+K K+ SW ++ ++ G++ A + FD+MPER + WT +I+G++++ F EAL F
Sbjct: 74 LKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGVISWTVLINGFVKMGLFEEALEWF 133
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++MQ S + D TIV++L+A ANL AL LG W+ Y K +++++ N+LID+Y C
Sbjct: 134 RKMQVSKVEPDRVTIVTVLSACANLGALGLGLWVHRYALKKGLRDNVKICNSLIDLYSRC 193
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E A ++ SW ++I GLA +G ++AL+ F M + KP++V++ G L
Sbjct: 194 GAIELARQVFEKMGERTLVSWNSIIGGLAANGFTEEALEHFDLMQKQGFKPNDVSFTGAL 253
Query: 173 SACTH 177
+AC+H
Sbjct: 254 TACSH 258
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 42/157 (26%)
Query: 63 MQTSNIMGDEFTIVSILTARANL--RALDLGEWIKTYIDKNKVKN-DIFAGNALIDMYCI 119
M+ I + T +++L+ A+L + LG + Y K + ++ G AL+DMY
Sbjct: 1 MRLLEIDPNHVTFITLLSGCADLPSQGNSLGPLLHAYTRKLGLDTCNLMVGTALVDMYAK 60
Query: 120 CADVEKAQ--------KDKFSWTTMIVGLAISG------------------------NG- 146
C VE ++ K+ FSW TMI G +G NG
Sbjct: 61 CGHVELSRLCFDELKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGVISWTVLINGF 120
Query: 147 ------DKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
++AL+ F +M + ++PD V V VLSAC +
Sbjct: 121 VKMGLFEEALEWFRKMQVSKVEPDRVTIVTVLSACAN 157
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 29/167 (17%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRF-REALTLFQEMQTSNIM 69
+++ Y G +++ARQ F++M ER V W ++I G L N F EAL F MQ
Sbjct: 185 SLIDLYSRCGAIELARQVFEKMGERTLVSWNSIIGG-LAANGFTEEALEHFDLMQKQGFK 243
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
++ + LTA ++ +D G ++ +K+ I ++D+Y +E
Sbjct: 244 PNDVSFTGALTACSHTGLVDEGLKYFDIMERVHKISPRIEHYGCIVDLYSRAGRLE---- 299
Query: 129 DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
D S + +KP+EV +L+AC
Sbjct: 300 ----------------------DAMSVVQNMPMKPNEVVVGSLLAAC 324
>gi|356570285|ref|XP_003553320.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26630,
chloroplastic-like [Glycine max]
Length = 474
Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 113/182 (62%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
++V +WT +++ ++ G++D AR+ F+QMP ++ V WTA+IDGY++ + EA LF+ M
Sbjct: 186 RNVFAWTTVIAGFVACGKLDTARELFEQMPSKNVVSWTAIIDGYVKHKQPIEAFDLFERM 245
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
Q N+ +E+T+VS++ A + +L LG + + KN + + F G ALIDMY C ++
Sbjct: 246 QADNVRPNEYTLVSLVRACTEMGSLKLGRRVHDFALKNGFELEPFLGTALIDMYSKCGNL 305
Query: 124 EKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ A+ + +W TMI L + G D+AL +F +M +A+ PD + +VGVLSAC
Sbjct: 306 DDARTVFDMMQMRTLATWNTMITSLGVHGYRDEALSIFEEMEKANEVPDAITFVGVLSAC 365
Query: 176 TH 177
+
Sbjct: 366 VY 367
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 8/145 (5%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G++ A FDQ+ D W MI Y + A LF+ M D+FT ++
Sbjct: 70 GKMKYATLVFDQLNAPDVFTWNVMIRAYTIGGSPKMAFLLFKAMLYQGFAPDKFTYPCVI 129
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKF 131
A ALD+G K D++ N ++++Y C +V+ ++ F
Sbjct: 130 NACMAYNALDVGRVAHALAIKMGFWGDLYVQNTMMNLYFKCENVDDGWNVFDKMCVRNVF 189
Query: 132 SWTTMIVGLAISGNGDKALDMFSQM 156
+WTT+I G G D A ++F QM
Sbjct: 190 AWTTVIAGFVACGKLDTARELFEQM 214
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFR-EALTLFQEMQTSNI 68
TA++ Y G +D AR FD M R W MI L V+ +R EAL++F+EM+ +N
Sbjct: 293 TALIDMYSKCGNLDDARTVFDMMQMRTLATWNTMITS-LGVHGYRDEALSIFEEMEKANE 351
Query: 69 MGDEFTIVSILTARANLRALDLGE 92
+ D T V +L+A + L+L +
Sbjct: 352 VPDAITFVGVLSACVYMNDLELAQ 375
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 128 KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
D F+W MI I G+ A +F ML PD+ Y V++AC
Sbjct: 85 PDVFTWNVMIRAYTIGGSPKMAFLLFKAMLYQGFAPDKFTYPCVINAC 132
>gi|357153087|ref|XP_003576334.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Brachypodium distachyon]
Length = 531
Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 107/186 (57%), Gaps = 11/186 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V W A ++R+ G ++ A + F +MP RD V W ++I GY ++ R+ +AL +F
Sbjct: 217 MPERSVSWWNAEITRHARVGDMEAAARVFREMPGRDAVSWNSLIGGYTKLGRYVQALEVF 276
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ S + E T+VS+L A A + L+LG+ + YI V D + GNAL+DMY C
Sbjct: 277 REMQDSGVEPTELTLVSVLGACAEIGELELGKGVHGYIGSKGVVADGYVGNALVDMYAKC 336
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E A+ +D W MIVG ++ G KAL++F M ++PD V ++GVL
Sbjct: 337 GSLELARQLFESMSTRDITCWNAMIVGFSVHGYSRKALELFDAM---RVEPDHVTFLGVL 393
Query: 173 SACTHN 178
AC+H
Sbjct: 394 IACSHG 399
>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
Length = 513
Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 109/175 (62%), Gaps = 8/175 (4%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y+ G + A+Q FD++ E+D V WT++I G ++ N +EAL LFQ+MQ+S I
Sbjct: 172 ALMDMYVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEP 231
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA---- 126
D + S+L+A A L ALD G W+ +ID+ +K DI G A++DMY C +E +
Sbjct: 232 DGIILTSVLSACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIF 291
Query: 127 ----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
K+ +W ++ GLA+ G+ K L++F +M+R ++P+EV ++ +L+AC H
Sbjct: 292 NGMPHKNVLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCH 346
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 81/160 (50%), Gaps = 11/160 (6%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A + FD+M RD V WT +I GY+R F EA+ LF M ++ + T VS+L A
Sbjct: 88 ASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVGLFLRM---DVEPNAATFVSVLVACGR 144
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKFSWTTM 136
L +G+ I K+ + NAL+DMY C + E A+KD SWT++
Sbjct: 145 KGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMYVKCGCLPGAKQVFDELAEKDIVSWTSI 204
Query: 137 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
I GL +AL++F M + I+PD + VLSAC
Sbjct: 205 ISGLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLSACA 244
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 11/144 (7%)
Query: 40 WTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYID 99
+ A++ GY +R + A +++ + + D FT ++L + A + G + I
Sbjct: 2 FNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVII 61
Query: 100 KNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALD 151
K +I+ N+L+ Y +C A +D SWT +I G +G D+A+
Sbjct: 62 KMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVG 121
Query: 152 MFSQMLRASIKPDEVAYVGVLSAC 175
+F LR ++P+ +V VL AC
Sbjct: 122 LF---LRMDVEPNAATFVSVLVAC 142
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ TA+V Y G ++++ Q F+ MP ++ + W A+++G + L LF+EM
Sbjct: 267 DIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNVLTWNALLNGLAMHGHAYKVLELFEEMV 326
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGE----WIK 95
+ +E T ++ILTA + ++ G W+K
Sbjct: 327 RVGMRPNEVTFLAILTACCHCGLVNEGRQYFNWMK 361
>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
Length = 938
Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 116/186 (62%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NK V++W +IV+ Y+ G+VD A + F+ MPE++ V W +I G ++ + F EA+ +F
Sbjct: 398 MSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVF 457
Query: 61 QEMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
MQ+ + D T++SI +A +L ALDL +WI YI+KN ++ D+ G L+DM+
Sbjct: 458 CSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSR 517
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C D E A +D +WT I +A++GN ++A+++F M+ +KPD VA+VG
Sbjct: 518 CGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGA 577
Query: 172 LSACTH 177
L+AC+H
Sbjct: 578 LTACSH 583
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 103/183 (56%), Gaps = 9/183 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD+ ++V Y G++D AR+ FD+M ER+ V WT+MI GY R + ++A+ LF M
Sbjct: 167 KDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRM 226
Query: 64 -QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY--CIC 120
+ + + T+V +++A A L L+ GE + +I + ++ + +AL+DMY C
Sbjct: 227 VRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNA 286
Query: 121 ADVEKAQKDKFSWTTMIVGLAISGN------GDKALDMFSQMLRASIKPDEVAYVGVLSA 174
DV K D++ + + + A++ N +AL +F+ M+ + ++PD ++ + +S+
Sbjct: 287 IDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISS 346
Query: 175 CTH 177
C+
Sbjct: 347 CSQ 349
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 88/186 (47%), Gaps = 13/186 (6%)
Query: 3 NKDVISWTAIVSRYINRG---QVDIARQCFDQMPERDYV-LWTAMIDGYLRVNRFREALT 58
+ DV + T +V+R G + A++ F+ ++ ++I GY EA+
Sbjct: 61 DNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAIL 120
Query: 59 LFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC 118
LF M S I D++T L+A A RA G I I K D+F N+L+ Y
Sbjct: 121 LFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYA 180
Query: 119 ICADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYV 169
C +++ A+K + SWT+MI G A A+D+F +M+R + P+ V V
Sbjct: 181 ECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMV 240
Query: 170 GVLSAC 175
V+SAC
Sbjct: 241 CVISAC 246
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 8/160 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+A+V Y+ +D+A++ FD+ + L AM Y+R REAL +F M S +
Sbjct: 275 SALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVR 334
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
D +++S +++ + LR + G+ Y+ +N ++ NALIDMY C + A
Sbjct: 335 PDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRI 394
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI 161
K +W +++ G +G D A + F M +I
Sbjct: 395 FDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNI 434
>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Brachypodium distachyon]
Length = 892
Score = 142 bits (357), Expect = 8e-32, Method: Composition-based stats.
Identities = 71/187 (37%), Positives = 111/187 (59%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ + V+S TA+++ Y + G +D AR FD +P +D+V W AMIDGY + R EAL LF
Sbjct: 448 LPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLF 507
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYI-DKNKVKNDIFAGNALIDMYCI 119
+ M S + DE T+V +L+A A L ++ G+W+ +Y+ + +V+ + G ALIDMYC
Sbjct: 508 RRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCK 567
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C + A KD W MI G A+ G+ KAL+MF Q + P ++ ++G+
Sbjct: 568 CGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEMFVQSREQGLWPTDITFIGL 627
Query: 172 LSACTHN 178
L+AC+H+
Sbjct: 628 LNACSHS 634
>gi|255580945|ref|XP_002531291.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529124|gb|EEF31104.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 109/186 (58%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ KDV+SW I++ G +++AR FDQMP RD+V W ++I Y F L
Sbjct: 289 LTEKDVVSWNTIIAGCAKAGDLELARTLFDQMPCRDFVSWNSLIAEYANRGDFIIVRDLL 348
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M N++ + T+ S+++A A + ALD G W ++ + ++K D G+ALIDMYC C
Sbjct: 349 YDMVAENVVPNNTTMASLISAAAEIGALDQGRWAHGWVIRMQIKIDAVLGSALIDMYCKC 408
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ A +KD WTTMI G A G G KAL++F +M +A++ P+E+ +V VL
Sbjct: 409 GSINNAFLIFNEIIEKDVILWTTMITGFAFHGYGSKALELFYEM-QANVTPNEITFVSVL 467
Query: 173 SACTHN 178
+AC+H+
Sbjct: 468 AACSHS 473
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 81/156 (51%), Gaps = 10/156 (6%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y+ G +A + F QMP D V + MI G + EA+ L +M ++
Sbjct: 165 SLIKVYLENGLFCLAHKIFRQMPAPDVVSFNIMITGCAKQGCGLEAIQLLYDMMALDLKP 224
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNK--VKNDIFAGNALIDMYCICADVEKA-- 126
DEFT++ +L + L G+ + +I++ K +++ GNAL+DMY C +++ A
Sbjct: 225 DEFTMLGLLVSCGKLGEARFGKTVHAWIERRKSITSSNLILGNALLDMYVKCQELDLAHR 284
Query: 127 ------QKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
+KD SW T+I G A +G+ + A +F QM
Sbjct: 285 TFSALTEKDVVSWNTIIAGCAKAGDLELARTLFDQM 320
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 82/192 (42%), Gaps = 26/192 (13%)
Query: 1 MKNKDVISWTAIVSRYI------NRGQVDIARQCFDQ-MPERDYVLWTAMIDGYLRVNRF 53
M ++I T +SR I + +D+A F+ P + ++ MI
Sbjct: 54 MMRSNLIGQTFPMSRLIFFSAISHPENLDMALILFNHYTPYPNLYIYNTMISALSSAT-- 111
Query: 54 REALTLFQEMQTSNIMGDEFTIVSILTA--------RANLRALDLGEWIKTYIDKNKVKN 105
A L+ M ++ I D+ T++ +L + + A+ LG Y+ + +K
Sbjct: 112 --AQPLYNSMLSTGIGPDKHTLLYLLHSARHVSEVKQVQCHAIILGLSTYRYLQNSLIK- 168
Query: 106 DIFAGNALIDMYCICADV--EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKP 163
++ N L +C+ + + D S+ MI G A G G +A+ + M+ +KP
Sbjct: 169 -VYLENGL---FCLAHKIFRQMPAPDVVSFNIMITGCAKQGCGLEAIQLLYDMMALDLKP 224
Query: 164 DEVAYVGVLSAC 175
DE +G+L +C
Sbjct: 225 DEFTMLGLLVSC 236
>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats.
Identities = 69/185 (37%), Positives = 108/185 (58%), Gaps = 11/185 (5%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D +SWT+++S Y G +D A F MP+++ W AM+ Y++ NRF EA LF M+
Sbjct: 187 DSVSWTSLISGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMK 246
Query: 65 T-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+N + D+F ++L+A L ALD G+WI YI +N ++ D A++DMYC C +
Sbjct: 247 AENNNVLDKFVATTMLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCL 306
Query: 124 EKAQKDKF----------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
EKA + SW MI GLA+ GNG+ A+ +F +M R + PD++ ++ +L+
Sbjct: 307 EKALQVFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLLT 366
Query: 174 ACTHN 178
AC H+
Sbjct: 367 ACAHS 371
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 13/142 (9%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRF--REALTLFQEMQTSNIMGDEFTIVSILTAR 82
A + FD +P+ D L+ +I G+L L L+ M ++++ + FT S+L A
Sbjct: 76 ALKLFDSIPQPDAFLYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIA- 134
Query: 83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSWT 134
R + G I ++ K N+LI MY +E+A++ D SWT
Sbjct: 135 --CRKIQHGMQIHAHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWT 192
Query: 135 TMIVGLAISGNGDKALDMFSQM 156
++I G + G D+A +F M
Sbjct: 193 SLISGYSKWGLIDEAFTIFQLM 214
>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 553
Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 113/190 (59%), Gaps = 15/190 (7%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+++++SW ++++ Y+ G VD AR+ FD+MPER+ V WT MI G ++ R ++AL LF E
Sbjct: 182 DRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHE 241
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKND----IFAGNALIDMYC 118
M+ + + D+ +V+ L+A A L L LG WI +YID+ + + N+LI MY
Sbjct: 242 MRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYA 301
Query: 119 ICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI---KPDEVA 167
C ++KA Q+ SWT+MI G A G+ ++AL +F M R +PD +
Sbjct: 302 SCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGIT 361
Query: 168 YVGVLSACTH 177
++GVL AC+H
Sbjct: 362 FIGVLCACSH 371
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 87/207 (42%), Gaps = 42/207 (20%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
++S YI G + A + F+++ +W MI G+ + + + L+ M + +
Sbjct: 56 LLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPN 115
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI------------ 119
EFT ++ A R L GE + + N ++F +L+++Y I
Sbjct: 116 EFTYSFLIGGCARSRLLREGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARR 175
Query: 120 ----------------------CADVEKA--------QKDKFSWTTMIVGLAISGNGDKA 149
C DV+ A +++ SWTTMI G A G +A
Sbjct: 176 VFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQA 235
Query: 150 LDMFSQMLRASIKPDEVAYVGVLSACT 176
L +F +M RA +K D+VA V LSAC
Sbjct: 236 LHLFHEMRRAGVKLDQVALVAALSACA 262
>gi|357466867|ref|XP_003603718.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355492766|gb|AES73969.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 629
Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 117/188 (62%), Gaps = 13/188 (6%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N++V+ WT++VS Y + G V+ R FD+MP+R+ +AM+ GY+R + F E + LF+E
Sbjct: 184 NRNVVCWTSLVSGYCSCGLVNEVRDVFDKMPQRNEASNSAMVSGYVRNSFFSEGVQLFRE 243
Query: 63 MQT-----SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
++ + + + +VS+L A + A + G+WI +Y+++N ++ D+ G ALID Y
Sbjct: 244 LKKKDKGRARVKFNGALLVSVLNACTVMGAFEEGKWIHSYVEENGLEYDLELGTALIDFY 303
Query: 118 CICADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
C V+ A+K D +W+ MI+GLAI+GN AL++F +M + KP+EV +V
Sbjct: 304 AKCGWVKDAEKVFDKMLVKDVATWSAMILGLAINGNNKMALELFEKMEKVGPKPNEVTFV 363
Query: 170 GVLSACTH 177
GVL+AC H
Sbjct: 364 GVLTACNH 371
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/146 (20%), Positives = 69/146 (47%), Gaps = 11/146 (7%)
Query: 19 RGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSI 78
RG A F MP + + ++I Y ++F ++L++F +M NI + T ++
Sbjct: 71 RGDFRYAETLFTHMPNPNIFDYNSIITSYTTNSQFDKSLSVFTKMLNMNIRPNSHTFTTL 130
Query: 79 LTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDK 130
+ + L +L E + T K+ +D++ +++I+++ + E + ++
Sbjct: 131 VKSCVTLSSL---EQVFTLTMKSGNSSDVYFVSSVINVFSKHGAIHLARQVFDESSNRNV 187
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQM 156
WT+++ G G ++ D+F +M
Sbjct: 188 VCWTSLVSGYCSCGLVNEVRDVFDKM 213
>gi|347954504|gb|AEP33752.1| chloroplast biogenesis 19, partial [Lobularia maritima]
Length = 496
Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 109/185 (58%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ K+ ++W ++ Y+ +G++D A + FD+MPER + WTAMI+G+++ EAL F
Sbjct: 131 MEGKNSMTWNTMIDGYMRKGKIDDAYKLFDEMPERGLISWTAMINGFVKKGFHEEALVWF 190
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ+S + D I+++L A NL AL G W+ Y+ +N++ N+ ID++C C
Sbjct: 191 REMQSSGVEPDYVAIIAVLAACTNLGALSFGLWVHRYLVSRDFRNNVRVNNSSIDLHCRC 250
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VE AQ + SW ++IV + +G+ D++L F +M KP+ V + G L
Sbjct: 251 GCVELAQPVFDHMEKRTVVSWNSVIVVFSANGHADESLVYFRRMQEEGFKPNAVTFTGAL 310
Query: 173 SACTH 177
+AC+H
Sbjct: 311 TACSH 315
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 69/160 (43%), Gaps = 28/160 (17%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G V++A+ FD M +R V W ++I + E+L F+ MQ + T L
Sbjct: 251 GCVELAQPVFDHMEKRTVVSWNSVIVVFSANGHADESLVYFRRMQEEGFKPNAVTFTGAL 310
Query: 80 TARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIV 138
TA +++ ++ G + +T + ++ I L+D+Y
Sbjct: 311 TACSHVGLVEEGLRYFQTMKKEYRISPRIEHYGCLVDLY--------------------- 349
Query: 139 GLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC-TH 177
+ +G + AL++ M +KP+EV +L+AC TH
Sbjct: 350 --SRAGRLEDALNVVQSM---PMKPNEVVIGSLLAACRTH 384
>gi|297733949|emb|CBI15196.3| unnamed protein product [Vitis vinifera]
Length = 467
Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 113/190 (59%), Gaps = 15/190 (7%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+++++SW ++++ Y+ G VD AR+ FD+MPER+ V WT MI G ++ R ++AL LF E
Sbjct: 96 DRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHE 155
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKND----IFAGNALIDMYC 118
M+ + + D+ +V+ L+A A L L LG WI +YID+ + + N+LI MY
Sbjct: 156 MRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYA 215
Query: 119 ICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI---KPDEVA 167
C ++KA Q+ SWT+MI G A G+ ++AL +F M R +PD +
Sbjct: 216 SCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGIT 275
Query: 168 YVGVLSACTH 177
++GVL AC+H
Sbjct: 276 FIGVLCACSH 285
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 42/176 (23%)
Query: 43 MIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK 102
MI G+ + + + L+ M + +EFT ++ A R L GE + + N
Sbjct: 1 MIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVVANG 60
Query: 103 VKNDIFAGNALIDMYCI----------------------------------CADVEKA-- 126
++F +L+++Y I C DV+ A
Sbjct: 61 YCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARR 120
Query: 127 ------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+++ SWTTMI G A G +AL +F +M RA +K D+VA V LSAC
Sbjct: 121 IFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACA 176
>gi|255586940|ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223525897|gb|EEF28314.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 111/181 (61%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+++W ++ G VD +R+ FD+M R+ V W +MI GY+R RF +AL LFQ+MQ
Sbjct: 187 DIVAWNTMIMGVAKCGLVDESRRLFDKMSLRNAVSWNSMISGYVRNGRFFDALELFQKMQ 246
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
I EFT+VS+L A A L A+ GEWI Y+ K K + + A+IDMY C ++
Sbjct: 247 VERIEPSEFTMVSLLNACACLGAIRQGEWIHDYMVKKKFELNPIVVTAIIDMYSKCGSID 306
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
KA ++ W +MI+GLA++G ++AL +FS + + ++PD+V+++ VL+AC
Sbjct: 307 KAVQVFQSAPRRGLSCWNSMILGLAMNGQENEALQLFSVLQSSDLRPDDVSFIAVLTACD 366
Query: 177 H 177
H
Sbjct: 367 H 367
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 81/196 (41%), Gaps = 40/196 (20%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ-TSNIMGDEFTIVSI 78
G ++ A F Q+ + W +I G+ R + + +++L+ +M TS + T S+
Sbjct: 69 GDINYAYLVFVQIQNPNIFAWNTIIRGFSRSSVPQNSISLYIDMLLTSPVQPQRLTYPSV 128
Query: 79 LTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DK 130
A A L G + + K ++ND F N ++ MY C +A+K D
Sbjct: 129 FKAFAQLDLASEGAQLHGKMIKLGLENDSFIRNTILFMYVNCGFTSEARKVFDRGMDFDI 188
Query: 131 FSWTTMIVGLAISGNGDK-------------------------------ALDMFSQMLRA 159
+W TMI+G+A G D+ AL++F +M
Sbjct: 189 VAWNTMIMGVAKCGLVDESRRLFDKMSLRNAVSWNSMISGYVRNGRFFDALELFQKMQVE 248
Query: 160 SIKPDEVAYVGVLSAC 175
I+P E V +L+AC
Sbjct: 249 RIEPSEFTMVSLLNAC 264
>gi|125528817|gb|EAY76931.1| hypothetical protein OsI_04889 [Oryza sativa Indica Group]
Length = 565
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 65/185 (35%), Positives = 112/185 (60%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D SW+ ++ Y G + AR+ FD+MP ++ V WTAMI+GY + +E+L LF
Sbjct: 205 MPTRDSTSWSVLIVGYCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVPKESLALF 264
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EM+ + I D T+V +++A + + + +L W+ +Y+DK +++ + AL+DM+ C
Sbjct: 265 REMEAAGIEPDAATMVGVISAASQIGSTELAGWVGSYVDKKRIERNDKVLTALVDMHAKC 324
Query: 121 ADVEK--------AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+V++ AQ D + +T +I GLA G+ AL +F +M S+ PD + +VGVL
Sbjct: 325 GNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVWPDPITFVGVL 384
Query: 173 SACTH 177
+AC+H
Sbjct: 385 TACSH 389
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V + G VD A F ++ + D +TA+I G + AL +F+ MQ ++
Sbjct: 315 TALVDMHAKCGNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVW 374
Query: 70 GDEFTIVSILTARANLRALDLG 91
D T V +LTA ++ +D G
Sbjct: 375 PDPITFVGVLTACSHAGLVDKG 396
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 111/187 (59%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SWT ++ Y G ++ A FD +P +D V WTAM+ GY + R +EAL F
Sbjct: 204 MSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYF 263
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV--KNDIFAGNALIDMYC 118
Q+MQ + DE T+ +++A A L A+ WI+ +++ ++ G+ALIDMY
Sbjct: 264 QKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYS 323
Query: 119 ICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C ++A +++ FS+++MI+G A+ G AL +F ML+ I+P++V ++G
Sbjct: 324 KCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIG 383
Query: 171 VLSACTH 177
+LSAC+H
Sbjct: 384 ILSACSH 390
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 76/188 (40%), Gaps = 40/188 (21%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88
F Q+ + LWTAMI GY E+ + M+ + FT ++ A +
Sbjct: 99 FGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNM 158
Query: 89 DLGEWIKTY-IDKNKVKNDIFAGNALIDMYCIC--------------------------- 120
DLG+ + I +D++ GN++ID+Y C
Sbjct: 159 DLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVA 218
Query: 121 ----ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
D+E A KD +WT M+ G A +G +AL+ F +M ++ DEV
Sbjct: 219 YAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTL 278
Query: 169 VGVLSACT 176
GV+SAC
Sbjct: 279 AGVISACA 286
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 75/171 (43%), Gaps = 25/171 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+V+ +A++ Y G D A + F+ M ER+ +++MI GY R AL LF +M
Sbjct: 311 NVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDML 370
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ I ++ T + IL+A ++ ++ G + ++K F D Y D+
Sbjct: 371 KTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEK------FFGVAPSPDHYACMVDL- 423
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
L +G ++ALD+ M ++P+ + +L AC
Sbjct: 424 ---------------LGRAGCLEEALDLVKTM---PMEPNGGVWGALLGAC 456
>gi|125525262|gb|EAY73376.1| hypothetical protein OsI_01257 [Oryza sativa Indica Group]
Length = 499
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 109/181 (60%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+SW ++ Y+ G + AR+ FD MP R+ V WT +I Y ++ + EA+ +F+ MQ
Sbjct: 137 DVVSWNVMIDGYVKSGDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQ 196
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
I D ++S+L+A +L +DLGEW+ ++ + + +I NA+IDMY C V+
Sbjct: 197 VEGIEPDGVALLSVLSACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVK 256
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
KA QK +WTTMI G A+ G G +A+++F +M + ++ P+++ ++ VLS C+
Sbjct: 257 KALEVFEGMEQKSIVTWTTMIAGFALHGLGSEAVELFRRMEKENVSPNDITFLAVLSVCS 316
Query: 177 H 177
H
Sbjct: 317 H 317
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
AI+ Y+ G V A + F+ M ++ V WT MI G+ EA+ LF+ M+ N+
Sbjct: 244 AIIDMYVKCGSVKKALEVFEGMEQKSIVTWTTMIAGFALHGLGSEAVELFRRMEKENVSP 303
Query: 71 DEFTIVSILTARANLRALDLGEW-IKTYIDKNKVKNDIFAGNALIDM 116
++ T +++L+ +++ DLG W KT + + K+K + +ID+
Sbjct: 304 NDITFLAVLSVCSHVGLTDLGRWYFKTMVSQYKIKPRVEHYGCMIDL 350
>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 1024
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 110/186 (59%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV SWT++V+ Y G ++ AR+ FDQ P ++ V W+AMI GY + N+ +E+L LF
Sbjct: 419 MATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLF 478
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK-VKNDIFAGNALIDMYCI 119
EM ++ E T+VS+L+A L L+LG+WI Y K + + NA++DMY
Sbjct: 479 HEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAK 538
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C ++ A +++ SW TMI G A +G +A+++F QM +P+ + +V +
Sbjct: 539 CGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSL 598
Query: 172 LSACTH 177
L+AC+H
Sbjct: 599 LTACSH 604
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 39/204 (19%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
++ Y RG + ARQ FD+ ++D V WT MIDGY + EA+ +F+ M S++
Sbjct: 297 GLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEP 356
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC---ADVEK-- 125
+E T++++++A +++ L++G+ + +++ ++ + NAL+DMY C D +
Sbjct: 357 NEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELF 416
Query: 126 ---AQKDKFSWTTMIVGLAISGNGDKA-------------------------------LD 151
A KD +SWT+M+ G A G+ + A L
Sbjct: 417 DRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLK 476
Query: 152 MFSQMLRASIKPDEVAYVGVLSAC 175
+F +M+ + P E V VLSAC
Sbjct: 477 LFHEMMERGVVPIEHTLVSVLSAC 500
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 14/185 (7%)
Query: 6 VISWTAIVSRYI------NRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTL 59
+I+ VSR I + G + A F+++ + + +W MI GY + A +
Sbjct: 185 IITHAFPVSRVIAFCALAHSGDLHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSF 244
Query: 60 FQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
F M + D + V L A + GE + + K ++ N LI Y
Sbjct: 245 FVYMFQLRVEMDSRSFVFALKACQQFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAE 304
Query: 120 CADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
++ A+ KD +WTTMI G A ++A+++F ML + ++P+EV + V
Sbjct: 305 RGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAV 364
Query: 172 LSACT 176
+SAC+
Sbjct: 365 VSACS 369
>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 726
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ +K +I TA++S Y G V AR FDQM ERD V W+AMI GY ++ +EAL LF
Sbjct: 283 LSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLF 342
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM + D+ T++S+++A +++ AL WI TY+D++ + NALIDMY C
Sbjct: 343 DEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKC 402
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ KA +K+ SW++MI A+ GN D A+ +F +M +I+P+ V ++GVL
Sbjct: 403 GNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVL 462
Query: 173 SACTH 177
AC H
Sbjct: 463 YACGH 467
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 94/212 (44%), Gaps = 39/212 (18%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D T +++ Y + ++ AR FD+M D V W +IDGY + + +AL LF++M+
Sbjct: 155 DPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMR 214
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+S++ D + ++L+A + L G I ++ N D ALI+MY C ++
Sbjct: 215 SSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMD 274
Query: 125 KAQK---------------------------------------DKFSWTTMIVGLAISGN 145
A+K D W+ MI G A S
Sbjct: 275 LARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQ 334
Query: 146 GDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+AL +F +ML+ PD++ + V+SAC+H
Sbjct: 335 PQEALKLFDEMLQKRSVPDQITMLSVISACSH 366
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 66/158 (41%), Gaps = 9/158 (5%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG-DEFTIVSILTARANLRA 87
F Q+P ++ R + + + L+ ++ N D F+ S+L A + + A
Sbjct: 77 FSQIPNPHTHFSNQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVSA 136
Query: 88 LDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVG 139
+ G I K +D F LI MY C + A D +W +I G
Sbjct: 137 FNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDG 196
Query: 140 LAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+G+ D AL +F M + +KPD V VLSAC H
Sbjct: 197 YCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGH 234
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 81/171 (47%), Gaps = 8/171 (4%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G + AR+ F+ MP ++ + W++MI+ + A+ LF+ M+ NI
Sbjct: 394 ALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEP 453
Query: 71 DEFTIVSILTARANLRALDLGEWI-KTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
+ T + +L A + ++ GE + + I+++ + ++D+YC + KA
Sbjct: 454 NGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIEL 513
Query: 127 -QKDKFSWTTMIVGLAISG---NGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+ F+ +I G +S +G+ L F+ ++PD + VLS
Sbjct: 514 IETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLS 564
>gi|354805159|gb|AER41579.1| CRR4 [Oryza brachyantha]
Length = 626
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 74/185 (40%), Positives = 110/185 (59%), Gaps = 9/185 (4%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
+ KDV+SWTA+VS Y G +D A++ FD MP ++ V W AMI GY +R+ EAL FQ
Sbjct: 264 QKKDVVSWTAMVSAYAKIGDLDTAKELFDHMPLKNLVSWNAMITGYNHNSRYGEALRTFQ 323
Query: 62 EMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M DE T+VS+++A A L +++ WI ++I K+ V I GNALIDM+ C
Sbjct: 324 LMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIRKSNVHLTIALGNALIDMFAKC 383
Query: 121 ADVEKAQKDKF--------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
DV +AQ + +WTTMI G A +G +AL +++ M R ++ D++ ++ L
Sbjct: 384 GDVGRAQSIFYEMKTRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDDMVFIAAL 443
Query: 173 SACTH 177
+AC H
Sbjct: 444 AACVH 448
Score = 87.0 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 52/186 (27%), Positives = 88/186 (47%), Gaps = 16/186 (8%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++DV+SW +I+ Y++ G A + F+ MPER+ V W ++ G+ RV A T+F
Sbjct: 169 MVDRDVVSWNSIIGVYMSSGDYTGAMELFEAMPERNVVSWNTLVAGFARVGDMVTAQTVF 228
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M + N + ++S + ++ A ++ D+ K D+ + A++ Y
Sbjct: 229 DRMPSRNAISWNL-MISGYASSGDVEA------ARSMFDRMDQKKDVVSWTAMVSAYAKI 281
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFS-QMLRASIKPDEVAYVGV 171
D++ A+ K+ SW MI G + +AL F ML +PDE V V
Sbjct: 282 GDLDTAKELFDHMPLKNLVSWNAMITGYNHNSRYGEALRTFQLMMLEGRFRPDEATLVSV 341
Query: 172 LSACTH 177
+SAC
Sbjct: 342 VSACAQ 347
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 115/182 (63%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+D IS+TA+++ Y G +D ARQ FD+MP +D V W AMI GY ++ R +EAL LF++M
Sbjct: 193 RDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDM 252
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ +N+ +E TIVS+L+A A ALDLG ++++I+ + +++ NALIDMY C D+
Sbjct: 253 RKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDL 312
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ A ++D SW MI G + +AL +F +ML + ++P E+ ++ +L +C
Sbjct: 313 QTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSC 372
Query: 176 TH 177
H
Sbjct: 373 AH 374
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 102/175 (58%), Gaps = 8/175 (4%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G + AR+ FD M ERD + W MI GY + ++EAL LF+EM S +
Sbjct: 301 ALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEP 360
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--- 127
E T +SIL + A+L A+DLG+WI YI+KN +LID+Y C ++ A+
Sbjct: 361 TEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVF 420
Query: 128 -----KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
K SW MI GLA+ G DKA ++FS+M I+P+E+ +VG+LSAC H
Sbjct: 421 DGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKH 475
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 78/198 (39%), Gaps = 39/198 (19%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G + A F+ + E + +W +MI G AL F M S + + +T +L
Sbjct: 77 GDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLL 136
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ------------ 127
+ A L + G+ I ++ K +D+F +LI+MY ++ AQ
Sbjct: 137 KSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAI 196
Query: 128 ---------------------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS 160
KD SW MI G A G +AL +F M +A+
Sbjct: 197 SFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKAN 256
Query: 161 IKPDEVAYVGVLSACTHN 178
+ P+E V VLSAC +
Sbjct: 257 VPPNESTIVSVLSACAQS 274
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 66/161 (40%), Gaps = 27/161 (16%)
Query: 16 YINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTI 75
Y G + ARQ FD M + W AMI G + +A LF +M + I +E T
Sbjct: 407 YAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITF 466
Query: 76 VSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWT 134
V IL+A + +DLG ++ + + K+ K+Q +
Sbjct: 467 VGILSACKHAGLVDLGQQFFSSMVQDYKIS-------------------PKSQH----YG 503
Query: 135 TMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
MI L +G ++A + M +KPD + +L AC
Sbjct: 504 CMIDLLGRAGLFEEAESLLQNM---EVKPDGAIWGSLLGAC 541
>gi|224094065|ref|XP_002310070.1| predicted protein [Populus trichocarpa]
gi|222852973|gb|EEE90520.1| predicted protein [Populus trichocarpa]
Length = 438
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 110/185 (59%), Gaps = 10/185 (5%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
K+++SW ++V Y G +D+AR FD MPERD W+ +IDGY + + +A+ +F++M
Sbjct: 74 KNLVSWNSMVDGYAKCGYLDLARGLFDLMPERDVRSWSCLIDGYAKSGNYGDAMAVFEKM 133
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+TS +E T+VS+L A A+L ALD G + Y+ N + ++ +LIDMY C V
Sbjct: 134 RTSGPKANEVTMVSVLCACAHLGALDKGRMMHQYLVDNGFELNLVLRTSLIDMYAKCGAV 193
Query: 124 EKA----------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
E+A + D W MI GLA G ++LD++++M A IKPDE+ ++ +LS
Sbjct: 194 EEAFAVFRGVSLRKSDVLIWNAMIGGLATHGLVKESLDLYTEMQIAGIKPDEITFLCLLS 253
Query: 174 ACTHN 178
AC H
Sbjct: 254 ACAHG 258
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 59/154 (38%), Gaps = 39/154 (25%)
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M I D T + A + L +LG I ++ K+ + D F N+LI MY C D
Sbjct: 1 MLQVGIYPDHLTYPFLAKATSRLLRKELGVSIHGHVIKSGFEIDRFVANSLIHMYGSCGD 60
Query: 123 VEKAQK---------------------------------------DKFSWTTMIVGLAIS 143
+ A+K D SW+ +I G A S
Sbjct: 61 IVYARKVFDGTPVKNLVSWNSMVDGYAKCGYLDLARGLFDLMPERDVRSWSCLIDGYAKS 120
Query: 144 GNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
GN A+ +F +M + K +EV V VL AC H
Sbjct: 121 GNYGDAMAVFEKMRTSGPKANEVTMVSVLCACAH 154
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPER--DYVLWTAMIDGYLRVNRFREALTLFQE 62
+++ T+++ Y G V+ A F + R D ++W AMI G +E+L L+ E
Sbjct: 176 NLVLRTSLIDMYAKCGAVEEAFAVFRGVSLRKSDVLIWNAMIGGLATHGLVKESLDLYTE 235
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN 101
MQ + I DE T + +L+A A+ + ++ + KN
Sbjct: 236 MQIAGIKPDEITFLCLLSACAHGGLVKQASYVFEGLGKN 274
>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
Length = 914
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 74/198 (37%), Positives = 103/198 (52%), Gaps = 21/198 (10%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD +SW I+ Y G+V+ A + F +MPER+ V W+ M+ GY + A +F
Sbjct: 539 MPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIF 598
Query: 61 QEMQTSNIMG------------DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIF 108
+M N++ D +VSIL A A +L LG+ I Y+ K +
Sbjct: 599 DKMPGKNLVTWTIMMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTH 658
Query: 109 AGNALIDMYCICA---------DVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159
NALIDM+C C D E QKD SW ++I G A+ G+GDKAL++F+QM +
Sbjct: 659 VCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQ 718
Query: 160 SIKPDEVAYVGVLSACTH 177
PD V + VLSACTH
Sbjct: 719 GFNPDAVTMINVLSACTH 736
Score = 42.0 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 42/156 (26%), Positives = 62/156 (39%), Gaps = 17/156 (10%)
Query: 12 IVSRYINRGQVDIARQCFDQM--PERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+VS Y + +R+ FD + P D L M+ Y R+AL F M +
Sbjct: 390 LVSAYALLRLLPSSRRVFDAIRDPHADAFLANTMLRAYALGGAPRDALAAFSAMPRRDSF 449
Query: 70 GDEFTIVSILTAR-ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
F I ++ A A +RA + +++ K D F GNALID Y A+K
Sbjct: 450 TYSFLIKALSAAGVAPVRA------VHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARK 503
Query: 129 --------DKFSWTTMIVGLAISGNGDKALDMFSQM 156
D SW T + + G A +F +M
Sbjct: 504 VFDEMPERDVVSWNTAMAAMVREGELAGARKLFDEM 539
>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
Length = 569
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 113/190 (59%), Gaps = 15/190 (7%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+++++SW ++++ Y+ G VD AR+ FD+MPER+ V WT MI G ++ R ++AL LF E
Sbjct: 198 DRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHE 257
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKND----IFAGNALIDMYC 118
M+ + + D+ +V+ L+A A L L LG WI +YID+ + + N+LI MY
Sbjct: 258 MRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYA 317
Query: 119 ICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI---KPDEVA 167
C ++KA Q+ SWT+MI G A G+ ++AL +F M R +PD +
Sbjct: 318 SCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGIT 377
Query: 168 YVGVLSACTH 177
++GVL AC+H
Sbjct: 378 FIGVLCACSH 387
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 86/207 (41%), Gaps = 42/207 (20%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
++S YI G + A + F+++ +W MI G+ + + + L+ M + +
Sbjct: 72 LLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPN 131
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI------------ 119
EFT ++ A L GE + + N ++F +L+++Y I
Sbjct: 132 EFTYSFLIGGCARSXLLREGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARR 191
Query: 120 ----------------------CADVEKA--------QKDKFSWTTMIVGLAISGNGDKA 149
C DV+ A +++ SWTTMI G A G +A
Sbjct: 192 VFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQA 251
Query: 150 LDMFSQMLRASIKPDEVAYVGVLSACT 176
L +F +M RA +K D+VA V LSAC
Sbjct: 252 LHLFHEMRRAGVKLDQVALVAALSACA 278
>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
Length = 645
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 106/186 (56%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + ++S T +++ Y G++D AR F+ M ERD V W MI GY + E+L LF
Sbjct: 202 MPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLF 261
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M + + +E T++++L+A L AL+ G WI +YI+ ++ ++ G ALIDMY C
Sbjct: 262 RRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKC 321
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E A+ KD +W +MIVG A+ G AL +F +M KP ++ ++G+L
Sbjct: 322 GSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGIL 381
Query: 173 SACTHN 178
SAC H
Sbjct: 382 SACGHG 387
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 87/199 (43%), Gaps = 43/199 (21%)
Query: 16 YINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTI 75
Y G++D + F+ E + ++A+I +++ F A + +M + + + FT
Sbjct: 89 YAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTF 148
Query: 76 VSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC-----ICA--------- 121
S+L + +L+ G+ + K + +D++ L+D+Y +CA
Sbjct: 149 SSVLKS----CSLESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPE 204
Query: 122 -----------------DVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
+++KA ++D W MI G A SG +++L +F +M
Sbjct: 205 RSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRM 264
Query: 157 LRASIKPDEVAYVGVLSAC 175
L A P+EV + VLSAC
Sbjct: 265 LVAKAIPNEVTVLAVLSAC 283
>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 588
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 103/163 (63%), Gaps = 8/163 (4%)
Query: 24 IARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARA 83
I + FD M E+D V+W AMI G ++ R ++AL LFQEMQTSN DE T++ L+A +
Sbjct: 248 IVSKLFDDMEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDEITMIHCLSACS 307
Query: 84 NLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTT 135
L ALD+G WI YI+K+ + ++ G +L+DMY C ++ +A ++ ++T
Sbjct: 308 QLGALDVGIWIHRYIEKHSLSLNVALGTSLVDMYAKCGNISEALCVFHGIQTRNSLTYTA 367
Query: 136 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+I GLA+ G+ A+ F++M+ A I PDE+ ++G+LSAC H
Sbjct: 368 IIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHG 410
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 95/187 (50%), Gaps = 21/187 (11%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A + + + G+++ AR+ FD+ P RD V W +I+GY ++ +A+ +++ M++ +
Sbjct: 121 ASIHMFASCGEMENARKVFDESPVRDLVSWNCLINGYKKIGEGEKAIEVYKVMESEGVKP 180
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA---- 126
D+ T++ ++++ A L L+ G+ Y+ N ++ I NAL+DM+ C D+ +A
Sbjct: 181 DDVTMIGLVSSCAMLGDLNRGKEFYEYVKANGLRMTIPLANALMDMFSKCGDIHEARRIF 240
Query: 127 -----------------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
+KD W MI G + AL +F +M ++ PDE+ +
Sbjct: 241 DNLEKRTIVSKLFDDMEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDEITMI 300
Query: 170 GVLSACT 176
LSAC+
Sbjct: 301 HCLSACS 307
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 64/159 (40%), Gaps = 25/159 (15%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T++V Y G + A F + R+ + +TA+I G A++ F EM + I
Sbjct: 335 TSLVDMYAKCGNISEALCVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIA 394
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD------- 122
DE T + +L+A + G I+T D F N + Y I D
Sbjct: 395 PDEITFIGLLSACCH------GGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGL 448
Query: 123 VEKAQK---------DKFSWTTMIVGLAISGN---GDKA 149
+E+A K D W ++ G + GN G+KA
Sbjct: 449 LEEADKLMESMPMEADAAVWGALLFGCRMHGNVKLGEKA 487
>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 114/189 (60%), Gaps = 15/189 (7%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ KDV SWT++++ +I ++ AR+ FD+MP R+ V WTAMI GY++ L LF
Sbjct: 164 MEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELF 223
Query: 61 QEMQTSNIMGDEF----TIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116
QEM+ G ++ TIV++L+ A++ A DLG + Y++K + D+ NAL+DM
Sbjct: 224 QEMRAE---GKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDM 280
Query: 117 YCICADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
Y + E ++D FSWTTMI GLA+ G G AL+ FS M ++ + P+EV
Sbjct: 281 YAKSGALVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPNEVTL 340
Query: 169 VGVLSACTH 177
+ VLSAC+H
Sbjct: 341 LSVLSACSH 349
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 86/205 (41%), Gaps = 42/205 (20%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
+++ Y G A++ F+ + D V WT +I YL ++ +A ++F + S + D
Sbjct: 43 LLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPD 102
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY---------CI--- 119
F +V ++A + + L G + + + ++ +D GNALIDMY C
Sbjct: 103 SFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFK 162
Query: 120 -------------------CADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDM 152
C D+E A+ ++ SWT MI G L++
Sbjct: 163 TMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLEL 222
Query: 153 FSQMLRASIK--PDEVAYVGVLSAC 175
F +M RA K P + V VLS C
Sbjct: 223 FQEM-RAEGKDWPTVITIVAVLSGC 246
Score = 39.7 bits (91), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 128 KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
D SWT +I + KA +FS + + ++PD VG +SAC H
Sbjct: 66 PDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGH 115
>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 113/185 (61%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D++SW +++ Y G++++AR+ FD+M +++ + W+ MIDGY + +EAL LF
Sbjct: 234 MPTRDLVSWNSMIDGYAKVGEMEVAREIFDKMLQKNVISWSIMIDGYAQHRDSKEALNLF 293
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++M I D ++V ++A + L ALD G WI Y+ +N++ DI AL+DMY C
Sbjct: 294 RQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKC 353
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++A +++ SW MIVGL ++G G +AL+ F+QM I D++ ++GVL
Sbjct: 354 GSRDEARRIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFTQMEMERIPMDDLLFLGVL 413
Query: 173 SACTH 177
AC+H
Sbjct: 414 MACSH 418
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 86/183 (46%), Gaps = 19/183 (10%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV ++S Y G+ AR FD E+D V W +M+ GY+ A +F EM
Sbjct: 144 DVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMP 203
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGE--WIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+++ I + +GE + + D + D+ + N++ID Y +
Sbjct: 204 ERDVVSWSIMI--------DGYGKKMGEVNRARVFFDSMPTR-DLVSWNSMIDGYAKVGE 254
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+E A QK+ SW+ MI G A + +AL++F QML IKPD V+ VG +SA
Sbjct: 255 MEVAREIFDKMLQKNVISWSIMIDGYAQHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSA 314
Query: 175 CTH 177
C+
Sbjct: 315 CSQ 317
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 11/154 (7%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
++VS+ +N V+ A F Q+ + + + M+ Y + AL + EM+ ++G
Sbjct: 52 SVVSKTLN---VNYAELVFAQIHQPNSFICNTMVKCYTESSTPERALRFYAEMRRKGLLG 108
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA---- 126
D +T +L A + L G ++ K D+F N LI MYC C + A
Sbjct: 109 DNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVF 168
Query: 127 ----QKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
+KD SW +M+ G G + A +MF +M
Sbjct: 169 DGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEM 202
>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
Length = 666
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 105/178 (58%), Gaps = 10/178 (5%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G+++ A F+ +P +D + W +I GY +N ++EAL LFQEM S
Sbjct: 263 ALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETP 322
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDK--NKVKNDIFAGNALIDMYCICADVEKA-- 126
++ T++SIL A A+L A+D+G WI YIDK V N +LIDMY C D+E A
Sbjct: 323 NDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQ 382
Query: 127 ------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
K SW MI G A+ G D + D+FS+M + I+PD++ +VG+LSAC+H+
Sbjct: 383 VFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHS 440
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 112/184 (60%), Gaps = 8/184 (4%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
++DV+S+TA++ Y +RG ++ A++ FD++P +D V W AMI GY ++EAL LF+
Sbjct: 153 PHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFK 212
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
+M +N+ DE T+V++++A A +++LG + ++ID + +++ NALID+Y C
Sbjct: 213 DMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCG 272
Query: 122 DVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
++E A KD SW T+I G +AL +F +MLR+ P++V + +L
Sbjct: 273 ELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILP 332
Query: 174 ACTH 177
AC H
Sbjct: 333 ACAH 336
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 39/190 (20%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A F+ + E + ++W M G+ + AL L+ M + ++ + +T +L + A
Sbjct: 44 AISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAK 103
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK---------------- 128
+A G+ I ++ K D++ +LI MY +E A K
Sbjct: 104 SKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTAL 163
Query: 129 -----------------------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165
D SW MI G A +GN +AL++F M++ +++PDE
Sbjct: 164 IKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDE 223
Query: 166 VAYVGVLSAC 175
V V+SAC
Sbjct: 224 STMVTVVSAC 233
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 109/180 (60%), Gaps = 8/180 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV T++V Y G ++ A + FD +P+++ V WTA+I GY+ V +FREA+ +F+ +
Sbjct: 146 DVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLL 205
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
N+ D FTIV +L+A L L+ GEWI I + + ++F G +L+DMY C ++E
Sbjct: 206 EMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNME 265
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
KA +KD SW MI G A++G +A+D+F QM R ++KPD VGVLSAC
Sbjct: 266 KARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACA 325
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 105/182 (57%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
++V T++V Y G ++ AR FD MPE+D V W AMI GY +EA+ LF +M
Sbjct: 246 RNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQM 305
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
Q N+ D +T+V +L+A A L AL+LGEW+ +D+N+ + G ALID+Y C +
Sbjct: 306 QRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSM 365
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+A +KD+ W +I GLA++G + +F Q+ + IKPD ++G+L C
Sbjct: 366 SRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGC 425
Query: 176 TH 177
TH
Sbjct: 426 TH 427
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 79/160 (49%), Gaps = 8/160 (5%)
Query: 26 RQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL 85
R F Q+ + + LW MI G + + F +A+ + M++ + + FT +L A A L
Sbjct: 66 RFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARL 125
Query: 86 RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK------DK--FSWTTMI 137
L LG I T + K D+F +L+ +Y C +E A K DK SWT +I
Sbjct: 126 LDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAII 185
Query: 138 VGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
G G +A+DMF ++L ++ PD V VLSACT
Sbjct: 186 SGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQ 225
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ Y G + A + F M E+D V+W A+I G + + LF +++ I
Sbjct: 353 TALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIK 412
Query: 70 GDEFTIVSILTARANLRALDLG 91
D T + +L + +D G
Sbjct: 413 PDGNTFIGLLCGCTHAGLVDEG 434
>gi|356571125|ref|XP_003553731.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g05240-like [Glycine max]
Length = 552
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 109/184 (59%), Gaps = 9/184 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N ++I TAI+ Y G IAR F++MP+R+ V W +MI+ Y + R +EAL LF +
Sbjct: 233 NSNIILATAILEMYAKCGSFKIARDLFNKMPQRNIVSWNSMINAYNQYERHKEALDLFFD 292
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M TS I D+ T +S+L+ A+L AL LG+ + Y+ K + DI AL+DMY
Sbjct: 293 MWTSGIYPDKATFLSVLSVCAHLCALALGQTVHAYLXKTGIGTDISLATALLDMYAKTGG 352
Query: 123 VEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGVLS 173
+ AQK D WT+MI GLA+ G+G++AL MF M +S+ PD + Y+GVL
Sbjct: 353 LGSAQKIFSSLQKRDVVMWTSMINGLAMHGDGNEALGMFQTMHEDSSLVPDHITYIGVLF 412
Query: 174 ACTH 177
AC+H
Sbjct: 413 ACSH 416
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 15/188 (7%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + T ++ Y++ + + FD +P + V WT +I GY+ N+ EAL +F++M
Sbjct: 127 DAYTATGLLHMYVSCADMKSGLKVFDNIPIWNVVAWTCLIAGYVNNNQPYEALKVFKDMS 186
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK-------NKVKNDIFAGNALIDMY 117
+ +E T+V+ L A R D G+W+ +I K + ++I A+++MY
Sbjct: 187 HCGVEPNEITMVNALIXCARSRDFDTGQWVHQHIRKAGYDPFMSTSNSNIILATAILEMY 246
Query: 118 CICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
C + A Q++ SW +MI +ALD+F M + I PD+ ++
Sbjct: 247 AKCGSFKIARDLFNKMPQRNIVSWNSMINAYNQYERHKEALDLFFDMWTSGIYPDKATFL 306
Query: 170 GVLSACTH 177
VLS C H
Sbjct: 307 SVLSVCAH 314
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 8/164 (4%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G ++ A F Q+ +W +MI G++ + R ++ L++++ + D FT +L
Sbjct: 41 GDINNADLVFRQIDAPSVYIWNSMIRGFVNNHNPRMSMLLYRQLIENGYSPDHFTFPFVL 100
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKF 131
A + D G+ I I K+ + D + L+ MY CAD++ K +
Sbjct: 101 KACCAIADQDCGKCIHCCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPIWNVV 160
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+WT +I G + +AL +F M ++P+E+ V L C
Sbjct: 161 AWTCLIAGYVNNNQPYEALKVFKDMSHCGVEPNEITMVNALIXC 204
>gi|359476090|ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Vitis vinifera]
Length = 515
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D +SW ++S ++ GQ+ AR F+++ ++ WTA++ GY R+ AL F
Sbjct: 152 MTERDAVSWNTLISGHVRLGQMRRARAIFEELQDKTIFSWTAIVSGYARIGCHAVALEFF 211
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ MQ +I DE ++VS+L A A L AL+LG+WI Y DK DI NALI++Y
Sbjct: 212 RRMQMVDIELDEISLVSVLPACAQLGALELGKWIHIYADKAGFLRDICVCNALIEVYAKR 271
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+++ ++D SW+TMIVGLA G +A+++F +M +A ++P+ + +VG+L
Sbjct: 272 GSMDEGRRLFHKMNERDVISWSTMIVGLANHGRAREAIELFQEMQKAKVEPNIITFVGLL 331
Query: 173 SACTH 177
SAC H
Sbjct: 332 SACAH 336
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 25/172 (14%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+D+ A++ Y RG +D R+ F +M ERD + W+ MI G R REA+ LFQEM
Sbjct: 256 RDICVCNALIEVYAKRGSMDEGRRLFHKMNERDVISWSTMIVGLANHGRAREAIELFQEM 315
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
Q + + + T V +L+A A+ L+ G Y + + ++I G V
Sbjct: 316 QKAKVEPNIITFVGLLSACAHAGLLNEG---LGYFESMERDDNIEPG------------V 360
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E + ++ L +SG D+AL++ +M +KPD + + S+C
Sbjct: 361 EH-------YGCLVNLLGLSGRLDQALELIKKM---PMKPDSDIWGLLSSSC 402
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 86/211 (40%), Gaps = 44/211 (20%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN-- 67
T +V + G+ + A F ++ + + L+ AMI Y + A+T+ ++M +
Sbjct: 24 TKMVDMCNHHGETEYANLLFKRVADPNAFLYNAMIRAYKHNKVYILAITVHKQMLGHSHG 83
Query: 68 ---IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
D+FT ++ A L +LG+ + + K K++ N+L++MY C ++
Sbjct: 84 ENPXFPDKFTFPFVVKXCAGLMCYNLGKQVHGHAFKFGPKSNTVIENSLVEMYVKCDSLD 143
Query: 125 KAQK-------------------------------------DK--FSWTTMIVGLAISGN 145
A + DK FSWT ++ G A G
Sbjct: 144 DAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEELQDKTIFSWTAIVSGYARIGC 203
Query: 146 GDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
AL+ F +M I+ DE++ V VL AC
Sbjct: 204 HAVALEFFRRMQMVDIELDEISLVSVLPACA 234
>gi|224056823|ref|XP_002299041.1| predicted protein [Populus trichocarpa]
gi|222846299|gb|EEE83846.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 113/183 (61%), Gaps = 9/183 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+S+T +++ Y+ G +D+AR FD++ ++D VLW M+ Y++ EAL LF++M
Sbjct: 245 DVVSYTILINAYVEMGLIDLARDVFDEIVDKDRVLWNLMVHAYVKARCPNEALDLFEKMD 304
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK-VKNDIFAGNALIDMYCICADV 123
++ ++ DE T+VS+L A A++ L + +I++N V+ D+F ALI MY C V
Sbjct: 305 SAGVIPDENTMVSVLLACASISDLQCARLLHRFINRNSNVRQDVFLKTALITMYSKCGSV 364
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E+A D F+WT MI GLA +G G++AL MF++M I+P+E V VL+AC
Sbjct: 365 EEALVTFYKMEYTDVFTWTAMIEGLANNGYGNEALSMFNRMENQGIRPNESTLVSVLTAC 424
Query: 176 THN 178
H+
Sbjct: 425 IHS 427
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 90/215 (41%), Gaps = 42/215 (19%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ D+ A+V Y + G A FD+MP+RD W +++ Y N F E + LF++
Sbjct: 108 DSDIYVQNALVHFYGSVGNSTDACFLFDRMPDRDVASWNSLMGIYNTNNSFTEVMVLFKK 167
Query: 63 MQTSNIMGDEFTIVSILT--ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ + D+ ++V +L+ A+A + L+ G + Y+ K + NAL++ Y C
Sbjct: 168 LMCGCVKADKISLVIVLSACAQAQMEGLEYGRSVHGYVIKVGFGCFLNVDNALLNFYIKC 227
Query: 121 ADVEKAQ----------------------------------------KDKFSWTTMIVGL 140
+++ A KD+ W M+
Sbjct: 228 KEIDDASKMFDEFVHEGDVVSYTILINAYVEMGLIDLARDVFDEIVDKDRVLWNLMVHAY 287
Query: 141 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ ++ALD+F +M A + PDE V VL AC
Sbjct: 288 VKARCPNEALDLFEKMDSAGVIPDENTMVSVLLAC 322
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+DV TA+++ Y G V+ A F +M D WTAMI+G EAL++F M
Sbjct: 346 QDVFLKTALITMYSKCGSVEEALVTFYKMEYTDVFTWTAMIEGLANNGYGNEALSMFNRM 405
Query: 64 QTSNIMGDEFTIVSILTA 81
+ I +E T+VS+LTA
Sbjct: 406 ENQGIRPNESTLVSVLTA 423
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 12/147 (8%)
Query: 40 WTAMIDGYLR--VNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTY 97
W +I Y R + L ++T + D +T +L A + L G+ + T+
Sbjct: 42 WNCLIRAYSRSPTAPIKAILVYNFFIKTCSTRPDNYTYPCLLKACSRLFTDSNGKQVHTH 101
Query: 98 IDKNKVKNDIFAGNALIDMY---------CICADVEKAQKDKFSWTTMIVGLAISGNGDK 148
+ K + +DI+ NAL+ Y C D +D SW +++ + + +
Sbjct: 102 VIKTGLDSDIYVQNALVHFYGSVGNSTDACFLFD-RMPDRDVASWNSLMGIYNTNNSFTE 160
Query: 149 ALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ +F +++ +K D+++ V VLSAC
Sbjct: 161 VMVLFKKLMCGCVKADKISLVIVLSAC 187
>gi|449486568|ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Cucumis sativus]
Length = 532
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 105/184 (57%), Gaps = 8/184 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +SWT ++ Y N G VD AR+ FD +D +W AMI GY++ N F+E L +F
Sbjct: 166 MPELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLHMF 225
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ MQ + + DE IV+IL+A A++ ALD G WI Y+ + + + LIDMY C
Sbjct: 226 RLMQLTEVEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLGLPLTLRVSTGLIDMYAKC 285
Query: 121 ADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ E +Q+D W MI G+A+ G+G+ A+ +F +M +A IKPD + ++ V
Sbjct: 286 GHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIKPDNITFIAVW 345
Query: 173 SACT 176
AC+
Sbjct: 346 XACS 349
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 81/211 (38%), Gaps = 45/211 (21%)
Query: 12 IVSRYIN------RGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT 65
++SR +N G + A + F + ++ MI L F A+ +F +
Sbjct: 39 VLSRLLNFCAESRNGSLSHAFKLFQHIQHPTICIFNTMIKALLLRGEFLNAIAVFSAIFR 98
Query: 66 SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK 125
+ I D +T+ +L A A + + LGE I K + F GN+L+ MY ++
Sbjct: 99 NGIHPDTYTLPYVLKASARMTNIHLGESIHACTIKLGSAVNEFVGNSLLVMYRSFDNMRS 158
Query: 126 AQK--------DKFSWTTMIVGLAISGNGDKA---------------------------- 149
A++ SWT MI G A G+ D A
Sbjct: 159 ARQVFDEMPELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCF 218
Query: 150 ---LDMFSQMLRASIKPDEVAYVGVLSACTH 177
L MF M ++PDE V +LSAC H
Sbjct: 219 KEGLHMFRLMQLTEVEPDEAIIVTILSACAH 249
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T ++ Y G +D+A+ F++M +RD V W AMI G A+ LF EM+ + I
Sbjct: 276 TGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIK 335
Query: 70 GDEFTIVSILTARANLRALDLG 91
D T +++ A +N +D G
Sbjct: 336 PDNITFIAVWXACSNSGMVDEG 357
>gi|255581780|ref|XP_002531691.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528667|gb|EEF30682.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 434
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 109/185 (58%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++++SW A+++ Y+ G +A + FD+MPE++ + W +M+ GY RF+EAL LF
Sbjct: 230 MPSRNLVSWNAMINGYMKAGDFVLASELFDKMPEKNLISWNSMVAGYDLNERFKEALDLF 289
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M + + T+VS +A + L +L G+W+ +Y+ KN + D +LI+MY C
Sbjct: 290 LTMLERDFTPNHATLVSTFSAVSGLASLSTGKWMHSYMVKNGFQLDGVLATSLINMYSKC 349
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++E A +K WT +IVGL + G D AL+ F +M R ++P + ++GVL
Sbjct: 350 GNIESALSVFQLITKKKLGHWTAIIVGLGMHGMADNALEFFHEMCRTGMRPHAITFIGVL 409
Query: 173 SACTH 177
+AC+H
Sbjct: 410 NACSH 414
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 9/136 (6%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88
F+++ E VL+ +I Y++ +A+TLF ++ D FT+ ++ A L A
Sbjct: 65 FNKIQEPALVLYNILIKCYIQNQLSHDAITLFSQL-LHEFNPDGFTLPCVIKGCARLHAT 123
Query: 89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGL 140
G+ I + K + F ++L++MY C D++ A+ KD SW ++I G
Sbjct: 124 KEGKQIHGLVLKLGFGLNKFVSSSLVNMYSKCKDIDSAKKVFLSMDDKDLVSWNSLIDGY 183
Query: 141 AISGNGDKALDMFSQM 156
G + + +F +M
Sbjct: 184 VKCGQVELGMKLFEEM 199
>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 542
Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 69/186 (37%), Positives = 111/186 (59%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ + DV++ +++ Y G++D +R FD M R V W +MI GY+R + EAL LF
Sbjct: 192 LYDHDVVAINSMIMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELF 251
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+MQ EFT+VS+L A A+L AL G+W+ YI +N + ++ A+IDMYC C
Sbjct: 252 NKMQVEGFEVSEFTMVSLLNACAHLGALQHGKWVHDYIKRNHFELNVIVVTAIIDMYCKC 311
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGV 171
VE A ++ W ++I+GLA++G+ +A + FS++ + +KPD V+++GV
Sbjct: 312 GSVENAVEVFETCPRRGLSCWNSIIIGLAMNGHEREAFEFFSKLESSKLLKPDSVSFIGV 371
Query: 172 LSACTH 177
L+AC H
Sbjct: 372 LTACKH 377
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 45/201 (22%), Positives = 80/201 (39%), Gaps = 43/201 (21%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G ++ A + F +MP + W +I + R + + A++LF +M S I T S+
Sbjct: 75 GNINYAYKLFVRMPNPNLYSWNTIIRAFSRSSTPQFAISLFVDMLYSQIQPQYLTYPSVF 134
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM----------------------- 116
A A L G + + K ++ND F N +I M
Sbjct: 135 KAYAQLGHAHYGAQLHGRVVKLGLQNDQFICNTIIYMYANGGLMSEARRVFDGKKLELYD 194
Query: 117 ------------YCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQM 156
Y C ++++++ + SW +MI G +G +AL++F++M
Sbjct: 195 HDVVAINSMIMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELFNKM 254
Query: 157 LRASIKPDEVAYVGVLSACTH 177
+ E V +L+AC H
Sbjct: 255 QVEGFEVSEFTMVSLLNACAH 275
>gi|356501900|ref|XP_003519761.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g62890-like [Glycine max]
Length = 567
Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 66/176 (37%), Positives = 102/176 (57%), Gaps = 11/176 (6%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ SW AI+ G + IAR+ FDQMP R+ + W+ MI GY ++ AL+LF+ +Q
Sbjct: 123 DLPSWNAIIHANAKAGMIHIARKLFDQMPHRNVISWSCMIHGYASCGEYKAALSLFRSLQ 182
Query: 65 T---SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
T S + +E A L AL+ G+W+ YIDK +K D+ G +LIDMY C
Sbjct: 183 TLEGSKVQPNEXC--------ARLGALEHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCG 234
Query: 122 DVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+ +KD +W+ MI A+ G ++ L++F++M+ ++P+ V +VGVL AC H
Sbjct: 235 XIFGPEKDVMAWSAMITAFAMHGLSEECLELFARMVNDGVRPNAVTFVGVLCACVH 290
>gi|255539647|ref|XP_002510888.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550003|gb|EEF51490.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 554
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 118/195 (60%), Gaps = 17/195 (8%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMP-ERDYVLWTAMIDGYLRVNRFREALTL 59
M N+DV+SW +++ Y+ G +D + F +M R+ + W ++I G+++ R +EAL
Sbjct: 169 MSNRDVVSWNSMIIGYLRSGDLDQSLNLFRKMKINRNVITWNSIITGFVQGGRPKEALEF 228
Query: 60 FQEMQ--------TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGN 111
F EMQ + + D+ TI S+L+A A+L A+D G+W+ +Y+ ++ ++ D+ G
Sbjct: 229 FHEMQCLRDDDGINNKVRPDKITIASVLSACAHLGAIDHGKWVHSYLRRSGLECDMVIGT 288
Query: 112 ALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKP 163
AL+DMY C +++A +KD +WT MI A++G G +A DMF++M +KP
Sbjct: 289 ALVDMYGKCGCLQRAYEVFREMSEKDTLAWTAMISVFALNGFGKEAFDMFNEMEAGGVKP 348
Query: 164 DEVAYVGVLSACTHN 178
+ V +VG+LSAC H+
Sbjct: 349 NLVTFVGLLSACAHS 363
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 55/215 (25%)
Query: 18 NRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVN-------RFREALTLFQEMQTSNIMG 70
+ G + A F + + + + MI Y + R +AL L+++M ++I
Sbjct: 47 DSGSLAYAADIFHYIKKPNLPFYNIMIRAYASKSNVDYDDARLCQALILYKQMLCNDISP 106
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV------- 123
D T +L A+ G I + K + +D+F N+LI Y C V
Sbjct: 107 DCLTFPFLLKECTRNVAIYGGRGIHGHAIKLGLYSDLFVQNSLISFYSACEFVSNSRKLF 166
Query: 124 -EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQM-------------------------- 156
E + +D SW +MI+G SG+ D++L++F +M
Sbjct: 167 DEMSNRDVVSWNSMIIGYLRSGDLDQSLNLFRKMKINRNVITWNSIITGFVQGGRPKEAL 226
Query: 157 --------------LRASIKPDEVAYVGVLSACTH 177
+ ++PD++ VLSAC H
Sbjct: 227 EFFHEMQCLRDDDGINNKVRPDKITIASVLSACAH 261
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D++ TA+V Y G + A + F +M E+D + WTAMI + +EA +F EM+
Sbjct: 283 DMVIGTALVDMYGKCGCLQRAYEVFREMSEKDTLAWTAMISVFALNGFGKEAFDMFNEME 342
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGE---WI 94
+ + T V +L+A A+ ++ G WI
Sbjct: 343 AGGVKPNLVTFVGLLSACAHSGLVETGRCPNWI 375
>gi|357453191|ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240903|gb|ABD32761.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355485920|gb|AES67123.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 517
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 114/185 (61%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++SW ++ Y+ G VD A + FD++P ++ V WT +I G+++ + EAL F
Sbjct: 152 MGVRNLVSWNTMIDGYMKNGDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECF 211
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ + ++ D T+++I++A ANL AL LG W+ + K + ++++ N+LIDMY C
Sbjct: 212 REMQLAGVVPDFVTVIAIISACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARC 271
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E A Q++ SW ++IVG A++G DKAL F M + ++P+ V+Y L
Sbjct: 272 GCIELARQVFDGMSQRNLVSWNSIIVGFAVNGLADKALSFFRSMKKEGLEPNGVSYTSAL 331
Query: 173 SACTH 177
+AC+H
Sbjct: 332 TACSH 336
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 43/181 (23%)
Query: 38 VLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLR---ALDLGEWI 94
V WT+ I + + N F +A + F +M + + + T++++L+A A+ ++ G +
Sbjct: 53 VSWTSSISHHCKNNNFLKAASEFIQMLEAEVEPNHITLITLLSACAHSPSKTSITFGAAL 112
Query: 95 KTYIDKNKVK-NDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGN 145
T+ K+ ND+ G ALIDMY C ++ A+ ++ SW TMI G +G+
Sbjct: 113 HTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTMIDGYMKNGD 172
Query: 146 GD-------------------------------KALDMFSQMLRASIKPDEVAYVGVLSA 174
D +AL+ F +M A + PD V + ++SA
Sbjct: 173 VDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVIAIISA 232
Query: 175 C 175
C
Sbjct: 233 C 233
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 27/166 (16%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y G +++ARQ FD M +R+ V W ++I G+ +AL+ F+ M+ +
Sbjct: 263 SLIDMYARCGCIELARQVFDGMSQRNLVSWNSIIVGFAVNGLADKALSFFRSMKKEGLEP 322
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY-CICADVEKAQKD 129
+ + S LTA ++ +D E +K + D +K D + I+ Y C+ +A +
Sbjct: 323 NGVSYTSALTACSHAGLID--EGLKIFAD---IKRD-HRNSPRIEHYGCLVDLYSRAGRL 376
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
K +W D+ +M + P+EV +L+AC
Sbjct: 377 KEAW-----------------DVIKKM---PMMPNEVVLGSLLAAC 402
Score = 39.3 bits (90), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
SWT+ I + N KA F QML A ++P+ + + +LSAC H+
Sbjct: 54 SWTSSISHHCKNNNFLKAASEFIQMLEAEVEPNHITLITLLSACAHS 100
>gi|413943921|gb|AFW76570.1| hypothetical protein ZEAMMB73_758095 [Zea mays]
Length = 397
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 108/185 (58%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ISWT +VS Y GQ + AR + Q ++D +LWTAMI+ ++ F EALTLF
Sbjct: 161 MPERNIISWTILVSGYGITGQSNKARVLYYQCTQKDLILWTAMINACVQHGSFDEALTLF 220
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
Q+MQ ++ D+F+++++LT AN+ A D EWI Y + +K D L++M C
Sbjct: 221 QDMQLQHVEPDKFSVITLLTCYANIGAFDQCEWIHWYAEDKNMKIDAVRDTTLMEMCSKC 280
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
V+K+ KD +WT +I GL +G KAL++F + R+ KPD + + VL
Sbjct: 281 GHVDKSLQIFRRMQGKDVVAWTAIICGLTTNGQASKALELFEEKQRSKTKPDGITFTRVL 340
Query: 173 SACTH 177
SAC H
Sbjct: 341 SACCH 345
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G VD + Q F +M +D V WTA+I G + +AL LF+E Q S D T +L
Sbjct: 281 GHVDKSLQIFRRMQGKDVVAWTAIICGLTTNGQASKALELFEEKQRSKTKPDGITFTRVL 340
Query: 80 TARANLRALDLGE 92
+A + +D G+
Sbjct: 341 SACCHGGLVDEGQ 353
>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Vitis vinifera]
Length = 512
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 114/188 (60%), Gaps = 10/188 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV +W ++++ Y G ++ A + F MP R+ WTAMI GY + ++ +AL++F
Sbjct: 143 MTVRDVPTWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMF 202
Query: 61 QEMQTSNIM-GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
M+ M +E T+ S+L A ANL AL++GE I+ Y N +++ NAL++MY
Sbjct: 203 LMMEEETEMRPNEVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYAR 262
Query: 120 CADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C ++KA +++ SW +MI+GLA+ G D+A+++F +MLR PD+V +VG
Sbjct: 263 CGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVG 322
Query: 171 VLSACTHN 178
VL ACTH
Sbjct: 323 VLLACTHG 330
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 78/195 (40%), Gaps = 40/195 (20%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81
+ A + FD +P+ L+ +I Y + +L+ +M +E + + +A
Sbjct: 32 IPYAHKLFDFIPKPTVFLYNKLIQAYSSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSA 91
Query: 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI---------------------- 119
A+L + G + T+ K+ D+FA AL+DMY
Sbjct: 92 CASLSSHQQGRMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTW 151
Query: 120 ---------CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS-I 161
C D+E A ++ SWT MI G A +G KAL MF M + +
Sbjct: 152 NSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEM 211
Query: 162 KPDEVAYVGVLSACT 176
+P+EV VL AC
Sbjct: 212 RPNEVTLASVLPACA 226
>gi|147841473|emb|CAN62101.1| hypothetical protein VITISV_033310 [Vitis vinifera]
Length = 396
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 115/181 (63%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
++I TA++ Y+ G VD R FD M RD V W+AMI GY + R EAL LF+ M+
Sbjct: 40 NMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVXWSAMIAGYAQNGRSNEALELFEXMK 99
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
++ I ++ T+VS+L+A A L +++ GE I +Y++ + ++++ +AL+ MY C ++
Sbjct: 100 SAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNII 159
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
KA Q+D +W +MI+GLAI+G + A+ ++++M +KP+ + +VG+L+ACT
Sbjct: 160 KARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLLTACT 219
Query: 177 H 177
H
Sbjct: 220 H 220
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFQEMQTSNI 68
+A++ Y G + ARQ FD++P+RD V W +MI G L +N F E A+ L+ M+ +
Sbjct: 146 SALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMG-LAINGFAEDAIALYNRMKEIEV 204
Query: 69 MGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYC 118
+ T V +LTA + ++LG E+ ++ + + +I ++D++C
Sbjct: 205 KPNNITFVGLLTACTHAGHVELGLEFFRSMRSDHNISPNIEHFACIVDLFC 255
>gi|223946989|gb|ACN27578.1| unknown [Zea mays]
gi|414586292|tpg|DAA36863.1| TPA: hypothetical protein ZEAMMB73_743648 [Zea mays]
Length = 545
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 71/186 (38%), Positives = 109/186 (58%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ KDV+SW ++S + GQ+ AR+ F MP++ V WTA++ GY V F A+ +F
Sbjct: 177 MREKDVVSWNTLISAHARMGQMRRARELFYSMPDKTVVSWTALVSGYTAVGDFTGAVEVF 236
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ MQ D+ +IV++L A A L AL+LG WI Y K+ + ++ NAL++MY C
Sbjct: 237 RLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCSKHGMLGKVYICNALMEMYAKC 296
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGV 171
+E+A +KD SW+T I GLA G +A+ +F M R + P+ + +VG+
Sbjct: 297 GCIEEALQLFHGMSEKDVISWSTAIGGLAAHGRAREAVRLFEVMDREGRVMPNGITFVGL 356
Query: 172 LSACTH 177
LSAC+H
Sbjct: 357 LSACSH 362
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 80/196 (40%), Gaps = 47/196 (23%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-------QTSNI-MGDEFTIVSILT 80
F Q+P + L AMI Y + + R+A+ ++ M T+ +GD FT +L
Sbjct: 65 FAQIPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPHPSTAGFSVGDRFTYPFLLK 124
Query: 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK------------ 128
A L A LG + ++ ++ ++ N+LI+MY C D+ A+K
Sbjct: 125 ACGALAASRLGRQVHAHVARSGCESHAVVQNSLIEMYTRCGDLSTARKAFDGMREKDVVS 184
Query: 129 -------------------------DK--FSWTTMIVGLAISGNGDKALDMFSQMLRASI 161
DK SWT ++ G G+ A+++F M
Sbjct: 185 WNTLISAHARMGQMRRARELFYSMPDKTVVSWTALVSGYTAVGDFTGAVEVFRLMQMEGF 244
Query: 162 KPDEVAYVGVLSACTH 177
+PD+V+ V VL AC
Sbjct: 245 EPDDVSIVAVLPACAQ 260
>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
[Vitis vinifera]
gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
Length = 742
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 108/181 (59%), Gaps = 11/181 (6%)
Query: 6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT 65
+IS TA+ Y GQV +AR FDQM + ++W AMI GY + EA+ LFQEM +
Sbjct: 308 LISLTAM---YAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMIS 364
Query: 66 SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK 125
NI D T+ S + A A + +LDL +W+ YI+K + +ND+F ALIDM+ C V+
Sbjct: 365 KNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDL 424
Query: 126 AQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
A+ KD W+ MIVG + G G A+D+F M +A + P++V +VG+L+AC H
Sbjct: 425 AREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNH 484
Query: 178 N 178
+
Sbjct: 485 S 485
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 100/177 (56%), Gaps = 12/177 (6%)
Query: 12 IVSRYINR----GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN 67
+V++++N G++ AR+ FD+ PE LW A+I GY N F +A+ ++ MQ S
Sbjct: 105 LVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASG 164
Query: 68 IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127
+ D FT+ +L A + + L++G+ + I + ++D+F N L+ +Y C VE+A+
Sbjct: 165 VNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQAR 224
Query: 128 --------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
++ SWT+MI G +G +AL +F QM + ++KPD +A V VL A T
Sbjct: 225 IVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYT 281
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 89/180 (49%), Gaps = 8/180 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV +V+ Y G+V+ AR F+ + +R+ V WT+MI GY + EAL +F +M+
Sbjct: 203 DVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMR 262
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
N+ D +VS+L A ++ L+ G+ I + K ++ + +L MY C V
Sbjct: 263 QRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVM 322
Query: 125 KAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A+ + W MI G A +G ++A+ +F +M+ +I+ D + + AC
Sbjct: 323 VARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACA 382
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 48/77 (62%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV TA++ + G VD+AR+ FD+ ++D V+W+AMI GY R ++A+ LF M+
Sbjct: 405 DVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMK 464
Query: 65 TSNIMGDEFTIVSILTA 81
+ + ++ T V +LTA
Sbjct: 465 QAGVCPNDVTFVGLLTA 481
>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 681
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 109/185 (58%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ +SW A+++ Y+ G + A++ FDQMPER V W +MI GY R +F +AL LF
Sbjct: 237 MPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLF 296
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M +I + TI+ ++A + + +L G W+ +YI K+ K D G LI+MY C
Sbjct: 297 EVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKC 356
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
V+ A +K WT++IVGL + G ++ L++F +M R +KP + ++GVL
Sbjct: 357 GSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVL 416
Query: 173 SACTH 177
+AC+H
Sbjct: 417 NACSH 421
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 87/178 (48%), Gaps = 22/178 (12%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+++VS Y G++++ R+ FD+M ++D V W ++IDGY R AL +F+EM
Sbjct: 153 SSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMPEK--- 209
Query: 70 GDEFT---IVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126
D F+ ++ L+ L A + D+ ++N + + NA+I+ Y D A
Sbjct: 210 -DSFSWTILIDGLSKSGKLEA------ARDVFDRMPIRNSV-SWNAMINGYMKAGDSNTA 261
Query: 127 --------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
++ +W +MI G + KAL +F MLR I P+ +G +SA +
Sbjct: 262 KELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVSAAS 319
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 9/140 (6%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A FD + E V W +I Y+ R +A+ LF ++ + + D FT+ +L A
Sbjct: 68 AHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFCKL-LCDFVPDSFTLPCVLKGCAR 126
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTM 136
L AL G+ I + K D F ++L+ MY C ++E + KD SW ++
Sbjct: 127 LGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSL 186
Query: 137 IVGLAISGNGDKALDMFSQM 156
I G A G + AL+MF +M
Sbjct: 187 IDGYARCGEIELALEMFEEM 206
>gi|297745510|emb|CBI40590.3| unnamed protein product [Vitis vinifera]
Length = 495
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 114/188 (60%), Gaps = 10/188 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV +W ++++ Y G ++ A + F MP R+ WTAMI GY + ++ +AL++F
Sbjct: 143 MTVRDVPTWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMF 202
Query: 61 QEMQTSNIM-GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
M+ M +E T+ S+L A ANL AL++GE I+ Y N +++ NAL++MY
Sbjct: 203 LMMEEETEMRPNEVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYAR 262
Query: 120 CADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C ++KA +++ SW +MI+GLA+ G D+A+++F +MLR PD+V +VG
Sbjct: 263 CGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVG 322
Query: 171 VLSACTHN 178
VL ACTH
Sbjct: 323 VLLACTHG 330
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 78/195 (40%), Gaps = 40/195 (20%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81
+ A + FD +P+ L+ +I Y + +L+ +M +E + + +A
Sbjct: 32 IPYAHKLFDFIPKPTVFLYNKLIQAYSSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSA 91
Query: 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI---------------------- 119
A+L + G + T+ K+ D+FA AL+DMY
Sbjct: 92 CASLSSHQQGRMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTW 151
Query: 120 ---------CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS-I 161
C D+E A ++ SWT MI G A +G KAL MF M + +
Sbjct: 152 NSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEM 211
Query: 162 KPDEVAYVGVLSACT 176
+P+EV VL AC
Sbjct: 212 RPNEVTLASVLPACA 226
>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
Length = 690
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 71/186 (38%), Positives = 105/186 (56%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW+ +VS Y +G +++AR FD+MP ++ V WT M+ + EA LF
Sbjct: 327 MPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVGEAGRLF 386
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM+ + I D +VSIL A A L LG+ I ++ + K+ NAL+DM+C C
Sbjct: 387 TEMKEAAIELDVVAVVSILAACAESGCLALGKRIHRHVRQRKLGRSTLVCNALMDMFCKC 446
Query: 121 A---------DVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
D E +KD SW +I G A+ G+G+KAL++F+QM + PD V + V
Sbjct: 447 GCVNRADYIFDTEIVEKDSVSWNIIIGGFAMHGHGEKALNLFTQMKQQGFHPDAVTLINV 506
Query: 172 LSACTH 177
LSACTH
Sbjct: 507 LSACTH 512
Score = 93.2 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 54/178 (30%), Positives = 84/178 (47%), Gaps = 31/178 (17%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW ++ + +G+VD AR FD+MPE+D V W M+DGY + EA LF
Sbjct: 265 MTTRDVVSWNTAMAAMVRKGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEEAFELF 324
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
Q M N++ T+VS + ++ E + DK KN +
Sbjct: 325 QRMPGRNVVSWS-TVVSAYCKKGDM------EMARVIFDKMPAKNLV------------- 364
Query: 121 ADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+WT M+ A G +A +F++M A+I+ D VA V +L+AC +
Sbjct: 365 -----------TWTIMVSACAQKGLVGEAGRLFTEMKEAAIELDVVAVVSILAACAES 411
Score = 42.7 bits (99), Expect = 0.061, Method: Composition-based stats.
Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 26/166 (15%)
Query: 11 AIVSRYINRGQVDIARQCFD-QMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
A++ + G V+ A FD ++ E+D V W +I G+ +AL LF +M+
Sbjct: 438 ALMDMFCKCGCVNRADYIFDTEIVEKDSVSWNIIIGGFAMHGHGEKALNLFTQMKQQGFH 497
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
D T++++L+A ++ ++ G F N D Y I ++E
Sbjct: 498 PDAVTLINVLSACTHMGLVEEGRR--------------FFANMETD-YGIKPEIEH---- 538
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ L G +A+DM M +P+EV + +LSAC
Sbjct: 539 ---YGCMVDLLGRGGLIKEAVDMIKSM---PWEPNEVIWGSLLSAC 578
Score = 36.6 bits (83), Expect = 3.6, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 96 TYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTMIVGLAISGNGD 147
T++ K D F GNALID Y + A+K D SW T + + G D
Sbjct: 228 THVFKLGSVEDTFVGNALIDAYSKNDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRKGEVD 287
Query: 148 KALDMFSQM 156
A MF +M
Sbjct: 288 AARSMFDEM 296
>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
Length = 643
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 112/185 (60%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++SW +++S ++ G V+ A F +MP RD V W +M+ Y + + EAL LF
Sbjct: 123 MPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALF 182
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M+ + E T+VS+L+A A+L ALD G + TYI+ N+++ + G AL+DMY C
Sbjct: 183 DQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKC 242
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ A KD +W T+I G+AI G+ +A +F +M AS++P+++ +V +L
Sbjct: 243 GKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAML 302
Query: 173 SACTH 177
SAC+H
Sbjct: 303 SACSH 307
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 16/175 (9%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y N + A+Q F +RD V W AMIDGY++ +F M +
Sbjct: 40 SLIHLYANGKDLGAAKQLFSLCSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRM----VCR 95
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA---- 126
D + +I+ A + +D K D+ +N + + N+++ + C +VE+A
Sbjct: 96 DVISWNTIINGYAIVGKIDEA---KRLFDEMPERN-LVSWNSMLSGFVKCGNVEEAFGLF 151
Query: 127 ----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+D SW +M+ A G ++AL +F QM +KP E V +LSAC H
Sbjct: 152 SEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAH 206
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 10/149 (6%)
Query: 7 ISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTS 66
I TA+V Y G++ +A Q F+ M +D + W +I G +EA LF+EM+ +
Sbjct: 230 IVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEA 289
Query: 67 NIMGDEFTIVSILTARANLRALDLGEWI-----KTYIDKNKVKN-----DIFAGNALIDM 116
++ ++ T V++L+A ++ +D G+ + +Y + KV++ D+ A L++
Sbjct: 290 SVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEE 349
Query: 117 YCICADVEKAQKDKFSWTTMIVGLAISGN 145
+ + + ++ G I GN
Sbjct: 350 AMELIGTMPMEPNPSALGALLGGCRIHGN 378
>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
Length = 768
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 113/189 (59%), Gaps = 15/189 (7%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ KDV SWT++++ +I ++ AR+ FD+MP R+ V WTAMI GY++ L LF
Sbjct: 415 MEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELF 474
Query: 61 QEMQTSNIMGDEF----TIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116
QEM+ G ++ TIV++L+ A++ A DLG + Y++K + D+ NAL+DM
Sbjct: 475 QEMRAE---GKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDM 531
Query: 117 YCICADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
Y + E ++D FSWTTMI GLA+ G G AL+ FS M ++ P+EV
Sbjct: 532 YAKSGALVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXPNEVTL 591
Query: 169 VGVLSACTH 177
+ VLSAC+H
Sbjct: 592 LSVLSACSH 600
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 85/205 (41%), Gaps = 42/205 (20%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
+++ Y G A++ F+ + D V WT +I YL ++ +A ++F + S + D
Sbjct: 294 LLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPD 353
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC------------- 118
F +V ++A + + L G + + + ++ +D GNALIDMY
Sbjct: 354 SFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFK 413
Query: 119 ------------------ICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDM 152
C D+E A+ ++ SWT MI G L++
Sbjct: 414 TMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLEL 473
Query: 153 FSQMLRASIK--PDEVAYVGVLSAC 175
F +M RA K P + V VLS C
Sbjct: 474 FQEM-RAEGKDWPTVITIVAVLSGC 497
Score = 39.7 bits (91), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 129 DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
D SWT +I + KA +FS + + ++PD VG +SAC H
Sbjct: 318 DIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGH 366
>gi|56783979|dbj|BAD81434.1| pentatricopeptide (PPR) repeat-containing protein -like [Oryza
sativa Japonica Group]
Length = 503
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 110/183 (60%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ DV+SW ++ Y+ G + AR+ FD MP R+ V WT +I Y ++ + EA+ +F+
Sbjct: 139 SADVVSWNVMIDGYVKSGDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRR 198
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
MQ I D ++S+L+A +L +DLGEW+ ++ + + +I NA+IDMY C
Sbjct: 199 MQVEGIEPDGVALLSVLSACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGS 258
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
V+KA QK +WTTMI G A+ G G +A+++F +M + ++ P+++ ++ VLS
Sbjct: 259 VKKALEVFEGMEQKSIVTWTTMIAGFALHGLGLEAVELFRRMEKENVSPNDITFLAVLSV 318
Query: 175 CTH 177
C+H
Sbjct: 319 CSH 321
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
AI+ Y+ G V A + F+ M ++ V WT MI G+ EA+ LF+ M+ N+
Sbjct: 248 AIIDMYVKCGSVKKALEVFEGMEQKSIVTWTTMIAGFALHGLGLEAVELFRRMEKENVSP 307
Query: 71 DEFTIVSILTARANLRALDLGEW-IKTYIDKNKVKNDIFAGNALIDM 116
++ T +++L+ +++ DLG W KT + + K+K + +ID+
Sbjct: 308 NDITFLAVLSVCSHVGLTDLGRWYFKTMVSQYKIKPRVEHYGCMIDL 354
>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
Length = 845
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 109/186 (58%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NK +SW ++++ ++ G ++ A + F MP+ D V W MI ++ + F+EA+ LF
Sbjct: 402 MLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELF 461
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ MQ+ I D+ T+V + +A L ALDL +WI YI K + D+ G AL+DM+ C
Sbjct: 462 RVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARC 521
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
D + A ++D +WT I +A+ GNG A+++F +ML+ IKPD V +V +L
Sbjct: 522 GDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALL 581
Query: 173 SACTHN 178
+A +H
Sbjct: 582 TALSHG 587
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 101/181 (55%), Gaps = 8/181 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+D+ +++ Y G++D R+ FD+M ER+ V WT++I GY + ++EA++LF EM
Sbjct: 172 RDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEM 231
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
I + T+V +++A A L+ L LGE + T I + +++ + NAL+DMY C +
Sbjct: 232 VEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAI 291
Query: 124 EKAQK------DK--FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+KA+K DK + T++ G + L + +ML+ +PD + + +SAC
Sbjct: 292 DKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSAC 351
Query: 176 T 176
+
Sbjct: 352 S 352
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 78/154 (50%), Gaps = 8/154 (5%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+V Y+ G +D AR+ FD+ +++ VL+ ++ Y+R RE L + EM
Sbjct: 280 ALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRP 339
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA---- 126
D T++S ++A + L + G+W Y+ +N ++ NA+I+MY C E A
Sbjct: 340 DRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVF 399
Query: 127 ----QKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
K + SW ++I G +G+ + A +FS M
Sbjct: 400 DRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAM 433
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 93/189 (49%), Gaps = 16/189 (8%)
Query: 3 NKDVISWTAIVSRYINRG---QVDIARQCFDQMPERD-----YVLWTAMIDGYLRVNRFR 54
N +S T ++S G ++ A++ + E + + +++++I G+
Sbjct: 62 NHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNGIMGTHYMFSSLIRGFSACGLGY 121
Query: 55 EALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALI 114
+A+ +F+++ + D FT +L+A AL G + I K + D+F N+LI
Sbjct: 122 KAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLI 181
Query: 115 DMYCICADVE--------KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 166
Y C +++ ++++ SWT++I G A G +A+ +F +M+ I+P+ V
Sbjct: 182 HFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSV 241
Query: 167 AYVGVLSAC 175
VGV+SAC
Sbjct: 242 TMVGVISAC 250
>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
Length = 1111
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 108/180 (60%), Gaps = 8/180 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + TA+V+ G V AR+ F+ MPE+D + W AMI GY +V REAL LF MQ
Sbjct: 181 DFVCRTAMVTACARCGDVAFARKLFEGMPEKDPIAWNAMISGYAQVGESREALNLFHLMQ 240
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ + +++S+L+A L ALD G W +YI++NK+K + G L+D+Y C D++
Sbjct: 241 LEGVKVNGVSMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLGTTLVDLYAKCGDMD 300
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
KA +K+ ++W++ + GLA++G G+K L +FS M + + P+ V +V VL C+
Sbjct: 301 KAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLKLFSLMKQDGVTPNAVTFVSVLRGCS 360
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 77/176 (43%), Gaps = 8/176 (4%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+++ Y G + + + F+ + ++ V W MI +L+ E L F + +
Sbjct: 677 ALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKP 736
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--- 127
D+ T +++L ++ + L + I I + AL+D+Y +E +
Sbjct: 737 DQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVF 796
Query: 128 -----KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
D +WT M+ A G G A+ F M+ + PD V + +L+AC+H+
Sbjct: 797 LEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHS 852
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFQEMQTSNI 68
T +V Y G +D A + F M E++ W++ ++G L +N F E L LF M+ +
Sbjct: 287 TTLVDLYAKCGDMDKAMEVFWGMEEKNVYTWSSALNG-LAMNGFGEKCLKLFSLMKQDGV 345
Query: 69 MGDEFTIVSILTARANLRALDLGE-WIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126
+ T VS+L + + +D G+ + ++ ++ + L+D+Y +E A
Sbjct: 346 TPNAVTFVSVLRGCSVVGFVDEGQKHFDSMRNEFGIEPQLDHYGCLVDLYARAGRLEDA 404
Score = 36.2 bits (82), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 42/91 (46%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N + TA++ Y G+++ + F ++ D + WTAM+ Y R+A+ F+
Sbjct: 770 NANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFEL 829
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEW 93
M + D T +L A ++ ++ G +
Sbjct: 830 MVHYGLSPDHVTFTHLLNACSHSGLVEEGRY 860
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 103/178 (57%), Gaps = 10/178 (5%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y GQV+ A F+ + +D V W +I GY +N ++EAL LFQEM S
Sbjct: 238 ALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESP 297
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDK--NKVKNDIFAGNALIDMYCICADVEKA-- 126
++ TIVSIL A A+L A+D+G WI YIDK V N +LIDMY C D+E A
Sbjct: 298 NDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQ 357
Query: 127 ------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
K SW MI G A+ G + D+FS+M + I+PD++ +VG+LSAC+H+
Sbjct: 358 VFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHS 415
Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 111/183 (60%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++DV+S+TA+++ Y + G + A++ FD++P +D V W AMI GY ++EAL LF+E
Sbjct: 129 HRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKE 188
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M +N+ DE T+V++L+A A R+++LG + ++ID + +++ NALID+Y C
Sbjct: 189 MMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQ 248
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
VE A KD SW T+I G +AL +F +MLR+ P++V V +L A
Sbjct: 249 VETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPA 308
Query: 175 CTH 177
C H
Sbjct: 309 CAH 311
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 39/189 (20%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88
F + E + ++W M+ GY + AL L+ M + ++ + +T +L + A +A
Sbjct: 23 FATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKAF 82
Query: 89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK-------------------- 128
+ G+ I ++ K + D++ +LI MY +E A K
Sbjct: 83 EEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGY 142
Query: 129 -------------------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
D SW MI G A +G+ +AL++F +M++ +++PDE V
Sbjct: 143 ASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMV 202
Query: 170 GVLSACTHN 178
VLSAC +
Sbjct: 203 TVLSACAQS 211
>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 586
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 69/184 (37%), Positives = 105/184 (57%), Gaps = 11/184 (5%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+SW +VS Y G + AR+ F +MPER+ V W+AM+D +R F EAL +F M
Sbjct: 144 DVVSWNTMVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMM 203
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV---KNDIFAGNALIDMYCICA 121
D +VS+L A A+L A++ G W+ Y++ + ++ AL+DMYC C
Sbjct: 204 REEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCG 263
Query: 122 DVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+E A ++D W MI GLA++G G++AL++F +ML+ P+E ++ VL
Sbjct: 264 CMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLC 323
Query: 174 ACTH 177
ACTH
Sbjct: 324 ACTH 327
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFQEMQTSNI 68
TA+V Y G ++ A Q FD + RD VLW AMI G L +N + E AL LF+ M
Sbjct: 253 TALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGG-LAMNGYGERALELFRRMLQKGF 311
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127
M +E T +++L A + +D G+ + + +K L D+ +VE+A+
Sbjct: 312 MPNESTFIAVLCACTHTGRVDEGKRVFKSMQDYGIKPQREHYGCLADLLGRAGNVEEAE 370
>gi|125539857|gb|EAY86252.1| hypothetical protein OsI_07623 [Oryza sativa Indica Group]
Length = 629
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 69/184 (37%), Positives = 105/184 (57%), Gaps = 11/184 (5%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+SW +VS Y G + AR+ F +MPER+ V W+AM+D +R F EAL +F M
Sbjct: 144 DVVSWNTMVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMM 203
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV---KNDIFAGNALIDMYCICA 121
D +VS+L A A+L A++ G W+ Y++ + ++ AL+DMYC C
Sbjct: 204 REEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCG 263
Query: 122 DVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+E A ++D W MI GLA++G G++AL++F +ML+ P+E ++ VL
Sbjct: 264 CMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLC 323
Query: 174 ACTH 177
ACTH
Sbjct: 324 ACTH 327
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFQEMQTSNI 68
TA+V Y G ++ A Q FD + RD VLW AMI G L +N + E AL LF+ M
Sbjct: 253 TALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGG-LAMNGYGERALELFRRMLQKGF 311
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127
M +E T +++L A + +D G+ + + +K L D+ +VE+A+
Sbjct: 312 MPNESTFIAVLCACTHTGRVDEGKRVFKSMQDYGIKPQREHYGCLADLLGRAGNVEEAE 370
>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
Length = 687
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 71/186 (38%), Positives = 104/186 (55%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW+ +VS Y +G +++AR FD+MP ++ V WT M+ + EA LF
Sbjct: 324 MPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLF 383
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM + I D +VSIL A A +L LG+ I ++ + K+ NAL+DM+C C
Sbjct: 384 TEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKC 443
Query: 121 A---------DVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
D E +KD SW +I G A+ G G+KAL++F+QM + PD V + V
Sbjct: 444 GCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINV 503
Query: 172 LSACTH 177
LSACTH
Sbjct: 504 LSACTH 509
Score = 92.8 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 31/178 (17%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW ++ + +G+VD AR FD+MPE+D V W M+DGY + +A LF
Sbjct: 262 MTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELF 321
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
Q M N++ T+VS + ++ E + DK KN +
Sbjct: 322 QRMPGRNVVSWS-TVVSAYCKKGDM------EMARVIFDKMPAKNLV------------- 361
Query: 121 ADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+WT M+ A G ++A +F++M+ A+I+ D +A V +L+AC +
Sbjct: 362 -----------TWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAES 408
Score = 41.6 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 26/166 (15%)
Query: 11 AIVSRYINRGQVDIARQCFD-QMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
A++ + G V+ A FD ++ E+D V W +I G+ +AL LF +M+
Sbjct: 435 ALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFH 494
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
D T++++L+A ++ ++ G F N D Y I +E
Sbjct: 495 PDAVTLINVLSACTHMGLVEEGRR--------------FFANMETD-YGIKPQIEH---- 535
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ L G +A+DM +M +P+EV + +LSAC
Sbjct: 536 ---YGCMVDLLGRGGLIKEAVDMIKRM---PWEPNEVIWGSLLSAC 575
>gi|255578276|ref|XP_002530005.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530484|gb|EEF32367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 499
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 109/181 (60%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+SW+ +V ++ G++++ARQ FD MPE+D V WTAM+ GY + N REAL LF EM
Sbjct: 187 DVVSWSGLVLAHVRGGELELARQVFDDMPEKDVVSWTAMVSGYSKANCSREALELFWEMS 246
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ I DE TIVS+++A NL ++ G + +YI++N + NALI+MY C V+
Sbjct: 247 DAGIRPDEVTIVSVISACTNLGDVETGMNVHSYINENGFGWMVSLCNALINMYAKCGCVD 306
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+A +K +W +MI A G + A ++FS ML + I PD + ++ +L A T
Sbjct: 307 RAWRVFNNMKRKSLITWNSMISACANHGYAEDAFELFSCMLNSGIAPDGITFLALLIAYT 366
Query: 177 H 177
H
Sbjct: 367 H 367
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 89/203 (43%), Gaps = 47/203 (23%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G + A++ FDQMP+ + + +I GY + + + LF +M+ +++ DEFT ++
Sbjct: 64 GDLPYAQRLFDQMPQPNTFFYNTIIRGYAKSSSPSYCVNLFNQMRQNHVDPDEFTFNFLI 123
Query: 80 TARANLR-------ALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA------ 126
AR+ + L+ E I + K + +F NALI++Y + A
Sbjct: 124 KARSRVHKVHNFPSTLECDE-IHGAVFKYGFCSHLFVQNALINLYAVKGSPAAAWRVFNE 182
Query: 127 ---------------------------------QKDKFSWTTMIVGLAISGNGDKALDMF 153
+KD SWT M+ G + + +AL++F
Sbjct: 183 TVGVDVVSWSGLVLAHVRGGELELARQVFDDMPEKDVVSWTAMVSGYSKANCSREALELF 242
Query: 154 SQMLRASIKPDEVAYVGVLSACT 176
+M A I+PDEV V V+SACT
Sbjct: 243 WEMSDAGIRPDEVTIVSVISACT 265
>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
gi|194696634|gb|ACF82401.1| unknown [Zea mays]
Length = 615
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 71/186 (38%), Positives = 104/186 (55%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW+ +VS Y +G +++AR FD+MP ++ V WT M+ + EA LF
Sbjct: 252 MPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLF 311
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM + I D +VSIL A A +L LG+ I ++ + K+ NAL+DM+C C
Sbjct: 312 TEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKC 371
Query: 121 A---------DVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
D E +KD SW +I G A+ G G+KAL++F+QM + PD V + V
Sbjct: 372 GCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINV 431
Query: 172 LSACTH 177
LSACTH
Sbjct: 432 LSACTH 437
Score = 92.8 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 31/178 (17%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW ++ + +G+VD AR FD+MPE+D V W M+DGY + +A LF
Sbjct: 190 MTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELF 249
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
Q M N++ T+VS + ++ E + DK KN +
Sbjct: 250 QRMPGRNVVSWS-TVVSAYCKKGDM------EMARVIFDKMPAKNLV------------- 289
Query: 121 ADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+WT M+ A G ++A +F++M+ A+I+ D +A V +L+AC +
Sbjct: 290 -----------TWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAES 336
Score = 41.6 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 26/166 (15%)
Query: 11 AIVSRYINRGQVDIARQCFD-QMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
A++ + G V+ A FD ++ E+D V W +I G+ +AL LF +M+
Sbjct: 363 ALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFH 422
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
D T++++L+A ++ ++ G F N D Y I +E
Sbjct: 423 PDAVTLINVLSACTHMGLVEEGRR--------------FFANMETD-YGIKPQIEH---- 463
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ L G +A+DM +M +P+EV + +LSAC
Sbjct: 464 ---YGCMVDLLGRGGLIKEAVDMIKRM---PWEPNEVIWGSLLSAC 503
>gi|357477477|ref|XP_003609024.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510079|gb|AES91221.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 544
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 107/188 (56%), Gaps = 11/188 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K VISW +++RYI G V AR+ F MPER+ V W +MI G + V + AL LF
Sbjct: 218 MPCKTVISWNTLIARYIRLGDVQAARRVFGCMPERNAVSWNSMIAGCVSVRDYAGALELF 277
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EMQ + + E T++SIL A A AL++G I + + K + + GNAL++MYC C
Sbjct: 278 SEMQNAGVKPTEVTLISILGACAETGALEIGHKIYESLKVCEHKIESYLGNALVNMYCKC 337
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQM---LRASIKPDEVAYV 169
++ A K W M++GLA+ G ++ +F++M L SI+PD V ++
Sbjct: 338 GNLSLAWEIFNGMKMKTVSCWNAMVIGLAVHGYCEEVFQLFTEMEESLGGSIRPDRVTFI 397
Query: 170 GVLSACTH 177
GVL AC+H
Sbjct: 398 GVLVACSH 405
>gi|356560406|ref|XP_003548483.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26630,
chloroplastic-like [Glycine max]
Length = 483
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 113/186 (60%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ ++V +WT ++S + G++D AR+ F+QMP ++ V WTAMIDGY++ + EA LF
Sbjct: 184 MRVRNVFAWTTVISGLVACGKLDTARELFEQMPSKNVVSWTAMIDGYVKHKQPIEAFNLF 243
Query: 61 QEM-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+ M Q N+ +E+T+VS++ A + +L LG + + KN + + F G ALIDMY
Sbjct: 244 ERMQQVDNVRPNEYTLVSLVRACTEMGSLKLGRRVHDFALKNGFELEPFLGTALIDMYSK 303
Query: 120 CADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C ++ A+ + +W TMI L + G D+AL +F +M +A+ PD + +VGV
Sbjct: 304 CGYLDDARTVFDMMQVRTLATWNTMITSLGVHGYRDEALSLFDEMEKANEVPDAITFVGV 363
Query: 172 LSACTH 177
LSAC +
Sbjct: 364 LSACVY 369
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 8/145 (5%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G++ A FDQ+ D W MI + + AL LF+ M D+FT ++
Sbjct: 71 GKMKYATLVFDQLNAPDVFTWNVMIRAFTIGGSPKMALLLFKAMLCQGFAPDKFTYPFVI 130
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--DK------F 131
A ALDLG K D++ N ++++Y C +V+ +K DK F
Sbjct: 131 NACMASSALDLGIVAHALAIKMGFWGDLYVQNTMMNLYFKCENVDDGRKVFDKMRVRNVF 190
Query: 132 SWTTMIVGLAISGNGDKALDMFSQM 156
+WTT+I GL G D A ++F QM
Sbjct: 191 AWTTVISGLVACGKLDTARELFEQM 215
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFR-EALTLFQEMQTSNI 68
TA++ Y G +D AR FD M R W MI L V+ +R EAL+LF EM+ +N
Sbjct: 295 TALIDMYSKCGYLDDARTVFDMMQVRTLATWNTMITS-LGVHGYRDEALSLFDEMEKANE 353
Query: 69 MGDEFTIVSILTARANLRALDLGE 92
+ D T V +L+A + L+L +
Sbjct: 354 VPDAITFVGVLSACVYMNDLELAQ 377
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 128 KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
D F+W MI I G+ AL +F ML PD+ Y V++AC
Sbjct: 86 PDVFTWNVMIRAFTIGGSPKMALLLFKAMLCQGFAPDKFTYPFVINAC 133
>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
Length = 604
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 71/187 (37%), Positives = 114/187 (60%), Gaps = 22/187 (11%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M N+DV+SW ++++ Y+ G++++A + FD+MPERD V AMIDGY +
Sbjct: 170 MPNRDVVSWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGK----------- 218
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVK-NDIFAGNALIDMYCI 119
EM + + D IVS+L+A A+L ++ G+W+ Y+ NK++ + F G+ALIDMY
Sbjct: 219 -EMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSK 277
Query: 120 CADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C +E A +++ W +MI GLAI G +ALD+F +M R I+P+E+ ++G
Sbjct: 278 CGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLG 337
Query: 171 VLSACTH 177
+LS C+H
Sbjct: 338 LLSTCSH 344
Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 29/184 (15%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT--SNIMGDEFTIVS 77
G +D A F ++ + ++ A+I G+ + E+L L+ M + + G EF+I S
Sbjct: 55 GGLDYASSVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPS 114
Query: 78 ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KD 129
+L A L A D G + + K + D F GN+++ MY ++E A+ +D
Sbjct: 115 VLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRD 174
Query: 130 KFSWTTMIVGLAISGNGDKALDMF-------------------SQMLRASIKPDEVAYVG 170
SW +MI G +G + A ++F +ML ++PD A V
Sbjct: 175 VVSWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGKEMLSLGLRPDGPAIVS 234
Query: 171 VLSA 174
VLSA
Sbjct: 235 VLSA 238
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 64/139 (46%), Gaps = 11/139 (7%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVL-WTAMIDGYLRVNRFREALTLFQEMQTSNI 68
+A++ Y G ++ A F + R + W +MI G REAL +F EM+ +I
Sbjct: 269 SALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDI 328
Query: 69 MGDEFTIVSILTARANLRALDLGE-WIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA- 126
+E T + +L+ ++ ++ G+ + ++ +K K+ I +ID++ +E A
Sbjct: 329 EPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDAL 388
Query: 127 --------QKDKFSWTTMI 137
+ D +W ++
Sbjct: 389 GVIQNMPFEADLLAWKAIL 407
>gi|255575758|ref|XP_002528778.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531781|gb|EEF33600.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 518
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 111/186 (59%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++DV+SW ++ Y V +AR F+QMP R+ V W M+ YL+ + E L LF
Sbjct: 279 MPSRDVVSWNCMIDGYAKIRNVSVARWLFNQMPFRNIVSWNIMLALYLKCKNYGECLKLF 338
Query: 61 QEM-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
M + + ++ +++S+LTA AN R LDLG+WI +YI N+V++D AL+ MY
Sbjct: 339 DRMIEERELRPNKASLMSVLTACANFRRLDLGKWIHSYIKDNEVESDELLSTALLTMYAK 398
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C ++ A K SW +MI+G AI+G+ +KAL+ F +M ++S+ P+ +V V
Sbjct: 399 CGMMDFARHIFTKMPHKSVVSWNSMIMGYAINGHAEKALETFLEMEKSSMMPNAATFVSV 458
Query: 172 LSACTH 177
LSAC+H
Sbjct: 459 LSACSH 464
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 79/174 (45%), Gaps = 32/174 (18%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D++SW +++ Y+ G + +AR+ FD+MPERD W +MI GY+ A LF M
Sbjct: 221 DLVSWNSMIIGYVKNGDIGLARELFDEMPERDAFSWNSMISGYVGAGDVEAAKKLFDNMP 280
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ +++ + ++ A +R + + W+ ++ +N +
Sbjct: 281 SRDVV----SWNCMIDGYAKIRNVSVARWL---FNQMPFRNIV----------------- 316
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVAYVGVLSACTH 177
SW M+ N + L +F +M+ ++P++ + + VL+AC +
Sbjct: 317 -------SWNIMLALYLKCKNYGECLKLFDRMIEERELRPNKASLMSVLTACAN 363
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 7/111 (6%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+++ Y G +D AR F +MP + V W +MI GY +AL F EM+ S++M
Sbjct: 390 TALLTMYAKCGMMDFARHIFTKMPHKSVVSWNSMIMGYAINGHAEKALETFLEMEKSSMM 449
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYID----KNKVKNDIFAGNALIDM 116
+ T VS+L+A ++ L G W Y D K K++ + ++D+
Sbjct: 450 PNAATFVSVLSACSHAELLLEGWW---YFDLMQRKYKIEPKVEHCGCMVDL 497
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 62/138 (44%), Gaps = 10/138 (7%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNR--FREALTLFQEMQTSNIMGDEFTIVSILTARANLR 86
+D + + D + +I ++ +N F + +M ++ + +T ++ A++
Sbjct: 111 YDYIEQPDAFICNTIIRCFVSLNNDPFGALRFYYDKMIAKWVLPNRYTFPLLVKVCADIG 170
Query: 87 ALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIV 138
+L G+ + K + D + N+L+ MY C V A+ D SW +MI+
Sbjct: 171 SLKEGQKAHACVVKFGFEFDAYVRNSLLHMYSACGRVLDARLLFESGFVLDLVSWNSMII 230
Query: 139 GLAISGNGDKALDMFSQM 156
G +G+ A ++F +M
Sbjct: 231 GYVKNGDIGLARELFDEM 248
>gi|347954494|gb|AEP33747.1| chloroplast biogenesis 19, partial [Brassica oleracea]
Length = 485
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 110/185 (59%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+++K+ ++W ++ Y+ G+VD A + FD+MPERD + WTAMI+G+++ EAL F
Sbjct: 124 VEDKNSVTWNTMIDGYMRSGRVDDAAKVFDEMPERDLISWTAMINGFVKKGLHEEALAWF 183
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ S + D +++ L A ANL AL G W+ ++ KN++ N+LID+YC C
Sbjct: 184 REMQVSGVKPDYVAVIAALAACANLGALSFGLWVHRFVVSQDFKNNVRVSNSLIDLYCRC 243
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VE A ++ SW ++IVG A +G+ ++L F +M KPD V + G L
Sbjct: 244 GCVEFARQVFDEMEKRTVVSWNSVIVGFAANGHAHESLVYFRRMQEERFKPDAVTFTGAL 303
Query: 173 SACTH 177
+AC+H
Sbjct: 304 TACSH 308
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 28/170 (16%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y G V+ ARQ FD+M +R V W ++I G+ E+L F+ MQ
Sbjct: 235 SLIDLYCRCGCVEFARQVFDEMEKRTVVSWNSVIVGFAANGHAHESLVYFRRMQEERFKP 294
Query: 71 DEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
D T LTA +++ ++ G + + ++ I L+D+Y
Sbjct: 295 DAVTFTGALTACSHVGLVEEGVRYFEAMKRDYRISPRIEHYGCLVDLY------------ 342
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC-THN 178
+ +G ++AL + M +KP+EV +L+AC TH
Sbjct: 343 -----------SRAGRLEEALKVVESM---PMKPNEVVIGSLLAACRTHG 378
>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
Length = 771
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 104/176 (59%), Gaps = 8/176 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y + AR FD RD ++WTAM+ Y + N +A LF +M+TS +
Sbjct: 337 TALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVR 396
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD------- 122
+ TIVS+L+ A ALDLG+W+ +YIDK +V+ D AL+DMY C D
Sbjct: 397 PTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRL 456
Query: 123 -VEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+E +D W +I G A+ G G++ALD+F++M R +KP+++ ++G+L AC+H
Sbjct: 457 FIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSH 512
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 96/182 (52%), Gaps = 8/182 (4%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
++ V + TA++ Y G + +ARQ F+ + ++ V WTAMI G +R NR E LF
Sbjct: 228 EHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFI 287
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
MQ NI +E T++S++ AL LG+ + YI +N + AL+DMY C+
Sbjct: 288 RMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCS 347
Query: 122 DVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
D+ A+ +D WT M+ A + D+A ++F QM + ++P +V V +LS
Sbjct: 348 DIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLS 407
Query: 174 AC 175
C
Sbjct: 408 LC 409
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 10/183 (5%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++DV A++ Y V+ AR FD+M ERD V W+ MI R F AL L +E
Sbjct: 126 DRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIRE 185
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYI--DKNKVKNDIFAGNALIDMYCIC 120
M + E +VS++ A+ + +G+ + Y+ + N + AL+DMY C
Sbjct: 186 MNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKC 245
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ A QK SWT MI G S ++ +F +M +I P+E+ + ++
Sbjct: 246 GHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLI 305
Query: 173 SAC 175
C
Sbjct: 306 VEC 308
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 8/109 (7%)
Query: 73 FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA------ 126
F S+L A + LG+ I ++ K + D+F GNAL+ MY CA VE A
Sbjct: 95 FMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDK 154
Query: 127 --QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
++D SW+TMI L+ + D AL++ +M ++P EVA V +++
Sbjct: 155 MMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVN 203
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 75/171 (43%), Gaps = 25/171 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D I TA+V Y G ++ A + F + RD +W A+I G+ EAL +F EM+
Sbjct: 433 DCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEME 492
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ ++ T + +L A ++ + G K +K ++ + + +E
Sbjct: 493 RQGVKPNDITFIGLLHACSHAGLVTEG---KKLFEK------------MVHTFGLVPQIE 537
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ L +G D+A +M M IKP+ + + +++AC
Sbjct: 538 H-------YGCMVDLLGRAGLLDEAHEMIKSM---PIKPNTIVWGALVAAC 578
>gi|357119066|ref|XP_003561267.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 588
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 109/185 (58%), Gaps = 9/185 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
KDV+SWTA++S Y G +D+A++ FDQMP ++ V W AMI GY +R+ EAL FQ
Sbjct: 262 QKDVVSWTAMISAYAKIGNLDLAKELFDQMPVKNLVSWNAMITGYNHNSRYDEALRTFQL 321
Query: 63 MQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
M DE T+VS+++A A L + + W+ ++I KN + GNALIDM+ C
Sbjct: 322 MMLEGRFRPDEATLVSVVSACAQLGSAEYCSWVSSFIRKNNNDLTVALGNALIDMFAKCG 381
Query: 122 DVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
DV +AQ + +WTTMI GL +G +AL +++ M R + D+ ++ VL+
Sbjct: 382 DVGRAQLIFSGMKSRCVITWTTMISGLGFNGQCREALLVYNDMCREGVGLDDTVFIAVLA 441
Query: 174 ACTHN 178
AC+H
Sbjct: 442 ACSHG 446
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 84/186 (45%), Gaps = 17/186 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDVISW +IV Y++ G V A + F+ MPER+ V W ++ + RV A +F
Sbjct: 167 MIEKDVISWNSIVGVYMSSGDVKGAMELFEVMPERNVVSWNTVVASFARVGDMASAQAVF 226
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M T N + ++S A ++ A I + D+ + A+I Y
Sbjct: 227 DRMPTRNAISWNL-MISGYAAGGDVEA-------ARSIFYQTDQKDVVSWTAMISAYAKI 278
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFS-QMLRASIKPDEVAYVGV 171
+++ A+ K+ SW MI G + D+AL F ML +PDE V V
Sbjct: 279 GNLDLAKELFDQMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSV 338
Query: 172 LSACTH 177
+SAC
Sbjct: 339 VSACAQ 344
Score = 42.7 bits (99), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 11/120 (9%)
Query: 48 LRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDI 107
LR +ALT + M+ + + FT +L A R L L I I K D+
Sbjct: 79 LRGRGPEDALTAYTAMRAVEVPPNGFTFTFLLRACEFSRILPLCRRIHGQILKCGFGRDV 138
Query: 108 FAGNALIDMYCICADV-----------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
NAL+D+Y C++ E +KD SW +++ SG+ A+++F M
Sbjct: 139 VVQNALLDVYHKCSNPGYVGDARQVFDEMIEKDVISWNSIVGVYMSSGDVKGAMELFEVM 198
>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
Length = 621
Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats.
Identities = 69/192 (35%), Positives = 112/192 (58%), Gaps = 26/192 (13%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYV------------------LWTAMIDGYLRVNRF 53
++ Y G + AR+ FD+MPERD V WTAMIDG +R
Sbjct: 171 LIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGES 230
Query: 54 REALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNAL 113
AL +F+ MQ ++M +E TIV +L+A + L AL LG W+++Y+DK++++ + F G AL
Sbjct: 231 NRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGAL 290
Query: 114 IDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165
I+MY C D+++AQ K+ ++ +MI+G A+ G +A+++F +++ P
Sbjct: 291 INMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSS 350
Query: 166 VAYVGVLSACTH 177
V +VGVL+AC+H
Sbjct: 351 VTFVGVLNACSH 362
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 26/185 (14%)
Query: 18 NRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVS 77
N + A + F + L+TA+IDG + + + + L+ +M S+++ D + + S
Sbjct: 76 NLNSIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTS 135
Query: 78 ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ---------- 127
+L A AL G + + + K + ++ LI++Y C E A+
Sbjct: 136 VLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERD 195
Query: 128 ----------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
KD WT MI GL +G ++AL++F M R + P+EV V V
Sbjct: 196 VVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCV 255
Query: 172 LSACT 176
LSAC+
Sbjct: 256 LSACS 260
Score = 41.2 bits (95), Expect = 0.18, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 43/81 (53%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+++ Y G +D A++ F+QM E++ + + +MI G+ + EA+ LF+ +
Sbjct: 289 ALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTP 348
Query: 71 DEFTIVSILTARANLRALDLG 91
T V +L A ++ +LG
Sbjct: 349 SSVTFVGVLNACSHGGLAELG 369
>gi|356532311|ref|XP_003534717.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Glycine max]
Length = 755
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 105/182 (57%), Gaps = 8/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV + ++V+ Y G +D + FD M RD V W AM+ GY + EAL LF EM+
Sbjct: 395 DVATQNSLVTMYAKCGHLDQSSIVFDMMNRRDLVSWNAMVTGYAQNGYVCEALFLFNEMR 454
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ N D TIVS+L A+ L LG+WI +++ +N ++ I +L+DMYC C D++
Sbjct: 455 SDNQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCKCGDLD 514
Query: 125 KAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
AQ+ D SW+ +IVG G G+ AL +S+ L + +KP+ V ++ VLS+C+
Sbjct: 515 TAQRCFNQMPSHDLVSWSAIIVGYGYHGKGEAALRFYSKFLESGMKPNHVIFLSVLSSCS 574
Query: 177 HN 178
HN
Sbjct: 575 HN 576
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 97/174 (55%), Gaps = 8/174 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T+++ Y+ G++DIA + F++ ++D VLWTAMI G ++ +AL +F++M +
Sbjct: 299 TSLIVVYLKGGKIDIAFRMFERSSDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVK 358
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
T+ S++TA A L + +LG I YI + ++ D+ N+L+ MY C ++++
Sbjct: 359 PSTATMASVITACAQLGSYNLGTSILGYILRQELPLDVATQNSLVTMYAKCGHLDQSSIV 418
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
++D SW M+ G A +G +AL +F++M + PD + V +L C
Sbjct: 419 FDMMNRRDLVSWNAMVTGYAQNGYVCEALFLFNEMRSDNQTPDSITIVSLLQGC 472
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 81/173 (46%), Gaps = 8/173 (4%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
++++ Y G ++ +R+ FD M RD V W ++I Y ++ E L L + M+
Sbjct: 199 SMLNVYGKCGNIEYSRKLFDYMDHRDLVSWNSLISAYAQIGNICEVLLLLKTMRLQGFEA 258
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA---- 126
T S+L+ A+ L LG + I + D +LI +Y ++ A
Sbjct: 259 GPQTFGSVLSVAASRGELKLGRCLHGQILRAGFYLDAHVETSLIVVYLKGGKIDIAFRMF 318
Query: 127 ----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
KD WT MI GL +G+ DKAL +F QML+ +KP V++AC
Sbjct: 319 ERSSDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKPSTATMASVITAC 371
Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 17/175 (9%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+++++ Y G D+AR+ FD MPER+ V WT +I Y R R EA +LF EM+ I
Sbjct: 100 SSLINFYAKFGFADVARKVFDYMPERNVVPWTTIIGCYSRTGRVPEAFSLFDEMRRQGIQ 159
Query: 70 GDEFTIVSIL---TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126
T++S+L + A+++ L + ++ +DI N+++++Y C ++E +
Sbjct: 160 PSSVTVLSLLFGVSELAHVQCLHGCAILYGFM------SDINLSNSMLNVYGKCGNIEYS 213
Query: 127 QK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+K D SW ++I A GN + L + M + + VLS
Sbjct: 214 RKLFDYMDHRDLVSWNSLISAYAQIGNICEVLLLLKTMRLQGFEAGPQTFGSVLS 268
>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 618
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 115/181 (63%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
++I TA++ Y+ G VD R FD M RD V W+AMI GY + R EAL LF+ M+
Sbjct: 262 NMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMK 321
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
++ I ++ T+VS+L+A A L +++ GE I +Y++ + ++++ +AL+ MY C ++
Sbjct: 322 SAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNII 381
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
KA Q+D +W +MI+GLAI+G + A+ ++++M +KP+ + +VG+++ACT
Sbjct: 382 KARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACT 441
Query: 177 H 177
H
Sbjct: 442 H 442
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 99/182 (54%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD I++ ++S Y G+V AR+ FD+M +R V W AMI Y + + + +FQ M
Sbjct: 160 KDTIAYNCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRM 219
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
Q +E T+ ++L+ A L L++G IK D + +++ A+++MY C V
Sbjct: 220 QDEMCEPNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAV 279
Query: 124 EK--------AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ A++D +W+ MI G A +G ++AL++F M A IKP++V V VLSAC
Sbjct: 280 DDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSAC 339
Query: 176 TH 177
Sbjct: 340 AQ 341
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 8/157 (5%)
Query: 13 VSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDE 72
+ R +N + ARQ FDQ+P D + + I Y R++ EAL F M +N+
Sbjct: 37 IRRLLNASFIQYARQVFDQIPHPDQGVHCSFITAYSRLSLNNEALRTFVSMHQNNVRIVC 96
Query: 73 FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----- 127
FTI I + A+L A+D+G+ + + + + + +F NALI+ Y D+ A+
Sbjct: 97 FTIPPIFKSCASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDG 156
Query: 128 ---KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI 161
KD ++ +I + SG A ++F +M SI
Sbjct: 157 ILVKDTIAYNCLISAYSRSGEVLAARELFDKMRDRSI 193
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFQEMQTSNI 68
+A++ Y G + ARQ FD++P+RD V W +MI G L +N F E A+ L+ M+ +
Sbjct: 368 SALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMG-LAINGFAEDAIALYNRMKEIEV 426
Query: 69 MGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYC 118
+ T V ++TA + ++LG E+ ++ + + +I ++D++C
Sbjct: 427 KPNNITFVGLMTACTHAGHVELGLEFFRSMRSDHNISPNIEHFACIVDLFC 477
>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Glycine max]
Length = 617
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 110/187 (58%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DVISWT ++ Y G + AR FD +P +D V WTAM+ GY + +AL +F
Sbjct: 171 MPERDVISWTGLIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVF 230
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN--KVKNDIFAGNALIDMYC 118
+ ++ + DE T+V +++A A L A WI+ + + V +++ G+ALIDMY
Sbjct: 231 RRLRDEGVEIDEVTLVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYS 290
Query: 119 ICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C +VE+A +++ FS+++MIVG AI G A+ +F ML +KP+ V +VG
Sbjct: 291 KCGNVEEAYDVFKGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVG 350
Query: 171 VLSACTH 177
VL+AC+H
Sbjct: 351 VLTACSH 357
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 76/193 (39%), Gaps = 40/193 (20%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
R F Q+ + WTA+I Y +AL+ + M+ + FT ++ +A A
Sbjct: 62 PRLLFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAA 121
Query: 85 LRALDLGEWIKTY-IDKNKVKNDIFAGNALIDMYCICADVEKAQ---------------- 127
+R LG + + +D++ NA+IDMY C + A+
Sbjct: 122 VRHSALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTG 181
Query: 128 -----------------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 164
KD +WT M+ G A + AL++F ++ ++ D
Sbjct: 182 LIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEID 241
Query: 165 EVAYVGVLSACTH 177
EV VGV+SAC
Sbjct: 242 EVTLVGVISACAQ 254
>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 649
Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 109/186 (58%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ D +SW +++ Y G++DIA F +M E++ + WT MI GY++ +EAL LF
Sbjct: 205 IPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLF 264
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EMQ S++ D ++ + L+A A L AL+ G+WI +Y+ K +++ D G LIDMY C
Sbjct: 265 HEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKC 324
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
D+ +A +K +WT +I G A G+G +A+ F +M + IKP+ + + VL
Sbjct: 325 GDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVL 384
Query: 173 SACTHN 178
+AC++
Sbjct: 385 TACSYT 390
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 78/186 (41%), Gaps = 39/186 (20%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88
FD D LW MI G+ + +L L+Q M + + +T S+L A +NL AL
Sbjct: 101 FDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSAL 160
Query: 89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA---------------------- 126
+ I I K +ND++A N+LI+ Y + + A
Sbjct: 161 EETTQIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGY 220
Query: 127 -----------------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
+K+ SWTTMI G +G +AL +F +M + ++PD V+
Sbjct: 221 AKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLA 280
Query: 170 GVLSAC 175
LSAC
Sbjct: 281 NALSAC 286
Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 71/171 (41%), Gaps = 25/171 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + ++ Y G + A + F + + WTA+I GY REA++ F EMQ
Sbjct: 310 DSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQ 369
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
I + T ++LTA + ++ G+ I ++++ + I+ Y D+
Sbjct: 370 KMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERD------YNLKPTIEHYGCVVDL- 422
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
L+ +G D+A +M +KP+ V + +L AC
Sbjct: 423 ---------------LSRAGLLDEAKRFIQEM---PLKPNAVIWGALLKAC 455
>gi|354805230|gb|AER41645.1| CRR4 [Oryza punctata]
Length = 632
Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 108/187 (57%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+SWTA+VS Y G +D A++ FD MP ++ V W AMI GY +R+ EAL F
Sbjct: 269 MDQKDVVSWTAMVSAYAKIGDLDTAKELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTF 328
Query: 61 QEMQTSN-IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
Q M DE T+VS+++A A L +++ WI ++I K+ + GNALIDM+
Sbjct: 329 QLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNTHLTVALGNALIDMFAK 388
Query: 120 CADVEKAQKDKF--------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C DV +AQ + +WTTMI G A +G +AL +++ M R ++ D ++
Sbjct: 389 CGDVGRAQSIFYKMETRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDGTVFIAA 448
Query: 172 LSACTHN 178
L+ACTH
Sbjct: 449 LAACTHG 455
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 86/186 (46%), Gaps = 17/186 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +KDV+SW +IV Y++ G A F+ MPER+ V W ++ G+ R A T+F
Sbjct: 176 MVDKDVVSWNSIVGVYMSSGDATGAMGLFEAMPERNVVSWNTVVAGFARTGDMVTARTVF 235
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M + N + I T+ D+ E ++ D+ K D+ + A++ Y
Sbjct: 236 DRMPSRNAVSWNLMISGYATSG------DV-EAARSVFDRMDQK-DVVSWTAMVSAYAKI 287
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFS-QMLRASIKPDEVAYVGV 171
D++ A+ K+ SW MI G + D+AL F ML +PDE V V
Sbjct: 288 GDLDTAKELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSV 347
Query: 172 LSACTH 177
+SAC
Sbjct: 348 VSACAQ 353
>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 762
Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 66/185 (35%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++SW ++++ ++ G V+ A F +MP RD V W +M+ Y + + EAL LF
Sbjct: 318 MPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALF 377
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M+ + E T+VS+L+A A+L ALD G + TYI+ N+++ + G AL+DMY C
Sbjct: 378 DQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKC 437
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ A KD +W T+I G+AI GN +A +F +M A ++P+++ +V +L
Sbjct: 438 GKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAIL 497
Query: 173 SACTH 177
SAC+H
Sbjct: 498 SACSH 502
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 16/176 (9%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
++++ Y N + A+Q F+ RD V W AMIDGY++ A +F M +
Sbjct: 234 SSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRM----VC 289
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
D + +++ A + +D K D+ +N + + N+++ + C +VE A
Sbjct: 290 RDVISWNTMINGYAIVGKIDEA---KRLFDEMPERN-LVSWNSMLAGFVKCGNVEDAFGL 345
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+D SW +M+ A G ++AL +F QM +KP E V +LSAC H
Sbjct: 346 FSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAH 401
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G++ +A Q F+ M +D + W +I G +EA LF+EM+ + +
Sbjct: 428 TALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVE 487
Query: 70 GDEFTIVSILTARANLRALDLGE 92
++ T V+IL+A ++ +D G+
Sbjct: 488 PNDITFVAILSACSHAGMVDEGQ 510
>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
Length = 585
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D++SW +++ Y G++++AR+ FB+M +++ + W+ MIDGY +EAL LF
Sbjct: 234 MPTRDLVSWNSMIDGYAKVGEMEVAREIFBKMLQKNVISWSIMIDGYAXHRDSKEALNLF 293
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++M I D ++V ++A + L ALD G WI Y+ +N++ DI AL+DMY C
Sbjct: 294 RQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKC 353
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++A +++ SW MIVGL ++G G +AL+ F QM I D++ ++GVL
Sbjct: 354 GSXDEARXIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFXQMEMERIPMDDLLFLGVL 413
Query: 173 SACTH 177
AC+H
Sbjct: 414 MACSH 418
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 85/182 (46%), Gaps = 17/182 (9%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV ++S Y G+ AR FD E+D V W +M+ GY+ A +F EM
Sbjct: 144 DVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMP 203
Query: 65 TSNIMGDEFTIVSILTARANL-RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+++ I + RA + + D + D+ + N++ID Y ++
Sbjct: 204 ERDVVSWSIMIDGYGKKMGEVNRA-------RVFFDSMPTR-DLVSWNSMIDGYAKVGEM 255
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E A QK+ SW+ MI G A + +AL++F QML IKPD V+ VG +SAC
Sbjct: 256 EVAREIFBKMLQKNVISWSIMIDGYAXHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSAC 315
Query: 176 TH 177
+
Sbjct: 316 SQ 317
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 11/154 (7%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
++VS+ +N V+ A F Q+ + + + M+ Y + AL + EM+ ++G
Sbjct: 52 SVVSKTLN---VNYAELVFAQIHQPNSFICNTMVKCYTESSTPERALRFYAEMRKKGLLG 108
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA---- 126
D +T +L A + L G ++ K D+F N LI MYC C + A
Sbjct: 109 DNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVF 168
Query: 127 ----QKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
+KD SW +M+ G G + A +MF +M
Sbjct: 169 DGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEM 202
>gi|226531155|ref|NP_001148193.1| methyltransferase small domain [Zea mays]
gi|195616632|gb|ACG30146.1| methyltransferase small domain [Zea mays]
Length = 656
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/180 (41%), Positives = 102/180 (56%), Gaps = 10/180 (5%)
Query: 8 SWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN 67
SW A+++ + G + AR+ FD MPERD V W+ MI GY++ R AL LF M ++
Sbjct: 345 SWNALLAALLRNGLIREARELFDDMPERDTVSWSTMISGYVQTGRSDMALKLFYSMLNTS 404
Query: 68 IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127
I +E T+ S L+A A+ LD G+WI YI V+ + LIDMY C + A
Sbjct: 405 IEPNEVTLASALSAIADSGTLDQGKWIHDYIMNRPVQLTDNLSSGLIDMYAKCGSIADAV 464
Query: 128 K------DKFS----WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+ DKFS W MI LAI G +LD+FSQ+ R SIKP+ + ++GVLSAC H
Sbjct: 465 QFFNRVNDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQLQRTSIKPNSITFIGVLSACCH 524
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 92/214 (42%), Gaps = 40/214 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ ++W +++ Y+ +D+A + F ++PERD V W +IDGY+ + +A+ +
Sbjct: 205 MTHRNTVTWNVMLNGYVKAKMIDMAAEVFWRIPERDEVSWLTLIDGYICADLISDAMKAY 264
Query: 61 QEMQTSNIMGD-EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+M D E +V ++ A A A+ G+ + T I KN F L+ Y
Sbjct: 265 VQMVGEVGANDYEVLLVDLMKACARYSAVTEGQQLHTVILKNGFDALAFVQATLVHFYGC 324
Query: 120 CADVEKAQ---------------------------------------KDKFSWTTMIVGL 140
C + AQ +D SW+TMI G
Sbjct: 325 CGLIGLAQMTFRLSDKSHTASWNALLAALLRNGLIREARELFDDMPERDTVSWSTMISGY 384
Query: 141 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+G D AL +F ML SI+P+EV LSA
Sbjct: 385 VQTGRSDMALKLFYSMLNTSIEPNEVTLASALSA 418
Score = 39.3 bits (90), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 61/137 (44%), Gaps = 15/137 (10%)
Query: 48 LRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDI 107
LR AL + SN+ F S+L++ + L + L ++ + + D
Sbjct: 22 LRCGEQLHALAAKSGLLASNV----FVRNSVLSSYSRLPS-SLASALQLFDETPPPLRDA 76
Query: 108 FAGNALIDMYCICADVEKAQ----------KDKFSWTTMIVGLAISGNGDKALDMFSQML 157
A N+++ +++AQ +D S+TT++ A +G+ +A+ +F ML
Sbjct: 77 TARNSILAALTRAGHLDRAQGLLEEMPRIHRDAVSYTTLVTAFARAGHAARAVAVFRSML 136
Query: 158 RASIKPDEVAYVGVLSA 174
++ P+E G ++A
Sbjct: 137 SENVVPNEATLAGAITA 153
>gi|147771061|emb|CAN60969.1| hypothetical protein VITISV_033859 [Vitis vinifera]
Length = 722
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 109/185 (58%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M DV+SW+ +V ++ G++++ARQ FD+MPERD V WT M+ GY + R REAL LF
Sbjct: 406 MVGADVVSWSGLVVAHVRAGELELARQVFDEMPERDVVSWTVMVSGYAQAKRSREALELF 465
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY--C 118
+EM+ + DE +V +++A +L L+ G + YID+N + NALIDMY C
Sbjct: 466 REMRDVGVRPDEVAMVIVISACTSLGDLETGFEVHRYIDENGFGWMVSLCNALIDMYAKC 525
Query: 119 ICADV------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
C D+ +K +W +MI A GN + A +F+ ML + I+PD V ++ +L
Sbjct: 526 GCMDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLXSGIRPDGVTFLALL 585
Query: 173 SACTH 177
+A TH
Sbjct: 586 TAYTH 590
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 88/201 (43%), Gaps = 45/201 (22%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G + A + F Q+ + + + +I GY + + +++ LF +M+ + + D FT +L
Sbjct: 289 GCLHYADRLFSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLL 348
Query: 80 TARANLRALDL-----GEWIKTYIDKNKVKNDIFAGNALIDMYC---------------I 119
R+ +R +DL + I + K +F NALI +Y +
Sbjct: 349 KGRSRMR-IDLPLIVASDEIHGAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMV 407
Query: 120 CADV------------------------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQ 155
ADV E ++D SWT M+ G A + +AL++F +
Sbjct: 408 GADVVSWSGLVVAHVRAGELELARQVFDEMPERDVVSWTVMVSGYAQAKRSREALELFRE 467
Query: 156 MLRASIKPDEVAYVGVLSACT 176
M ++PDEVA V V+SACT
Sbjct: 468 MRDVGVRPDEVAMVIVISACT 488
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 12/168 (7%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G +D+A Q F+ M + + W +MI +A +F M S I
Sbjct: 517 ALIDMYAKCGCMDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLXSGIRP 576
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKN-KVKNDIFAGNALIDMYCICADVEKAQK- 128
D T +++LTA + +D G + + ++ V+ + ++DM +E+A K
Sbjct: 577 DGVTFLALLTAYTHKGWVDDGYGLFESMQRDYGVEAGVEHYGCMVDMLGRAGRLEEAYKL 636
Query: 129 --------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
+ W ++ I G+ + + +++ +KPDE Y
Sbjct: 637 ITSMSMPCNDVVWGALLAACRIYGDVEMGERVLKKLI--ELKPDEGGY 682
>gi|414886077|tpg|DAA62091.1| TPA: methyltransferase small domain protein [Zea mays]
Length = 656
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/180 (41%), Positives = 102/180 (56%), Gaps = 10/180 (5%)
Query: 8 SWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN 67
SW A+++ + G + AR+ FD MPERD V W+ MI GY++ R AL LF M ++
Sbjct: 345 SWNALLAALLRNGLIREARELFDDMPERDTVSWSTMISGYVQTGRSDMALKLFYSMLNTS 404
Query: 68 IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127
I +E T+ S L+A A+ LD G+WI YI V+ + LIDMY C + A
Sbjct: 405 IEPNEVTLASALSAIADSGTLDQGKWIHDYIMNRPVQLTDNLSSGLIDMYAKCGSIADAV 464
Query: 128 K------DKFS----WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+ DKFS W MI LAI G +LD+FSQ+ R SIKP+ + ++GVLSAC H
Sbjct: 465 QFFNRVNDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQLQRTSIKPNSITFIGVLSACCH 524
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 91/214 (42%), Gaps = 40/214 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ ++W +++ Y+ +D+A + F ++PERD V W +IDGY+ + +A+ +
Sbjct: 205 MTYRNTVTWNVMLNGYVKAKMIDMAAEVFWRIPERDEVSWLTLIDGYICADLISDAMKAY 264
Query: 61 QEMQTSNIMGD-EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+M D E +V ++ A A A+ G+ + T I KN F L+ Y
Sbjct: 265 VQMVGEVGANDYEVLLVDLMKACARYSAVTEGQQLHTVILKNGFDAHAFVQATLVHFYGC 324
Query: 120 CADVEKAQ---------------------------------------KDKFSWTTMIVGL 140
C + AQ +D SW+TMI G
Sbjct: 325 CGLIGLAQMTFRLSDKSHTASWNALLAALLRNGLIREARELFDDMPERDTVSWSTMISGY 384
Query: 141 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+G D AL +F ML SI+P+EV LSA
Sbjct: 385 VQTGRSDMALKLFYSMLNTSIEPNEVTLASALSA 418
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 31/53 (58%)
Query: 122 DVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
++ + +D S+TT++ A +G+ +A+ +F ML ++ P+E G ++A
Sbjct: 101 EMPRIHRDAVSYTTLVTSFARAGHAARAVAVFRSMLSENVVPNEATLAGAITA 153
>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Glycine max]
Length = 521
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 108/185 (58%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++SW ++ Y+ G+ + A Q FD +P ++ + WTA+I G+++ + EAL F
Sbjct: 156 MGVRNLVSWNTMIDGYMRNGKFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECF 215
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY--C 118
+EMQ S + D T+++++ A ANL L LG W+ + +N++ N+LIDMY C
Sbjct: 216 REMQLSGVAPDYVTVIAVIAACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRC 275
Query: 119 ICADVEK------AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
C D+ + Q+ SW ++IVG A++G D+AL F+ M KPD V+Y G L
Sbjct: 276 GCIDLARQVFDRMPQRTLVSWNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYTGAL 335
Query: 173 SACTH 177
AC+H
Sbjct: 336 MACSH 340
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 43/181 (23%)
Query: 38 VLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL---RALDLGEWI 94
V WT I Y + +A + F +M+ + I + T +++L+A A+ ++ G I
Sbjct: 57 VSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYPSRSSISFGTAI 116
Query: 95 KTYIDKNKVK-NDIFAGNALIDMYCICADVEKAQ-------------------------- 127
++ K + ND+ G ALIDMY C VE A+
Sbjct: 117 HAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRNGK 176
Query: 128 -------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
K+ SWT +I G ++AL+ F +M + + PD V + V++A
Sbjct: 177 FEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVIAA 236
Query: 175 C 175
C
Sbjct: 237 C 237
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
SWTT I SG+ KA F QM A+I+P+ + ++ +LSAC H
Sbjct: 58 SWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAH 103
>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
Length = 444
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 107/185 (57%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K ++S TA+++ Y G +D AR FD + ERD + W MIDGY + E L LF
Sbjct: 1 MPEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLF 60
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++M + + +E T++++L+A AL+ G W+ +YI+ N + ++ G +LIDMY C
Sbjct: 61 RQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKC 120
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E A+ KD +W +M+VG A+ G AL +F +M +P ++ ++GVL
Sbjct: 121 GSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVL 180
Query: 173 SACTH 177
+AC+H
Sbjct: 181 NACSH 185
>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Vitis vinifera]
Length = 590
Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats.
Identities = 65/176 (36%), Positives = 110/176 (62%), Gaps = 8/176 (4%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+V Y+ + AR+ FD++P+RD V WT++I G ++ + +++L LF +MQ S +
Sbjct: 243 ALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEP 302
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA---- 126
D + S+L+A A+L ALD G W++ YI++ ++ DI G AL+DMY C +E A
Sbjct: 303 DRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIF 362
Query: 127 ----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
++ F+W ++ GLA+ G+G +AL F M+ A I+P+EV ++ +L+AC H+
Sbjct: 363 NGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHS 418
Score = 93.2 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 54/159 (33%), Positives = 84/159 (52%), Gaps = 11/159 (6%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A + FD+M RD V WT +I GY+R F EA+ LF +M +++ + T VS+L A
Sbjct: 159 AGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLKM---DVVPNVATFVSVLVACGR 215
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTM 136
+ L +G+ + + K + GNAL+DMY C + +A+K D SWT++
Sbjct: 216 MGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSI 275
Query: 137 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
I GL +L++F M + ++PD + VLSAC
Sbjct: 276 ISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSAC 314
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 20/177 (11%)
Query: 13 VSRYINR--GQVDIARQCFDQMPERDY----VLWTAMIDGYLRVNRFREALTLFQEMQTS 66
VS + + G VD A FD + + D + + +I Y + A ++ + +
Sbjct: 43 VSEFFGKHIGFVDYA---FDFLNQTDLHVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGN 99
Query: 67 NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--- 123
+ D +T +L A + GE + K D++ N+L+ Y +C
Sbjct: 100 GFVPDMYTFPVVLKACTKFLGVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGA 159
Query: 124 -----EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E +D SWT +I G +G D+A+++F L+ + P+ +V VL AC
Sbjct: 160 GRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLF---LKMDVVPNVATFVSVLVAC 213
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 38/164 (23%), Positives = 70/164 (42%), Gaps = 11/164 (6%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ TA+V Y G +++A F+ +P R+ W A++ G EAL F+ M
Sbjct: 338 DIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMI 397
Query: 65 TSNIMGDEFTIVSILTA--RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ I +E T ++ILTA + L A + + + +ID+ C
Sbjct: 398 GAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGL 457
Query: 123 VEKAQK---------DKFSWTTMIVGLAISGNGDKALDMFSQML 157
+++A K D W ++ +GN + + ++ S +L
Sbjct: 458 LDEAYKFIRNMPLPPDVLIWGALLSACKANGNVELSQEILSHLL 501
>gi|334182333|ref|NP_172105.4| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
gi|8810477|gb|AAF80138.1|AC024174_20 Contains similarity to an unknown protein T5J8.5 gi|4263522 from
Arabidopsis thaliana BAC T5J8 gb|AC004044 and contains
multiple PPR PF|01535 repeats. ESTs gb|AV565358,
gb|AV558710, gb|AV524184 come from this gene [Arabidopsis
thaliana]
gi|332189826|gb|AEE27947.1| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
Length = 1322
Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+ + +++ Y+ G ++ A F+QMP +D + WT MI GY + R+REA+ +F
Sbjct: 961 MSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVF 1020
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M I+ DE T+ ++++A A+L L++G+ + Y +N D++ G+AL+DMY C
Sbjct: 1021 YKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKC 1080
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E+A +K+ F W ++I GLA G +AL MF++M S+KP+ V +V V
Sbjct: 1081 GSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVF 1140
Query: 173 SACTH 177
+ACTH
Sbjct: 1141 TACTH 1145
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 25/171 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV +A+V Y G ++ A F +P+++ W ++I+G +EAL +F +M+
Sbjct: 1066 DVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKME 1125
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
++ + T VS+ TA + +D G I ++ID Y I ++VE
Sbjct: 1126 MESVKPNAVTFVSVFTACTHAGLVDEGRRIY---------------RSMIDDYSIVSNVE 1170
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ + +G +AL++ M +P+ V + +L C
Sbjct: 1171 H-------YGGMVHLFSKAGLIYEALELIGNM---EFEPNAVIWGALLDGC 1211
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 64/144 (44%), Gaps = 10/144 (6%)
Query: 21 QVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80
++D+A QM E + ++ A+ G++ + +L L+ M ++ +T S++
Sbjct: 820 RLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLV- 878
Query: 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFS 132
+A+ A GE ++ +I K + LID Y + +A+K D +
Sbjct: 879 -KASSFASRFGESLQAHIWKFGFGFHVKIQTTLIDFYSATGRIREARKVFDEMPERDDIA 937
Query: 133 WTTMIVGLAISGNGDKALDMFSQM 156
WTTM+ + D A + +QM
Sbjct: 938 WTTMVSAYRRVLDMDSANSLANQM 961
>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 904
Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 116/186 (62%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NK V++W +IV+ YI G+VD A + F+ MPE++ V W +I ++ N + EA+ +F
Sbjct: 397 MSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIEVF 456
Query: 61 QEMQTSNIMG-DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
MQ+ + D T++SI +A +L ALDL +WI YI+KN+++ D+ G L+DM+
Sbjct: 457 HYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNRIQLDVRLGTTLVDMFSR 516
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C D E A +D +WT I +A++GN ++A+++F++M+ +KPD V ++G
Sbjct: 517 CGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIELFNEMIEQGLKPDGVVFIGA 576
Query: 172 LSACTH 177
L+AC H
Sbjct: 577 LTACCH 582
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 105/183 (57%), Gaps = 9/183 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD+ ++V Y G++D AR+ FD+M ER+ V WT+MI GY R ++A+ LF M
Sbjct: 166 KDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFFRM 225
Query: 64 -QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ +++ + T+V +++A A L L+ GE + +I + ++ + +AL+DMY C
Sbjct: 226 VRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMYMKCNA 285
Query: 123 VEKAQK--DKFSWTTMIVGLAISGN------GDKALDMFSQMLRASIKPDEVAYVGVLSA 174
++ A++ D++ + + + A++ N +AL + + M+ + I+PD ++ + +S+
Sbjct: 286 IDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISS 345
Query: 175 CTH 177
C+
Sbjct: 346 CSQ 348
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 13/184 (7%)
Query: 5 DVISWTAIVSRYINRG---QVDIARQCFDQMPERDYV-LWTAMIDGYLRVNRFREALTLF 60
DV + T +V+R G + A++ F+ ++ ++I GY +EA+ LF
Sbjct: 62 DVSAITKLVARSCELGTRESLSFAKEVFENGESYGTCFMYNSLIRGYASSGLCKEAILLF 121
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M S I D++T L+ A R G I I K D+F N+L+ Y C
Sbjct: 122 IRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLIIKMDYAKDLFVQNSLVHFYAEC 181
Query: 121 ADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGV 171
++ E ++++ SWT+MI G A A+D+F +M+R + P+ V V V
Sbjct: 182 GELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCV 241
Query: 172 LSAC 175
+SAC
Sbjct: 242 ISAC 245
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 8/160 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+A+V Y+ +DIA++ FD+ + L AM Y+R +EAL + M S I
Sbjct: 274 SALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIR 333
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
D +++S +++ + LR + G+ Y+ +N ++ NALIDMY C + A
Sbjct: 334 PDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRI 393
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI 161
K +W +++ G +G D A + F+ M +I
Sbjct: 394 FDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNI 433
>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
Length = 761
Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 113/183 (61%), Gaps = 9/183 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
++ ++W A++S Y G +D AR+ F+ MP R+ V W +MI GY + + A+ LF+EM
Sbjct: 325 RNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEM 384
Query: 64 QTS-NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
T+ + DE T+VS+++A +L AL+LG W+ ++ +N++K I NA+I MY C
Sbjct: 385 ITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGS 444
Query: 123 VEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+E A+ +D S+ T+I G A G+G +A+++ S M I+PD V ++GVL+A
Sbjct: 445 MEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTA 504
Query: 175 CTH 177
C+H
Sbjct: 505 CSH 507
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 102/218 (46%), Gaps = 41/218 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++VI+WTA+V+ Y ++ AR+ FD MPER V W AM+ GY + E L LF
Sbjct: 189 MPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLF 248
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM + I DE T V++++A ++ L + + + +++ + F AL+DMY C
Sbjct: 249 DEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKC 308
Query: 121 ADVEKAQ----------------------------------------KDKFSWTTMIVGL 140
+ A+ ++ +W +MI G
Sbjct: 309 GSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGY 368
Query: 141 AISGNGDKALDMFSQMLRA-SIKPDEVAYVGVLSACTH 177
A +G A+++F +M+ A + PDEV V V+SAC H
Sbjct: 369 AQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGH 406
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 33/177 (18%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMP--ERDYVLWTAMIDGYLRVNRFREALTL 59
D A++ Y G + AR+ FD++P ER W AM+ GY + +A L
Sbjct: 126 HGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWL 185
Query: 60 FQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
F M N++ T +++T A ++ L E + Y D C+
Sbjct: 186 FDVMPERNVI----TWTAMVTGYAKVKDL---EAARRYFD------------------CM 220
Query: 120 CADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
++ SW M+ G A +G ++ L +F +M+ A I+PDE +V V+SAC+
Sbjct: 221 ------PERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACS 271
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G ++ A++ F +M RD V + +I G+ EA+ L M+ I
Sbjct: 434 AMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEP 493
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
D T + +LTA ++ L+ G + I + D +A ++D+ ++E A++
Sbjct: 494 DRVTFIGVLTACSHAGLLEEGRKVFESIKDPAI--DHYA--CMVDLLGRVGELEDAKR 547
>gi|414886078|tpg|DAA62092.1| TPA: hypothetical protein ZEAMMB73_488923 [Zea mays]
Length = 714
Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 75/180 (41%), Positives = 102/180 (56%), Gaps = 10/180 (5%)
Query: 8 SWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN 67
SW A+++ + G + AR+ FD MPERD V W+ MI GY++ R AL LF M ++
Sbjct: 345 SWNALLAALLRNGLIREARELFDDMPERDTVSWSTMISGYVQTGRSDMALKLFYSMLNTS 404
Query: 68 IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127
I +E T+ S L+A A+ LD G+WI YI V+ + LIDMY C + A
Sbjct: 405 IEPNEVTLASALSAIADSGTLDQGKWIHDYIMNRPVQLTDNLSSGLIDMYAKCGSIADAV 464
Query: 128 K------DKFS----WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+ DKFS W MI LAI G +LD+FSQ+ R SIKP+ + ++GVLSAC H
Sbjct: 465 QFFNRVNDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQLQRTSIKPNSITFIGVLSACCH 524
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 91/214 (42%), Gaps = 40/214 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ ++W +++ Y+ +D+A + F ++PERD V W +IDGY+ + +A+ +
Sbjct: 205 MTYRNTVTWNVMLNGYVKAKMIDMAAEVFWRIPERDEVSWLTLIDGYICADLISDAMKAY 264
Query: 61 QEMQTSNIMGD-EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+M D E +V ++ A A A+ G+ + T I KN F L+ Y
Sbjct: 265 VQMVGEVGANDYEVLLVDLMKACARYSAVTEGQQLHTVILKNGFDAHAFVQATLVHFYGC 324
Query: 120 CADVEKAQ---------------------------------------KDKFSWTTMIVGL 140
C + AQ +D SW+TMI G
Sbjct: 325 CGLIGLAQMTFRLSDKSHTASWNALLAALLRNGLIREARELFDDMPERDTVSWSTMISGY 384
Query: 141 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+G D AL +F ML SI+P+EV LSA
Sbjct: 385 VQTGRSDMALKLFYSMLNTSIEPNEVTLASALSA 418
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 31/53 (58%)
Query: 122 DVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
++ + +D S+TT++ A +G+ +A+ +F ML ++ P+E G ++A
Sbjct: 101 EMPRIHRDAVSYTTLVTSFARAGHAARAVAVFRSMLSENVVPNEATLAGAITA 153
>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g40405
gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 612
Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 107/180 (59%), Gaps = 8/180 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + TA+V+ G V AR+ F+ MPERD + W AMI GY +V REAL +F MQ
Sbjct: 173 DFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQ 232
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ + ++S+L+A L ALD G W +YI++NK+K + L+D+Y C D+E
Sbjct: 233 LEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDME 292
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
KA +K+ ++W++ + GLA++G G+K L++FS M + + P+ V +V VL C+
Sbjct: 293 KAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCS 352
Score = 36.2 bits (82), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFQEMQTSNI 68
T +V Y G ++ A + F M E++ W++ ++G L +N F E L LF M+ +
Sbjct: 279 TTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNG-LAMNGFGEKCLELFSLMKQDGV 337
Query: 69 MGDEFTIVSILTARANLRALDLGE-WIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126
+ T VS+L + + +D G+ + ++ ++ + L+D+Y +E A
Sbjct: 338 TPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDA 396
>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Glycine max]
Length = 563
Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/184 (40%), Positives = 111/184 (60%), Gaps = 9/184 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N ++I TAI+ Y G++ IAR F++MP+R+ V W +MI+ Y + R +EAL LF +
Sbjct: 244 NSNIILATAILEMYAKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERHQEALDLFFD 303
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M TS + D+ T +S+L+ A+ AL LG+ + Y+ K + DI AL+DMY +
Sbjct: 304 MWTSGVYPDKATFLSVLSVCAHQCALALGQTVHAYLLKTGIATDISLATALLDMYAKTGE 363
Query: 123 VEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGVLS 173
+ AQ KD WT+MI GLA+ G+G++AL MF M +S+ PD + Y+GVL
Sbjct: 364 LGNAQKIFSSLQKKDVVMWTSMINGLAMHGHGNEALSMFQTMQEDSSLVPDHITYIGVLF 423
Query: 174 ACTH 177
AC+H
Sbjct: 424 ACSH 427
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 96/188 (51%), Gaps = 15/188 (7%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + T ++ Y++ + + FD +P+ + V WT +I GY++ N+ EAL +F++M
Sbjct: 138 DAYTATGLLHMYVSCADMKSGLKVFDNIPKWNVVAWTCLIAGYVKNNQPYEALKVFEDMS 197
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK-------NKVKNDIFAGNALIDMY 117
N+ +E T+V+ L A A+ R +D G W+ I K + ++I A+++MY
Sbjct: 198 HWNVEPNEITMVNALIACAHSRDIDTGRWVHQRIRKAGYDPFMSTSNSNIILATAILEMY 257
Query: 118 CICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
C ++ A Q++ SW +MI +ALD+F M + + PD+ ++
Sbjct: 258 AKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERHQEALDLFFDMWTSGVYPDKATFL 317
Query: 170 GVLSACTH 177
VLS C H
Sbjct: 318 SVLSVCAH 325
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 8/167 (4%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G ++ A Q+ +W +MI G++ + R ++ L+++M + D FT +L
Sbjct: 52 GDINYADLVLRQIHNPSVYIWNSMIRGFVNSHNPRMSMLLYRQMIENGYSPDHFTFPFVL 111
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKF 131
A + D G+ I + I K+ + D + L+ MY CAD++ K +
Sbjct: 112 KACCVIADQDCGKCIHSCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPKWNVV 171
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+WT +I G + +AL +F M +++P+E+ V L AC H+
Sbjct: 172 AWTCLIAGYVKNNQPYEALKVFEDMSHWNVEPNEITMVNALIACAHS 218
>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW+ +VS Y G +++AR FD+MP ++ V WT ++ GY ++A+ F
Sbjct: 69 MPERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDAIRSF 128
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++M+ + + D+ T++SIL + A L LG+ + T I++ + K + NAL+DMY C
Sbjct: 129 EQMEEAGLKPDDGTVISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSNALVDMYAKC 188
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
V++A +KD SW M+ GLA+ G+G+KAL +FS M + +PD+V V VL
Sbjct: 189 GQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPDKVTLVAVL 248
Query: 173 SACTH 177
AC H
Sbjct: 249 CACVH 253
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 81/186 (43%), Gaps = 47/186 (25%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW +++ + G++ A + FD+MP +D V W ++DGY++ +A LF
Sbjct: 7 MDERDVVSWNSMIRGLLKVGELSEACKLFDEMPMKDAVSWNTILDGYVKAGEMNKAFGLF 66
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M N++ W + ++ YC
Sbjct: 67 ESMPERNVV----------------------SW-----------------STMVSGYCKA 87
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
D+E A+ K+ SWT ++ G A+ G A+ F QM A +KPD+ + +L
Sbjct: 88 GDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDAIRSFEQMEEAGLKPDDGTVISIL 147
Query: 173 SACTHN 178
++C +
Sbjct: 148 ASCAES 153
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
A+V Y GQVD A F+ M ++D V W M+ G +AL LF M+
Sbjct: 179 NALVDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFR 238
Query: 70 GDEFTIVSILTARANLRALDLG 91
D+ T+V++L A + +D G
Sbjct: 239 PDKVTLVAVLCACVHAGFVDEG 260
>gi|193806402|sp|Q56X05.2|PPR15_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06145; AltName: Full=Protein EMBRYO DEFECTIVE 1444
Length = 577
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+ + +++ Y+ G ++ A F+QMP +D + WT MI GY + R+REA+ +F
Sbjct: 216 MSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVF 275
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M I+ DE T+ ++++A A+L L++G+ + Y +N D++ G+AL+DMY C
Sbjct: 276 YKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKC 335
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E+A +K+ F W ++I GLA G +AL MF++M S+KP+ V +V V
Sbjct: 336 GSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVF 395
Query: 173 SACTH 177
+ACTH
Sbjct: 396 TACTH 400
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 25/171 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV +A+V Y G ++ A F +P+++ W ++I+G +EAL +F +M+
Sbjct: 321 DVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKME 380
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
++ + T VS+ TA + +D G I ++ID Y I ++VE
Sbjct: 381 MESVKPNAVTFVSVFTACTHAGLVDEGRRIY---------------RSMIDDYSIVSNVE 425
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ + +G +AL++ M +P+ V + +L C
Sbjct: 426 H-------YGGMVHLFSKAGLIYEALELIGNM---EFEPNAVIWGALLDGC 466
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 64/144 (44%), Gaps = 10/144 (6%)
Query: 21 QVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80
++D+A QM E + ++ A+ G++ + +L L+ M ++ +T S++
Sbjct: 75 RLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLV- 133
Query: 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFS 132
+A+ A GE ++ +I K + LID Y + +A+K D +
Sbjct: 134 -KASSFASRFGESLQAHIWKFGFGFHVKIQTTLIDFYSATGRIREARKVFDEMPERDDIA 192
Query: 133 WTTMIVGLAISGNGDKALDMFSQM 156
WTTM+ + D A + +QM
Sbjct: 193 WTTMVSAYRRVLDMDSANSLANQM 216
>gi|62321090|dbj|BAD94184.1| hypothetical protein [Arabidopsis thaliana]
Length = 577
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+ + +++ Y+ G ++ A F+QMP +D + WT MI GY + R+REA+ +F
Sbjct: 216 MSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVF 275
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M I+ DE T+ ++++A A+L L++G+ + Y +N D++ G+AL+DMY C
Sbjct: 276 YKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKC 335
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E+A +K+ F W ++I GLA G +AL MF++M S+KP+ V +V V
Sbjct: 336 GSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVF 395
Query: 173 SACTH 177
+ACTH
Sbjct: 396 TACTH 400
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 25/171 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV +A+V Y G ++ A F +P+++ W ++I+G +EAL +F +M+
Sbjct: 321 DVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKME 380
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
++ + T VS+ TA + +D G I ++ID Y I ++VE
Sbjct: 381 MESVKPNAVTFVSVFTACTHAGLVDEGRRIY---------------RSMIDDYSIVSNVE 425
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ + +G +AL++ M +P+ V + +L C
Sbjct: 426 H-------YGGMVHLFSKAGLIYEALELIGNM---EFEPNAVIWGALLDGC 466
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 10/143 (6%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81
+D+A QM E + ++ A+ G++ + +L L+ M ++ +T S++
Sbjct: 76 LDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLV-- 133
Query: 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSW 133
+A+ A GE ++ +I K + LID Y + +A+K D +W
Sbjct: 134 KASSFASRFGESLQAHIWKFGFGFHVKIQTTLIDFYSATGGIREARKVFDEMPERDDIAW 193
Query: 134 TTMIVGLAISGNGDKALDMFSQM 156
TTM+ + D A + +QM
Sbjct: 194 TTMVSAYRRVLDMDSANSLANQM 216
>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 722
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 109/187 (58%), Gaps = 11/187 (5%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+K +W+++V Y G++++AR+ F+ M ERD + WTAMI GY + + EAL LF+E
Sbjct: 278 SKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKE 337
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWI-KTYIDKNKVKNDIFAGNALIDMYCICA 121
M+ I DE T+V++L+A A L A DLG+ + YI+ + A++DMY C
Sbjct: 338 MEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCG 397
Query: 122 DVEKA----------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
++ A K F + +MI GLA G G+ A+ +F +++ +KPDEV +VGV
Sbjct: 398 SIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGV 457
Query: 172 LSACTHN 178
L AC H+
Sbjct: 458 LCACGHS 464
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 100/214 (46%), Gaps = 42/214 (19%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ A++ Y G +++AR FD+ RD V + MI GY VN+ AL LF EMQ
Sbjct: 145 DLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQ 204
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN--KVKNDIFAGNALIDMYCICAD 122
S I+ DEFT V++ + + L ++G+ I + KN + ++I +A++DMY C
Sbjct: 205 NSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGL 264
Query: 123 VEKA----------------------------------------QKDKFSWTTMIVGLAI 142
+ A ++D SWT MI G +
Sbjct: 265 INIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQ 324
Query: 143 SGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+G +AL++F +M IKPDEV V VLSAC
Sbjct: 325 AGQCSEALELFKEMEALGIKPDEVTLVAVLSACA 358
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 9/164 (5%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG-DEFTIVSILT 80
+D +R F Q+ + +W MI GY R + REA+ L+ M I + FT +L
Sbjct: 60 LDHSRLLFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLN 119
Query: 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFS 132
+ A L +L+ G + ++I K+ ++D+F NALI +Y + ++ A+ +D S
Sbjct: 120 SCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVS 179
Query: 133 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+ TMI G A + AL +F +M + I PDE +V + S C+
Sbjct: 180 YNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCS 223
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 77/172 (44%), Gaps = 19/172 (11%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLF 60
N++ I A++ Y G +D A + F ++ + + ++ +MI G + A+T+F
Sbjct: 380 NQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVF 439
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWI-KTYIDKNKVKNDIFAGNALIDMY-- 117
+E+ ++ + DE T V +L A + ++ G+ + ++ + +K + ++D+
Sbjct: 440 RELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGR 499
Query: 118 --CICADVEKAQKDKFS-----WTTMIVGLAISGN-------GDKALDMFSQ 155
C+ + QK F W ++ GN G K L+M +Q
Sbjct: 500 YGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQ 551
>gi|359489007|ref|XP_002278681.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 663
Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 109/186 (58%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M DV+SW+ +V ++ G++++ARQ F +MPERD V WT M+ GY + R REAL LF
Sbjct: 347 MVGADVVSWSGLVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSREALELF 406
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY--C 118
+EM+ + DE +VS+++A +L L+ G + YID+N + NALIDMY C
Sbjct: 407 REMRDVGVRPDEVAMVSVISACTSLGDLETGFEVHRYIDENGFGWMVSLCNALIDMYAKC 466
Query: 119 ICADV------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
C D+ +K +W +MI A GN + A +F+ ML + I+PD V ++ +L
Sbjct: 467 GCMDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLYSGIRPDGVTFLALL 526
Query: 173 SACTHN 178
+A TH
Sbjct: 527 TAYTHK 532
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 88/201 (43%), Gaps = 45/201 (22%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G + A + F Q+ + + + +I GY + + +++ LF +M+ + + D FT +L
Sbjct: 230 GCLHYADRLFSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLL 289
Query: 80 TARANLRALDL-----GEWIKTYIDKNKVKNDIFAGNALIDMYC---------------I 119
R+ +R +DL + I + K +F NALI +Y +
Sbjct: 290 KGRSRMR-IDLPLIVASDEIHGAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMV 348
Query: 120 CADV------------------------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQ 155
ADV E ++D SWT M+ G A + +AL++F +
Sbjct: 349 GADVVSWSGLVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSREALELFRE 408
Query: 156 MLRASIKPDEVAYVGVLSACT 176
M ++PDEVA V V+SACT
Sbjct: 409 MRDVGVRPDEVAMVSVISACT 429
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 12/168 (7%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G +D+A Q F+ M + + W +MI +A +F M S I
Sbjct: 458 ALIDMYAKCGCMDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLYSGIRP 517
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKN-KVKNDIFAGNALIDMYCICADVEKAQK- 128
D T +++LTA + +D G + + ++ V+ + ++DM +E+A K
Sbjct: 518 DGVTFLALLTAYTHKGWVDDGYGLFESMQRDYGVEAGVEHYGCMVDMLGRAGRLEEAYKL 577
Query: 129 --------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
+ W ++ I G+ + + +++ +KPDE Y
Sbjct: 578 ITSMSMPCNDVVWGALLAACRIYGDVEMGERVLKKLI--ELKPDEGGY 623
>gi|357473845|ref|XP_003607207.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355508262|gb|AES89404.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 542
Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 107/188 (56%), Gaps = 11/188 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K V+SW +++RYI G V AR+ F MPER+ V W +MI G + V + AL LF
Sbjct: 216 MPCKTVVSWNTLIARYIRLGDVQAARRVFGCMPERNAVSWNSMIAGCVSVRDYAGALELF 275
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EMQ + + E T++SIL A A AL++G I + + K + + GNAL++MYC C
Sbjct: 276 SEMQNAGVKPTEVTLISILGACAETGALEIGHKIYESLKVCEHKIESYLGNALVNMYCKC 335
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQM---LRASIKPDEVAYV 169
++ A K W M++GLA+ G ++ +F++M L SI+PD V ++
Sbjct: 336 GNLSLAWEIFNGMKMKTVSCWNAMVIGLAVHGYCEEVFQLFTEMEESLGGSIRPDRVTFI 395
Query: 170 GVLSACTH 177
GVL AC+H
Sbjct: 396 GVLVACSH 403
>gi|359491803|ref|XP_002269228.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 550
Score = 139 bits (349), Expect = 6e-31, Method: Composition-based stats.
Identities = 67/187 (35%), Positives = 113/187 (60%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+ +SW A++S Y +++ AR+ FD+MP+RD W+AM+ GY ++ EAL LF
Sbjct: 202 MPLKNTVSWNAMISGYAGSSRINEARKLFDEMPDRDAASWSAMVSGYSQLGMCNEALDLF 261
Query: 61 QEMQTSNIM-GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
EM T + M +E +VS ++A A LRAL+ G W+ +YI + K++ ++ G L+DMY
Sbjct: 262 MEMVTGDKMIPNEAALVSAVSACAQLRALEEGRWLHSYIKEKKLRINVTLGTVLLDMYGK 321
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C + A +++ SW +MI GLA++G G +AL +F +M P+ + ++ +
Sbjct: 322 CGSILDAAGVFNLMSERNVNSWNSMIAGLALNGCGKEALALFWKMQFVGPSPNAITFIAL 381
Query: 172 LSACTHN 178
L+ C+H+
Sbjct: 382 LTGCSHS 388
Score = 42.4 bits (98), Expect = 0.083, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 9/115 (7%)
Query: 51 NRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAG 110
+R +++T + M + D FT ++ + + LG + ++ K + D+F
Sbjct: 88 SRTLDSVTFYVCMLHAGHFPDNFTFPFLIKSSSASPTSLLGHQLHAHVVKFGLDRDVFVV 147
Query: 111 NALIDMYCICADVEKAQK---------DKFSWTTMIVGLAISGNGDKALDMFSQM 156
N +I +Y ++ A+K D SWTT+I G + SG D+A +F M
Sbjct: 148 NNMIALYSSFRELRSARKVFDESYSLVDVVSWTTLITGFSNSGQIDEARKIFDLM 202
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 40/85 (47%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T ++ Y G + A F+ M ER+ W +MI G +EAL LF +MQ
Sbjct: 313 TVLLDMYGKCGSILDAAGVFNLMSERNVNSWNSMIAGLALNGCGKEALALFWKMQFVGPS 372
Query: 70 GDEFTIVSILTARANLRALDLGEWI 94
+ T +++LT ++ + G W+
Sbjct: 373 PNAITFIALLTGCSHSGLITEGRWL 397
>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
Length = 1033
Score = 139 bits (349), Expect = 6e-31, Method: Composition-based stats.
Identities = 74/218 (33%), Positives = 121/218 (55%), Gaps = 41/218 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYV---------------------- 38
M N+DV+SW ++++ Y+ G++++A + FD+MPERD V
Sbjct: 170 MPNRDVVSWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGKCGRCELAEKVF 229
Query: 39 ---------LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALD 89
WT+MI Y++ +AL LF+EM + + D IVS+L+A A+L ++
Sbjct: 230 ETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVE 289
Query: 90 LGEWIKTYIDKNKVK-NDIFAGNALIDMYCICADVEKA---------QKDKFSWTTMIVG 139
G+W+ Y+ NK++ + F G+ALIDMY C +E A +++ W +MI G
Sbjct: 290 EGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISG 349
Query: 140 LAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
LAI G +ALD+F +M R I+P+E+ ++G+LS C+H
Sbjct: 350 LAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSH 387
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 10/147 (6%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT--SNIMGDEFTIVS 77
G +D A F ++ + ++ A+I G+ + E+L L+ M + + G EF+I S
Sbjct: 55 GGLDYASSVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPS 114
Query: 78 ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KD 129
+L A L A D G + + K + D F GN+++ MY ++E A+ +D
Sbjct: 115 VLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRD 174
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQM 156
SW +MI G +G + A ++F +M
Sbjct: 175 VVSWNSMIAGYLKAGEIELASELFDEM 201
Score = 37.7 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 64/139 (46%), Gaps = 11/139 (7%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYV-LWTAMIDGYLRVNRFREALTLFQEMQTSNI 68
+A++ Y G ++ A F + R + W +MI G REAL +F EM+ +I
Sbjct: 312 SALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDI 371
Query: 69 MGDEFTIVSILTARANLRALDLGE-WIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA- 126
+E T + +L+ ++ ++ G+ + ++ +K K+ I +ID++ +E A
Sbjct: 372 EPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDAL 431
Query: 127 --------QKDKFSWTTMI 137
+ D +W ++
Sbjct: 432 GVIQNMPFEADLLAWKAIL 450
>gi|297741134|emb|CBI31865.3| unnamed protein product [Vitis vinifera]
Length = 573
Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 110/176 (62%), Gaps = 8/176 (4%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+V Y+ + AR+ FD++P+RD V WT++I G ++ + +++L LF +MQ S +
Sbjct: 243 ALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEP 302
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA---- 126
D + S+L+A A+L ALD G W++ YI++ ++ DI G AL+DMY C +E A
Sbjct: 303 DRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIF 362
Query: 127 ----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
++ F+W ++ GLA+ G+G +AL F M+ A I+P+EV ++ +L+AC H+
Sbjct: 363 NGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHS 418
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 11/180 (6%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ +++ Y G+ A + FD+M RD V WT +I GY+R F EA+ LF +M
Sbjct: 139 DLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLKM- 197
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+++ + T VS+L A + L +G+ + + K + GNAL+DMY C +
Sbjct: 198 --DVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLC 255
Query: 125 KAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+A+K D SWT++I GL +L++F M + ++PD + VLSAC
Sbjct: 256 EARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACA 315
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 20/177 (11%)
Query: 13 VSRYINR--GQVDIARQCFDQMPERDY----VLWTAMIDGYLRVNRFREALTLFQEMQTS 66
VS + + G VD A FD + + D + + +I Y + A ++ + +
Sbjct: 43 VSEFFGKHIGFVDYA---FDFLNQTDLHVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGN 99
Query: 67 NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126
+ D +T +L A + GE + K D++ N+L+ Y +C A
Sbjct: 100 GFVPDMYTFPVVLKACTKFLGVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGA 159
Query: 127 Q--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+D SWT +I G +G D+A+++F L+ + P+ +V VL AC
Sbjct: 160 GRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLF---LKMDVVPNVATFVSVLVAC 213
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ TA+V Y G +++A F+ +P R+ W A++ G EAL F+ M
Sbjct: 338 DIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMI 397
Query: 65 TSNIMGDEFTIVSILTA 81
+ I +E T ++ILTA
Sbjct: 398 GAGIRPNEVTFLAILTA 414
>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 580
Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 114/188 (60%), Gaps = 11/188 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SWT++V+ Y +++ A F QM E++ V WTA+I G+ + R EAL LF
Sbjct: 209 MPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRGDEALHLF 268
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKN---DIFAGNALIDMY 117
++M+ I FT S+L+A A+L + G+ I +I ++ + +IF NALIDMY
Sbjct: 269 EQMREEGIPPSAFTFASVLSACADLALIARGKEIHGHIIRSTCIDYFCNIFILNALIDMY 328
Query: 118 CICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
C C + A +KD SW ++I G A +G+G+++L +F +M+ A I+P+ V ++
Sbjct: 329 CKCGQMRSATTLFKGMHEKDIVSWNSLITGFAQNGHGEESLAVFERMIEADIRPNHVTFL 388
Query: 170 GVLSACTH 177
G+LSAC H
Sbjct: 389 GLLSACCH 396
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 98/214 (45%), Gaps = 41/214 (19%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
K+ SW I+S Y G + A DQMP+ + V + ++I G +E+L +F+ M
Sbjct: 78 KNTHSWNIIISAYSRSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHHGFRKESLNVFKTM 137
Query: 64 --QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
Q SN++ DEFT+VS++ + A+L A +L + + ++I GNALID Y C
Sbjct: 138 LKQCSNVLFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIIIGNALIDAYGKCG 197
Query: 122 D-------------------------------VEKA--------QKDKFSWTTMIVGLAI 142
+ +E A +K+ SWT +I G A
Sbjct: 198 EPDISFSIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQ 257
Query: 143 SGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+G GD+AL +F QM I P + VLSAC
Sbjct: 258 NGRGDEALHLFEQMREEGIPPSAFTFASVLSACA 291
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 12/110 (10%)
Query: 77 SILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------K 128
S+++ R L LG+ + ++ K + F N LID Y C ++ A K
Sbjct: 19 SLISKCITTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQSAHKVFHVLPVK 78
Query: 129 DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+ SW +I + SG ++A ++ QM KP+ V+Y ++S H+
Sbjct: 79 NTHSWNIIISAYSRSGLFNEAHNLLDQM----PKPNLVSYNSLISGLGHH 124
>gi|255584793|ref|XP_002533114.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527077|gb|EEF29259.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 480
Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 118/187 (63%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD+++W I++ Y+ RG++ AR+ F+++P RD V W AMI G++ +AL +F
Sbjct: 205 MPVKDLVAWNVIITAYVKRGEMACARKLFNEVPRRDVVTWNAMIAGFVHCGENEQALEMF 264
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKN-DIFAGNALIDMYCI 119
+EM + DE T++S+L+A +L L++G+ + + I + + + + GNAL MY
Sbjct: 265 EEMISVGEQPDEVTMLSLLSACTDLGDLEVGKKVHSSILEMSLGDLSVLLGNALTYMYAK 324
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVAYVG 170
C +E+A +KD +W ++IVGLA+ G+ ++++ +F +M R +IKP+E+ +VG
Sbjct: 325 CGSIERALEVFRGMREKDVTTWNSVIVGLALHGHAEESIHLFREMQRLNNIKPNEITFVG 384
Query: 171 VLSACTH 177
VL AC+H
Sbjct: 385 VLVACSH 391
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 67/160 (41%), Gaps = 37/160 (23%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G + IAR+ FD +RD V W+A+ GY R A LF EM
Sbjct: 162 GDLGIAREMFDDSAKRDVVAWSALTAGYARRGELCMARRLFDEMPVK------------- 208
Query: 80 TARANLRALDLGEW---IKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTM 136
DL W I Y+ + ++ L + E ++D +W M
Sbjct: 209 ---------DLVAWNVIITAYVKRGEMA----CARKLFN--------EVPRRDVVTWNAM 247
Query: 137 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
I G G ++AL+MF +M+ +PDEV + +LSACT
Sbjct: 248 IAGFVHCGENEQALEMFEEMISVGEQPDEVTMLSLLSACT 287
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 8/145 (5%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G +D A Q FDQ+ E D +W M+ G + +A++L+ +M+ I D+FT +L
Sbjct: 61 GTIDYAHQLFDQVAEPDIFMWNTMMRGSSQSPSPIKAVSLYTQMENCGIKPDKFTFSFLL 120
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKF 131
A L ++G I K+ + + F N L+ + C D+ + A++D
Sbjct: 121 KACTRLEWRNMGFCIHGKALKHGFQENTFVRNTLVYYHAKCGDLGIAREMFDDSAKRDVV 180
Query: 132 SWTTMIVGLAISGNGDKALDMFSQM 156
+W+ + G A G A +F +M
Sbjct: 181 AWSALTAGYARRGELCMARRLFDEM 205
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 126 AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A+ D F W TM+ G + S + KA+ +++QM IKPD+ + +L ACT
Sbjct: 74 AEPDIFMWNTMMRGSSQSPSPIKAVSLYTQMENCGIKPDKFTFSFLLKACT 124
>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
Length = 603
Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 114/183 (62%), Gaps = 9/183 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
++ ++W A++S Y+ G +D AR+ F+ MP R+ V W +MI GY + + A+ LF+EM
Sbjct: 167 RNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEM 226
Query: 64 QTS-NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
T+ + DE T+VS+++A +L AL+LG W+ ++ +N++K I NA+I MY C
Sbjct: 227 ITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGS 286
Query: 123 VEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+E A+ +D S+ T+I G A G+G +A+++ S M I+PD V ++GVL+A
Sbjct: 287 MEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTA 346
Query: 175 CTH 177
C+H
Sbjct: 347 CSH 349
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 87/189 (46%), Gaps = 21/189 (11%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V W A+VS Y A+ FD MPER+ + WTAM+ GY +V A F
Sbjct: 69 MYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYF 128
Query: 61 QEMQTSNIMGDEFTIVSILT---ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
M +++ + A LR D E + Y +N V NA+I Y
Sbjct: 129 DCMPERSVVSWNAMLSGYAQNGLAEEALRLFD--EMLGAY--RNSV-----TWNAMISAY 179
Query: 118 CICADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVAY 168
D++ A+K + +W +MI G A +G A+++F +M+ A + PDEV
Sbjct: 180 MRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTM 239
Query: 169 VGVLSACTH 177
V V+SAC H
Sbjct: 240 VSVISACGH 248
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G ++ A++ F +M RD V + +I G+ EA+ L M+ I
Sbjct: 276 AMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEP 335
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
D T + +LTA ++ L+ G + I + D +A ++D+ ++E A++
Sbjct: 336 DRVTFIGVLTACSHAGLLEEGRKVFESIKDPAI--DHYA--CMVDLLGRVGELEDAKR 389
>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 684
Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 109/187 (58%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV SWT+++ Y G++D A + F+ MP R+ V W MI G+L R+ EALT F
Sbjct: 239 MSERDVFSWTSLLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFF 298
Query: 61 QEMQTSN-IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
M + + +E +V +L+A A+L ALD G WI YIDK ++ ALIDMY
Sbjct: 299 CNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAK 358
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C ++ A ++D S+T+MI GL+ G G AL +F QML ++ P+E+ +GV
Sbjct: 359 CGRIDCASRVFNGICKRDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVMPNEITILGV 418
Query: 172 LSACTHN 178
L+ C+H+
Sbjct: 419 LNGCSHS 425
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 90/199 (45%), Gaps = 46/199 (23%)
Query: 25 ARQCFDQMPERDYV--LWTAMIDGYLRVNRFREALTLFQEMQTSN----IMGDEFTIVSI 78
AR FD P LW MI Y ++ +E + LF M T + ++ DE+T +
Sbjct: 125 ARILFDHYPSPSPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFV 184
Query: 79 LTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DK 130
+T+ ++ +L GE + + K+ +++++ GN++I+M + A +E A+K D
Sbjct: 185 ITSCSHQISLIYGEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDV 244
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRAS------------------------------ 160
FSWT+++ G A G D+A ++F+ M +
Sbjct: 245 FSWTSLLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCD 304
Query: 161 --IKPDEVAYVGVLSACTH 177
+ P+E V VLSAC H
Sbjct: 305 DRVNPNEAVLVCVLSACAH 323
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 48/85 (56%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ Y G++D A + F+ + +RD + +T+MI G ++AL +F +M N+M
Sbjct: 350 TALIDMYAKCGRIDCASRVFNGICKRDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVM 409
Query: 70 GDEFTIVSILTARANLRALDLGEWI 94
+E TI+ +L ++ ++ G I
Sbjct: 410 PNEITILGVLNGCSHSGLVEEGSSI 434
>gi|356534169|ref|XP_003535630.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Glycine max]
Length = 595
Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 108/186 (58%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ ++++ A++ Y+ V AR+ FD+MPE+D + WT+MI G ++ RE+L LF
Sbjct: 237 LYGEELVVCNAVLDMYMKCDSVTDARKMFDEMPEKDIISWTSMIGGLVQCQSPRESLDLF 296
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+MQ S D + S+L+A A+L LD G W+ YID +++K D+ G L+DMY C
Sbjct: 297 SQMQASGFEPDGVILTSVLSACASLGLLDCGRWVHEYIDCHRIKWDVHIGTTLVDMYAKC 356
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ AQ K+ +W I GLAI+G G +AL F ++ + +P+EV ++ V
Sbjct: 357 GCIDMAQRIFNGMPSKNIRTWNAYIGGLAINGYGKEALKQFEDLVESGTRPNEVTFLAVF 416
Query: 173 SACTHN 178
+AC HN
Sbjct: 417 TACCHN 422
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 84/159 (52%), Gaps = 11/159 (6%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A + F+ M RD V WT +I GY++ F EA++LF M +G T VSIL A
Sbjct: 163 AGKVFEDMLVRDVVSWTGLISGYVKTGLFNEAISLFLRMNVEPNVG---TFVSILGACGK 219
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKFSWTTM 136
L L+LG+ I + K ++ NA++DMY C V E +KD SWT+M
Sbjct: 220 LGRLNLGKGIHGLVFKCLYGEELVVCNAVLDMYMKCDSVTDARKMFDEMPEKDIISWTSM 279
Query: 137 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
I GL + ++LD+FSQM + +PD V VLSAC
Sbjct: 280 IGGLVQCQSPRESLDLFSQMQASGFEPDGVILTSVLSAC 318
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRF-REALTLFQEM 63
DV T +V Y G +D+A++ F+ MP ++ W A I G L +N + +EAL F+++
Sbjct: 342 DVHIGTTLVDMYAKCGCIDMAQRIFNGMPSKNIRTWNAYIGG-LAINGYGKEALKQFEDL 400
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLG 91
S +E T +++ TA + +D G
Sbjct: 401 VESGTRPNEVTFLAVFTACCHNGLVDEG 428
>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g66520-like [Glycine max]
Length = 622
Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 109/185 (58%), Gaps = 9/185 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++D+ SW +++ Y+ G + +A++ FD M ERD V W+ +I GY++V F EAL F +
Sbjct: 178 DRDLYSWNTLIAAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHK 237
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M +E+T+VS L A +NL ALD G+WI YI K ++K + ++IDMY C +
Sbjct: 238 MLQIGPKPNEYTLVSALAACSNLVALDQGKWIHAYIGKGEIKMNERLLASIIDMYAKCGE 297
Query: 123 VEKAQKDKFS---------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+E A + F W MI G A+ G ++A+++F QM I P++V ++ +L+
Sbjct: 298 IESASRVFFEHKVKQKVWLWNAMIGGFAMHGMPNEAINVFEQMKVEKISPNKVTFIALLN 357
Query: 174 ACTHN 178
AC+H
Sbjct: 358 ACSHG 362
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 41/193 (21%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGY-LRVNRFREALTLFQEM-QTSNIMGDEFTIVSILTAR 82
A + FDQ+P+ D ++ MI + L + +L +F+ + Q + + ++ V +A
Sbjct: 66 AHKLFDQIPQPDLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSAC 125
Query: 83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSWT 134
N + GE ++ + K ++N++F NALI MY V ++QK D +SW
Sbjct: 126 GNGLGVQEGEQVRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWN 185
Query: 135 TMIVGLAISGNGD-------------------------------KALDMFSQMLRASIKP 163
T+I SGN +ALD F +ML+ KP
Sbjct: 186 TLIAAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKP 245
Query: 164 DEVAYVGVLSACT 176
+E V L+AC+
Sbjct: 246 NEYTLVSALAACS 258
>gi|296082950|emb|CBI22251.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 138 bits (348), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 109/185 (58%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M DV+SW+ +V ++ G++++ARQ F +MPERD V WT M+ GY + R REAL LF
Sbjct: 160 MVGADVVSWSGLVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSREALELF 219
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY--C 118
+EM+ + DE +VS+++A +L L+ G + YID+N + NALIDMY C
Sbjct: 220 REMRDVGVRPDEVAMVSVISACTSLGDLETGFEVHRYIDENGFGWMVSLCNALIDMYAKC 279
Query: 119 ICADV------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
C D+ +K +W +MI A GN + A +F+ ML + I+PD V ++ +L
Sbjct: 280 GCMDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLYSGIRPDGVTFLALL 339
Query: 173 SACTH 177
+A TH
Sbjct: 340 TAYTH 344
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 88/201 (43%), Gaps = 45/201 (22%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G + A + F Q+ + + + +I GY + + +++ LF +M+ + + D FT +L
Sbjct: 43 GCLHYADRLFSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLL 102
Query: 80 TARANLRALDL-----GEWIKTYIDKNKVKNDIFAGNALIDMYC---------------I 119
R+ +R +DL + I + K +F NALI +Y +
Sbjct: 103 KGRSRMR-IDLPLIVASDEIHGAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMV 161
Query: 120 CADV------------------------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQ 155
ADV E ++D SWT M+ G A + +AL++F +
Sbjct: 162 GADVVSWSGLVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSREALELFRE 221
Query: 156 MLRASIKPDEVAYVGVLSACT 176
M ++PDEVA V V+SACT
Sbjct: 222 MRDVGVRPDEVAMVSVISACT 242
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 12/168 (7%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G +D+A Q F+ M + + W +MI +A +F M S I
Sbjct: 271 ALIDMYAKCGCMDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLYSGIRP 330
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKN-KVKNDIFAGNALIDMYCICADVEKAQK- 128
D T +++LTA + +D G + + ++ V+ + ++DM +E+A K
Sbjct: 331 DGVTFLALLTAYTHKGWVDDGYGLFESMQRDYGVEAGVEHYGCMVDMLGRAGRLEEAYKL 390
Query: 129 --------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
+ W ++ I G+ + + +++ +KPDE Y
Sbjct: 391 ITSMSMPCNDVVWGALLAACRIYGDVEMGERVLKKLI--ELKPDEGGY 436
>gi|334188487|ref|NP_200728.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170817|sp|Q9FIF7.1|PP435_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic; Flags: Precursor
gi|9759241|dbj|BAB09765.1| unnamed protein product [Arabidopsis thaliana]
gi|332009773|gb|AED97156.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 544
Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 113/185 (61%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++D ++ T +++ Y G + A + F + +D V WTAMIDG +R +AL LF
Sbjct: 184 MPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELF 243
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ N+ +EFT V +L+A ++L AL+LG W+ ++++ +++ F GNALI+MY C
Sbjct: 244 REMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRC 303
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
D+ +A+ KD S+ TMI GLA+ G +A++ F M+ +P++V V +L
Sbjct: 304 GDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALL 363
Query: 173 SACTH 177
+AC+H
Sbjct: 364 NACSH 368
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 86/191 (45%), Gaps = 35/191 (18%)
Query: 21 QVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80
VD A F + + L+TAMIDG++ R + ++L+ M ++++ D + I S+L
Sbjct: 76 SVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLK 135
Query: 81 A-------RANLRALDLG---------EWIKTYIDKNKVKN-----------DIFAGNAL 113
A + + L LG + ++ Y ++ N D A +
Sbjct: 136 ACDLKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVM 195
Query: 114 IDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165
I+ Y C +++A KD WT MI GL + +KAL++F +M ++ +E
Sbjct: 196 INCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANE 255
Query: 166 VAYVGVLSACT 176
V VLSAC+
Sbjct: 256 FTAVCVLSACS 266
Score = 42.7 bits (99), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 11/169 (6%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+++ Y G ++ AR+ F M ++D + + MI G EA+ F++M
Sbjct: 295 ALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRP 354
Query: 71 DEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
++ T+V++L A ++ LD+G E + V+ I ++D+ +E+A
Sbjct: 355 NQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRF 414
Query: 127 ------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
+ D T++ I GN + + ++ L S PD YV
Sbjct: 415 IENIPIEPDHIMLGTLLSACKIHGNMELG-EKIAKRLFESENPDSGTYV 462
>gi|414873430|tpg|DAA51987.1| TPA: hypothetical protein ZEAMMB73_709752 [Zea mays]
Length = 536
Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats.
Identities = 74/189 (39%), Positives = 103/189 (54%), Gaps = 12/189 (6%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + +SW A+V +YI V A + F MP RD V W MI GY V RF EAL L
Sbjct: 183 MPVRSTVSWNAMVHQYIRHSNVGDAYELFLAMPRRDVVSWNTMIAGYSLVGRFMEALELS 242
Query: 61 QEMQTSN---IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
++M + + + + T+ ++L A A L+ G W+ ++D+N++ +D +LIDMY
Sbjct: 243 RQMISPSSCPVYPNGPTMSTVLAACAGAGCLETGIWVHAFVDRNRMNDDGSLDRSLIDMY 302
Query: 118 CICADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
C +EKA +D +SWTTMI GLA+ G AL MF M I PD+V
Sbjct: 303 VKCGSIEKALQVFEKAPEARDLYSWTTMICGLAMHGRAADALKMFGMMQDNGIHPDDVTL 362
Query: 169 VGVLSACTH 177
VGVL+AC H
Sbjct: 363 VGVLNACAH 371
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPE-RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+++ Y+ G ++ A Q F++ PE RD WT MI G R +AL +F MQ + I
Sbjct: 297 SLIDMYVKCGSIEKALQVFEKAPEARDLYSWTTMICGLAMHGRAADALKMFGMMQDNGIH 356
Query: 70 GDEFTIVSILTARANLRALDLG 91
D+ T+V +L A A+ +D G
Sbjct: 357 PDDVTLVGVLNACAHCGLVDEG 378
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 50/217 (23%), Positives = 84/217 (38%), Gaps = 51/217 (23%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++S Y G+ AR FD+MP+ V TAM + + +AL +F++M ++
Sbjct: 51 TALLSAYAALGRPRHARDLFDEMPDPGLVSRTAMARAHAASGQAAQALAVFRDMIADGVL 110
Query: 70 GDEFT---------IVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAG---------- 110
D + L A A G+ + I + + D+F
Sbjct: 111 PDNVALAVALAACHTTASLPAAGMAAARRPGKMVHAIIVTSGIVPDVFVSTELIRVYGEY 170
Query: 111 ---------------------NALIDMYCICADVEKA--------QKDKFSWTTMIVGLA 141
NA++ Y ++V A ++D SW TMI G +
Sbjct: 171 GELALSRRLFDAMPVRSTVSWNAMVHQYIRHSNVGDAYELFLAMPRRDVVSWNTMIAGYS 230
Query: 142 ISGNGDKALDMFSQMLRAS---IKPDEVAYVGVLSAC 175
+ G +AL++ QM+ S + P+ VL+AC
Sbjct: 231 LVGRFMEALELSRQMISPSSCPVYPNGPTMSTVLAAC 267
>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
Length = 695
Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats.
Identities = 71/182 (39%), Positives = 110/182 (60%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
++VI TA++ Y+ +D AR FD+MP RD V W+ MI GY + R E+L LF+ M
Sbjct: 338 QNVIVHTALMEMYVKCRAIDEARHEFDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERM 397
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ +N +E T+V +L+A A L + +LGE I YI+ + + G+ALIDMY C V
Sbjct: 398 KATNCKPNEVTLVGVLSACAQLGSDELGEQIGNYIESQTLPLTSYLGSALIDMYTKCGHV 457
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+A QK +W +MI GLA++G + A+ ++ +M+ I+P+EV +V +L+AC
Sbjct: 458 ARARSVFNRMEQKVVVTWNSMIRGLALNGFAEDAIALYRKMVGDGIQPNEVTFVALLTAC 517
Query: 176 TH 177
TH
Sbjct: 518 TH 519
Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 62/185 (33%), Positives = 97/185 (52%), Gaps = 9/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD I +++ Y G V+ AR+ FD MP R W +MI Y FREALTLF
Sbjct: 235 MPVKDPIPMNCLITGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLF 294
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M + TI ++ + A LD G + +I + ++N + AL++MY C
Sbjct: 295 DQMLREGASPNAITITTVFSICAKTGDLDTGRRARAWIREEDLQN-VIVHTALMEMYVKC 353
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+++A ++D +W+TMI G + +G ++L++F +M + KP+EV VGVL
Sbjct: 354 RAIDEARHEFDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVL 413
Query: 173 SACTH 177
SAC
Sbjct: 414 SACAQ 418
Score = 40.0 bits (92), Expect = 0.38, Method: Composition-based stats.
Identities = 42/190 (22%), Positives = 66/190 (34%), Gaps = 39/190 (20%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
AR FD +P L A + G +++ +E + + + I +L + A
Sbjct: 127 ARHLFDVVPRPTAALCCAFLSGLSKLSLHQEFIEVVSSLHRRGGAIPSGCIPLVLKSCAQ 186
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY-------------------------CI 119
A G + + D+F AL+D Y C+
Sbjct: 187 SAASCQGSQTHCHALVRGMLGDVFVQTALVDFYAKNGDMDSALMAFKEMPVKDPIPMNCL 246
Query: 120 ------CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165
DVE+A ++ SW +MI A G +AL +F QMLR P+
Sbjct: 247 ITGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQMLREGASPNA 306
Query: 166 VAYVGVLSAC 175
+ V S C
Sbjct: 307 ITITTVFSIC 316
>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DVI+W +++R + G + A + F +MPER+ WT+MI GY + + +EA+ LF
Sbjct: 174 MPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLF 233
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM+ + ++ +E T+V++L A A++ L LG I + +++ + +I N LIDMY C
Sbjct: 234 LEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKC 293
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E A ++ SW+ MI GLA G + AL +F++M+ +KP+ V ++G+L
Sbjct: 294 GCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGIL 353
Query: 173 SACTH 177
AC+H
Sbjct: 354 HACSH 358
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 83/190 (43%), Gaps = 39/190 (20%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A+ F + + W + + + +A++LF ++ +I D +T +L A +
Sbjct: 66 AKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSR 125
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--DKF----------- 131
L + G+ + Y++K +++++F N ++ +Y +C ++ A+K DK
Sbjct: 126 LLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIM 185
Query: 132 --------------------------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165
SWT+MI G A G +A+D+F +M A + P+E
Sbjct: 186 IARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNE 245
Query: 166 VAYVGVLSAC 175
V V VL AC
Sbjct: 246 VTVVAVLVAC 255
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
K++ ++ Y+ G ++ A + FD M ER V W+AMI G R +AL LF +M
Sbjct: 278 KNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKM 337
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLG 91
+ + + T + IL A +++ ++ G
Sbjct: 338 INTGVKPNAVTFIGILHACSHMGMVEKG 365
>gi|293332303|ref|NP_001170755.1| uncharacterized protein LOC100384848 [Zea mays]
gi|238007354|gb|ACR34712.1| unknown [Zea mays]
Length = 464
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 102/189 (53%), Gaps = 12/189 (6%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + +SW A+V +YI V A + F MP RD V W MI GY V RF EAL L
Sbjct: 111 MPVRSTVSWNAMVHQYIRHSNVGDAYELFLAMPRRDVVSWNTMIAGYSLVGRFMEALELS 170
Query: 61 QEM---QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
++M + + + T+ ++L A A L+ G W+ ++D+N++ +D +LIDMY
Sbjct: 171 RQMISPSSCPVYPNGPTMSTVLAACAGAGCLETGIWVHAFVDRNRMNDDGSLDRSLIDMY 230
Query: 118 CICADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
C +EKA +D +SWTTMI GLA+ G AL MF M I PD+V
Sbjct: 231 VKCGSIEKALQVFEKAPEARDLYSWTTMICGLAMHGRAADALKMFGMMQDNGIHPDDVTL 290
Query: 169 VGVLSACTH 177
VGVL+AC H
Sbjct: 291 VGVLNACAH 299
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPE-RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+++ Y+ G ++ A Q F++ PE RD WT MI G R +AL +F MQ + I
Sbjct: 225 SLIDMYVKCGSIEKALQVFEKAPEARDLYSWTTMICGLAMHGRAADALKMFGMMQDNGIH 284
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116
D+ T+V +L A A+ +D G ++K + I +ID+
Sbjct: 285 PDDVTLVGVLNACAHCGLVDEGLRHFYSLEKYAITPKIEHYGCVIDL 331
>gi|357508535|ref|XP_003624556.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499571|gb|AES80774.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 476
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 112/183 (61%), Gaps = 8/183 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ ++V+SWT +++ + G++D AR+ F+++P ++ V WTAMI+GY++ + +A LF
Sbjct: 180 MRVRNVVSWTTVIAGLVACGKLDTAREVFERIPSKNVVSWTAMINGYVKNDNPIKAFDLF 239
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M N+ +EFT+VS++ A +L +L LG + + KN + F G AL+DMY C
Sbjct: 240 ERMLIDNVRPNEFTLVSLIKACTDLGSLKLGRRMHDFALKNGFELGPFLGTALVDMYSKC 299
Query: 121 ADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ A K + +W TM+ + G G++ LD+F +M +A + PD + +VGVL
Sbjct: 300 GSLDAAVKVFGLMEVRNLATWNTMLTSFGVHGFGNEVLDLFKEMEKAGVVPDAITFVGVL 359
Query: 173 SAC 175
SAC
Sbjct: 360 SAC 362
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 81/197 (41%), Gaps = 40/197 (20%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G++D A FDQ+ + D W MI Y ++++ LF++M + D+FT ++
Sbjct: 66 GKIDYASLVFDQLNDPDIFTWNVMIRAYNTSGLPQKSIFLFKDMICCGFLPDKFTYPFVI 125
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY---------------------- 117
A +D G K +D++ N ++++Y
Sbjct: 126 NACIASGVIDFGRLTHGLAIKMGFWSDVYVQNNMMNLYFKIGGDVDDGWKVFDKMRVRNV 185
Query: 118 ----------CICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159
C ++ A+ K+ SWT MI G + N KA D+F +ML
Sbjct: 186 VSWTTVIAGLVACGKLDTAREVFERIPSKNVVSWTAMINGYVKNDNPIKAFDLFERMLID 245
Query: 160 SIKPDEVAYVGVLSACT 176
+++P+E V ++ ACT
Sbjct: 246 NVRPNEFTLVSLIKACT 262
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G +D A + F M R+ W M+ + E L LF+EM+ + ++
Sbjct: 290 TALVDMYSKCGSLDAAVKVFGLMEVRNLATWNTMLTSFGVHGFGNEVLDLFKEMEKAGVV 349
Query: 70 GDEFTIVSILTARANLRALDLGE 92
D T V +L+A + L+LG+
Sbjct: 350 PDAITFVGVLSACVQINDLELGQ 372
>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 583
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DVI+W +++R + G + A + F +MPER+ WT+MI GY + + +EA+ LF
Sbjct: 174 MPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLF 233
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM+ + ++ +E T+V++L A A++ L LG I + +++ + +I N LIDMY C
Sbjct: 234 LEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKC 293
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E A ++ SW+ MI GLA G + AL +F++M+ +KP+ V ++G+L
Sbjct: 294 GCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGIL 353
Query: 173 SACTH 177
AC+H
Sbjct: 354 HACSH 358
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 83/191 (43%), Gaps = 39/191 (20%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A+ F + + W + + + +A++LF ++ +I D +T +L A +
Sbjct: 66 AKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSR 125
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--DKF----------- 131
L + G+ + Y++K +++++F N ++ +Y +C ++ A+K DK
Sbjct: 126 LLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIM 185
Query: 132 --------------------------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165
SWT+MI G A G +A+D+F +M A + P+E
Sbjct: 186 IARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNE 245
Query: 166 VAYVGVLSACT 176
V V VL AC
Sbjct: 246 VTVVAVLVACA 256
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
K++ ++ Y+ G ++ A + FD M ER V W+AMI G R +AL LF +M
Sbjct: 278 KNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKM 337
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLG 91
+ + + T + IL A +++ ++ G
Sbjct: 338 INTGVKPNAVTFIGILHACSHMGMVEKG 365
>gi|414870414|tpg|DAA48971.1| TPA: selenium-binding protein-like protein [Zea mays]
Length = 611
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 73/185 (39%), Positives = 110/185 (59%), Gaps = 10/185 (5%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+D + T+++ Y NRG D AR+ FD+MP RD V W +I Y R R ++AL LF+EM
Sbjct: 168 RDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNRRTKDALKLFEEM 227
Query: 64 --QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
+ S D+ T + +L A ++L ALD GE + Y +++ ++ N+LI MY C
Sbjct: 228 RGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHGYGGELKVRNSLITMYLRCG 287
Query: 122 DVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
V+KA QK +WT MI GLA +G G+ A+ +F +M+R+ + PDE + GVLS
Sbjct: 288 CVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTGVLS 347
Query: 174 ACTHN 178
AC+H+
Sbjct: 348 ACSHS 352
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRF-REALTLFQEMQTSNIM 69
++++ Y+ G VD A + F P++ V WTAMI G L N F +A+++F+EM S++
Sbjct: 278 SLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISG-LAANGFGNDAISVFEEMIRSDVA 336
Query: 70 GDEFTIVSILTARANLRALDLG 91
DE T +L+A ++ +D G
Sbjct: 337 PDEQTFTGVLSACSHSGLVDEG 358
>gi|226530803|ref|NP_001148047.1| LOC100281656 [Zea mays]
gi|195615502|gb|ACG29581.1| selenium-binding protein-like [Zea mays]
Length = 597
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 73/185 (39%), Positives = 110/185 (59%), Gaps = 10/185 (5%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+D + T+++ Y NRG D AR+ FD+MP RD V W +I Y R R ++AL LF+EM
Sbjct: 154 RDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNRRTKDALKLFEEM 213
Query: 64 --QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
+ S D+ T + +L A ++L ALD GE + Y +++ ++ N+LI MY C
Sbjct: 214 RGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHGYGGELKVRNSLITMYLRCG 273
Query: 122 DVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
V+KA QK +WT MI GLA +G G+ A+ +F +M+R+ + PDE + GVLS
Sbjct: 274 CVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTGVLS 333
Query: 174 ACTHN 178
AC+H+
Sbjct: 334 ACSHS 338
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRF-REALTLFQEMQTSNIM 69
++++ Y+ G VD A + F P++ V WTAMI G L N F +A+++F+EM S++
Sbjct: 264 SLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISG-LAANGFGNDAISVFEEMIRSDVA 322
Query: 70 GDEFTIVSILTARANLRALDLG 91
DE T +L+A ++ +D G
Sbjct: 323 PDEQTFTGVLSACSHSGLVDEG 344
>gi|255550516|ref|XP_002516308.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544538|gb|EEF46055.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 599
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 116/188 (61%), Gaps = 11/188 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SWT++V Y ++D A + F +MP ++ V WT++I G+ + +AL LF
Sbjct: 160 MFERDVVSWTSMVDAYARASRMDDAFRLFMEMPVKNTVSWTSLIAGFAKNGHSYKALELF 219
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIF---AGNALIDMY 117
+MQ N++ FT V++L A A+L ++ G+ I +I ++ + D+F NALIDMY
Sbjct: 220 LQMQEENVLPSAFTFVTVLGACADLALIERGKQIHGHIIRSSGRTDLFNMYVYNALIDMY 279
Query: 118 CICADVEK--------AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
C C D++ ++KD SW ++I GLA +G+ +++LD+F +M+ + P+ V +
Sbjct: 280 CKCGDMKSSKSLFEGMSEKDIVSWNSLITGLAQNGHAEESLDLFRKMVEGNRLPNHVTFS 339
Query: 170 GVLSACTH 177
GVLSAC+H
Sbjct: 340 GVLSACSH 347
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 90/182 (49%), Gaps = 21/182 (11%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
K++ SW ++ Y G D AR FD+MPE + + + ++I G +L L +++
Sbjct: 71 KNIHSWNTMIGGYARVGLFDNARDLFDKMPEPNLISYNSLISG---------SLDLLRQV 121
Query: 64 QTSNIM-GDEFTIVSILTARANLRALDLGEWIKTY-IDKNKVKNDIFAGNALIDMYCICA 121
+ I+ G EF ++ + A + G+ +Y I + D+ + +++D Y +
Sbjct: 122 HGAAILIGLEFNVI-VYNALIDSYG-KCGQHNTSYCIFSRMFERDVVSWTSMVDAYARAS 179
Query: 122 DVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
++ A K+ SWT++I G A +G+ KAL++F QM ++ P +V VL
Sbjct: 180 RMDDAFRLFMEMPVKNTVSWTSLIAGFAKNGHSYKALELFLQMQEENVLPSAFTFVTVLG 239
Query: 174 AC 175
AC
Sbjct: 240 AC 241
Score = 40.4 bits (93), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 12/107 (11%)
Query: 76 VSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-------- 127
+S+ + + R L LG + +++ K + F N ++D+Y ++ AQ
Sbjct: 11 ISLFSKCISTRNLKLGLTLHSFLIKTALICSPFFSNRVMDLYSKFNVIDSAQKVFDDNPI 70
Query: 128 KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
K+ SW TMI G A G D A D+F +M +P+ ++Y ++S
Sbjct: 71 KNIHSWNTMIGGYARVGLFDNARDLFDKM----PEPNLISYNSLISG 113
>gi|225432514|ref|XP_002277532.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial [Vitis vinifera]
Length = 694
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 107/188 (56%), Gaps = 11/188 (5%)
Query: 1 MKNKD-VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTL 59
+ +KD V SW A++S ++ G ++ ARQ FD+MPERD W++MI GY + + AL L
Sbjct: 376 LGSKDHVSSWNALISGFVRNGMIEQARQLFDEMPERDVFSWSSMISGYSQNEQPDLALQL 435
Query: 60 FQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
F EM + +E T+VS+ +A A L L G W YI N + + ALIDMY
Sbjct: 436 FHEMVAGGVQPNEITMVSVFSAIATLGTLMEGRWAHEYILSNSIPLNDNLNAALIDMYAK 495
Query: 120 CADVEKAQ------KDKFS----WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
C + A +D+ S W +I GLA+ G+ + +L +FSQ+ R IKP+ + ++
Sbjct: 496 CGSITIALQLFYEIQDRVSSVSPWNAIICGLAMHGHANVSLKLFSQLQRVRIKPNSITFI 555
Query: 170 GVLSACTH 177
GVLSAC H
Sbjct: 556 GVLSACCH 563
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 97/213 (45%), Gaps = 39/213 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ ++V++W +++ Y G VD+AR F+++P +D V W +IDGY+++ R EAL ++
Sbjct: 245 IPERNVVTWNVMLNGYSKSGLVDLARDLFERIPAKDVVSWGTIIDGYVQIERLGEALRMY 304
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M + + +E IV +++A A+ G+ I + F +I Y C
Sbjct: 305 RSMLRTGVGPNEVMIVDLISACGRTMAVSEGQQFHGIIVRTGFDCYDFIQATIIHFYAAC 364
Query: 121 ADV---------------------------------------EKAQKDKFSWTTMIVGLA 141
++ E ++D FSW++MI G +
Sbjct: 365 GEINLAFLQFELGSKDHVSSWNALISGFVRNGMIEQARQLFDEMPERDVFSWSSMISGYS 424
Query: 142 ISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+ D AL +F +M+ ++P+E+ V V SA
Sbjct: 425 QNEQPDLALQLFHEMVAGGVQPNEITMVSVFSA 457
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 98/210 (46%), Gaps = 39/210 (18%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D +S +++ Y+ G +D AR F++MP + V +T M+ G + N + EA+ +F++M+
Sbjct: 117 DPVSCNIMLAGYVKSGSLDNARHLFEKMPIKGCVSYTTMVMGLAQNNCWLEAIGVFKDMR 176
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV- 123
+ ++ +E T+ S+++A +++ + + K ++ L+ MYC+C+ +
Sbjct: 177 FAGVIPNEVTLASVISAYSHVGGILNCRMLHALSFKLGLEALNIVATNLVHMYCVCSSLG 236
Query: 124 -------EKAQKDKFSWTTMIVGLAISGNGD----------------------------- 147
E +++ +W M+ G + SG D
Sbjct: 237 NARVLFDEIPERNVVTWNVMLNGYSKSGLVDLARDLFERIPAKDVVSWGTIIDGYVQIER 296
Query: 148 --KALDMFSQMLRASIKPDEVAYVGVLSAC 175
+AL M+ MLR + P+EV V ++SAC
Sbjct: 297 LGEALRMYRSMLRTGVGPNEVMIVDLISAC 326
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 39/145 (26%)
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ---- 127
E T+VS L + ++L AL G+ I + + K+ + ++IF N+LI Y C + A+
Sbjct: 52 ELTLVSALKSCSSLLALSQGQQIHSLVFKSGLLSNIFVKNSLISFYVKCRLISNARSLFD 111
Query: 128 -----------------------------------KDKFSWTTMIVGLAISGNGDKALDM 152
K S+TTM++GLA + +A+ +
Sbjct: 112 TCSVLDPVSCNIMLAGYVKSGSLDNARHLFEKMPIKGCVSYTTMVMGLAQNNCWLEAIGV 171
Query: 153 FSQMLRASIKPDEVAYVGVLSACTH 177
F M A + P+EV V+SA +H
Sbjct: 172 FKDMRFAGVIPNEVTLASVISAYSH 196
>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 828
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 109/185 (58%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NK V++W ++++ + G++++A + F +MPE + V W MI ++ + F EA+ L
Sbjct: 385 MSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLL 444
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ I GD T+V I +A L ALDL +WI TYI+KN + D+ G AL+DM+ C
Sbjct: 445 REMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRC 504
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
D A ++D +WT I A+ GN A+++F +ML+ +K D+ +V +L
Sbjct: 505 GDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFVFVALL 564
Query: 173 SACTH 177
+A +H
Sbjct: 565 TAFSH 569
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 101/182 (55%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD+ +++ Y G+VD+ R+ FD+M ER+ V WT++I+GY VN +EA+ LF EM
Sbjct: 155 KDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEM 214
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ + T+V ++A A L+ L+LG+ + + + VK++ NAL+DMY C D+
Sbjct: 215 VEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDM 274
Query: 124 EKAQK--DKFS------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
++ D+FS + T++ G + L + +ML+ +PD+V + ++AC
Sbjct: 275 YAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAAC 334
Query: 176 TH 177
Sbjct: 335 AQ 336
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 86/206 (41%), Gaps = 39/206 (18%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y+ G + R+ FD+ +++ V++ ++ Y++ E L + EM
Sbjct: 263 ALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRP 322
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK-- 128
D+ T++S + A A L L +G+ Y+ +N ++ NA+IDMY C E A K
Sbjct: 323 DKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVF 382
Query: 129 -------------------------------------DKFSWTTMIVGLAISGNGDKALD 151
+ SW TMI + + ++A+D
Sbjct: 383 DSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAID 442
Query: 152 MFSQMLRASIKPDEVAYVGVLSACTH 177
+ +M IK D V VG+ SAC +
Sbjct: 443 LLREMQNQGIKGDRVTMVGIASACGY 468
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 9/142 (6%)
Query: 43 MIDGYLRVNRFREALTLFQEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN 101
+I GY +EA+ ++ M I+ D FT +L+A + + A G + + K
Sbjct: 92 LIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVVKM 151
Query: 102 KVKNDIFAGNALIDMYCICADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMF 153
+ D+F N+LI Y C V E +++ SWT++I G ++ +A+ +F
Sbjct: 152 GLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLF 211
Query: 154 SQMLRASIKPDEVAYVGVLSAC 175
+M+ ++P+ V V +SAC
Sbjct: 212 FEMVEVGVEPNPVTMVCAISAC 233
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 27/167 (16%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V + G A + F+ M +RD WTA I + A+ LF EM ++
Sbjct: 495 TALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVK 554
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDK-NKVKNDIFAGNALIDMYCICADVEKAQK 128
D+F V++LTA ++ +D G + ++K + V I ++D+
Sbjct: 555 ADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHYGCMVDL------------ 602
Query: 129 DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
L +G ++A D+ M IKP++V + L+AC
Sbjct: 603 -----------LGRAGLLEEAFDLMKSM---PIKPNDVIWGSFLAAC 635
>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 110/177 (62%), Gaps = 9/177 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT-SNI 68
+A+V+ Y G + ARQ FDQ+ ++D W+A+I GY++ NR EAL LF+E+ SN+
Sbjct: 219 SALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNM 278
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ- 127
+E TI+++++A A L L+ G W+ YI + + + + N+LIDM+ C D++ A+
Sbjct: 279 RPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKR 338
Query: 128 -------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
KD SW +M+ GLA+ G G +AL F M ++PDE+ ++GVL+AC+H
Sbjct: 339 IFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSH 395
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 106/184 (57%), Gaps = 9/184 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + D+ T +++ Y G + AR F++M R+ V+WT+MI GY++ + EAL L+
Sbjct: 109 MLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLY 168
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++M+ DE T+ ++++A A L+ L +G + ++I + +K G+AL++MY C
Sbjct: 169 KKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKC 228
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGV 171
D++ A+ KD ++W+ +I G + +AL +F ++ S ++P+EV + V
Sbjct: 229 GDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAV 288
Query: 172 LSAC 175
+SAC
Sbjct: 289 ISAC 292
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 11/179 (6%)
Query: 8 SWTAIVSRYINRGQVDI--ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-Q 64
S +++ ++ G + + A F D + W +M+ ++ N R AL + EM +
Sbjct: 12 SLNKLIAHVLSMGSLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLE 71
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
S + D FT S+L A L +G+ + + K + +D++ L++MY C D++
Sbjct: 72 RSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLK 131
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
A ++K WT+MI G + ++AL ++ +M PDEV ++SAC
Sbjct: 132 SARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSAC 190
>gi|242082594|ref|XP_002441722.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
gi|241942415|gb|EES15560.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
Length = 528
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 103/186 (55%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD ++W +++ YI VD A FDQ+P R V WTA+I G+++ + AL LF
Sbjct: 174 MSLKDEVTWGSMLHGYIKCAGVDSALSFFDQVPVRSVVAWTALITGHVQGRQPVRALELF 233
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M TIV +L+A A++ ALDLG I Y K +I NAL+DMY
Sbjct: 234 GRMVLEGHRPTHVTIVGVLSACADIGALDLGRVIHGYGSKCNASLNIIVSNALMDMYAKS 293
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E A KD F+WTTMI + G+G KAL++F MLRA + P+ V +V VL
Sbjct: 294 GHIEMAFSVFQEVQSKDSFTWTTMISCCTVQGDGKKALELFQDMLRAGVVPNSVTFVSVL 353
Query: 173 SACTHN 178
SAC+H+
Sbjct: 354 SACSHS 359
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 89/200 (44%), Gaps = 39/200 (19%)
Query: 16 YINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTI 75
Y + G+V AR+ FD++P D + +T+++ +L+++ REA++LF + + D F +
Sbjct: 57 YADFGRVADARKLFDEIPNPDLISFTSLMSLHLQLDNQREAISLFARVVAAGHRPDGFAV 116
Query: 76 VSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--DKFS- 132
V L+A + +G + I + + ++ GNALIDMY C E A K D+ S
Sbjct: 117 VGALSASSGAGDQVVGRAVHGLIFRLGLDGEVVVGNALIDMYSQCGKFESAVKVFDRMSL 176
Query: 133 ------------------------------------WTTMIVGLAISGNGDKALDMFSQM 156
WT +I G +AL++F +M
Sbjct: 177 KDEVTWGSMLHGYIKCAGVDSALSFFDQVPVRSVVAWTALITGHVQGRQPVRALELFGRM 236
Query: 157 LRASIKPDEVAYVGVLSACT 176
+ +P V VGVLSAC
Sbjct: 237 VLEGHRPTHVTIVGVLSACA 256
>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D ++W ++++ RG +D A F +MP ++ WT+MI G+++ + EA+ LF
Sbjct: 71 MPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLF 130
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+++ + +E T+VS+L A A+L LDLG + Y K+ K ++ N LIDMY C
Sbjct: 131 MKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKC 190
Query: 121 ADVEKAQKDKF--------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E A++ + SW+ MI GLA+ G ++AL +FS+M++ +KP+ V ++G+L
Sbjct: 191 GCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLL 250
Query: 173 SACTH 177
AC+H
Sbjct: 251 HACSH 255
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 12/180 (6%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
++V ++ Y+ G ++ AR+ F +M ER V W+AMI G + EAL LF EM
Sbjct: 175 RNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEM 234
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ + T + +L A +++ +D G + + V I ++D++
Sbjct: 235 IKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGL 294
Query: 123 VEKAQKDKFS---------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+E+A + S W ++ G + N D A + + + + P Y V+S
Sbjct: 295 LEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHL--SELDPLNDGYYVVIS 352
>gi|354805242|gb|AER41656.1| CRR4 [Oryza rufipogon]
Length = 752
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 107/187 (57%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+SWTA+VS Y G +D A + FD MP ++ V W AMI GY +R+ EAL F
Sbjct: 272 MDQKDVVSWTAMVSAYAKIGDLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTF 331
Query: 61 QEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
Q M DE T+VS+++A A L +++ WI ++I K+ + + GNALIDM+
Sbjct: 332 QLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAK 391
Query: 120 CADVEKAQKDKF--------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C DV +AQ + +WTTMI G A +G AL +++ M R ++ D+ ++
Sbjct: 392 CGDVGRAQSIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAA 451
Query: 172 LSACTHN 178
L+AC H
Sbjct: 452 LAACAHG 458
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 85/184 (46%), Gaps = 17/184 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++DV+SW +IV Y++ G A F+ MPER+ V W ++ G+ R+ A +F
Sbjct: 179 MVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDMVTARAVF 238
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M + N + I T+ D+ E ++ D+ K D+ + A++ Y
Sbjct: 239 DRMPSRNAVSWNLMISGYATSG------DV-EAARSVFDRMDQK-DVVSWTAMVSAYAKI 290
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFS-QMLRASIKPDEVAYVGV 171
D++ A K+ SW MI G + D+AL F ML +PDE V V
Sbjct: 291 GDLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSV 350
Query: 172 LSAC 175
+SAC
Sbjct: 351 VSAC 354
>gi|354805213|gb|AER41630.1| CRR4 [Oryza nivara]
Length = 748
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 107/187 (57%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+SWTA+VS Y G +D A + FD MP ++ V W AMI GY +R+ EAL F
Sbjct: 268 MDQKDVVSWTAMVSAYAKIGDLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTF 327
Query: 61 QEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
Q M DE T+VS+++A A L +++ WI ++I K+ + + GNALIDM+
Sbjct: 328 QLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAK 387
Query: 120 CADVEKAQKDKF--------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C DV +AQ + +WTTMI G A +G AL +++ M R ++ D+ ++
Sbjct: 388 CGDVGRAQSIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAA 447
Query: 172 LSACTHN 178
L+AC H
Sbjct: 448 LAACAHG 454
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 85/184 (46%), Gaps = 17/184 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++DV+SW +IV Y++ G A F+ MPER+ V W ++ G+ R+ A +F
Sbjct: 175 MVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDMVTARAVF 234
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M + N + I T+ D+ E ++ D+ K D+ + A++ Y
Sbjct: 235 DRMPSRNAVSWNLMISGYATSG------DV-EAARSVFDRMDQK-DVVSWTAMVSAYAKI 286
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFS-QMLRASIKPDEVAYVGV 171
D++ A K+ SW MI G + D+AL F ML +PDE V V
Sbjct: 287 GDLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSV 346
Query: 172 LSAC 175
+SAC
Sbjct: 347 VSAC 350
>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 742
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 70/178 (39%), Positives = 102/178 (57%), Gaps = 8/178 (4%)
Query: 9 WTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI 68
W A++ Y G VDIAR FDQM + D + + ++I GY+ R REAL LF +M+ +
Sbjct: 307 WNAMIDGYCKVGHVDIARSLFDQMEDHDVITFNSLITGYIHGGRLREALLLFTKMRRHGL 366
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ- 127
D FT+V +LTA A+L AL G + I++ V+ D++ G AL+DMY C VE+A
Sbjct: 367 GADNFTMVGLLTASASLGALPQGRALHACIEQRLVERDVYLGTALLDMYMKCGRVEEAMV 426
Query: 128 -------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+D +W+ MI GLA +G G AL+ F M + V Y+ VL+AC+H+
Sbjct: 427 AFKQMSVRDVHTWSAMIGGLAFNGMGKAALEHFFWMKCDGFHANSVTYIAVLTACSHS 484
Score = 92.0 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 55/163 (33%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KDV++WT ++S G +D AR+ + P R+ V WT +I GY R R EA+ F M
Sbjct: 169 KDVVAWTTVISGLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSM 228
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYI-DKNKVKNDIFAGNALIDMYCICAD 122
+ I DE T++ +L+A L+ L+ G + + DK + +D ALIDMY C D
Sbjct: 229 LSDGIAPDEVTVIGMLSACGQLKDLNFGCSLHMLVGDKRMLMSDKLV-VALIDMYAKCGD 287
Query: 123 VEKAQ---------KDKFSWTTMIVGLAISGNGDKALDMFSQM 156
+A+ + W MI G G+ D A +F QM
Sbjct: 288 TGRAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQM 330
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 25/172 (14%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+DV TA++ Y+ G+V+ A F QM RD W+AMI G + AL F M
Sbjct: 403 RDVYLGTALLDMYMKCGRVEEAMVAFKQMSVRDVHTWSAMIGGLAFNGMGKAALEHFFWM 462
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ + T +++LTA ++ LD G + Y D+ ++ ++I
Sbjct: 463 KCDGFHANSVTYIAVLTACSHSCLLDEG---RLYFDEMRLLHNI---------------- 503
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ Q + + MI L SG D+A+D+ M ++P+ V + +LSAC
Sbjct: 504 -RPQIEHYG--CMIDLLGRSGLLDEAMDLVQTM---PMQPNAVIWASILSAC 549
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 128 KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
++ +WT +I G + +G +A+D F+ ML I PDEV +G+LSAC
Sbjct: 200 RNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVIGMLSAC 247
>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240 [Vitis vinifera]
Length = 565
Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 109/184 (59%), Gaps = 9/184 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N +VI TAIV Y G + AR F++MP R+ V W +MI Y + + EAL LF +
Sbjct: 245 NFNVILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFSD 304
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M+ + D+ T + ++ A A+L AL G+ + Y+ K + +D G AL+DMY D
Sbjct: 305 MRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTAIGTALVDMYAKSGD 364
Query: 123 VEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGVLS 173
E+AQ KD +WT++I+GLA+ G+G++AL F +M ++ PDE+ Y+GVLS
Sbjct: 365 AERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDTALIPDEITYIGVLS 424
Query: 174 ACTH 177
AC+H
Sbjct: 425 ACSH 428
Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 92/182 (50%), Gaps = 10/182 (5%)
Query: 4 KDVISWTAIV--SRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
+DVI + +V Y + G ++ A+ F+Q+ +W +MI GY EALT+++
Sbjct: 35 QDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLYIWNSMIKGYSISESPDEALTMYR 94
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
EM+ D FT +L A + + +LG+ + I K + D++A AL+ MY C
Sbjct: 95 EMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNCIVKTGFEVDVYAATALLQMYAACG 154
Query: 122 DVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
D+E A K + +WT++I G + +A+ ++ M S+ P+E+ V VL
Sbjct: 155 DMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKDMELWSVAPNEITMVNVLV 214
Query: 174 AC 175
AC
Sbjct: 215 AC 216
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 98/189 (51%), Gaps = 17/189 (8%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV + TA++ Y G ++ A + FD +P+ + V WT++I G + + EA+ ++++M+
Sbjct: 139 DVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKDME 198
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK--------NKVKNDIFAGNALIDM 116
++ +E T+V++L A A R L+ G W+ + N N I A A++DM
Sbjct: 199 LWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNFNVILA-TAIVDM 257
Query: 117 YCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
Y C ++ A ++ +W +MI G ++ALD+FS M A PD+ +
Sbjct: 258 YAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFSDMRIAGFDPDKATF 317
Query: 169 VGVLSACTH 177
+ V+ AC H
Sbjct: 318 LCVIGACAH 326
>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like, partial [Vitis vinifera]
Length = 599
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 107/182 (58%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+ V++WTA+++ ++ G++++A + F++MP ++ V W AMI GY+ + L LF+ M
Sbjct: 159 RSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRM 218
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
S + ++ S+L +NL AL LG+ + I K+ V +I AG +L+ MYC C D+
Sbjct: 219 VESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDL 278
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E A QKD +W MI G A G G+KAL +F +M +KPD + +V VLSAC
Sbjct: 279 EDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSAC 338
Query: 176 TH 177
H
Sbjct: 339 NH 340
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 16/184 (8%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ D+ S+ +++ Y++ V+ AR FDQMP +D W MI G+ + +A LF
Sbjct: 63 IPEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELF 122
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M N + ++++ LDL K + V++ + A A+I +
Sbjct: 123 LVMPVRN----SVSWNAMISGYVESGDLDLA---KQLFEVAPVRS-VVAWTAMITGFMKF 174
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E A+ K+ +W MI G + + L +F +M+ + +P+ + VL
Sbjct: 175 GKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVL 234
Query: 173 SACT 176
C+
Sbjct: 235 LGCS 238
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 30/177 (16%)
Query: 4 KDVISW-----TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALT 58
K +SW T+++S Y G ++ A + F MP++D V W AMI GY + +AL
Sbjct: 255 KSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALY 314
Query: 59 LFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC 118
LF +M+ + D T V++L+A + +DLG I N+++ Y
Sbjct: 315 LFDKMRDEGMKPDWITFVAVLSACNHAGFVDLG---------------IEYFNSMVRDYG 359
Query: 119 ICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ +A+ D + T +V L G G K ++ + + KP + +L AC
Sbjct: 360 V-----EAKPDHY---TCVVDLL--GRGGKLVEAVDLIKKMPFKPHSAIFGTLLGAC 406
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 48/164 (29%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYL-RVNRFREALTLF 60
K+ +VIS +++ +I G ++ A + F+ M + V W +M+ GY R + + A LF
Sbjct: 1 KSSNVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLF 60
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ + DIF+ N ++ Y
Sbjct: 61 DRIP---------------------------------------EPDIFSYNIMLACYLHN 81
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQM 156
ADVE A+ KD SW TMI G + +G D+A ++F M
Sbjct: 82 ADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLVM 125
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 106/178 (59%), Gaps = 10/178 (5%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ YI G+V+ A F+ + +D + W +I GY +N ++EAL LFQEM S
Sbjct: 260 ALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESP 319
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDK--NKVKNDIFAGNALIDMYCICADVEKAQ- 127
++ T++SIL A A+L A+++G WI YI+K V N +LIDMY C D+E AQ
Sbjct: 320 NDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQ 379
Query: 128 -------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+ SW MI G A+ G + A D+FS+M + I+PD++ +VG+LSAC+H+
Sbjct: 380 VFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHS 437
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 111/183 (60%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++DV+S+TA+++ Y ++G + A++ FD++P +D V W AMI GY +EAL LF+E
Sbjct: 151 HRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKE 210
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M +N+ DE T+VS+++A A +++LG + ++ID + +++ NALID+Y C +
Sbjct: 211 MMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGE 270
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
VE A KD SW T+I G +AL +F +MLR+ P++V + +L A
Sbjct: 271 VETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPA 330
Query: 175 CTH 177
C H
Sbjct: 331 CAH 333
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 39/189 (20%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88
F+ + E + ++W M G+ + AL L+ M + ++ + +T +L + A +A
Sbjct: 45 FETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAF 104
Query: 89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK-------------------- 128
G+ I ++ K D++ +LI MY +E A+K
Sbjct: 105 REGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGY 164
Query: 129 -------------------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
D SW MI G A +GN +AL++F +M++ +++PDE V
Sbjct: 165 ASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMV 224
Query: 170 GVLSACTHN 178
V+SAC +
Sbjct: 225 SVVSACAQS 233
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 25/166 (15%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T+++ Y G ++ A+Q FD + R W AMI G+ R A +F M+ + I
Sbjct: 362 TSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIE 421
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
D+ T V +L+A ++ LDLG I +K D Y I +E
Sbjct: 422 PDDITFVGLLSACSHSGMLDLGRHI-----FRSMKED----------YKITPKLEH---- 462
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ MI L SG +A +M + M ++PD V + +L AC
Sbjct: 463 ---YGCMIDLLGHSGLFKEAEEMINTM---EMEPDGVIWCSLLKAC 502
>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
cordifolium]
Length = 679
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 112/183 (61%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++DV+S+TA+++ Y +RG +D A++ FD++P +D V W AMI GY + R++EAL LF E
Sbjct: 141 HRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNE 200
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M ++ DE T+ ++L+ + ++LG I ++ID + +++ NALID+Y C +
Sbjct: 201 MMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGE 260
Query: 123 VEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+E+A KD SW T+I G A + +AL +F +ML+ P++V + +L A
Sbjct: 261 MERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPA 320
Query: 175 CTH 177
C H
Sbjct: 321 CAH 323
Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 102/178 (57%), Gaps = 12/178 (6%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G+++ A F+ + +D + W +I GY +N +EAL +FQEM
Sbjct: 250 ALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETP 309
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGN---ALIDMYCICADVEKA- 126
++ T++SIL A A+L A+D+G WI YIDK K+K I + +LIDMY C ++E A
Sbjct: 310 NDVTMLSILPACAHLGAIDIGRWIHVYIDK-KLKGIITNTSLQTSLIDMYAKCGNIEAAN 368
Query: 127 -------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
K S MI G A+ G D A D+ S+M + I+PD++ +VG+LSAC+H
Sbjct: 369 QVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSH 426
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 78/193 (40%), Gaps = 39/193 (20%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A F + E + + W MI G+ + AL L+ M + + + +T + + A
Sbjct: 31 AISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAK 90
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTM 136
+A G+ I I K + D+ +LI MY VE A K D S+T M
Sbjct: 91 SKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAM 150
Query: 137 IVGLAISGNGDKA-------------------------------LDMFSQMLRASIKPDE 165
I G A GN DKA L++F++M++ +KPDE
Sbjct: 151 ITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDE 210
Query: 166 VAYVGVLSACTHN 178
VLS CTH+
Sbjct: 211 STMATVLSTCTHS 223
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T+++ Y G ++ A Q FD + + AMI G+ R A L M+ I
Sbjct: 352 TSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIE 411
Query: 70 GDEFTIVSILTARANLRALDLGEWI 94
D+ T V +L+A ++ DLG I
Sbjct: 412 PDDITFVGLLSACSHAGLSDLGRKI 436
>gi|357146237|ref|XP_003573921.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 531
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 107/190 (56%), Gaps = 12/190 (6%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K I+W +V +Y+ ++ A + F MP RD V W +I GY V R +EAL LF
Sbjct: 177 MPTKSTIAWNTMVHQYVRNKDIEAAYRLFLAMPRRDVVSWNTVIAGYCLVGRCKEALGLF 236
Query: 61 QEM---QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
++M + + + T+ ++L+A A L+ G W+ YIDKN++ ++ LIDMY
Sbjct: 237 RQMVSPSSCTVHPNGPTMSTVLSACAGAGCLETGIWVHLYIDKNQMNDNGTLDRCLIDMY 296
Query: 118 CICADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
C ++KA ++D +SWTT+I GLA+ G + L MFS M + + PD+V +
Sbjct: 297 AKCGSIDKALQVFEKAPGKRDLYSWTTVICGLAMHGRANDVLRMFSMMQDSGMCPDDVTF 356
Query: 169 VGVLSACTHN 178
VGVL+AC H
Sbjct: 357 VGVLNACAHG 366
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 83/212 (39%), Gaps = 46/212 (21%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++S Y G+ AR FD+MP + V TAM + + +AL LFQ+M M
Sbjct: 50 TALLSAYGALGRSGHARDLFDEMPNQSLVARTAMARAHAVSGQAAQALDLFQDMIADGFM 109
Query: 70 GDEFTIVSILTARANLRAL----DLGEWIKTYIDKNKVKNDIF----------------- 108
D + +L A + G + +I ++ D+F
Sbjct: 110 PDNVALAVVLAACHGAGSCTARRSPGRMVHAFIVACGIEPDVFVSTELIRVYGERGEMTV 169
Query: 109 --------------AGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNG 146
A N ++ Y D+E A ++D SW T+I G + G
Sbjct: 170 ARRVFDSMPTKSTIAWNTMVHQYVRNKDIEAAYRLFLAMPRRDVVSWNTVIAGYCLVGRC 229
Query: 147 DKALDMFSQMLRAS---IKPDEVAYVGVLSAC 175
+AL +F QM+ S + P+ VLSAC
Sbjct: 230 KEALGLFRQMVSPSSCTVHPNGPTMSTVLSAC 261
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 12 IVSRYINRGQVDIARQCFDQMP-ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
++ Y G +D A Q F++ P +RD WT +I G R + L +F MQ S +
Sbjct: 292 LIDMYAKCGSIDKALQVFEKAPGKRDLYSWTTVICGLAMHGRANDVLRMFSMMQDSGMCP 351
Query: 71 DEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDM 116
D+ T V +L A A+ +D G + +K ++ I +ID+
Sbjct: 352 DDVTFVGVLNACAHGGLVDEGLHHFYSMQEKYRITPKIEHYGCMIDL 398
>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 595
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 104/188 (55%), Gaps = 10/188 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ +D +SW ++ YI G V A F MP ++ V WT++I G + + EAL+L
Sbjct: 149 IPERDAVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLC 208
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EMQ + D I S+LTA ANL ALD G W+ Y+ N V D G AL++MY C
Sbjct: 209 YEMQNAGFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKC 268
Query: 121 ADVEKA----------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
D+E+A QKD + WT MI G AI G G +AL+ F++M R I+P+ + +
Sbjct: 269 GDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTA 328
Query: 171 VLSACTHN 178
VL AC++
Sbjct: 329 VLRACSYG 336
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 83/196 (42%), Gaps = 39/196 (19%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G + A++ F+ + + +W A+I Y + A +Q+M +S++ + +T +L
Sbjct: 36 GDLLYAQRVFNGITSPNTFMWNAIIRAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLL 95
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ------------ 127
A NL A+ + + K +D+FA NAL+ +Y +C ++ A+
Sbjct: 96 RACRNLLAMGEALQVHGLVIKLGFGSDVFALNALLHVYALCGEIHCARQLFDNIPERDAV 155
Query: 128 ---------------------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS 160
K+ SWT++I GL +G +AL + +M A
Sbjct: 156 SWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAG 215
Query: 161 IKPDEVAYVGVLSACT 176
+ D VA +L+AC
Sbjct: 216 FELDGVAIASLLTACA 231
>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1182
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 111/184 (60%), Gaps = 9/184 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++D SW ++ Y+ G + +A++ FD+M ERD V W+ +I GY++V F EAL F +
Sbjct: 341 DRDFYSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHK 400
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M S + +E+T+VS L A +NL ALD G+WI YI ++ +K + +LIDMY C +
Sbjct: 401 MLQSEVKPNEYTMVSALAACSNLVALDQGKWIHVYIRRDNIKMNDRLLASLIDMYAKCGE 460
Query: 123 VE---------KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
++ K ++ + W MI G A+ G ++A+++F +M + P++V ++ +L+
Sbjct: 461 IDSASSVFHEHKVKRKVWPWNAMIGGFAMHGKPEEAINVFEKMKVEKVSPNKVTFIALLN 520
Query: 174 ACTH 177
AC+H
Sbjct: 521 ACSH 524
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 84/193 (43%), Gaps = 41/193 (21%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGY-LRVNRFREALTLFQEM-QTSNIMGDEFTIVSILTAR 82
A + FDQ+P+ D ++ MI + + + + +++ +F+ + + S + ++ V A
Sbjct: 229 AHKLFDQIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVFAFGAC 288
Query: 83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA---------------- 126
N + GE + T+ K + ++F NALI M+ VE A
Sbjct: 289 GNGMCVREGEQVFTHAVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSAVDRDFYSWN 348
Query: 127 -----------------------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKP 163
++D SW+T+I G G +ALD F +ML++ +KP
Sbjct: 349 TMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVKP 408
Query: 164 DEVAYVGVLSACT 176
+E V L+AC+
Sbjct: 409 NEYTMVSALAACS 421
>gi|354805181|gb|AER41600.1| CRR4 [Oryza glaberrima]
Length = 540
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 107/187 (57%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+SWTA+VS Y G +D A + FD MP ++ V W AMI GY +R+ EAL F
Sbjct: 171 MDQKDVVSWTAMVSAYAKIGDLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTF 230
Query: 61 QEMQTSN-IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
Q M DE T+VS+++A A L +++ WI ++I K+ + + GNALIDM+
Sbjct: 231 QLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAK 290
Query: 120 CADVEKAQKDKF--------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C DV +AQ + +WTTMI G A +G AL +++ M R ++ D+ ++
Sbjct: 291 CGDVGRAQSIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAA 350
Query: 172 LSACTHN 178
L+AC H
Sbjct: 351 LAACAHG 357
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 85/186 (45%), Gaps = 17/186 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++DV+SW +IV Y++ G A F+ MPER+ V W ++ G+ R+ A +F
Sbjct: 78 MVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDMVTAWAVF 137
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M + N + I T+ D+ E ++ D+ K D+ + A++ Y
Sbjct: 138 DRMPSRNAVSWNLMISGYATSG------DV-EAARSVFDRMDQK-DVVSWTAMVSAYAKI 189
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFS-QMLRASIKPDEVAYVGV 171
D++ A K+ SW MI G + D+AL F ML +PDE V V
Sbjct: 190 GDLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSV 249
Query: 172 LSACTH 177
+SAC
Sbjct: 250 VSACAQ 255
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 106/178 (59%), Gaps = 10/178 (5%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ YI G+V+ A F+ + +D + W +I GY +N ++EAL LFQEM S
Sbjct: 275 ALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESP 334
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDK--NKVKNDIFAGNALIDMYCICADVEKAQ- 127
++ T++SIL A A+L A+++G WI YI+K V N +LIDMY C D+E AQ
Sbjct: 335 NDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQ 394
Query: 128 -------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+ SW MI G A+ G + A D+FS+M + I+PD++ +VG+LSAC+H+
Sbjct: 395 VFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHS 452
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 111/183 (60%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++DV+S+TA+++ Y ++G + A++ FD++P +D V W AMI GY +EAL LF+E
Sbjct: 166 HRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKE 225
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M +N+ DE T+VS+++A A +++LG + ++ID + +++ NALID+Y C +
Sbjct: 226 MMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGE 285
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
VE A KD SW T+I G +AL +F +MLR+ P++V + +L A
Sbjct: 286 VETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPA 345
Query: 175 CTH 177
C H
Sbjct: 346 CAH 348
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 39/189 (20%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88
F+ + E + ++W M G+ + AL L+ M + ++ + +T +L + A +A
Sbjct: 60 FETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAF 119
Query: 89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK-------------------- 128
G+ I ++ K D++ +LI MY +E A+K
Sbjct: 120 REGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGY 179
Query: 129 -------------------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
D SW MI G A +GN +AL++F +M++ +++PDE V
Sbjct: 180 ASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMV 239
Query: 170 GVLSACTHN 178
V+SAC +
Sbjct: 240 SVVSACAQS 248
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 25/166 (15%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T+++ Y G ++ A+Q FD + R W AMI G+ R A +F M+ + I
Sbjct: 377 TSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIE 436
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
D+ T V +L+A ++ LDLG I +K D Y I +E
Sbjct: 437 PDDITFVGLLSACSHSGMLDLGRHI-----FRSMKED----------YKITPKLEH---- 477
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ MI L SG +A +M + M ++PD V + +L AC
Sbjct: 478 ---YGCMIDLLGHSGLFKEAEEMINTM---EMEPDGVIWCSLLKAC 517
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 107/185 (57%), Gaps = 9/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
++ DV+ A+V+ Y G V+ A + F++MP+++ V W A+I GY + EAL LF
Sbjct: 353 FESNDVVG-NALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALF 411
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EMQ I D F IVS+L A A+ AL+ G+ I Y ++ ++++ G L+D+Y C
Sbjct: 412 IEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKC 471
Query: 121 ADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+V AQK D SWTTMI+ I G+G+ AL +FS+M K D +A+ +L
Sbjct: 472 GNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAIL 531
Query: 173 SACTH 177
+AC+H
Sbjct: 532 TACSH 536
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 103/181 (56%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DVI TA+ S Y G ++ ARQ FD+MP+RD V W A+I GY + + EAL LF EMQ
Sbjct: 154 DVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQ 213
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ I + T+VS++ A+L AL+ G+ I Y ++ +++D+ N L++MY C +V
Sbjct: 214 VNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVN 273
Query: 125 KAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A K D SW +I G +++ +AL F++M IKP+ + V VL AC
Sbjct: 274 TAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACA 333
Query: 177 H 177
H
Sbjct: 334 H 334
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 98/181 (54%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+ +V+ Y G V+ A + F++MP RD W A+I GY ++ EAL F MQ
Sbjct: 255 DVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQ 314
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
I + T+VS+L A A+L AL+ G+ I Y ++ +++ GNAL++MY C +V
Sbjct: 315 VRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVN 374
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A +K+ +W +I G + G+ +AL +F +M IKPD A V VL AC
Sbjct: 375 SAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACA 434
Query: 177 H 177
H
Sbjct: 435 H 435
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 17/185 (9%)
Query: 10 TAIVSRYINRGQVDIARQ---CFDQMP------ERDYVLWTAMIDGYLRVNRFREALTLF 60
T+ V + R +V R+ C +Q + V+W I GY++ + +AL L+
Sbjct: 49 TSTVVAQLRRNKVKTTREVSACANQTQFTQTDIRNNAVVWKETIIGYVKNGFWNKALRLY 108
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+MQ + I D+ +S++ A + L G + I ++D+ G AL MY C
Sbjct: 109 YQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKC 168
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E A ++D SW +I G + +G +AL +FS+M IKP+ V V+
Sbjct: 169 GSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVM 228
Query: 173 SACTH 177
C H
Sbjct: 229 PVCAH 233
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 25/171 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+V+ T +V Y G V+ A++ F++MPE+D V WT MI Y +AL LF +MQ
Sbjct: 457 NVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQ 516
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ D +ILTA ++ +D G L C+ +D
Sbjct: 517 ETGTKLDHIAFTAILTACSHAGLVDQG---------------------LQYFQCMKSDYG 555
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
A K + + ++ L +G+ D+A + M S++PD + +L AC
Sbjct: 556 LAPKLE-HYACLVDLLGRAGHLDEANGIIKNM---SLEPDANVWGALLGAC 602
>gi|225450622|ref|XP_002278152.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09190
[Vitis vinifera]
Length = 485
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 106/186 (56%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++DVI W ++ + G +++ + F QM +R V W +MI G + R EAL LF
Sbjct: 168 MLDRDVIVWNMMIRGFCKVGDIEMGFRLFRQMRDRSVVSWNSMIAGLEQSGRDGEALELF 227
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKND-IFAGNALIDMYCI 119
+EM D+ T+V+IL A L A+D+GEWI +Y + +++ D I GN+L+D YC
Sbjct: 228 REMWDHGFEPDDATVVTILPVCARLGAVDVGEWIHSYAESSRLLRDFISVGNSLVDFYCK 287
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C +E A QK+ SW MI GL +G G+ D+F +M+ ++P++ +VGV
Sbjct: 288 CGILETAWRVFNEMPQKNVVSWNAMISGLTFNGKGELGADLFEEMINKGVRPNDATFVGV 347
Query: 172 LSACTH 177
LS C H
Sbjct: 348 LSCCAH 353
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 73/187 (39%), Gaps = 39/187 (20%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN---- 84
F Q + +L+ +MI GY +L LF +M+ I DEFT +L + +
Sbjct: 64 FHQTQNPNLLLFNSMIKGYSLCGPSENSLLLFSQMKNRGIWPDEFTFAPLLKSCSGICDN 123
Query: 85 ----------------------LRALDLGEWIKTYIDKNKV-----KNDIFAGNALIDMY 117
+ +DL D KV D+ N +I +
Sbjct: 124 RIGKGVHGVVIVVGFERFSSIRIGIIDLYTSCGRMEDAKKVFDEMLDRDVIVWNMMIRGF 183
Query: 118 CICADVE------KAQKDK--FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
C D+E + +D+ SW +MI GL SG +AL++F +M +PD+ V
Sbjct: 184 CKVGDIEMGFRLFRQMRDRSVVSWNSMIAGLEQSGRDGEALELFREMWDHGFEPDDATVV 243
Query: 170 GVLSACT 176
+L C
Sbjct: 244 TILPVCA 250
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 4 KDVIS-WTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+D IS ++V Y G ++ A + F++MP+++ V W AMI G + LF+E
Sbjct: 272 RDFISVGNSLVDFYCKCGILETAWRVFNEMPQKNVVSWNAMISGLTFNGKGELGADLFEE 331
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLG 91
M + ++ T V +L+ A+ ++ G
Sbjct: 332 MINKGVRPNDATFVGVLSCCAHAGLVERG 360
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 103/178 (57%), Gaps = 10/178 (5%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G+V+ A F + +D + W +I GY +N ++EAL LFQEM S
Sbjct: 236 ALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETP 295
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDK--NKVKNDIFAGNALIDMYCICADVEKA-- 126
++ T++S+L A A+L A+D+G WI YIDK V N +LIDMY C D+E A
Sbjct: 296 NDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQ 355
Query: 127 ------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
K SW MI G A+ G D + D+FS+M + I+PD++ +VG+LSAC+H+
Sbjct: 356 VFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHS 413
Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 111/183 (60%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++DV+S+TA+++ Y +RG + A++ FD++P +D V W AMI GY ++EAL LF+E
Sbjct: 127 HRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEE 186
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M N+ DE T V++L+A A+ +++LG + +++D + +++ NALID+Y C +
Sbjct: 187 MMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGE 246
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
VE A KD SW T+I G +AL +F +MLR+ P++V + VL A
Sbjct: 247 VETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPA 306
Query: 175 CTH 177
C H
Sbjct: 307 CAH 309
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 39/193 (20%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A F+ + E + ++W MI G+ + +LTL+ M + ++ + +T +L + A
Sbjct: 17 ATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAK 76
Query: 85 LR---------------ALDLGEWIKTYIDKNKVKN----------------DIFAGNAL 113
+ DL ++ T + V+N D+ + AL
Sbjct: 77 SKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTAL 136
Query: 114 IDMYCICADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165
I Y D+ AQK D SW MI G A +G +AL++F +M++ +++PDE
Sbjct: 137 ITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDE 196
Query: 166 VAYVGVLSACTHN 178
YV VLSAC H+
Sbjct: 197 STYVTVLSACAHS 209
>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 646
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 110/185 (59%), Gaps = 8/185 (4%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
++ +++ W ++ Y+ G AR FD+M +R V W MI GY F++A+ +F+
Sbjct: 204 RDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFR 263
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
EM+ +I + T+VS+L A + L +L+LGEW+ Y + + ++ D G+ALIDMY C
Sbjct: 264 EMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCG 323
Query: 122 DVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+EKA +++ +W+ MI G AI G A+D F +M +A ++P +VAY+ +L+
Sbjct: 324 IIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLT 383
Query: 174 ACTHN 178
AC+H
Sbjct: 384 ACSHG 388
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 85/216 (39%), Gaps = 56/216 (25%)
Query: 17 INRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFRE--ALTLFQEMQTSN-IMGDEF 73
++ +D A + F+QMP+R+ W +I G+ + + A+TLF EM + + + F
Sbjct: 70 LHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRF 129
Query: 74 TIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA------- 126
T S+L A A + G+ I K D F + L+ MY +C ++ A
Sbjct: 130 TFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKN 189
Query: 127 ----------------------------------------------QKDKFSWTTMIVGL 140
Q+ SW TMI G
Sbjct: 190 IIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGY 249
Query: 141 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+++G A+++F +M + I+P+ V V VL A +
Sbjct: 250 SLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAIS 285
>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 763
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 104/186 (55%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ SW +++ Y G + AR+ FD MP+RD V W A+I GY + + EAL +F
Sbjct: 320 MPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMF 379
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM+ + T L+ A++ AL+LG+ + + K + F GNAL+ MY C
Sbjct: 380 VEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKC 439
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++A +KD SW TMI G A G G +AL +F M +A +KPDE+ VGVL
Sbjct: 440 GSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVL 499
Query: 173 SACTHN 178
SAC+H+
Sbjct: 500 SACSHS 505
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 92/182 (50%), Gaps = 20/182 (10%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+SW A++S Y G VD AR+ F++MP R+ + W ++ Y+ R +EA LF
Sbjct: 134 MPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLF 193
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ ++ + + + N+ LG+ + D+ V+ D+ + N +I Y
Sbjct: 194 ESQSNWELI--SWNCLMGGYVKRNM----LGD-ARQLFDRMPVR-DVISWNTMISGYAQV 245
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
D+ +A+ +D F+WT M+ G +G D+A F +M +K +E++Y +L
Sbjct: 246 GDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEM---PVK-NEISYNAML 301
Query: 173 SA 174
+
Sbjct: 302 AG 303
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 76/173 (43%), Gaps = 31/173 (17%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+DV +WTA+VS Y+ G VD AR+ FD+MP ++ + + AM+ GY++ + A LF+ M
Sbjct: 261 RDVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAM 320
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
NI W T I I L DM
Sbjct: 321 PCRNI----------------------SSW-NTMITGYGQNGGIAQARKLFDMM------ 351
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
Q+D SW +I G A +G+ ++AL+MF +M R + + LS C
Sbjct: 352 --PQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCA 402
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 35/177 (19%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
K+ D+++W +S ++ G D A + F+ MP R V + AMI GYLR +F A LF
Sbjct: 42 KDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFD 101
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
+M ++ F+ +LT +R LGE + L D+
Sbjct: 102 KMPERDL----FSWNVMLTGY--VRNRRLGE-----------------AHKLFDLM---- 134
Query: 122 DVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+KD SW M+ G A +G D+A ++F++M + +++ G+L+A HN
Sbjct: 135 ----PKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHR----NSISWNGLLAAYVHN 183
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 13/160 (8%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
A++ Y G D A F+ + E+D V W MI GY R R+AL LF+ M+ + +
Sbjct: 430 NALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVK 489
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKN-KVKNDIFAGNALIDMYCICADVEKAQ- 127
DE T+V +L+A ++ +D G +D++ VK +ID+ +E+A+
Sbjct: 490 PDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAEN 549
Query: 128 --------KDKFSWTTMIVGLAISGN---GDKALDMFSQM 156
SW ++ I GN G+KA +M +M
Sbjct: 550 LMRNMPFDPGAASWGALLGASRIHGNTELGEKAAEMVFKM 589
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 35/188 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + +S+ A++S Y+ + +AR FD+MPERD W M+ GY+R R EA LF
Sbjct: 72 MPRRSSVSYNAMISGYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLF 131
Query: 61 QEMQTSNIMG--------------DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKN- 105
M +++ DE + + ++ + Y+ ++K
Sbjct: 132 DLMPKKDVVSWNAMLSGYAQNGFVDE--AREVFNKMPHRNSISWNGLLAAYVHNGRLKEA 189
Query: 106 ----------DIFAGNALIDMYC---ICADVEK-----AQKDKFSWTTMIVGLAISGNGD 147
++ + N L+ Y + D + +D SW TMI G A G+
Sbjct: 190 RRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLS 249
Query: 148 KALDMFSQ 155
+A +F++
Sbjct: 250 QAKRLFNE 257
>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
Length = 691
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 72/178 (40%), Positives = 102/178 (57%), Gaps = 10/178 (5%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A + Y G V+IA F+ + +D V W +I GY +N ++EAL LFQEM S
Sbjct: 256 AFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESP 315
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDK--NKVKNDIFAGNALIDMYCICADVEKA-- 126
++ T++S+L A A+L A+D+G WI YIDK V N +LIDMY C D+E A
Sbjct: 316 NDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQ 375
Query: 127 ------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
K SW MI G A+ G + A D+FS+M + I+PD++ VG+LSAC+H+
Sbjct: 376 VFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHS 433
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 73/183 (39%), Positives = 105/183 (57%), Gaps = 9/183 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+DV+S TA+++ Y +RG V AR+ FD + ERD V W AMI GY+ + EAL LF+EM
Sbjct: 147 RDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEM 206
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK-VKNDIFAGNALIDMYCICAD 122
+N+ DE T+VS+L+A A +++LG I T +D + + + NA I +Y C D
Sbjct: 207 MRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGD 266
Query: 123 VEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
VE A KD SW T+I G +AL +F +MLR+ P++V + VL A
Sbjct: 267 VEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPA 326
Query: 175 CTH 177
C H
Sbjct: 327 CAH 329
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 43/193 (22%), Positives = 76/193 (39%), Gaps = 39/193 (20%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A F+ E + ++W M+ G + L ++ M + + + +T +L + A
Sbjct: 36 AVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAK 95
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK---------------- 128
+ + G I + K + D +A +LI MY +E A+K
Sbjct: 96 SKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTAL 155
Query: 129 -----------------------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165
D SW MI G + ++AL++F +M+R +++PDE
Sbjct: 156 ITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDE 215
Query: 166 VAYVGVLSACTHN 178
V VLSAC +
Sbjct: 216 GTLVSVLSACAQS 228
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/174 (25%), Positives = 79/174 (45%), Gaps = 12/174 (6%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T+++ Y G ++ A Q F+ M + W AMI G+ R A LF M+ + I
Sbjct: 358 TSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIE 417
Query: 70 GDEFTIVSILTARANLRALDLGEWI-KTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
D+ T+V +L+A ++ LDLG I K+ + + +ID+ ++A++
Sbjct: 418 PDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEE 477
Query: 129 ---------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
D W +++ + GN + A + F+Q L I+P+ +LS
Sbjct: 478 IIHMMPMEPDGVIWCSLLKACKMHGNLELA-ESFAQKL-MEIEPENSGSYVLLS 529
>gi|224056897|ref|XP_002299078.1| predicted protein [Populus trichocarpa]
gi|222846336|gb|EEE83883.1| predicted protein [Populus trichocarpa]
Length = 488
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 103/183 (56%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++ ++ A++S Y+ G+VD AR+ FD M +D W+A+I GY + EAL LFQ+
Sbjct: 154 EENTLAKNAMISGYLTEGRVDKARKMFDDMAAKDAASWSALITGYTKNGMHTEALALFQD 213
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M S+I+ +E +VS+L+A L L G WI YIDK +V ALIDMY
Sbjct: 214 MMVSHILPNEAALVSLLSACGQLGTLHQGRWIHAYIDKTRVLMSTKLTTALIDMYAKSGS 273
Query: 123 VE--------KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+E A++D +W MI AI G+ K +F +ML I+P++V +V +LSA
Sbjct: 274 IECGYGLFQKMARRDVVTWGVMISAFAIHGHASKCFQLFDEMLADGIRPNKVIFVAILSA 333
Query: 175 CTH 177
C+H
Sbjct: 334 CSH 336
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 60/203 (29%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
++ Y+ Q+ A F+++P D ++ MI G LT+ D
Sbjct: 52 LLEAYVTMSQIYYAFSIFERIPSPDVFVYNTMIRG----------LTM-----------D 90
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--- 128
FT +L A ++L+A G+ + I K + D ++LI MY ++ A++
Sbjct: 91 NFTYTFVLKACSHLKAPFEGKQVHCQIIKAGIVPDTHIHSSLIHMYTNSGSIDDAERVLG 150
Query: 129 -----DKFSWTTMIVGLAISGNGDK-------------------------------ALDM 152
+ + MI G G DK AL +
Sbjct: 151 EFSEENTLAKNAMISGYLTEGRVDKARKMFDDMAAKDAASWSALITGYTKNGMHTEALAL 210
Query: 153 FSQMLRASIKPDEVAYVGVLSAC 175
F M+ + I P+E A V +LSAC
Sbjct: 211 FQDMMVSHILPNEAALVSLLSAC 233
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ Y G ++ F +M RD V W MI + + LF EM I
Sbjct: 262 TALIDMYAKSGSIECGYGLFQKMARRDVVTWGVMISAFAIHGHASKCFQLFDEMLADGIR 321
Query: 70 GDEFTIVSILTARANLRALDLG 91
++ V+IL+A ++ ++ G
Sbjct: 322 PNKVIFVAILSACSHAGCVEEG 343
>gi|242041125|ref|XP_002467957.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
gi|241921811|gb|EER94955.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
Length = 650
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 73/182 (40%), Positives = 110/182 (60%), Gaps = 9/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D SW +++S Y+ G+V+ A+ F+ MP++D V W+AMI G ++ N+ EALT+F M+
Sbjct: 334 DHFSWNSMISGYLKNGRVEDAKALFNVMPDKDNVSWSAMIAGCVQNNQSSEALTVFDNMR 393
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
I DE T+VS+++A NL AL+ G+ + YI + + I G +LIDMY C +E
Sbjct: 394 AHEIKPDEVTLVSVISACTNLCALEQGKLVHEYIRQYQYNITIVLGTSLIDMYMKCGCME 453
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIK-PDEVAYVGVLSAC 175
A +K W +IVGLA++G ++LDMFS+M + I P E+ + GVLSAC
Sbjct: 454 AALEVFDMVEEKGTPCWNAVIVGLAMNGLVTRSLDMFSEMETSGIAVPSEITFTGVLSAC 513
Query: 176 TH 177
H
Sbjct: 514 RH 515
Score = 92.8 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 63/216 (29%), Positives = 92/216 (42%), Gaps = 39/216 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + + +++V+ + G V+ AR FD RD WTAMI + R + F EAL +F
Sbjct: 198 MPERSAAAVSSMVALFARTGMVEEARGVFDGAEHRDAFTWTAMISCFERNDLFVEALAVF 257
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M+ DE +VS++ A A + GE + + + + + NALI MY C
Sbjct: 258 SDMREEGWPVDEAVMVSVVAACAKSEVIQNGEVCHGLVVRAGLGSRVNVQNALIHMYSSC 317
Query: 121 ADVEKAQ---------------------------------------KDKFSWTTMIVGLA 141
DV A+ KD SW+ MI G
Sbjct: 318 LDVVAARRLFDSSESLDHFSWNSMISGYLKNGRVEDAKALFNVMPDKDNVSWSAMIAGCV 377
Query: 142 ISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+ +AL +F M IKPDEV V V+SACT+
Sbjct: 378 QNNQSSEALTVFDNMRAHEIKPDEVTLVSVISACTN 413
Score = 40.4 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N ++ T+++ Y+ G ++ A + FD + E+ W A+I G +L +F E
Sbjct: 433 NITIVLGTSLIDMYMKCGCMEAALEVFDMVEEKGTPCWNAVIVGLAMNGLVTRSLDMFSE 492
Query: 63 MQTSNI-MGDEFTIVSILTA 81
M+TS I + E T +L+A
Sbjct: 493 METSGIAVPSEITFTGVLSA 512
>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
Length = 602
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 62/161 (38%), Positives = 99/161 (61%), Gaps = 8/161 (4%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
AR FD+MP+ V W+AMI GY+R +A+ LF+EMQ + + DE T++ +L A +
Sbjct: 183 ARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVELFREMQANGVQADEVTVIGVLAAATD 242
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTM 136
L AL+L W++ ++++ + + NALID C DV+ A Q+ SWT++
Sbjct: 243 LGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSV 302
Query: 137 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
I LA+ G G +A+ +F +M A + PD+VA++GVL+AC+H
Sbjct: 303 IDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSH 343
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 25/172 (14%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
K V A++ G VD A F+ M +R V WT++ID R +EA+ +F+EM
Sbjct: 263 KSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEM 322
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ + + D+ + +LTA ++ +D G Y D KV+ Y I +
Sbjct: 323 KVAGVPPDDVAFIGVLTACSHAGMVDEG---CGYFDAMKVE------------YGIEPKI 367
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E + M+ +G ++A++ M I+P+ V + ++SAC
Sbjct: 368 EH-------YGCMVDMFGRAGMVERAMEFVRTM---PIQPNPVIWRSLVSAC 409
>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
gi|194705708|gb|ACF86938.1| unknown [Zea mays]
gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
Length = 635
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 71/183 (38%), Positives = 99/183 (54%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ D + W+A+ Y G++D AR FD+MP RD V WTAM+D Y R E LF
Sbjct: 194 DADAVVWSALADMYAKFGRLDDARSVFDRMPVRDVVSWTAMLDRYFDAGRDGEGFRLFVR 253
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M S I+ +EFT +L A A + LG+ + + K++ + FAG+AL+ MY D
Sbjct: 254 MMRSGILPNEFTYAGVLRACAEFTSEKLGKQVHGRMAKSRTGDSCFAGSALVHMYSKYGD 313
Query: 123 VEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+ A + D SWT MI G A +G D+AL F +L + +PD V +VGVLSA
Sbjct: 314 MGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCFDMLLSSGFRPDHVTFVGVLSA 373
Query: 175 CTH 177
C H
Sbjct: 374 CAH 376
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 14/188 (7%)
Query: 1 MKNKDVISWTAIVSRYIN--RGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALT 58
+ + DV S+ +V+ RG AR FD+MP RD+ W+A++ ++R + R AL
Sbjct: 87 LPSTDVCSYNTLVAALGRSPRGLAS-ARALFDRMPRRDHFSWSAIVSAHVRHGQPRAALA 145
Query: 59 LFQEM---QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID 115
+++ M + +EFT S L A R G + ++ + + D +AL D
Sbjct: 146 IYRRMLREPGGSGADNEFTASSALAAATAARCARAGRELHCHVVRRGIDADAVVWSALAD 205
Query: 116 MYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 167
MY ++ A+ +D SWT M+ +G + +F +M+R+ I P+E
Sbjct: 206 MYAKFGRLDDARSVFDRMPVRDVVSWTAMLDRYFDAGRDGEGFRLFVRMMRSGILPNEFT 265
Query: 168 YVGVLSAC 175
Y GVL AC
Sbjct: 266 YAGVLRAC 273
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 10/146 (6%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+A+V Y G + A + F MP+ D V WTAMI GY + + EAL F + +S
Sbjct: 302 SALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCFDMLLSSGFR 361
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYI-DKNKVKNDIFAGNALIDMYCICADVEKAQK 128
D T V +L+A A+ +D G I I DK +++ +ID+ E+A+
Sbjct: 362 PDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACVIDLLSRSGLFERAED 421
Query: 129 ---------DKFSWTTMIVGLAISGN 145
+KF W +++ G I N
Sbjct: 422 MINTMPVKPNKFLWASLLGGCRIHKN 447
Score = 40.0 bits (92), Expect = 0.38, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPER----DYVLWTAMIDGYLRVNRFREA 56
M D++SWTA++S Y GQ D A CFD + D+V + ++ +
Sbjct: 324 MPKPDLVSWTAMISGYAQNGQPDEALHCFDMLLSSGFRPDHVTFVGVLSACAHAGLVDKG 383
Query: 57 LTLFQEMQTS---NIMGDEFTIVSILTARANL--RALDL 90
L +F ++ D + V L +R+ L RA D+
Sbjct: 384 LGIFHSIKDKYGIEHTADHYACVIDLLSRSGLFERAEDM 422
>gi|147811906|emb|CAN68178.1| hypothetical protein VITISV_000846 [Vitis vinifera]
Length = 633
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 110/187 (58%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+SW +++RYI G+++ A+ F +MPERD V W +MI GY+++ + AL LF
Sbjct: 211 MPGKNVVSWNMLIARYIRLGKIEDAKAVFQEMPERDAVSWNSMIAGYVQIKDYARALALF 270
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EM+ +N+ + T++S+L A A AL++G I + + + K + + NAL+DMY C
Sbjct: 271 REMEIANVEATDITLISVLGACAETGALEIGRKIHLSLKQREYKIEGYLSNALVDMYAKC 330
Query: 121 ADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA--SIKPDEVAYVG 170
+ E K W MIV LA+ G ++AL +FS M + +P+ V ++G
Sbjct: 331 GHLNLAWEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTMEMSVDGARPNRVTFIG 390
Query: 171 VLSACTH 177
VL AC+H
Sbjct: 391 VLIACSH 397
>gi|255542098|ref|XP_002512113.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549293|gb|EEF50782.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 336
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 106/181 (58%), Gaps = 8/181 (4%)
Query: 6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT 65
V+SWT ++S + G ++ AR FD P +D + AMI GY++ N F+E L +F +Q
Sbjct: 123 VVSWTLMISGFAKVGDIESARLFFDGAPRKDRGICGAMISGYVQNNCFKECLYMFSMIQL 182
Query: 66 SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV-- 123
++ + DE +SIL A A L ALD G WI Y+D+ + I LIDMY C +V
Sbjct: 183 TDNVPDEGIFLSILCACAQLGALDTGIWIHRYMDRLGLPLTIRLSTGLIDMYAKCGNVDL 242
Query: 124 ------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
E Q+D W MI GLA+ G+G+ A+++F +M A KPD+V ++ +LSAC++
Sbjct: 243 AKSLFDEMPQRDTVCWNVMISGLAMHGDGEGAINLFLKMEEAGFKPDDVTFIAILSACSY 302
Query: 178 N 178
+
Sbjct: 303 S 303
>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 602
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 62/161 (38%), Positives = 99/161 (61%), Gaps = 8/161 (4%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
AR FD+MP+ V W+AMI GY+R +A+ LF+EMQ + + DE T++ +L A +
Sbjct: 183 ARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVDLFREMQANGVQADEVTVIGVLAAATD 242
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTM 136
L AL+L W++ ++++ + + NALID C DV+ A Q+ SWT++
Sbjct: 243 LGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSV 302
Query: 137 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
I LA+ G G +A+ +F +M A + PD+VA++GVL+AC+H
Sbjct: 303 IDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSH 343
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 25/172 (14%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
K V A++ G VD A F+ M +R V WT++ID R +EA+ +F+EM
Sbjct: 263 KSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEM 322
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ + + D+ + +LTA ++ +D G Y D KV+ Y I +
Sbjct: 323 KVAGVPPDDVAFIGVLTACSHAGMVDEG---CGYFDAMKVE------------YGIEPKI 367
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E + M+ +G ++A++ M I+P+ V + ++SAC
Sbjct: 368 EH-------YGCMVDMFGRAGMVERAMEFVRTM---PIQPNPVIWRSLVSAC 409
>gi|356529553|ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 540
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 111/185 (60%), Gaps = 11/185 (5%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV++W ++V + G +D+A F +M R+ + W ++I G + +E+L LF EMQ
Sbjct: 191 DVVTWNSMVIGCLRNGGLDMAMDLFRKMNGRNIITWNSIITGLAQGGSAKESLELFHEMQ 250
Query: 65 TSN---IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
+ + D+ TI S+L+A A L A+D G+W+ Y+ +N ++ D+ G AL++MY C
Sbjct: 251 ILSDDMVKPDKITIASVLSACAQLGAIDHGKWVHGYLRRNGIECDVVIGTALVNMYGKCG 310
Query: 122 DVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
DV+KA +KD +WT MI A+ G G KA + F +M +A +KP+ V +VG+LS
Sbjct: 311 DVQKAFEIFEEMPEKDASAWTVMISVFALHGLGWKAFNCFLEMEKAGVKPNHVTFVGLLS 370
Query: 174 ACTHN 178
AC H+
Sbjct: 371 ACAHS 375
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 10/151 (6%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+ TA+V+ Y G V A + F++MPE+D WT MI + +A F EM+
Sbjct: 295 DVVIGTALVNMYGKCGDVQKAFEIFEEMPEKDASAWTVMISVFALHGLGWKAFNCFLEME 354
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWI-----KTYIDKNKVKN-----DIFAGNALI 114
+ + + T V +L+A A+ ++ G W + Y + +V + DI + L
Sbjct: 355 KAGVKPNHVTFVGLLSACAHSGLVEQGRWCFDVMKRVYSIEPQVYHYACMVDILSRARLF 414
Query: 115 DMYCICADVEKAQKDKFSWTTMIVGLAISGN 145
D I + D + W ++ G + GN
Sbjct: 415 DESEILIRSMPMKPDVYVWGALLGGCQMHGN 445
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 80/210 (38%), Gaps = 47/210 (22%)
Query: 13 VSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRV-----NRFREALTLFQEMQTSN 67
V + G A F + D + MI Y+ + F +AL L+++M +
Sbjct: 62 VCSFSYYGSFSYATNVFHMIKNPDLRAYNIMIRAYISMESGDDTHFCKALMLYKQMFCKD 121
Query: 68 IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127
I+ + T +L G+ I T + K D++ N+LI +Y + A+
Sbjct: 122 IVPNCLTFPFLLKGCTQWLDGATGQAIHTQVIKFGFLKDVYVANSLISLYMAGGLLSNAR 181
Query: 128 K------------------------------DKF---------SWTTMIVGLAISGNGDK 148
K D F +W ++I GLA G+ +
Sbjct: 182 KVFDEMLVTDVVTWNSMVIGCLRNGGLDMAMDLFRKMNGRNIITWNSIITGLAQGGSAKE 241
Query: 149 ALDMFSQMLRAS---IKPDEVAYVGVLSAC 175
+L++F +M S +KPD++ VLSAC
Sbjct: 242 SLELFHEMQILSDDMVKPDKITIASVLSAC 271
>gi|296082968|emb|CBI22269.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 106/191 (55%), Gaps = 18/191 (9%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ +++ Y G++ AR+ FD+MPERD V W ++DGY++ A LF++M
Sbjct: 149 DIFVPNSLIDSYFKLGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMP 208
Query: 65 TSNIMG----------DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALI 114
N++ D+ T++SIL+A A L LG+ + I++ + K NALI
Sbjct: 209 ARNVVSWSTMEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALI 268
Query: 115 DMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 166
DMY C +E A +KD SW +I GLA+ G+G+KAL +FS+M PD+V
Sbjct: 269 DMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKV 328
Query: 167 AYVGVLSACTH 177
+VGVL ACTH
Sbjct: 329 TFVGVLCACTH 339
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 84/173 (48%), Gaps = 18/173 (10%)
Query: 21 QVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80
Q+ +A F+Q+ + D +L+ +I ++R + A ++F EMQ S + D FT +L
Sbjct: 64 QMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLK 123
Query: 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKFS 132
A + + + E I ++K DIF N+LID Y ++ E ++D S
Sbjct: 124 ACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKLGELGEARRLFDEMPERDTVS 183
Query: 133 WTTMIVGLAISGNGDKALDMFSQM----------LRASIKPDEVAYVGVLSAC 175
W T++ G +G + A ++F +M + A +K D+ + +LSAC
Sbjct: 184 WNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMEAGLKFDDGTVISILSAC 236
>gi|226530385|ref|NP_001145846.1| CRR4 [Zea mays]
gi|219884683|gb|ACL52716.1| unknown [Zea mays]
gi|414878658|tpg|DAA55789.1| TPA: CRR4 [Zea mays]
Length = 601
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 68/182 (37%), Positives = 111/182 (60%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
++VI TA++ Y+ +D AR+ FD+MP RD V W+ MI GY R E+L LF+ M
Sbjct: 242 QNVIVHTALMEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERM 301
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ +N +E T+V +L+A A L + +LGE I +YI+ + + G+ALIDMY C V
Sbjct: 302 KATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHV 361
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+A QK +W +MI GLA++G + A+ ++ +M+ ++P+E+ ++ +L+AC
Sbjct: 362 ARARDVFHRMEQKVVIAWNSMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTAC 421
Query: 176 TH 177
TH
Sbjct: 422 TH 423
Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats.
Identities = 59/185 (31%), Positives = 97/185 (52%), Gaps = 9/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD I +++ Y G V+ AR+ FD MP + W +MI Y F+EALTLF
Sbjct: 139 MPIKDPIPMNCLITGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLF 198
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M + TI ++ + A L+ G K ++ + ++N + AL++MY C
Sbjct: 199 DQMLREGASPNAITITTVFSICAKTGDLETGRRAKAWVSEEDLQN-VIVHTALMEMYVKC 257
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+++A ++D +W+TMI G + +G ++L++F +M + KP+EV VGVL
Sbjct: 258 RAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVL 317
Query: 173 SACTH 177
SAC
Sbjct: 318 SACAQ 322
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 17/142 (11%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFQEMQTSNI 68
+A++ Y G V AR F +M ++ + W +MI G L +N F E A+ L+ EM +
Sbjct: 349 SALIDMYTKCGHVARARDVFHRMEQKVVIAWNSMIRG-LALNGFAEDAIALYGEMVGDGV 407
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNK--VKNDIFAGNALIDMYC-------- 118
+E T +++LTA + +D G + KNK + ++D+ C
Sbjct: 408 QPNEITFLALLTACTHAGLVDKGMAFFQEMKKNKQHASPQVEHCACIVDLLCKSGRLWEA 467
Query: 119 ---ICADVEKAQKDKFSWTTMI 137
IC D+E + + WTT++
Sbjct: 468 YKFIC-DME-VEPNAVIWTTLL 487
>gi|195651407|gb|ACG45171.1| CRR4 [Zea mays]
Length = 601
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 68/182 (37%), Positives = 111/182 (60%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
++VI TA++ Y+ +D AR+ FD+MP RD V W+ MI GY R E+L LF+ M
Sbjct: 242 QNVIVHTALMEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERM 301
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ +N +E T+V +L+A A L + +LGE I +YI+ + + G+ALIDMY C V
Sbjct: 302 KATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHV 361
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+A QK +W +MI GLA++G + A+ ++ +M+ ++P+E+ ++ +L+AC
Sbjct: 362 ARARDVFHRMEQKVVIAWNSMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTAC 421
Query: 176 TH 177
TH
Sbjct: 422 TH 423
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 59/185 (31%), Positives = 96/185 (51%), Gaps = 9/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD I ++ Y G V+ AR+ FD MP + W +MI Y F+EALTLF
Sbjct: 139 MPIKDPIPMNCLIIGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLF 198
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M + TI ++ + A L+ G K ++ + ++N + AL++MY C
Sbjct: 199 DQMLREGASPNAITITTVFSICAKTGDLETGRRAKAWVSEEDLQN-VIVHTALMEMYVKC 257
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+++A ++D +W+TMI G + +G ++L++F +M + KP+EV VGVL
Sbjct: 258 RAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVL 317
Query: 173 SACTH 177
SAC
Sbjct: 318 SACAQ 322
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 17/142 (11%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFQEMQTSNI 68
+A++ Y G V AR F +M ++ + W +MI G L +N F E A+ L+ EM +
Sbjct: 349 SALIDMYTKCGHVARARDVFHRMEQKVVIAWNSMIRG-LALNGFAEDAIALYGEMVGDGV 407
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNK--VKNDIFAGNALIDMYC-------- 118
+E T +++LTA + +D G + KNK + ++D+ C
Sbjct: 408 QPNEITFLALLTACTHAGLVDKGMAFFQEMKKNKQHASPQVEHCACIVDLLCKSGRLWEA 467
Query: 119 ---ICADVEKAQKDKFSWTTMI 137
IC D+E + + WTT++
Sbjct: 468 YKFIC-DME-VEPNAVIWTTLL 487
>gi|293336578|ref|NP_001168380.1| uncharacterized protein LOC100382149 [Zea mays]
gi|223947871|gb|ACN28019.1| unknown [Zea mays]
gi|413955892|gb|AFW88541.1| hypothetical protein ZEAMMB73_254585 [Zea mays]
Length = 651
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 72/182 (39%), Positives = 109/182 (59%), Gaps = 9/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D SW +++S Y+ G+V+ A+ FD MP++D V W+AMI G + N+ EAL +F M+
Sbjct: 334 DHFSWNSMISGYLKNGRVEDAKALFDVMPDKDNVSWSAMIAGCVHNNQSSEALNVFDSMR 393
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
I D+ T+VS+++A +NL AL+ G+ + YI K + I G +LIDMY C +E
Sbjct: 394 AHEIKPDDVTLVSVISACSNLSALEQGKLVHEYIRKYQYNITIVLGTSLIDMYMKCGCME 453
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGVLSAC 175
A +K W +IVGLA++G ++LDMFS+M + P+E+ + GVLSAC
Sbjct: 454 AALEVFDMLEEKGTPCWNAVIVGLAMNGLVTRSLDMFSEMEATGTAVPNEITFTGVLSAC 513
Query: 176 TH 177
H
Sbjct: 514 RH 515
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 63/243 (25%), Positives = 95/243 (39%), Gaps = 70/243 (28%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPER----------------------------- 35
D +SW I++ Y+ G V+ A + F +MPER
Sbjct: 171 DAVSWNTILATYVRDGDVEQAVKVFTRMPERSAAAVSAMVALFARRGMVEEARGVFDGAE 230
Query: 36 --DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEW 93
D WTAM+ + R + F EAL +F +M+ DE +VS++ A A + GE
Sbjct: 231 HRDAFTWTAMVSCFERNDLFMEALAVFSDMREEGWPVDEAVMVSVVAACAKSGVIQNGEV 290
Query: 94 IKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-------------------------- 127
+ + + + + N LI MY C DV A+
Sbjct: 291 CHGLVVRAGLGSRVNVQNVLIHMYSSCQDVVAARRLFDNGESLDHFSWNSMISGYLKNGR 350
Query: 128 -------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
KD SW+ MI G + +AL++F M IKPD+V V V+SA
Sbjct: 351 VEDAKALFDVMPDKDNVSWSAMIAGCVHNNQSSEALNVFDSMRAHEIKPDDVTLVSVISA 410
Query: 175 CTH 177
C++
Sbjct: 411 CSN 413
Score = 38.1 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 38/175 (21%), Positives = 74/175 (42%), Gaps = 28/175 (16%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N ++ T+++ Y+ G ++ A + FD + E+ W A+I G +L +F E
Sbjct: 433 NITIVLGTSLIDMYMKCGCMEAALEVFDMLEEKGTPCWNAVIVGLAMNGLVTRSLDMFSE 492
Query: 63 MQ-TSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M+ T + +E T +L+A + ++ G ++ K +K ++ +I ++D+
Sbjct: 493 MEATGTAVPNEITFTGVLSACRHGGLVEEGRQFFKLMQNKYQIVPNIRHYGCMVDL---- 548
Query: 121 ADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
L +G +A DM M + PD A+ +L AC
Sbjct: 549 -------------------LGRAGYVREAEDMIQSM---PMSPDVPAWGALLGAC 581
>gi|224120036|ref|XP_002318226.1| predicted protein [Populus trichocarpa]
gi|222858899|gb|EEE96446.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 110/186 (59%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+VISWT+++ Y + ++ AR F+ MP+R+ V W +MI Y + +F E+L LF
Sbjct: 188 MPEKNVISWTSMIGAYADTDDLETARSFFETMPQRNVVSWNSMISSYAKHGKFVESLNLF 247
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+MQ+ + D +T VS+L+A +NL L+ G++I Y+ + ++++ G AL +MY C
Sbjct: 248 VQMQSEGVTPDGYTFVSVLSACSNLGDLEFGKYIH-YLSGDLSQSEVMVGTALTEMYAQC 306
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
DV+KA ++D F W +I LA+ G ++A+ +F M + +KP++ + L
Sbjct: 307 GDVDKAFAVFIKIGKRDVFCWNVIIKALALHGRSEEAIKIFLLMRKTGLKPNDFTFTSAL 366
Query: 173 SACTHN 178
AC+H
Sbjct: 367 FACSHG 372
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 31/169 (18%)
Query: 9 WTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI 68
W ++ +Y+N G V AR+ FD MPERD V W +MI GY + + A LF++M N+
Sbjct: 134 WNQMIGKYVNIGDVKSARELFDIMPERDIVSWNSMILGYAKGGKVANARGLFEKMPEKNV 193
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
+ + S++ A A+ L E +++ + Q+
Sbjct: 194 I----SWTSMIGAYADTDDL---ETARSFFET------------------------MPQR 222
Query: 129 DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+ SW +MI A G ++L++F QM + PD +V VLSAC++
Sbjct: 223 NVVSWNSMISSYAKHGKFVESLNLFVQMQSEGVTPDGYTFVSVLSACSN 271
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 10/155 (6%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ +V+ TA+ Y G VD A F ++ +RD W +I R EA+ +F
Sbjct: 288 LSQSEVMVGTALTEMYAQCGDVDKAFAVFIKIGKRDVFCWNVIIKALALHGRSEEAIKIF 347
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN-KVKNDIFAGNALIDMYCI 119
M+ + + ++FT S L A ++ ++ G I ++K+ K+ I LIDM C
Sbjct: 348 LLMRKTGLKPNDFTFTSALFACSHGGLVEEGHIIFNSMEKDYKIIPKITHYGCLIDMLCR 407
Query: 120 CADVEKA---------QKDKFSWTTMIVGLAISGN 145
+E+A Q D W ++ G ++G+
Sbjct: 408 NGQLEEAMLLVEDMPFQPDVAIWGALLGGCRVTGD 442
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 22 VDIARQCFDQM---PERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSI 78
+D + F QM + V+W AMI GY F+E + +F EM + FT +
Sbjct: 1 MDYSNLIFSQMGHDSSAEIVIWNAMIRGYAFNGPFQECIRMFDEMPQRGLKPHNFTYPYV 60
Query: 79 LTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
+ + L G+ + I K+ ++ N+L +MY
Sbjct: 61 INSCCELEWYGRGKRVHCEIVKSGFESSYAVANSLFNMY 99
>gi|255583218|ref|XP_002532374.1| basic helix-loop-helix-containing protein, putative [Ricinus
communis]
gi|223527930|gb|EEF30017.1| basic helix-loop-helix-containing protein, putative [Ricinus
communis]
Length = 310
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 109/185 (58%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+ +W ++ Y ++ A F QM ERD + WT M++ Y + +F EAL +F
Sbjct: 102 MPEKNTAAWNTLIYGYSKLRDLESAEFLFSQMHERDIISWTTMVNCYAQNKKFGEALVVF 161
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M + I DE T+ ++++A A+L ALDLG+ I Y+ +N D++ G++LIDMY C
Sbjct: 162 NQMIKTGICPDEVTMATVISACAHLGALDLGKEIHLYVMQNGFDLDVYIGSSLIDMYAKC 221
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++++ +K+ F W ++I GLA G +AL+MF +M R IKP+ V ++ VL
Sbjct: 222 GSLDRSLLVFFKLQEKNLFCWNSVIEGLAAHGYAKEALEMFRKMGREKIKPNGVTFISVL 281
Query: 173 SACTH 177
+AC H
Sbjct: 282 NACAH 286
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 31/173 (17%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
V TA+V Y G++ +++ FD+MPERD W M+ R+ A LF M
Sbjct: 44 HVFVQTALVDFYSTVGRIIESKKVFDEMPERDIFAWATMVTSLARIGDMSSARRLFDMMP 103
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
N +++ + LR L+ E++ + +
Sbjct: 104 EKNTAAWN----TLIYGYSKLRDLESAEFLFSQMH------------------------- 134
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
++D SWTTM+ A + +AL +F+QM++ I PDEV V+SAC H
Sbjct: 135 --ERDIISWTTMVNCYAQNKKFGEALVVFNQMIKTGICPDEVTMATVISACAH 185
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M S I+ +T S++ A + GE + ++ ++ +++ +F AL+D Y
Sbjct: 1 MLRSKILPSSYTFSSLIKACGLASEVKFGEVVHGHVWRHGLESHVFVQTALVDFYSTVGR 60
Query: 123 V--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
+ E ++D F+W TM+ LA G+ A +F M
Sbjct: 61 IIESKKVFDEMPERDIFAWATMVTSLARIGDMSSARRLFDMM 102
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 45/87 (51%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV ++++ Y G +D + F ++ E++ W ++I+G +EAL +F++M
Sbjct: 207 DVYIGSSLIDMYAKCGSLDRSLLVFFKLQEKNLFCWNSVIEGLAAHGYAKEALEMFRKMG 266
Query: 65 TSNIMGDEFTIVSILTARANLRALDLG 91
I + T +S+L A A+ ++ G
Sbjct: 267 REKIKPNGVTFISVLNACAHAGLVEEG 293
>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
Length = 553
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 109/186 (58%), Gaps = 10/186 (5%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVL--WTAMIDGYLRVNRFREALTL 59
+ + + ++V Y+ +D A + F++M ERD + WTA++ GY R+ + +AL
Sbjct: 193 QKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIVSGYARIGCYADALEF 252
Query: 60 FQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
F+ MQ I DE ++VS+L A L AL+LG+WI Y DK +I NALI+MY
Sbjct: 253 FRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAK 312
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C +++ ++D SW+TMIVGLA G +A+++F +M +A I+P + +VG+
Sbjct: 313 CGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGL 372
Query: 172 LSACTH 177
L+AC H
Sbjct: 373 LTACAH 378
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 82/172 (47%), Gaps = 25/172 (14%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+++ A++ Y G +D R+ FDQM ERD + W+ MI G R REA+ LFQEM
Sbjct: 298 RNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEM 357
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
Q + I T V +LTA A+ L+ G Y + K +I G V
Sbjct: 358 QKAKIEPSIITFVGLLTACAHAGLLNEG---LRYFESMKRDYNIEPG------------V 402
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E + ++ L +SG D+AL++ +M R KPD + +LS+C
Sbjct: 403 EH-------YGCLVNLLGLSGRLDQALELVKKMPR---KPDSPIWGSLLSSC 444
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 15/172 (8%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-----QTSNIMGDEFT 74
G+ + A F + + + L+ AMI Y + A+T++++M + I D+FT
Sbjct: 105 GETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFT 164
Query: 75 IVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK------ 128
++ + A L DLG+ + ++ K K++ N+L++MY C ++ A +
Sbjct: 165 FPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMT 224
Query: 129 ----DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
FSWT ++ G A G AL+ F +M I+PDE++ V VL C
Sbjct: 225 ERDATIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCA 276
>gi|357142551|ref|XP_003572610.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Brachypodium distachyon]
Length = 454
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 103/185 (55%), Gaps = 11/185 (5%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV SW +VS Y G + AR+ F +MP R+ V W+AMID + F EAL++F +M
Sbjct: 141 DVASWNTMVSGYGKSGDLAAAREVFGRMPGRNLVSWSAMIDALVHAEEFGEALSVFDQMM 200
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV---KNDIFAGNALIDMYCICA 121
D +VS+L A A+L A+ G W Y++ + ++ AL+DMYC C
Sbjct: 201 REGFKPDVVVLVSMLKACAHLGAVKRGRWAHQYLETEGFAGRQRNVMVETALVDMYCKCG 260
Query: 122 DVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+E+A +D W +MI GLA++G+GD+AL++F +ML+ P++ + G L
Sbjct: 261 CMEEAWCVFDGVRYRDVVLWNSMIGGLAMNGHGDRALELFQRMLQEGFVPNQSTFAGALC 320
Query: 174 ACTHN 178
ACTH
Sbjct: 321 ACTHT 325
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
+ ++V+ TA+V Y G ++ A FD + RD VLW +MI G AL LFQ
Sbjct: 242 RQRNVMVETALVDMYCKCGCMEEAWCVFDGVRYRDVVLWNSMIGGLAMNGHGDRALELFQ 301
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWI 94
M + ++ T L A + +D G I
Sbjct: 302 RMLQEGFVPNQSTFAGALCACTHTGHVDEGREI 334
>gi|212723118|ref|NP_001131685.1| hypothetical protein [Zea mays]
gi|194692242|gb|ACF80205.1| unknown [Zea mays]
gi|414879040|tpg|DAA56171.1| TPA: hypothetical protein ZEAMMB73_730680 [Zea mays]
Length = 590
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 77/218 (35%), Positives = 110/218 (50%), Gaps = 41/218 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQ--VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALT 58
M KD SW ++ Y +G VD AR+ FDQMPERD V W +MIDGY R R EA +
Sbjct: 207 MPQKDTFSWATLIDGYGKQGGAGVDRARELFDQMPERDLVCWNSMIDGYARHGRMDEARS 266
Query: 59 LFQEMQTSNIMG-------------------------------DEFTIVSILTARANLRA 87
LF+EM N++ D V ++A A L A
Sbjct: 267 LFEEMPERNVISWSIVIDGHVSCGEAKEALEYFQSMLRCGLRPDRIAAVGAVSACAQLGA 326
Query: 88 LDLGEWIKTYIDKNKVKNDIFAGNALIDMY--CICADV------EKAQKDKFSWTTMIVG 139
L+ G W+ +Y++K K+ +D+ ALIDMY C C D+ A++ +W MIVG
Sbjct: 327 LEQGRWLHSYLEKKKLLSDVVVQTALIDMYVKCGCLDLAMLIFESMAERSVVTWNVMIVG 386
Query: 140 LAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
L G G A+ +F +M S+ D+++ +G+L+ACTH
Sbjct: 387 LGTHGFGLDAVTLFHRMEAESVAVDDLSVLGMLTACTH 424
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 57/146 (39%), Gaps = 14/146 (9%)
Query: 24 IARQCFDQMP---ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80
+A F ++P RD W I + R R AL F M+ + D +T ++L
Sbjct: 63 LADVVFARLPLPAARDPFAWNTAIRLHAPA-RPRAALLYFARMRRCGVRPDAYTFPAVLK 121
Query: 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK----------DK 130
A G + + + D+F NALI YC D+ +K D
Sbjct: 122 ACGCAPGCRAGLLVHAEAVRRGLAADLFTVNALISFYCRILDIRSGRKVFDEAGGVSRDL 181
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQM 156
SW +M+ G G A +MF +M
Sbjct: 182 VSWNSMVAGYVGCGEMGLAQEMFDEM 207
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 54 REALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNAL 113
R L + E + D FT+ ++++ R LD+ K + + V D+ + N++
Sbjct: 130 RAGLLVHAEAVRRGLAADLFTVNALISFYC--RILDIRSGRKVFDEAGGVSRDLVSWNSM 187
Query: 114 IDMYCICADV--------EKAQKDKFSWTTMIVGLAISGNG--DKALDMFSQM 156
+ Y C ++ E QKD FSW T+I G G D+A ++F QM
Sbjct: 188 VAGYVGCGEMGLAQEMFDEMPQKDTFSWATLIDGYGKQGGAGVDRARELFDQM 240
>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
Length = 736
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 105/177 (59%), Gaps = 10/177 (5%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
++ Y+ G ++ A F+++ +++ V W MI GY ++ ++EAL LF+ M SNI
Sbjct: 301 GLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDP 360
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKN--KVKNDIFAGNALIDMYCICADVEKAQ- 127
++ T +SIL A ANL ALDLG+W+ Y+DKN +KN + +LIDMY C D+ A+
Sbjct: 361 NDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKR 420
Query: 128 -------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
K +W MI G A+ G+ D AL +FS+M PD++ +VGVL+AC H
Sbjct: 421 IFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKH 477
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 111/181 (61%), Gaps = 9/181 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+D +S+TA+++ Y ++G +D AR+ FD++P RD V W AMI GY + R EA+ F+EM
Sbjct: 192 RDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEM 251
Query: 64 QTSNIMGDEFTIVSILTARANL-RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ + + + T++S+L+A A +L LG W++++I+ + ++I N LIDMY C D
Sbjct: 252 RRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGD 311
Query: 123 VEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+E+A K+ SW MI G +AL +F +M++++I P++V ++ +L A
Sbjct: 312 LEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPA 371
Query: 175 C 175
C
Sbjct: 372 C 372
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 77/196 (39%), Gaps = 39/196 (19%)
Query: 19 RGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSI 78
G + A F + ++V+W MI G AL + M +S +E+T SI
Sbjct: 75 HGDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSI 134
Query: 79 LTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------- 127
+ +R G+ + ++ K ++++ F +LI+MY ++ A+
Sbjct: 135 FKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDA 194
Query: 128 ----------------------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159
+D SW MI G A SG ++A+ F +M RA
Sbjct: 195 VSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRA 254
Query: 160 SIKPDEVAYVGVLSAC 175
+ P+ + VLSAC
Sbjct: 255 KVTPNVSTMLSVLSAC 270
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MKN V WT+++ Y G + +A++ FD M + W AMI G+ AL LF
Sbjct: 395 MKNT-VALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLF 453
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMY 117
M + + D+ T V +LTA + L LG + + I KV + +ID++
Sbjct: 454 SRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLF 511
>gi|356559933|ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Glycine max]
Length = 512
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 107/188 (56%), Gaps = 10/188 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V +W A+++ + G +D+A + F MP R+ V WT MI GY R ++ EAL LF
Sbjct: 144 MPVRGVPTWNAMMAGHARFGDMDVALELFRLMPSRNVVSWTTMISGYSRSKKYGEALGLF 203
Query: 61 QEM-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
M Q +M + T+ SI A ANL AL++G+ ++ Y KN +++ NA+++MY
Sbjct: 204 LRMEQEKGMMPNAVTLASIFPAFANLGALEIGQRVEAYARKNGFFKNLYVSNAVLEMYAK 263
Query: 120 CADVEKAQK---------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C ++ A K + SW +MI+GLA+ G K L ++ QML PD+V +VG
Sbjct: 264 CGKIDVAWKVFNEIGSLRNLCSWNSMIMGLAVHGECCKTLKLYDQMLGEGTSPDDVTFVG 323
Query: 171 VLSACTHN 178
+L ACTH
Sbjct: 324 LLLACTHG 331
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 74/154 (48%), Gaps = 9/154 (5%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFR-EALTLFQEMQTSNIMG 70
++ + + + A + P+ L+ +I Y + + + +L+ +M + +
Sbjct: 22 LIEKLLEIPNLHYAHKVLHHSPKPTLFLYNKLIQAYSSHPQHQHQCFSLYSQMLLHSFLP 81
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK-- 128
++ T + +A +L + LG+ + T+ K+ + D+FA AL+DMY +E A+K
Sbjct: 82 NQHTFNFLFSACTSLSSPSLGQMLHTHFIKSGFEPDLFAATALLDMYTKVGTLELARKLF 141
Query: 129 DKF------SWTTMIVGLAISGNGDKALDMFSQM 156
D+ +W M+ G A G+ D AL++F M
Sbjct: 142 DQMPVRGVPTWNAMMAGHARFGDMDVALELFRLM 175
>gi|147799976|emb|CAN68263.1| hypothetical protein VITISV_010806 [Vitis vinifera]
Length = 445
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 112/187 (59%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+ +SW A++S Y +++ AR+ FD+MP+RD W+AM+ GY ++ EAL LF
Sbjct: 204 MPLKNTVSWNAMISGYAGSSRINEARKLFDEMPDRDAASWSAMVSGYSQLGMCNEALDLF 263
Query: 61 QEMQTSNIM-GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
EM T + M +E +VS ++A A L AL+ G W+ +YI + K++ ++ G L+DMY
Sbjct: 264 MEMVTGDKMIPNEAALVSAVSACAQLXALEEGRWLHSYIKEKKLRINVTLGTVLLDMYGK 323
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C + A +++ SW +MI GLA++G G +AL +F +M P+ + ++ +
Sbjct: 324 CGSILDAAGVFNLMSERNVNSWNSMIAGLALNGCGKEALXLFWKMQFVGPSPNAITFIAL 383
Query: 172 LSACTHN 178
L+ C+H+
Sbjct: 384 LTGCSHS 390
Score = 43.1 bits (100), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 9/115 (7%)
Query: 51 NRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAG 110
+R +++T + M + D FT ++ + + LG + ++ K + D+F
Sbjct: 90 SRTLDSVTFYVCMLHAGHFPDNFTFPFLIKSSSASPTSLLGHQLHAHVVKFGLDRDVFVV 149
Query: 111 NALIDMYCICADVEKAQK---------DKFSWTTMIVGLAISGNGDKALDMFSQM 156
N +I +Y ++ A+K D SWTT+I G + SG D+A +F M
Sbjct: 150 NNMIALYSSFRELRSARKVFDESYSLVDVVSWTTLITGFSNSGQIDEARKIFDLM 204
Score = 38.9 bits (89), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T ++ Y G + A F+ M ER+ W +MI G +EAL LF +MQ
Sbjct: 315 TVLLDMYGKCGSILDAAGVFNLMSERNVNSWNSMIAGLALNGCGKEALXLFWKMQFVGPS 374
Query: 70 GDEFTIVSILTARANLRALDLGEWI 94
+ T +++LT ++ + G W+
Sbjct: 375 PNAITFIALLTGCSHSGLITEGRWL 399
>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 667
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 112/186 (60%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +KDV+SWT++V+ Y N+G V+ A Q F+ MP ++ V W ++I ++ ++ EA+ LF
Sbjct: 299 MLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELF 358
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M S +M D+ T+VSIL+ +N L LG+ YI N + + N+LIDMY C
Sbjct: 359 HRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICDNIITVSVTLCNSLIDMYAKC 418
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ A +K+ SW +I LA+ G G++A++MF M + + PDE+ + G+L
Sbjct: 419 GALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEMFKSMQASGLYPDEITFTGLL 478
Query: 173 SACTHN 178
SAC+H+
Sbjct: 479 SACSHS 484
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 96/205 (46%), Gaps = 39/205 (19%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
AI++ Y+ + ARQ FD + +R V W +MI GY ++ EA+ LFQEM +
Sbjct: 177 AILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEA 236
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--- 127
D FT+VS+L+A + LDLG ++ YI V+ D NALIDMY C ++ A+
Sbjct: 237 DVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVF 296
Query: 128 -----KDKFSWTTM-------------------------------IVGLAISGNGDKALD 151
KD SWT+M I L G +A++
Sbjct: 297 DQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVE 356
Query: 152 MFSQMLRASIKPDEVAYVGVLSACT 176
+F +M + + PD+ V +LS C+
Sbjct: 357 LFHRMCISGVMPDDATLVSILSCCS 381
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 16/181 (8%)
Query: 6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT 65
V++ ++S + G + A FDQ+P+ + ++ +I GY N ++L LF++M +
Sbjct: 71 VVTLGKLLSLCVQEGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVS 130
Query: 66 SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVK----NDIFAGNALIDMYCICA 121
+ M ++FT +L A A W + +K NA++ Y C
Sbjct: 131 AGPMPNQFTFPFVLKACAAKPFY----WEAVIVHAQAIKLGMGPHACVQNAILTAYVACR 186
Query: 122 DVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+ A+ + SW +MI G + G D+A+ +F +ML+ ++ D V +LS
Sbjct: 187 LILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLS 246
Query: 174 A 174
A
Sbjct: 247 A 247
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 27/166 (16%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRF-REALTLFQEMQTSNIM 69
+++ Y G + A F MPE++ V W +I G L ++ F EA+ +F+ MQ S +
Sbjct: 410 SLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVII-GALALHGFGEEAIEMFKSMQASGLY 468
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
DE T +L+A ++ +D+G + Y D +I + I VE
Sbjct: 469 PDEITFTGLLSACSHSGLVDMGRY---YFD------------IMISTFRISPGVEH---- 509
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ L G +A+ + +M +KPD V + +L AC
Sbjct: 510 ---YACMVDLLGRGGFLGEAMTLIQKM---PVKPDVVVWGALLGAC 549
>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 741
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 65/183 (35%), Positives = 113/183 (61%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++DV+S+TA++ Y +RG ++ A++ FD++P +D V W AMI GY ++EAL LF+E
Sbjct: 197 HRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKE 256
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M +NI DE T+V++++A A +++LG + ++ID + +++ N+L+D+Y C +
Sbjct: 257 MMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGE 316
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+E A KD SW T+I G +AL +F +MLR+ +P++V + +L A
Sbjct: 317 LETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPA 376
Query: 175 CTH 177
C H
Sbjct: 377 CAH 379
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 69/179 (38%), Positives = 107/179 (59%), Gaps = 12/179 (6%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y G+++ A F+ + +D + W +I GY +N ++EAL LFQEM S
Sbjct: 306 SLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERP 365
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGN---ALIDMYCICADVEKA- 126
++ T++SIL A A+L A+D+G WI YIDK ++K+ A + +LIDMY C D+E A
Sbjct: 366 NDVTMLSILPACAHLGAIDIGRWIHVYIDK-RLKSATNASSLRTSLIDMYAKCGDIEAAH 424
Query: 127 -------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
K SW MI G A+ G D A D+FS+M + I+PD++ +VG+LSAC+ +
Sbjct: 425 QVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRS 483
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 47/193 (24%), Positives = 82/193 (42%), Gaps = 39/193 (20%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A F+ + E + ++W M G+ + AL L+ M + ++ + +T +L + A
Sbjct: 87 AISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAK 146
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK---------------- 128
+A G+ I ++ K D+F +LI +Y +E A+K
Sbjct: 147 SKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTAL 206
Query: 129 -----------------------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165
D SW MI G A +GN +AL++F +M++ +I+PDE
Sbjct: 207 IKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDE 266
Query: 166 VAYVGVLSACTHN 178
V V+SAC +
Sbjct: 267 STMVTVVSACAQS 279
>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 113/187 (60%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++DV++WT ++ Y G +D A + F +P +D V WT+M+ GY + ++AL F
Sbjct: 170 MPHRDVVTWTELIVAYARSGDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFF 229
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV--KNDIFAGNALIDMYC 118
++M+ + ++ DE T+V ++A A L +WI+ + ++ +++F G+ALIDMY
Sbjct: 230 RKMREAGVVTDEITLVGAISACAQLGVSGYADWIREIAESSRFGSGSNVFVGSALIDMYS 289
Query: 119 ICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C +VE+A + + FS+++MIVG A+ G A+ +F +ML IKP+ V +VG
Sbjct: 290 KCGNVEEAYNVFKGMKEMNVFSYSSMIVGFAVHGRARSAIKLFYEMLENGIKPNHVTFVG 349
Query: 171 VLSACTH 177
+ +AC+H
Sbjct: 350 LFTACSH 356
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 42/186 (22%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88
F Q+ + L++A+I Y R F ++ L+ M +N+ FT ++ + L+
Sbjct: 69 FSQVHSPNPFLYSALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSL---LKNP 125
Query: 89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCI-----CADV---EKAQKDKFSWTTMIVGL 140
LG + + ND++ GN +I MY CA E +D +WT +IV
Sbjct: 126 SLGSQLHLHAFLFGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAY 185
Query: 141 AISGNGD-------------------------------KALDMFSQMLRASIKPDEVAYV 169
A SG+ D KAL F +M A + DE+ V
Sbjct: 186 ARSGDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLV 245
Query: 170 GVLSAC 175
G +SAC
Sbjct: 246 GAISAC 251
>gi|145335647|ref|NP_172798.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|110741720|dbj|BAE98806.1| hypothetical protein [Arabidopsis thaliana]
gi|332190892|gb|AEE29013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 474
Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 107/189 (56%), Gaps = 14/189 (7%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW ++ Y N G ++ + FD MPER+ W +I GY + R E L F
Sbjct: 116 MPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSF 175
Query: 61 QEM-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTY---IDKNKVKNDIFAGNALIDM 116
+ M +++ ++ T+ +L+A A L A D G+W+ Y + NKV D+ NALIDM
Sbjct: 176 KRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKV--DVNVKNALIDM 233
Query: 117 YCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
Y C +E A ++D SW TMI GLA G+G +AL++F +M + I PD+V +
Sbjct: 234 YGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTF 293
Query: 169 VGVLSACTH 177
VGVL AC H
Sbjct: 294 VGVLCACKH 302
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 85/177 (48%), Gaps = 32/177 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+ WT++++ Y+ + AR+ FD PERD VLW MI GY+ + EA +LF
Sbjct: 54 MVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIEMGNMLEARSLF 113
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M ++M + ++L AN+ ++ E +V +D+
Sbjct: 114 DQMPCRDVM----SWNTVLEGYANIGDMEACE---------RVFDDM------------- 147
Query: 121 ADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGVLSACT 176
+++ FSW +I G A +G + L F +M+ S+ P++ VLSAC
Sbjct: 148 -----PERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACA 199
>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
Length = 531
Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 109/185 (58%), Gaps = 10/185 (5%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD++SW +++ Y G + AR+ FD P+RD V W AMI GY+R ++A+ LF++M
Sbjct: 209 KDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSHKQAMELFEQM 268
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK--NKVKNDIFAGNALIDMYCICA 121
Q D T++S+L+A A+ +D G + ++ +++ GNALIDMY C
Sbjct: 269 QAMGEKPDTVTMLSLLSACADSGDMDAGRRLHRFLSGRFSRIGPSTVLGNALIDMYAKCG 328
Query: 122 DVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+ A K+ +W ++I GLA+ G+ +A+D+F +ML+ ++KPDE+ +V VL
Sbjct: 329 SMTSALEVFWLMQDKNVSTWNSIIGGLALHGHVTEAIDVFQKMLQGNVKPDEITFVAVLV 388
Query: 174 ACTHN 178
AC+H
Sbjct: 389 ACSHG 393
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 14/151 (9%)
Query: 19 RGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ------TSNIMGDE 72
RG AR FD++P D ++ +I G R+A++++ M + D+
Sbjct: 55 RGGTAHARLVFDRIPHPDRFMYNTLIRGAAHSYAPRDAVSIYARMARHSAGCGGGVRPDK 114
Query: 73 FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------E 124
T +L A A + A + G + ++ K ++D F NALI M+ C D+
Sbjct: 115 RTFPFVLRACAAMGASETGAQVHAHVVKAGCESDAFVRNALIGMHATCGDLGAAAALFDG 174
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQ 155
+A++D +W+ MI G A G+ A ++F +
Sbjct: 175 EAREDAVAWSAMISGFARRGDIGAARELFDE 205
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 66/182 (36%), Gaps = 47/182 (25%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
D A++ + G + A FD D V W+AMI G+ R A LF
Sbjct: 146 ESDAFVRNALIGMHATCGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAARELF-- 203
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
D++ VK D+ + N +I Y D
Sbjct: 204 ------------------------------------DESPVK-DLVSWNVMITAYAKLGD 226
Query: 123 VEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+ A+ +D SW MI G G+ +A+++F QM KPD V + +LSA
Sbjct: 227 MAPARELFDGAPDRDVVSWNAMISGYVRCGSHKQAMELFEQMQAMGEKPDTVTMLSLLSA 286
Query: 175 CT 176
C
Sbjct: 287 CA 288
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 71/159 (44%), Gaps = 10/159 (6%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G + A + F M +++ W ++I G EA+ +FQ+M N+
Sbjct: 319 ALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHVTEAIDVFQKMLQGNVKP 378
Query: 71 DEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
DE T V++L A ++ +D G E+ + ++ ++ ++DM +++A
Sbjct: 379 DEITFVAVLVACSHGGMVDKGHEYFNLMQQRYMIEPNVKHYGCMVDMLSRAGLLKEAFEF 438
Query: 127 ------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159
+ + W T++ I G + A ++L+A
Sbjct: 439 IGTMKIEPNPVIWRTLLGACRIHGELELAEHANQELLKA 477
>gi|9958072|gb|AAG09561.1|AC011810_20 Hypothetical protein [Arabidopsis thaliana]
Length = 421
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 107/189 (56%), Gaps = 14/189 (7%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW ++ Y N G ++ + FD MPER+ W +I GY + R E L F
Sbjct: 63 MPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSF 122
Query: 61 QEM-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTY---IDKNKVKNDIFAGNALIDM 116
+ M +++ ++ T+ +L+A A L A D G+W+ Y + NKV D+ NALIDM
Sbjct: 123 KRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKV--DVNVKNALIDM 180
Query: 117 YCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
Y C +E A ++D SW TMI GLA G+G +AL++F +M + I PD+V +
Sbjct: 181 YGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTF 240
Query: 169 VGVLSACTH 177
VGVL AC H
Sbjct: 241 VGVLCACKH 249
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 85/177 (48%), Gaps = 32/177 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+ WT++++ Y+ + AR+ FD PERD VLW MI GY+ + EA +LF
Sbjct: 1 MVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIEMGNMLEARSLF 60
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M ++M + ++L AN+ ++ E +V +D+
Sbjct: 61 DQMPCRDVM----SWNTVLEGYANIGDMEACE---------RVFDDM------------- 94
Query: 121 ADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGVLSACT 176
+++ FSW +I G A +G + L F +M+ S+ P++ VLSAC
Sbjct: 95 -----PERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACA 146
>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 613
Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats.
Identities = 70/174 (40%), Positives = 105/174 (60%), Gaps = 8/174 (4%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
+V Y G + A + F+ M ER+ V W ++I+GY R EALTLF+EM + D
Sbjct: 181 LVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPD 240
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA----- 126
FT+VS+L+A A L AL LG Y+ K + ++ AGNAL+D+Y C + +A
Sbjct: 241 GFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFD 300
Query: 127 ---QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+K SWT++IVGLA++G G +AL++F ++ R + P E+ +VGVL AC+H
Sbjct: 301 EMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSH 354
Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 8/159 (5%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A Q F Q+ + W MI GY AL L+++M S I D T +L A A
Sbjct: 93 AHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAK 152
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTM 136
L + GE + + +N ++ +F N L+ MY C E A K + +W ++
Sbjct: 153 LMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSV 212
Query: 137 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
I G A++G ++AL +F +M ++PD V +LSAC
Sbjct: 213 INGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSAC 251
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 12/146 (8%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRF-REALTLFQEMQTSNIM 69
A++ Y G + A + FD+M E+ V WT++I G L VN F +EAL LF+E++ +M
Sbjct: 281 ALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVG-LAVNGFGKEALELFKELERKGLM 339
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA-- 126
E T V +L A ++ +D G ++ K ++ + I ++D+ V++A
Sbjct: 340 PSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHE 399
Query: 127 -------QKDKFSWTTMIVGLAISGN 145
Q + W T++ I G+
Sbjct: 400 FIQNMPMQPNAVVWRTLLGACTIHGH 425
>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
Length = 1434
Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats.
Identities = 70/174 (40%), Positives = 105/174 (60%), Gaps = 8/174 (4%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
+V Y G + A + F+ M ER+ V W ++I+GY R EALTLF+EM + D
Sbjct: 36 LVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPD 95
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA----- 126
FT+VS+L+A A L AL LG Y+ K + ++ AGNAL+D+Y C + +A
Sbjct: 96 GFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFD 155
Query: 127 ---QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+K SWT++IVGLA++G G +AL++F ++ R + P E+ +VGVL AC+H
Sbjct: 156 EMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSH 209
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 12/146 (8%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRF-REALTLFQEMQTSNIM 69
A++ Y G + A + FD+M E+ V WT++I G L VN F +EAL LF+E++ +M
Sbjct: 136 ALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVG-LAVNGFGKEALELFKELERKGLM 194
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA-- 126
E T V +L A ++ +D G ++ K ++ + I ++D+ V++A
Sbjct: 195 PSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHE 254
Query: 127 -------QKDKFSWTTMIVGLAISGN 145
Q + W T++ I G+
Sbjct: 255 FIQNMPMQPNAVVWRTLLGACTIHGH 280
>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
Length = 705
Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 101/176 (57%), Gaps = 8/176 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G++ AR FD M +D + WTAMI Y + N A LF +M+ + +
Sbjct: 271 TALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVR 330
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-- 127
+E T+VS+L+ A ALD+G+W YIDK V+ D+ ALIDMY C D+ AQ
Sbjct: 331 PNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRL 390
Query: 128 ------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+D +W M+ G + G G+KAL +F++M +KP+++ ++G L AC+H
Sbjct: 391 FSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSH 446
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 91/186 (48%), Gaps = 17/186 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW+ ++ YI F +R V WTAMI GY+R N E LF
Sbjct: 170 MSERDVVSWSTMIRAYIT---------LFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLF 220
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M N+ ++ T++S++ + + A+ LG+ + YI +N + AL+DMY C
Sbjct: 221 VRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKC 280
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ A+ KD +WT MI A + D A +F QM ++P+E+ V +L
Sbjct: 281 GEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLL 340
Query: 173 SACTHN 178
S C N
Sbjct: 341 SLCAVN 346
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 30/152 (19%)
Query: 54 REALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNAL 113
R AL + M+ +I D F I S+L A + + +G+ I + KN + +D+F NAL
Sbjct: 91 RYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNAL 150
Query: 114 IDMYCICADVEKA------------------------------QKDKFSWTTMIVGLAIS 143
+ MY C + A Q+ SWT MI G
Sbjct: 151 MQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRC 210
Query: 144 GNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ ++ +F +M+ ++ P+++ + ++ +C
Sbjct: 211 NDLEEGERLFVRMIEENVFPNDITMLSLIISC 242
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DVI TA++ Y G + A++ F + +RD W M+ GY +AL LF EM+
Sbjct: 367 DVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEME 426
Query: 65 TSNIMGDEFTIVSILTA 81
T + ++ T + L A
Sbjct: 427 TLGVKPNDITFIGALHA 443
>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 542
Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 114/186 (61%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD++SW +++ Y G+++ AR+ FD++P++D V W AMI GY+ +EAL +F
Sbjct: 205 MPMKDLVSWNVMITAYAKHGEMEKARKLFDEVPKKDVVTWNAMIAGYVLSRLNKEALEMF 264
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWI-KTYIDKNKVKNDIFAGNALIDMYCI 119
M+ D+ T++SIL+A A+L L++G+ I ++ D + NALIDMY
Sbjct: 265 DAMRDLGQRPDDVTMLSILSASADLGDLEIGKKIHRSIFDMCCGDLSVLLSNALIDMYAK 324
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C + A +KD SW ++I GLA+ G+ ++++++F +MLR +KP+E+ +V V
Sbjct: 325 CGSIGNALEVFQGMRKKDTSSWNSIIGGLALHGHAEESINLFQEMLRLKMKPNEITFVAV 384
Query: 172 LSACTH 177
L AC+H
Sbjct: 385 LVACSH 390
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 8/153 (5%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
VS + G +D A Q F Q+ + D +W MI G + + A++L+ +M+ + D
Sbjct: 53 FVSAIVVSGTMDYAHQLFAQISQPDIFMWNTMIRGSAQTLKPATAVSLYTQMENRGVRPD 112
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV-------- 123
+FT +L A L + LG I + K+ +++ F N LI + C D+
Sbjct: 113 KFTFSFVLKACTKLSWVKLGFGIHGKVLKSGFQSNTFVRNTLIYFHANCGDLATARALFD 172
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
A+++ W+ + G A G D A +F +M
Sbjct: 173 ASAKREVVPWSALTAGYARRGKLDVARQLFDEM 205
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 64/167 (38%), Gaps = 47/167 (28%)
Query: 16 YINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTI 75
+ N G + AR FD +R+ V W+A+ GY R + A LF EM
Sbjct: 158 HANCGDLATARALFDASAKREVVPWSALTAGYARRGKLDVARQLFDEMPMK--------- 208
Query: 76 VSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------Q 127
DL W N +I Y ++EKA +
Sbjct: 209 -------------DLVSW-----------------NVMITAYAKHGEMEKARKLFDEVPK 238
Query: 128 KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
KD +W MI G +S +AL+MF M +PD+V + +LSA
Sbjct: 239 KDVVTWNAMIAGYVLSRLNKEALEMFDAMRDLGQRPDDVTMLSILSA 285
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 126 AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+Q D F W TMI G A + A+ +++QM ++PD+ + VL ACT
Sbjct: 74 SQPDIFMWNTMIRGSAQTLKPATAVSLYTQMENRGVRPDKFTFSFVLKACT 124
>gi|356527575|ref|XP_003532384.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61800-like [Glycine max]
Length = 577
Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats.
Identities = 66/181 (36%), Positives = 100/181 (55%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+S+ A++ + Q+ AR+ FD+MP RD + W MI GY + +A+ LF EM
Sbjct: 174 DVVSYNALIHGLVKTRQISRARELFDEMPVRDEISWGTMIAGYSHLKLCNQAIELFNEMM 233
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ D +VS+L+A A L L+ G + YI +N+++ D + L+D+Y C VE
Sbjct: 234 RLEVKPDNIALVSVLSACAQLGELEQGSIVHDYIKRNRIRVDSYLATGLVDLYAKCGCVE 293
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A +K F+W M+VG AI G G L+ FS+M+ +KPD V +GVL C+
Sbjct: 294 TARDVFESCMEKYVFTWNAMLVGFAIHGEGSMVLEYFSRMVSEGVKPDGVTLLGVLVGCS 353
Query: 177 H 177
H
Sbjct: 354 H 354
Score = 40.4 bits (93), Expect = 0.27, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 71/176 (40%), Gaps = 16/176 (9%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T +V Y G V+ AR F+ E+ W AM+ G+ L F M + +
Sbjct: 280 TGLVDLYAKCGCVETARDVFESCMEKYVFTWNAMLVGFAIHGEGSMVLEYFSRMVSEGVK 339
Query: 70 GDEFTIVSILT--ARANL-----RALDLGEWIKTYIDKNKVKN-----DIFAGNALIDMY 117
D T++ +L + A L R D E Y K + K+ D+ A LI+
Sbjct: 340 PDGVTLLGVLVGCSHAGLVLEARRIFD--EMENVYGVKREGKHYGCMADMLARAGLIEEG 397
Query: 118 CICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+ D F+W ++ G I GN + A Q++ IKP++ V++
Sbjct: 398 VEMVKAMPSGGDVFAWGGLLGGCRIHGNVEVAKKAAQQVME--IKPEDGGVYSVMA 451
>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
Length = 706
Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats.
Identities = 70/180 (38%), Positives = 103/180 (57%), Gaps = 8/180 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+ TA+V G+ D AR+ FD MP+RD+V W AMI GY+ R REAL LF EM+
Sbjct: 267 DVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMR 326
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ E T+VS LTA A L AL+ G+W+ + ++ + G ALIDMY C V
Sbjct: 327 HAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVA 386
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A +++ ++WT+ + GLA++G G L +F +M ++P+ V +V VL C+
Sbjct: 387 AAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCS 446
>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
Length = 706
Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats.
Identities = 70/180 (38%), Positives = 103/180 (57%), Gaps = 8/180 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+ TA+V G+ D AR+ FD MP+RD+V W AMI GY+ R REAL LF EM+
Sbjct: 267 DVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMR 326
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ E T+VS LTA A L AL+ G+W+ + ++ + G ALIDMY C V
Sbjct: 327 HAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVA 386
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A +++ ++WT+ + GLA++G G L +F +M ++P+ V +V VL C+
Sbjct: 387 AAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCS 446
>gi|226531396|ref|NP_001147435.1| methyltransferase small domain [Zea mays]
gi|195611352|gb|ACG27506.1| methyltransferase small domain [Zea mays]
Length = 601
Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats.
Identities = 69/183 (37%), Positives = 107/183 (58%), Gaps = 8/183 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD ISW +VS ++N G +D+A + F + P RD + W A++ GY R F E + LF +M
Sbjct: 288 KDAISWNTMVSGFVNAGMLDLASRFFSEAPSRDLISWNALLAGYARYKGFNEVMKLFHDM 347
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
S + D+ T V++++A A +L+ + + ++ K D F +AL+DMYC C +V
Sbjct: 348 LASCVNLDKVTAVTLISAAAGKGSLNHAKSVHGWVVKEFGHQDAFLASALVDMYCKCGNV 407
Query: 124 -------EKA-QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
EKA KD WT MI GLA +G+G +AL++F +M + P+ V + VLSAC
Sbjct: 408 KIAYYVFEKALDKDVTLWTAMISGLAFNGHGTEALELFWKMQTEVVAPNGVTLLAVLSAC 467
Query: 176 THN 178
+H+
Sbjct: 468 SHS 470
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 10/155 (6%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ YI+ G V+ A F D V M+ GY+ +AL F++M + I+
Sbjct: 161 SLIKMYIDAGDVETAELMFRSALVLDTVSCNIMLSGYVNEGCTLKALWFFRDMASRGIVV 220
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKND--IFAGNALIDMYCICADV----- 123
D++T V++LT L+ +G + I + D + NAL+DMY C +
Sbjct: 221 DQYTAVALLTCCGRLKNELIGRSVHGVIVRRMDAGDHGLILVNALLDMYAKCGRMNAAKT 280
Query: 124 ---EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQ 155
E +KD SW TM+ G +G D A FS+
Sbjct: 281 IFGEAGEKDAISWNTMVSGFVNAGMLDLASRFFSE 315
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 49/89 (55%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++D +A+V Y G V IA F++ ++D LWTAMI G EAL LF +
Sbjct: 388 HQDAFLASALVDMYCKCGNVKIAYYVFEKALDKDVTLWTAMISGLAFNGHGTEALELFWK 447
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLG 91
MQT + + T++++L+A ++ LD G
Sbjct: 448 MQTEVVAPNGVTLLAVLSACSHSGLLDEG 476
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 11/129 (8%)
Query: 55 EALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALI 114
+A L++ M S+++ D+ T +++L + +L A G + ++ + + + ++ N+LI
Sbjct: 107 QAAALYRSMLASSVLPDQQTFLALLRSVEHLSA---GRQVHAHVVVSGLHSRVYLRNSLI 163
Query: 115 DMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 166
MY DVE A+ D S M+ G G KAL F M I D+
Sbjct: 164 KMYIDAGDVETAELMFRSALVLDTVSCNIMLSGYVNEGCTLKALWFFRDMASRGIVVDQY 223
Query: 167 AYVGVLSAC 175
V +L+ C
Sbjct: 224 TAVALLTCC 232
>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
Length = 699
Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats.
Identities = 70/180 (38%), Positives = 103/180 (57%), Gaps = 8/180 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+ TA+V G+ D AR+ FD MP+RD+V W AMI GY+ R REAL LF EM+
Sbjct: 260 DVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMR 319
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ E T+VS LTA A L AL+ G+W+ + ++ + G ALIDMY C V
Sbjct: 320 HAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVA 379
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A +++ ++WT+ + GLA++G G L +F +M ++P+ V +V VL C+
Sbjct: 380 AAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCS 439
>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 107/182 (58%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
++V T+++ Y+ G ++ A F MPE+D V W+ MI GY ++AL LF +M
Sbjct: 248 RNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQM 307
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
Q+ N+ D +T+V +L+A A L ALDLG W + +D+N+ ++ G ALIDMY C V
Sbjct: 308 QSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSV 367
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+A +KD+ W M+VGL+++G+ +FS + + I+PDE ++G+L C
Sbjct: 368 TQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGC 427
Query: 176 TH 177
TH
Sbjct: 428 TH 429
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 105/181 (58%), Gaps = 8/181 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ DV T+++S Y+ D A + FD +P+++ V WTA+I GY+ FREA+ F++
Sbjct: 146 DHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKK 205
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ + D F++V +L A A L GEWI YI + + ++F +L+DMY C +
Sbjct: 206 LLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGN 265
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+E+A +KD SW+TMI G A +G +ALD+F QM ++KPD VGVLSA
Sbjct: 266 LERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSA 325
Query: 175 C 175
C
Sbjct: 326 C 326
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 8/164 (4%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G + ++ F Q+ E + LW MI G + + F +A+ L+ M+ + + FTI +L
Sbjct: 62 GSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVL 121
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKF 131
A A + LG I + + K +D+F +L+ +Y C + + A K+
Sbjct: 122 KACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVV 181
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
SWT +I G SG+ +A+ F ++L +KPD + V VL+AC
Sbjct: 182 SWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAAC 225
>gi|414866864|tpg|DAA45421.1| TPA: diphthine synthase [Zea mays]
Length = 897
Score = 135 bits (341), Expect = 6e-30, Method: Composition-based stats.
Identities = 63/186 (33%), Positives = 110/186 (59%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+SW +++ + +V+ AR FDQMP R+ V WT +IDGY + EALTL
Sbjct: 260 MPVKNVVSWNVMITGFAGWDEVEYARLLFDQMPCRNVVSWTGLIDGYTHACLYAEALTLL 319
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M I E +++++ A +NL + +GE + Y +K + +D+ GN+LID+Y
Sbjct: 320 RHMMAGGISPSEIIVLAVIPAISNLGGIVMGEMLNGYCEKKGIMSDVRVGNSLIDLYAKI 379
Query: 121 ADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
V+ + +++ SWT++I G A+ G +AL++F++M RA IKP+ + ++ V
Sbjct: 380 GSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSV 439
Query: 172 LSACTH 177
++ C+H
Sbjct: 440 INVCSH 445
>gi|414866863|tpg|DAA45420.1| TPA: hypothetical protein ZEAMMB73_079127 [Zea mays]
Length = 716
Score = 135 bits (341), Expect = 6e-30, Method: Composition-based stats.
Identities = 63/186 (33%), Positives = 110/186 (59%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+SW +++ + +V+ AR FDQMP R+ V WT +IDGY + EALTL
Sbjct: 260 MPVKNVVSWNVMITGFAGWDEVEYARLLFDQMPCRNVVSWTGLIDGYTHACLYAEALTLL 319
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M I E +++++ A +NL + +GE + Y +K + +D+ GN+LID+Y
Sbjct: 320 RHMMAGGISPSEIIVLAVIPAISNLGGIVMGEMLNGYCEKKGIMSDVRVGNSLIDLYAKI 379
Query: 121 ADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
V+ + +++ SWT++I G A+ G +AL++F++M RA IKP+ + ++ V
Sbjct: 380 GSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSV 439
Query: 172 LSACTH 177
++ C+H
Sbjct: 440 INVCSH 445
>gi|357131180|ref|XP_003567218.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Brachypodium distachyon]
Length = 474
Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 113/187 (60%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+SW +++ + RG+++ AR F++MP R+ V WT +IDGY R EA+ L
Sbjct: 155 MPVKNVVSWNVMITGFAGRGEIEYARLLFERMPSRNVVSWTGLIDGYTRSCHSVEAVALL 214
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M I E T+++++ A +++ + +GE + Y +KN + DI GN+LID+Y
Sbjct: 215 RRMMAEGISPTEITVLAVVPAISDIGRILMGETLHGYCEKNGLVLDIRVGNSLIDLYAKI 274
Query: 121 ADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
++ + +++ SWT++I G A+ G +A+++F++M R+ I+P+ V ++ V
Sbjct: 275 GSIQSSLKVFHGMLNRRNLVSWTSIISGFAMHGLSTEAVELFAEMRRSGIRPNRVTFLSV 334
Query: 172 LSACTHN 178
L+AC+H
Sbjct: 335 LNACSHG 341
>gi|225433758|ref|XP_002267783.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 636
Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 110/187 (58%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+SW +++RYI G+++ A+ F +MPERD V W +MI GY+++ + AL LF
Sbjct: 317 MPGKNVVSWNMLIARYIRLGKIEDAKVVFQEMPERDAVSWNSMIAGYVQIKDYARALALF 376
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EM+ +N+ + T++S+L A A AL++G I + + + K + + NAL+DMY C
Sbjct: 377 REMEIANVEATDITLISVLGACAETGALEIGRKIHLSLKQREYKIEGYLSNALVDMYAKC 436
Query: 121 ADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA--SIKPDEVAYVG 170
+ E K W MIV LA+ G ++AL +FS M + +P+ V ++G
Sbjct: 437 GHLNLAWEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTMEMSVDGARPNRVTFIG 496
Query: 171 VLSACTH 177
VL AC+H
Sbjct: 497 VLIACSH 503
>gi|125554650|gb|EAZ00256.1| hypothetical protein OsI_22267 [Oryza sativa Indica Group]
Length = 602
Score = 135 bits (341), Expect = 6e-30, Method: Composition-based stats.
Identities = 69/181 (38%), Positives = 102/181 (56%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+SWT +V G VD AR+ FD MP R+ V W +MI GY++ +RF +AL +F EM+
Sbjct: 163 DVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMR 222
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ G+ F S L A AL G I +++++ ++ D A++DMYC C V+
Sbjct: 223 ALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVD 282
Query: 125 KAQK--DKF------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+A + D +W MI G A+ G D AL++F QM A + PD+V + VL+AC
Sbjct: 283 EAWRVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACA 342
Query: 177 H 177
H
Sbjct: 343 H 343
>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
[Vitis vinifera]
gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
Length = 618
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 108/178 (60%), Gaps = 10/178 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+A++ Y G + AR+ FD+M ++D V W AMI GY + EA+ LF M+ S +
Sbjct: 266 SALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVN 325
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
D+ T+V +L+A A++ ALD G+W+ TY + ++NDI+ ALIDMY C ++ A
Sbjct: 326 PDKITLVGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRV 385
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLR--ASIKPDEVAYVGVLSACTH 177
QK++ SW MI LA G ++L +F +M + +++P++++++GVLSAC H
Sbjct: 386 FEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVH 443
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 104/174 (59%), Gaps = 8/174 (4%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
++++ Y G++ AR+ FD++ E+D V W +MI GY R+ +A+ LF EM+ +
Sbjct: 166 SLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEP 225
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA---- 126
DE T+VSIL A +L L LG WI+ ++ +N++ + F G+ALI MY C D+ A
Sbjct: 226 DEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVF 285
Query: 127 ----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+KD +W MI G A +G D+A+ +FS M + + PD++ VGVLSAC
Sbjct: 286 DRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSACA 339
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 82/173 (47%), Gaps = 9/173 (5%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRV-NRFREALTLFQEMQTSNIMG 70
++ R+I+ + A F Q+P + + MI G +F + + +M+ I
Sbjct: 65 LLHRFIDLKDFNNASLLFSQIPYPNEYAFNIMIRGLTTTWQKFNLTIEFYYQMKDFGIRP 124
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV------- 123
+ FT + A ANL L+ G+ + + K+ + D ++LI MY C ++
Sbjct: 125 NNFTYPFVFIACANLLVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGCARRVF 184
Query: 124 -EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E ++KD SW +MI G + G A+ +F +M A +PDE+ V +L AC
Sbjct: 185 DEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGAC 237
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 27/173 (15%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM- 63
D+ TA++ Y G +D A + F+ MP+++ V W AMI R +E+L+LF+ M
Sbjct: 362 DIYVSTALIDMYAKCGSLDDALRVFEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMS 421
Query: 64 -QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ + ++ + + +L+A + +D G + + + + +
Sbjct: 422 KEGGAVRPNDISFIGVLSACVHAGLVDEGRQLFDLMSSS---------------FGLVPK 466
Query: 123 VEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+E + M+ LA +G+ +A D +M KPDEV +L AC
Sbjct: 467 IEHH-------SCMVDLLARAGHVHEAWDFIEKMPE---KPDEVVLGALLGAC 509
>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 107/182 (58%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
++V T+++ Y+ G ++ A F MPE+D V W+ MI GY ++AL LF +M
Sbjct: 248 RNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQM 307
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
Q+ N+ D +T+V +L+A A L ALDLG W + +D+N+ ++ G ALIDMY C V
Sbjct: 308 QSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSV 367
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+A +KD+ W M+VGL+++G+ +FS + + I+PDE ++G+L C
Sbjct: 368 TQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGC 427
Query: 176 TH 177
TH
Sbjct: 428 TH 429
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 105/181 (58%), Gaps = 8/181 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ DV T+++S Y+ D A + FD +P+++ V WTA+I GY+ FREA+ F++
Sbjct: 146 DHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKK 205
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ + D F++V +L A A L GEWI YI + + ++F +L+DMY C +
Sbjct: 206 LLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGN 265
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+E+A +KD SW+TMI G A +G +ALD+F QM ++KPD VGVLSA
Sbjct: 266 LERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSA 325
Query: 175 C 175
C
Sbjct: 326 C 326
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 84/167 (50%), Gaps = 8/167 (4%)
Query: 17 INRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIV 76
++ G + ++ F Q+ E + LW MI G + + F +A+ L+ M+ + + FTI
Sbjct: 59 LDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIP 118
Query: 77 SILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QK 128
+L A A + LG I + + K +D+F +L+ +Y C + + A K
Sbjct: 119 FVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDK 178
Query: 129 DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ SWT +I G SG+ +A+ F ++L +KPD + V VL+AC
Sbjct: 179 NVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAAC 225
>gi|27545050|gb|AAO18456.1| hypothetical protein, 3'-partial [Oryza sativa Japonica Group]
Length = 382
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 99/161 (61%), Gaps = 8/161 (4%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
AR FD+MP+ V W+AMI GY+R +A+ LF+EMQ + + DE T++ +L A +
Sbjct: 183 ARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVDLFREMQANGVQADEVTVIGVLAAATD 242
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTM 136
L AL+L W++ ++++ + + NALID C DV+ A Q+ SWT++
Sbjct: 243 LGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSV 302
Query: 137 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
I LA+ G G +A+ +F +M A + PD+VA++GVL+AC+H
Sbjct: 303 IDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSH 343
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
K V A++ G VD A F+ M +R V WT++ID R +EA+ +F+E
Sbjct: 262 GKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEE 321
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDI 107
M+ + + D+ + +LTA ++ +D G Y D KV+ I
Sbjct: 322 MKVAGVPPDDVAFIGVLTACSHAGMVDEG---CGYFDAMKVEYGI 363
>gi|356545987|ref|XP_003541414.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 613
Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats.
Identities = 75/186 (40%), Positives = 108/186 (58%), Gaps = 14/186 (7%)
Query: 6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT 65
V +WT++VS Y RG+V++AR+ FDQM ERD V WTAMI GY F+EAL LF E++
Sbjct: 250 VAAWTSLVSAYALRGEVEVARRLFDQMGERDVVSWTAMISGYCHAGCFQEALELFVELED 309
Query: 66 SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVK---NDIFAGNALIDMYCICAD 122
+ DE +V+ L+A A L AL+LG I D++ + N F A++DMY C
Sbjct: 310 LGMEPDEVVVVAALSACARLGALELGRRIHHKYDRDSWQCGHNRGFTC-AVVDMYAKCGS 368
Query: 123 VEKA----------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E A K F + +++ GLA G G+ A+ +F +M ++PDEV YV +L
Sbjct: 369 IEAALDVFLKTSDDMKTTFLYNSIMSGLAHHGRGEHAMALFEEMRLVGLEPDEVTYVALL 428
Query: 173 SACTHN 178
AC H+
Sbjct: 429 CACGHS 434
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 56/214 (26%), Positives = 94/214 (43%), Gaps = 44/214 (20%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+V A++ Y G A + FD+ P RD V + +I+G +R R ++ +F EM+
Sbjct: 114 NVFVVNALLQVYFVFGDARNACRVFDESPVRDSVSYNTVINGLVRAGRAGCSMRIFAEMR 173
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK---VKNDIFAGNALIDMYCICA 121
+ DE+T V++L+A + L +G + + + +N++ NAL+DMY C
Sbjct: 174 GGFVEPDEYTFVALLSACSLLEDRGIGRVVHGLVYRKLGCFGENELLV-NALVDMYAKCG 232
Query: 122 DVEKA----------------------------------------QKDKFSWTTMIVGLA 141
+E A ++D SWT MI G
Sbjct: 233 CLEVAERVVRNGNGKSGVAAWTSLVSAYALRGEVEVARRLFDQMGERDVVSWTAMISGYC 292
Query: 142 ISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+G +AL++F ++ ++PDEV V LSAC
Sbjct: 293 HAGCFQEALELFVELEDLGMEPDEVVVVAALSAC 326
>gi|414872719|tpg|DAA51276.1| TPA: methyltransferase small domain protein [Zea mays]
Length = 601
Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats.
Identities = 66/183 (36%), Positives = 105/183 (57%), Gaps = 8/183 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD ISW +VS ++N G +D+A + F + P RD + W A++ GY R F E + LF +M
Sbjct: 288 KDAISWNTMVSGFVNAGMLDLASRFFSEAPSRDLISWNALLAGYARYKSFNEVMKLFHDM 347
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
S + D+ T V++++A +L+ + + ++ K D F +AL+DMYC C +V
Sbjct: 348 VASCVNLDKVTAVTLISAATGKGSLNHAKSVHGWVVKEFDHQDAFLASALVDMYCKCGNV 407
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ A KD WT MI GLA +G+G +AL++F +M + P+ V + VLSAC
Sbjct: 408 KTAYYVFEKALDKDVTLWTAMISGLAFNGHGTEALELFCKMQTEVVAPNGVTLLAVLSAC 467
Query: 176 THN 178
+H+
Sbjct: 468 SHS 470
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 10/155 (6%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ YI+ G V+ A F D V M+ GY+ +AL F++M + I+
Sbjct: 161 SLIKMYIDAGDVETAELMFRSALVLDTVSCNIMLSGYVNEGCTLKALWFFRDMASRGIVV 220
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKND--IFAGNALIDMYCICADV----- 123
D++T V++LT L+ +G + I + D + NAL+DMY C +
Sbjct: 221 DQYTAVALLTCCGRLKNELIGRSVHGVIVRRMDAGDHGLILVNALLDMYAKCGRMNAAKT 280
Query: 124 ---EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQ 155
E +KD SW TM+ G +G D A FS+
Sbjct: 281 IFGETGEKDAISWNTMVSGFVNAGMLDLASRFFSE 315
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 48/89 (53%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++D +A+V Y G V A F++ ++D LWTAMI G EAL LF +
Sbjct: 388 HQDAFLASALVDMYCKCGNVKTAYYVFEKALDKDVTLWTAMISGLAFNGHGTEALELFCK 447
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLG 91
MQT + + T++++L+A ++ LD G
Sbjct: 448 MQTEVVAPNGVTLLAVLSACSHSGLLDEG 476
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 11/129 (8%)
Query: 55 EALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALI 114
+A L++ M S+++ D+ T +++L + L A G + ++ + + + ++ N+LI
Sbjct: 107 QAAALYRSMLASSVLPDQQTFLALLRSVERLSA---GRQVHAHVVVSGLHSRVYLRNSLI 163
Query: 115 DMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 166
MY DVE A+ D S M+ G G KAL F M I D+
Sbjct: 164 KMYIDAGDVETAELMFRSALVLDTVSCNIMLSGYVNEGCTLKALWFFRDMASRGIVVDQY 223
Query: 167 AYVGVLSAC 175
V +L+ C
Sbjct: 224 TAVALLTCC 232
>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
pumila]
Length = 710
Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 105/178 (58%), Gaps = 10/178 (5%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G+++ A F + +D + W +I GY +N ++EAL LFQ+M S
Sbjct: 275 ALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKP 334
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDK--NKVKNDIFAGNALIDMYCICADVEKAQ- 127
++ T++SIL+A A+L A+D+G WI YIDK V N +LIDMY C D+E AQ
Sbjct: 335 NDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQ 394
Query: 128 -------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+ SW MI G A+ G + A D+FS+M + I+PD++ +VG+LSAC+H+
Sbjct: 395 VFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHS 452
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 111/183 (60%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++DV+S+TA+++ Y +RG ++ A + FD++P +D V W A I GY ++EAL LF++
Sbjct: 166 HRDVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKK 225
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M +N+ DE T+V++L+A A +++LG + ++I+ + ++ NALID+Y C +
Sbjct: 226 MMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGE 285
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+E A KD SW T+I G +AL +F MLR+ KP++V + +LSA
Sbjct: 286 LETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSA 345
Query: 175 CTH 177
C H
Sbjct: 346 CAH 348
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 76/186 (40%), Gaps = 39/186 (20%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88
FD + E ++W M G+ + AL L+ M + ++ + +T +L + A A
Sbjct: 60 FDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAF 119
Query: 89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK-------------------- 128
G+ + + K D++ +LI MY +E AQK
Sbjct: 120 KEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGY 179
Query: 129 -------------------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
D SW I G A +GN +AL++F +M++ +++PDE V
Sbjct: 180 ASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMV 239
Query: 170 GVLSAC 175
VLSAC
Sbjct: 240 TVLSAC 245
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 10/146 (6%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T+++ Y G ++ A+Q FD M R W AMI G+ R A +F M+ + I
Sbjct: 377 TSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIE 436
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKN-KVKNDIFAGNALIDMYCICADVEKAQK 128
D+ T V +L+A ++ LDLG I + ++ K+ + +ID+ ++A+K
Sbjct: 437 PDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEK 496
Query: 129 ---------DKFSWTTMIVGLAISGN 145
D W +++ + GN
Sbjct: 497 MINTMEMEPDGVIWCSLLKACKMHGN 522
>gi|115467246|ref|NP_001057222.1| Os06g0231400 [Oryza sativa Japonica Group]
gi|51535413|dbj|BAD37283.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113595262|dbj|BAF19136.1| Os06g0231400 [Oryza sativa Japonica Group]
gi|125596589|gb|EAZ36369.1| hypothetical protein OsJ_20697 [Oryza sativa Japonica Group]
Length = 602
Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats.
Identities = 68/181 (37%), Positives = 101/181 (55%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+SWT +V G VD AR+ FD MP R+ V W +MI GY++ +RF +AL +F EM+
Sbjct: 163 DVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMR 222
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ G+ F S L A AL G I +++++ ++ D A++DMYC C V+
Sbjct: 223 ALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVD 282
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+A + +W MI G A+ G D AL++F QM A + PD+V + VL+AC
Sbjct: 283 EAWGVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACA 342
Query: 177 H 177
H
Sbjct: 343 H 343
>gi|326496937|dbj|BAJ98495.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 491
Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 109/186 (58%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW A++ Y + G + AR+ FD MP R+ W++M+ G +R NR EAL +F
Sbjct: 165 MPERNVVSWNAMLGAYASAGMLSKARKLFDIMPSRNAASWSSMVTGLVRSNRCEEALRVF 224
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM ++ +E +VS ++A + LR+L+ G W+ Y + + A++DMY C
Sbjct: 225 SEMIGMGVVPNESALVSAVSACSLLRSLEHGVWVHAYAKRELQGMSLVLATAIVDMYGKC 284
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ A K+ +SW +MI GLA++G +AL +F +M A ++P+++ ++G+L
Sbjct: 285 GGIHNAVRVFAAMPVKNIYSWNSMITGLAMNGREMQALSLFWKMQMAGVRPNDITFIGLL 344
Query: 173 SACTHN 178
AC+H+
Sbjct: 345 GACSHS 350
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TAIV Y G + A + F MP ++ W +MI G R +AL+LF +MQ + +
Sbjct: 275 TAIVDMYGKCGGIHNAVRVFAAMPVKNIYSWNSMITGLAMNGREMQALSLFWKMQMAGVR 334
Query: 70 GDEFTIVSILTARANLRALDLGEWI 94
++ T + +L A ++ +D G W+
Sbjct: 335 PNDITFIGLLGACSHSGLVDEGRWL 359
>gi|356518836|ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 568
Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats.
Identities = 64/177 (36%), Positives = 111/177 (62%), Gaps = 10/177 (5%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ--TSNI 68
A+++ Y G + + + FD+MP RD + W+++I + + EALTLFQ+MQ S+I
Sbjct: 133 ALINSYGTSGSLHASLKLFDEMPRRDLISWSSLISCFAKRGLPDEALTLFQQMQLKESDI 192
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA-- 126
+ D ++S+++A ++L AL+LG W+ +I + V + G+ALIDMY C D++++
Sbjct: 193 LPDGVVMLSVISAVSSLGALELGIWVHAFISRIGVNLTVSLGSALIDMYSRCGDIDRSVK 252
Query: 127 ------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
++ +WT +I GLA+ G G +AL+ F M+ + +KPD +A++GVL AC+H
Sbjct: 253 VFDEMPHRNVVTWTALINGLAVHGRGREALEAFYDMVESGLKPDRIAFMGVLVACSH 309
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+A++ Y G +D + + FD+MP R+ V WTA+I+G R REAL F +M S +
Sbjct: 235 SALIDMYSRCGDIDRSVKVFDEMPHRNVVTWTALINGLAVHGRGREALEAFYDMVESGLK 294
Query: 70 GDEFTIVSILTA 81
D + +L A
Sbjct: 295 PDRIAFMGVLVA 306
>gi|356557876|ref|XP_003547236.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like [Glycine max]
Length = 912
Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 100/180 (55%), Gaps = 10/180 (5%)
Query: 8 SWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN 67
SW A+VS +I VD AR+ FD MPERD W+ MI GY + ++ R AL LF +M S
Sbjct: 601 SWNALVSGFIKNRMVDQARKIFDDMPERDVFSWSTMISGYAQTDQSRIALELFHKMVASG 660
Query: 68 IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127
I +E T+VS+ +A A L L G W YI + + ALIDMY C + A
Sbjct: 661 IKPNEVTMVSVFSAIATLGTLKEGRWAHEYICNESIPLNDNLRAALIDMYAKCGSINSAL 720
Query: 128 ------KDK-FS---WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+DK FS W +I GLA G+ LD+FS M R +IKP+ + ++GVLSAC H
Sbjct: 721 QFFNQIRDKTFSVSPWNAIICGLASHGHASMCLDVFSDMQRYNIKPNPITFIGVLSACCH 780
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 108/213 (50%), Gaps = 39/213 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++SW +++ Y G VD+AR+ F+++P++D + W MIDGY+ +NR EAL ++
Sbjct: 462 MPEVNLVSWNVMLNGYAKAGLVDMARELFERVPDKDVISWGTMIDGYILMNRLHEALVMY 521
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK------NKVKNDI---FAGN 111
+ M S + +E +V++++A L A+ G + + K N ++ I +A
Sbjct: 522 RAMLRSGLALNEILVVNLVSACGRLNAIGDGWQLHGMVVKKGFDCYNFIQTTIIHFYAAC 581
Query: 112 ALIDMYCICADV------------------------------EKAQKDKFSWTTMIVGLA 141
++D+ C+ +V + ++D FSW+TMI G A
Sbjct: 582 GMMDLACLQFEVGAKDHLESWNALVSGFIKNRMVDQARKIFDDMPERDVFSWSTMISGYA 641
Query: 142 ISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+ AL++F +M+ + IKP+EV V V SA
Sbjct: 642 QTDQSRIALELFHKMVASGIKPNEVTMVSVFSA 674
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 97/210 (46%), Gaps = 39/210 (18%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+ IS +V Y GQ+D AR+ FD MP++ V +T MI G ++ FREAL +F++M+
Sbjct: 334 NPISCNIMVCGYAKAGQLDNARKLFDIMPDKGCVSYTTMIMGLVQNECFREALEVFKDMR 393
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ ++ ++ T+V+++ A ++ + I K V+ + L+ YC+C+ V
Sbjct: 394 SDGVVPNDLTLVNVIYACSHFGEILNCRMIHAIAIKLFVEGLVLVSTNLMRAYCLCSGVG 453
Query: 125 KAQ---------------------------------------KDKFSWTTMIVGLAISGN 145
+A+ KD SW TMI G +
Sbjct: 454 EARRLFDRMPEVNLVSWNVMLNGYAKAGLVDMARELFERVPDKDVISWGTMIDGYILMNR 513
Query: 146 GDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+AL M+ MLR+ + +E+ V ++SAC
Sbjct: 514 LHEALVMYRAMLRSGLALNEILVVNLVSAC 543
Score = 40.0 bits (92), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 71/162 (43%), Gaps = 15/162 (9%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVL--WTAMIDGYLRVNRFREALTLFQEMQTSN 67
A++ Y G ++ A Q F+Q+ ++ + + W A+I G L +F +MQ N
Sbjct: 704 AALIDMYAKCGSINSALQFFNQIRDKTFSVSPWNAIICGLASHGHASMCLDVFSDMQRYN 763
Query: 68 IMGDEFTIVSILTARANLRALDLGEWI-KTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126
I + T + +L+A + ++ G I + V+ DI ++D+ +E+A
Sbjct: 764 IKPNPITFIGVLSACCHAGLVEPGRRIFRIMKSAYNVEPDIKHYGCMVDLLGRAGLLEEA 823
Query: 127 QK---------DKFSWTTMIVGLAISGN---GDKALDMFSQM 156
++ D W T++ G+ G++A + + +
Sbjct: 824 EEMIRSMPMKADIVIWGTLLAACRTHGDVNIGERAAESLAGL 865
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 128 KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
K S+TTMI+GL + +AL++F M + P+++ V V+ AC+H
Sbjct: 364 KGCVSYTTMIMGLVQNECFREALEVFKDMRSDGVVPNDLTLVNVIYACSH 413
>gi|15229345|ref|NP_187126.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207287|sp|Q9SR01.1|PP212_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04750, mitochondrial; Flags: Precursor
gi|6175175|gb|AAF04901.1|AC011437_16 hypothetical protein [Arabidopsis thaliana]
gi|332640610|gb|AEE74131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 661
Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 106/188 (56%), Gaps = 10/188 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVN-RFREALTL 59
MK KD+ SW +V ++ G ++ A+ FDQMP+RD V W +++ GY + R L
Sbjct: 295 MKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKGCDQRTVREL 354
Query: 60 FQEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC 118
F EM + D T+VS+++ AN L G W+ + + ++K D F +ALIDMYC
Sbjct: 355 FYEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLVIRLQLKGDAFLSSALIDMYC 414
Query: 119 ICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C +E+A +KD WT+MI GLA GNG +AL +F +M + P+ V +
Sbjct: 415 KCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQALQLFGRMQEEGVTPNNVTLLA 474
Query: 171 VLSACTHN 178
VL+AC+H+
Sbjct: 475 VLTACSHS 482
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 10/160 (6%)
Query: 9 WTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI 68
W ++V Y+ G +A + F +MP D + MI GY + EAL L+ +M + I
Sbjct: 169 WNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGI 228
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNK--VKNDIFAGNALIDMYCICADVEKA 126
DE+T++S+L +L + LG+ + +I++ +++ NAL+DMY C + A
Sbjct: 229 EPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESGLA 288
Query: 127 --------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158
+KD SW TM+VG G+ + A +F QM +
Sbjct: 289 KRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPK 328
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 111 NALIDMYCICADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIK 162
N+L+ Y + A+K D S+ MIVG A G +AL ++ +M+ I+
Sbjct: 170 NSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGIE 229
Query: 163 PDEVAYVGVLSACTH 177
PDE + +L C H
Sbjct: 230 PDEYTVLSLLVCCGH 244
>gi|326491225|dbj|BAK05712.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 538
Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats.
Identities = 77/190 (40%), Positives = 110/190 (57%), Gaps = 19/190 (10%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQM-PERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
DV++ A+V Y G A +CF M P ++ V W MI + R +EAL LF+EM
Sbjct: 198 DVVACNALVDMYAKCGDSAAALRCFRTMVPTKNLVTWNTMISAHARAGELQEALELFREM 257
Query: 64 Q-----TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAG---NALID 115
TS+ + D+ T V++L A A L ALD G W+ YI + D AG NALID
Sbjct: 258 LQQQGCTSSPLPDDATFVAVLGACARLGALDAGRWVHAYI--VRTGRDAAAGVVGNALID 315
Query: 116 MYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 167
MY C VE+A ++D +++T+MI GLA+ G G++AL +F M +A ++P+EV
Sbjct: 316 MYAKCGAVEQAAEVFDAMTRRDVYTYTSMISGLAMHGRGEEALALFGDMRQARVRPNEVT 375
Query: 168 YVGVLSACTH 177
++GVLSAC H
Sbjct: 376 FLGVLSACCH 385
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 56/183 (30%), Positives = 83/183 (45%), Gaps = 18/183 (9%)
Query: 11 AIVSRYINRGQVDIARQCFDQM---PERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN 67
A+V+ Y+ G+ +A F P D V WTAM+ + R+ FREA LF M
Sbjct: 99 ALVALYLACGRRGVASDLFAGAGGGPAPDVVSWTAMVTWHARLGLFREAAELFLAMADDG 158
Query: 68 IMGDEFTIVSILTARANLRA-LDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126
+ + + A L L + + + V D+ A NAL+DMY C D A
Sbjct: 159 AVVVDAVAAAAAFAACAGAGELVLAREVHRRVLEAGVALDVVACNALVDMYAKCGDSAAA 218
Query: 127 ---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLR-----ASIKPDEVAYVGVL 172
K+ +W TMI A +G +AL++F +ML+ +S PD+ +V VL
Sbjct: 219 LRCFRTMVPTKNLVTWNTMISAHARAGELQEALELFREMLQQQGCTSSPLPDDATFVAVL 278
Query: 173 SAC 175
AC
Sbjct: 279 GAC 281
>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 592
Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 104/181 (57%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D A+VS Y G V IAR+ FD+MPE+ V W +MI GY + +EA+ LF MQ
Sbjct: 152 DAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQ 211
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ D T VS+L+A A + A+ LG W+ YI +N ++ G AL++MY C +V
Sbjct: 212 DLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVS 271
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
KA +K+ +WT MI G + G+G +A+++F++M +P+ V +V VLSAC
Sbjct: 272 KAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACA 331
Query: 177 H 177
H
Sbjct: 332 H 332
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 8/168 (4%)
Query: 16 YINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTI 75
Y + R+ F +P+ D L+ ++I + + +E+L ++ M +NI +T
Sbjct: 62 YAAASPISYTRRLFFSIPKPDTFLFHSLITLTSKFSFPQESLLCYRRMLLANISSSNYTF 121
Query: 76 VSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--DKF-- 131
+++ + A+L A +GE I ++ D + AL+ Y V A+K DK
Sbjct: 122 SAVIKSSADLTAFSIGETIHCHVYICGYGLDAYVQAALVSFYAKSGHVMIARKVFDKMPE 181
Query: 132 ----SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+W +MI G +G G +A+++F M +KPD +V +LSAC
Sbjct: 182 KTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSAC 229
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 13/180 (7%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+V+ TA+++ Y G V AR+ FD M E++ V WTAMI GY +A+ LF EM
Sbjct: 253 NVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMS 312
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN-----KVKNDI----FAGNA--L 113
+ T V++L+A A+ +D G I T + + V++ + G A L
Sbjct: 313 FDGPRPNNVTFVAVLSACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHL 372
Query: 114 IDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+ Y + + WT M+ + N D +++ +L SI+P+ + +LS
Sbjct: 373 NEAYQFIKNTSPKEPAPAVWTAMLGACKMHKNFDLGVEVAEHLL--SIEPENPGHYVMLS 430
>gi|356558692|ref|XP_003547637.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Glycine max]
Length = 696
Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 110/195 (56%), Gaps = 18/195 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERD----------YVLWTAMIDGYLRV 50
+KNK+++SW A++S Y G D A F M + D + W+A+I G+
Sbjct: 329 IKNKNLVSWNALISSYAESGLCDEAYAAFLHMEKSDSDDHSLVRPNVISWSAVISGFAYK 388
Query: 51 NRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAG 110
R ++L LF++MQ + +M + TI S+L+ A L AL+LG + Y +N + ++I G
Sbjct: 389 GRGEKSLELFRQMQLAKVMANCVTISSVLSVCAELAALNLGRELHGYAIRNMMSDNILVG 448
Query: 111 NALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIK 162
N LI+MY C D ++ +D SW ++I G + G G+ AL F++M+RA +K
Sbjct: 449 NGLINMYMKCGDFKEGHLVFDNIEGRDLISWNSLIGGYGMHGLGENALRTFNEMIRARMK 508
Query: 163 PDEVAYVGVLSACTH 177
PD + +V +LSAC+H
Sbjct: 509 PDNITFVAILSACSH 523
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 96/227 (42%), Gaps = 55/227 (24%)
Query: 4 KDVISWTAIVSRY-INRGQVDIARQCFDQMP----ERDYVLWTAMIDGYLRVNRFREALT 58
+ ++SW +VS Y +NR + +R F +M + + V WT+++ + R + E L
Sbjct: 196 RSIVSWNTMVSGYALNRDSLGASR-VFKRMELEGLQPNSVTWTSLLSSHARCGLYDETLE 254
Query: 59 LFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY- 117
LF+ M+T I + +L+ A++ +D G+ I Y+ K ++ +F NALI Y
Sbjct: 255 LFKVMRTRGIEIGAEALAVVLSVCADMAEVDWGKEIHGYVVKGGYEDYLFVKNALIGTYG 314
Query: 118 ---------------------------------CICAD-------VEKAQKDK------- 130
+C + +EK+ D
Sbjct: 315 KHQHMGDAHKVFLEIKNKNLVSWNALISSYAESGLCDEAYAAFLHMEKSDSDDHSLVRPN 374
Query: 131 -FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
SW+ +I G A G G+K+L++F QM A + + V VLS C
Sbjct: 375 VISWSAVISGFAYKGRGEKSLELFRQMQLAKVMANCVTISSVLSVCA 421
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 81/174 (46%), Gaps = 11/174 (6%)
Query: 12 IVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI 68
+++ Y + AR+ FD +P +LW ++I + + AL L+ EM+
Sbjct: 69 LIAVYARFAFLSHARKVFDAIPLESLHHLLLWNSIIRANVSHGYHQHALELYVEMRKLGF 128
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ- 127
+ D FT+ ++ A ++L + L + + + +N + N L+ MY +E A+
Sbjct: 129 LPDGFTLPLVIRACSSLGSSYLCRIVHCHALQMGFRNHLHVVNELVGMYGKLGRMEDARQ 188
Query: 128 -------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+ SW TM+ G A++ + A +F +M ++P+ V + +LS+
Sbjct: 189 LFDGMFVRSIVSWNTMVSGYALNRDSLGASRVFKRMELEGLQPNSVTWTSLLSS 242
>gi|357124715|ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Brachypodium distachyon]
Length = 599
Score = 135 bits (339), Expect = 9e-30, Method: Composition-based stats.
Identities = 68/181 (37%), Positives = 99/181 (54%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+SWT +V G VD AR+ FD MPER+ + W AMI GY++ RF +AL +F +M+
Sbjct: 160 DVVSWTTMVGGLCRLGLVDDARKLFDGMPERNLISWNAMISGYVKAGRFLDALEVFDQMR 219
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
I G+ F S + A L G + +++++ + D A++DMYC C VE
Sbjct: 220 ALGIEGNGFVAASAVVACTGAGVLARGREVHRWVEQSGITMDEKLATAVVDMYCKCGSVE 279
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+A K SW MI GLA+ G A+++F +M R + PD+V V VL+AC
Sbjct: 280 EAWHVFKVLPTKGLTSWNCMIGGLAVHGRCKDAIELFHEMEREDVAPDDVTLVNVLTACA 339
Query: 177 H 177
H
Sbjct: 340 H 340
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 45/89 (50%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G V+ A F +P + W MI G R ++A+ LF EM+ ++
Sbjct: 266 TAVVDMYCKCGSVEEAWHVFKVLPTKGLTSWNCMIGGLAVHGRCKDAIELFHEMEREDVA 325
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYI 98
D+ T+V++LTA A+ + G YI
Sbjct: 326 PDDVTLVNVLTACAHTGMVSDGHNYFNYI 354
>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
Length = 670
Score = 135 bits (339), Expect = 9e-30, Method: Composition-based stats.
Identities = 66/183 (36%), Positives = 110/183 (60%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++DV+S+TA+V+ Y +RG ++ AR FD++P +D V W AMI GY+ ++EAL LF+E
Sbjct: 126 HRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKE 185
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M +N+ DE T+V++++A A +++LG + ++I + +++ NALID Y C +
Sbjct: 186 MMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGE 245
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+E A KD SW +I G +AL +F +MLR+ P++V + +L A
Sbjct: 246 METACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHA 305
Query: 175 CTH 177
C H
Sbjct: 306 CAH 308
Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats.
Identities = 70/177 (39%), Positives = 102/177 (57%), Gaps = 10/177 (5%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G+++ A F + +D + W +I GY +N ++EAL LFQEM S
Sbjct: 235 ALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESP 294
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDK--NKVKNDIFAGNALIDMYCICADVEKA-- 126
++ T++SIL A A+L A+D+G WI YIDK V N +LIDMY C D+E A
Sbjct: 295 NDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQ 354
Query: 127 ------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
K +W MI G A+ G + A D+FS+M + IKPD++ +VG+LSAC+H
Sbjct: 355 VFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSH 411
Score = 58.9 bits (141), Expect = 8e-07, Method: Composition-based stats.
Identities = 45/189 (23%), Positives = 78/189 (41%), Gaps = 39/189 (20%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A F+ + E + ++W M G+ AL L+ M + ++ + +T +L + A
Sbjct: 16 AISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAK 75
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------------- 127
L+A G I ++ K + D++ +LI MY +E A
Sbjct: 76 LKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTAL 135
Query: 128 ----------------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165
KD SW MI G +GN +AL++F +M++ +++PDE
Sbjct: 136 VTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDE 195
Query: 166 VAYVGVLSA 174
V V+SA
Sbjct: 196 STMVTVISA 204
>gi|125543615|gb|EAY89754.1| hypothetical protein OsI_11297 [Oryza sativa Indica Group]
Length = 648
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 69/182 (37%), Positives = 109/182 (59%), Gaps = 9/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D SW ++++ Y+ G V A++ F MP++D V WT MI G ++ ++ EALT+F MQ
Sbjct: 331 DQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQ 390
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
I DE T+VS+++A N+ +L+ G+ + YI +++ + G +LIDMY C +E
Sbjct: 391 AQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCLE 450
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI-KPDEVAYVGVLSAC 175
A ++ W +IVGLA++G K+LDMFS+M +S P+E+ + GVLSAC
Sbjct: 451 SALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPNEITFTGVLSAC 510
Query: 176 TH 177
H
Sbjct: 511 RH 512
Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 66/216 (30%), Positives = 94/216 (43%), Gaps = 39/216 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + + +++VS + RG VD AR+ FD + +D WTAMI + R +F EAL LF
Sbjct: 195 MPERGAAAVSSMVSLFGRRGMVDEARKVFDGVERKDVFTWTAMISCFQRNGKFAEALALF 254
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M+ DE +V ++ A A L GE + + + + NALI MY
Sbjct: 255 SDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSF 314
Query: 121 ADVEKAQ---------------------------------------KDKFSWTTMIVGLA 141
+V A+ KD SWTTMI G
Sbjct: 315 LNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCV 374
Query: 142 ISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+ +AL +F+ M IKPDEV V V+SACT+
Sbjct: 375 QNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTN 410
Score = 39.7 bits (91), Expect = 0.51, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 11/108 (10%)
Query: 57 LTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116
L L+ M + D +T + A A RA++ G + + ++ +++ NAL+ M
Sbjct: 91 LPLYASMSAAP---DCYTHTILAAACATRRAIEEGRQVHCHAVRHGFGRNLYLANALMSM 147
Query: 117 YCICADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQM 156
Y C + A+K D SW T++ + + D+A+ +F++M
Sbjct: 148 YSACGCLGDARKVFDAGPVWDAVSWNTILAAYVQAEDVDQAVGVFARM 195
>gi|115452665|ref|NP_001049933.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|108707812|gb|ABF95607.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548404|dbj|BAF11847.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|125586044|gb|EAZ26708.1| hypothetical protein OsJ_10614 [Oryza sativa Japonica Group]
Length = 648
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 69/182 (37%), Positives = 109/182 (59%), Gaps = 9/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D SW ++++ Y+ G V A++ F MP++D V WT MI G ++ ++ EALT+F MQ
Sbjct: 331 DQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQ 390
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
I DE T+VS+++A N+ +L+ G+ + YI +++ + G +LIDMY C +E
Sbjct: 391 AQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCLE 450
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI-KPDEVAYVGVLSAC 175
A ++ W +IVGLA++G K+LDMFS+M +S P+E+ + GVLSAC
Sbjct: 451 SALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPNEITFTGVLSAC 510
Query: 176 TH 177
H
Sbjct: 511 RH 512
Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 66/216 (30%), Positives = 94/216 (43%), Gaps = 39/216 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + + +++VS + RG VD AR+ FD + +D WTAMI + R +F EAL LF
Sbjct: 195 MPERGAAAVSSMVSLFGRRGMVDEARKVFDVVERKDVFTWTAMISCFQRNGKFAEALALF 254
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M+ DE +V ++ A A L GE + + + + NALI MY
Sbjct: 255 SDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSF 314
Query: 121 ADVEKAQ---------------------------------------KDKFSWTTMIVGLA 141
+V A+ KD SWTTMI G
Sbjct: 315 LNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCV 374
Query: 142 ISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+ +AL +F+ M IKPDEV V V+SACT+
Sbjct: 375 QNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTN 410
Score = 39.7 bits (91), Expect = 0.51, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 11/108 (10%)
Query: 57 LTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116
L L+ M + D +T + A A RA++ G + + ++ +++ NAL+ M
Sbjct: 91 LPLYASMSAAP---DCYTHTILAAACATRRAIEEGRQVHCHAVRHGFGRNLYLANALMSM 147
Query: 117 YCICADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQM 156
Y C + A+K D SW T++ + + D+A+ +F++M
Sbjct: 148 YSACGCLGDARKVFDAGPVWDAVSWNTILAAYVQAEDVDQAVGVFARM 195
>gi|22293716|dbj|BAC10060.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
Length = 631
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 106/187 (56%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+SWTA+VS Y G +D + FD MP ++ V W AMI GY +R+ EAL F
Sbjct: 270 MDQKDVVSWTAMVSAYAKIGDLDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTF 329
Query: 61 QEMQTSN-IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
Q M DE T+VS+++A A L +++ WI ++I K+ + + GNALIDM+
Sbjct: 330 QLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAK 389
Query: 120 CADVEKAQKDKF--------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C DV +A+ + +WTTMI G A +G AL +++ M R ++ D+ ++
Sbjct: 390 CGDVGRAESIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAA 449
Query: 172 LSACTHN 178
L+AC H
Sbjct: 450 LAACAHG 456
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 17/186 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++DV+SW +IV Y++ G A F+ MPER+ V W ++ G+ R+ A +F
Sbjct: 177 MVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDMVTARAVF 236
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M + N + ++S ++ A ++ D+ K D+ + A++ Y
Sbjct: 237 DRMPSRNAVSWNL-MISGYAMSGDVEA------ARSVFDRMDQK-DVVSWTAMVSAYAKI 288
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFS-QMLRASIKPDEVAYVGV 171
D++ K+ SW MI G + D+AL F ML +PDE V V
Sbjct: 289 GDLDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSV 348
Query: 172 LSACTH 177
+SAC
Sbjct: 349 VSACAQ 354
>gi|357151860|ref|XP_003575929.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g14820-like, partial [Brachypodium
distachyon]
Length = 498
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 106/185 (57%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ KD++S TA+V Y G+++IAR F+ M E+D V W+AMI Y N+ E L LF
Sbjct: 155 MQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEKDVVSWSAMISAYAENNQPSEVLNLF 214
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+MQ + DE T++S+++A AN+ +LD WI + + + + NALIDM+ C
Sbjct: 215 NKMQGCGVSPDEITMLSVISACANIGSLDKARWIHSIVGNHGFYKILSICNALIDMFSKC 274
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ A +K+ +WT+MI A+ G+G AL +F QM ++P+ V ++ +L
Sbjct: 275 GSLTLALNMFNAMPRKNVITWTSMIAAFAMHGDGPSALTLFGQMKGEGVEPNGVTFLVLL 334
Query: 173 SACTH 177
AC H
Sbjct: 335 YACCH 339
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 97/213 (45%), Gaps = 39/213 (18%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++D TA+V Y +V AR+ FD MPERD V W M+D Y +RE L L +
Sbjct: 25 DEDGFVGTALVGAYAACQRVAEARRVFDGMPERDLVAWGVMLDSYFNTQNYRETLLLLNK 84
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M+ S ++ D+ + ++L+ + R L G+ I +YI + + D +ALI+MY C D
Sbjct: 85 MKRSRVVPDQVILATVLSTCGHTRHLRSGKTIHSYIQVSDIFVDARLSSALINMYASCMD 144
Query: 123 VE---------------------------------------KAQKDKFSWTTMIVGLAIS 143
+E A+KD SW+ MI A +
Sbjct: 145 MEMADKIYSGMQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEKDVVSWSAMISAYAEN 204
Query: 144 GNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+ L++F++M + PDE+ + V+SAC
Sbjct: 205 NQPSEVLNLFNKMQGCGVSPDEITMLSVISACA 237
>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
Length = 675
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 69/178 (38%), Positives = 102/178 (57%), Gaps = 10/178 (5%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G V+ A F+ + +D V W +I GY N ++EAL LFQEM S
Sbjct: 240 ALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECP 299
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDK--NKVKNDIFAGNALIDMYCICADVEKAQ- 127
++ T++S+L A A+L A+D+G WI YIDK V N+ +LIDMY C D+E A
Sbjct: 300 NDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQ 359
Query: 128 -------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+ SW MI G A+ G + A D+FS+M ++PD++ +VG+LSAC+H+
Sbjct: 360 VFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHS 417
Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 73/187 (39%), Positives = 109/187 (58%), Gaps = 12/187 (6%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++DV+S TA+++ Y +RG AR+ FD++ ERD V W AMI GY+ R+ EAL LF+E
Sbjct: 127 HRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKE 186
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGE----WIKTYIDKNKVKNDIFAGNALIDMYC 118
M +N+ DE T+VS+++A A +++LG W+ D + + + NALID+Y
Sbjct: 187 MMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYS 246
Query: 119 ICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C DVE A KD SW T+I G + +AL +F +MLR+ P++V +
Sbjct: 247 KCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLS 306
Query: 171 VLSACTH 177
VL AC H
Sbjct: 307 VLPACAH 313
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/193 (22%), Positives = 79/193 (40%), Gaps = 39/193 (20%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A F+ + E + ++W M+ G+ + AL ++ M + + + ++ +L + A
Sbjct: 17 AISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAK 76
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK---------------- 128
+A + G I + K D + +LI MY +E A+K
Sbjct: 77 SKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTAL 136
Query: 129 -----------------------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165
D SW MI G +G ++AL++F +M+R +++PDE
Sbjct: 137 ITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDE 196
Query: 166 VAYVGVLSACTHN 178
V V+SAC +
Sbjct: 197 GTLVSVVSACAQS 209
>gi|449476231|ref|XP_004154679.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like, partial [Cucumis sativus]
Length = 472
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/187 (38%), Positives = 114/187 (60%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ ++VI A++ Y+ + A F++MP+RD V WT MI GY + EA+ +F
Sbjct: 146 LNEENVILENALLDFYVRCAYLRSAENLFEKMPKRDVVSWTTMIGGYAQSGLCEEAVRVF 205
Query: 61 QEM-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYID-KNKVKNDIFAGNALIDMYC 118
Q M + +E T+V++L+A +++ AL LG+W+ +YI+ ++ V D GNALI+MY
Sbjct: 206 QNMVHVGEAIPNEATLVNVLSACSSISALHLGQWVHSYINSRHDVIIDGNVGNALINMYV 265
Query: 119 ICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C ++E A KD SW+T+I GLA++G G +A +FS ML I PD+V ++G
Sbjct: 266 KCGNMEMAILIFKATEHKDIVSWSTIISGLAMNGLGKQAFVLFSLMLVHGISPDDVTFLG 325
Query: 171 VLSACTH 177
+LSAC+H
Sbjct: 326 LLSACSH 332
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 95/182 (52%), Gaps = 12/182 (6%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
D+ +++ YI G V A FD +P+ D V WT++I G ++ +EAL+ F M
Sbjct: 51 SDIFIQNSLLHFYILDGDVSSASLIFDSIPDPDVVSWTSIISGLSKLGFEKEALSKFLSM 110
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
N+ + T+V+ L+ ++LR L LG+ I + + ++ NAL+D Y CA +
Sbjct: 111 ---NVRPNSTTLVTALSTCSSLRCLKLGKAIHGLRMRTLNEENVILENALLDFYVRCAYL 167
Query: 124 EKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGVLSA 174
A+ +D SWTTMI G A SG ++A+ +F M+ P+E V VLSA
Sbjct: 168 RSAENLFEKMPKRDVVSWTTMIGGYAQSGLCEEAVRVFQNMVHVGEAIPNEATLVNVLSA 227
Query: 175 CT 176
C+
Sbjct: 228 CS 229
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 11/125 (8%)
Query: 60 FQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
Q + I + FT L A L G I ++ K+ +DIF N+L+ Y +
Sbjct: 6 LQPNASLPISHNHFTFTYALKACCFLHQTQKGLEIHAHLIKSGHLSDIFIQNSLLHFYIL 65
Query: 120 CADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
DV A D SWT++I GL+ G +AL F M +++P+ V
Sbjct: 66 DGDVSSASLIFDSIPDPDVVSWTSIISGLSKLGFEKEALSKFLSM---NVRPNSTTLVTA 122
Query: 172 LSACT 176
LS C+
Sbjct: 123 LSTCS 127
>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
Length = 526
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 111/183 (60%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++DV+S+TA++ Y +RG ++ A++ FD++P +D V W AMI GY ++EAL LF++
Sbjct: 151 HRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKD 210
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M +N+ DE T+V++++A A +++LG + +ID + +++ NALID+Y C +
Sbjct: 211 MMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGE 270
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
VE A KD SW T+I G +AL +F +MLR+ P++V + +L A
Sbjct: 271 VETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPA 330
Query: 175 CTH 177
C H
Sbjct: 331 CAH 333
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 104/178 (58%), Gaps = 10/178 (5%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G+V+ A F+ + +D + W +I GY +N ++EAL LFQEM S
Sbjct: 260 ALIDLYSKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESP 319
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDK--NKVKNDIFAGNALIDMYCICADVEKAQ- 127
++ T++SIL A A+L A+D+G WI YI+K V N +LIDMY C D+E A+
Sbjct: 320 NDVTMLSILPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQ 379
Query: 128 -------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+ SW MI G A+ G + A D+FS+M + I PD++ +VG+LSAC+H+
Sbjct: 380 VFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHS 437
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 81/193 (41%), Gaps = 39/193 (20%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A F+ + E + ++W M G+ + AL L+ M + ++ + +T +L + A
Sbjct: 41 AISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAK 100
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK---------------- 128
+A G+ I ++ K D++ +LI MY +E A+K
Sbjct: 101 SKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTAL 160
Query: 129 -----------------------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165
D SW MI G A +GN +AL++F M++ +++PDE
Sbjct: 161 IKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDE 220
Query: 166 VAYVGVLSACTHN 178
V V+SAC +
Sbjct: 221 STMVTVVSACAQS 233
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 30/172 (17%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T+++ Y G ++ A+Q FD M R W AMI G+ + A LF +M+ + I
Sbjct: 362 TSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGID 421
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKN-KVKNDIFAGNALIDMYCICADVEKAQK 128
D+ T V +L+A ++ LDLG I + ++ K+ + +ID+ C ++A+
Sbjct: 422 PDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAK- 480
Query: 129 DKFSWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVAYVGVLSACT-HN 178
+M+R ++PD V + +L AC HN
Sbjct: 481 --------------------------EMIRTMPMEPDGVIWCSLLKACKMHN 506
>gi|449446173|ref|XP_004140846.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 488
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 107/186 (57%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+SWT+++S Y G + AR F++MP+R+ V W +MI Y++ F+EAL LF
Sbjct: 164 MPEKNVVSWTSMISAYAKAGDLATARMFFNKMPQRNVVSWNSMISSYVQHGDFQEALDLF 223
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M + I D +T VS+ +A ++L L LG I ID + + + A ALI+MY C
Sbjct: 224 NQMLSEGITPDGYTFVSVFSACSHLGNLMLGTKIHYAID-DFSQLGVIAATALIEMYAKC 282
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
D+ +A +KD F W M+ LA+ G AL +FS M + +KP++ ++G L
Sbjct: 283 GDINRAFNLFIKIGKKDVFFWNVMLKSLALHGQAQDALKLFSLMQKQGLKPNDFTFLGAL 342
Query: 173 SACTHN 178
AC+H
Sbjct: 343 FACSHG 348
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 31/174 (17%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+ V W ++ RY + G V A++ F+ M +RD V W MI GY++V +A LF++M
Sbjct: 105 RSVEVWNRMILRYTSTGDVSGAQKLFNTMEDRDTVSWNTMISGYIKVGEVMKARELFEKM 164
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
N++ + S+++A A +A DL + + +K
Sbjct: 165 PEKNVV----SWTSMISAYA--KAGDLAT-ARMFFNK----------------------- 194
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
Q++ SW +MI G+ +ALD+F+QML I PD +V V SAC+H
Sbjct: 195 -MPQRNVVSWNSMISSYVQHGDFQEALDLFNQMLSEGITPDGYTFVSVFSACSH 247
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 71/154 (46%), Gaps = 10/154 (6%)
Query: 6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT 65
VI+ TA++ Y G ++ A F ++ ++D W M+ + ++AL LF MQ
Sbjct: 269 VIAATALIEMYAKCGDINRAFNLFIKIGKKDVFFWNVMLKSLALHGQAQDALKLFSLMQK 328
Query: 66 SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN-KVKNDIFAGNALIDMYCICADVE 124
+ ++FT + L A ++ ++ G+ I ++K K++ I ++D+ +E
Sbjct: 329 QGLKPNDFTFLGALFACSHGGMVEEGQTIFDMMEKEYKIRPRIEHFGCIVDLLSRNGRLE 388
Query: 125 KA---------QKDKFSWTTMIVGLAISGNGDKA 149
+A + D W ++ G + G+ +A
Sbjct: 389 EALDVVDKMPFEADVAIWGALLGGCKLRGDFKRA 422
>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1291
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 101/184 (54%), Gaps = 8/184 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ D+ A+V Y G ++ AR FD+M RD V WT+MI GY E L F
Sbjct: 850 SNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDL 909
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M++S ++ + +I+S+L A NL AL GEW +Y+ + + DI A++DMY C
Sbjct: 910 MRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGS 969
Query: 123 V--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+ E A KD W+ MI I G+G KA+D+F QM++A ++P V + VLSA
Sbjct: 970 LDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSA 1029
Query: 175 CTHN 178
C+H+
Sbjct: 1030 CSHS 1033
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 95/177 (53%), Gaps = 9/177 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ Y+ D A F ++P++D V W A++ GY + +++ +F+ M + I
Sbjct: 346 TALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQ 405
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK- 128
D +V IL A + L + Y+ ++ +++F G +LI++Y C + A K
Sbjct: 406 PDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKL 465
Query: 129 -------DKFSWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGVLSACTH 177
D W++MI I G G +AL++F QM++ ++++P+ V ++ +LSAC+H
Sbjct: 466 FKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSH 522
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 94/184 (51%), Gaps = 11/184 (5%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
D T + S Y + AR+ FD+ P + LW + + Y R ++ E L LF M
Sbjct: 34 HDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLM 93
Query: 64 -QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN-KVKNDIFAGNALIDMYCICA 121
T+ D FTI L A A LR L+LG+ I + KN ++ +D+F G+AL+++Y C
Sbjct: 94 ICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCG 153
Query: 122 DVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVAYVGVL 172
+ +A K D WT+M+ G + + ++AL +FSQM+ + D V V V+
Sbjct: 154 QMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVV 213
Query: 173 SACT 176
SAC
Sbjct: 214 SACA 217
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 8/168 (4%)
Query: 16 YINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTI 75
Y++ ++D A F+ +P LW MI G+ RF +L L+ +M + D+F
Sbjct: 762 YVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAF 821
Query: 76 VSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-------- 127
L + A L L G+ I ++ ND+F AL+DMY C D+E A+
Sbjct: 822 PFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAV 881
Query: 128 KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+D SWT+MI G A +G + L F M + + P+ V+ + VL AC
Sbjct: 882 RDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLAC 929
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 97/183 (53%), Gaps = 9/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
D+ +A+V Y GQ+ A + F++ D VLWT+M+ GY + N EAL LF +
Sbjct: 136 GSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQ 195
Query: 63 MQTSN-IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC--- 118
M + ++ D T+VS+++A A L + G + + + + D+ N+L+++Y
Sbjct: 196 MVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTG 255
Query: 119 ---ICADV--EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
I A++ + +KD SW+TMI A + ++AL++F +M+ +P+ V V L
Sbjct: 256 CEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQ 315
Query: 174 ACT 176
AC
Sbjct: 316 ACA 318
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 85/174 (48%), Gaps = 8/174 (4%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
++++ Y G IA F +MPE+D + W+ MI Y EAL LF EM
Sbjct: 246 SLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEP 305
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA---- 126
+ T+VS L A A R L+ G+ I + D ALIDMY C+ ++A
Sbjct: 306 NSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLF 365
Query: 127 ----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+KD SW ++ G A +G K++ +F ML I+PD VA V +L+A +
Sbjct: 366 QRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASS 419
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 28/176 (15%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D++ TAI+ Y G +D+AR FD+ +D V W+AMI Y R+A+ LF +M
Sbjct: 953 DILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMV 1012
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ + T +L+A ++ L+ G+ MY E
Sbjct: 1013 KAGVRPSHVTFTCVLSACSHSGLLEEGK-----------------------MYFQLMTEE 1049
Query: 125 KAQKDKFS-WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC-THN 178
K S + M+ L +G +A+D+ M ++PD + +L AC HN
Sbjct: 1050 FVIARKLSNYACMVDLLGRAGQLSEAVDLIENM---PVEPDASIWGSLLGACRIHN 1102
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N +V +++ Y G + A + F M RD V+W++MI Y R EAL +F +
Sbjct: 440 NSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQ 499
Query: 63 M-QTSNIMGDEFTIVSILTARANLRALDLG 91
M + S + + T +SIL+A ++ ++ G
Sbjct: 500 MVKNSTVRPNNVTFLSILSACSHAGLVEEG 529
>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Vitis vinifera]
Length = 540
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 67/176 (38%), Positives = 100/176 (56%), Gaps = 8/176 (4%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
++ Y G +D A FD+MPE D W+ M+ GY + + E L L +EMQ N+
Sbjct: 107 GLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYSQNGQAVETLKLLREMQAENVSS 166
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK----- 125
D FT+ S++ +L LDLG+W+ +YIDK VK D+ G AL+ MY C ++
Sbjct: 167 DAFTLASVVGVCGDLGVLDLGKWVHSYIDKEGVKIDVVLGTALVGMYSKCGSLDNALKVF 226
Query: 126 ---AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
A++D +W+ MI G AI G+ +KAL +F M R+ I P+ V + VLSA +H+
Sbjct: 227 QGMAERDVTTWSIMIAGYAIHGHDEKALQLFDAMKRSKIIPNCVTFTSVLSAYSHS 282
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 1/125 (0%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+ TA+V Y G +D A + F M ERD W+ MI GY +AL LF M+
Sbjct: 202 DVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEKALQLFDAMK 261
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWI-KTYIDKNKVKNDIFAGNALIDMYCICADV 123
S I+ + T S+L+A ++ ++ G I +T + K+ I ++D++C V
Sbjct: 262 RSKIIPNCVTFTSVLSAYSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMV 321
Query: 124 EKAQK 128
A K
Sbjct: 322 GHAHK 326
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 40/164 (24%), Positives = 68/164 (41%), Gaps = 8/164 (4%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G V A F + +W +I GY + A+ L+++M I + +T +L
Sbjct: 15 GHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVL 74
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY--CICADV------EKAQKDKF 131
A L L G+ + + I K + + N LI +Y C C D E + D
Sbjct: 75 NACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSA 134
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
SW+TM+ G + +G + L + +M ++ D V+ C
Sbjct: 135 SWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVC 178
>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 591
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 67/170 (39%), Positives = 103/170 (60%), Gaps = 8/170 (4%)
Query: 16 YINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTI 75
Y G + A + F+ M ERD V W +MI+G+ R EALTLF+EM + D FT+
Sbjct: 163 YAACGDTESAYKVFELMKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTV 222
Query: 76 VSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-------- 127
VS+L+A A L AL+LG + Y+ K + + N+L+D+Y C + +AQ
Sbjct: 223 VSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSE 282
Query: 128 KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
++ SWT++IVGLA++G G++AL++F +M + P E+ +VGVL AC+H
Sbjct: 283 RNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSH 332
Score = 70.1 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 8/143 (5%)
Query: 40 WTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYID 99
W +I GY + A +++M S + D T +L A + + GE I +
Sbjct: 86 WNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEAIHSVTI 145
Query: 100 KNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALD 151
+N ++ +F N+L+ +Y C D E A ++D +W +MI G A++G ++AL
Sbjct: 146 RNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALNGRPNEALT 205
Query: 152 MFSQMLRASIKPDEVAYVGVLSA 174
+F +M ++PD V +LSA
Sbjct: 206 LFREMSVEGVEPDGFTVVSLLSA 228
Score = 52.8 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 14/155 (9%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRF-REALTLF 60
KN V + +++ Y G + A++ F +M ER+ V WT++I G L VN F EAL LF
Sbjct: 252 KNSHVTN--SLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVG-LAVNGFGEEALELF 308
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+EM+ ++ E T V +L A ++ LD G E+ + ++ + I ++D+
Sbjct: 309 KEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSR 368
Query: 120 CADVEKA---------QKDKFSWTTMIVGLAISGN 145
V++A Q + W T++ I G+
Sbjct: 369 AGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGH 403
>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 691
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 107/183 (58%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ D + W++++ Y G +D AR FD++ E+D V WT+MID Y + +R+RE +LF E
Sbjct: 250 DSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSE 309
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ S +E+T +L A A+L +LG+ + Y+ + FA ++L+DMY C +
Sbjct: 310 LVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGN 369
Query: 123 VEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+E A+ D SWT++I G A +G D+AL F +L++ KPD V +V VLSA
Sbjct: 370 IESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSA 429
Query: 175 CTH 177
CTH
Sbjct: 430 CTH 432
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 103/184 (55%), Gaps = 9/184 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M N+D+ SW +V+ Y G ++ AR+ FD+M E+D WTAM+ GY++ ++ EAL L+
Sbjct: 146 MPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLY 205
Query: 61 QEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
MQ N + FT+ + A A ++ + G+ I +I + + +D ++L+DMY
Sbjct: 206 SLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGK 265
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C +++A +KD SWT+MI S + +FS+++ + +P+E + GV
Sbjct: 266 CGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGV 325
Query: 172 LSAC 175
L+AC
Sbjct: 326 LNAC 329
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 80/171 (46%), Gaps = 13/171 (7%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+++V Y G ++ A+ D P+ D V WT++I G + + EAL F + S
Sbjct: 358 SSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTK 417
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK--- 125
D T V++L+A + ++ G E+ + +K+++ + L+D+ E+
Sbjct: 418 PDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKS 477
Query: 126 ------AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPD-EVAYV 169
+ KF W +++ G + GN D A + ++ + I+P+ V YV
Sbjct: 478 VISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFK--IEPENPVTYV 526
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 17/131 (12%)
Query: 43 MIDGYLRVNRFREALTLF--QEM--QTSNIMG-----DEFTIVSILTARANLRALDLGEW 93
+++ R NRF EA+ + Q++ + ++G T +++ + RAL+ G+
Sbjct: 47 VVERLCRANRFGEAIDVLCGQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKK 106
Query: 94 IKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTMIVGLAISGN 145
+ +I + I N L+ MY C + A+K D SW M+ G A G
Sbjct: 107 VHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGL 166
Query: 146 GDKALDMFSQM 156
++A +F +M
Sbjct: 167 LEEARKLFDEM 177
>gi|347954532|gb|AEP33766.1| organelle transcript processing 82, partial [Lepidium virginicum]
Length = 464
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 106/178 (59%), Gaps = 10/178 (5%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G+++ A + F + +D + W +I G+ +N ++EAL LFQEM S
Sbjct: 245 ALMDMYSKCGEMETACRLFQGLVNKDAISWNTLIGGHTHMNLYKEALFLFQEMLRSGESP 304
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDK--NKVKNDIFAGNALIDMYCICADVEKAQ- 127
++ T++S+L+A A+L A+D+G WI YIDK V N +LIDMY C D+E A
Sbjct: 305 NDVTMLSVLSACAHLGAIDIGRWIHVYIDKRLKGVTNSSSLRTSLIDMYAKCGDIEAASQ 364
Query: 128 -------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+ SW MI G A+ G + A D+FS+M ++ I+PD++ +VG+LSAC+H+
Sbjct: 365 VFDSMLARSLSSWNAMIFGFAMHGKANAAFDLFSKMRKSGIEPDDITFVGLLSACSHS 422
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 109/183 (59%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++ V+S+TA+++ Y +RG AR+ FD++ +D V W AMI GY+ ++EAL L++E
Sbjct: 136 HRHVVSYTALITGYASRGYTKSARKLFDEILVKDIVSWNAMISGYVETFNYKEALELYKE 195
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M +N+ DE T+V++++A A ++LG + + I+ + +++ NAL+DMY C +
Sbjct: 196 MVKTNVKPDESTMVTVVSACAQSSNIELGRQVHSLIEDHGFGSNLKVVNALMDMYSKCGE 255
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+E A KD SW T+I G +AL +F +MLR+ P++V + VLSA
Sbjct: 256 METACRLFQGLVNKDAISWNTLIGGHTHMNLYKEALFLFQEMLRSGESPNDVTMLSVLSA 315
Query: 175 CTH 177
C H
Sbjct: 316 CAH 318
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T+++ Y G ++ A Q FD M R W AMI G+ + A LF +M+ S I
Sbjct: 347 TSLIDMYAKCGDIEAASQVFDSMLARSLSSWNAMIFGFAMHGKANAAFDLFSKMRKSGIE 406
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKN-KVKNDIFAGNALIDMYCICADVEKA 126
D+ T V +L+A ++ LDLG I + + ++ K+ + +ID+ CA ++A
Sbjct: 407 PDDITFVGLLSACSHSGMLDLGRHIFSSMTQDYKITPKLEHYGCMIDLLGQCALFKEA 464
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 78/190 (41%), Gaps = 39/190 (20%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A F+ + E + ++W M G+ + AL L+ M + ++ + ++ +L + A
Sbjct: 26 AISVFETIEEPNLLIWNTMFRGHALNSDSVSALKLYVCMISLGLLPNSYSFPFLLKSCAK 85
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK---------------- 128
+A G+ I ++ K D++ +LI MY +E A K
Sbjct: 86 SKAFREGQQIHGHVVKLGYDLDMYVHTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTAL 145
Query: 129 -----------------------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165
D SW MI G + N +AL+++ +M++ ++KPDE
Sbjct: 146 ITGYASRGYTKSARKLFDEILVKDIVSWNAMISGYVETFNYKEALELYKEMVKTNVKPDE 205
Query: 166 VAYVGVLSAC 175
V V+SAC
Sbjct: 206 STMVTVVSAC 215
>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Vitis vinifera]
Length = 677
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 66/186 (35%), Positives = 107/186 (57%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ SW ++++ ++ G +D AR+ F QMPE++ V WT MI+G+ + +AL++F
Sbjct: 234 MPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMF 293
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M + ++ T+VS L A + AL +GE I Y+ N + + G AL+DMY C
Sbjct: 294 WRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKC 353
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+++ A KD +W+ MI G AI G D+AL F +M A I PDEV ++ +L
Sbjct: 354 GNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAIL 413
Query: 173 SACTHN 178
+AC+H+
Sbjct: 414 TACSHS 419
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 52/241 (21%), Positives = 88/241 (36%), Gaps = 74/241 (30%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T ++S + +D A F + ++ A+I G +RF +++ F M +I
Sbjct: 76 TQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIR 135
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY------------ 117
D T+ +L + A L + LG + + K ++ D F +L+DMY
Sbjct: 136 PDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQL 195
Query: 118 -----------------------CICADVEKA--------QKDKFSWTTMIVGLAISG-- 144
C D+ KA +++ SW ++I G +G
Sbjct: 196 FDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDL 255
Query: 145 ---------------------------NGD--KALDMFSQMLRASIKPDEVAYVGVLSAC 175
NGD KAL MF +ML ++P+++ V L AC
Sbjct: 256 DRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLAC 315
Query: 176 T 176
T
Sbjct: 316 T 316
Score = 45.4 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G + A + F + +D + W+ MI G+ F +AL F +M+++ I
Sbjct: 344 TALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGIN 403
Query: 70 GDEFTIVSILTARANLRALDLG 91
DE ++ILTA ++ +D G
Sbjct: 404 PDEVIFLAILTACSHSGNVDQG 425
>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
Length = 514
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 110/185 (59%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + +W A+++ + + A + F +M ERD V WTA+I GY + E+L +F
Sbjct: 71 MSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVF 130
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M+ + + D F + S+L+A A+L AL+LG Y+ ++ DI G+AL+DMY
Sbjct: 131 NQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKS 190
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E A Q+++ SW ++I G A G G+ A+ +F QML+A IKP+E+++VGVL
Sbjct: 191 GSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVL 250
Query: 173 SACTH 177
SAC+H
Sbjct: 251 SACSH 255
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 39/153 (25%)
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M + ++FT+ +++ A A++ +L+ G+ YI K ++D+ AL+ MY C
Sbjct: 1 MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60
Query: 123 VEKA---------------------------------------QKDKFSWTTMIVGLAIS 143
+E A ++D SWT +I G A +
Sbjct: 61 LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120
Query: 144 GNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
G GD++L++F+QM + +K D VLSAC
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACA 153
>gi|115471447|ref|NP_001059322.1| Os07g0260000 [Oryza sativa Japonica Group]
gi|113610858|dbj|BAF21236.1| Os07g0260000 [Oryza sativa Japonica Group]
Length = 750
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 106/187 (56%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+SWTA+VS Y G +D + FD MP ++ V W AMI GY +R+ EAL F
Sbjct: 270 MDQKDVVSWTAMVSAYAKIGDLDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTF 329
Query: 61 QEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
Q M DE T+VS+++A A L +++ WI ++I K+ + + GNALIDM+
Sbjct: 330 QLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAK 389
Query: 120 CADVEKAQKDKF--------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C DV +A+ + +WTTMI G A +G AL +++ M R ++ D+ ++
Sbjct: 390 CGDVGRAESIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAA 449
Query: 172 LSACTHN 178
L+AC H
Sbjct: 450 LAACAHG 456
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 17/184 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++DV+SW +IV Y++ G A F+ MPER+ V W ++ G+ R+ A +F
Sbjct: 177 MVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDMVTARAVF 236
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M + N + ++S ++ A ++ D+ K D+ + A++ Y
Sbjct: 237 DRMPSRNAVSWNL-MISGYAMSGDVEA------ARSVFDRMDQK-DVVSWTAMVSAYAKI 288
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFS-QMLRASIKPDEVAYVGV 171
D++ K+ SW MI G + D+AL F ML +PDE V V
Sbjct: 289 GDLDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSV 348
Query: 172 LSAC 175
+SAC
Sbjct: 349 VSAC 352
>gi|255581953|ref|XP_002531775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528611|gb|EEF30631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 498
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 103/182 (56%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
++ ++ +++S Y+++G VD AR FDQM +D W+A+I G + EAL LF++M
Sbjct: 151 ENTLAKNSMISGYLSKGHVDKARAMFDQMKAKDVASWSAIITGCTKNGMHTEALALFEDM 210
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
S+ + +E +VS+L+A A+L AL G WI YID+ I ALIDMY C D+
Sbjct: 211 MVSHTLPNESALVSLLSACAHLGALHQGRWIHAYIDRIGADMSIRLSTALIDMYAKCGDI 270
Query: 124 EKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ K D +W +I G AI G K ++F +ML I P+ V +V +LSAC
Sbjct: 271 QSGYKFFRKMPRRDIVTWGAIISGFAIYGQAKKCFELFEEMLADGIYPNGVIFVAILSAC 330
Query: 176 TH 177
+H
Sbjct: 331 SH 332
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 86/185 (46%), Gaps = 14/185 (7%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N + ++ Y+ ++ AR F+++P D ++ MI G + R ++L LF E
Sbjct: 18 NHHSLCGRRLLESYVTMSEISYARSIFERIPYLDVFVYNTMIRGLMLGKRPYDSLLLFNE 77
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI--- 119
+ + D +T +L A +N +AL G+ + I K + + ++LI MY
Sbjct: 78 LLLGCLKPDNYTYTFVLKACSNQKALPEGKQVHCQIIKAGISPNTHIHSSLIHMYTSSGS 137
Query: 120 -----CADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA-YVGVLS 173
C E ++++ + +MI G G+ DKA MF QM K +VA + +++
Sbjct: 138 IVEAECVLREFSEENTLAKNSMISGYLSKGHVDKARAMFDQM-----KAKDVASWSAIIT 192
Query: 174 ACTHN 178
CT N
Sbjct: 193 GCTKN 197
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 26/170 (15%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ Y G + + F +MP RD V W A+I G+ + ++ LF+EM I
Sbjct: 258 TALIDMYAKCGDIQSGYKFFRKMPRRDIVTWGAIISGFAIYGQAKKCFELFEEMLADGIY 317
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
+ V+IL+A ++ Y+++ K ++ ++D+ I +E
Sbjct: 318 PNGVIFVAILSACSH----------AGYVEEGK----LYFNQMMVDL-GIRPSIEH---- 358
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC-THN 178
+ M+ L +G +A + M KP+ V + +LSAC THN
Sbjct: 359 ---YGCMVDLLGRAGRLKEAEEFIISMPE---KPNSVIWGSMLSACRTHN 402
>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 109/177 (61%), Gaps = 9/177 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT-SNI 68
+A+V+ Y G + ARQ FD++ ++D W+A+I GY++ NR EAL LF+E+ SN+
Sbjct: 219 SALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNM 278
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ- 127
+E TI+++++A A L L+ G W+ YI + + + + N+LIDM+ C D++ A+
Sbjct: 279 RPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKR 338
Query: 128 -------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
KD SW +M+ G A+ G G +AL F M ++PDE+ ++GVL+AC+H
Sbjct: 339 IFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSH 395
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 106/184 (57%), Gaps = 9/184 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + D+ T +++ Y G + AR F++M R+ V+WT+MI GY++ + EAL L+
Sbjct: 109 MLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLY 168
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++M+ DE T+ ++++A A L+ L +G + ++I + +K G+AL++MY C
Sbjct: 169 KKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKC 228
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGV 171
D++ A+ KD ++W+ +I G + +AL +F ++ S ++P+EV + V
Sbjct: 229 GDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAV 288
Query: 172 LSAC 175
+SAC
Sbjct: 289 ISAC 292
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 11/179 (6%)
Query: 8 SWTAIVSRYINRGQVDI--ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-Q 64
S +++ ++ G + + A F E D + W +M+ ++ N R AL + EM +
Sbjct: 12 SLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLE 71
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
S + D FT S+L A L +G+ + + K + +D++ L++MY C D++
Sbjct: 72 RSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLK 131
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
A ++K WT+MI G + ++AL ++ +M PDEV ++SAC
Sbjct: 132 SARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSAC 190
>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 640
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 111/185 (60%), Gaps = 9/185 (4%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
++ +V+ W ++ Y+ G AR FD+M +R V W MI GY + F++A+ +F+
Sbjct: 197 RDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFR 256
Query: 62 EMQTS-NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM+ +I + T+VS+L A + L +L+LGEW+ Y + + ++ D G+ALIDMY C
Sbjct: 257 EMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKC 316
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+EKA +++ +W+ MI G AI G A+D F +M +A ++P +VAY+ +L
Sbjct: 317 GIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLL 376
Query: 173 SACTH 177
+AC+H
Sbjct: 377 TACSH 381
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 84/217 (38%), Gaps = 57/217 (26%)
Query: 17 INRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFRE--ALTLFQEMQTSN-IMGDEF 73
++ +D A + F+QMP+R+ W +I G+ + + A+TLF EM + I + F
Sbjct: 63 LHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRF 122
Query: 74 TIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA------- 126
T S+L A A + G+ I K D F + L+ MY IC ++ A
Sbjct: 123 TFPSVLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKN 182
Query: 127 ----------------------------------------------QKDKFSWTTMIVGL 140
Q+ SW TMI G
Sbjct: 183 IIEREMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGY 242
Query: 141 AISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSACT 176
+ +G A+++F +M + I+P+ V V VL A +
Sbjct: 243 SQNGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVS 279
Score = 39.7 bits (91), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 48/87 (55%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + +A++ Y G ++ A F+++P + + W+AMI+G+ + +A+ F +M+
Sbjct: 302 DDVLGSALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMR 361
Query: 65 TSNIMGDEFTIVSILTARANLRALDLG 91
+ + + +++LTA ++ ++ G
Sbjct: 362 QAGVRPSDVAYINLLTACSHAGLVEEG 388
>gi|356498922|ref|XP_003518295.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Glycine max]
Length = 682
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 109/183 (59%), Gaps = 9/183 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
K+ ++W A++S Y G + +AR F++MPER+ V W +MI GY + +A+ LF+EM
Sbjct: 329 KNSVTWNAMISAYARVGDLSLARDLFNKMPERNTVSWNSMIAGYAQNGESLKAIQLFKEM 388
Query: 64 QTS-NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+S + DE T+VS+ +A +L L LG W + + +N +K I N+LI MY C
Sbjct: 389 ISSKDSKPDEVTMVSVFSACGHLGRLGLGNWAVSILHENHIKLSISGYNSLIFMYLRCGS 448
Query: 123 VEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+E A+ KD S+ T+I GLA G+G +++ + S+M I PD + Y+GVL+A
Sbjct: 449 MEDARITFQEMATKDLVSYNTLISGLAAHGHGTESIKLMSKMKEDGIGPDRITYIGVLTA 508
Query: 175 CTH 177
C+H
Sbjct: 509 CSH 511
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 103/215 (47%), Gaps = 41/215 (19%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
K+VI+WT +V+ + ++ AR FD+MPER W AM+ GY + +E + LF +M
Sbjct: 196 KNVITWTTMVTGHAKMRNLETARMYFDEMPERRVASWNAMLSGYAQSGAAQETVRLFDDM 255
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+S DE T V++L++ ++L L E I +D+ +++ F AL+DM+ C ++
Sbjct: 256 LSSGNEPDETTWVTVLSSCSSLGDPCLAESIVRKLDRMNFRSNYFVKTALLDMHAKCGNL 315
Query: 124 EKAQK----------------------------------------DKFSWTTMIVGLAIS 143
E AQK + SW +MI G A +
Sbjct: 316 EVAQKIFEQLGVYKNSVTWNAMISAYARVGDLSLARDLFNKMPERNTVSWNSMIAGYAQN 375
Query: 144 GNGDKALDMFSQMLRAS-IKPDEVAYVGVLSACTH 177
G KA+ +F +M+ + KPDEV V V SAC H
Sbjct: 376 GESLKAIQLFKEMISSKDSKPDEVTMVSVFSACGH 410
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 29/166 (17%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
AI+ Y G +++AR+ FD+MP+R W +I GY + +EA LF M S
Sbjct: 139 AIMGIYAKYGCIELARKLFDEMPDRTAADWNVIISGYWKCGNEKEATRLFCMMGESE--K 196
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDK 130
+ T +++T A +R L E + Y D E ++
Sbjct: 197 NVITWTTMVTGHAKMRNL---ETARMYFD------------------------EMPERRV 229
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
SW M+ G A SG + + +F ML + +PDE +V VLS+C+
Sbjct: 230 ASWNAMLSGYAQSGAAQETVRLFDDMLSSGNEPDETTWVTVLSSCS 275
>gi|357126462|ref|XP_003564906.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 582
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 66/183 (36%), Positives = 101/183 (55%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N+D++ W +++ Y +G++D AR F++MPER+ + W+ ++DGY+R EAL LFQ
Sbjct: 234 NRDLVCWCSMIDGYARQGRMDEARALFEEMPERNVISWSIVVDGYVRCGEPSEALELFQR 293
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M I D V TA A L AL+ G W+ +Y++K KV D+ ALIDMY C
Sbjct: 294 MLRCGIKPDRVAAVGAFTACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYMKCGR 353
Query: 123 VEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
++ + K +W MI+GL G A+ +F QM D+++ + VL+A
Sbjct: 354 LDLGKLIFESMPDKSVVTWNVMIIGLGTHSCGLHAVKLFYQMEAEGAPIDDLSVLAVLTA 413
Query: 175 CTH 177
CTH
Sbjct: 414 CTH 416
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 15/131 (11%)
Query: 35 RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARA-NLRALDL-GE 92
RD W +I + + R AL F M+ + + D +T ++L A A + L + E
Sbjct: 76 RDAFPWNTLIRLHAPASP-RNALAYFACMRRAAVEPDAYTFPAVLKACACGVLGLPVHAE 134
Query: 93 WIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK-------DKFSWTTMIVGLAISGN 145
++T +D D+F NAL+ YC D +K D SW +M+ G G
Sbjct: 135 AVRTGMD-----GDLFTRNALVSFYCRIGDCRSGRKVFDHGARDLVSWNSMVAGYVACGE 189
Query: 146 GDKALDMFSQM 156
+ A ++F M
Sbjct: 190 LELAQELFDGM 200
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 126 AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
A +D F W T+I L + AL F+ M RA+++PD + VL AC
Sbjct: 74 ASRDAFPWNTLI-RLHAPASPRNALAYFACMRRAAVEPDAYTFPAVLKAC 122
>gi|222636781|gb|EEE66913.1| hypothetical protein OsJ_23761 [Oryza sativa Japonica Group]
Length = 595
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 106/187 (56%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+SWTA+VS Y G +D + FD MP ++ V W AMI GY +R+ EAL F
Sbjct: 149 MDQKDVVSWTAMVSAYAKIGDLDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTF 208
Query: 61 QEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
Q M DE T+VS+++A A L +++ WI ++I K+ + + GNALIDM+
Sbjct: 209 QLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAK 268
Query: 120 CADVEKAQKDKF--------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C DV +A+ + +WTTMI G A +G AL +++ M R ++ D+ ++
Sbjct: 269 CGDVGRAESIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAA 328
Query: 172 LSACTHN 178
L+AC H
Sbjct: 329 LAACAHG 335
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 72/165 (43%), Gaps = 16/165 (9%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
ARQ FD+M +RD V W +++ Y+ A+ F+ M N++ T+V+ N
Sbjct: 69 ARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWN-TVVAGNAVSWN 127
Query: 85 LRALDLG-----EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKF 131
L E ++ D+ K D+ + A++ Y D++ K+
Sbjct: 128 LMISGYAMSGDVEAARSVFDRMDQK-DVVSWTAMVSAYAKIGDLDTVNELFDHMPVKNLV 186
Query: 132 SWTTMIVGLAISGNGDKALDMFS-QMLRASIKPDEVAYVGVLSAC 175
SW MI G + D+AL F ML +PDE V V+SAC
Sbjct: 187 SWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSAC 231
>gi|357467943|ref|XP_003604256.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505311|gb|AES86453.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 670
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 107/185 (57%), Gaps = 8/185 (4%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
K+++ ++ Y+ V A++ FD++PE+D V WT+MI G ++ +E+L LF
Sbjct: 313 HGKELVVSNTLMDMYVKCESVTDAKRLFDEIPEKDIVSWTSMISGLVQYQCPQESLDLFY 372
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
EM S D + S+L+A A+L LD G W+ YID +++K D+ G +LIDMY C
Sbjct: 373 EMLGSGFEPDGVILTSVLSACASLGLLDYGRWVHEYIDHSRIKWDVHIGTSLIDMYAKCG 432
Query: 122 DVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+E AQ K+ +W I GLAI+G+G +AL F ++ + +P+E+ ++ V S
Sbjct: 433 CIEMAQQMFNLLPSKNIRTWNAYIGGLAINGHGQEALKQFGYLVESGTRPNEITFLAVFS 492
Query: 174 ACTHN 178
AC H+
Sbjct: 493 ACCHS 497
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 89/179 (49%), Gaps = 11/179 (6%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ + V Y G A + FD MP RD V WT +I GY++ F +A+ LF M
Sbjct: 218 DMFVQNSFVHVYSICGDTVGASKVFDFMPVRDVVSWTGLISGYMKAGLFNDAVALFLRM- 276
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV- 123
++ + T VSIL A L L+LG+ I + K ++ N L+DMY C V
Sbjct: 277 --DVAPNAATFVSILGACGKLGCLNLGKGIHGLVSKYPHGKELVVSNTLMDMYVKCESVT 334
Query: 124 -------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E +KD SWT+MI GL ++LD+F +ML + +PD V VLSAC
Sbjct: 335 DAKRLFDEIPEKDIVSWTSMISGLVQYQCPQESLDLFYEMLGSGFEPDGVILTSVLSAC 393
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 11/141 (7%)
Query: 43 MIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK 102
+I GY N A+ +++ + + + D +T+ ++L + A + + I T K
Sbjct: 155 IISGYGAGNFPWAAIRIYRWVVGNGFVPDVYTVPAVLKSCARFSGIAEVKQIHTLAVKTD 214
Query: 103 VKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFS 154
+ D+F N+ + +Y IC D A K D SWT +I G +G + A+ +F
Sbjct: 215 LWCDMFVQNSFVHVYSICGDTVGASKVFDFMPVRDVVSWTGLISGYMKAGLFNDAVALF- 273
Query: 155 QMLRASIKPDEVAYVGVLSAC 175
LR + P+ +V +L AC
Sbjct: 274 --LRMDVAPNAATFVSILGAC 292
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV T+++ Y G +++A+Q F+ +P ++ W A I G +EAL F +
Sbjct: 417 DVHIGTSLIDMYAKCGCIEMAQQMFNLLPSKNIRTWNAYIGGLAINGHGQEALKQFGYLV 476
Query: 65 TSNIMGDEFTIVSILTARANLRALDLG 91
S +E T +++ +A + +D G
Sbjct: 477 ESGTRPNEITFLAVFSACCHSGLVDEG 503
>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 605
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 105/186 (56%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D++SW+ +V Y G +D+AR FD+ P ++ VLWT +I GY + +EA+ L
Sbjct: 247 MAERDIVSWSTMVCGYSKNGDMDMARMLFDRCPVKNLVLWTTIISGYAEKGQVKEAMNLC 306
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM+ S + D+ +SIL A A L LG+ + +++ + N+ IDMY C
Sbjct: 307 DEMEKSGLRLDDGFFISILAACAESGMLGLGKKMHDSFLRSRFRCSTKVLNSFIDMYAKC 366
Query: 121 ADVE---------KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
V+ K +KD SW +MI G I G+G+K++++F+ M+R KPD ++G+
Sbjct: 367 GCVDDAFRVFNGMKTEKDLVSWNSMIHGFGIHGHGEKSIELFNTMVREGFKPDRYTFIGL 426
Query: 172 LSACTH 177
L ACTH
Sbjct: 427 LCACTH 432
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 84/176 (47%), Gaps = 31/176 (17%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ +DV+SW ++V + G +D A + FD+MPERD V W M+DG+ + +A LF
Sbjct: 185 MEERDVVSWNSMVGGLVKNGDLDGALKVFDEMPERDRVSWNTMLDGFTKAGEMDKAFKLF 244
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M +I+ T+V + ++ + + D+ VKN +
Sbjct: 245 ERMAERDIVSWS-TMVCGYSKNGDM------DMARMLFDRCPVKNLVL------------ 285
Query: 121 ADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
WTT+I G A G +A+++ +M ++ ++ D+ ++ +L+AC
Sbjct: 286 ------------WTTIISGYAEKGQVKEAMNLCDEMEKSGLRLDDGFFISILAACA 329
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ---EMQTSNI 68
+++ Y + A F+Q+P+ + L+ +I Y +L F +M +
Sbjct: 60 LIASYSLTNNLSSAVNVFNQVPDPNVHLYNYLIRAYSLSGNESNSLCAFGVLLKMHVDGV 119
Query: 69 MGDEFTIVSILTA-RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA- 126
+ D FT +L + L L + + +++K DIF N+LID YC C DVE A
Sbjct: 120 LADNFTYPFLLKGCNGSSSWLSLVKMVHAHVEKLGFYWDIFVPNSLIDCYCRCGDVEMAM 179
Query: 127 -------QKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
++D SW +M+ GL +G+ D AL +F +M
Sbjct: 180 KVFSGMEERDVVSWNSMVGGLVKNGDLDGALKVFDEM 216
>gi|224136906|ref|XP_002322445.1| predicted protein [Populus trichocarpa]
gi|222869441|gb|EEF06572.1| predicted protein [Populus trichocarpa]
Length = 531
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 105/175 (60%), Gaps = 8/175 (4%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y+ + +Q FD++PE+D V WT++I G ++ +E L LF ++Q+S I
Sbjct: 181 ALMDMYVKCESLPEEKQVFDELPEKDIVSWTSIICGMVQCKFPKEVLELFCDVQSSGIEP 240
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA---- 126
D + S+L+ARA+ ALD G ++ YID +K DI G A++DMY C +E A
Sbjct: 241 DGIILTSVLSARASPGALDYGRLVREYIDHKAIKWDIQIGTAVVDMYAKCGCIEMAMQIF 300
Query: 127 ----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
K+ +W M+ GLA+ G+G KAL +F +M+R ++P+EV ++ L+AC H
Sbjct: 301 NVMPHKNVLTWNAMLNGLAMHGHGQKALQLFEEMVREGMRPNEVTFLVTLTACCH 355
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ TA+V Y G +++A Q F+ MP ++ + W AM++G ++AL LF+EM
Sbjct: 276 DIQIGTAVVDMYAKCGCIEMAMQIFNVMPHKNVLTWNAMLNGLAMHGHGQKALQLFEEMV 335
Query: 65 TSNIMGDEFTIVSILTA 81
+ +E T + LTA
Sbjct: 336 REGMRPNEVTFLVTLTA 352
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 70/178 (39%), Gaps = 44/178 (24%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ ++V Y G +D A + FD+M RD V WT +I Y + +
Sbjct: 110 DIYVENSLVHFYSVCGSLDDASRVFDEMLVRDAVSWTGVI--YPGIKGY----------- 156
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV- 123
L LG+ I I + + NAL+DMY C +
Sbjct: 157 -----------------------LILGKGIHGLIIERGFGLGLEVSNALMDMYVKCESLP 193
Query: 124 -------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
E +KD SWT++I G+ + L++F + + I+PD + VLSA
Sbjct: 194 EEKQVFDELPEKDIVSWTSIICGMVQCKFPKEVLELFCDVQSSGIEPDGIILTSVLSA 251
Score = 39.3 bits (90), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 73 FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----- 127
FT ++L + A A+D G + I K DI+ N+L+ Y +C ++ A
Sbjct: 77 FTFPAVLKSCAKFMAVDEGRQVHGVIAKMDFVCDIYVENSLVHFYSVCGSLDDASRVFDE 136
Query: 128 ---KDKFSWTTMIV----GLAISGNGDKAL 150
+D SWT +I G I G G L
Sbjct: 137 MLVRDAVSWTGVIYPGIKGYLILGKGIHGL 166
>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 675
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 112/187 (59%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ +DV SWT++++ Y G + AR+ FD+MPER+ V W AMI GY + ++ EAL LF
Sbjct: 314 MERRDVFSWTSLLNGYAKNGDLGSARKLFDEMPERNIVSWNAMIAGYSQNSQPMEALELF 373
Query: 61 QEM-QTSNIMGDEFTIVSILTARANLRALDLGEWIK-TYIDKNKVKNDIFAGNALIDMYC 118
M ++ E T+V +L+A L L++G+ I +++K ++ + NA++DMY
Sbjct: 374 HNMVDVVGLVPTEDTLVCVLSASGQLGCLEMGQEIHCNHVNKIGIQVSLILKNAVMDMYA 433
Query: 119 ICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C ++ A +K+ SW +MI A G+ KAL +F QM+ + +KPD + ++G
Sbjct: 434 KCGSIDAAAKLFHSMPEKNLVSWNSMISAYASYGHAKKALTLFDQMIGSGLKPDHITFIG 493
Query: 171 VLSACTH 177
VLSAC++
Sbjct: 494 VLSACSY 500
Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 90/167 (53%), Gaps = 8/167 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ D+ ++ Y+ G + ARQ FD+ +D V WT MI+GY R N EA+ LF
Sbjct: 184 DSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYARNNWLDEAIALFNS 243
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M +S++ +E T++++L+A + ++G+ + +I + + + NA++DMY C
Sbjct: 244 MLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKDITCSLNLLNAMLDMYVKCGC 303
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI 161
+ A ++D FSWT+++ G A +G+ A +F +M +I
Sbjct: 304 LTTAREIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLFDEMPERNI 350
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 8/167 (4%)
Query: 18 NRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVS 77
+ G + A FDQ + W MI GY + N + F++M + D + V
Sbjct: 98 DSGDIHYAHLIFDQTELPNCFFWNTMIKGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVF 157
Query: 78 ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKD 129
L A +G + + I K +D+F N LI Y + E + KD
Sbjct: 158 ALKACGQFAEKIVGMAVHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKD 217
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+WTTMI G A + D+A+ +F+ ML + +KP+EV + +LSAC+
Sbjct: 218 VVTWTTMINGYARNNWLDEAIALFNSMLSSDVKPNEVTMIALLSACS 264
>gi|449442521|ref|XP_004139030.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like isoform 1 [Cucumis sativus]
gi|449442523|ref|XP_004139031.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like isoform 2 [Cucumis sativus]
Length = 517
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 114/187 (60%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ ++VI A++ Y+ + A F++MP+RD V WT MI GY + EA+ +F
Sbjct: 191 LNEENVILENALLDFYVRCAYLRSAENLFEKMPKRDVVSWTTMIGGYAQSGLCEEAVRVF 250
Query: 61 QEM-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYID-KNKVKNDIFAGNALIDMYC 118
Q M + +E T+V++L+A +++ AL LG+W+ +YI+ ++ V D GNALI+MY
Sbjct: 251 QNMVHVGEAIPNEATLVNVLSACSSISALHLGQWVHSYINSRHDVIIDGNVGNALINMYV 310
Query: 119 ICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C ++E A KD SW+T+I GLA++G G +A +FS ML + PD++ ++G
Sbjct: 311 KCGNMEMAILIFKAIEHKDIVSWSTIISGLAMNGLGKQAFVLFSLMLVHGVSPDDITFLG 370
Query: 171 VLSACTH 177
+LSAC+H
Sbjct: 371 LLSACSH 377
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 96/181 (53%), Gaps = 12/181 (6%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ +++ YI G V A FD +P+ D V WT++I G ++ +EAL+ F M
Sbjct: 97 DIFIQNSLLHFYILDGDVSSASLIFDSIPDPDVVSWTSIISGLSKLGFEKEALSKFLSM- 155
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
N+ + T+V+ L+A ++LR L LG+ I + + ++ NAL+D Y CA +
Sbjct: 156 --NVRPNSTTLVTALSACSSLRCLKLGKAIHGLRMRTLNEENVILENALLDFYVRCAYLR 213
Query: 125 KAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGVLSAC 175
A+ +D SWTTMI G A SG ++A+ +F M+ P+E V VLSAC
Sbjct: 214 SAENLFEKMPKRDVVSWTTMIGGYAQSGLCEEAVRVFQNMVHVGEAIPNEATLVNVLSAC 273
Query: 176 T 176
+
Sbjct: 274 S 274
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 11/129 (8%)
Query: 56 ALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID 115
L L+ +M + FT L A L G I ++ K+ +DIF N+L+
Sbjct: 47 GLFLYNQMLRYPSSHNHFTFTYALKACCFLHQTQKGLEIHAHLIKSGHLSDIFIQNSLLH 106
Query: 116 MYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 167
Y + DV A D SWT++I GL+ G +AL F M +++P+
Sbjct: 107 FYILDGDVSSASLIFDSIPDPDVVSWTSIISGLSKLGFEKEALSKFLSM---NVRPNSTT 163
Query: 168 YVGVLSACT 176
V LSAC+
Sbjct: 164 LVTALSACS 172
>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Vitis vinifera]
Length = 654
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 105/183 (57%), Gaps = 9/183 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD ISW +++ Y G ++IA F+ MP RD V W ++I GY + LF+ M
Sbjct: 294 KDTISWNTMIAGYAKVGNLEIAHNFFEDMPCRDLVSWNSIIAGYAQKGDCLMVQRLFENM 353
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
NI D TI+++++A A + AL G WI ++ + ++K D F G+A IDMY C +
Sbjct: 354 VAENIWPDFVTIINLVSAAAEIGALHHGRWIHGWVVRMQMKIDAFLGSAFIDMYWKCGSI 413
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
++A +KD WTTMI G A G G KAL +F +M + + P++V +V VL+AC
Sbjct: 414 KRACMVFREVTEKDVTVWTTMITGFAFHGYGSKALQLFYEM-QEYVMPNQVTFVAVLTAC 472
Query: 176 THN 178
+H+
Sbjct: 473 SHS 475
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 73/151 (48%), Gaps = 10/151 (6%)
Query: 16 YINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTI 75
Y+ ++ +A Q F QM D V + MI GY + EAL EM + DEFT+
Sbjct: 172 YLENEKMGLAYQVFQQMAAPDAVSFNIMIFGYAKKGHNIEALKFLHEMVGLGLKPDEFTM 231
Query: 76 VSILTARANLRALDLGEWIKTYIDKNKV--KNDIFAGNALIDMYCICADVEKAQ------ 127
+ +L L LG+ + +I++ + +++ NAL+DMY C ++ AQ
Sbjct: 232 LGLLICCGRLGDAQLGKSVHAWIERRGLIKSSNLILNNALLDMYVKCKELRIAQSIFNVI 291
Query: 128 --KDKFSWTTMIVGLAISGNGDKALDMFSQM 156
KD SW TMI G A GN + A + F M
Sbjct: 292 VRKDTISWNTMIAGYAKVGNLEIAHNFFEDM 322
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ A D S+ MI G A G+ +AL +M+ +KPDE +G+L C
Sbjct: 187 QMAAPDAVSFNIMIFGYAKKGHNIEALKFLHEMVGLGLKPDEFTMLGLLICC 238
>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
Length = 676
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 103/183 (56%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ D + W+A+ Y G ++ AR FD+M +RD V WTAMID Y + R +E LF +
Sbjct: 235 DSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFAD 294
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ S I +EFT +L A AN + +LG+ + Y+ + FA +AL+ MY C +
Sbjct: 295 LLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGN 354
Query: 123 V--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+ E Q D FSWT++I G A +G D+A+ F ++++ +PD + +VGVLSA
Sbjct: 355 MVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSA 414
Query: 175 CTH 177
C H
Sbjct: 415 CAH 417
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 105/184 (57%), Gaps = 9/184 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D+ SW ++S Y G + A+ FD+MPERD WTAMI GY+R +R EAL LF
Sbjct: 131 MPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELF 190
Query: 61 QEMQTS-NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+ M+ S N ++FT+ S L A A + L +G+ I YI + + +D +AL DMY
Sbjct: 191 RMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGK 250
Query: 120 CADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C +E+A+ +D +WT MI G + D+F+ +LR+ I+P+E + GV
Sbjct: 251 CGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGV 310
Query: 172 LSAC 175
L+AC
Sbjct: 311 LNAC 314
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 25/166 (15%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+A+V Y G + A + F + P+ D WT++I GY + + EA+ F+ + S
Sbjct: 343 SALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQ 402
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
D T V +L+A A+ +D G +D + + D Y D+
Sbjct: 403 PDHITFVGVLSACAHAGLVDKG------LDYFHSIKEQYGLTHTADHYACIIDL------ 450
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
LA SG D+A ++ S+M S+KPD+ + +L C
Sbjct: 451 ----------LARSGQFDEAENIISKM---SMKPDKFLWASLLGGC 483
Score = 35.8 bits (81), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 12/114 (10%)
Query: 51 NRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAG 110
NR +EAL + ++ + I S + +R L G+ + +I + +F
Sbjct: 53 NRLKEALQILHQIDKPSASVYSTLIQSCIKSRL----LQQGKKVHQHIKLSGFVPGLFIL 108
Query: 111 NALIDMYCICADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
N L++MY C + E ++D SW +I G A G +A +F +M
Sbjct: 109 NRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKM 162
>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
Length = 569
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 103/182 (56%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
K V++WTA+++ Y+ G++ +A + F++MPE++ V W AMI GY+ +R + + LF+ M
Sbjct: 129 KSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTM 188
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
I + T+ S L + L AL LG + + K+ + +D AG +LI MYC C +
Sbjct: 189 VGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVL 248
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E ++D +W MI G A G G KAL +F +M+ +KPD + +V VL AC
Sbjct: 249 EDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMAC 308
Query: 176 TH 177
H
Sbjct: 309 NH 310
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 25/171 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + T+++S Y G ++ + F Q+P RD V W AMI GY + ++AL LF EM
Sbjct: 231 DTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMI 290
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ D T V++L A + DLG +K + +++ Y + A +
Sbjct: 291 EKGMKPDWITFVAVLMACNHAGFTDLG--VKYF-------------HSMAKDYGLVAKPD 335
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+T M+ L +G +A+D+ +M KP + +L AC
Sbjct: 336 -------HYTCMVDLLGRAGKLVEAVDLIEKM---PFKPHAAVFGTLLGAC 376
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 69/176 (39%), Gaps = 31/176 (17%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD SW +++ + Q+D AR F MP ++ V W AMI GY+ AL LF
Sbjct: 64 MPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNVVTWNAMISGYVECGDLDSALKLF 123
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++ +++ +++T L + L E + +K KN +
Sbjct: 124 EKAPFKSVVA----WTAMITGYMKLGRIGLAERL---FEKMPEKNLV------------- 163
Query: 121 ADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+W MI G + + + +F M+ I+P+ L C+
Sbjct: 164 -----------TWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCS 208
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 17/165 (10%)
Query: 1 MKNKDVISWTAIVSRYIN-RGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTL 59
M K ++W ++++ RG++ A++ F ++PE D V + M+ Y+R + A
Sbjct: 1 MTLKTTVTWNSVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAF 60
Query: 60 FQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
F++M + I + +A DL + T ++ NA+I Y
Sbjct: 61 FEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPT--------KNVVTWNAMISGYVE 112
Query: 120 CADVEKA----QKDKF----SWTTMIVGLAISGNGDKALDMFSQM 156
C D++ A +K F +WT MI G G A +F +M
Sbjct: 113 CGDLDSALKLFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKM 157
>gi|224129982|ref|XP_002320719.1| predicted protein [Populus trichocarpa]
gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 106/186 (56%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M N+D++SW ++ Y G+VDIAR FD+MPERD V + AM+ GY++ EAL +F
Sbjct: 284 MPNRDIVSWANMIDGYAKNGRVDIARSLFDEMPERDVVAYNAMMGGYVQNGYCMEALGIF 343
Query: 61 QEMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
MQ+ N + D T++ L+A A L +D G I +I++ D G ALIDMY
Sbjct: 344 YGMQSDGNFLLDNATLLIALSAIAQLGHIDKGVAIHRFIEEIGFSLDGRLGVALIDMYSK 403
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C +E A +K W +I GLAI G G+ A D +M R ++PD++ ++G+
Sbjct: 404 CGSIENAMMVFENIKEKSVDHWNAIIGGLAIHGLGELAFDFLMEMERMRVEPDDITFIGL 463
Query: 172 LSACTH 177
L+AC H
Sbjct: 464 LNACGH 469
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 17/182 (9%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ ++S Y+ G + A Q FD+MP+RD V + +MIDGY++ R A +F +
Sbjct: 161 DLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVSYNSMIDGYVKGGRIDLARVVFDCIP 220
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+E ++S + + G + + + D+ + N++ID C +E
Sbjct: 221 L-----EERNLISWNSLIRGYAQSEDGILVAWQLFAKMPERDLISWNSMIDGCVKCGRME 275
Query: 125 KAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
AQ +D SW MI G A +G D A +F +M + D VAY ++
Sbjct: 276 DAQGLFDRMPNRDIVSWANMIDGYAKNGRVDIARSLFDEM----PERDVVAYNAMMGGYV 331
Query: 177 HN 178
N
Sbjct: 332 QN 333
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 1 MKNKDVISWTAIVSRYI-NRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTL 59
++ +++ISW +++ Y + + +A Q F +MPERD + W +MIDG ++ R +A L
Sbjct: 221 LEERNLISWNSLIRGYAQSEDGILVAWQLFAKMPERDLISWNSMIDGCVKCGRMEDAQGL 280
Query: 60 FQEMQTSNIM 69
F M +I+
Sbjct: 281 FDRMPNRDIV 290
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 8/123 (6%)
Query: 39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYI 98
LW A+I Y + +EA+ L M + D+FT+ +L A + + + G I +
Sbjct: 94 LWNAIIKTYSHGHDPKEAMWLVSLMLENGAFADKFTLSLVLKACSRVGLVKEGMQIHGLL 153
Query: 99 DKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKAL 150
K + +D+F N LI Y C + +A ++D S+ +MI G G D A
Sbjct: 154 KKLEFGSDLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVSYNSMIDGYVKGGRIDLAR 213
Query: 151 DMF 153
+F
Sbjct: 214 VVF 216
>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 600
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 109/185 (58%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ +W ++ Y G V+ A F+QMP +D + WT MI Y + ++++AL ++
Sbjct: 230 MPERNTATWNTMIDGYTRLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIY 289
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM+ + I+ DE T+ ++ +A A++ AL+LG+ I Y+ + D++ G+AL+DMY C
Sbjct: 290 SEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKC 349
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ + K+ + W +I GLA+ G +KAL MF+ M R I P+ V ++ +L
Sbjct: 350 GSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISIL 409
Query: 173 SACTH 177
SACTH
Sbjct: 410 SACTH 414
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 9/137 (6%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-QTSNIMGDEFTIVSILTARANLRA 87
F QM + ++ AMI G++ AL + M + SN++ +T S++ A + A
Sbjct: 94 FTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACTFMCA 153
Query: 88 LDLGEWIKTYIDKNKVKNDIFAGNALIDMYC---ICADVEK-----AQKDKFSWTTMIVG 139
++LG+ + +I K ++ +F AL+D Y I ++ K ++D F+WT M+
Sbjct: 154 VELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTAMLSA 213
Query: 140 LAISGNGDKALDMFSQM 156
LA G+ D A +F +M
Sbjct: 214 LARVGDMDSARKLFEEM 230
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 12/166 (7%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFQ 61
N DV +A+V Y G +D++ F ++ +++ W A+I+G L V+ + E AL +F
Sbjct: 333 NLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEG-LAVHGYAEKALRMFA 391
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN-KVKNDIFAGNALIDMYCIC 120
M+ IM + T +SIL+A + +D G + ++ ++ DI ++DM
Sbjct: 392 IMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKS 451
Query: 121 ADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQML 157
+ +A + + W ++ G + GN + A D Q++
Sbjct: 452 GYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQLM 497
>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Glycine max]
Length = 778
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 99/176 (56%), Gaps = 8/176 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+ + Y ++D+ARQ FD+ E+ W AMI GY + A++LFQEM T+
Sbjct: 344 TALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFT 403
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
+ TI SIL+A A L AL G+ + I ++ +I+ ALIDMY C ++ +A
Sbjct: 404 PNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQL 463
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+K+ +W TMI G + G GD+AL +F++ML +P V ++ VL AC+H
Sbjct: 464 FDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSH 519
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 86/172 (50%), Gaps = 8/172 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+A+V Y +V AR+ FD+MP+RD VLW MI G +R + +++ +F++M +
Sbjct: 142 SALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVR 201
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
D T+ ++L A A ++ + +G I+ K D + LI ++ C DV+ A
Sbjct: 202 LDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLL 261
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+ D S+ +I G + +G + A+ F ++L + + VG++
Sbjct: 262 FGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIP 313
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
D+ + T + + + G AR F +P+ D L+ +I G+ + +++ + +
Sbjct: 38 HDLATVTKLTQKLFDVGATRHARALFFSVPKPDIFLFNVLIKGF-SFSPDASSISFYTHL 96
Query: 64 -QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ + + D FT ++A + +LG + + + +++F +AL+D+YC +
Sbjct: 97 LKNTTLSPDNFTYAFAISASPDD---NLGMCLHAHAVVDGFDSNLFVASALVDLYCKFSR 153
Query: 123 VEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
V A+K D W TMI GL + D ++ +F M+ ++ D VL A
Sbjct: 154 VAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPA 213
>gi|297738075|emb|CBI27276.3| unnamed protein product [Vitis vinifera]
Length = 248
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 104/178 (58%), Gaps = 8/178 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ +++ Y + G V AR FD+MP V WT MI GY + N F+E L +F+ MQ
Sbjct: 64 DIFVGNTLIAMYSSFGNVRAARCIFDEMPWHTAVSWTVMISGYAKNNCFKEGLQMFRLMQ 123
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
++ + DE +VSIL A A+L A+++G W+ Y+D+ + LIDMY C ++
Sbjct: 124 STGLEPDEAILVSILCACAHLGAMEIGVWVHRYLDQLGHPLSVRLSTGLIDMYAKCGSLD 183
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
A Q+D W MI G+A++G+GD AL +FS+M +A +KPD++ ++ + +A
Sbjct: 184 IAKKLFDGMSQRDTICWNAMISGMAMNGDGDNALRLFSEMEKAGVKPDDITFIAIFTA 241
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 8/143 (5%)
Query: 43 MIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK 102
MI ++ + + ++ +M + + D +T+ +L A A L++ LGE K
Sbjct: 1 MIKAFVLKGKLINTIQIYSQMLENGLYPDNYTLPYVLKACAGLQSCHLGESAHGQSVKLG 60
Query: 103 VKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFS 154
DIF GN LI MY +V A+ SWT MI G A + + L MF
Sbjct: 61 FWFDIFVGNTLIAMYSSFGNVRAARCIFDEMPWHTAVSWTVMISGYAKNNCFKEGLQMFR 120
Query: 155 QMLRASIKPDEVAYVGVLSACTH 177
M ++PDE V +L AC H
Sbjct: 121 LMQSTGLEPDEAILVSILCACAH 143
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T ++ Y G +DIA++ FD M +RD + W AMI G AL LF EM+ + +
Sbjct: 170 TGLIDMYAKCGSLDIAKKLFDGMSQRDTICWNAMISGMAMNGDGDNALRLFSEMEKAGVK 229
Query: 70 GDEFTIVSILTARA 83
D+ T ++I TA A
Sbjct: 230 PDDITFIAIFTASA 243
>gi|356567066|ref|XP_003551744.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 488
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 109/181 (60%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+SW+ ++ ++ G++++AR+ FD+MP+RD V WTAM+ GY + R REAL LF EM+
Sbjct: 176 DVVSWSGLLVAHVKAGELEVARRVFDEMPQRDVVSWTAMLTGYSQAKRPREALELFGEMR 235
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
S + DE T+VS+++A A+L ++ G + ++++N + NALIDMY C +E
Sbjct: 236 RSGVWPDEVTMVSLVSACASLGDMETGMMVHRFVEENGFGWMVALCNALIDMYGKCGCLE 295
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+A +K +W TM+ A GN D+A +F M+ + + PD V + +L A
Sbjct: 296 EAWRVFHGMTRKSLITWNTMVTVCANYGNADEAFRLFEWMVCSGVVPDSVTLLALLVAYA 355
Query: 177 H 177
H
Sbjct: 356 H 356
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G ++ A + F M + + W M+ EA LF+ M S ++
Sbjct: 283 ALIDMYGKCGCLEEAWRVFHGMTRKSLITWNTMVTVCANYGNADEAFRLFEWMVCSGVVP 342
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKN-KVKNDIFAGNALIDMYCICADVEKA 126
D T++++L A A+ +D G + +D++ V+ I A+IDM +++A
Sbjct: 343 DSVTLLALLVAYAHKGLVDEGIRLFESMDRDYGVEPRIEHYGAVIDMLGRAGRLQEA 399
>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
Length = 616
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 107/186 (57%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVL-WTAMIDGYLRVNRFREALTL 59
++ D +SW +++ Y+ G++D+A F +MPE++ + WT MI GY++ +EAL L
Sbjct: 171 IQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQL 230
Query: 60 FQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
F EMQ SN+ D ++ S L+A + L AL+ G+WI +Y +K + + D LIDMY
Sbjct: 231 FHEMQNSNVPPDNVSLASALSACSQLGALEQGKWIHSYANKTRTRIDSVLCCVLIDMYAK 290
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C ++E+A K WT +I G A G G +A+ F +M +KP+ + + V
Sbjct: 291 CGEMEEALGVFKNMKTKSVQVWTALISGYAYHGLGREAISKFLEMQNMGVKPNAITFTAV 350
Query: 172 LSACTH 177
L+AC++
Sbjct: 351 LTACSY 356
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 74/188 (39%), Gaps = 40/188 (21%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88
F+ D LW MI G ++ +L L+ M + + +T +L A +NL A
Sbjct: 67 FNGFDRPDTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAF 126
Query: 89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------------------- 127
I +I K +DI+A N+LI+ Y + + + A
Sbjct: 127 QETTQIHAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGY 186
Query: 128 -------------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
+ SWTTMI G +G +AL +F +M +++ PD V+
Sbjct: 187 VKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSL 246
Query: 169 VGVLSACT 176
LSAC+
Sbjct: 247 ASALSACS 254
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + ++ Y G+++ A F M + +WTA+I GY REA++ F EMQ
Sbjct: 277 DSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHGLGREAISKFLEMQ 336
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN-KVKNDIFAGNALIDM 116
+ + T ++LTA + ++ G+ + I+++ +K I ++D+
Sbjct: 337 NMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTIEHYGCMVDL 389
>gi|242059659|ref|XP_002458975.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
gi|241930950|gb|EES04095.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
Length = 590
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 64/185 (34%), Positives = 105/185 (56%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D++ W +++ Y G++D AR F++MPER+ + W+ +IDG++R +EAL F
Sbjct: 240 MTERDLVCWNSMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVRCGEAKEALEHF 299
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
Q M I D V ++A A L AL+ G W+ +Y++K KV +D+ ALIDMY C
Sbjct: 300 QSMLRCGIRPDRVAAVGAVSACAQLGALEQGRWLHSYLEKKKVLSDVVVQTALIDMYMKC 359
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ A ++ +W MIVGL G G A+ +F +M + D+++ + +L
Sbjct: 360 GRMDLAMLIFESMPERSVVTWNVMIVGLGTHGYGLDAVMLFHRMEAERVAVDDLSLLAML 419
Query: 173 SACTH 177
+ACTH
Sbjct: 420 TACTH 424
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 14/150 (9%)
Query: 20 GQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIV 76
G +A F ++PE RD W I + R R AL F M++ + D +T
Sbjct: 59 GAAPLADAVFARLPEPAARDPFPWNTAIRLHAP-GRPRAALLYFARMRSCGVRPDAYTFP 117
Query: 77 SILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK-------- 128
++L A G + + + D+F NALI YC D +K
Sbjct: 118 AVLKACGCAPGCRAGLLVHAEAVRRGLGADLFTVNALISFYCRILDCISGRKVFDEAGGV 177
Query: 129 --DKFSWTTMIVGLAISGNGDKALDMFSQM 156
D SW +M+ G G A ++F +M
Sbjct: 178 SRDLVSWNSMVAGYVGCGEMGLAQELFDEM 207
>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Glycine max]
Length = 529
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 107/185 (57%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V +W A++ Y G + A F+QMP RD + WT M++ Y R R++E + LF
Sbjct: 168 MPEKNVATWNAMIDGYGKLGNAESAEFLFNQMPARDIISWTTMMNCYSRNKRYKEVIALF 227
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++ ++ DE T+ ++++A A+L AL LG+ + Y+ D++ G++LIDMY C
Sbjct: 228 HDVIDKGMIPDEVTMTTVISACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKC 287
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ A K+ F W +I GLA G ++AL MF +M R I+P+ V ++ +L
Sbjct: 288 GSIDMALLVFYKLQTKNLFCWNCIIDGLATHGYVEEALRMFGEMERKRIRPNAVTFISIL 347
Query: 173 SACTH 177
+ACTH
Sbjct: 348 TACTH 352
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 70/183 (38%), Gaps = 47/183 (25%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ V T ++ Y G V +R+ FD MPERD WT MI ++R A LF E
Sbjct: 108 DSHVFVQTTLIEFYSTFGDVGGSRRVFDDMPERDVFAWTTMISAHVRDGDMASAGRLFDE 167
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M N+ W NA+ID Y +
Sbjct: 168 MPEKNV----------------------ATW-----------------NAMIDGYGKLGN 188
Query: 123 VEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
E A+ +D SWTTM+ + + + + +F ++ + PDEV V+SA
Sbjct: 189 AESAEFLFNQMPARDIISWTTMMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTMTTVISA 248
Query: 175 CTH 177
C H
Sbjct: 249 CAH 251
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 70/158 (44%), Gaps = 8/158 (5%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
+S N +++A F + + +++ A+I G + +AL + M +N+M
Sbjct: 16 FISACSNLSCINLAASAFANVQNPNVLVFNALIRGCVHCCYSEQALVHYMHMLRNNVMPT 75
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV-------- 123
++ S++ A L GE + ++ K+ + +F LI+ Y DV
Sbjct: 76 SYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLIEFYSTFGDVGGSRRVFD 135
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI 161
+ ++D F+WTTMI G+ A +F +M ++
Sbjct: 136 DMPERDVFAWTTMISAHVRDGDMASAGRLFDEMPEKNV 173
>gi|357444867|ref|XP_003592711.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481759|gb|AES62962.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 110/188 (58%), Gaps = 10/188 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ K+++SW +++ Y G++ +A++ F+ M ERD W++ IDGY++ +REA+ +F
Sbjct: 175 MQGKNLVSWNSMLDGYAKCGEMAMAQKVFESMQERDVRSWSSFIDGYVKAGEYREAMAVF 234
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++M+ +E T+VS+L+A A+L AL G + YI N + + +L+DMY C
Sbjct: 235 EKMRAVGPKANEVTMVSVLSACAHLGALQKGRMMHQYIIDNLLPMTMVLQTSLVDMYAKC 294
Query: 121 ADVE----------KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
+E K+Q D F W MI GLA G +++L +F +M A I+ DE+ Y+
Sbjct: 295 GAIEEALFVFRGISKSQTDVFIWNAMIGGLATHGLVEESLKLFKEMQMAGIRSDEITYLC 354
Query: 171 VLSACTHN 178
+L+AC H
Sbjct: 355 LLAACAHG 362
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 82/211 (38%), Gaps = 43/211 (20%)
Query: 6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT 65
++S++A+ N G +D + + F Q+ W +I GY +L++F +M
Sbjct: 52 ILSFSALS----NSGDIDYSYRVFSQISSPTIFSWNIIIRGYSNSKNPIHSLSIFLKMLR 107
Query: 66 SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK 125
+ D T ++ A A L G + I K ++D F N+LI MY C ++
Sbjct: 108 HGVAPDYLTYPFLVKASARLSKQKSGVSVHAQIIKTGHESDRFIQNSLIHMYASCGNIMW 167
Query: 126 AQK---------------------------------------DKFSWTTMIVGLAISGNG 146
A K D SW++ I G +G
Sbjct: 168 AHKVFESMQGKNLVSWNSMLDGYAKCGEMAMAQKVFESMQERDVRSWSSFIDGYVKAGEY 227
Query: 147 DKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+A+ +F +M K +EV V VLSAC H
Sbjct: 228 REAMAVFEKMRAVGPKANEVTMVSVLSACAH 258
>gi|125590818|gb|EAZ31168.1| hypothetical protein OsJ_15267 [Oryza sativa Japonica Group]
Length = 586
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 66/185 (35%), Positives = 108/185 (58%), Gaps = 8/185 (4%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
K ++I A++ Y+ ++D+AR+ FD + RD V WT MI G ++ R EAL +F
Sbjct: 247 KELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEALEVFN 306
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY--CI 119
MQ S + D+ + ++L+A A+L AL+ G W+ YI++ ++ D+ G +++DMY C
Sbjct: 307 AMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKGIEWDVHVGTSVVDMYVKCG 366
Query: 120 CADV------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
C D E K+ SW +I G A+ G G +ALD F +M+ + + P+EV ++ VL
Sbjct: 367 CLDTAVSIFQEMPLKNVSSWNALINGFALHGRGREALDCFDRMVASGLHPNEVTFITVLG 426
Query: 174 ACTHN 178
AC H+
Sbjct: 427 ACCHS 431
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 62/173 (35%), Positives = 95/173 (54%), Gaps = 11/173 (6%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+V+ Y GQ AR+ FD+M ERD V WTA++ + R F EAL + EM ++
Sbjct: 158 ALVTFYGACGQCGDARKVFDEMAERDVVSWTALLSAFTRGGMFMEALGVLAEM---DVTP 214
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--- 127
+E T+ S+L A NL G+ + + + + + ++ GNAL+DMY C ++ A+
Sbjct: 215 NEVTLASVLVACGNLGTARAGKAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLARRVF 274
Query: 128 -----KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+D SWT MI GL +AL++F+ M + +KPD+V VLSAC
Sbjct: 275 DMLLARDIVSWTVMISGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSAC 327
>gi|115459098|ref|NP_001053149.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|38344239|emb|CAD41332.2| OJ991113_30.16 [Oryza sativa Japonica Group]
gi|113564720|dbj|BAF15063.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|125548801|gb|EAY94623.1| hypothetical protein OsI_16400 [Oryza sativa Indica Group]
Length = 598
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 66/185 (35%), Positives = 108/185 (58%), Gaps = 8/185 (4%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
K ++I A++ Y+ ++D+AR+ FD + RD V WT MI G ++ R EAL +F
Sbjct: 247 KELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEALEVFN 306
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY--CI 119
MQ S + D+ + ++L+A A+L AL+ G W+ YI++ ++ D+ G +++DMY C
Sbjct: 307 AMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKGIEWDVHVGTSVVDMYVKCG 366
Query: 120 CADV------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
C D E K+ SW +I G A+ G G +ALD F +M+ + + P+EV ++ VL
Sbjct: 367 CLDTAVSIFQEMPLKNVSSWNALINGFALHGRGREALDCFDRMVASGLHPNEVTFITVLG 426
Query: 174 ACTHN 178
AC H+
Sbjct: 427 ACCHS 431
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 62/173 (35%), Positives = 95/173 (54%), Gaps = 11/173 (6%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+V+ Y GQ AR+ FD+M ERD V WTA++ + R F EAL + EM ++
Sbjct: 158 ALVTFYGACGQCGDARKVFDEMAERDVVSWTALLSAFTRGGMFMEALGVLAEM---DVTP 214
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--- 127
+E T+ S+L A NL G+ + + + + + ++ GNAL+DMY C ++ A+
Sbjct: 215 NEVTLASVLVACGNLGTARAGKAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLARRVF 274
Query: 128 -----KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+D SWT MI GL +AL++F+ M + +KPD+V VLSAC
Sbjct: 275 DMLLARDIVSWTVMISGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSAC 327
>gi|242049708|ref|XP_002462598.1| hypothetical protein SORBIDRAFT_02g028755 [Sorghum bicolor]
gi|241925975|gb|EER99119.1| hypothetical protein SORBIDRAFT_02g028755 [Sorghum bicolor]
Length = 655
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 105/183 (57%), Gaps = 14/183 (7%)
Query: 8 SWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN 67
SW A+++ + +G + AR+ FD MPERD V W+ MI GY++ R AL LF M ++
Sbjct: 345 SWNALLAALLRKGLIHEARELFDDMPERDTVSWSTMISGYVQTGRSDMALELFYSMLNTS 404
Query: 68 IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVK--NDIFAGNALIDMYCICADVEK 125
+ +E T+ S L+A A+ LD G+WI +I ++ +++ AG LIDMY V
Sbjct: 405 VEPNEVTLASALSAIADSGTLDQGKWIHDHIMNRPIQLTDNLSAG--LIDMYAKRGSVAD 462
Query: 126 A------QKDKFS----WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
A DKFS W MI LAI G +LD+FSQ+ R SIKP+ + ++GVLSAC
Sbjct: 463 AVQFFNCASDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQLQRTSIKPNSITFIGVLSAC 522
Query: 176 THN 178
H
Sbjct: 523 CHT 525
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 94/214 (43%), Gaps = 40/214 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ ++W A+++ Y+ +D+A + F ++PERD V W +IDGY+ + +A+ +
Sbjct: 205 MTHRNAVTWNAMLNGYVKAEMIDMAAEVFWRIPERDEVSWLTLIDGYICADLISDAMKAY 264
Query: 61 QEMQTSNIMGD-EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+M D E +V ++ A A A+ G+ + T I KN F L+ Y
Sbjct: 265 VQMVGEVGANDHEVLLVDLMKACARYSAITEGQQLHTVILKNGFDAHAFVQATLVHFYGC 324
Query: 120 CADVEKAQ---------------------------------------KDKFSWTTMIVGL 140
C + AQ +D SW+TMI G
Sbjct: 325 CGLIGLAQMAFKLSDKSHTASWNALLAALLRKGLIHEARELFDDMPERDTVSWSTMISGY 384
Query: 141 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+G D AL++F ML S++P+EV LSA
Sbjct: 385 VQTGRSDMALELFYSMLNTSVEPNEVTLASALSA 418
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 12/154 (7%)
Query: 32 MPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG-DEFTIVSILTARANLRALDL 90
MP L ++ R R R L S ++ + F S+L+ + L + L
Sbjct: 1 MPGGGNPLAPFLVASLKRAARLRCGEQLHALAAKSGLLACNAFVRNSVLSFYSRLPS-SL 59
Query: 91 GEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK----------DKFSWTTMIVGL 140
++ + + D A N+++ +++AQ+ D S+TT++ L
Sbjct: 60 ASALQLFDETPAPLRDTAARNSVLAALTRAGHLDRAQRLLDEMPRVHRDAVSYTTLVTAL 119
Query: 141 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
A +G+ +A+ +F ML ++ P+EV G + A
Sbjct: 120 ARAGHAGRAVAVFRGMLSENVVPNEVTLAGAIMA 153
>gi|255582620|ref|XP_002532091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528238|gb|EEF30293.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 446
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 107/175 (61%), Gaps = 9/175 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+A++ Y G + AR+ FD M E+D V W AMI GY + EA+TLF M+ + I
Sbjct: 267 SALIDMYGKCGDLMSARRVFDNMAEKDIVTWNAMITGYAQNGASDEAMTLFNVMREAGIT 326
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
+E T+V +L+A A++ ALDLG+W++ Y + +++D++ +AL+DMY C ++ A
Sbjct: 327 PNEITMVVVLSACASIGALDLGKWVEMYASQRGLQHDVYVASALVDMYAKCGSLDNALRV 386
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSAC 175
K++ SW MI LA G +AL +FS+ML S ++P+++ ++GV +AC
Sbjct: 387 FENMPHKNEVSWNAMISALAFHGRAREALSLFSRMLNGSTVRPNDITFIGVFAAC 441
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 101/173 (58%), Gaps = 8/173 (4%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
++++ Y ++D AR+ FD++ ERD V W +MI GY ++ REA+ LF EM+
Sbjct: 167 SLITMYAKCSKLDSARKVFDEILERDIVSWNSMISGYTKMGFAREAVRLFMEMREQGFEP 226
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV------- 123
E T+VSIL A +L L LG+W++ I K++ + + +ALIDMY C D+
Sbjct: 227 VEMTLVSILGACGDLGDLALGKWVEALIGDKKMELNSYTASALIDMYGKCGDLMSARRVF 286
Query: 124 -EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
A+KD +W MI G A +G D+A+ +F+ M A I P+E+ V VLSAC
Sbjct: 287 DNMAEKDIVTWNAMITGYAQNGASDEAMTLFNVMREAGITPNEITMVVVLSAC 339
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 80/173 (46%), Gaps = 9/173 (5%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNR-FREALTLFQEMQTSNIMG 70
++ R I+ A F QMP + + MI G R + A+ L+ +M++ +
Sbjct: 66 LLPRIIDLKDFAYASLLFTQMPNPNDYAFNVMIRGLTTTWRNYSLAIQLYYQMKSLGLKP 125
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK-- 128
+ FT + + ANL AL G+ + + K ND ++LI MY C+ ++ A+K
Sbjct: 126 NNFTFPFLFISCANLVALHCGQIAHSLVLKMGFNNDSHINHSLITMYAKCSKLDSARKVF 185
Query: 129 ------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
D SW +MI G G +A+ +F +M +P E+ V +L AC
Sbjct: 186 DEILERDIVSWNSMISGYTKMGFAREAVRLFMEMREQGFEPVEMTLVSILGAC 238
>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 802
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 103/181 (56%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + WTA++ Y G ++ AR FDQM ++D V WT MI R +E +LF+++
Sbjct: 230 DEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLM 289
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
S + +E+T +L A A+L A +G+ + Y+ + FA +AL+ +Y C + E
Sbjct: 290 GSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTE 349
Query: 125 KAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A++ D SWT++IVG A +G D AL F +LR+ KPDE+ +VGVLSACT
Sbjct: 350 TARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACT 409
Query: 177 H 177
H
Sbjct: 410 H 410
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 103/186 (55%), Gaps = 13/186 (6%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ KD+ SW ++S Y N G+++ AR+ FD+MP RD W A+I GY+ + EAL LF
Sbjct: 124 IPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLF 183
Query: 61 ---QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
QE ++SN + FT+ S L A A + +L G+ I Y+ ++ ++ D AL+D+Y
Sbjct: 184 RMMQENESSNC--NMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLY 241
Query: 118 CICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
C + +A+ KD SWTTMI G + +F ++ + ++P+E +
Sbjct: 242 GKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFA 301
Query: 170 GVLSAC 175
GVL+AC
Sbjct: 302 GVLNAC 307
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 10/146 (6%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+A+V Y G + AR+ F+QMP D V WT++I GY + + AL F+ + S
Sbjct: 336 SALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTK 395
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ- 127
DE T V +L+A + +D+G E+ + +K+ + + +ID+ ++A+
Sbjct: 396 PDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAEN 455
Query: 128 --------KDKFSWTTMIVGLAISGN 145
DKF W +++ G I GN
Sbjct: 456 IIDNMPMKPDKFLWASLLGGCRIHGN 481
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIK 95
++ + +I+ + + NR +EA+ + + +++ A R L+LG+ +
Sbjct: 31 EHRRFEEIIELFCQQNRLKEAVDYLHRIPQPSPR----LYSTLIAACLRHRKLELGKRVH 86
Query: 96 TYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKFSWTTMIVGLAISGNGD 147
+ + I N LI MY C + E QKD SW TMI G A G +
Sbjct: 87 AHTKASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIE 146
Query: 148 KALDMFSQM 156
+A +F +M
Sbjct: 147 QARKLFDEM 155
>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 602
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 109/184 (59%), Gaps = 9/184 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+DV++WT +VS Y G V+ AR+ FD MPE++ V WT++I GY R + +AL LF +M
Sbjct: 247 RDVLAWTTMVSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKM 306
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
NI D+FT S L A A++ +L+ G+ I Y+ + ++ + ++LIDMY C +
Sbjct: 307 MALNIRPDQFTFSSCLCASASIASLNHGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCGCL 366
Query: 124 EKAQ------KDKFS---WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
E + DK+ W T+I LA G G +A+ MF M+R +KPD + + +L+A
Sbjct: 367 EVGRLVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMKPDRITLIVLLNA 426
Query: 175 CTHN 178
C+H+
Sbjct: 427 CSHS 430
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 98/213 (46%), Gaps = 39/213 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ SW ++S Y G++ AR+ FD+MPE+D V W M+ Y + +AL +
Sbjct: 112 MSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAYAKSGFCNDALRFY 171
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+E++ I +E++ +L ++ L+L + + +++ ++++D Y C
Sbjct: 172 RELRRLGIGYNEYSFAGLLNICVKVKELELSKQAHGQVLVAGFLSNLVISSSVLDAYAKC 231
Query: 121 A-------------------------------DVEKA--------QKDKFSWTTMIVGLA 141
+ DVE A +K+ +WT++I G A
Sbjct: 232 SEMGDARRLFDEMIIRDVLAWTTMVSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYA 291
Query: 142 ISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
G KAL++F++M+ +I+PD+ + L A
Sbjct: 292 RHDLGHKALELFTKMMALNIRPDQFTFSSCLCA 324
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 40/142 (28%)
Query: 74 TIVSILTARANLRALDLGEWIKTYIDKNKVKN-DIFAGNALIDMYCICADVEKA------ 126
T+ +L AN ++L LG+W+ ++ +K + F N LI+MY C D A
Sbjct: 52 TLAYLLQQCANTKSLKLGKWVHLHLKVTGLKRPNTFLANHLINMYSKCGDYPSAYKVFDE 111
Query: 127 ---------------------------------QKDKFSWTTMIVGLAISGNGDKALDMF 153
+KD SW TM++ A SG + AL +
Sbjct: 112 MSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAYAKSGFCNDALRFY 171
Query: 154 SQMLRASIKPDEVAYVGVLSAC 175
++ R I +E ++ G+L+ C
Sbjct: 172 RELRRLGIGYNEYSFAGLLNIC 193
>gi|413937223|gb|AFW71774.1| hypothetical protein ZEAMMB73_242527 [Zea mays]
Length = 625
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 68/184 (36%), Positives = 103/184 (55%), Gaps = 11/184 (5%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D SW +VS Y G ++ AR+ F +MPER V W+AMID +R F EAL +F +M
Sbjct: 183 DAFSWNTMVSGYGKCGDLEAAREVFVRMPERGLVSWSAMIDACIRAGEFSEALRMFDQMM 242
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN---KVKNDIFAGNALIDMYCICA 121
+ D + S+L A A+L AL+ G W+ ++ + +++ AL+DMYC C
Sbjct: 243 GNGFRPDAVVLSSVLKACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETALVDMYCKCG 302
Query: 122 DVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+++A +D W MI GLA++G+G +AL++F +ML P+E +V VL
Sbjct: 303 CMDEAWWVFDGVQSQDVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTFVVVLC 362
Query: 174 ACTH 177
ACTH
Sbjct: 363 ACTH 366
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 45/90 (50%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+V+ TA+V Y G +D A FD + +D VLW AMI G + AL LF+ M
Sbjct: 287 NVMLETALVDMYCKCGCMDEAWWVFDGVQSQDVVLWNAMIGGLAMNGHGKRALELFRRML 346
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWI 94
+ +E T V +L A + +D G+ I
Sbjct: 347 DMGFVPNESTFVVVLCACTHTGRVDEGKEI 376
>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Vitis vinifera]
Length = 610
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 113/186 (60%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ +K+ ISWTA++S Y G+ A Q F +MP ++ + WTA+I G ++ + ++ LF
Sbjct: 166 ISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLF 225
Query: 61 QEMQTSNI-MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
EM++ I + D F + SI+ A ANL L LG+ I + ++ +F NAL+DMY
Sbjct: 226 MEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAK 285
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C+DV A Q+D SWT++IVG A G ++AL ++++ML +KP+EV +VG+
Sbjct: 286 CSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGL 345
Query: 172 LSACTH 177
+ AC+H
Sbjct: 346 IYACSH 351
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 73/154 (47%), Gaps = 9/154 (5%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-QTSNIMG 70
+++ Y G + A F+Q+P RD + W +++ + N L++F M + +
Sbjct: 44 LINMYGKCGLIQDALNLFNQLPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQP 103
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA--DVEK--- 125
D + ++ A A L A+ G+ + + V +D ++L+DMY C D+ +
Sbjct: 104 DHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVF 163
Query: 126 ---AQKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
+ K+ SWT MI G A SG A+ +F +M
Sbjct: 164 DSISSKNSISWTAMISGYAQSGRKLDAIQLFQKM 197
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 25/168 (14%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+V Y V A++ F +M +RD V WT++I G + EAL+L+ M ++ +
Sbjct: 278 ALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKP 337
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDK 130
+E T V ++ A +++ + G + N++I Y I ++
Sbjct: 338 NEVTFVGLIYACSHVGLVSKGRYF---------------FNSMIKDYGINPSLQH----- 377
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+T ++ L+ SG+ ++A ++ M KPDE + +LSAC H+
Sbjct: 378 --YTCLLDLLSRSGHLEEAENLIKAM---PFKPDEATWAALLSACNHH 420
>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
Length = 546
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 113/187 (60%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD++SW +++ Y+ G+++ AR FD+ PE+D V W MI GY+ R+AL +F
Sbjct: 205 MPVKDLVSWNVMITGYVKNGEMENARTLFDEAPEKDVVTWNTMIAGYVLRGEQRQALEMF 264
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK-NKVKNDIFAGNALIDMYCI 119
+EM+ DE T++S+L+A A+L L +G + I + + + GNAL+DMY
Sbjct: 265 EEMRNVGECPDEVTMLSLLSACADLGDLQVGRKLHCSISEMTRGDLSVLLGNALVDMYAK 324
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVG 170
C +E A +KD +W ++I GLA G+ ++++ +F++M +IKP+E+ +VG
Sbjct: 325 CGSIEIALQVFKKMREKDVTTWNSVIGGLAFHGHAEESIKLFAEMQALKNIKPNEITFVG 384
Query: 171 VLSACTH 177
V+ AC+H
Sbjct: 385 VIVACSH 391
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 67/163 (41%), Gaps = 37/163 (22%)
Query: 16 YINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTI 75
+ N G + IAR F +PER V W+A+ GY R A +F EM
Sbjct: 158 HSNCGDLVIARSIFYDLPERSVVSWSALTAGYARRGELGVARQIFDEMPVK--------- 208
Query: 76 VSILTARANLRALDLGEW---IKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFS 132
DL W I Y+ +++N L D E +KD +
Sbjct: 209 -------------DLVSWNVMITGYVKNGEMEN----ARTLFD--------EAPEKDVVT 243
Query: 133 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
W TMI G + G +AL+MF +M PDEV + +LSAC
Sbjct: 244 WNTMIAGYVLRGEQRQALEMFEEMRNVGECPDEVTMLSLLSAC 286
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 8/145 (5%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G ++ A Q F Q+ E D +W M+ G + + + L+ +M+ + D+FT +L
Sbjct: 61 GAINYAHQVFAQITEPDIFMWNTMMRGSSQSKNPSKVVLLYTQMENRGVKPDKFTFSFLL 120
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKF 131
L G + + K + + F N LI + C D+ + ++
Sbjct: 121 KGCTRLEWRKTGFCVHGKVLKYGFEVNSFVRNTLIYFHSNCGDLVIARSIFYDLPERSVV 180
Query: 132 SWTTMIVGLAISGNGDKALDMFSQM 156
SW+ + G A G A +F +M
Sbjct: 181 SWSALTAGYARRGELGVARQIFDEM 205
Score = 40.4 bits (93), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 99 DKNKVKNDIFAGNALIDM---YCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQ 155
++ ++ IFAG I Y + + D F W TM+ G + S N K + +++Q
Sbjct: 44 NRAALRELIFAGAMTISGAINYAHQVFAQITEPDIFMWNTMMRGSSQSKNPSKVVLLYTQ 103
Query: 156 MLRASIKPDEVAYVGVLSACT 176
M +KPD+ + +L CT
Sbjct: 104 MENRGVKPDKFTFSFLLKGCT 124
>gi|255567935|ref|XP_002524945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535780|gb|EEF37442.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 417
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 104/185 (56%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ K ++S TA+++ + G V AR FD + +RD V W MIDGY++ E L LF
Sbjct: 189 IPEKSLVSSTAMITCFAKHGMVKEARVLFDGLEDRDLVCWNVMIDGYVQHGLANEGLVLF 248
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++M + E T++++L+A + AL+ G W+ +YI N ++ + G+ALIDMY C
Sbjct: 249 RQMLKDRVRPSEVTVLAVLSACGQIGALESGRWVHSYIQNNGIEINAHVGSALIDMYSKC 308
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++E A+ KD W +M+ G A G AL +F++M +P ++ ++GVL
Sbjct: 309 GNLEDARLVFERIKYKDVVVWNSMVTGYATHGFSQDALQLFNEMCGLGYQPTDITFIGVL 368
Query: 173 SACTH 177
SAC H
Sbjct: 369 SACGH 373
>gi|242032157|ref|XP_002463473.1| hypothetical protein SORBIDRAFT_01g000443 [Sorghum bicolor]
gi|241917327|gb|EER90471.1| hypothetical protein SORBIDRAFT_01g000443 [Sorghum bicolor]
Length = 438
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 111/187 (59%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++V+SW A++ Y + G + AR FD MP+R+ W++M+ G + R EAL +F
Sbjct: 161 MPDRNVVSWNAMLGAYASAGMLSQARDLFDAMPQRNAATWSSMLTGLVLSGRCGEALRVF 220
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN-KVKNDIFAGNALIDMYCI 119
+M S + +E +VS+++A A LR+L+ G W+ Y ++ + + +A+IDMY
Sbjct: 221 HDMVRSGAVPNEPALVSVVSACAQLRSLEYGAWVHGYAEQELQGAMSVILASAIIDMYGK 280
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C + A ++ +SW MI GLA++G +AL + +M A ++P+++ ++G+
Sbjct: 281 CGGIHSAVRVFAAMPVRNVYSWNAMIAGLAMNGGERQALSLLWKMQMAGVRPNDITFIGL 340
Query: 172 LSACTHN 178
LSAC+H+
Sbjct: 341 LSACSHS 347
>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 748
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 103/185 (55%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+ +SW ++S Y GQ+D A + F M E++ V W ++I G+L+ N + +AL
Sbjct: 385 MPIKNSVSWNTMISGYAQAGQMDRATEIFQAMREKNIVSWNSLIAGFLQNNLYLDALKSL 444
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M D+ T L+A ANL AL +G + YI K+ ND+F GNALI MY C
Sbjct: 445 VMMGKEGKKPDQSTFACTLSACANLAALQVGNQLHEYILKSGYMNDLFVGNALIAMYAKC 504
Query: 121 ADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
V+ A++ D SW ++I G A++G +KA F QM + PDEV ++G+L
Sbjct: 505 GRVQSAEQVFRDIECVDLISWNSLISGYALNGYANKAFKAFEQMSSERVVPDEVTFIGML 564
Query: 173 SACTH 177
SAC+H
Sbjct: 565 SACSH 569
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 98/216 (45%), Gaps = 47/216 (21%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +K+V+SW A+++ Y+ QVD A + F +MP +D V WT +I+GY+RV + EA ++
Sbjct: 261 MPSKNVVSWNAMIATYVQDLQVDEAVKLFKKMPHKDSVSWTTIINGYIRVGKLDEARQVY 320
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M +I + ++ N R +D + + + I +D+ N++I Y
Sbjct: 321 NQMPCKDITAQTALMSGLIQ---NGR-IDEADQMFSRIG----AHDVVCWNSMIAGYSRS 372
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI----------- 161
+++A K+ SW TMI G A +G D+A ++F M +I
Sbjct: 373 GRMDEALNLFRQMPIKNSVSWNTMISGYAQAGQMDRATEIFQAMREKNIVSWNSLIAGFL 432
Query: 162 --------------------KPDEVAYVGVLSACTH 177
KPD+ + LSAC +
Sbjct: 433 QNNLYLDALKSLVMMGKEGKKPDQSTFACTLSACAN 468
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 16/164 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD++S+ ++++ Y G++ +A Q F+ M ER+ V W M+ GY++ A LF
Sbjct: 168 MPAKDLVSYNSMLAGYTQNGKMHLALQFFESMTERNVVSWNLMVAGYVKSGDLSSAWQLF 227
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+++ N VS +T L + D+ KN + + NA+I Y
Sbjct: 228 EKIPNPN-------AVSWVTMLCGLAKYGKMAEARELFDRMPSKN-VVSWNAMIATYVQD 279
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
V++A KD SWTT+I G G D+A +++QM
Sbjct: 280 LQVDEAVKLFKKMPHKDSVSWTTIINGYIRVGKLDEARQVYNQM 323
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 78/187 (41%), Gaps = 31/187 (16%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW +V+ Y+ G + A Q F+++P + V W M+ G + + EA LF
Sbjct: 199 MTERNVVSWNLMVAGYVKSGDLSSAWQLFEKIPNPNAVSWVTMLCGLAKYGKMAEARELF 258
Query: 61 QEMQTSNIMG---------DEFTIVSILTARANLRALDLGEW---IKTYIDKNKVKN--- 105
M + N++ + + + + D W I YI K+
Sbjct: 259 DRMPSKNVVSWNAMIATYVQDLQVDEAVKLFKKMPHKDSVSWTTIINGYIRVGKLDEARQ 318
Query: 106 --------DIFAGNALIDMYCICADVEKAQK--------DKFSWTTMIVGLAISGNGDKA 149
DI A AL+ +++A + D W +MI G + SG D+A
Sbjct: 319 VYNQMPCKDITAQTALMSGLIQNGRIDEADQMFSRIGAHDVVCWNSMIAGYSRSGRMDEA 378
Query: 150 LDMFSQM 156
L++F QM
Sbjct: 379 LNLFRQM 385
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 11/167 (6%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +K+++++ +++S ++ ARQ FDQM R+ V W MI GYL N EA LF
Sbjct: 43 MTHKNLVTYNSMISVLAKNARIRDARQLFDQMSLRNLVSWNTMIAGYLHNNMVEEASELF 102
Query: 61 QEMQTSNIMGDEFT---IVSILTARANL-RALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116
M D F+ +++ T + L +A +L E + +D N + AG A
Sbjct: 103 DVMPER----DNFSWALMITCYTRKGKLEKARELLELVPDKLD-TACWNAMIAGYAKKGQ 157
Query: 117 YCICADV--EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI 161
+ V + KD S+ +M+ G +G AL F M ++
Sbjct: 158 FNDAKKVFEQMPAKDLVSYNSMLAGYTQNGKMHLALQFFESMTERNV 204
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 69/168 (41%), Gaps = 21/168 (12%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G+V+ A + F M ++ V + +MI + R R+A LF +M N++ I L
Sbjct: 31 GKVEEAIRIFFNMTHKNLVTYNSMISVLAKNARIRDARQLFDQMSLRNLVSWNTMIAGYL 90
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK---------DK 130
A +L + + + D F+ +I Y +EKA++ D
Sbjct: 91 HNNMVEEASELFDVMP--------ERDNFSWALMITCYTRKGKLEKARELLELVPDKLDT 142
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
W MI G A G + A +F QM D V+Y +L+ T N
Sbjct: 143 ACWNAMIAGYAKKGQFNDAKKVFEQM----PAKDLVSYNSMLAGYTQN 186
>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 679
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 112/216 (51%), Gaps = 39/216 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D SWT +V G+V+ AR+ FDQMP R+ V W AMI+GY++ F AL LF
Sbjct: 204 MPERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELF 263
Query: 61 QEMQ-----TSNIM--GDEF------------------------TIVSILTARANLRALD 89
+M T N+M G E T+VS+L+A + L L
Sbjct: 264 YQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLG 323
Query: 90 LGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA-------QKDKFS-WTTMIVGLA 141
G WI +Y++KN + D G +LI+MY C +E A QK K WT +IVGL
Sbjct: 324 KGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLG 383
Query: 142 ISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
I G + AL +F +M + +KP+ + ++GVL+AC H
Sbjct: 384 IHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNH 419
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 16/178 (8%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV ++V+ Y G++D AR+ FD M ++D VLW ++IDGY R AL LF+EM
Sbjct: 146 DVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMP 205
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
D F+ ++ + + E + D+ +N + + NA+I+ Y D +
Sbjct: 206 ER----DAFSWTVLVDGLSKCGKV---ESARKLFDQMPCRN-LVSWNAMINGYMKSGDFD 257
Query: 125 KAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
A + D +W MI G ++G A+ MF ML+ +P V VLSA
Sbjct: 258 SALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSA 315
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 9/140 (6%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
AR FD++ R + W +I Y+ + + LF E+ + D FT+ ++ A
Sbjct: 66 ARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHEL-VHEYLPDNFTLPCVIKGCAR 124
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTM 136
L + G+ I K +D+F +L++MY C +++ A+ KD W ++
Sbjct: 125 LGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSL 184
Query: 137 IVGLAISGNGDKALDMFSQM 156
I G A G D AL +F +M
Sbjct: 185 IDGYARCGEIDIALQLFEEM 204
>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 697
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 109/185 (58%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ +W ++ Y G V+ A F+QMP +D + WT MI Y + ++++AL ++
Sbjct: 327 MPERNTATWNTMIDGYARLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIY 386
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM+ + I+ DE T+ ++ +A A++ AL+LG+ I Y+ + D++ G+AL+DMY C
Sbjct: 387 SEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKC 446
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ + K+ + W +I GLA+ G +KAL MF+ M R I P+ V ++ +L
Sbjct: 447 GSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISIL 506
Query: 173 SACTH 177
SACTH
Sbjct: 507 SACTH 511
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 9/137 (6%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-QTSNIMGDEFTIVSILTARANLRA 87
F QM + ++ AMI G++ AL + M + SN++ +T S++ A + A
Sbjct: 191 FTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACTFMCA 250
Query: 88 LDLGEWIKTYIDKNKVKNDIFAGNALIDMYC---ICADVEK-----AQKDKFSWTTMIVG 139
++LG+ + +I K ++ +F AL+D Y I ++ K ++D F+WT M+
Sbjct: 251 VELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTAMVSA 310
Query: 140 LAISGNGDKALDMFSQM 156
LA G+ D A +F +M
Sbjct: 311 LARVGDMDSARKLFEEM 327
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 12/166 (7%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFQ 61
N DV +A+V Y G +D++ F ++ +++ W A+I+G L V+ + E AL +F
Sbjct: 430 NLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEG-LAVHGYAEKALRMFA 488
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN-KVKNDIFAGNALIDMYCIC 120
M+ IM + T +SIL+A + +D G + ++ ++ DI ++DM
Sbjct: 489 IMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKS 548
Query: 121 ADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQML 157
+ +A + + W ++ G + GN + A D Q++
Sbjct: 549 GYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQLM 594
>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
Length = 672
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 112/183 (61%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++DV+S+TA+++ Y +RG ++ A++ FD++P +D V W AMI GY +++AL LF+E
Sbjct: 138 HRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKE 197
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M +N+ DE T+ ++++A A +++LG + ++I+ + +++ NALID+Y C +
Sbjct: 198 MMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGE 257
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
VE A KD SW T+I G +AL +F +MLR+ P++V + +L A
Sbjct: 258 VETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPA 317
Query: 175 CTH 177
C H
Sbjct: 318 CAH 320
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 104/181 (57%), Gaps = 13/181 (7%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G+V+ A + + + +D + W +I GY +N ++EAL LFQEM S
Sbjct: 247 ALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETP 306
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKN----KVKNDIFAGNALIDMYCICADVEKA 126
++ T++SIL A A+L A+D+G WI YIDK V N +LIDMY C D++ A
Sbjct: 307 NDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAA 366
Query: 127 Q---------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+ +W MI G A+ G + A D+FS+M + I+PD++ +VG+LSAC+H
Sbjct: 367 PQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSH 426
Query: 178 N 178
+
Sbjct: 427 S 427
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 81/193 (41%), Gaps = 39/193 (20%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A F+ +PE + ++W M G+ + AL L+ M + ++ + FT +L + A
Sbjct: 28 AISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAK 87
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK---------------- 128
+ G+ I ++ K D++ +LI MY +E AQK
Sbjct: 88 SKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTAL 147
Query: 129 -----------------------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165
D SW MI G A +GN KAL++F +M++ ++KPDE
Sbjct: 148 ITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDE 207
Query: 166 VAYVGVLSACTHN 178
V+SAC +
Sbjct: 208 STMATVVSACAQS 220
>gi|116309314|emb|CAH66401.1| OSIGBa0155K12.4 [Oryza sativa Indica Group]
Length = 486
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 104/185 (56%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ DV+S A+V Y+ G++ +A + F+ MPERD V W ++ G + R +A+ LF
Sbjct: 159 MRAPDVVSHNALVHGYVKAGRLGLAVRVFEGMPERDAVSWGTVVAGCAKAGRLEKAVRLF 218
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M+ D+ + ++L+ A L ALD G+ + Y+ + + + +++ ++D+Y C
Sbjct: 219 DRMRREGYRPDDVALAAVLSCCAQLGALDKGQEVHEYVRRTRPRPNVYLCTGIVDLYAKC 278
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VE A +K+ F+W +IVGLA+ G+G ALD F +ML +PD ++GVL
Sbjct: 279 GRVEVAREVFDACPEKNVFTWNALIVGLAMHGHGTVALDYFDRMLVEGFRPDGTTFLGVL 338
Query: 173 SACTH 177
C+H
Sbjct: 339 IGCSH 343
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 55/154 (35%), Gaps = 10/154 (6%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
+V T IV Y G+V++AR+ FD PE++ W A+I G AL F
Sbjct: 261 PRPNVYLCTGIVDLYAKCGRVEVAREVFDACPEKNVFTWNALIVGLAMHGHGTVALDYFD 320
Query: 62 EMQTSNIMGDEFTIVSIL----------TARANLRALDLGEWIKTYIDKNKVKNDIFAGN 111
M D T + +L TAR + + + D+
Sbjct: 321 RMLVEGFRPDGTTFLGVLIGCSHAGLVDTARRIFYEMQHNHGVPRELKHYGCMADLLGRA 380
Query: 112 ALIDMYCICADVEKAQKDKFSWTTMIVGLAISGN 145
LID + D + W ++ G + GN
Sbjct: 381 GLIDEAMEMISSMPMEADTYVWGGILAGCRMHGN 414
>gi|21740620|emb|CAD40778.1| OSJNBb0012E08.2 [Oryza sativa Japonica Group]
Length = 486
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 104/185 (56%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ DV+S A+V Y+ G++ +A + F+ MPERD V W ++ G + R +A+ LF
Sbjct: 159 MRAPDVVSHNALVHGYVKAGRLGLAVRVFEGMPERDAVSWGTVVAGCAKAGRLEKAVRLF 218
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M+ D+ + ++L+ A L ALD G+ + Y+ + + + +++ ++D+Y C
Sbjct: 219 DRMRREGYRPDDVALAAVLSCCAQLGALDKGQEVHEYVRRTRPRPNVYLCTGIVDLYAKC 278
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VE A +K+ F+W +IVGLA+ G+G ALD F +ML +PD ++GVL
Sbjct: 279 GRVEVAREVFDACPEKNVFTWNALIVGLAMHGHGTVALDYFDRMLVEGFRPDGTTFLGVL 338
Query: 173 SACTH 177
C+H
Sbjct: 339 IGCSH 343
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 55/154 (35%), Gaps = 10/154 (6%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
+V T IV Y G+V++AR+ FD PE++ W A+I G AL F
Sbjct: 261 PRPNVYLCTGIVDLYAKCGRVEVAREVFDACPEKNVFTWNALIVGLAMHGHGTVALDYFD 320
Query: 62 EMQTSNIMGDEFTIVSIL----------TARANLRALDLGEWIKTYIDKNKVKNDIFAGN 111
M D T + +L TAR + + + D+
Sbjct: 321 RMLVEGFRPDGTTFLGVLIGCSHAGLVDTARRIFYEMQHNHGVPRELKHYGCMADLLGRA 380
Query: 112 ALIDMYCICADVEKAQKDKFSWTTMIVGLAISGN 145
LID + D + W ++ G + GN
Sbjct: 381 GLIDEAMEMISSMPMEADTYVWGGILAGCRMHGN 414
>gi|356557931|ref|XP_003547263.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Glycine max]
Length = 764
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 107/182 (58%), Gaps = 8/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ + ++V+ + G +D + FD+M +R+ V W AMI GY + +AL LF EM+
Sbjct: 403 DIATQNSLVTMHAKCGHLDQSSIVFDKMNKRNLVSWNAMITGYAQNGYVCKALFLFNEMR 462
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ + D TIVS+L A+ L LG+WI +++ +N ++ I +L+DMYC C D++
Sbjct: 463 SDHQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCKCGDLD 522
Query: 125 KAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
AQ+ D SW+ +IVG G G+ AL +S+ L + +KP+ V ++ VLS+C+
Sbjct: 523 IAQRCFNQMPSHDLVSWSAIIVGYGYHGKGETALRFYSKFLESGMKPNHVIFLSVLSSCS 582
Query: 177 HN 178
HN
Sbjct: 583 HN 584
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 96/174 (55%), Gaps = 8/174 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T+++ Y+ G +DIA + F++ ++D VLWTAMI G ++ +AL +F++M +
Sbjct: 307 TSLIVMYLKGGNIDIAFRMFERSLDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVK 366
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
T+ S++TA A L + +LG + Y+ ++++ DI N+L+ M+ C ++++
Sbjct: 367 SSTATMASVITACAQLGSYNLGTSVHGYMFRHELPMDIATQNSLVTMHAKCGHLDQSSIV 426
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+++ SW MI G A +G KAL +F++M PD + V +L C
Sbjct: 427 FDKMNKRNLVSWNAMITGYAQNGYVCKALFLFNEMRSDHQTPDSITIVSLLQGC 480
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 8/173 (4%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++S Y ++ +R+ FD M +RD V W +++ Y ++ E L L + M+
Sbjct: 207 SMLSMYGKCRNIEYSRKLFDYMDQRDLVSWNSLVSAYAQIGYICEVLLLLKTMRIQGFEP 266
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA---- 126
D T S+L+ A+ L LG + I + D +LI MY +++ A
Sbjct: 267 DPQTFGSVLSVAASRGELKLGRCLHGQILRTCFDLDAHVETSLIVMYLKGGNIDIAFRMF 326
Query: 127 ----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
KD WT MI GL +G+ DKAL +F QML+ +K V++AC
Sbjct: 327 ERSLDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKSSTATMASVITAC 379
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 17/175 (9%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+++++ Y G D+AR+ FD MPER+ V WT++I Y R R EA +LF EM+ I
Sbjct: 108 SSLINFYAKFGFADVARKVFDFMPERNVVPWTSIIGCYSRTGRVPEAFSLFDEMRRQGIQ 167
Query: 70 GDEFTIVSIL---TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126
T++S+L + A+++ L + ++ +DI N+++ MY C ++E +
Sbjct: 168 PSSVTMLSLLFGVSELAHVQCLHGSAILYGFM------SDINLSNSMLSMYGKCRNIEYS 221
Query: 127 --------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
Q+D SW +++ A G + L + M +PD + VLS
Sbjct: 222 RKLFDYMDQRDLVSWNSLVSAYAQIGYICEVLLLLKTMRIQGFEPDPQTFGSVLS 276
>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 67/183 (36%), Positives = 111/183 (60%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+++V +++ Y ++D AR+ FD++ E V + AMI GY R +R EAL+LF+E
Sbjct: 153 SENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEALSLFRE 212
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+Q N+ + T++S+L++ A L ALDLG+W+ Y+ KN + ALIDMY C
Sbjct: 213 LQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTALIDMYAKCGS 272
Query: 123 VEK--------AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
++ A +D +W+ MI+ AI G+G KA+ +F +M +A +PDE+ ++G+L A
Sbjct: 273 LDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYA 332
Query: 175 CTH 177
C+H
Sbjct: 333 CSH 335
Score = 85.5 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 49/159 (30%), Positives = 85/159 (53%), Gaps = 8/159 (5%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A FDQ+P+ D VL+ M GY R + A TLF ++ S + D++T S+L A A+
Sbjct: 74 AHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACAS 133
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--DKF------SWTTM 136
+AL+ G + K + +++ LI+MY C +++ A++ DK ++ M
Sbjct: 134 CKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAM 193
Query: 137 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
I G A ++AL +F ++ ++KP +V + VLS+C
Sbjct: 194 ITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSC 232
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 27/167 (16%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ Y G +D A F+ M RD W+AMI Y +A++LF+EM+ +
Sbjct: 261 TALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTE 320
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
DE T + +L A ++ ++ G E+ DK V I ++D+ +E+A +
Sbjct: 321 PDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYE 380
Query: 129 DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
IVGL I+P + + +LSAC
Sbjct: 381 -------FIVGL-------------------PIRPTPILWRTLLSAC 401
>gi|38345134|emb|CAE02724.2| OSJNBa0055H05.11 [Oryza sativa Japonica Group]
gi|215697200|dbj|BAG91194.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 408
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 107/182 (58%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
K+++ T +V Y G+V+IA F+ MP +D V W+AMI GY ++ EAL LF +M
Sbjct: 74 KEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPMEALNLFHDM 133
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
Q S + DE T++S+++A AN+ AL+ I ++++ + + + GNALIDM+ C +
Sbjct: 134 QRSGVKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILPIGNALIDMFSKCGSL 193
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
A QK+ +WT++I A+ G+G AL +F M I+P+ V ++G+L AC
Sbjct: 194 TLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYAC 253
Query: 176 TH 177
H
Sbjct: 254 CH 255
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 39/153 (25%)
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M+ S ++ D+ I ++L+ A+ R L G+ I +Y+ + D AL++MY CAD
Sbjct: 1 MKRSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMYASCAD 60
Query: 123 VEKAQ---------------------------------------KDKFSWTTMIVGLAIS 143
+E A+ KD SW+ MI G A S
Sbjct: 61 MEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAES 120
Query: 144 GNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+AL++F M R+ +KPDE+ + V+SAC
Sbjct: 121 SKPMEALNLFHDMQRSGVKPDEITMLSVISACA 153
>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 601
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 103/185 (55%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW+ +V Y G +++AR FD+MP ++ V WT ++ G+ REA++LF
Sbjct: 244 MPERNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLF 303
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M+ + + D T++SIL A A L LGE I I N K NAL+DMY C
Sbjct: 304 DQMEKACLKLDNGTVMSILAACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKC 363
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ A KD SW M+ GLA+ G+G KAL++F +M P++V +GVL
Sbjct: 364 GRLNIAYDVFNDIKNKDVVSWNAMLQGLAMHGHGVKALELFKRMKEEGFSPNKVTMIGVL 423
Query: 173 SACTH 177
ACTH
Sbjct: 424 CACTH 428
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 31/172 (18%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+DV+SW +++S G + AR+ FD+MPE+D + W M+DGY++V + +A LF EM
Sbjct: 185 RDVVSWNSMISGLAKGGLYEEARKVFDEMPEKDGISWNTMLDGYVKVGKMDDAFKLFDEM 244
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
N++ ++ +A D+ E + DK VKN +
Sbjct: 245 PERNVVSWSTMVLGY------CKAGDM-EMARMLFDKMPVKNLV---------------- 281
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
SWT ++ G A G +A+ +F QM +A +K D + +L+AC
Sbjct: 282 --------SWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNGTVMSILAAC 325
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 11/147 (7%)
Query: 21 QVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80
Q+ +A F+Q+ + L+ MI + ++ +A F MQ D FT +L
Sbjct: 67 QMLLATNAFNQVQYPNVHLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFLLK 126
Query: 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE-----------KAQKD 129
L + E + I+K +D+F N+LID Y C A++D
Sbjct: 127 VCTGNVWLPVIESVHAQIEKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGARRD 186
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQM 156
SW +MI GLA G ++A +F +M
Sbjct: 187 VVSWNSMISGLAKGGLYEEARKVFDEM 213
Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+V Y G+++IA F+ + +D V W AM+ G +AL LF+ M+
Sbjct: 355 ALVDMYAKCGRLNIAYDVFNDIKNKDVVSWNAMLQGLAMHGHGVKALELFKRMKEEGFSP 414
Query: 71 DEFTIVSILTARANLRALDLG 91
++ T++ +L A + +D G
Sbjct: 415 NKVTMIGVLCACTHAGLIDDG 435
>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
Length = 635
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 71/183 (38%), Positives = 98/183 (53%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ D + W+A+ Y G+VD AR FD+MP RD V WTAM++ Y R E LF
Sbjct: 194 DADAVVWSALADMYAKCGRVDDARSVFDRMPVRDVVSWTAMVERYFDARRDGEGFRLFVR 253
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M S I +EFT +L A A + LG+ + + K++ + FA +AL+ MY D
Sbjct: 254 MLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGRMTKSRAGDSCFAESALVHMYSKYGD 313
Query: 123 VEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+ A + D SWT MI G A +G D+AL F +LR+ +PD V +VGVLSA
Sbjct: 314 MGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFDMLLRSGCRPDHVTFVGVLSA 373
Query: 175 CTH 177
C H
Sbjct: 374 CAH 376
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 57/188 (30%), Positives = 91/188 (48%), Gaps = 14/188 (7%)
Query: 1 MKNKDVISWTAIVSRYIN--RGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALT 58
+ + DV S+ +V+ RG AR FD+MP RD+ W+A++ + R + R AL
Sbjct: 87 LPSTDVCSYNTLVAALGRSPRGLAS-ARALFDRMPRRDHFSWSAIVSAHARHGQPRAALA 145
Query: 59 LFQEM---QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID 115
+++ M S + +EFT S L A R G + ++ + + D +AL D
Sbjct: 146 IYRRMLREPGSAGVDNEFTASSALAAATAARCARAGRELHCHVVRRGIDADAVVWSALAD 205
Query: 116 MYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 167
MY C V+ A+ +D SWT M+ + + +F +MLR+ I+P+E
Sbjct: 206 MYAKCGRVDDARSVFDRMPVRDVVSWTAMVERYFDARRDGEGFRLFVRMLRSGIQPNEFT 265
Query: 168 YVGVLSAC 175
Y GVL AC
Sbjct: 266 YAGVLRAC 273
Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 10/146 (6%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+A+V Y G + A + F MP+ D V WTAMI GY + + EAL F + S
Sbjct: 302 SALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFDMLLRSGCR 361
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYI-DKNKVKNDIFAGNALIDMYCICADVEKAQK 128
D T V +L+A A+ +D G I I D+ +++ +ID+ E+A++
Sbjct: 362 PDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYACVIDLLSRSGLFERAEE 421
Query: 129 ---------DKFSWTTMIVGLAISGN 145
+KF W +++ G I N
Sbjct: 422 MINTMSVKPNKFLWASLLGGCRIHKN 447
>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 663
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 113/186 (60%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +KDV+SWT +++ Y N G +D A + F+QMP ++ V W ++I +++ + EA+ LF
Sbjct: 296 MLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLF 355
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M S +M ++ T+V+IL++ +++ L LG+ +YI N + NA+IDMY C
Sbjct: 356 YRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAIIDMYAKC 415
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ A +K+ SW +I LA+ G G +A++MF +M + + PDE+ + G+L
Sbjct: 416 GALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLL 475
Query: 173 SACTHN 178
SAC+H+
Sbjct: 476 SACSHS 481
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 85/154 (55%), Gaps = 8/154 (5%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
AI++ Y+ G + AR+ FD + ER V W +MI+GY ++ R EA+ +F+EMQ +
Sbjct: 174 AILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEP 233
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--- 127
D FT+V +L+ DLG ++ ++ ++ D NAL+DMY C +++ A+
Sbjct: 234 DVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVF 293
Query: 128 -----KDKFSWTTMIVGLAISGNGDKALDMFSQM 156
KD SWT MI A G D AL+ F+QM
Sbjct: 294 DQMLDKDVVSWTCMINAYANHGLIDCALEFFNQM 327
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 8/179 (4%)
Query: 6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT 65
V++ +VS + + A + FDQ+P+ + ++ +I GY + ++L L++ M
Sbjct: 68 VLTLGKLVSSSVQLRDLRYAHKLFDQIPQPNKFMFNHLIKGYSNSSDPIKSLLLYRRMVC 127
Query: 66 SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK 125
I+ ++FTI +L A A LG + K + + NA++++Y C +
Sbjct: 128 DGILPNQFTIPFVLKACAAKSCYWLGVCVHAQSFKLGMGSHACVQNAILNIYVACGLITS 187
Query: 126 A--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A ++ SW +MI G + G ++A+ MF +M ++PD VG+LS T
Sbjct: 188 ARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVST 246
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 25/165 (15%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
AI+ Y G + A F MPE++ V W +I +EA+ +F++MQ S +
Sbjct: 407 AIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQASGVCP 466
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDK 130
DE T +L+A ++ +D G+ Y + + N F I DVE
Sbjct: 467 DEITFTGLLSACSHSGLVDTGQ---HYFE---IMNLTFG---------ISPDVEH----- 506
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ L G +A+ + +M +KPD V + +L AC
Sbjct: 507 --YACMVDLLGRRGLLGEAISLIKKM---PVKPDVVVWSALLGAC 546
>gi|356507694|ref|XP_003522599.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 535
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 107/187 (57%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +K+V+SW ++ RYI G ++ AR+ F MP+RD V W ++I G + V + A+ LF
Sbjct: 210 MPHKNVVSWNTVIGRYIRLGDIEGARRVFQIMPQRDAVSWNSLIAGCVSVKDYEGAMGLF 269
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EMQ + + E T++S+L A A AL++G I + K + + GNAL++MY C
Sbjct: 270 SEMQNAEVRPTEVTLISVLGACAETGALEMGSKIHESLKACGHKIEGYLGNALLNMYSKC 329
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRA--SIKPDEVAYVG 170
+ A K W MIVGLA+ G ++AL +FS+M +++P+ V ++G
Sbjct: 330 GKLNSAWEVFNGMRIKTLSCWNAMIVGLAVHGYCEEALQLFSEMESGLDTVRPNRVTFLG 389
Query: 171 VLSACTH 177
VL AC+H
Sbjct: 390 VLIACSH 396
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 68/173 (39%), Gaps = 47/173 (27%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y G V +A+ FD++ R V W MI Y RVN + A L + M N++
Sbjct: 158 SLLCMYSQCGLVHVAQHLFDEISNRSLVSWNIMISAYDRVNDSKSADYLLESMPHKNVV- 216
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA---- 126
W N +I Y D+E A
Sbjct: 217 ---------------------SW-----------------NTVIGRYIRLGDIEGARRVF 238
Query: 127 ----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
Q+D SW ++I G + + A+ +FS+M A ++P EV + VL AC
Sbjct: 239 QIMPQRDAVSWNSLIAGCVSVKDYEGAMGLFSEMQNAEVRPTEVTLISVLGAC 291
>gi|242042383|ref|XP_002468586.1| hypothetical protein SORBIDRAFT_01g048560 [Sorghum bicolor]
gi|241922440|gb|EER95584.1| hypothetical protein SORBIDRAFT_01g048560 [Sorghum bicolor]
Length = 581
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 68/181 (37%), Positives = 103/181 (56%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+SWT +V + G+VD AR+ FD MPER+ V W AM+ GY++ RF +AL +F EM+
Sbjct: 170 DVVSWTTMVGGLVKLGRVDDARELFDGMPERNLVSWNAMMSGYVKTGRFLDALEVFDEMR 229
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ G+ F + + A AL G + +++++ ++ D A++DMYC C VE
Sbjct: 230 ARGVDGNAFVAATAVVACTGAGALARGREVHRWVERSGIEMDDKLATAVVDMYCKCGCVE 289
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+A + SW MI G A+ G G+ AL++F M R + PD+V V VL+AC
Sbjct: 290 EAWRVFEALPARGLTSWNCMIGGFAVHGRGEDALNLFGLMEREGVAPDDVTLVNVLTACA 349
Query: 177 H 177
H
Sbjct: 350 H 350
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G V+ A + F+ +P R W MI G+ R +AL LF M+ +
Sbjct: 276 TAVVDMYCKCGCVEEAWRVFEALPARGLTSWNCMIGGFAVHGRGEDALNLFGLMEREGVA 335
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKN-KVKNDIFAGNALIDMYCICADVEKAQK 128
D+ T+V++LTA A+ + G YI + + + ++D+Y +E+A+K
Sbjct: 336 PDDVTLVNVLTACAHAGMVSEGRHYFNYISQRYGIVPKMEHYGCMVDLYGRAGQLEEAKK 395
>gi|359491588|ref|XP_002281032.2| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g61800 [Vitis vinifera]
Length = 576
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 67/183 (36%), Positives = 104/183 (56%), Gaps = 9/183 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRF-REALTLFQE 62
KDV+S+ A++ +I G D AR+ FD+MP RD V W ++ GY + +A+ LF
Sbjct: 193 KDVVSYNALIGGFIKVGDTDRARRLFDKMPIRDAVSWGTLLAGYAQSGDLCMDAIQLFNR 252
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M S + D +VS L+A A L L+ G+ I YI +N++ + F L+D+Y C
Sbjct: 253 MLISTVRPDNIALVSALSACAQLGELEQGKSIHVYIKQNRIPINAFLSTGLVDLYAKCGC 312
Query: 123 VEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+E A+ K+ F+W ++VGL + G G +L FS+M+ A IKPD V+++G+L
Sbjct: 313 IETAREIFESSPDKNLFTWNALLVGLGMHGRGHLSLHYFSRMIEAGIKPDGVSFLGILVG 372
Query: 175 CTH 177
C H
Sbjct: 373 CGH 375
>gi|224092607|ref|XP_002309680.1| predicted protein [Populus trichocarpa]
gi|222855656|gb|EEE93203.1| predicted protein [Populus trichocarpa]
Length = 500
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 113/188 (60%), Gaps = 12/188 (6%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQC--FDQMPERDYVLWTAMIDGYLRVNRFREALT 58
M KD++SW +++S YI +G+ D+ R C F +MP ++ + W M+ G+L+ + E L
Sbjct: 173 MAEKDIVSWNSMISAYI-QGE-DMERACDLFREMPAKNIITWNTMVKGFLQNQLYAEVLD 230
Query: 59 LFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC 118
LF EM+T+N + D T+ +L+A A+ +L G + Y N + + ALIDMY
Sbjct: 231 LFDEMKTTNCLPDYLTVTGVLSACAHSGSLKKGTEVHIYAIDNGLASSPHVTTALIDMYA 290
Query: 119 ICADVE-------KAQ-KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C ++ K+Q KD + W +I GLA+ G+G AL++F++M + +PD++ ++G
Sbjct: 291 KCGSIQQGLQVFYKSQVKDIYCWNALISGLALHGHGYAALNIFNKMRKNHTRPDDITFIG 350
Query: 171 VLSACTHN 178
+LSAC+H+
Sbjct: 351 LLSACSHS 358
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 90/190 (47%), Gaps = 28/190 (14%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ V TA+++ Y + V A + F++MP +D V W +++D Y ++ +AL +F
Sbjct: 82 SSHVFVQTALLNMYRSHSCVADACKVFEKMPVKDVVAWNSILDAYASTDQMDDALKVFNS 141
Query: 63 M-----QTSNIMGDEF-TIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116
M + NIM + +I L+AR+ I N + DI + N++I
Sbjct: 142 MPLKDLSSFNIMISGYSSIGKTLSARS--------------IFDNMAEKDIVSWNSMISA 187
Query: 117 YCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
Y D+E+A K+ +W TM+ G + + LD+F +M + PD +
Sbjct: 188 YIQGEDMERACDLFREMPAKNIITWNTMVKGFLQNQLYAEVLDLFDEMKTTNCLPDYLTV 247
Query: 169 VGVLSACTHN 178
GVLSAC H+
Sbjct: 248 TGVLSACAHS 257
>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 661
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 70/187 (37%), Positives = 104/187 (55%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV SWT +V+ Y G ++ A + FD MP R+ V W+ MI Y + N+ EA+ LF
Sbjct: 304 MAVKDVYSWTTMVNAYAKCGDLESAARLFDDMPRRNAVSWSCMIAAYSQANQPEEAVRLF 363
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWI-KTYIDKNKVKNDIFAGNALIDMYCI 119
+ M + +VS+L+A A L LDLG WI Y+ K + GNA ID+Y
Sbjct: 364 KAMIEEGVEPINAGLVSVLSACAQLGCLDLGRWIYDNYVISGKAVLTVNLGNAFIDVYAK 423
Query: 120 CAD--------VEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C D E A+++ SW +MI+ A+ G ++ L +F Q+ I PDE+ ++G+
Sbjct: 424 CGDFDAASKLFAEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIVPDEITFLGL 483
Query: 172 LSACTHN 178
LSAC+H+
Sbjct: 484 LSACSHS 490
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 57/214 (26%), Positives = 92/214 (42%), Gaps = 40/214 (18%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+ V+ A+V Y N + AR FD+MP+RD V WT ++DGY R EA +F M
Sbjct: 174 QSVLVGNALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYARRGLADEAWRVFCRM 233
Query: 64 QTS-NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM------ 116
+ + +E T+V++++A + L G + Y+ V + NALIDM
Sbjct: 234 VVAGGLQPNEVTLVAVVSAMGQMGLLAFGRMVYRYVADGGVGRSVNLENALIDMFGKFGC 293
Query: 117 -------------------------YCICADVEKA--------QKDKFSWTTMIVGLAIS 143
Y C D+E A +++ SW+ MI + +
Sbjct: 294 AASAREVFDSMAVKDVYSWTTMVNAYAKCGDLESAARLFDDMPRRNAVSWSCMIAAYSQA 353
Query: 144 GNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
++A+ +F M+ ++P V VLSAC
Sbjct: 354 NQPEEAVRLFKAMIEEGVEPINAGLVSVLSACAQ 387
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 14/151 (9%)
Query: 37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN---LRALDLGEW 93
Y+L T M+ +LR A LF+ + ++ D T+V + A A+ + GE
Sbjct: 103 YMLAT-MMRAFLRARLPSRASALFRRVIRESLPADARTLVFAIKAAASEHEHHSPSGGEG 161
Query: 94 IKTYIDK-NKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISG 144
+ K V + GNAL+ Y + A+ +D SWTT++ G A G
Sbjct: 162 VHCVALKWGHVAQSVLVGNALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYARRG 221
Query: 145 NGDKALDMFSQMLRA-SIKPDEVAYVGVLSA 174
D+A +F +M+ A ++P+EV V V+SA
Sbjct: 222 LADEAWRVFCRMVVAGGLQPNEVTLVAVVSA 252
>gi|242047426|ref|XP_002461459.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
gi|241924836|gb|EER97980.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
Length = 568
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 72/178 (40%), Positives = 105/178 (58%), Gaps = 11/178 (6%)
Query: 11 AIVSRYINRGQVDIARQCFDQMP--ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI 68
++V Y G + A + FD++P ER+ V W +M++G+ R E LT+F+EM N
Sbjct: 158 SLVHLYGACGLFESAHRVFDEIPVGERNLVSWNSMLNGFAANGRPNEVLTIFREMLDVNF 217
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK--- 125
M D FT+VS+LTA A + AL LG + Y+ K + + GNALID+Y C VE
Sbjct: 218 MPDGFTVVSVLTASAEIGALALGRRVHVYLTKVGLVENSHVGNALIDLYAKCGGVEDARR 277
Query: 126 ------AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
A++ SWT++IVGLA++G G +AL++F M R + P E+ VGVL AC+H
Sbjct: 278 VFEEMGARRTVVSWTSLIVGLAVNGFGKEALELFGIMEREKLVPTEITMVGVLYACSH 335
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 28/167 (16%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVL-WTAMIDGYLRVNRF-REALTLFQEMQTSNI 68
A++ Y G V+ AR+ F++M R V+ WT++I G L VN F +EAL LF M+ +
Sbjct: 261 ALIDLYAKCGGVEDARRVFEEMGARRTVVSWTSLIVG-LAVNGFGKEALELFGIMEREKL 319
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
+ E T+V +L A ++ +D G ++ N++K + + + C+
Sbjct: 320 VPTEITMVGVLYACSHCGLVDDG-----FMYFNRMKEEYNIAPRIEHLGCM--------- 365
Query: 129 DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ + G K + + +L ++P+ V + +L AC
Sbjct: 366 -----------VDLLGRAGKVKEAYDYILTMPLEPNAVVWRTLLGAC 401
>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 462
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 108/176 (61%), Gaps = 9/176 (5%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y N G V A + FD+MPE+D V W ++I+G+ + EAL L+ EM + I
Sbjct: 28 SLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKP 87
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--- 127
D FTIVS+L+A A + AL LG+ + Y+ K + ++ + N L+D+Y C VE+A+
Sbjct: 88 DGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLF 147
Query: 128 -----KDKFSWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVAYVGVLSACTH 177
K+ SWT++IVGLA++G G +A+++F M + P E+ +VG+L AC+H
Sbjct: 148 DEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSH 203
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 8/95 (8%)
Query: 90 LGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLA 141
LGE I + + ++ + I+ N+L+ +Y C DV A +KD +W ++I G A
Sbjct: 6 LGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFA 65
Query: 142 ISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+G ++AL ++++M IKPD V +LSAC
Sbjct: 66 ENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACA 100
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 89/174 (51%), Gaps = 15/174 (8%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRF-REALTLFQE 62
+++ S ++ Y G+V+ A+ FD+M +++ V WT++I G L VN F +EA+ LF+
Sbjct: 122 RNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVG-LAVNGFGKEAIELFKY 180
Query: 63 MQ-TSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M+ T ++ E T V IL A ++ + G E+ + ++ K++ I ++D+
Sbjct: 181 MESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARA 240
Query: 121 ADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165
V+KA Q + W T++ + G+ D L F+++ ++P+
Sbjct: 241 GQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSD--LAEFARIQILQLEPNH 292
>gi|30017569|gb|AAP12991.1| hypothetical protein [Oryza sativa Japonica Group]
gi|40539031|gb|AAR87288.1| putative PPR repeat containing protein [Oryza sativa Japonica
Group]
gi|108711017|gb|ABF98812.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 676
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 68/182 (37%), Positives = 102/182 (56%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+D ISW +V+ + N G +D+A + F + P RD + W A++ GY R F + LF +M
Sbjct: 295 RDGISWNTMVAGFANAGLLDLASKYFGEAPARDIISWNALLAGYARYEEFSATMILFHDM 354
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
S+++ D+ T V++++A A L+ + ++ K D F +AL+DMYC C +
Sbjct: 355 LASSVIPDKVTAVTLISAVAGKGTLNSARSVHGWVVKEHGTQDSFLASALVDMYCKCGSI 414
Query: 124 -------EKA-QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
EKA KD WT MI GLA G+GD ALD+F +M +P+ V V VLSAC
Sbjct: 415 KLAYAVFEKAVDKDVTLWTAMISGLAFHGHGDVALDLFWKMQAEGTEPNGVTLVAVLSAC 474
Query: 176 TH 177
+H
Sbjct: 475 SH 476
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 52/205 (25%), Positives = 87/205 (42%), Gaps = 41/205 (20%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y++ G V+ A F P D V M+ GY++ +AL F+ M + I
Sbjct: 168 SLIKMYLDAGDVEAAEAMFRCAPTADAVSCNIMLSGYVKGGCSGKALRFFRGMASRGIGV 227
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKND--IFAGNALIDMYCICADV----- 123
D++T V++L L+ LG + + + D + NAL+DMY C ++
Sbjct: 228 DQYTAVALLACCGRLKKAVLGRSVHGVVVRRIGVADRGLILSNALLDMYAKCGEMNTAMR 287
Query: 124 ---EKAQKDKFSWTTMIVGLAISGNGDKA------------------------------- 149
E ++D SW TM+ G A +G D A
Sbjct: 288 VFDEAGERDGISWNTMVAGFANAGLLDLASKYFGEAPARDIISWNALLAGYARYEEFSAT 347
Query: 150 LDMFSQMLRASIKPDEVAYVGVLSA 174
+ +F ML +S+ PD+V V ++SA
Sbjct: 348 MILFHDMLASSVIPDKVTAVTLISA 372
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 9/125 (7%)
Query: 59 LFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC 118
L+ M S+I DE T +S+L + + +G+ + ++ + + ++ N+LI MY
Sbjct: 116 LYMSMLASSIHPDEQTFLSLLKS-VDAERRSVGKQVHAHVVVTGLHSRVYLRNSLIKMYL 174
Query: 119 ICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
DVE A+ D S M+ G G KAL F M I D+ V
Sbjct: 175 DAGDVEAAEAMFRCAPTADAVSCNIMLSGYVKGGCSGKALRFFRGMASRGIGVDQYTAVA 234
Query: 171 VLSAC 175
+L+ C
Sbjct: 235 LLACC 239
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 44/88 (50%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+D +A+V Y G + +A F++ ++D LWTAMI G AL LF +M
Sbjct: 396 QDSFLASALVDMYCKCGSIKLAYAVFEKAVDKDVTLWTAMISGLAFHGHGDVALDLFWKM 455
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLG 91
Q + T+V++L+A ++ D G
Sbjct: 456 QAEGTEPNGVTLVAVLSACSHAGLFDEG 483
>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 104/185 (56%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V SW +++ Y G + AR FD+MP+RD + W A+I GY + EAL LF
Sbjct: 242 MPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLF 301
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM+ + T S L+ A + AL+LG+ + + K +++ + GNAL+ MYC C
Sbjct: 302 VEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKC 361
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+++ A +K+ SW TMI G A G G +AL +F M + I PD+V VGVL
Sbjct: 362 GNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVL 421
Query: 173 SACTH 177
SAC+H
Sbjct: 422 SACSH 426
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 16/184 (8%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D +SW ++S Y G++ A++ F++ P RD WTAM+ GY++ EA +F
Sbjct: 149 MPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVF 208
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M N + I + + +A +L E + ++ + N +I Y
Sbjct: 209 DGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPC--------QNVSSWNTMITGYAQN 260
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
D+ +A Q+D SW +I G A SG G++AL +F +M R + + + L
Sbjct: 261 GDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTL 320
Query: 173 SACT 176
S C
Sbjct: 321 STCA 324
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 28/170 (16%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW A++S Y G V A++ FD+MP ++ + W M+ Y++ R +A LF
Sbjct: 56 MPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLF 115
Query: 61 Q-----EMQTSN-IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALI 114
+ E+ + N +MG ++ AR I + D + N +I
Sbjct: 116 ESKADWELISWNCMMGGYVKRNRLVDARG--------------IFDRMPERDEVSWNTMI 161
Query: 115 DMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQM 156
Y ++ +AQ +D F+WT M+ G +G D+A +F M
Sbjct: 162 SGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGM 211
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 18/177 (10%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
A++ Y G +D A F+ + E++ V W MI GY R +EAL LF+ M+ + I+
Sbjct: 352 NALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGIL 411
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ- 127
D+ T+V +L+A ++ +D G E+ + + + +ID+ ++ AQ
Sbjct: 412 PDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQN 471
Query: 128 --------KDKFSWTTMIVGLAISGN---GDKALDMFSQMLRASIKPDEVAYVGVLS 173
D +W ++ I GN G+KA M +M +PD +LS
Sbjct: 472 LMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEM-----EPDNSGMYVLLS 523
>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
Length = 644
Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 103/185 (55%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++VISW A++S + GQV+ A + F MPE + V W AMI GY + + AL LF
Sbjct: 317 MPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLF 376
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+MQ ++ + T +L A A L L+ G + ++ ++D+ GN L+ MY C
Sbjct: 377 GQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKC 436
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E A Q+D S + MIVG AI+G ++L++F QM +KPD V +VGVL
Sbjct: 437 GSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVL 496
Query: 173 SACTH 177
SAC H
Sbjct: 497 SACCH 501
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 86/166 (51%), Gaps = 11/166 (6%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+D+ +VS Y+ G + AR+ FD+MP ++ V WTAMI Y R +EAL F EM
Sbjct: 98 QDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEM 157
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
Q I + FT SIL A +L LGE+ I K ++++F GN L+DMY +
Sbjct: 158 QDVGIQPNHFTFASILPACTDLEV--LGEF-HDEIVKGGFESNVFVGNGLVDMYAKRGCI 214
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI 161
E A Q+D SW MI G +G + AL +F ++ + +
Sbjct: 215 EFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDV 260
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 88/203 (43%), Gaps = 31/203 (15%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+V +V Y RG ++ AR+ FD+MP+RD V W AMI GY++ +AL LFQE+
Sbjct: 197 NVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIP 256
Query: 65 TSNIM------------GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKN------- 105
+++ GD V + + I Y+ VK
Sbjct: 257 KRDVITWNTMMAGYAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQI 316
Query: 106 ----DIFAGNALIDMYCICADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMF 153
++ + NA+I + VE+A K + SW MI G + +G + AL +F
Sbjct: 317 MPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLF 376
Query: 154 SQMLRASIKPDEVAYVGVLSACT 176
QM +KP+ + VL AC
Sbjct: 377 GQMQMVDMKPNTETFAIVLPACA 399
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 26/175 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+ +V Y G ++ AR+ FD+M ++D +AMI GY +E+L LF++MQ
Sbjct: 422 DVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQ 481
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ + D T V +L+A + +D G + Y D + Y I +E
Sbjct: 482 FTGLKPDRVTFVGVLSACCHAGLVDEG---RQYFD------------IMTRFYHITPAME 526
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC-THN 178
+ MI L +G D+A D+ ++M IKPD + +LSAC THN
Sbjct: 527 H-------YGCMIDLLGRAGCFDEANDLINKM---PIKPDADMWGSLLSACRTHN 571
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 9/144 (6%)
Query: 42 AMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN 101
++ + R REAL + Q+M + I T S+L N ++L + + ++ +
Sbjct: 34 GLVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQT 93
Query: 102 KVK-NDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDM 152
+ + DI GN L+ +Y + +A+ K+ SWT MI A +G +AL
Sbjct: 94 QFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGF 153
Query: 153 FSQMLRASIKPDEVAYVGVLSACT 176
F +M I+P+ + +L ACT
Sbjct: 154 FYEMQDVGIQPNHFTFASILPACT 177
>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 766
Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 104/185 (56%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V SW +++ Y G + AR FD+MP+RD + W A+I GY + EAL LF
Sbjct: 323 MPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLF 382
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM+ + T S L+ A + AL+LG+ + + K +++ + GNAL+ MYC C
Sbjct: 383 VEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKC 442
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+++ A +K+ SW TMI G A G G +AL +F M + I PD+V VGVL
Sbjct: 443 GNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVL 502
Query: 173 SACTH 177
SAC+H
Sbjct: 503 SACSH 507
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 16/183 (8%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D +SW ++S Y G++ A++ F++ P RD WTAM+ GY++ EA +F
Sbjct: 230 MPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVF 289
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M N + I + + +A +L E + ++ + N +I Y
Sbjct: 290 DGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPC--------QNVSSWNTMITGYAQN 341
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
D+ +A Q+D SW +I G A SG G++AL +F +M R + + + L
Sbjct: 342 GDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTL 401
Query: 173 SAC 175
S C
Sbjct: 402 STC 404
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 31/187 (16%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D++SW ++S + + AR FDQMPERD V W AM+ GY + +EA +F
Sbjct: 106 MPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIF 165
Query: 61 QEMQTSNIMGDEFTIVS------------ILTARANLRALDLGEWIKTYIDKNKV----- 103
EM N + + + + ++A+ + + Y+ +N++
Sbjct: 166 DEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARG 225
Query: 104 ------KNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKA 149
+ D + N +I Y ++ +AQ +D F+WT M+ G +G D+A
Sbjct: 226 IFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEA 285
Query: 150 LDMFSQM 156
+F M
Sbjct: 286 RRVFDGM 292
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D++ W ++ ++ GQ D A + F+ MP R + W AMI G L ++F A LF++M
Sbjct: 48 DIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMP 107
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
T +++ I + R NLRA L + + D+ + NA++ Y V+
Sbjct: 108 TRDLVSWNVMISGCVRYR-NLRAARL-------LFDQMPERDVVSWNAMLSGYAQNGYVK 159
Query: 125 KAQ--------KDKFSWTTMIVGLAISGNGDKALDMF 153
+A+ K+ SW M+ +G + A +F
Sbjct: 160 EAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLF 196
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 18/176 (10%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G +D A F+ + E++ V W MI GY R +EAL LF+ M+ + I+
Sbjct: 434 ALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILP 493
Query: 71 DEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-- 127
D+ T+V +L+A ++ +D G E+ + + + +ID+ ++ AQ
Sbjct: 494 DDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNL 553
Query: 128 -------KDKFSWTTMIVGLAISGN---GDKALDMFSQMLRASIKPDEVAYVGVLS 173
D +W ++ I GN G+KA M +M +PD +LS
Sbjct: 554 MKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEM-----EPDNSGMYVLLS 604
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 20/186 (10%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + ISW A++S ++ + +ARQ F++MP RD V W MI G +R R A LF
Sbjct: 75 MPRRSSISWNAMISGCLSNDKFYLARQLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLF 134
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M +++ + ++L+ A + K D+ KN I + N ++ Y
Sbjct: 135 DQMPERDVV----SWNAMLSGYAQNGYVKEA---KEIFDEMPCKNSI-SWNGMLAAYVQN 186
Query: 121 ADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E A++ + SW M+ G A +F +M + DEV++ ++
Sbjct: 187 GRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRM----PERDEVSWNTMI 242
Query: 173 SACTHN 178
S N
Sbjct: 243 SGYAQN 248
>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Glycine max]
Length = 628
Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 65/192 (33%), Positives = 109/192 (56%), Gaps = 15/192 (7%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + ++S+TA+++ Y G + AR F+ M +D V W MIDGY + EAL F
Sbjct: 178 MPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFF 237
Query: 61 QEMQTS-------NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNAL 113
++M + +E T+V++L++ + AL+ G+W+ +Y++ N +K ++ G AL
Sbjct: 238 RKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTAL 297
Query: 114 IDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165
+DMYC C +E A+ KD +W +MI+G I G D+AL +F +M +KP +
Sbjct: 298 VDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSD 357
Query: 166 VAYVGVLSACTH 177
+ +V VL+AC H
Sbjct: 358 ITFVAVLTACAH 369
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 25/166 (15%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G ++ AR+ FD M +D V W +MI GY EAL LF EM +
Sbjct: 295 TALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVK 354
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
+ T V++LTA A+ + G W ++F +++ D Y + VE
Sbjct: 355 PSDITFVAVLTACAHAGLVSKG-W------------EVF--DSMKDGYGMEPKVEH---- 395
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ L +G +A D+ M ++PD V + +L AC
Sbjct: 396 ---YGCMVNLLGRAGRMQEAYDLVRSM---EVEPDPVLWGTLLWAC 435
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 46/206 (22%), Positives = 77/206 (37%), Gaps = 50/206 (24%)
Query: 16 YINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTI 75
Y + G + + F + P + LWT +I+ + + F AL+ + +M T I + FT+
Sbjct: 65 YASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTL 124
Query: 76 VSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-------- 127
S+L A L + ++ K + + ++ L+D Y DV AQ
Sbjct: 125 SSLLKA----CTLHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPE 180
Query: 128 -------------------------------KDKFSWTTMIVGLAISGNGDKALDMFSQ- 155
KD W MI G A G ++AL F +
Sbjct: 181 RSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKM 240
Query: 156 ------MLRASIKPDEVAYVGVLSAC 175
++P+E+ V VLS+C
Sbjct: 241 MMMMGGNGNGKVRPNEITVVAVLSSC 266
>gi|357118276|ref|XP_003560882.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 508
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 107/184 (58%), Gaps = 8/184 (4%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
++KD++ W +V+ Y G+++ AR D+ PE+D V W +I GY +EAL +
Sbjct: 190 QHKDLVCWNVMVAAYAKYGEMEKARGLLDRAPEKDVVSWNTIITGYTAKGLLKEALEVLD 249
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
EM+ +M DE TIVS+L+ ANL +L G I + + + I GNAL+ MY C
Sbjct: 250 EMRCVGLMPDEATIVSLLSCCANLGSLGTGRMIHSLHLEGRPCISILPGNALVSMYAKCG 309
Query: 122 DVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
DV+ A ++D ++W ++I GLA G ++++ F++ML + P+E++++ VL
Sbjct: 310 DVQAAMEVFSRMKERDVWTWNSIIGGLAFHGQAEQSVQFFNKMLDEGLCPNEISFLCVLG 369
Query: 174 ACTH 177
AC+H
Sbjct: 370 ACSH 373
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 8/144 (5%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G +D AR+ FD + D + M+ GY A L++ ++ + + D FT +L
Sbjct: 45 GGMDYARKVFDGISHPDLFMHNVMVRGYAHSAAPAAAFVLYRRIEAARLKPDSFTFCYLL 104
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKF 131
A A L G + + K D F NALI+M+ C D+ E ++D
Sbjct: 105 RACAGLPGSCAGYQVHGAVVKLGYFKDAFVRNALINMHAKCGDLLVAGTLLDEAGERDVV 164
Query: 132 SWTTMIVGLAISGNGDKALDMFSQ 155
+ + +I G A G D A +F +
Sbjct: 165 ARSAVIAGHAAKGELDIARQLFDE 188
Score = 43.5 bits (101), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
++ A+VS Y G V A + F +M ERD W ++I G + +++ F +M
Sbjct: 294 SILPGNALVSMYAKCGDVQAAMEVFSRMKERDVWTWNSIIGGLAFHGQAEQSVQFFNKML 353
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGE-WIKTYIDKNKVKNDIFAGNALIDM 116
+ +E + + +L A ++ ++ G+ + I++ +++ + + ++DM
Sbjct: 354 DEGLCPNEISFLCVLGACSHAGLVEDGQRYFSLMINRYRIEPNARHYSCIVDM 406
>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
[Vitis vinifera]
Length = 781
Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 64/176 (36%), Positives = 101/176 (57%), Gaps = 8/176 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+ + Y +++ AR FD+ E+ W AMI GY + +A++LFQEMQ +
Sbjct: 347 TALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVR 406
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-- 127
+ T+ SIL+A A L AL LG+W+ I++ +++IF ALIDMY C + +AQ
Sbjct: 407 PNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRL 466
Query: 128 ------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
K+ +W MI G + G G +AL++F++ML + + P V ++ VL AC+H
Sbjct: 467 FSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSH 522
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 8/176 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ +AIV+ Y +V AR+ FD M ERD VLW M+ G ++ + F EA+ +F +M
Sbjct: 140 DLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMV 199
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
I D T+ ++L A L+ L LG I+ K + + L +Y C ++E
Sbjct: 200 KGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIE 259
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
A Q D S+ MI G + + ++ +F ++L + K + + VG++
Sbjct: 260 TARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLI 315
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 49/176 (27%), Positives = 82/176 (46%), Gaps = 8/176 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T + Y G+++ AR F Q+ + D V + AMI GY N ++ LF+E+ S
Sbjct: 246 TGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEK 305
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
+ +IV ++ L L I + K+ V ++ AL +Y ++E A
Sbjct: 306 VNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLL 365
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+K SW MI G A +G +KA+ +F +M + ++P+ V +LSAC
Sbjct: 366 FDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQ 421
>gi|125587880|gb|EAZ28544.1| hypothetical protein OsJ_12524 [Oryza sativa Japonica Group]
Length = 559
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 102/183 (55%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+D ISW +V+ + N G +D+A + F + P RD + W A++ GY R F + LF +
Sbjct: 177 ERDGISWNTMVAGFANAGLLDLASKYFGEAPARDIISWNALLAGYARYEEFSATMILFHD 236
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M S+++ D+ T V++++A A L+ + ++ K D F +AL+DMYC C
Sbjct: 237 MLASSVIPDKVTAVTLISAVAGKGTLNSARSVHGWVVKEHGTQDSFLASALVDMYCKCGS 296
Query: 123 V-------EKA-QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+ EKA KD WT MI GLA G+GD ALD+F +M +P+ V V VLSA
Sbjct: 297 IKLAYAVFEKAVDKDVTLWTAMISGLAFHGHGDVALDLFWKMQAEGTEPNGVTLVAVLSA 356
Query: 175 CTH 177
C+H
Sbjct: 357 CSH 359
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 87/205 (42%), Gaps = 41/205 (20%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y++ G V+ A F P D V M+ GY++ +AL F+ M + I
Sbjct: 51 SLIKMYLDAGDVEAAEAMFRCAPTADAVSCNIMLSGYVKGGCSGKALRFFRGMASRGIGV 110
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKND--IFAGNALIDMYCICADV----- 123
D++T V++L L+ LG + + + D + NAL+DMY C ++
Sbjct: 111 DQYTAVALLACCGRLKKAVLGRSVHGVVVRRIGVADRGLILSNALLDMYAKCGEMNTAMR 170
Query: 124 ---EKAQKDKFSWTTMIVGLAISGNGDKA------------------------------- 149
E ++D SW TM+ G A +G D A
Sbjct: 171 VFDEAGERDGISWNTMVAGFANAGLLDLASKYFGEAPARDIISWNALLAGYARYEEFSAT 230
Query: 150 LDMFSQMLRASIKPDEVAYVGVLSA 174
+ +F ML +S+ PD+V V ++SA
Sbjct: 231 MILFHDMLASSVIPDKVTAVTLISA 255
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+D +A+V Y G + +A F++ ++D LWTAMI G AL LF +
Sbjct: 278 TQDSFLASALVDMYCKCGSIKLAYAVFEKAVDKDVTLWTAMISGLAFHGHGDVALDLFWK 337
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLG 91
MQ + T+V++L+A ++ D G
Sbjct: 338 MQAEGTEPNGVTLVAVLSACSHAGLFDEG 366
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M S+I DE T +S+L + + +G+ + ++ + + ++ N+LI MY D
Sbjct: 3 MLASSIHPDEQTFLSLLKS-VDAERRSVGKQVHAHVVVTGLHSRVYLRNSLIKMYLDAGD 61
Query: 123 VEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
VE A+ D S M+ G G KAL F M I D+ V +L+
Sbjct: 62 VEAAEAMFRCAPTADAVSCNIMLSGYVKGGCSGKALRFFRGMASRGIGVDQYTAVALLAC 121
Query: 175 C 175
C
Sbjct: 122 C 122
>gi|242066664|ref|XP_002454621.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
gi|241934452|gb|EES07597.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
Length = 496
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 108/185 (58%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V+++ +VS + G VD A + FD MP D V WTA+IDG+++ R EA+ F
Sbjct: 133 MPVRSVVTYNTMVSGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCF 192
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M ++ D T++++++A A + AL LG W+ + + ++ ++ N+LIDMY C
Sbjct: 193 RAMLLDSVEPDYVTLIAVVSACAEVGALGLGMWVHRLVLRQGLERNVRVANSLIDMYARC 252
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
V+ A ++ SW +MIVGLA +G +A+++F +M R KPD V GVL
Sbjct: 253 GQVKLAAQVFHSIRKRTVVSWNSMIVGLAANGLCTEAIELFEEMRRQGFKPDAVTLTGVL 312
Query: 173 SACTH 177
+AC+H
Sbjct: 313 TACSH 317
>gi|115486992|ref|NP_001065983.1| Os12g0114400 [Oryza sativa Japonica Group]
gi|113648490|dbj|BAF29002.1| Os12g0114400, partial [Oryza sativa Japonica Group]
Length = 504
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 108/186 (58%), Gaps = 11/186 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ W A ++R + G +D A + F +MPERD V W ++I GY ++ ++ +AL +F
Sbjct: 190 MPVRNLSWWNAEIARNVRIGYMDEAARIFSEMPERDAVSWNSLISGYTKLGKYTQALGIF 249
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
QEMQ + I E T+V +L A A + LDLG I + + D GNALIDMY C
Sbjct: 250 QEMQENGIQPTELTLVLVLGACAKIGKLDLGTNIHRNLQNKGIVADGLVGNALIDMYAKC 309
Query: 121 ADVEKAQK--DKFS------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ A+K D+ S W MIVG ++ G +AL++F M I+P+ V ++GVL
Sbjct: 310 GMLDLAKKVFDRMSMRDITCWNAMIVGFSVHGCSREALELFDSM---KIEPNPVTFLGVL 366
Query: 173 SACTHN 178
+AC+H
Sbjct: 367 TACSHG 372
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 88/185 (47%), Gaps = 18/185 (9%)
Query: 1 MKNKDVIS----WTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREA 56
++NK +++ A++ Y G +D+A++ FD+M RD W AMI G+ REA
Sbjct: 287 LQNKGIVADGLVGNALIDMYAKCGMLDLAKKVFDRMSMRDITCWNAMIVGFSVHGCSREA 346
Query: 57 LTLFQEMQTSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALID 115
L LF M+ I + T + +LTA ++ ++ G ++ + I+ ++ D+ +ID
Sbjct: 347 LELFDSMK---IEPNPVTFLGVLTACSHGGLVNEGRKYFNSMIEDYRIVPDVKHYGCMID 403
Query: 116 MYCICADVEKAQ---KDKFS------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 166
M C +E+A K+ S W ++ + G+ D A MF LR I D
Sbjct: 404 MLCRYGKIEEAYLMIKENPSTASSVLWKMLLAACRVHGHIDLAY-MFFHELRELILTDNG 462
Query: 167 AYVGV 171
V +
Sbjct: 463 GLVTI 467
>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
Length = 583
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 107/181 (59%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+++ A++ Y+ G A+ FD++P RD V WT MI G ++ + +++L LF M+
Sbjct: 236 NLVLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMR 295
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
T I D + S+L+A A+L LD G W+ YI++ +K DI G A++DMY C +E
Sbjct: 296 TLGISPDAIILTSVLSACASLGTLDFGTWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIE 355
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A Q++ F+W ++ GLA+ G +AL++F M+ + +KP+E+ ++ +L+AC
Sbjct: 356 MALKIFYSMSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACC 415
Query: 177 H 177
H
Sbjct: 416 H 416
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 12/173 (6%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y G A + FD+M RD V W ++I G+++ F EA+++F M M
Sbjct: 145 SLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFDEAISVFFRMDVEPSMT 204
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--- 127
T+VS+L A A L G+ I I++ + K ++ GNA++DMY +A+
Sbjct: 205 ---TLVSVLAACARNGDLCTGKGIHGVIER-RFKVNLVLGNAMLDMYVKNGCFYEAKNIF 260
Query: 128 -----KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+D SWT MI GL S + ++L++FS M I PD + VLSAC
Sbjct: 261 DELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAIILTSVLSAC 313
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 11/147 (7%)
Query: 40 WTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYID 99
+ ++I+GY+ + A+++++ M + D FT +L A +N G + +
Sbjct: 73 FNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHGVVV 132
Query: 100 KNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTMIVGLAISGNGDKALD 151
K + D + N+LI Y C D A K D SW ++I G +G+ D+A+
Sbjct: 133 KLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFDEAIS 192
Query: 152 MFSQMLRASIKPDEVAYVGVLSACTHN 178
+F R ++P V VL+AC N
Sbjct: 193 VF---FRMDVEPSMTTLVSVLAACARN 216
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ TAIV Y G +++A + F M +R+ W A++ G EAL LF+ M
Sbjct: 337 DIHIGTAIVDMYAKCGCIEMALKIFYSMSQRNTFTWNALLCGLAMHGLVHEALNLFEVMI 396
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKN---DIFAGNALIDMYCICA 121
S + +E T ++ILTA + +D G K + + +K+ N + +ID++C
Sbjct: 397 ISGVKPNEITFLAILTACCHCGLVDEGR--KYFDNMSKLYNLLPKLEHYGCMIDLFCRAG 454
Query: 122 DVEKA 126
+E+A
Sbjct: 455 LLEEA 459
>gi|77553484|gb|ABA96280.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125578286|gb|EAZ19432.1| hypothetical protein OsJ_34992 [Oryza sativa Japonica Group]
Length = 518
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 108/186 (58%), Gaps = 11/186 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ W A ++R + G +D A + F +MPERD V W ++I GY ++ ++ +AL +F
Sbjct: 204 MPVRNLSWWNAEIARNVRIGYMDEAARIFSEMPERDAVSWNSLISGYTKLGKYTQALGIF 263
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
QEMQ + I E T+V +L A A + LDLG I + + D GNALIDMY C
Sbjct: 264 QEMQENGIQPTELTLVLVLGACAKIGKLDLGTNIHRNLQNKGIVADGLVGNALIDMYAKC 323
Query: 121 ADVEKAQK--DKFS------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ A+K D+ S W MIVG ++ G +AL++F M I+P+ V ++GVL
Sbjct: 324 GMLDLAKKVFDRMSMRDITCWNAMIVGFSVHGCSREALELFDSM---KIEPNPVTFLGVL 380
Query: 173 SACTHN 178
+AC+H
Sbjct: 381 TACSHG 386
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 88/185 (47%), Gaps = 18/185 (9%)
Query: 1 MKNKDVIS----WTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREA 56
++NK +++ A++ Y G +D+A++ FD+M RD W AMI G+ REA
Sbjct: 301 LQNKGIVADGLVGNALIDMYAKCGMLDLAKKVFDRMSMRDITCWNAMIVGFSVHGCSREA 360
Query: 57 LTLFQEMQTSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALID 115
L LF M+ I + T + +LTA ++ ++ G ++ + I+ ++ D+ +ID
Sbjct: 361 LELFDSMK---IEPNPVTFLGVLTACSHGGLVNEGRKYFNSMIEDYRIVPDVKHYGCMID 417
Query: 116 MYCICADVEKAQ---KDKFS------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 166
M C +E+A K+ S W ++ + G+ D A MF LR I D
Sbjct: 418 MLCRYGKIEEAYLMIKENPSTASSVLWKMLLAACRVHGHIDLAY-MFFHELRELILTDNG 476
Query: 167 AYVGV 171
V +
Sbjct: 477 GLVTI 481
>gi|222628408|gb|EEE60540.1| hypothetical protein OsJ_13880 [Oryza sativa Japonica Group]
Length = 594
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 108/185 (58%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ K+++ T +V Y G+V+IA F+ MP +D V W+AMI GY ++ EAL LF
Sbjct: 231 VSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPMEALNLF 290
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+MQ S + DE T++S+++A AN+ AL+ I ++++ + + + GNALIDM+ C
Sbjct: 291 HDMQRSGVKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILPIGNALIDMFSKC 350
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ A QK+ +WT++I A+ G+G AL +F M I+P+ V ++G+L
Sbjct: 351 GSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLL 410
Query: 173 SACTH 177
AC H
Sbjct: 411 YACCH 415
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 100/206 (48%), Gaps = 39/206 (18%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G+V+ AR+ FD MP+RD V W M+D Y + + EAL LF M+ S ++
Sbjct: 108 TALVRAYAACGRVEDARRVFDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMKRSRVV 167
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-- 127
D+ I ++L+ A+ R L G+ I +Y+ + D AL++MY CAD+E A+
Sbjct: 168 PDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMYASCADMEMAEKL 227
Query: 128 -------------------------------------KDKFSWTTMIVGLAISGNGDKAL 150
KD SW+ MI G A S +AL
Sbjct: 228 YNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPMEAL 287
Query: 151 DMFSQMLRASIKPDEVAYVGVLSACT 176
++F M R+ +KPDE+ + V+SAC
Sbjct: 288 NLFHDMQRSGVKPDEITMLSVISACA 313
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 74 TIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ------ 127
+ S+L A A R+L + + D F G AL+ Y C VE A+
Sbjct: 71 ALPSLLRAIAFARSLGTAGAAHGLAFRVGAEVDGFVGTALVRAYAACGRVEDARRVFDGM 130
Query: 128 --KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+D +W M+ + N ++AL +F M R+ + PD+V VLS C H
Sbjct: 131 PDRDLVAWGVMLDCYCQARNYEEALLLFHSMKRSRVVPDQVIIATVLSTCAH 182
>gi|255571517|ref|XP_002526706.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534006|gb|EEF35728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 461
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 103/174 (59%), Gaps = 8/174 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T++VS Y G +D A + D +PE + V WTA+I GY+ V ++REA+ LF+ M + +
Sbjct: 153 TSLVSLYAKCGSIDDALKMLDLIPESNIVSWTAIISGYIGVGKYREAIDLFRRMLETGLR 212
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK---- 125
D FTIV +L+A + L GEWI YI +N + ++F +L+D+Y ++EK
Sbjct: 213 PDSFTIVQVLSACIQIGDLANGEWIDRYITENVMARNVFVTTSLVDLYAKHGNMEKARCL 272
Query: 126 ----AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
A++D SW+ MI G A +G ALD+F +ML A +KPD A VG L AC
Sbjct: 273 FDGMAERDIVSWSAMIQGYASNGLPKDALDLFFKMLNAGLKPDHYAMVGFLCAC 326
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 98/182 (53%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
++V T++V Y G ++ AR FD M ERD V W+AMI GY ++AL LF +M
Sbjct: 248 RNVFVTTSLVDLYAKHGNMEKARCLFDGMAERDIVSWSAMIQGYASNGLPKDALDLFFKM 307
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ + D + +V L A A L AL+LG+W +D+ + + G ALIDMY C +
Sbjct: 308 LNAGLKPDHYAMVGFLCACARLGALELGDWGSNLMDRTEFFTNHVLGTALIDMYAKCGSM 367
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
KA KD+ W I GLA++G+ A +F QM R I+PD +VG+L C
Sbjct: 368 AKAWEVFKGIKGKDRAVWNAAISGLAMNGHEKAAFGLFGQMERFGIQPDGNTFVGLLCGC 427
Query: 176 TH 177
TH
Sbjct: 428 TH 429
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 8/175 (4%)
Query: 9 WTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI 68
W+ I+ + R F+Q+ E D VL+ MI G + + F E++ + M+
Sbjct: 51 WSMIIRSSFDFNDTTYTRLIFNQIKEPDVVLYNTMIRGLVSSDCFTESIEFYYSMRKKGF 110
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
+ + FT ++ A A L LG + T + K ++F +L+ +Y C ++ A K
Sbjct: 111 LPNNFTFPFVIKACARLLDFQLGIMMHTLVVKLGFDCNLFVNTSLVSLYAKCGSIDDALK 170
Query: 129 --------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ SWT +I G G +A+D+F +ML ++PD V VLSAC
Sbjct: 171 MLDLIPESNIVSWTAIISGYIGVGKYREAIDLFRRMLETGLRPDSFTIVQVLSAC 225
Score = 35.4 bits (80), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 43/102 (42%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ Y G + A + F + +D +W A I G + A LF +M+ I
Sbjct: 355 TALIDMYAKCGSMAKAWEVFKGIKGKDRAVWNAAISGLAMNGHEKAAFGLFGQMERFGIQ 414
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGN 111
D T V +L + +D G + ++ ++ IF N
Sbjct: 415 PDGNTFVGLLCGCTHAGLVDEGRKYFHSMGRSLRQDHIFLFN 456
>gi|317106614|dbj|BAJ53121.1| JHL07K02.11 [Jatropha curcas]
Length = 514
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 111/189 (58%), Gaps = 15/189 (7%)
Query: 4 KDVISWTA-------IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREA 56
+ V SWT ++ ++ G+ +IA++ F +MP+RD V W +MI GY+R +F EA
Sbjct: 70 RQVFSWTVSLAGLNLVIDSFMRIGEYEIAKKVFCKMPDRDVVTWNSMIGGYVRNGKFEEA 129
Query: 57 LTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116
L FQ M +SN+ D+FT S++TA A L AL+ +W+ + + +++ + +ALIDM
Sbjct: 130 LRSFQAMLSSNVEPDKFTFASVITACARLGALNHAQWLHDLMVQKRIEVNFILSSALIDM 189
Query: 117 YCICADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
Y C +E A++ D W ++I GLA+ G A+ +FS+M ++ PD + +
Sbjct: 190 YSKCGRIETAKEVFESVERNDVSVWNSLINGLAVHGLALDAMMVFSKMEAENVLPDSLTF 249
Query: 169 VGVLSACTH 177
+G+L AC+H
Sbjct: 250 LGILKACSH 258
>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g08820
gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 685
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 110/181 (60%), Gaps = 8/181 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N DV + T+++S Y G+++ A + FD++P+R V WTA+ GY R REA+ LF++
Sbjct: 143 NHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKK 202
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M + D + IV +L+A ++ LD GEWI Y+++ +++ + F L+++Y C
Sbjct: 203 MVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGK 262
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+EKA +KD +W+TMI G A + + +++F QML+ ++KPD+ + VG LS+
Sbjct: 263 MEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSS 322
Query: 175 C 175
C
Sbjct: 323 C 323
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 97/176 (55%), Gaps = 8/176 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T +V+ Y G+++ AR FD M E+D V W+ MI GY + +E + LF +M N+
Sbjct: 251 TTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLK 310
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV------ 123
D+F+IV L++ A+L ALDLGEW + ID+++ ++F NALIDMY C +
Sbjct: 311 PDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEV 370
Query: 124 --EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
E +KD I GLA +G+ + +F Q + I PD ++G+L C H
Sbjct: 371 FKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVH 426
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ D ++ R + Q + F + L+ ++I+G++ + F E L LF
Sbjct: 42 HHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLS 101
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
++ + FT +L A + LG + + + K +D+ A +L+ +Y
Sbjct: 102 IRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGR 161
Query: 123 VEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+ A K +WT + G SG +A+D+F +M+ +KPD V VLSA
Sbjct: 162 LNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSA 221
Query: 175 CTH 177
C H
Sbjct: 222 CVH 224
>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
Length = 694
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 105/180 (58%), Gaps = 12/180 (6%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G+V+ A + FD + +D + W +I GY +N ++EAL LFQEM S
Sbjct: 262 ALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETP 321
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYID---KNKVKNDIFAGNALIDMYCICADVEKAQ 127
++ T++SIL A A+L A+D+G WI YI+ K V N +LIDMY C D++ AQ
Sbjct: 322 NDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQ 381
Query: 128 ---------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+ +W MI G A+ G + A D+FS+M I+PD++ +VG+LSAC+H+
Sbjct: 382 QVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHS 441
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 114/184 (61%), Gaps = 9/184 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++DV+S+TA+++ Y++RG ++ A++ FD++P +D V W AMI GY+ ++EAL LF+E
Sbjct: 152 HRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKE 211
Query: 63 -MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
M +N+ DE T+V++++A A +++LG + ++I+ + +++ NALID+Y
Sbjct: 212 MMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFG 271
Query: 122 DVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+VE A KD SW T+I G +AL +F +MLR+ P++V + +L
Sbjct: 272 EVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILP 331
Query: 174 ACTH 177
AC H
Sbjct: 332 ACAH 335
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 79/194 (40%), Gaps = 40/194 (20%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A FD + E + ++W M G+ + AL L+ M + ++ D +T +L + A
Sbjct: 42 AISVFDTIQEPNLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAK 101
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK---------------- 128
+ G+ I ++ K DI+ +LI MY +E A+K
Sbjct: 102 SKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTAL 161
Query: 129 -----------------------DKFSWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPD 164
D SW MI G +GN +AL++F +M+ +++PD
Sbjct: 162 IAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPD 221
Query: 165 EVAYVGVLSACTHN 178
E V V+SAC +
Sbjct: 222 ESTMVTVVSACAQS 235
>gi|125548143|gb|EAY93965.1| hypothetical protein OsI_15743 [Oryza sativa Indica Group]
gi|125590256|gb|EAZ30606.1| hypothetical protein OsJ_14659 [Oryza sativa Japonica Group]
Length = 328
Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 104/185 (56%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ DV+S A+V Y+ G++ +A + F+ MPERD V W ++ G + R +A+ LF
Sbjct: 1 MRAPDVVSHNALVHGYVKAGRLGLAVRVFEGMPERDAVSWGTVVAGCAKAGRLEKAVRLF 60
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M+ D+ + ++L+ A L ALD G+ + Y+ + + + +++ ++D+Y C
Sbjct: 61 DRMRREGYRPDDVALAAVLSCCAQLGALDKGQEVHEYVRRTRPRPNVYLCTGIVDLYAKC 120
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VE A +K+ F+W +IVGLA+ G+G ALD F +ML +PD ++GVL
Sbjct: 121 GRVEVAREVFDACPEKNVFTWNALIVGLAMHGHGTVALDYFDRMLVEGFRPDGTTFLGVL 180
Query: 173 SACTH 177
C+H
Sbjct: 181 IGCSH 185
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 69/183 (37%), Gaps = 14/183 (7%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
+V T IV Y G+V++AR+ FD PE++ W A+I G AL F
Sbjct: 103 PRPNVYLCTGIVDLYAKCGRVEVAREVFDACPEKNVFTWNALIVGLAMHGHGTVALDYFD 162
Query: 62 EMQTSNIMGDEFTIVSIL----------TARANLRALDLGEWIKTYIDKNKVKNDIFAGN 111
M D T + +L TAR + + + D+
Sbjct: 163 RMLVEGFRPDGTTFLGVLIGCSHAGLVDTARRIFYEMQHNHGVPRELKHYGCMADLLGRA 222
Query: 112 ALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
LID + D + W ++ G + GN + ++ ++ L + PD+ GV
Sbjct: 223 GLIDEAMEMISSMPMEADTYVWGGILAGCRMHGNNVEFAEVAARRL-LELNPDD---GGV 278
Query: 172 LSA 174
SA
Sbjct: 279 YSA 281
>gi|242077724|ref|XP_002448798.1| hypothetical protein SORBIDRAFT_06g033370 [Sorghum bicolor]
gi|241939981|gb|EES13126.1| hypothetical protein SORBIDRAFT_06g033370 [Sorghum bicolor]
Length = 577
Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats.
Identities = 69/185 (37%), Positives = 97/185 (52%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+VISWT ++ + G R FD+MPER+ V W ++ Y R RF +AL +F
Sbjct: 239 MPVKNVISWTTMIRALSDAGDFAGMRGLFDRMPERNLVSWNCILSSYTRHGRFWQALQMF 298
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M + D FT+VS+L+A NLR L LG WI + ++ G AL++MY +C
Sbjct: 299 PRMLLEGLNPDSFTVVSVLSACENLRKLRLGRWIHANLVTPALQVHAEVGTALVEMYAMC 358
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
DV +A KD FSW MI LA+ D AL +F M + P+ ++GVL
Sbjct: 359 GDVARAFVVFLKMYSKDVFSWNVMIRALAVHRRADDALRLFGVMRKQGFGPNHFTFMGVL 418
Query: 173 SACTH 177
AC +
Sbjct: 419 LACRY 423
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 68/166 (40%), Gaps = 35/166 (21%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
+VS Y+ G V AR+ FD M RD V W AM+ Y+R A LF M N
Sbjct: 188 MVSVYVRAGDVTSAREVFDAMETRDVVSWNAMLTAYVRTADIVAAKELFAAMPVKN---- 243
Query: 72 EFTIVSILTARANLRAL-DLGEWIKTYIDKNKVKNDIFAG-NALIDMYCICADVEKAQKD 129
+++ +RAL D G+ FAG L D +++
Sbjct: 244 ------VISWTTMIRALSDAGD---------------FAGMRGLFD--------RMPERN 274
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
SW ++ G +AL MF +ML + PD V VLSAC
Sbjct: 275 LVSWNCILSSYTRHGRFWQALQMFPRMLLEGLNPDSFTVVSVLSAC 320
>gi|414879049|tpg|DAA56180.1| TPA: hypothetical protein ZEAMMB73_301223 [Zea mays]
Length = 534
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 108/185 (58%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D S ++ Y G V AR+ FD+MP +D V TAMI+GY + R + AL LF
Sbjct: 206 MPTRDTASSMVLIVGYCKCGLVQNARELFDKMPTKDLVARTAMINGYAQTGRPKVALALF 265
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++++ + I D T+V +++A + + + +L W+ Y+D+ K++ + AL+DM+ C
Sbjct: 266 RDLEAAGIEPDGATMVGVISAVSQIGSTELAGWVGAYVDRKKIERNEKVLTALVDMHAKC 325
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++E+A + D + +T +I GLA G+ + AL +F +M IKP + +VGVL
Sbjct: 326 GNIEQALSAFREIPRPDAYPYTALISGLATHGHENLALSVFERMRAEDIKPHPITFVGVL 385
Query: 173 SACTH 177
+AC+H
Sbjct: 386 TACSH 390
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 66/184 (35%), Gaps = 47/184 (25%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ D +S+ +++ + V A F MP R V W AM+ Y+ A +F
Sbjct: 144 IPAPDAVSFNSLLCAHARNASVRPAESLFAAMPTRTQVSWNAMVVLYVSAGDLAAACRVF 203
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM T D + LI YC C
Sbjct: 204 DEMPT---------------------------------------RDTASSMVLIVGYCKC 224
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
V+ A+ KD + T MI G A +G AL +F + A I+PD VGV+
Sbjct: 225 GLVQNARELFDKMPTKDLVARTAMINGYAQTGRPKVALALFRDLEAAGIEPDGATMVGVI 284
Query: 173 SACT 176
SA +
Sbjct: 285 SAVS 288
>gi|147816693|emb|CAN62262.1| hypothetical protein VITISV_013985 [Vitis vinifera]
Length = 531
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 102/186 (54%), Gaps = 11/186 (5%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++V++ +++S Y+++G V+ AR FD+M +D W+ MI GY + EAL +F+E
Sbjct: 186 QENVLAINSMISGYMSQGHVEKARAMFDKMGAKDAATWSGMITGYTKNGMHEEALVMFRE 245
Query: 63 M---QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
M S + +E +VS L+A A L ALD G WI YI + K I G L+DMY
Sbjct: 246 MMMVSNSGVQPNESALVSSLSATACLGALDQGRWIHAYIRRIGAKISITLGTGLVDMYAK 305
Query: 120 CADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C + E Q+D +W M+ G A+ G K +F +M+ +P+EV +V +
Sbjct: 306 CGSIHCSYKLFREMQQRDVVTWGVMMSGFAMHGQARKCFQLFDEMVAGGTRPNEVIFVAI 365
Query: 172 LSACTH 177
LSAC+H
Sbjct: 366 LSACSH 371
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 42/205 (20%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
++ Y++ Q+ A F+++P D + AMI G N ++L L+ ++ + D
Sbjct: 63 LLDSYVSMSQIYYALLVFNRIPSPDVFAYNAMIRGLTLGNCPYDSLLLYNKLLLGGLTPD 122
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY----CI-CAD---- 122
+T +L ++L+A+ G+ + + K V D +LI MY C+ CA+
Sbjct: 123 NYTYTFVLKVCSHLKAIFEGKQVHCQVIKAGVAPDTHIHTSLIHMYAKSDCLACAEGVLA 182
Query: 123 ----------------------VEKAQ--------KDKFSWTTMIVGLAISGNGDKALDM 152
VEKA+ KD +W+ MI G +G ++AL M
Sbjct: 183 ECSQENVLAINSMISGYMSQGHVEKARAMFDKMGAKDAATWSGMITGYTKNGMHEEALVM 242
Query: 153 FSQMLRAS---IKPDEVAYVGVLSA 174
F +M+ S ++P+E A V LSA
Sbjct: 243 FREMMMVSNSGVQPNESALVSSLSA 267
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T +V Y G + + + F +M +RD V W M+ G+ + R+ LF EM
Sbjct: 297 TGLVDMYAKCGSIHCSYKLFREMQQRDVVTWGVMMSGFAMHGQARKCFQLFDEMVAGGTR 356
Query: 70 GDEFTIVSILTARANLRALDLGE 92
+E V+IL+A ++ L+LG
Sbjct: 357 PNEVIFVAILSACSHAGYLELGH 379
>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 106/178 (59%), Gaps = 10/178 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+A++ Y G + AR+ FD M ++D V W AMI GY + EA+ LFQ+M+ S+
Sbjct: 267 SALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTA 326
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
D+ T++ IL+A A++ ALDLG+ ++ Y + ++D++ G AL+DMY C ++ A
Sbjct: 327 PDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRV 386
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLR--ASIKPDEVAYVGVLSACTH 177
+K++ SW MI LA G +AL +F M+ ++ P+++ +VGVLSAC H
Sbjct: 387 FYGMPKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVH 444
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 103/174 (59%), Gaps = 8/174 (4%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
++++ Y G++ AR+ FD++ ++D V W +MI GY ++ EA+ LF+EM +
Sbjct: 167 SLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQP 226
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA---- 126
+E ++VS+L A L L LG W++ ++ +NK+ + F G+ALI MY C D+ A
Sbjct: 227 NEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIF 286
Query: 127 ----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+KDK +W MI G A +G ++A+ +F M +S PD++ +G+LSAC
Sbjct: 287 DSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACA 340
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 8/133 (6%)
Query: 51 NRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAG 110
N+ AL + M+ + + T + A +NL A++ G + + + D
Sbjct: 106 NKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVS 165
Query: 111 NALIDMYCICADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIK 162
++LI MY C + E +QKD SW +MI G + + +A+ +F +M+ A +
Sbjct: 166 HSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQ 225
Query: 163 PDEVAYVGVLSAC 175
P+E++ V VL AC
Sbjct: 226 PNEMSLVSVLGAC 238
>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 750
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 101/185 (54%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ SW ++S Y G + AR FD MP+RD V W A+I GY + + EA+ +
Sbjct: 307 MPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNML 366
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM+ + T L+A A++ AL+LG+ + + + + GNAL+ MYC C
Sbjct: 367 VEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKC 426
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+++A KD SW TM+ G A G G +AL +F M+ A +KPDE+ VGVL
Sbjct: 427 GCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVL 486
Query: 173 SACTH 177
SAC+H
Sbjct: 487 SACSH 491
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 26/169 (15%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+SW A++S Y+ G VD AR FD+MP ++ + W ++ Y+R R EA LF
Sbjct: 121 MPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLF 180
Query: 61 Q-----EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID 115
+ E+ + N + + ++L + R L D+ V+ D+ + N +I
Sbjct: 181 ESKSDWELISCNCLMGGYVKRNML---GDARQL---------FDQIPVR-DLISWNTMIS 227
Query: 116 MYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQM 156
Y D+ +A+ +D F+WT M+ G D+A +F +M
Sbjct: 228 GYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEM 276
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 76/181 (41%), Gaps = 47/181 (25%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+DV +WTA+V Y+ G +D AR+ FD+MP++ + + MI GY + R LF+EM
Sbjct: 248 RDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEM 307
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
NI G W N +I YC D+
Sbjct: 308 PFPNI----------------------GSW-----------------NIMISGYCQNGDL 328
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+A Q+D SW +I G A +G ++A++M +M R + + LSAC
Sbjct: 329 AQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSAC 388
Query: 176 T 176
Sbjct: 389 A 389
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 13/166 (7%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
K + A+V Y G +D A F + +D V W M+ GY R R+ALT+F+ M
Sbjct: 411 KGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESM 470
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
T+ + DE T+V +L+A ++ D G E+ + + + +ID+
Sbjct: 471 ITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGC 530
Query: 123 VEKAQ---------KDKFSWTTMIVGLAISGN---GDKALDMFSQM 156
+E+AQ D +W ++ I GN G++A +M +M
Sbjct: 531 LEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQAAEMVFKM 576
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 35/173 (20%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
++ + T +S ++ G D+A FD MP R+ V + AMI GYLR +F A LF
Sbjct: 29 EDPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFD 88
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
+M ++ F+ +LT A R L L D
Sbjct: 89 KMPHKDL----FSWNLMLTGYARNRRLR-------------------DARMLFD------ 119
Query: 122 DVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+KD SW M+ G SG+ D+A D+F +M + +++ G+L+A
Sbjct: 120 --SMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHK----NSISWNGLLAA 166
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 76/194 (39%), Gaps = 47/194 (24%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ +S+ A++S Y+ + +AR FD+MP +D W M+ GY R R R+A LF
Sbjct: 59 MPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLF 118
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M +++ + + + A D+ D+ KN I + N L+ Y
Sbjct: 119 DSMPEKDVVSWNAMLSGYVRSGHVDEARDV-------FDRMPHKNSI-SWNGLLAAYVRS 170
Query: 121 ADVEKAQ---------------------------------------KDKFSWTTMIVGLA 141
+E+A+ +D SW TMI G A
Sbjct: 171 GRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYA 230
Query: 142 ISGNGDKALDMFSQ 155
G+ +A +F +
Sbjct: 231 QDGDLSQARRLFEE 244
>gi|357116134|ref|XP_003559839.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Brachypodium distachyon]
Length = 601
Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats.
Identities = 69/184 (37%), Positives = 103/184 (55%), Gaps = 8/184 (4%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
K KD ISW +++ + N G +D+A + F P RD + W ++ GY R F + LF
Sbjct: 282 KEKDDISWNTMIAGFANDGMLDLASKFFFDAPCRDLISWNTLLAGYGRCREFAAVMELFN 341
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
+M +S + D+ T V++++A + AL+LG+ + ++ K D F + L+DMYC C
Sbjct: 342 DMLSSRVRPDKVTAVTLISAAVSKGALNLGKSVHGWVLKEHGTQDAFLASTLVDMYCKCG 401
Query: 122 DV-------EKA-QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+V EKA KD WT MI GLA G+G +ALD+F M + P+ V V VLS
Sbjct: 402 NVKLAYAVFEKALDKDVTLWTAMISGLAFHGHGTEALDLFWNMQNEGVAPNGVTLVTVLS 461
Query: 174 ACTH 177
AC+H
Sbjct: 462 ACSH 465
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 52/205 (25%), Positives = 89/205 (43%), Gaps = 41/205 (20%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y++ G + A F +P D V M+ GY++ AL LF++M + I
Sbjct: 157 SLIKMYLDAGDAETAEAMFQSVPVPDVVSCNIMLSGYVKGGCVVNALQLFRDMASREIGV 216
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKND--IFAGNALIDMYCICADV----- 123
D++ V++L+ L+ LG + + + D + NAL+DMY C ++
Sbjct: 217 DQYAAVALLSCCGRLKNALLGRSVHGVVVRRMDIKDRGLILSNALLDMYAKCGEMNTAMR 276
Query: 124 ---EKAQKDKFSWTTMIVGLAISGNGDKA------------------------------- 149
E +KD SW TMI G A G D A
Sbjct: 277 VFGEAKEKDDISWNTMIAGFANDGMLDLASKFFFDAPCRDLISWNTLLAGYGRCREFAAV 336
Query: 150 LDMFSQMLRASIKPDEVAYVGVLSA 174
+++F+ ML + ++PD+V V ++SA
Sbjct: 337 MELFNDMLSSRVRPDKVTAVTLISA 361
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 45/88 (51%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+D + +V Y G V +A F++ ++D LWTAMI G EAL LF M
Sbjct: 385 QDAFLASTLVDMYCKCGNVKLAYAVFEKALDKDVTLWTAMISGLAFHGHGTEALDLFWNM 444
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLG 91
Q + + T+V++L+A ++ LD G
Sbjct: 445 QNEGVAPNGVTLVTVLSACSHAGLLDEG 472
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 11/127 (8%)
Query: 57 LTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116
+ L++ M S+ DE T +S+L + + +G+ + ++ N + + ++ N+LI M
Sbjct: 105 VALYKSMLASSASPDEKTFLSLLKS---VGCASVGKQVHAHVLVNGLHSRVYLRNSLIKM 161
Query: 117 YCICADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
Y D E A+ D S M+ G G AL +F M I D+ A
Sbjct: 162 YLDAGDAETAEAMFQSVPVPDVVSCNIMLSGYVKGGCVVNALQLFRDMASREIGVDQYAA 221
Query: 169 VGVLSAC 175
V +LS C
Sbjct: 222 VALLSCC 228
>gi|356513796|ref|XP_003525595.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 595
Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 113/219 (51%), Gaps = 42/219 (19%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDG-------------- 46
M ++DV+SW +++ Y+ G +D A + F+ +PERD V W MIDG
Sbjct: 199 MPDRDVLSWNCLIAGYVGVGDLDAANELFETIPERDAVSWNCMIDGCARVGNVSLAVKFF 258
Query: 47 -------------------YLRVNRFREALTLFQEM-QTSNIMGDEFTIVSILTARANLR 86
+ RV + E L LF +M + + +E T+VS+LTA ANL
Sbjct: 259 DRMPAAVRNVVSWNSVLALHARVKNYGECLMLFGKMVEGREAVPNEATLVSVLTACANLG 318
Query: 87 ALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIV 138
L +G W+ ++I N +K D+ L+ MY C ++ A+ + SW +MI+
Sbjct: 319 KLSMGMWVHSFIRSNNIKPDVLLLTCLLTMYAKCGAMDLAKGVFDEMPVRSVVSWNSMIM 378
Query: 139 GLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
G + G GDKAL++F +M +A +P++ ++ VLSACTH
Sbjct: 379 GYGLHGIGDKALELFLEMEKAGQQPNDATFISVLSACTH 417
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
DV+ T +++ Y G +D+A+ FD+MP R V W +MI GY +AL LF EM
Sbjct: 337 PDVLLLTCLLTMYAKCGAMDLAKGVFDEMPVRSVVSWNSMIMGYGLHGIGDKALELFLEM 396
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK-NKVKNDIFAGNALIDMYCICAD 122
+ + ++ T +S+L+A + + G W + + K++ + ++D+
Sbjct: 397 EKAGQQPNDATFISVLSACTHAGMVMEGWWYFDLMQRVYKIEPKVEHYGCMVDLLARAGL 456
Query: 123 VEKAQK 128
VE +++
Sbjct: 457 VENSEE 462
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 71/173 (41%), Gaps = 30/173 (17%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D++S+ +++ Y+ G++ AR+ F++MP+RD + W +I GY+ V A LF+ +
Sbjct: 172 DLVSYNSMIDGYVKNGEIGAARKVFNEMPDRDVLSWNCLIAGYVGVGDLDAANELFETIP 231
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
D W ID ++ D +
Sbjct: 232 ER----------------------DAVSW-NCMIDGCARVGNVSLAVKFFD------RMP 262
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVAYVGVLSACT 176
A ++ SW +++ A N + L +F +M+ P+E V VL+AC
Sbjct: 263 AAVRNVVSWNSVLALHARVKNYGECLMLFGKMVEGREAVPNEATLVSVLTACA 315
>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats.
Identities = 64/174 (36%), Positives = 105/174 (60%), Gaps = 8/174 (4%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
+++ Y VD A++ FD++ E V + A+I GY R +R EAL+LF+++Q + +
Sbjct: 168 LINMYAGCNDVDGAQRVFDEILEPCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPN 227
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA----- 126
+ T++S+L++ A L ALDLG+WI Y+ KN + + ALIDMY C ++ A
Sbjct: 228 DVTVLSVLSSCALLGALDLGKWIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFE 287
Query: 127 ---QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+D +W+ MIV A+ G G + MF +M RA ++PDE+ ++G+L AC+H
Sbjct: 288 SMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSH 341
Score = 85.5 bits (210), Expect = 8e-15, Method: Composition-based stats.
Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 8/164 (4%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
+D A Q F+ +P+ D VL+ +M GY R N +A++LF + N++ D++T S+L
Sbjct: 75 ASMDYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLL 134
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--DKF------ 131
A +A G+ + K + + + LI+MY C DV+ AQ+ D+
Sbjct: 135 KACVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVV 194
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
S+ +I G A S ++AL +F Q+ +KP++V + VLS+C
Sbjct: 195 SYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSC 238
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ Y G +D A F+ M RD W+AMI Y + ++ +++F+EM + +
Sbjct: 267 TALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEEMARAKVQ 326
Query: 70 GDEFTIVSILTARANLRALDLG 91
DE T + +L A ++ +D G
Sbjct: 327 PDEITFLGLLYACSHTGLVDEG 348
>gi|326498517|dbj|BAJ98686.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 647
Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats.
Identities = 69/182 (37%), Positives = 107/182 (58%), Gaps = 9/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D SW ++++ Y+ G V+ A F MP++D V W+ MI G ++ N+ ALT+F M+
Sbjct: 331 DQFSWNSMIAGYLKNGHVENAMTLFSAMPDKDNVSWSTMISGCVQNNQSSHALTVFDNMR 390
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ DE TIVS+++A NL AL+ G+ + Y+ +NK + G +LIDMY C +E
Sbjct: 391 AQGVRPDEVTIVSVISACTNLSALEKGKSVHDYVRQNKCYITLVLGTSLIDMYMKCGYLE 450
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIK-PDEVAYVGVLSAC 175
A +K W +IVGLA++G K+L++FS+M +S P+E+ + GVLSAC
Sbjct: 451 AAMDVFNIMEEKGAPCWNAVIVGLAMNGLVTKSLEIFSEMEASSTAIPNEITFTGVLSAC 510
Query: 176 TH 177
H
Sbjct: 511 RH 512
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 65/216 (30%), Positives = 101/216 (46%), Gaps = 39/216 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ + +++VS + RG V+ AR FD+ RD WTAMI + R + F EAL +F
Sbjct: 195 MPKRNATAVSSMVSLFGRRGMVEEARGVFDEAECRDIFTWTAMISCFERNDMFAEALHMF 254
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M+ DE +VS++ A A + GE + + + + + N LI MY C
Sbjct: 255 SCMRREMWPVDEALMVSVVAACAQSEVIRNGELCHGLVIRAGLCSLLNIQNVLIHMYSCC 314
Query: 121 ADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQM---------------- 156
DV A++ D+FSW +MI G +G+ + A+ +FS M
Sbjct: 315 LDVVAARRLFDSGDCLDQFSWNSMIAGYLKNGHVENAMTLFSAMPDKDNVSWSTMISGCV 374
Query: 157 --------------LRAS-IKPDEVAYVGVLSACTH 177
+RA ++PDEV V V+SACT+
Sbjct: 375 QNNQSSHALTVFDNMRAQGVRPDEVTIVSVISACTN 410
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK-- 128
D +T + A A R + G ++++ ++ +D++ NAL+ MY +C + A++
Sbjct: 102 DTYTHPILAAACAARRDVSEGRQVQSHAIRHGFGDDLYLRNALMHMYSVCGCLWDARRVF 161
Query: 129 ------DKFSWTTMIVGLAISGNGDKALDMFSQM 156
D SW T++ +G+ D+A+ +F++M
Sbjct: 162 DAGPVWDAVSWNTILAAYVHAGDVDQAVGVFARM 195
Score = 41.6 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 38/154 (24%), Positives = 57/154 (37%), Gaps = 31/154 (20%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
AR+ FD P D V W ++ Y+ +A+ +F M N T VS + +
Sbjct: 157 ARRVFDAGPVWDAVSWNTILAAYVHAGDVDQAVGVFARMPKRNA-----TAVSSMVSLFG 211
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISG 144
R + + + D E +D F+WT MI +
Sbjct: 212 RRGM------------------VEEARGVFD--------EAECRDIFTWTAMISCFERND 245
Query: 145 NGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+AL MFS M R DE V V++AC +
Sbjct: 246 MFAEALHMFSCMRREMWPVDEALMVSVVAACAQS 279
>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Glycine max]
Length = 638
Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 104/182 (57%), Gaps = 9/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM- 63
+V+ +V Y G + AR+ FD+M +R V W MI GY + ++EA+ +F M
Sbjct: 198 NVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMM 257
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
Q +++ + T+VS+L A + L L+LG+W+ Y +KNK++ D G+AL+DMY C +
Sbjct: 258 QMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSI 317
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
EKA Q + +W +I GLA+ G + + S+M + I P +V Y+ +LSAC
Sbjct: 318 EKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSAC 377
Query: 176 TH 177
+H
Sbjct: 378 SH 379
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 83/210 (39%), Gaps = 58/210 (27%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRV-NRFREALTLF-QEMQTSNIMGDEFTIVSILTAR 82
A FDQ+PER+ W +I +R +AL +F Q + + + ++FT S+L A
Sbjct: 68 ALSVFDQLPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKAC 127
Query: 83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE------------------ 124
A + L G+ + + K + +D F L+ MY +C +E
Sbjct: 128 AVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRN 187
Query: 125 ----------------------------KAQKDKF---------SWTTMIVGLAISGNGD 147
KA ++ F SW MI G A +G
Sbjct: 188 LVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYK 247
Query: 148 KALDMFSQMLR-ASIKPDEVAYVGVLSACT 176
+A+++F +M++ + P+ V V VL A +
Sbjct: 248 EAIEIFHRMMQMGDVLPNRVTLVSVLPAIS 277
Score = 43.1 bits (100), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 80/186 (43%), Gaps = 20/186 (10%)
Query: 2 KNK---DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALT 58
KNK D + +A+V Y G ++ A Q F+++P+ + + W A+I G + +
Sbjct: 294 KNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFN 353
Query: 59 LFQEMQTSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMY 117
M+ I + T ++IL+A ++ +D G + ++ +K I ++D+
Sbjct: 354 YLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLL 413
Query: 118 CICADVEKAQK---------DKFSWTTMIVGLAISGN---GDKALDMFSQMLRASIKPDE 165
+E+A++ D W ++ + N G +A ++ QM D
Sbjct: 414 GRAGYLEEAEELILNMPMKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQM----APHDS 469
Query: 166 VAYVGV 171
AYV +
Sbjct: 470 GAYVAL 475
>gi|125552488|gb|EAY98197.1| hypothetical protein OsI_20110 [Oryza sativa Indica Group]
Length = 551
Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats.
Identities = 66/186 (35%), Positives = 109/186 (58%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ +DV+SW ++S + GQ+ A F+ MP++ V WTAM+ GY V + A+ F
Sbjct: 180 MRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAF 239
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ MQT D+ +IV++L A A L AL+LG WI Y ++ + NAL++MY C
Sbjct: 240 RSMQTEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKC 299
Query: 121 ADVEK--------AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGV 171
+++ A KD SW+T+I GLA G +A+ +F++M + ++P+ + +VG+
Sbjct: 300 GCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGL 359
Query: 172 LSACTH 177
LSAC++
Sbjct: 360 LSACSY 365
Score = 60.1 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 50/203 (24%), Positives = 82/203 (40%), Gaps = 46/203 (22%)
Query: 21 QVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-------QTSNIMGDEF 73
+V A + F Q+ + + L AMI Y + ++ R+A+ ++ M + GD F
Sbjct: 61 RVTHAARVFAQVRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRF 120
Query: 74 TIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK----- 128
T +L A AL+LG+ + T++ ++ + N+LI+MY D+ A K
Sbjct: 121 TYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEM 180
Query: 129 --------------------------------DK--FSWTTMIVGLAISGNGDKALDMFS 154
DK +WT M+ G G+ A+D F
Sbjct: 181 RERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFR 240
Query: 155 QMLRASIKPDEVAYVGVLSACTH 177
M +PD+V+ V VL AC
Sbjct: 241 SMQTEGFEPDDVSIVAVLPACAQ 263
>gi|255556669|ref|XP_002519368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541435|gb|EEF42985.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 524
Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 108/184 (58%), Gaps = 9/184 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+++ +W A++S Y G + AR FD+MPERD V W MI GY + + A+ LF+E
Sbjct: 251 SRNSSTWNAMISAYTRVGDLLSARDLFDKMPERDAVSWNTMISGYAQNGQSAMAIELFKE 310
Query: 63 M-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
M + DE T+VSI++A +L AL+LG WI +I + +++ I NALI MY C
Sbjct: 311 MIDAKDSQPDEVTMVSIISACGHLGALELGTWIVNFISEYRIELTISGYNALIFMYSKCG 370
Query: 122 DVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
++++AQ +D S+ ++I G A G G++A+ + M + PD V Y+GVL+
Sbjct: 371 NMKEAQRIFQEMETRDVVSYNSLIGGFAAHGEGNEAIKLLLSMKEEGVDPDHVTYIGVLT 430
Query: 174 ACTH 177
AC+H
Sbjct: 431 ACSH 434
Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 101/215 (46%), Gaps = 41/215 (19%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
++VI+WTA+V+ + ++D AR+ FD MP ++ V W A+I GY + EAL LF M
Sbjct: 119 RNVITWTAMVTGFSKIKELDSARKYFDDMPVKNIVSWNAIISGYAQNGFVEEALKLFNHM 178
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ +E T +++++ ++ E +DK K+K + F AL+DM C ++
Sbjct: 179 IRLGVQPNETTWATVISSCSSCGDPCRAESFVKLLDKRKIKMNYFVKTALLDMNAKCGNL 238
Query: 124 EKA----------------------------------------QKDKFSWTTMIVGLAIS 143
E A ++D SW TMI G A +
Sbjct: 239 EAARGIFNELGVSRNSSTWNAMISAYTRVGDLLSARDLFDKMPERDAVSWNTMISGYAQN 298
Query: 144 GNGDKALDMFSQMLRAS-IKPDEVAYVGVLSACTH 177
G A+++F +M+ A +PDEV V ++SAC H
Sbjct: 299 GQSAMAIELFKEMIDAKDSQPDEVTMVSIISACGH 333
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 31/165 (18%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
I+ Y ++ AR+ FD+M ER W +MI GY + EA +LF N++
Sbjct: 65 ILDMYAKHSLIENARKLFDEMTERSLADWNSMICGYWKCGNETEACSLFSMTPERNVI-- 122
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKF 131
T +++T + ++ LD + Y D VKN +
Sbjct: 123 --TWTAMVTGFSKIKELDSA---RKYFDDMPVKNIV------------------------ 153
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
SW +I G A +G ++AL +F+ M+R ++P+E + V+S+C+
Sbjct: 154 SWNAIISGYAQNGFVEEALKLFNHMIRLGVQPNETTWATVISSCS 198
Score = 40.0 bits (92), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%)
Query: 6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT 65
+ + A++ Y G + A++ F +M RD V + ++I G+ EA+ L M+
Sbjct: 356 ISGYNALIFMYSKCGNMKEAQRIFQEMETRDVVSYNSLIGGFAAHGEGNEAIKLLLSMKE 415
Query: 66 SNIMGDEFTIVSILTARANLRALDLG 91
+ D T + +LTA ++ ++ G
Sbjct: 416 EGVDPDHVTYIGVLTACSHAGLVEEG 441
>gi|297724167|ref|NP_001174447.1| Os05g0439300 [Oryza sativa Japonica Group]
gi|46981301|gb|AAT07619.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
gi|215769333|dbj|BAH01562.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255676403|dbj|BAH93175.1| Os05g0439300 [Oryza sativa Japonica Group]
Length = 551
Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats.
Identities = 66/186 (35%), Positives = 109/186 (58%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ +DV+SW ++S + GQ+ A F+ MP++ V WTAM+ GY V + A+ F
Sbjct: 180 MRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAF 239
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ MQT D+ +IV++L A A L AL+LG WI Y ++ + NAL++MY C
Sbjct: 240 RSMQTEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKC 299
Query: 121 ADVEK--------AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGV 171
+++ A KD SW+T+I GLA G +A+ +F++M + ++P+ + +VG+
Sbjct: 300 GCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGL 359
Query: 172 LSACTH 177
LSAC++
Sbjct: 360 LSACSY 365
Score = 60.1 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 50/203 (24%), Positives = 82/203 (40%), Gaps = 46/203 (22%)
Query: 21 QVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-------QTSNIMGDEF 73
+V A + F Q+ + + L AMI Y + ++ R+A+ ++ M + GD F
Sbjct: 61 RVTHAARVFAQVRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRF 120
Query: 74 TIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK----- 128
T +L A AL+LG+ + T++ ++ + N+LI+MY D+ A K
Sbjct: 121 TYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEM 180
Query: 129 --------------------------------DK--FSWTTMIVGLAISGNGDKALDMFS 154
DK +WT M+ G G+ A+D F
Sbjct: 181 RERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFR 240
Query: 155 QMLRASIKPDEVAYVGVLSACTH 177
M +PD+V+ V VL AC
Sbjct: 241 SMQTEGFEPDDVSIVAVLPACAQ 263
>gi|357521772|ref|XP_003612377.1| Selenium binding protein-like protein [Medicago truncatula]
gi|355513712|gb|AES95335.1| Selenium binding protein-like protein [Medicago truncatula]
Length = 611
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 106/185 (57%), Gaps = 10/185 (5%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N +VI TAIV Y G +++AR+ F++MPER+ V W MI+ Y + R+ EAL LF
Sbjct: 247 NSNVILATAIVEMYAKCGWLNVARELFNKMPERNIVAWNCMINAYNQYERYNEALGLFFY 306
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M + D+ T +S+L+ A L LGE + Y+ K+ + DI AL+DMY +
Sbjct: 307 MLANGFCPDKATFLSVLSVCARRCVLALGETVHAYLLKSNMAKDIALATALLDMYAKNGE 366
Query: 123 VEKAQ---------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGVL 172
+ AQ KD WT+MI LAI G+G++AL +F M +S+ PD + Y+GVL
Sbjct: 367 LGSAQKIFNNSLEKKDVVMWTSMINALAIHGHGNEALSLFQIMQEDSSLVPDHITYIGVL 426
Query: 173 SACTH 177
AC+H
Sbjct: 427 FACSH 431
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 15/181 (8%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T +++ Y+ ++ + FD++P+ + V WT +I+GY+ ++ REAL +F+EM +
Sbjct: 146 TGLLNMYVECKNMESGLKVFDKIPKWNVVAWTCLINGYVINDQPREALEVFKEMGRWGVE 205
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGN-------ALIDMYCICAD 122
+E T+V+ L A A R +D G W+ + K +FA N A+++MY C
Sbjct: 206 ANEVTMVNALIACARCRDVDTGRWVHERVCKAGYDPFVFASNSNVILATAIVEMYAKCGW 265
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+ A +++ +W MI ++AL +F ML PD+ ++ VLS
Sbjct: 266 LNVARELFNKMPERNIVAWNCMINAYNQYERYNEALGLFFYMLANGFCPDKATFLSVLSV 325
Query: 175 C 175
C
Sbjct: 326 C 326
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 8/161 (4%)
Query: 23 DIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR 82
+ A F Q+ + ++ +MI GY + N +L L+++M + D FT +L A
Sbjct: 58 NYANLLFRQIHSPNVYIFNSMIKGYAKSNNPTMSLHLYKQMLQNGYSPDHFTFPFVLKAC 117
Query: 83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--DKF------SWT 134
+ + G+ + + I K+ + +++ L++MY C ++E K DK +WT
Sbjct: 118 SFIYDQVSGKCVHSCILKSGFEANVYVATGLLNMYVECKNMESGLKVFDKIPKWNVVAWT 177
Query: 135 TMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+I G I+ +AL++F +M R ++ +EV V L AC
Sbjct: 178 CLINGYVINDQPREALEVFKEMGRWGVEANEVTMVNALIAC 218
>gi|449507733|ref|XP_004163116.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 442
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 107/187 (57%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K++++W A++ Y G +++AR+ F+ MPE+D V W+++IDGY++ + EA+ LF
Sbjct: 174 MPRKNLVTWNAMLDGYAKCGDLNMAREVFNLMPEKDVVSWSSLIDGYVKGRVYGEAMALF 233
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M M +E T+VS L A A+L AL+ G + YI +N++ I +L+DMY C
Sbjct: 234 ERMSFDGPMANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKC 293
Query: 121 ADVEKA----------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
+ +A + D W +I GLA G +A+++F +M I PDE+ Y+
Sbjct: 294 GAIHEALTVFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLC 353
Query: 171 VLSACTH 177
+LS C H
Sbjct: 354 LLSCCAH 360
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 8/143 (5%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81
+D + + +P W +I + ++T+F +M + + D T ++ A
Sbjct: 63 LDYSYKLILNVPNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKA 122
Query: 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKFSW 133
+ L +LG + +I K+ + D F N+LI MY C D+ E +K+ +W
Sbjct: 123 TSKLLNQELGMAVHVHIVKSGHEIDKFIQNSLIHMYASCRDIASARKVFDEMPRKNLVTW 182
Query: 134 TTMIVGLAISGNGDKALDMFSQM 156
M+ G A G+ + A ++F+ M
Sbjct: 183 NAMLDGYAKCGDLNMAREVFNLM 205
>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
gi|219886289|gb|ACL53519.1| unknown [Zea mays]
Length = 537
Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats.
Identities = 65/184 (35%), Positives = 109/184 (59%), Gaps = 10/184 (5%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD++SW +++ Y G + AR+ FD P+RD V W AMI GY+R ++A+ LF++M
Sbjct: 210 KDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQM 269
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK--NKVKNDIFAGNALIDMYCICA 121
Q D T++S+L+A A+ LD G + ++ +++ GNALIDMY C
Sbjct: 270 QAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTTALGNALIDMYAKCG 329
Query: 122 DVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+ A K+ +W ++I GLA+ G+ +++ +F +ML+ ++KPDE+ +V VL+
Sbjct: 330 SMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGNVKPDEITFVAVLA 389
Query: 174 ACTH 177
AC+H
Sbjct: 390 ACSH 393
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 15/152 (9%)
Query: 19 RGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN-------IMGD 71
RG AR FD++P D ++ +I G + R+A++++ M + + D
Sbjct: 55 RGGTAHARLVFDRIPHPDRFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPD 114
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV-------- 123
+ T +L A A + A + G + ++ K ++D F NALI M+ D+
Sbjct: 115 KRTFPFVLRACAAMGAGETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALFD 174
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQ 155
+A++D +W+ MI G A G+ A ++F +
Sbjct: 175 GEAREDAVAWSAMISGFARRGDIGAARELFDE 206
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 45/179 (25%), Positives = 66/179 (36%), Gaps = 47/179 (26%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D A++ + G + A FD D V W+AMI G+ R A LF
Sbjct: 149 DAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAARELF---- 204
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
D++ VK D+ + N +I Y D+
Sbjct: 205 ----------------------------------DESPVK-DLVSWNVMITAYAKLGDMA 229
Query: 125 KAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
A+ +D SW MI G G+ +A+++F QM KPD V + +LSAC
Sbjct: 230 PARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLSLLSAC 288
Score = 41.2 bits (95), Expect = 0.17, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G + A + F M +++ W ++I G E++ +F++M N+
Sbjct: 320 ALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGNVKP 379
Query: 71 DEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDM 116
DE T V++L A ++ +D G E+ + +++ +I ++DM
Sbjct: 380 DEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGCMVDM 426
>gi|242038163|ref|XP_002466476.1| hypothetical protein SORBIDRAFT_01g008465 [Sorghum bicolor]
gi|241920330|gb|EER93474.1| hypothetical protein SORBIDRAFT_01g008465 [Sorghum bicolor]
Length = 599
Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats.
Identities = 69/182 (37%), Positives = 105/182 (57%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD ISW +VS + N G +D+A + F + P RD + W A++ GY R F E + LF +M
Sbjct: 291 KDGISWNTMVSGFANAGMLDLASRFFSEAPSRDLISWNALLAGYARYKGFNEVMKLFHDM 350
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
S + D+ T V++++ A +L+ + I ++ K D F +AL+DM+C C +V
Sbjct: 351 LASCVNPDKVTAVTLISVAAGKGSLNHAKSIHGWVVKQFGHQDAFLASALVDMHCKCGNV 410
Query: 124 -------EKA-QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
EKA KD WT MI GLA +G+G +AL++F +M +I P+ V + VLSAC
Sbjct: 411 KVAYYVFEKALDKDVTLWTAMISGLAFNGHGTEALELFWKMQTEAIAPNGVTLLAVLSAC 470
Query: 176 TH 177
+H
Sbjct: 471 SH 472
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 10/155 (6%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ YI+ G V+ A F D V M+ GY+ +AL F++M + I+
Sbjct: 164 SLIKMYIDAGDVETAELMFRSALVLDTVSCNIMLSGYVNEGCSLKALCFFRDMASRGIVA 223
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKND--IFAGNALIDMYCICADV----- 123
D +T V++LT L+ + LG + I + D + NAL+DMY C +
Sbjct: 224 DRYTAVALLTCCGRLKTVLLGRSVHGVIVRRMDAGDNWLILVNALLDMYAKCGRMNAAER 283
Query: 124 ---EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQ 155
E ++KD SW TM+ G A +G D A FS+
Sbjct: 284 VFGEASEKDGISWNTMVSGFANAGMLDLASRFFSE 318
Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++D +A+V + G V +A F++ ++D LWTAMI G EAL LF +
Sbjct: 391 HQDAFLASALVDMHCKCGNVKVAYYVFEKALDKDVTLWTAMISGLAFNGHGTEALELFWK 450
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLG 91
MQT I + T++++L+A ++ LD G
Sbjct: 451 MQTEAIAPNGVTLLAVLSACSHAGLLDEG 479
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 11/129 (8%)
Query: 55 EALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALI 114
+A +++ M S+++ DE T +++L + L A G + ++ + + ++ N+LI
Sbjct: 110 QAAAVYRSMLASSVLPDEQTFLALLRSVERLSA---GRQVHAHVVVSGFHSRVYLRNSLI 166
Query: 115 DMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 166
MY DVE A+ D S M+ G G KAL F M I D
Sbjct: 167 KMYIDAGDVETAELMFRSALVLDTVSCNIMLSGYVNEGCSLKALCFFRDMASRGIVADRY 226
Query: 167 AYVGVLSAC 175
V +L+ C
Sbjct: 227 TAVALLTCC 235
>gi|449440231|ref|XP_004137888.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
gi|449521725|ref|XP_004167880.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 521
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 106/187 (56%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + +SW +++RYI + AR+ F++MPERD V W ++I GY+ V ++ AL LF
Sbjct: 205 MPQTNAVSWNTLLARYIRLNNLVAARKVFEEMPERDVVSWNSIISGYVNVKDYKGALDLF 264
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M+ NI E T +SIL A A L AL++G+ I + + + + + GNA++DMY C
Sbjct: 265 HSMKQWNIRATEVTFISILGACAELGALEIGKKIHDSLKEKHYRIEGYLGNAIVDMYAKC 324
Query: 121 ADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLR--ASIKPDEVAYVG 170
++ E K W MI+GLA+ G+ ++AL+MF M KP+ + ++
Sbjct: 325 GELGLALEVFNEMEMKPVSCWNAMIMGLAVHGHCERALEMFDSMKAEDGDHKPNRITFIA 384
Query: 171 VLSACTH 177
+L AC+H
Sbjct: 385 LLIACSH 391
>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
Length = 537
Score = 132 bits (331), Expect = 8e-29, Method: Composition-based stats.
Identities = 65/184 (35%), Positives = 109/184 (59%), Gaps = 10/184 (5%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD++SW +++ Y G + AR+ FD P+RD V W AMI GY+R ++A+ LF++M
Sbjct: 210 KDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQM 269
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK--NKVKNDIFAGNALIDMYCICA 121
Q D T++S+L+A A+ LD G + ++ +++ GNALIDMY C
Sbjct: 270 QAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTTALGNALIDMYAKCG 329
Query: 122 DVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+ A K+ +W ++I GLA+ G+ +++ +F +ML+ ++KPDE+ +V VL+
Sbjct: 330 SMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGNVKPDEITFVAVLA 389
Query: 174 ACTH 177
AC+H
Sbjct: 390 ACSH 393
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 15/152 (9%)
Query: 19 RGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN-------IMGD 71
RG AR FD++P D ++ +I G + R+A++++ M + + D
Sbjct: 55 RGGTAHARLVFDRIPHPDRFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPD 114
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV-------- 123
+ T +L A A + A + G + ++ K ++D F NALI M+ D+
Sbjct: 115 KRTFPFVLRACAAMGAGETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALFD 174
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQ 155
+A++D +W+ MI G A G+ A ++F +
Sbjct: 175 GEAREDAVAWSAMISGFARRGDIGAARELFDE 206
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 45/179 (25%), Positives = 66/179 (36%), Gaps = 47/179 (26%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D A++ + G + A FD D V W+AMI G+ R A LF
Sbjct: 149 DAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAARELF---- 204
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
D++ VK D+ + N +I Y D+
Sbjct: 205 ----------------------------------DESPVK-DLVSWNVMITAYAKLGDMA 229
Query: 125 KAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
A+ +D SW MI G G+ +A+++F QM KPD V + +LSAC
Sbjct: 230 PARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLSLLSAC 288
Score = 41.2 bits (95), Expect = 0.17, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G + A + F M +++ W ++I G E++ +F++M N+
Sbjct: 320 ALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGNVKP 379
Query: 71 DEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDM 116
DE T V++L A ++ +D G E+ + +++ +I ++DM
Sbjct: 380 DEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGCMVDM 426
>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 105/178 (58%), Gaps = 10/178 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+A++ Y G + AR+ FD M ++D V W AMI GY + EA+ LFQ+M+ S+
Sbjct: 267 SALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTA 326
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
D+ T++ IL+A A++ ALDLG+ ++ Y + ++D++ G AL+DMY C ++ A
Sbjct: 327 PDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRV 386
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLR--ASIKPDEVAYVGVLSACTH 177
K++ SW MI LA G +AL +F M+ ++ P+++ +VGVLSAC H
Sbjct: 387 FYGMPNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVH 444
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 103/174 (59%), Gaps = 8/174 (4%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
++++ Y G++ AR+ FD++ ++D V W +MI GY ++ EA+ LF+EM +
Sbjct: 167 SLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQP 226
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA---- 126
+E ++VS+L A L L LG W++ ++ +NK+ + F G+ALI MY C D+ A
Sbjct: 227 NEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIF 286
Query: 127 ----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+KDK +W MI G A +G ++A+ +F M +S PD++ +G+LSAC
Sbjct: 287 DSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACA 340
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 8/133 (6%)
Query: 51 NRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAG 110
N+ AL + M+ + + T + A +NL A++ G + + + D
Sbjct: 106 NKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVS 165
Query: 111 NALIDMYCICADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIK 162
++LI MY C + E +QKD SW +MI G + + +A+ +F +M+ A +
Sbjct: 166 HSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQ 225
Query: 163 PDEVAYVGVLSAC 175
P+E++ V VL AC
Sbjct: 226 PNEMSLVSVLGAC 238
>gi|359493517|ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Vitis vinifera]
Length = 573
Score = 132 bits (331), Expect = 8e-29, Method: Composition-based stats.
Identities = 71/194 (36%), Positives = 109/194 (56%), Gaps = 17/194 (8%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SWTA++S Y GQ+ A F++MPERD W A+I GY + F EAL+LF
Sbjct: 217 MTERNVVSWTAMISGYTRLGQIGNAVLLFEEMPERDVPSWNALIAGYTQNGLFMEALSLF 276
Query: 61 QEMQTSNIMG-------DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNAL 113
+ M ++ T V L+A + L LG+WI Y+ +N + D F NAL
Sbjct: 277 RRMIAVEAGAWGQGNRPNQVTAVCSLSACGHTGMLRLGKWIHGYVYRNGLGLDSFVSNAL 336
Query: 114 IDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLR--ASIKP 163
+DMY C +++A ++ SW +MI LA+ G A+ +F +M+ + +KP
Sbjct: 337 VDMYGKCGCLKEARRVFDRTLERSLTSWNSMINCLALHGQSQNAISVFEEMMTCGSGVKP 396
Query: 164 DEVAYVGVLSACTH 177
DEV ++G+L+ACTH
Sbjct: 397 DEVTFIGLLNACTH 410
>gi|413924390|gb|AFW64322.1| hypothetical protein ZEAMMB73_176484 [Zea mays]
Length = 496
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 105/185 (56%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V+++ ++S + G VD A + FD MP D V WTA+IDG+++ R EA+ F
Sbjct: 133 MPVRSVVTYNTMISGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCF 192
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M + D T+V++++A A + AL LG W+ + + +++ ++ N+LIDMY C
Sbjct: 193 RAMLLDGVETDYITLVAVVSACAEVGALGLGMWVHRLVLRQRLERNVRVANSLIDMYARC 252
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
V A ++ SW +MIVG A +G A+++F +M R KPD V GVL
Sbjct: 253 GQVNLAAQVFRSIRKRTVVSWNSMIVGFAANGRCTDAIELFEEMRRQGFKPDAVTLTGVL 312
Query: 173 SACTH 177
+AC+H
Sbjct: 313 TACSH 317
>gi|224058579|ref|XP_002299552.1| predicted protein [Populus trichocarpa]
gi|222846810|gb|EEE84357.1| predicted protein [Populus trichocarpa]
Length = 505
Score = 131 bits (330), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 110/183 (60%), Gaps = 16/183 (8%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ DV+SW +++S ++ G V+ +Q FD+M +R V W +IDGY++ EA LF +
Sbjct: 189 DPDVVSWNSMISGLVDLGFVEEGKQMFDRMSKRSLVTWNCLIDGYVKAGLLMEARELFDQ 248
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M+ FT+VS+LTA + L AL+ GEW++ +I+KN + + G AL++M+ C
Sbjct: 249 MR--------FTMVSVLTACSYLGALEQGEWMQAHIEKNGIDVNSVLGTALVEMFAKCGS 300
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+E+A ++D +W ++I LA G+G +A +FS MLR++ D + ++G+LS
Sbjct: 301 IERALSVFKSIEERDVGAWNSIIHKLAAHGHGQEAFAIFSDMLRSNTLLDGIIFLGLLSV 360
Query: 175 CTH 177
C H
Sbjct: 361 CRH 363
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 12/158 (7%)
Query: 13 VSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ-TSNIMGD 71
+S+Y N ++ A+ F+ + + MI GY + + AL+LF M +N +
Sbjct: 69 ISQYAN---INYAQSIFNFDKNPNTFAYNVMIRGYAQREKPENALSLFYSMLCNANSGQN 125
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA----- 126
+ T +L A + +RA++ G+ + + K+ + D+F N+LI MY C + A
Sbjct: 126 KLTFPFVLKACSQVRAIEEGKQVHGLVFKHGLSEDLFVQNSLISMYSSCGLIGFACQVFN 185
Query: 127 ---QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI 161
D SW +MI GL G ++ MF +M + S+
Sbjct: 186 KIDDPDVVSWNSMISGLVDLGFVEEGKQMFDRMSKRSL 223
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V + G ++ A F + ERD W ++I +EA +F +M SN +
Sbjct: 289 TALVEMFAKCGSIERALSVFKSIEERDVGAWNSIIHKLAAHGHGQEAFAIFSDMLRSNTL 348
Query: 70 GDEFTIVSILTARANLRALDLGE-WIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127
D + +L+ +L +D G+ + + ++ + + ++D+ C +E+A+
Sbjct: 349 LDGIIFLGLLSVCRHLGLVDEGKRFFQLMSEEYGLVPKVEHYGCMVDLLCHADLLEEAR 407
>gi|195651797|gb|ACG45366.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 544
Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats.
Identities = 66/185 (35%), Positives = 103/185 (55%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ W+++V+ Y G + AR FD++P R+ V W A+I GY ++ +AL F
Sbjct: 212 MPARNAFVWSSMVTGYFKAGDAEEARAVFDRIPTRNLVNWNALIAGYAQIGCSEQALEAF 271
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M + DEFT+ S+L+A A L +L+ G+ + +I++ ++ + F N LIDMY C
Sbjct: 272 HLMLQERVKPDEFTMASLLSACAQLGSLEQGKKVHDFINQEHIRKNHFVMNGLIDMYAKC 331
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
D+ A+ K+ W TMI LA G D+AL +F QM R+ KP+ + + VL
Sbjct: 332 GDLAHARYIFDSMRWKNNECWNTMISALASHGQSDEALHLFFQMERSGRKPNTITVLAVL 391
Query: 173 SACTH 177
ACTH
Sbjct: 392 GACTH 396
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 37/209 (17%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+D++ T IVS Y G + AR+ FD+MP+R+ + + A++ GY AL LF M
Sbjct: 89 RDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVISYNALLAGYAVAGDMDGALALFGGM 148
Query: 64 QT---------------------------SNIMGDEFTIVSILTARANLRALDLGEWIKT 96
++ + G + + + + A D+ E +
Sbjct: 149 RSWTHVTWATLIRGFAEKGDMAEARRWFEATPPGMRTVVTWTVLVQGYVCAGDM-ETARE 207
Query: 97 YIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDK 148
D+ +N F ++++ Y D E+A+ ++ +W +I G A G ++
Sbjct: 208 VFDRMPARN-AFVWSSMVTGYFKAGDAEEARAVFDRIPTRNLVNWNALIAGYAQIGCSEQ 266
Query: 149 ALDMFSQMLRASIKPDEVAYVGVLSACTH 177
AL+ F ML+ +KPDE +LSAC
Sbjct: 267 ALEAFHLMLQERVKPDEFTMASLLSACAQ 295
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 9/126 (7%)
Query: 40 WTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL-RALDLGEWIKTYI 98
W ++ Y + REA ++ V + A A+ L LG+ +
Sbjct: 23 WAHLVKEYASQSLLREAALVYARNLPRRTHHQPLLPVLLKAAAASSPTELGLGKSLHAEA 82
Query: 99 DKNKVKNDIFAGNALIDMYCIC---ADVEKA-----QKDKFSWTTMIVGLAISGNGDKAL 150
K+ D+ G ++ MYC C AD +A ++ S+ ++ G A++G+ D AL
Sbjct: 83 LKSAFARDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVISYNALLAGYAVAGDMDGAL 142
Query: 151 DMFSQM 156
+F M
Sbjct: 143 ALFGGM 148
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 38/165 (23%), Positives = 66/165 (40%), Gaps = 26/165 (15%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
++ Y G + AR FD M ++ W MI + EAL LF +M+ S
Sbjct: 323 GLIDMYAKCGDLAHARYIFDSMRWKNNECWNTMISALASHGQSDEALHLFFQMERSGRKP 382
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDK 130
+ T++++L A + +D G I +D V + L+D+
Sbjct: 383 NTITVLAVLGACTHGGFVDEGLQIFNKLDAYGVGAGVEHYGCLVDL-------------- 428
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
L +G +A ++ + M S +P+EV + +L AC
Sbjct: 429 ---------LGRAGKLKEAYEIVNNM---SEEPNEVIWGSLLGAC 461
>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 595
Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats.
Identities = 67/176 (38%), Positives = 108/176 (61%), Gaps = 9/176 (5%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y N G V A + FD+MPE+D V W ++I+G+ + EAL L+ EM + I
Sbjct: 161 SLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKP 220
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--- 127
D FTIVS+L+A A + AL LG+ + Y+ K + ++ + N L+D+Y C VE+A+
Sbjct: 221 DGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLF 280
Query: 128 -----KDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSACTH 177
K+ SWT++IVGLA++G G +A+++F M + P E+ +VG+L AC+H
Sbjct: 281 DEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSH 336
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 43/146 (29%), Positives = 77/146 (52%), Gaps = 9/146 (6%)
Query: 39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMG-DEFTIVSILTARANLRALDLGEWIKTY 97
+W +I GY + A +L++EM+ S ++ D T ++ A + + LGE I +
Sbjct: 87 IWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSV 146
Query: 98 IDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKA 149
+ ++ + I+ N+L+ +Y C DV A +KD +W ++I G A +G ++A
Sbjct: 147 VIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEA 206
Query: 150 LDMFSQMLRASIKPDEVAYVGVLSAC 175
L ++++M IKPD V +LSAC
Sbjct: 207 LALYTEMNSKGIKPDGFTIVSLLSAC 232
Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 89/173 (51%), Gaps = 15/173 (8%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRF-REALTLFQE 62
+++ S ++ Y G+V+ A+ FD+M +++ V WT++I G L VN F +EA+ LF+
Sbjct: 255 RNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVG-LAVNGFGKEAIELFKY 313
Query: 63 MQ-TSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M+ T ++ E T V IL A ++ + G E+ + ++ K++ I ++D+
Sbjct: 314 MESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARA 373
Query: 121 ADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 164
V+KA Q + W T++ + G+ D L F+++ ++P+
Sbjct: 374 GQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSD--LAEFARIQILQLEPN 424
>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
Length = 1495
Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats.
Identities = 67/176 (38%), Positives = 108/176 (61%), Gaps = 9/176 (5%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y N G V A + FD+MPE+D V W ++I+G+ + EAL L+ EM + I
Sbjct: 161 SLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKP 220
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--- 127
D FTIVS+L+A A + AL LG+ + Y+ K + ++ + N L+D+Y C VE+A+
Sbjct: 221 DGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLF 280
Query: 128 -----KDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSACTH 177
K+ SWT++IVGLA++G G +A+++F M + P E+ +VG+L AC+H
Sbjct: 281 DEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSH 336
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 43/146 (29%), Positives = 77/146 (52%), Gaps = 9/146 (6%)
Query: 39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMG-DEFTIVSILTARANLRALDLGEWIKTY 97
+W +I GY + A +L++EM+ S ++ D T ++ A + + LGE I +
Sbjct: 87 IWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSV 146
Query: 98 IDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKA 149
+ ++ + I+ N+L+ +Y C DV A +KD +W ++I G A +G ++A
Sbjct: 147 VIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEA 206
Query: 150 LDMFSQMLRASIKPDEVAYVGVLSAC 175
L ++++M IKPD V +LSAC
Sbjct: 207 LALYTEMNSKGIKPDGFTIVSLLSAC 232
Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 89/173 (51%), Gaps = 15/173 (8%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRF-REALTLFQE 62
+++ S ++ Y G+V+ A+ FD+M +++ V WT++I G L VN F +EA+ LF+
Sbjct: 255 RNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVG-LAVNGFGKEAIELFKY 313
Query: 63 MQ-TSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M+ T ++ E T V IL A ++ + G E+ + ++ K++ I ++D+
Sbjct: 314 MESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARA 373
Query: 121 ADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 164
V+KA Q + W T++ + G+ D L F+++ ++P+
Sbjct: 374 GQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSD--LAEFARIQILQLEPN 424
>gi|224064340|ref|XP_002301427.1| predicted protein [Populus trichocarpa]
gi|222843153|gb|EEE80700.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 131 bits (330), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 111/188 (59%), Gaps = 10/188 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D+ +W ++++ Y G ++ A + F MP R V WT MI GY + + +AL +F
Sbjct: 71 MTVRDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSVVSWTTMISGYSQNGMYTKALEMF 130
Query: 61 QEMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+M+ + +E TI S+ +A A L AL++GE I++Y N + +++ N L++MY
Sbjct: 131 LKMEKDKEVRPNEVTIASVFSACAKLGALEVGERIESYARDNGLMKNLYVSNTLLEMYAR 190
Query: 120 CADVEKAQ---------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C ++ A+ ++ SW +M++GLA+ G ++AL ++ QML I+PD+V +VG
Sbjct: 191 CGKIDAARHVFNEIGKRRNLCSWNSMMMGLAVHGRSNEALQLYDQMLGEGIEPDDVTFVG 250
Query: 171 VLSACTHN 178
++ ACTH
Sbjct: 251 LILACTHG 258
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 60/145 (41%), Gaps = 40/145 (27%)
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI----------- 119
+E T + A A+ +L G+ I T+ K+ D++A AL+DMY
Sbjct: 9 NELTFTFLFPACASFYSLLHGKVIHTHFIKSGFDFDVYALTALVDMYAKLGVLMLARQVF 68
Query: 120 --------------------CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALD 151
D+E A + SWTTMI G + +G KAL+
Sbjct: 69 DEMTVRDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSVVSWTTMISGYSQNGMYTKALE 128
Query: 152 MFSQMLR-ASIKPDEVAYVGVLSAC 175
MF +M + ++P+EV V SAC
Sbjct: 129 MFLKMEKDKEVRPNEVTIASVFSAC 153
>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
[Vitis vinifera]
Length = 575
Score = 131 bits (330), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 101/186 (54%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ +W++++S Y +G V AR FD++P R+ V W ++I GY + EAL F
Sbjct: 250 MPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAF 309
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+MQ DE TI S+L+A + L LD G+ I ++ +K + F N L+DMY C
Sbjct: 310 GKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKC 369
Query: 121 ADVEK--------AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
D+ A +++ W +MI G AI G +AL+ F +M + PDE+ ++ VL
Sbjct: 370 GDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVL 429
Query: 173 SACTHN 178
SAC H
Sbjct: 430 SACAHG 435
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 93/206 (45%), Gaps = 33/206 (16%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+ T++V Y G V +R+ FD MPER+ V W AMI GYL + A+ LF++M
Sbjct: 128 DVMIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMS 187
Query: 65 TSNIM------------GD-------------EFTIVSILTARANLRALDLGEWIKTYID 99
+ GD E V T + A + +
Sbjct: 188 IRTAVTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVF 247
Query: 100 KNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALD 151
+ + + FA +++I YC +V++A+ ++ +W ++I G A +G ++AL+
Sbjct: 248 EGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALE 307
Query: 152 MFSQMLRASIKPDEVAYVGVLSACTH 177
F +M +PDEV VLSAC+
Sbjct: 308 AFGKMQAEGFEPDEVTIASVLSACSQ 333
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 26/165 (15%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+V Y G + AR F+ M R+ W +MI G+ + +EAL F M+ S+
Sbjct: 361 GLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGP 420
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDK 130
DE T +S+L+A A+ ++ G I + ++K + I LID+
Sbjct: 421 DEITFLSVLSACAHGGFVNAGLEIFSRMEKYGLTTGIKHYGCLIDL-------------- 466
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
L +G +A D+ +M +KP++V + +L AC
Sbjct: 467 ---------LGRAGRIKEAYDLIKRM---PVKPNDVVWGALLGAC 499
>gi|222622042|gb|EEE56174.1| hypothetical protein OsJ_05117 [Oryza sativa Japonica Group]
Length = 545
Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats.
Identities = 72/185 (38%), Positives = 104/185 (56%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD ++W +++ Y+ VD A F QMP + V WTA+I G+++ + +AL LF
Sbjct: 180 MLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELF 239
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M + TIV +L+A A++ ALDLG I Y K+ +I NAL+DMY
Sbjct: 240 GKMLLEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKS 299
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ A KD F+WTTMI + GNG KA+++F MLR+ I P+ V +V VL
Sbjct: 300 GSIASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSVTFVSVL 359
Query: 173 SACTH 177
SAC+H
Sbjct: 360 SACSH 364
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 53/212 (25%), Positives = 89/212 (41%), Gaps = 40/212 (18%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N+ IS I Y G+ A + FD++P D + +T+++ +L+++ +A+++F
Sbjct: 51 NQQSIS-CKIFRSYAEFGRPADAGRLFDEIPHPDIISFTSLMSLHLKLDHHWKAISVFSH 109
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
S D F V L+A L +G + I + + +++ NAL+DMYC C
Sbjct: 110 AIASGHRPDGFAAVGALSASGGLGDQRIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGK 169
Query: 123 VEKAQ---------------------------------------KDKFSWTTMIVGLAIS 143
E A+ K SWT +I G
Sbjct: 170 FEPARTVFDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQD 229
Query: 144 GNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+AL++F +ML +P+ + VGVLSAC
Sbjct: 230 KQPIQALELFGKMLLEGHRPNHITIVGVLSAC 261
>gi|218189919|gb|EEC72346.1| hypothetical protein OsI_05579 [Oryza sativa Indica Group]
Length = 545
Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats.
Identities = 72/185 (38%), Positives = 104/185 (56%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD ++W +++ Y+ VD A F QMP + V WTA+I G+++ + +AL LF
Sbjct: 180 MLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELF 239
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M + TIV +L+A A++ ALDLG I Y K+ +I NAL+DMY
Sbjct: 240 GKMLLEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKS 299
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ A KD F+WTTMI + GNG KA+++F MLR+ I P+ V +V VL
Sbjct: 300 GSIASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSVTFVSVL 359
Query: 173 SACTH 177
SAC+H
Sbjct: 360 SACSH 364
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 53/212 (25%), Positives = 89/212 (41%), Gaps = 40/212 (18%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N+ IS I Y G+ A + FD++P D + +T+++ +L+++ +A+++F
Sbjct: 51 NQQSIS-CKIFRSYAEFGRPADAGRLFDEIPHPDIISFTSLMSLHLKLDHHWKAISVFSH 109
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
S D F V L+A L +G + I + + +++ NAL+DMYC C
Sbjct: 110 AIASGHRPDGFAAVGALSASGGLGDQRIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGK 169
Query: 123 VEKAQ---------------------------------------KDKFSWTTMIVGLAIS 143
E A+ K SWT +I G
Sbjct: 170 FEPARTVFDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQD 229
Query: 144 GNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+AL++F +ML +P+ + VGVLSAC
Sbjct: 230 KQPIQALELFGKMLLEGHRPNHITIVGVLSAC 261
>gi|224119882|ref|XP_002318186.1| predicted protein [Populus trichocarpa]
gi|222858859|gb|EEE96406.1| predicted protein [Populus trichocarpa]
Length = 537
Score = 131 bits (330), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 104/185 (56%), Gaps = 8/185 (4%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
+DV+S+ ++ ++ G V AR+ FD MP RD V W +I G + + EA+ LF
Sbjct: 186 PQRDVVSYNVLIDGFVKAGDVVKARELFDLMPVRDSVSWNTIIAGCAKGDYCEEAIELFD 245
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY--CI 119
M I D +VS L+A A L L+ G+ I YI++N +K D F L+D Y C
Sbjct: 246 FMMDLEIRPDNVALVSTLSACAQLGELEKGKKIHDYIERNAMKVDTFLSTGLVDFYAKCG 305
Query: 120 CADV------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
C D+ + K+ F+W M+VGLA+ G G+ L+ FS+M+ A +KPD ++ +GVL
Sbjct: 306 CVDIALKIFDSSSDKNLFTWNAMLVGLAMHGYGELLLEYFSRMIEAGVKPDGISILGVLV 365
Query: 174 ACTHN 178
C+H+
Sbjct: 366 GCSHS 370
>gi|449445234|ref|XP_004140378.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 542
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 107/187 (57%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K++++W A++ Y G +++AR+ F+ MPE+D V W+++IDGY++ + EA+ LF
Sbjct: 174 MPRKNLVTWNAMLDGYAKCGDLNMAREVFNLMPEKDVVSWSSLIDGYVKGRVYGEAMALF 233
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M M +E T+VS L A A+L AL+ G + YI +N++ I +L+DMY C
Sbjct: 234 ERMSFDGPMANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKC 293
Query: 121 ADVEKA----------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
+ +A + D W +I GLA G +A+++F +M I PDE+ Y+
Sbjct: 294 GAIHEALTVFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLC 353
Query: 171 VLSACTH 177
+LS C H
Sbjct: 354 LLSCCAH 360
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 8/143 (5%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81
+D + + +P W +I + ++T+F +M + + D T ++ A
Sbjct: 63 LDYSYKLILNVPNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKA 122
Query: 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKFSW 133
+ L +LG + +I K+ + D F N+LI MY C D+ E +K+ +W
Sbjct: 123 TSKLLNQELGMAVHVHIVKSGHEIDKFIQNSLIHMYASCRDIASARKVFDEMPRKNLVTW 182
Query: 134 TTMIVGLAISGNGDKALDMFSQM 156
M+ G A G+ + A ++F+ M
Sbjct: 183 NAMLDGYAKCGDLNMAREVFNLM 205
>gi|218186297|gb|EEC68724.1| hypothetical protein OsI_37217 [Oryza sativa Indica Group]
Length = 387
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 108/186 (58%), Gaps = 11/186 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ W A ++R + G +D A + F +MPERD V W ++I GY ++ ++ +AL +F
Sbjct: 73 MPVRNLSWWNAEIARNVRIGYMDEAARIFSEMPERDAVSWNSLISGYTKLGKYTQALGIF 132
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
QEMQ + I E T+V +L A A + LDLG I + + D GNALIDMY C
Sbjct: 133 QEMQENGIQPTELTLVLVLGACAKIGKLDLGTNIHRNLQNKGIVADGLVGNALIDMYAKC 192
Query: 121 ADVEKAQK--DKFS------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ A+K D+ S W MIVG ++ G +AL++F M I+P+ V ++GVL
Sbjct: 193 GMLDLAKKVFDRMSMRDITCWNAMIVGFSVHGCSREALELFDSM---KIEPNPVTFLGVL 249
Query: 173 SACTHN 178
+AC+H
Sbjct: 250 TACSHG 255
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 18/185 (9%)
Query: 1 MKNKDVIS----WTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREA 56
++NK +++ A++ Y G +D+A++ FD+M RD W AMI G+ REA
Sbjct: 170 LQNKGIVADGLVGNALIDMYAKCGMLDLAKKVFDRMSMRDITCWNAMIVGFSVHGCSREA 229
Query: 57 LTLFQEMQTSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALID 115
L LF M+ I + T + +LTA ++ ++ G ++ + I+ ++ + +ID
Sbjct: 230 LELFDSMK---IEPNPVTFLGVLTACSHGGLVNEGRKYFNSMIEDYRIVPYVKHYGCMID 286
Query: 116 MYCICADVEKAQ---KDKFS------WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 166
M C +E+A K+ S W ++ + G+ D A MF LR I D
Sbjct: 287 MLCRYGKIEEAYLMIKENPSTASSVLWKMLLAACRVHGHIDLAY-MFFHELRELILTDNG 345
Query: 167 AYVGV 171
V +
Sbjct: 346 GLVTI 350
>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Glycine max]
Length = 785
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 108/182 (59%), Gaps = 9/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+VI++T+++ Y G +D AR FD + RD V WTAMI GY + +AL LF+ M
Sbjct: 345 NVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMI 404
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ +T+ ++L+ ++L +LD G+ + + + + + GNALI MY ++
Sbjct: 405 REGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIK 464
Query: 125 KAQK---------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
A+K D +WT+MI+ LA G G++A+++F +MLR ++KPD + YVGVLSAC
Sbjct: 465 DARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSAC 524
Query: 176 TH 177
TH
Sbjct: 525 TH 526
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 99/215 (46%), Gaps = 40/215 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K SW I+S + G +D AR+ FD++P+ D V WT MI GY + F+ A+ F
Sbjct: 74 MPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAF 133
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M +S I +FT ++L + A +ALD+G+ + +++ K + N+L++MY C
Sbjct: 134 LRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKC 193
Query: 121 ADVEKAQ---------------------------------------KDKFSWTTMIVGLA 141
D A+ D SW ++I G
Sbjct: 194 GDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYC 253
Query: 142 ISGNGDKALDMFSQMLR-ASIKPDEVAYVGVLSAC 175
G +AL+ FS ML+ +S+KPD+ VLSAC
Sbjct: 254 HQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSAC 288
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 94/215 (43%), Gaps = 42/215 (19%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ KD +W ++S ++ Q D+A FDQM + D V W ++I GY AL F
Sbjct: 206 MRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETF 265
Query: 61 QEM-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
M ++S++ D+FT+ S+L+A AN +L LG+ I +I + V GNALI MY
Sbjct: 266 SFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAK 325
Query: 120 CADVEKA-----------------------------------------QKDKFSWTTMIV 138
VE A +D +WT MIV
Sbjct: 326 SGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIV 385
Query: 139 GLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
G A +G AL +F M+R KP+ VLS
Sbjct: 386 GYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLS 420
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 26/166 (15%)
Query: 11 AIVSRYINRGQVDIARQCFDQM-PERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
A+++ Y G + AR+ F+ + RD + WT+MI + EA+ LF++M N+
Sbjct: 452 ALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLK 511
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
D T V +L+A ++ ++ G K+Y N +KN V +
Sbjct: 512 PDHITYVGVLSACTHVGLVEQG---KSYF--NLMKN-----------------VHNIEPT 549
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ MI L +G ++A + M I+PD VA+ +LS+C
Sbjct: 550 SSHYACMIDLLGRAGLLEEAYNFIRNM---PIEPDVVAWGSLLSSC 592
>gi|255572939|ref|XP_002527400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533210|gb|EEF34966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 621
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 71/195 (36%), Positives = 110/195 (56%), Gaps = 18/195 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPER---------DYVLWTAMIDGYLRVN 51
MKNK + SW A+++ + G D A + F Q+ ER + V W+A+IDG+
Sbjct: 239 MKNKSLASWNALITSHAEAGLCDEALEIFSQL-ERSGDCPRLRPNVVSWSAIIDGFASKG 297
Query: 52 RFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGN 111
R +EAL LF+ MQ + I+ + TI ++L+ A L AL LG I ++ + + N+I GN
Sbjct: 298 REKEALELFRRMQHAKILANAVTISTVLSLCAELAALHLGREIHGHVVRAVMVNNILVGN 357
Query: 112 ALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKP 163
L++MY C +++ +KD SW +MI G + G G AL+ F QM++ KP
Sbjct: 358 GLVNMYAKCGCLKEGHMIFEKTERKDLISWNSMITGYGMHGLGMNALETFDQMIKLGFKP 417
Query: 164 DEVAYVGVLSACTHN 178
D V +V VLS+C+H+
Sbjct: 418 DGVTFVAVLSSCSHS 432
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 16/188 (8%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMP----ERDYVLWTAMIDGYLRVNRFREA 56
M + ISW +VS Y + A + F +M E + V WT++I Y R EA
Sbjct: 103 MSVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLVTWTSLISSYARSGWHEEA 162
Query: 57 LTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116
+ LF M+ + + +++ A+L A + I Y K + F +ALI +
Sbjct: 163 MELFGLMRMKGVEVSGEALAVVISICADLGAFVRAKIIHEYAVKGGFEEYSFVKSALICV 222
Query: 117 YCICADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS----IKPD 164
Y DV E K SW +I A +G D+AL++FSQ+ R+ ++P+
Sbjct: 223 YGKHGDVNGAWNLFLEMKNKSLASWNALITSHAEAGLCDEALEIFSQLERSGDCPRLRPN 282
Query: 165 EVAYVGVL 172
V++ ++
Sbjct: 283 VVSWSAII 290
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 8/122 (6%)
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M+ +GD FT ++ A A + + LG+ I ++ + ++ + GN LI MY
Sbjct: 31 RRMRKIGTLGDGFTFPLVIRACAYMGSFILGKTIHGHVLEMGFQSHLHVGNELIGMYAKL 90
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ A+ + SW TM+ A + + + AL++F +M ++P+ V + ++
Sbjct: 91 GRMRDARHLFDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLVTWTSLI 150
Query: 173 SA 174
S+
Sbjct: 151 SS 152
>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 113/186 (60%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++SW +++ Y G++++AR+ F +MP +D V W+ MI G+ F EA + F
Sbjct: 198 MPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFF 257
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+E+Q + +E ++ +L+A A AL+ G+ + +I+K+ + + NAL+D Y C
Sbjct: 258 RELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKC 317
Query: 121 ADVEKAQ---------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
+V AQ ++ SWT+M+ LA+ G+G++A+ +F +M + I+PDE+A++ +
Sbjct: 318 GNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISL 377
Query: 172 LSACTH 177
L AC+H
Sbjct: 378 LYACSH 383
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 73/167 (43%), Gaps = 31/167 (18%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T ++S Y G V AR+ FD+MPE + + W AM+ R + LF M N+M
Sbjct: 145 TTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMKGGRELFDLMPVRNLM 204
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
+ A GE ++ ++F +E KD
Sbjct: 205 SWNVMLAGYTKA---------GEL--------ELAREMF--------------LEMPMKD 233
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
SW+TMIVG A +G ++A F ++ R ++P+E + GVLSAC
Sbjct: 234 DVSWSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACA 280
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 9/144 (6%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI-MGDEFTIVSILT 80
+D A + F P D + +I G +R +++L F EM+ ++ D F+ I+
Sbjct: 55 LDYACRLFRYTPNPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVK 114
Query: 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKFS 132
A ANLR++ +G + + + +F G LI MY C V E + + +
Sbjct: 115 AAANLRSVRVGIQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIA 174
Query: 133 WTTMIVGLAISGNGDKALDMFSQM 156
W M+ G+ ++F M
Sbjct: 175 WNAMVTACCRGGDMKGGRELFDLM 198
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 11 AIVSRYINRGQVDIARQCFDQ-MPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
A++ Y G V +A+ F++ M ER+ V WT+M+ EA+ +F +M+ S I
Sbjct: 309 ALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIR 368
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNK----VKNDIFAGNALIDMYCICADVEK 125
DE +S+L A ++ ++ G Y DK K ++ I ++D+Y ++K
Sbjct: 369 PDEIAFISLLYACSHAGLVEQG---CEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQK 425
Query: 126 A 126
A
Sbjct: 426 A 426
>gi|413944078|gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
Length = 794
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 105/187 (56%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV SWT++VS Y G ++ A + F ++P R+ V W+ M+ Y N EA+ +F
Sbjct: 294 MPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIF 353
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWI-KTYIDKNKVKNDIFAGNALIDMYCI 119
+M + + + T+VS+L+A A L +LD+G W+ TYI +KV+ NA IDM+
Sbjct: 354 NDMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAK 413
Query: 120 CADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C DV A K+ SW TMI+ + G ++AL +F + I PDE Y+GV
Sbjct: 414 CGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGV 473
Query: 172 LSACTHN 178
LSAC+H
Sbjct: 474 LSACSHG 480
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 98/215 (45%), Gaps = 40/215 (18%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ V++ A+V Y + + AR+ FD+M +RD V WT +IDGY R EA +F
Sbjct: 163 GQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCR 222
Query: 63 MQTS-NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
M + ++ +E T+V+ +A + L LG + I ++ + + NAL+DM+ C
Sbjct: 223 MVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCG 282
Query: 122 DVEKAQ--------KDKFSWTTMIVGLAISGN---------------------------- 145
V A+ KD +SWT+M+ A G+
Sbjct: 283 CVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSH 342
Query: 146 ---GDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
D+A+ +F+ M+ A ++P + V VLSAC
Sbjct: 343 ANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQ 377
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 19/151 (12%)
Query: 37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIV----SILTARANLRALDLGE 92
Y+L T M+ G+LR + ALTLF+ + + D TIV + T+ + A+
Sbjct: 98 YMLAT-MMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFAVKAAATSSSPTEAIHCVA 156
Query: 93 WIKTYIDKNKVKNDIFAGNALIDMYC---ICADVEK-----AQKDKFSWTTMIVGLAISG 144
+ + +I ++ + AGNAL+ MY + D K A +D SWTT+I G A G
Sbjct: 157 FKRGFIGQS-----VLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGG 211
Query: 145 NGDKALDMFSQMLRA-SIKPDEVAYVGVLSA 174
D+A +F +M+ A S+ P+EV V SA
Sbjct: 212 LPDEAWRVFCRMVVAESVWPNEVTLVAAASA 242
>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 599
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 104/177 (58%), Gaps = 9/177 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
A+++ Y+ G +D AR+ FD++PE++ V+W ++I GY ++ E + L +EM SN+
Sbjct: 247 AALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLK 306
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK- 128
D FT+ +L+A A + A +LG W+ + +K + D+F G ALIDMY C + A+K
Sbjct: 307 PDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGIW-DVFIGTALIDMYAKCGFIGAARKV 365
Query: 129 -------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+ +W ++ G A G + A+++FS+M + +PD + ++ VL AC H+
Sbjct: 366 FDQMNERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHS 422
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 94/178 (52%), Gaps = 10/178 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-QTSNI 68
+++++ Y+ G++ A+Q FD+ +D V W A+I GY R ++ +F+EM + +
Sbjct: 144 SSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEV 203
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV-KNDIFAGNALIDMYCICADVEKA- 126
+E T++ ++ A + L LG I Y+ K+ V + + ALI++Y C ++ A
Sbjct: 204 RPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGAR 263
Query: 127 -------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+K+ W ++I G G+ ++ +++ +M +++KPD GVLSAC
Sbjct: 264 KLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSACAQ 321
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 90/176 (51%), Gaps = 10/176 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT-SNI 68
T I++ +++ +D A Q F+Q E D ++ AMI Y A++++ +M+ NI
Sbjct: 42 TKIINSFLSHACLDYATQVFNQTQEPDGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNI 101
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ- 127
+GD++T + A A+ A++ G+ + I + + D F ++L++ Y +C ++ AQ
Sbjct: 102 LGDKYTYPFVFKACASQFAVEKGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQ 161
Query: 128 -------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVAYVGVLSAC 175
KD W +I G A G + +F +M+ ++P+E +G++ AC
Sbjct: 162 VFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVAC 217
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 25/172 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV TA++ Y G + AR+ FDQM ER+ W A++ GY + A+ LF EM+
Sbjct: 342 DVFIGTALIDMYAKCGFIGAARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMR 401
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
S D T +++L A A+ ++ G K Y D ++ Y I VE
Sbjct: 402 ESGARPDSITFLAVLHACAHSGLVENG---KQYFD------------LMLQYYKIPPRVE 446
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+ M+ L +G +A ++ M+ ++P+ V + +LSAC+
Sbjct: 447 H-------YGCMVDLLGRAGLLQEARELIKMMV---VEPNVVVWGALLSACS 488
>gi|125595818|gb|EAZ35598.1| hypothetical protein OsJ_19887 [Oryza sativa Japonica Group]
Length = 495
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 102/182 (56%), Gaps = 24/182 (13%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMP-ERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
DV++W A+V +MP +++ V W M+ + R EAL LFQEM
Sbjct: 188 DVVAWNALVDM---------------RMPVKKNVVSWNTMMSAFARAGELEEALALFQEM 232
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
Q + + D+ T V+ L A A L ALD G W+ Y+ + D GNAL+DMY C V
Sbjct: 233 QAAAVRPDDATFVAALGACAQLGALDTGRWLHAYMGRMGHSADGVVGNALLDMYAKCGAV 292
Query: 124 EK--------AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
++ A++D +++T+MI+GLA+ G G+ AL +F+ M RA + P+EV +GVL+AC
Sbjct: 293 DQATEVFDGMARRDVYTYTSMILGLAMHGRGEDALSLFAGMQRAGVTPNEVTLLGVLTAC 352
Query: 176 TH 177
H
Sbjct: 353 CH 354
Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 77/169 (45%), Gaps = 9/169 (5%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPE-RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN-- 67
+V Y+ RG++ AR D P RD V TAM+ G+ R EA+ LF M
Sbjct: 90 GLVELYLARGELASARALVDGFPAGRDVVSCTAMVTGHARHGFLDEAVVLFFAMADDRCV 149
Query: 68 IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127
+ + L LG + + KV D+ A NAL+DM +
Sbjct: 150 VHRRPSPPPRRSRRARQIGDLALGREAHRRVAERKVAMDVVAWNALVDMRM------PVK 203
Query: 128 KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
K+ SW TM+ A +G ++AL +F +M A+++PD+ +V L AC
Sbjct: 204 KNVVSWNTMMSAFARAGELEEALALFQEMQAAAVRPDDATFVAALGACA 252
>gi|357143748|ref|XP_003573036.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Brachypodium distachyon]
Length = 484
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 105/185 (56%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ V+++ +++ + G V AR+ FD+MP D V WTA+IDG ++ R EA+ F
Sbjct: 132 MPDRSVVTYNTMITGLMRNGLVAAAREVFDEMPAPDKVSWTALIDGCVKNGRHDEAIDCF 191
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M + D T+V+ ++A A + AL LG W+ ++ ++++++ N+LIDMY C
Sbjct: 192 HSMLRDGVEPDYVTLVAAISACAEVGALGLGMWVHRFVVDKRLEHNVRVANSLIDMYARC 251
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
V+ A ++ SW +MIVG A +G A++ F M R KPD V + GVL
Sbjct: 252 GQVDFARQVFGRIRKRTVVSWNSMIVGFAANGQYADAVEHFEAMRREGFKPDTVTFTGVL 311
Query: 173 SACTH 177
+AC+H
Sbjct: 312 TACSH 316
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 25/165 (15%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y GQVD ARQ F ++ +R V W +MI G+ ++ +A+ F+ M+
Sbjct: 243 SLIDMYARCGQVDFARQVFGRIRKRTVVSWNSMIVGFAANGQYADAVEHFEAMRREGFKP 302
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDK 130
D T +LTA ++ D G Y D + ++ I A ++ Y D+
Sbjct: 303 DTVTFTGVLTACSHAGLTDEG---LRYYDAMRTEHGI---AARMEHYGCVVDL------- 349
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
L +G +A+ + M ++P+EV +L+ C
Sbjct: 350 ---------LGRAGRLGEAMRVVESM---PMRPNEVVLGALLAGC 382
>gi|293331391|ref|NP_001168246.1| uncharacterized protein LOC100382009 [Zea mays]
gi|223946981|gb|ACN27574.1| unknown [Zea mays]
gi|413932359|gb|AFW66910.1| hypothetical protein ZEAMMB73_426189 [Zea mays]
Length = 499
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 109/188 (57%), Gaps = 10/188 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW A++S Y G + AR FD MP R+ W+ MI G + R EAL LF
Sbjct: 172 MSERNVVSWNAMLSAYARAGMLTEARDLFDAMPTRNAATWSCMISGLVLSGRCWEALGLF 231
Query: 61 QEM-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN-KVKNDIFAGNALIDMYC 118
+M +S I+ +E +VS+++A A +R+L+ G W+ Y ++ + + +A+IDMY
Sbjct: 232 GDMVHSSGIVPNEPALVSVVSACAQMRSLEHGAWVHAYAEQELQGAMSVVLASAIIDMYG 291
Query: 119 ICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C + A ++ +SW MI GLA++G +AL + +M ++P+++ ++G
Sbjct: 292 KCGGIHSAIRVFAAMPMRNIYSWNAMITGLAMNGGERQALSLLWKMQMVGVQPNDITFIG 351
Query: 171 VLSACTHN 178
+LSACTH+
Sbjct: 352 LLSACTHS 359
>gi|414879404|tpg|DAA56535.1| TPA: pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 544
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 66/185 (35%), Positives = 103/185 (55%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ W+++V+ Y G + AR FD++P R+ V W A+I GY ++ +AL F
Sbjct: 212 MPARNAFVWSSMVTGYFKAGDAEEARAVFDRIPTRNLVNWNALIAGYAQIGCSEQALEAF 271
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M + DEFT+ S+L+A A L +L+ G+ + +I++ ++ + F N LIDMY C
Sbjct: 272 HLMLQERVKPDEFTMASLLSACAQLGSLEQGKKVHDFINQEHIRKNHFVMNGLIDMYAKC 331
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
D+ A+ K+ W TMI LA G D+AL +F QM R+ KP+ + + VL
Sbjct: 332 GDLAHARYIFDSMRWKNNECWNTMISALASHGQSDEALHLFFQMERSGRKPNTITVLAVL 391
Query: 173 SACTH 177
ACTH
Sbjct: 392 GACTH 396
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 37/209 (17%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+D++ T IVS Y G + AR+ FD+MP+R+ + + A++ GY AL LF M
Sbjct: 89 RDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVISYNALLAGYAVAGDMDGALALFGGM 148
Query: 64 QT---------------------------SNIMGDEFTIVSILTARANLRALDLGEWIKT 96
++ + G + + + + A D+ E +
Sbjct: 149 RSWTHVTWATLIRGFAEKGDMAEARRWFEATPPGMRTVVTWTVLVQGYVCAGDM-ETARE 207
Query: 97 YIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDK 148
D+ +N F ++++ Y D E+A+ ++ +W +I G A G ++
Sbjct: 208 VFDRMPARN-AFVWSSMVTGYFKAGDAEEARAVFDRIPTRNLVNWNALIAGYAQIGCSEQ 266
Query: 149 ALDMFSQMLRASIKPDEVAYVGVLSACTH 177
AL+ F ML+ +KPDE +LSAC
Sbjct: 267 ALEAFHLMLQERVKPDEFTMASLLSACAQ 295
Score = 42.0 bits (97), Expect = 0.100, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 9/126 (7%)
Query: 40 WTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRA-LDLGEWIKTYI 98
W ++ Y + REA ++ V + A A+ A L LG+ +
Sbjct: 23 WAHLVKEYASQSLVREAALVYARNLPRRTHHQPLLPVLLKAAAASSPAELGLGKSLHAEA 82
Query: 99 DKNKVKNDIFAGNALIDMYCIC---ADVEKA-----QKDKFSWTTMIVGLAISGNGDKAL 150
K+ D+ G ++ MYC C AD +A ++ S+ ++ G A++G+ D AL
Sbjct: 83 LKSAFARDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVISYNALLAGYAVAGDMDGAL 142
Query: 151 DMFSQM 156
+F M
Sbjct: 143 ALFGGM 148
Score = 38.5 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 38/165 (23%), Positives = 67/165 (40%), Gaps = 26/165 (15%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
++ Y G + AR FD M ++ W MI + EAL LF +M+ S
Sbjct: 323 GLIDMYAKCGDLAHARYIFDSMRWKNNECWNTMISALASHGQSDEALHLFFQMERSGRKP 382
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDK 130
+ T++++L A + +D G I +D V+ + L+D+
Sbjct: 383 NTITVLAVLGACTHGGFVDEGLQIFNKLDAYGVEAGVEHYGCLVDL-------------- 428
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
L +G +A ++ + M S +P+EV + +L AC
Sbjct: 429 ---------LGRAGKLKEAYEIVNNM---SEEPNEVIWGSLLGAC 461
>gi|255577477|ref|XP_002529617.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530902|gb|EEF32762.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 438
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 99/158 (62%), Gaps = 8/158 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+++VS Y ++ +A+Q FD++ ER+ V W+AMI GY RV EAL++F+EMQ I
Sbjct: 271 SSLVSLYGKCEEIRLAKQVFDEITERNLVCWSAMISGYARVGMVNEALSMFREMQEVGIE 330
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-- 127
DE ++V +++A A ALD+G WI YI K + D+ AL++MY C +EKA+
Sbjct: 331 PDEVSLVGVISACAMAGALDIGRWIHAYIKKRMIHIDLELNTALVNMYAKCGCIEKAKEI 390
Query: 128 ------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159
KD +W++MIVGLAI G + AL+MFS+M A
Sbjct: 391 FDYMPVKDSKAWSSMIVGLAIHGLAEDALEMFSRMEEA 428
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 85/168 (50%), Gaps = 12/168 (7%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDG--YLRVNRFREALTLFQEMQTSNIM-GDEFTIV 76
G ++ AR+ F Q+P + +I G Y + N RE L++ M T + FT+
Sbjct: 178 GDLNYARKIFAQIPNPGIFPYNTIIRGCSYAK-NPSREPYFLYKSMVTRGFPRANTFTMA 236
Query: 77 SILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQK 128
+L A A++ A + G I I ++ + + ++L+ +Y C ++ E ++
Sbjct: 237 FVLKACASIMAFEEGRQIHARILRSGFSLNPYVQSSLVSLYGKCEEIRLAKQVFDEITER 296
Query: 129 DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+ W+ MI G A G ++AL MF +M I+PDEV+ VGV+SAC
Sbjct: 297 NLVCWSAMISGYARVGMVNEALSMFREMQEVGIEPDEVSLVGVISACA 344
>gi|297806919|ref|XP_002871343.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317180|gb|EFH47602.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 511
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 109/187 (58%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M N+DV W A+++ Y RG + A + FD MP ++ WT +I G+ + + EALT+F
Sbjct: 143 MSNRDVPVWNAMITGYQRRGDMKAAMELFDSMPNKNVTSWTTVISGFSQNGNYSEALTMF 202
Query: 61 QEMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
M+ ++ + T+VS+L A ANL L++G ++ Y +N ++I+ NA ++MY
Sbjct: 203 LCMEKDKSVKPNHITLVSVLPACANLGELEIGRRLEGYARENGFFDNIYVRNATLEMYSK 262
Query: 120 CADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C ++ A Q++ SW +MI LA G D+AL++++QML+ +PD V +VG
Sbjct: 263 CGMIDVAKRLFDEIGNQRNLISWNSMIGSLATHGKHDEALELYAQMLQEGERPDAVTFVG 322
Query: 171 VLSACTH 177
+L AC H
Sbjct: 323 LLLACVH 329
>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Vitis vinifera]
Length = 729
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 108/177 (61%), Gaps = 9/177 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN-I 68
TA++ Y G +D AR+ F+ MP R+ V W +MI GY + + A+ LF+EM T+ +
Sbjct: 299 TALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKL 358
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
DE T+VS+++A +L AL+LG W+ ++ +N++K I NA+I MY C +E A++
Sbjct: 359 TPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKR 418
Query: 129 --------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
D S+ T+I G A G+G +A+++ S M I+PD V ++GVL+AC+H
Sbjct: 419 VFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSH 475
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 104/186 (55%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++VI+WTA+V+ Y ++ AR+ FD MPER V W AM+ GY + EAL LF
Sbjct: 189 MPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLF 248
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM + I DE T V++++A ++ L + + + +++ + F AL+DMY
Sbjct: 249 DEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKF 308
Query: 121 ADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVAYVGV 171
D++ A+K + +W +MI G A +G A+++F +M+ A + PDEV V V
Sbjct: 309 GDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSV 368
Query: 172 LSACTH 177
+SAC H
Sbjct: 369 ISACGH 374
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 33/177 (18%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMP--ERDYVLWTAMIDGYLRVNRFREALTL 59
D A++ Y G + AR+ FD++P ER W AM+ GY + +A L
Sbjct: 126 HGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWL 185
Query: 60 FQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
F M N++ T +++T A ++ L E + Y D C+
Sbjct: 186 FDVMPERNVI----TWTAMVTGYAKVKDL---EAARRYFD------------------CM 220
Query: 120 CADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
++ SW M+ G A +G ++AL +F +M+ A I+PDE +V V+SAC+
Sbjct: 221 ------PERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACS 271
Score = 42.7 bits (99), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G ++ A++ F +M RD V + +I G+ EA+ L M+ I
Sbjct: 402 AMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEP 461
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
D T + +LTA ++ L+ G + I + D +A ++D+ ++E A++
Sbjct: 462 DRVTFIGVLTACSHAGLLEEGRKVFESIKDPAI--DHYA--CMVDLLGRVGELEDAKR 515
>gi|255552093|ref|XP_002517091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543726|gb|EEF45254.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 606
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 101/177 (57%), Gaps = 9/177 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV SWT++V+ Y G+++IAR+ FD MP+R+ V W AMI GY + N+ ++A+ LF
Sbjct: 420 MGTKDVFSWTSMVNGYAKTGELEIARKFFDDMPKRNVVSWNAMIAGYSQNNQPKKAIVLF 479
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTY-IDKNKVKNDIFAGNALIDMYCI 119
M ++ E T+V +L+A L LDLG I Y I++ + + NALIDMY
Sbjct: 480 HHMVGEGLIPIENTLVCVLSACGQLGYLDLGRLIHMYHIERKQKGTSVIIANALIDMYAK 539
Query: 120 CADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
C ++ A +D SW +MI A G+ +AL MF QM+ KPD++ +
Sbjct: 540 CGVIDAAARVFNGMPGRDLVSWNSMIAACASHGHAKQALLMFGQMIHEGFKPDDITF 596
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 96/204 (47%), Gaps = 39/204 (19%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
++ Y G + +AR+ FD+ P RD V WT+MIDGY + + +AL LF M S++
Sbjct: 298 GLIHFYSVHGCLVLARKVFDETPARDVVSWTSMIDGYSTHDYYTDALKLFDSMLLSDVEP 357
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--- 127
+E T++S+L+A + L LG+ I Y+ + + + NA++DMY C + A+
Sbjct: 358 NEVTMISVLSACSQKGDLSLGKSIHEYVRRKNLNLSVNLMNAILDMYVKCGCLVAAREIF 417
Query: 128 -----KDKFSWTTMIVGLAISG-------------------------------NGDKALD 151
KD FSWT+M+ G A +G KA+
Sbjct: 418 DSMGTKDVFSWTSMVNGYAKTGELEIARKFFDDMPKRNVVSWNAMIAGYSQNNQPKKAIV 477
Query: 152 MFSQMLRASIKPDEVAYVGVLSAC 175
+F M+ + P E V VLSAC
Sbjct: 478 LFHHMVGEGLIPIENTLVCVLSAC 501
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 77/185 (41%), Gaps = 14/185 (7%)
Query: 6 VISWTAIVSRYI------NRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTL 59
+I+ T VSR + + G + A F+Q+ + +W MI G+ L+
Sbjct: 186 LITHTFPVSRVLAFCALADTGDIRHAHLLFNQIEYPNTYIWNTMIRGFSNAKMPVMGLSF 245
Query: 60 FQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
F +M + D + V L A GE I I K + N LI Y +
Sbjct: 246 FWQMVRERVEMDTRSFVFALKASEQFLTALEGESIHCAIWKIGFPCALLVQNGLIHFYSV 305
Query: 120 CADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
+ E +D SWT+MI G + AL +F ML + ++P+EV + V
Sbjct: 306 HGCLVLARKVFDETPARDVVSWTSMIDGYSTHDYYTDALKLFDSMLLSDVEPNEVTMISV 365
Query: 172 LSACT 176
LSAC+
Sbjct: 366 LSACS 370
>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
Length = 655
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 71/187 (37%), Positives = 107/187 (57%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV SWT++VS Y G ++ A + F ++P R+ V W+ M+ Y + N EA+ +F
Sbjct: 294 MPIKDVYSWTSMVSAYAKCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQANLPEEAMRIF 353
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWI-KTYIDKNKVKNDIFAGNALIDMYCI 119
+M + + + T+VS+L+A A L LD+G + YI +KV+ + NA IDM+
Sbjct: 354 NDMIAAGVEPIDATLVSVLSACAQLGCLDVGRCLYDAYIVSHKVELTVNLSNAFIDMFAK 413
Query: 120 CADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C DV A K+ SW TMIV A+ G ++AL +F + I PDE+ Y+GV
Sbjct: 414 CGDVGAASRLFRNMEDKNVVSWNTMIVAHALHGQSEEALHLFQKFKAIGIFPDEITYIGV 473
Query: 172 LSACTHN 178
LSAC+H+
Sbjct: 474 LSACSHS 480
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 40/214 (18%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+ V+ A+V Y + + AR+ FD+M +RD V WT ++DGY R EA +F M
Sbjct: 164 QSVLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGGLPDEAWRVFCRM 223
Query: 64 QTS-NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ +E T+V+ +A + L LG + + ++ V+ + NAL+DM+ C
Sbjct: 224 VVAGGGWPNEVTLVAAASAAGQIGLLGLGRMVHQCVVESGVRMSVNLENALVDMFGKCGC 283
Query: 123 VEKAQ--------KDKFSWTTMIVGLAISGN----------------------------- 145
V A+ KD +SWT+M+ A G+
Sbjct: 284 VASAKEIFDGMPIKDVYSWTSMVSAYAKCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQA 343
Query: 146 --GDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
++A+ +F+ M+ A ++P + V VLSAC
Sbjct: 344 NLPEEAMRIFNDMIAAGVEPIDATLVSVLSACAQ 377
Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 19/151 (12%)
Query: 37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIV----SILTARANLRALDLGE 92
Y+L T M+ G+LR + AL LF+ + + D TIV + T+ + A+
Sbjct: 98 YMLAT-MMRGFLRAGKPAHALALFRRVLRDRLPADARTIVFAVKAATTSSSPAEAIHCVA 156
Query: 93 WIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKFSWTTMIVGLAISG 144
+ + +I ++ + GNAL+ MY + E A +D SWTT++ G A G
Sbjct: 157 FKRGFIGQS-----VLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGG 211
Query: 145 NGDKALDMFSQMLRASIK-PDEVAYVGVLSA 174
D+A +F +M+ A P+EV V SA
Sbjct: 212 LPDEAWRVFCRMVVAGGGWPNEVTLVAAASA 242
>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Glycine max]
Length = 693
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 99/183 (54%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N D + W+A++ Y G +D AR FDQM +RD V WT MI R E LF++
Sbjct: 252 NLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRD 311
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ S + +E+T +L A A+ A LG+ + Y+ FA +AL+ MY C +
Sbjct: 312 LMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGN 371
Query: 123 V--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
E Q D SWT++IVG A +G D+AL F +L++ KPD+V YVGVLSA
Sbjct: 372 TRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSA 431
Query: 175 CTH 177
CTH
Sbjct: 432 CTH 434
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 105/184 (57%), Gaps = 9/184 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++D+ SW ++ Y G+++ AR+ FD+MP+RD W A I GY+ N+ REAL LF
Sbjct: 148 MGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELF 207
Query: 61 QEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+ MQ ++FT+ S L A A + L LG+ I Y+ + ++ D +AL+D+Y
Sbjct: 208 RVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGK 267
Query: 120 CADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C +++A+ +D SWTTMI G ++ +F ++++ ++P+E + GV
Sbjct: 268 CGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGV 327
Query: 172 LSAC 175
L+AC
Sbjct: 328 LNAC 331
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 16/170 (9%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+A+V Y G +AR+ F++M + D V WT++I GY + + EAL F+ + S
Sbjct: 360 SALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTK 419
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ- 127
D+ T V +L+A + +D G E+ + +K+ + + +ID+ ++A+
Sbjct: 420 PDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAEN 479
Query: 128 --------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRA--SIKPDEVA 167
DKF W +++ G I GN L++ + +A I+P+ A
Sbjct: 480 IIDNMPVKPDKFLWASLLGGCRIHGN----LELAKRAAKALYEIEPENPA 525
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 11/121 (9%)
Query: 44 IDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV 103
+D + R +EA+ L + ++ +++ A RAL+LG + + +
Sbjct: 62 VDVLCQQKRVKEAVEL---LHRTDHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNF 118
Query: 104 KNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQ 155
+F N L+DMY C + AQ +D SW TMIVG A G ++A +F +
Sbjct: 119 VPGVFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDE 178
Query: 156 M 156
M
Sbjct: 179 M 179
>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 106/185 (57%), Gaps = 9/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ SW +V+ Y G +D A+ FD+MP+RD + W AMI GY + + EAL LF
Sbjct: 334 MPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLF 393
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M+ + + + L++ A + AL+LG+ + + K + AGNAL+ MY C
Sbjct: 394 IKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKC 453
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E+A +KD SW TMI G A G G +AL +F M + +IKPD+V VGVL
Sbjct: 454 GSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVL 512
Query: 173 SACTH 177
SAC+H
Sbjct: 513 SACSH 517
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 89/185 (48%), Gaps = 16/185 (8%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D ISW +++ Y G + AR+ F+++P RD WTAM+ G+++ EA +F
Sbjct: 241 MPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIF 300
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EM N + I + ++ +A +L D+ +N + N ++ Y C
Sbjct: 301 EEMPEKNEVSWNAMIAGYVQSQQIEKAREL-------FDQMPSRN-TSSWNTMVTGYAQC 352
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++++A Q+D SW MI G A SG ++AL +F +M R + A L
Sbjct: 353 GNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACAL 412
Query: 173 SACTH 177
S+C
Sbjct: 413 SSCAE 417
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++D+ISW ++S Y+ G + AR F+QMPE+D V W AM+ G+ + EA +F
Sbjct: 117 MPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIF 176
Query: 61 QEMQTSNIMGDEFTIVSILTARA-NLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+M N E + +L+A N R D + +D +I + N L+ Y
Sbjct: 177 DQMLVKN----EISWNGLLSAYVQNGRIEDARRLFDSKMDW-----EIVSWNCLMGGYVR 227
Query: 120 CADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQM 156
++ A+ +DK SW MI G A +G +A +F ++
Sbjct: 228 KKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEEL 272
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 37/177 (20%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ D++ W +S Y+ +GQ + A F+ M R V + AMI GYL N+F A +F++
Sbjct: 57 DSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEK 116
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKN-DIFAGNALIDMYCICA 121
M DL W + VKN ++ A AL +
Sbjct: 117 MPDR----------------------DLISW--NVMLSGYVKNGNLSAARALFN------ 146
Query: 122 DVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+ +KD SW M+ G A +G ++A +F QML +K +E+++ G+LSA N
Sbjct: 147 --QMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQML---VK-NEISWNGLLSAYVQN 197
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 16/164 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ + +++ A++S Y++ + D AR+ F++MP+RD + W M+ GY++ A LF
Sbjct: 86 MRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALF 145
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M E +VS + E + D+ VKN+I + N L+ Y
Sbjct: 146 NQMP-------EKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEI-SWNGLLSAYVQN 197
Query: 121 ADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQM 156
+E A++ + SW ++ G D A +F +M
Sbjct: 198 GRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRM 241
>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 106/185 (57%), Gaps = 9/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ SW +V+ Y G +D A+ FD+MP+RD + W AMI GY + + EAL LF
Sbjct: 334 MPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLF 393
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M+ + + + L++ A + AL+LG+ + + K + AGNAL+ MY C
Sbjct: 394 IKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKC 453
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E+A +KD SW TMI G A G G +AL +F M + +IKPD+V VGVL
Sbjct: 454 GSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVL 512
Query: 173 SACTH 177
SAC+H
Sbjct: 513 SACSH 517
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 89/185 (48%), Gaps = 16/185 (8%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D ISW +++ Y G + AR+ F+++P RD WTAM+ G+++ EA +F
Sbjct: 241 MPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIF 300
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EM N + I + ++ +A +L D+ +N + N ++ Y C
Sbjct: 301 EEMPEKNEVSWNAMIAGYVQSQQIEKAREL-------FDQMPSRN-TSSWNTMVTGYAQC 352
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++++A Q+D SW MI G A SG ++AL +F +M R + A L
Sbjct: 353 GNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACAL 412
Query: 173 SACTH 177
S+C
Sbjct: 413 SSCAE 417
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++D+ISW ++S Y+ G + AR F+QMPE+D V W AM+ G+ + EA +F
Sbjct: 117 MPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIF 176
Query: 61 QEMQTSNIMGDEFTIVSILTARA-NLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+M N E + +L+A N R D + +D +I + N L+ Y
Sbjct: 177 DQMLVKN----EISWNGLLSAYVQNGRIEDARRLFDSKMDW-----EIVSWNCLMGGYVR 227
Query: 120 CADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQM 156
++ A+ +DK SW MI G A +G +A +F ++
Sbjct: 228 KKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEEL 272
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 37/177 (20%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ D++ W +S Y+ +GQ + A F+ M R V + AMI GYL N+F A +F++
Sbjct: 57 DSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEK 116
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKN-DIFAGNALIDMYCICA 121
M DL W + VKN ++ A AL +
Sbjct: 117 MPDR----------------------DLISW--NVMLSGYVKNGNLSAARALFN------ 146
Query: 122 DVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+ +KD SW M+ G A +G ++A +F QML +K +E+++ G+LSA N
Sbjct: 147 --QMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQML---VK-NEISWNGLLSAYVQN 197
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 16/164 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ + +++ A++S Y++ + D AR+ F++MP+RD + W M+ GY++ A LF
Sbjct: 86 MRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALF 145
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M E +VS + E + D+ VKN+I + N L+ Y
Sbjct: 146 NQMP-------EKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEI-SWNGLLSAYVQN 197
Query: 121 ADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQM 156
+E A++ + SW ++ G D A +F +M
Sbjct: 198 GRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRM 241
>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
Length = 619
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 106/192 (55%), Gaps = 15/192 (7%)
Query: 1 MKNKDVISWTAIVSRYINRGQ----VDIARQC---FDQMPERDYVLWTAMIDGYLRVNRF 53
+ K+V +WTAI+S YI G+ +D+ R+ FD M E+D V W++MI GY
Sbjct: 169 IPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLP 228
Query: 54 REALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNAL 113
+EAL LF +M D + +V +L A A L AL+LG W +D+N+ + G AL
Sbjct: 229 KEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMDRNEFLGNPVLGTAL 288
Query: 114 IDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165
IDMY C ++ A +KD W I GLA+SG+ A +F QM ++ I+PD
Sbjct: 289 IDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDG 348
Query: 166 VAYVGVLSACTH 177
+VG+L ACTH
Sbjct: 349 NTFVGLLCACTH 360
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 84/206 (40%), Gaps = 46/206 (22%)
Query: 17 INRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIV 76
N G + + + F Q E + L+ MI G + + F+E++ ++ M+ + D FT
Sbjct: 53 FNFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFP 112
Query: 77 SILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA---------- 126
+L A A L LG + + K ++D F +L+ +Y C ++ A
Sbjct: 113 FLLKACARLLDSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEK 172
Query: 127 ------------------------------------QKDKFSWTTMIVGLAISGNGDKAL 150
+KD SW++MI G A +G +AL
Sbjct: 173 NVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEAL 232
Query: 151 DMFSQMLRASIKPDEVAYVGVLSACT 176
D+F +ML +PD A VGVL AC
Sbjct: 233 DLFFKMLNEGFRPDCYAMVGVLCACA 258
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ Y G++D A + F M ++D V+W A I G + A LF +M+ S I
Sbjct: 286 TALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIE 345
Query: 70 GDEFTIVSILTARANLRALDLG 91
D T V +L A + +D G
Sbjct: 346 PDGNTFVGLLCACTHAGLVDEG 367
>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
Length = 638
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 66/185 (35%), Positives = 101/185 (54%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K V+SWT+++ G V+ AR FD MPER+ V W AMI Y++ + EAL L+
Sbjct: 274 MPIKSVVSWTSMLCAQTKHGSVNAARCWFDHMPERNIVSWNAMISCYVQRGQCHEALDLY 333
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+MQ+ + DE T+V++L+A + L +G+ + YI N D+ N+L+DMY C
Sbjct: 334 NQMQSQGLAPDEITLVAVLSASGRIGDLTVGKMVHLYIRDNIYNPDVSLVNSLLDMYAKC 393
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
V+ A ++ SW +I GLA+ G + F M+ S PD + +V +L
Sbjct: 394 GQVDTAISLFSEMCNRNVVSWNVIIGGLAMHGRALDTITFFRSMVTDSFAPDGITFVALL 453
Query: 173 SACTH 177
SAC+H
Sbjct: 454 SACSH 458
Score = 92.4 bits (228), Expect = 7e-17, Method: Composition-based stats.
Identities = 57/203 (28%), Positives = 93/203 (45%), Gaps = 39/203 (19%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y + G + +R+ FD+M +R+ V W +MI GY + RE +LF EM+ +
Sbjct: 152 ALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIGGYAQAGDTREVCSLFGEMRRQGFLE 211
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA---- 126
DEFT+VS+L A + L++G + + + + D+ +AL+DMY C D+ A
Sbjct: 212 DEFTLVSLLIACSQEGNLEIGRLVHCRMLVSGSRVDLILESALVDMYGKCGDLWMARRCF 271
Query: 127 -----------------------------------QKDKFSWTTMIVGLAISGNGDKALD 151
+++ SW MI G +ALD
Sbjct: 272 EMMPIKSVVSWTSMLCAQTKHGSVNAARCWFDHMPERNIVSWNAMISCYVQRGQCHEALD 331
Query: 152 MFSQMLRASIKPDEVAYVGVLSA 174
+++QM + PDE+ V VLSA
Sbjct: 332 LYNQMQSQGLAPDEITLVAVLSA 354
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 8/161 (4%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
AR+ FD +P D V++ +I Y + REAL L + M I+ +EFT+ ++ A
Sbjct: 65 ARRLFDGIPGPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLPFVVKACTI 124
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKFSWTTM 136
+A + + + + +F GNAL+ Y + E ++ SW +M
Sbjct: 125 AQAREHALAVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSM 184
Query: 137 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
I G A +G+ + +F +M R DE V +L AC+
Sbjct: 185 IGGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQ 225
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 25/173 (14%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N DV +++ Y GQVD A F +M R+ V W +I G R + +T F+
Sbjct: 377 NPDVSLVNSLLDMYAKCGQVDTAISLFSEMCNRNVVSWNVIIGGLAMHGRALDTITFFRS 436
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M T + D T V++L+A ++ L+ G+ Y + ++ +Y + +
Sbjct: 437 MVTDSFAPDGITFVALLSACSHGGLLETGQ---HYFE------------SMRHVYNVKHE 481
Query: 123 VEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
VE + M+ L G+ +KA+ + +M +KPD V + +L AC
Sbjct: 482 VEH-------YACMVDLLGRRGHLEKAVCLIKEM---PMKPDVVVWGALLGAC 524
>gi|302142753|emb|CBI19956.3| unnamed protein product [Vitis vinifera]
Length = 446
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 101/185 (54%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ +W++++S Y +G V AR FD++P R+ V W ++I GY + EAL F
Sbjct: 121 MPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAF 180
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+MQ DE TI S+L+A + L LD G+ I ++ +K + F N L+DMY C
Sbjct: 181 GKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKC 240
Query: 121 ADVEK--------AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
D+ A +++ W +MI G AI G +AL+ F +M + PDE+ ++ VL
Sbjct: 241 GDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVL 300
Query: 173 SACTH 177
SAC H
Sbjct: 301 SACAH 305
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 33/201 (16%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T++V Y G V +R+ FD MPER+ V W AMI GYL + A+ LF++M +
Sbjct: 4 TSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAV 63
Query: 70 ------------GD-------------EFTIVSILTARANLRALDLGEWIKTYIDKNKVK 104
GD E V T + A + + + +
Sbjct: 64 TWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEGMPQ 123
Query: 105 NDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQM 156
+ FA +++I YC +V++A+ ++ +W ++I G A +G ++AL+ F +M
Sbjct: 124 RNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKM 183
Query: 157 LRASIKPDEVAYVGVLSACTH 177
+PDEV VLSAC+
Sbjct: 184 QAEGFEPDEVTIASVLSACSQ 204
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 26/166 (15%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+V Y G + AR F+ M R+ W +MI G+ + +EAL F M+ S+
Sbjct: 231 NGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEG 290
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
DE T +S+L+A A+ ++ G I + ++K + I LID+
Sbjct: 291 PDEITFLSVLSACAHGGFVNAGLEIFSRMEKYGLTTGIKHYGCLIDL------------- 337
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
L +G +A D+ +M +KP++V + +L AC
Sbjct: 338 ----------LGRAGRIKEAYDLIKRM---PVKPNDVVWGALLGAC 370
>gi|242061934|ref|XP_002452256.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
gi|241932087|gb|EES05232.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
Length = 590
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 67/184 (36%), Positives = 101/184 (54%), Gaps = 11/184 (5%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+SW +VS Y G ++ AR+ F +MPER V W+AMID +R F EAL +F +M
Sbjct: 148 DVVSWNTMVSGYGKCGDLEAAREVFVRMPERGLVSWSAMIDACVRTGEFSEALRVFDQMT 207
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV---KNDIFAGNALIDMYCICA 121
+ D +VS+L A+L AL+ G W+ ++ ++ ++ AL+DMYC C
Sbjct: 208 GNGFKPDAVVLVSVLKTCAHLGALERGRWVHRFLKAERLGGRPGNVMLETALVDMYCKCG 267
Query: 122 DVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+ +A D W MI GLA++G+G +AL++F +ML P+E +V L
Sbjct: 268 CMNEAWWVFDGVQSHDVVLWNAMIGGLAMNGHGKRALELFRRMLDKGFVPNESTFVVALC 327
Query: 174 ACTH 177
AC H
Sbjct: 328 ACIH 331
Score = 44.3 bits (103), Expect = 0.021, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 42/88 (47%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+V+ TA+V Y G ++ A FD + D VLW AMI G + AL LF+ M
Sbjct: 252 NVMLETALVDMYCKCGCMNEAWWVFDGVQSHDVVLWNAMIGGLAMNGHGKRALELFRRML 311
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGE 92
+ +E T V L A + +D GE
Sbjct: 312 DKGFVPNESTFVVALCACIHTGRVDEGE 339
>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
Length = 710
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 111/181 (61%), Gaps = 8/181 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++DV+S+TA+++ Y +RG ++ A++ FD++P +D V W A+I GY +EAL LF+E
Sbjct: 166 HRDVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKE 225
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M +N+ DE T+V++++A A ++ LG + ++ID + + +++ NALID+Y C +
Sbjct: 226 MMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGE 285
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
VE A KD SW TMI G +AL +F +MLR+ P++V + +L A
Sbjct: 286 VETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPA 345
Query: 175 C 175
C
Sbjct: 346 C 346
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 100/178 (56%), Gaps = 10/178 (5%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G+V+ A F + +D + W MI GY +N ++EAL LFQEM S
Sbjct: 275 ALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENP 334
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDK--NKVKNDIFAGNALIDMYCICADVEKA-- 126
++ T++SIL A A L A+D G WI YIDK V N +LIDMY C D+E A
Sbjct: 335 NDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQ 394
Query: 127 ------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+ + MI G A+ G + A D+FS+M + I+PD++ +VG+LSAC+H+
Sbjct: 395 VFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHS 452
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 39/186 (20%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88
F+ + E + ++W M G+ + A+ L+ M + ++ + +T +L + A L+
Sbjct: 60 FETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVS 119
Query: 89 DLGEWIKTYI--------------------------DKNKV-----KNDIFAGNALIDMY 117
G+ I ++ D +KV D+ + ALI Y
Sbjct: 120 KEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGY 179
Query: 118 CICADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
+E AQK D SW +I G A +GN +ALD+F +M++ ++KPDE V
Sbjct: 180 ASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMV 239
Query: 170 GVLSAC 175
V+SAC
Sbjct: 240 TVVSAC 245
>gi|242081563|ref|XP_002445550.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
gi|241941900|gb|EES15045.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
Length = 595
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 71/185 (38%), Positives = 106/185 (57%), Gaps = 10/185 (5%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+D + T++++ Y NRG D AR+ F +MP RD V W +I R R ++AL LF+EM
Sbjct: 152 RDALLATSLMACYANRGDGDGARKLFGEMPARDAVAWNVLISCCARNRRTKDALKLFEEM 211
Query: 64 Q--TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
+ S D+ T + +L A +L ALD GE + Y +++ + N+LI MY C
Sbjct: 212 RGRDSGAEPDDVTCILLLQACTSLGALDFGEQVWAYAEEHGYGAKLKVRNSLIAMYSRCG 271
Query: 122 DVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
V+KA QK +W+ MI GLA +G GD A+ F +M+R+ + PDE + GVLS
Sbjct: 272 CVDKAYRVFCGTPQKSVVTWSAMISGLAANGFGDDAISAFEEMIRSDVAPDEQTFTGVLS 331
Query: 174 ACTHN 178
AC+H+
Sbjct: 332 ACSHS 336
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 13/159 (8%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRF-REALTLFQEMQTSNIM 69
++++ Y G VD A + F P++ V W+AMI G L N F +A++ F+EM S++
Sbjct: 262 SLIAMYSRCGCVDKAYRVFCGTPQKSVVTWSAMISG-LAANGFGDDAISAFEEMIRSDVA 320
Query: 70 GDEFTIVSILTARANLRALDLG----EWIK-TYIDKNKVKN-----DIFAGNALID-MYC 118
DE T +L+A ++ +D G + ++ Y K V++ D+ L+D Y
Sbjct: 321 PDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYE 380
Query: 119 ICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQML 157
+ + K D W T++ I G+ D + S ++
Sbjct: 381 LVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVISNLI 419
>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
Length = 907
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 102/182 (56%), Gaps = 8/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ S ++V+ Y G ++ + FD+M RD V W A++ G+ + +AL LF EM+
Sbjct: 382 DIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMR 441
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ D T+VS+L A A++ AL G+WI ++ K+ + I AL+DMY C D+
Sbjct: 442 KARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLG 501
Query: 125 KAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
AQK D SW+++I G G G+ AL M+S L I+P+ V Y+ +LSAC+
Sbjct: 502 SAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACS 561
Query: 177 HN 178
HN
Sbjct: 562 HN 563
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 99/174 (56%), Gaps = 8/174 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T+++ Y+ G V+ A + F+ M +D + WTAMI G ++ + A+T+F+ M S +M
Sbjct: 286 TSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVM 345
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK---- 125
TI S+L A A L + LG + YI + ++K DI + N+L+ MY C +E+
Sbjct: 346 PSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSV 405
Query: 126 ----AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+++D SW ++ G A +G+ KAL +F++M +A +PD + V +L AC
Sbjct: 406 FDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQAC 459
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 91/181 (50%), Gaps = 8/181 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
DV ++++ Y G+V+ A+ F+ M RD + W +++ GY ++ RE L L
Sbjct: 178 GSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIR 237
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M+T I D+ T S+++A A L +G+ + +I + ++ D +LI MY C +
Sbjct: 238 MKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGN 297
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
V A KD SWT MI GL + D A+ +F +ML++ + P VL+A
Sbjct: 298 VNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAA 357
Query: 175 C 175
C
Sbjct: 358 C 358
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 84/173 (48%), Gaps = 11/173 (6%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T++++ Y G AR+ FD M +R+ V WT MI Y R A +++ M+ I
Sbjct: 87 TSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQ 146
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-- 127
T++ +L+ L L + + + + +D+ N+++++YC C VE AQ
Sbjct: 147 PSSVTMLGLLSGVLELVHL---QCLHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQAL 203
Query: 128 ------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+D SW +++ G A GN + L + +M I+PD+ + ++SA
Sbjct: 204 FELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSA 256
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G + A++CFD+MP++D V W+++I GY + AL ++ + + I
Sbjct: 488 TALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQ 547
Query: 70 GDEFTIVSILTARANLRALDLG 91
+ +SIL+A ++ +D G
Sbjct: 548 PNHVIYLSILSACSHNGLVDQG 569
>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like, partial [Vitis vinifera]
Length = 621
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 100/181 (55%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + W+A+ Y G + AR FD+ +RD V WTAMID Y + R E LF ++
Sbjct: 256 DGVVWSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLL 315
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
S I +EFT +L A A+ A +LG+ + Y+ + FA + L+ MY C +++
Sbjct: 316 KSGIWPNEFTFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIK 375
Query: 125 KAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A++ D SWT++I G A +G D+AL F +L++ +PD + +VGVLSACT
Sbjct: 376 NARRVFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACT 435
Query: 177 H 177
H
Sbjct: 436 H 436
Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 103/184 (55%), Gaps = 9/184 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D+ SW ++S Y G++ AR+ FDQM ERD WTAM GY+R ++ EAL LF
Sbjct: 150 MAERDLCSWNIMISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEALELF 209
Query: 61 QEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+ MQ N ++FT+ S L A A +++L LG+ I +I + + D +AL DMY
Sbjct: 210 RAMQRHENFKCNKFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDMYGK 269
Query: 120 CADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C + +A+ +D SWT MI G ++ +FS +L++ I P+E + GV
Sbjct: 270 CGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTFSGV 329
Query: 172 LSAC 175
L+AC
Sbjct: 330 LNAC 333
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 10/146 (6%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+ +V Y G + AR+ F+ MP D V WT++I GY + + EAL F+ + S
Sbjct: 362 STLVHMYTKCGNIKNARRVFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQ 421
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA-- 126
D T V +L+A + +D G E+ + +K+ + + LID+ +++A
Sbjct: 422 PDHITFVGVLSACTHAGLVDKGLEYFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEAED 481
Query: 127 -------QKDKFSWTTMIVGLAISGN 145
+ DKF W +++ G I GN
Sbjct: 482 IIDKMPIEPDKFLWASLLGGCRIHGN 507
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 12/121 (9%)
Query: 44 IDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV 103
ID R REA+ + + + T ++L LRALD G + + +
Sbjct: 65 IDILCEQKRLREAIQILDHVDRPSAA----TYSTLLQLCLQLRALDEGMKVHAHTKTSGF 120
Query: 104 KNDIFAGNALIDMYCICADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQ 155
+ N ++DMY C + E A++D SW MI G A +G +A +F Q
Sbjct: 121 VPGVVISNRILDMYIKCNSLVNAKRLFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQ 180
Query: 156 M 156
M
Sbjct: 181 M 181
>gi|356554965|ref|XP_003545811.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Glycine max]
Length = 517
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 113/189 (59%), Gaps = 12/189 (6%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++++++SW ++ I G+V++A F+QMP R V WT +IDGY R N+ +ALTLF
Sbjct: 198 MQHRNLVSWNVFITGLIKLGEVELACSVFNQMPARSVVSWTLVIDGYTRRNQPIKALTLF 257
Query: 61 QEM-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKN-DIFAGNALIDMYC 118
++M + I E T+++I A AN+ + + + + Y++K D+ NAL+D+Y
Sbjct: 258 RKMIEVDGIEPTEVTLLTIFPAIANIGCIKICQSVHGYVEKRGFNAFDVRITNALLDLYA 317
Query: 119 ICA----------DVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
C ++ +++ SWT+ I G A++G G +AL+ F M +A ++P+ V +
Sbjct: 318 KCGCIASVSRFFQEIPDQRRNLVSWTSTISGFAMNGMGREALESFESMEKAGLRPNHVTF 377
Query: 169 VGVLSACTH 177
+GVLSAC+H
Sbjct: 378 LGVLSACSH 386
>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
Length = 752
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 106/185 (57%), Gaps = 9/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V++W A+++ Y+ VD A F +MPE++ + WT +I+GY+R+ + EA L
Sbjct: 146 MPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLL 205
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M N D+ T L++ A+L AL +G+ + + K+ D+F NALI MY C
Sbjct: 206 NQMPYRN-KPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKC 264
Query: 121 ADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ A+ D SW ++I A++GNG +AL +F +M + PDEV +VG+L
Sbjct: 265 GSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGIL 324
Query: 173 SACTH 177
SAC+H
Sbjct: 325 SACSH 329
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 94/185 (50%), Gaps = 17/185 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD++SW ++++ Y G++ + Q F++M ERD V W M+DG++ V + F
Sbjct: 53 MPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFF 112
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY--- 117
+++ N + + V++L A R + E + D+ ++N + A NA+I Y
Sbjct: 113 EKIPNPNTV----SWVTMLCGFA--RFGKIAE-ARRLFDQMPIRN-VVAWNAMIAAYVQN 164
Query: 118 -----CICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
I +E +K+ SWTT+I G G D+A + +QM + KPD+ + L
Sbjct: 165 CHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRN-KPDQSTFACGL 223
Query: 173 SACTH 177
S+C H
Sbjct: 224 SSCAH 228
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ A+++ Y G + A F + D V W ++I Y REAL LF +M+
Sbjct: 250 DLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKME 309
Query: 65 TSNIMGDEFTIVSILTARANLRALDLG 91
+ DE T V IL+A +++ +D G
Sbjct: 310 VEGVAPDEVTFVGILSACSHVGLIDQG 336
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 17/154 (11%)
Query: 12 IVSRYINRGQVDIARQCFDQMPER-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y G++ AR F+ +P + + V AM+ GY + +F EA LF M +++
Sbjct: 1 MITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLV- 59
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA---- 126
+ S+LT + LG + + D+ + N ++D + D+ +
Sbjct: 60 ---SWNSMLTGYTRNGEMRLG----LQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFF 112
Query: 127 ----QKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
+ SW TM+ G A G +A +F QM
Sbjct: 113 EKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQM 146
>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 69/186 (37%), Positives = 106/186 (56%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++SW+ +V Y G +D+AR FD+ P ++ VLWT +I GY REA L+
Sbjct: 245 MPQRNIVSWSTMVCGYSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYAEKGFVREATELY 304
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY--C 118
+M+ + + D+ ++SIL A A L LG+ I + + + + NA IDMY C
Sbjct: 305 GKMEEAGLRPDDGFLISILAACAESGMLGLGKRIHASMRRWRFRCGTKVLNAFIDMYAKC 364
Query: 119 ICADVE-------KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C D A+KD SW +MI G A+ G+G+KAL++FS+M+ +PD +VG+
Sbjct: 365 GCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSRMVPEGFEPDTYTFVGL 424
Query: 172 LSACTH 177
L ACTH
Sbjct: 425 LCACTH 430
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 45/178 (25%), Positives = 84/178 (47%), Gaps = 31/178 (17%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK +DV++W +++ + G+++ A + FD+MPERD V W M+DGY + A LF
Sbjct: 183 MKERDVVTWNSMIGGLVRCGELEGACKLFDEMPERDMVSWNTMLDGYAKAGEMDRAFELF 242
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M NI+ + +++ + +D+ + D+ KN +
Sbjct: 243 ERMPQRNIV----SWSTMVCGYSKGGDMDMA---RVLFDRCPAKNVVL------------ 283
Query: 121 ADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
WTT+I G A G +A +++ +M A ++PD+ + +L+AC +
Sbjct: 284 ------------WTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAACAES 329
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 13/144 (9%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTL--FQEMQTSNIMGDEFTIVSILTAR 82
A F+ +P + L+ ++I + N +L F +MQ + + D FT +L A
Sbjct: 72 AVNVFNHVPHPNVHLYNSIIRAHAH-NTSHPSLPFNAFFQMQKNGLFPDNFTYPFLLKAC 130
Query: 83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD----------VEKAQKDKFS 132
+L L I +++K DIF N+LID Y C + ++D +
Sbjct: 131 TGPSSLPLVRMIHAHVEKFGFYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVT 190
Query: 133 WTTMIVGLAISGNGDKALDMFSQM 156
W +MI GL G + A +F +M
Sbjct: 191 WNSMIGGLVRCGELEGACKLFDEM 214
>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Vitis vinifera]
Length = 732
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 102/182 (56%), Gaps = 8/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ S ++V+ Y G ++ + FD+M RD V W A++ G+ + +AL LF EM+
Sbjct: 382 DIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMR 441
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ D T+VS+L A A++ AL G+WI ++ K+ + I AL+DMY C D+
Sbjct: 442 KARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLG 501
Query: 125 KAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
AQK D SW+++I G G G+ AL M+S L I+P+ V Y+ +LSAC+
Sbjct: 502 SAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACS 561
Query: 177 HN 178
HN
Sbjct: 562 HN 563
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 99/174 (56%), Gaps = 8/174 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T+++ Y+ G V+ A + F+ M +D + WTAMI G ++ + A+T+F+ M S +M
Sbjct: 286 TSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVM 345
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK---- 125
TI S+L A A L + LG + YI + ++K DI + N+L+ MY C +E+
Sbjct: 346 PSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSV 405
Query: 126 ----AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+++D SW ++ G A +G+ KAL +F++M +A +PD + V +L AC
Sbjct: 406 FDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQAC 459
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 91/181 (50%), Gaps = 8/181 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
DV ++++ Y G+V+ A+ F+ M RD + W +++ GY ++ RE L L
Sbjct: 178 GSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIR 237
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M+T I D+ T S+++A A L +G+ + +I + ++ D +LI MY C +
Sbjct: 238 MKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGN 297
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
V A KD SWT MI GL + D A+ +F +ML++ + P VL+A
Sbjct: 298 VNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAA 357
Query: 175 C 175
C
Sbjct: 358 C 358
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 84/173 (48%), Gaps = 11/173 (6%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T++++ Y G AR+ FD M +R+ V WT MI Y R A +++ M+ I
Sbjct: 87 TSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQ 146
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-- 127
T++ +L+ L L + + + + +D+ N+++++YC C VE AQ
Sbjct: 147 PSSVTMLGLLSGVLELVHL---QCLHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQAL 203
Query: 128 ------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+D SW +++ G A GN + L + +M I+PD+ + ++SA
Sbjct: 204 FELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSA 256
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G + A++CFD+MP++D V W+++I GY + AL ++ + + I
Sbjct: 488 TALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQ 547
Query: 70 GDEFTIVSILTARANLRALDLG 91
+ +SIL+A ++ +D G
Sbjct: 548 PNHVIYLSILSACSHNGLVDQG 569
>gi|413944077|gb|AFW76726.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
Length = 646
Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 71/186 (38%), Positives = 105/186 (56%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV SWT++VS Y G ++ A + F ++P R+ V W+ M+ Y N EA+ +F
Sbjct: 294 MPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIF 353
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWI-KTYIDKNKVKNDIFAGNALIDMYCI 119
+M + + + T+VS+L+A A L +LD+G W+ TYI +KV+ NA IDM+
Sbjct: 354 NDMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAK 413
Query: 120 CADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C DV A K+ SW TMI+ + G ++AL +F + I PDE Y+GV
Sbjct: 414 CGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGV 473
Query: 172 LSACTH 177
LSAC+H
Sbjct: 474 LSACSH 479
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 59/214 (27%), Positives = 98/214 (45%), Gaps = 40/214 (18%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+ V++ A+V Y + + AR+ FD+M +RD V WT +IDGY R EA +F M
Sbjct: 164 QSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRM 223
Query: 64 QTS-NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ ++ +E T+V+ +A + L LG + I ++ + + NAL+DM+ C
Sbjct: 224 VVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGC 283
Query: 123 VEKAQ--------KDKFSWTTMIVGLAISGN----------------------------- 145
V A+ KD +SWT+M+ A G+
Sbjct: 284 VAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHA 343
Query: 146 --GDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
D+A+ +F+ M+ A ++P + V VLSAC
Sbjct: 344 NMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQ 377
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 51/151 (33%), Positives = 76/151 (50%), Gaps = 19/151 (12%)
Query: 37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN----LRALDLGE 92
Y+L T M+ G+LR + ALTLF+ + + D TIV + A A A+
Sbjct: 98 YMLAT-MMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFAVKAAATSSSPTEAIHCVA 156
Query: 93 WIKTYIDKNKVKNDIFAGNALIDMYC---ICADVEK-----AQKDKFSWTTMIVGLAISG 144
+ + +I ++ + AGNAL+ MY + D K A +D SWTT+I G A G
Sbjct: 157 FKRGFIGQS-----VLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGG 211
Query: 145 NGDKALDMFSQMLRA-SIKPDEVAYVGVLSA 174
D+A +F +M+ A S+ P+EV V SA
Sbjct: 212 LPDEAWRVFCRMVVAESVWPNEVTLVAAASA 242
>gi|357112521|ref|XP_003558057.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 656
Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 70/182 (38%), Positives = 106/182 (58%), Gaps = 9/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D SW ++++ Y+ G V A F MP +D V W+ +I G ++ N+ +ALT+F MQ
Sbjct: 331 DQYSWNSMIAGYLKNGHVKDAMALFSAMPNKDNVSWSTVISGCVQNNQSSDALTVFDNMQ 390
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
I DE TIVS+++A NL AL+ G+ + YI +N+ + G +LI+MY C +E
Sbjct: 391 AQGIRPDEVTIVSVISACTNLSALEKGKSVHEYIKQNQYYVSLVLGTSLINMYMKCGCLE 450
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVAYVGVLSAC 175
A +K W +IVGLA++G K+LDMFS+M + + P+E+ + GVLSAC
Sbjct: 451 AALEAFNIMEEKGTPCWNAVIVGLAMNGLVMKSLDMFSEMEASDTATPNEITFTGVLSAC 510
Query: 176 TH 177
H
Sbjct: 511 RH 512
Score = 93.2 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 59/186 (31%), Positives = 94/186 (50%), Gaps = 12/186 (6%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ + +++VS + RG VD AR+ FD RD WTAMI + R + F EAL +F
Sbjct: 195 MPKRNATAVSSMVSLFGRRGMVDEARRVFDAAECRDIFTWTAMISCFERNDMFAEALHVF 254
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M+ DE +VS+++A A + G+ + + + + + NALI MY C
Sbjct: 255 SCMRRERWHVDEPLMVSVVSACAQSEVIQNGQMCHGLVIRAGLCSQVNVQNALIHMYSSC 314
Query: 121 ADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
DV A++ D++SW +MI G +G+ A+ +FS M D V++ V+
Sbjct: 315 LDVFAARRLFDSGECLDQYSWNSMIAGYLKNGHVKDAMALFSAM----PNKDNVSWSTVI 370
Query: 173 SACTHN 178
S C N
Sbjct: 371 SGCVQN 376
Score = 42.0 bits (97), Expect = 0.10, Method: Composition-based stats.
Identities = 38/154 (24%), Positives = 59/154 (38%), Gaps = 31/154 (20%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
AR+ FD P D V W ++ Y+ +A+ +F +M N T VS + +
Sbjct: 157 ARRVFDAGPVWDAVSWNTILAAYVHAGDVDQAVEVFAQMPKRNA-----TAVSSMVS--- 208
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISG 144
+F ++D D + +D F+WT MI +
Sbjct: 209 ----------------------LFGRRGMVDEARRVFDAAEC-RDIFTWTAMISCFERND 245
Query: 145 NGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+AL +FS M R DE V V+SAC +
Sbjct: 246 MFAEALHVFSCMRRERWHVDEPLMVSVVSACAQS 279
Score = 37.7 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK-- 128
D +T + A A+ + + G + + + ++++ NALI MY C + A++
Sbjct: 102 DSYTHPILAAACASRKDVIEGRQVHAHAVSHGFGDNLYLRNALIFMYSACGCLWDARRVF 161
Query: 129 ------DKFSWTTMIVGLAISGNGDKALDMFSQM 156
D SW T++ +G+ D+A+++F+QM
Sbjct: 162 DAGPVWDAVSWNTILAAYVHAGDVDQAVEVFAQM 195
>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 109/186 (58%), Gaps = 14/186 (7%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +KD ++ +++ Y + A + F+ MPE+D V W ++I+G+ + EALTL+
Sbjct: 41 MPHKDTVTLDTMITAYF-----ESAYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLY 95
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M + + D FT+VS+L+A A L L LG Y+ K + ++ A NAL+D+Y C
Sbjct: 96 KRMGSEGVEPDGFTMVSLLSACAELATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKC 155
Query: 121 ADVEKAQK---------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
+ +A+K + SWT++IVGLA++G G +AL+ F M R + P E+ +VGV
Sbjct: 156 GTISEARKIFDEMGIERNVVSWTSLIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGV 215
Query: 172 LSACTH 177
L AC+H
Sbjct: 216 LYACSH 221
>gi|218189594|gb|EEC72021.1| hypothetical protein OsI_04901 [Oryza sativa Indica Group]
Length = 589
Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 67/185 (36%), Positives = 104/185 (56%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++D++ W +++ Y G++D AR F++MPER+ + W+ +IDGY+R EAL F
Sbjct: 239 MPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFF 298
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
Q M + I D V + A A L AL+ G W+ +Y++K KV D+ ALIDMY C
Sbjct: 299 QRMLSCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKC 358
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ A +K +W MIVGL G G A+ +F+QM D+++ + VL
Sbjct: 359 GRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSVLAVL 418
Query: 173 SACTH 177
++CTH
Sbjct: 419 TSCTH 423
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 7/110 (6%)
Query: 54 REALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNAL 113
R +L F M+ + D +T ++L A +G + + + D+F NAL
Sbjct: 98 RRSLLYFSRMRRVAVAPDAYTFPAVLKACGCAPGCRVGLVVHGEAVRTGLDADLFTRNAL 157
Query: 114 IDMYCICADVEKAQK-------DKFSWTTMIVGLAISGNGDKALDMFSQM 156
I YC D +K D SW +M+ G G D A D+F +M
Sbjct: 158 ISFYCRIGDCRSGRKVFDHGVRDLVSWNSMVAGYVGCGEVDLAQDLFDEM 207
>gi|147846621|emb|CAN83751.1| hypothetical protein VITISV_040023 [Vitis vinifera]
Length = 496
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 108/185 (58%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++S +++ ++ G V+ A F +MP RD V W +M+ Y + + EAL LF
Sbjct: 122 MPERNLVSXNSMLXGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALF 181
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M + E T+VS+L+A A+L ALD G + TYI+ N+++ + G AL+DMY C
Sbjct: 182 DQMXAVGVKPSEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKC 241
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ A KD +W T+I G+AI G+ +A +F +M A ++P+++ +V +L
Sbjct: 242 GKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITFVAML 301
Query: 173 SACTH 177
SAC+H
Sbjct: 302 SACSH 306
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%)
Query: 7 ISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTS 66
I TA+V Y G++ +A Q F+ M +D + W +I G + +EA LF+EM+ +
Sbjct: 229 IVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEA 288
Query: 67 NIMGDEFTIVSILTARANLRALDLGE 92
+ ++ T V++L+A ++ +D G+
Sbjct: 289 GVEPNDITFVAMLSACSHAGMVDEGQ 314
>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 642
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 104/185 (56%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NK+VISW ++ YI G + AR FDQMP ++ V W+ MI GY R + +AL LF
Sbjct: 286 MPNKNVISWGIMLDGYIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELF 345
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ + +I DE I+ I++A + L +D E I + +D+ +LIDMY C
Sbjct: 346 ERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLSDLRVFTSLIDMYAKC 405
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+EKA KD ++TMI LA G G A+ +F +M RA+IKPD V ++GVL
Sbjct: 406 GSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVL 465
Query: 173 SACTH 177
+AC H
Sbjct: 466 TACNH 470
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 101/209 (48%), Gaps = 33/209 (15%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD++SW ++S Y N +VDIAR+ FD+MPER+ V WT+MI GY++ EA LF
Sbjct: 162 MCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLF 221
Query: 61 QEMQTS-----NIMGDEFT-IVSILTAR---ANLRALDLGEW---------------IKT 96
M N+M + I + AR + D G W K
Sbjct: 222 DSMPVKDLASWNVMVSGYMDIGDCVNARIIFGKMPIHDTGSWNIMISGFCKAGELESAKD 281
Query: 97 YIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDK 148
+ D+ KN I G ++D Y D A+ K+ +W+TMI G A +G K
Sbjct: 282 FFDRMPNKNVISWG-IMLDGYIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLK 340
Query: 149 ALDMFSQMLRASIKPDEVAYVGVLSACTH 177
AL++F + IKPDE +G++SAC+
Sbjct: 341 ALELFERFKEQDIKPDETFILGIISACSQ 369
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 8/149 (5%)
Query: 16 YINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTI 75
Y G D A + FD++ + + LWT++I GY+ ++ EA +LF +M+ I FTI
Sbjct: 45 YSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTI 104
Query: 76 VSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------Q 127
S+L A A L G+ + ++ K D+ N+++D++ C V+ A +
Sbjct: 105 SSVLKALARLTRFKGGQAVYGFVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCE 164
Query: 128 KDKFSWTTMIVGLAISGNGDKALDMFSQM 156
KD SW MI G + D A F +M
Sbjct: 165 KDIVSWNMMISGYGNNDRVDIARKFFDRM 193
>gi|212722054|ref|NP_001132129.1| uncharacterized protein LOC100193546 [Zea mays]
gi|194693506|gb|ACF80837.1| unknown [Zea mays]
gi|413926460|gb|AFW66392.1| hypothetical protein ZEAMMB73_680096 [Zea mays]
Length = 473
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 112/185 (60%), Gaps = 10/185 (5%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N V + TA+++ Y+ G V A + F++MP +D V WT+M+ GY+ + +A+ +F E
Sbjct: 149 NCHVFTQTALLNAYLKCGSVATACRVFEEMPVKDVVAWTSMVSGYVDSRMYLKAVEVFNE 208
Query: 63 MQTSN--IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M+ ++ + +E T+VS+ TA A L +L+ + + +Y++K +++++ NAL+DMY C
Sbjct: 209 MRGADDLVWPNEATVVSLATACAGLGSLEHAKGLHSYVEKAGLEDELIVRNALVDMYGKC 268
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E A +KD SWTTMI GL+ G G++A+ +F M + PD ++ VL
Sbjct: 269 GCIESAHRLFCLMREKDLHSWTTMISGLSSHGRGEEAVGLFFSMCEEGVLPDSTTFIVVL 328
Query: 173 SACTH 177
SAC+H
Sbjct: 329 SACSH 333
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 1/123 (0%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
++I A+V Y G ++ A + F M E+D WT MI G R EA+ LF M
Sbjct: 254 ELIVRNALVDMYGKCGCIESAHRLFCLMREKDLHSWTTMISGLSSHGRGEEAVGLFFSMC 313
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYID-KNKVKNDIFAGNALIDMYCICADV 123
++ D T + +L+A ++ +D G I ++ ++ V D ++D++ V
Sbjct: 314 EEGVLPDSTTFIVVLSACSHAGLVDEGIHIFNSMESEHNVPRDTKHYGCMVDLFSRAGLV 373
Query: 124 EKA 126
+A
Sbjct: 374 RRA 376
>gi|147797709|emb|CAN61058.1| hypothetical protein VITISV_011618 [Vitis vinifera]
Length = 529
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 102/182 (56%), Gaps = 9/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV A++ Y G + A Q F MP R+ V WT++I+GY N EAL F++M+
Sbjct: 214 DVFVHNALIDVYSKCGSIRDAVQVFQLMPMRNVVSWTSLINGYSDNNCPNEALGFFKQME 273
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK-VKNDIFAGNALIDMYCICADV 123
NI DE T++ ++ + LR+ +LGEWI Y+ K VK N L+DM+ C ++
Sbjct: 274 AENIRPDEITVLGVVCMCSKLRSFELGEWISQYVVKTGLVKESPAIANVLMDMHAKCGNI 333
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
++A +K SWT MI GLA+ G+G AL F QM R KPD + ++ +LSAC
Sbjct: 334 KRACQIFDGMEEKTIVSWTIMIQGLAMYGHGLSALVRFCQMQREGFKPDSLVFLSLLSAC 393
Query: 176 TH 177
+H
Sbjct: 394 SH 395
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 102/180 (56%), Gaps = 8/180 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+VI TA++S Y + +Q FD+MP+RD V+W A+I Y N + + +M
Sbjct: 113 EVIIQTALLSMYGLFDEDCGLQQIFDEMPQRDLVMWNALIAAYAHGNCPYKVREVSYDMV 172
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+SN+ + T VSIL+ ++LRAL G+ + Y+ KN ++ D+F NALID+Y C +
Sbjct: 173 SSNVKPNGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEXDVFVHNALIDVYSKCGSIR 232
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A ++ SWT++I G + + ++AL F QM +I+PDE+ +GV+ C+
Sbjct: 233 DAVQVFQLMPMRNVVSWTSLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLGVVCMCS 292
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 14/185 (7%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ +K V+S+ +I G +AR+ DQ+ D W +I GYL N EA+ ++
Sbjct: 12 LASKLVVSFASITLP----GTTSVARRIADQIDGLDTYTWNTIIRGYLEGNDPEEAILIY 67
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDL-GEWIKTYIDKNKVKNDIFAGNALIDMY-- 117
++ + D +T+V ++ A LR + L GE I I K + ++ AL+ MY
Sbjct: 68 NHVRKKGLKVDTYTLVFVIKA-CGLRPVILEGEQIHGQIFKLGFEFEVIIQTALLSMYGL 126
Query: 118 ----CICADV--EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C + E Q+D W +I A K ++ M+ +++KP+ V V +
Sbjct: 127 FDEDCGLQQIFDEMPQRDLVMWNALIAAYAHGNCPYKVREVSYDMVSSNVKPNGVTAVSI 186
Query: 172 LSACT 176
LS C+
Sbjct: 187 LSVCS 191
Score = 42.7 bits (99), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 57/157 (36%), Gaps = 12/157 (7%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G + A Q FD M E+ V WT MI G AL F +MQ D +S+L
Sbjct: 331 GNIKRACQIFDGMEEKTIVSWTIMIQGLAMYGHGLSALVRFCQMQREGFKPDSLVFLSLL 390
Query: 80 TARANLRALDLGEW-----------IKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
+A ++ +D G W I +++ DI L+D +
Sbjct: 391 SACSHAGLVDEG-WRCFSSMEADYHIXPWMEHYGCMVDILCRAGLVDEAFKFVQNMPIKP 449
Query: 129 DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165
D W T++ GN A + + + K E
Sbjct: 450 DMIVWRTLLGACXXQGNISLANQVMNXLCELGPKKSE 486
>gi|449454143|ref|XP_004144815.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
gi|449490933|ref|XP_004158752.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
Length = 484
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 104/187 (55%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++DV+ W ++ + G VD F QM ER V W +I + R EAL LF
Sbjct: 168 MSHRDVVVWNLMIRGFCKTGNVDFGLCLFRQMSERSLVSWNTIISCLAQNRRDVEALELF 227
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYI-DKNKVKNDIFAGNALIDMYCI 119
Q+M+ DE T+V++L + L AL++G+ I +Y K + GN+LID YC
Sbjct: 228 QQMEEHGFKPDEVTVVTMLPVCSRLGALEVGQRIHSYASSKGNLVGITTVGNSLIDFYCK 287
Query: 120 CADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C ++EKA K SW T+I+G A++G G+ A+D+F +M + +KP++ +V V
Sbjct: 288 CGNIEKAYNIFQKMTCKSVVSWNTIILGFALNGKGEFAIDLFMEMRKEYLKPNDATFVAV 347
Query: 172 LSACTHN 178
L+AC H+
Sbjct: 348 LTACVHS 354
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 83/195 (42%), Gaps = 39/195 (20%)
Query: 21 QVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80
++ A + F Q + L+ ++I + F ++L LF M+ I+ D++T +L
Sbjct: 56 RIAYADRLFSQSHNPNIFLFNSIIKAHSLSVPFHQSLLLFSSMKNHRIVPDQYTFAPLLK 115
Query: 81 ARANLRALDLGEW--------------------IKTYIDKNKVKN-----------DIFA 109
+ ANL LG+ ++ Y+ K+++ D+
Sbjct: 116 SCANLCEYSLGQCVISEVFRRGFYCFGSIRIGVVELYVCCEKMEDAWKMFDEMSHRDVVV 175
Query: 110 GNALIDMYC--------ICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI 161
N +I +C +C + +++ SW T+I LA + +AL++F QM
Sbjct: 176 WNLMIRGFCKTGNVDFGLCLFRQMSERSLVSWNTIISCLAQNRRDVEALELFQQMEEHGF 235
Query: 162 KPDEVAYVGVLSACT 176
KPDEV V +L C+
Sbjct: 236 KPDEVTVVTMLPVCS 250
Score = 38.9 bits (89), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y G ++ A F +M + V W +I G+ + A+ LF EM+ +
Sbjct: 280 SLIDFYCKCGNIEKAYNIFQKMTCKSVVSWNTIILGFALNGKGEFAIDLFMEMRKEYLKP 339
Query: 71 DEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
++ T V++LTA + L+ G E + + +++ + ++D+ VE+A K
Sbjct: 340 NDATFVAVLTACVHSGLLEKGRELFSSMAEDYEIQPKLEHFGCMVDLLGRGGCVEEAHK 398
>gi|354805201|gb|AER41619.1| CRR4 [Oryza glumipatula]
Length = 745
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 106/187 (56%), Gaps = 12/187 (6%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+SWTA+VS Y G +D + FD MP ++ V W AMI GY +R+ EAL F
Sbjct: 268 MDQKDVVSWTAMVSAYAKIGDLDTTNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTF 327
Query: 61 QEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
Q M DE T+VS+++A A L +++ WI ++I K+ + + GNALIDM+
Sbjct: 328 QLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAK 387
Query: 120 CADVEKAQKDKF--------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C DV +AQ + +WTTMI G A + + AL +++ M R ++ D+ ++
Sbjct: 388 CGDVGRAQSIFYKMETRCIITWTTMISGFAFNRD---ALLVYNNMCREGVQLDDTVFIAA 444
Query: 172 LSACTHN 178
L+AC H
Sbjct: 445 LAACAHG 451
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 84/184 (45%), Gaps = 17/184 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++DV+SW +IV Y++ G A F+ MPER+ V W ++ G+ R+ A +F
Sbjct: 175 MVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDMVTARAVF 234
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M + N + I T+ D+ E ++ D+ K D+ + A++ Y
Sbjct: 235 DRMPSRNAVSWNLMISGYATSG------DV-EAARSVFDRMDQK-DVVSWTAMVSAYAKI 286
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFS-QMLRASIKPDEVAYVGV 171
D++ K+ SW MI G + D+AL F ML +PDE V V
Sbjct: 287 GDLDTTNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSV 346
Query: 172 LSAC 175
+SAC
Sbjct: 347 VSAC 350
>gi|15241651|ref|NP_196468.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171895|sp|Q9FNN7.1|PP371_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08510
gi|9759345|dbj|BAB10000.1| unnamed protein product [Arabidopsis thaliana]
gi|50897238|gb|AAT85758.1| At5g08510 [Arabidopsis thaliana]
gi|332003930|gb|AED91313.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 511
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 106/187 (56%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV W A+++ Y RG + A + FD MP ++ WT +I G+ + + EAL +F
Sbjct: 143 MSKRDVPVWNAMITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMF 202
Query: 61 QEMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
M+ ++ + T+VS+L A ANL L++G ++ Y +N ++I+ NA I+MY
Sbjct: 203 LCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSK 262
Query: 120 CADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C ++ A Q++ SW +MI LA G D+AL +F+QMLR KPD V +VG
Sbjct: 263 CGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVG 322
Query: 171 VLSACTH 177
+L AC H
Sbjct: 323 LLLACVH 329
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 69/168 (41%), Gaps = 28/168 (16%)
Query: 11 AIVSRYINRGQVDIARQCFDQMP-ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
A + Y G +D+A++ F+++ +R+ W +MI + EALTLF +M
Sbjct: 255 ATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEK 314
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
D T V +L A + + G E K+ + +K+ + +ID+
Sbjct: 315 PDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCMIDL------------ 362
Query: 129 DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
L G +A D+ M +KPD V + +L AC+
Sbjct: 363 -----------LGRVGKLQEAYDLIKTM---PMKPDAVVWGTLLGACS 396
>gi|326489701|dbj|BAK01831.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 484
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 103/185 (55%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + ++++ +++ + G V AR+ FD MPE D V WTA+IDG ++ R EA+ F
Sbjct: 132 MTVRSLVTYNTMITGLMRNGLVAAAREVFDGMPEPDKVSWTALIDGCVKNGRHDEAIDCF 191
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M + D T+V+ ++A A + AL LG W+ + + +++ +I N+LIDMY C
Sbjct: 192 HAMLLDGVEPDYVTLVAAISACAEVGALGLGMWVHRLVTRERLEGNIRIANSLIDMYARC 251
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VE A+ + SW +MIVG A +G A++ F M R +PD V + GVL
Sbjct: 252 GQVEFARQVFDSMRNRTVVSWNSMIVGFAANGRCTDAIEHFEAMRRKGFRPDAVTFTGVL 311
Query: 173 SACTH 177
+AC+H
Sbjct: 312 TACSH 316
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 25/165 (15%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y GQV+ ARQ FD M R V W +MI G+ R +A+ F+ M+
Sbjct: 243 SLIDMYARCGQVEFARQVFDSMRNRTVVSWNSMIVGFAANGRCTDAIEHFEAMRRKGFRP 302
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDK 130
D T +LTA ++ D G Y + ++ I A ++ Y D+
Sbjct: 303 DAVTFTGVLTACSHAGLTDEG---LRYYKAMRAEHGI---TARMEHYGCVVDL------- 349
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
L +G +A+ + + M ++P+EV +L+ C
Sbjct: 350 ---------LGRAGRLGEAMSVVATM---PMRPNEVVLGALLAGC 382
>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 595
Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 67/176 (38%), Positives = 107/176 (60%), Gaps = 9/176 (5%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y N G V A + FD+MPE+D V W ++I+G+ + EAL L+ EM I
Sbjct: 161 SLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMDLKGIKP 220
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--- 127
D FTIVS+L+A A + AL LG+ Y+ K + ++ + N L+D+Y C VE+A+
Sbjct: 221 DGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLF 280
Query: 128 -----KDKFSWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGVLSACTH 177
K+ SWT++IVGLA++G G +A+++F M + + P E+ +VG+L AC+H
Sbjct: 281 DEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACSH 336
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 9/146 (6%)
Query: 39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMG-DEFTIVSILTARANLRALDLGEWIKTY 97
+W +I GY + A++L++EM+ S + D T +L A + + LGE I +
Sbjct: 87 IWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETIHSV 146
Query: 98 IDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKA 149
+ ++ + I+ N+L+ +Y C DV A +KD +W ++I G A +G ++A
Sbjct: 147 VIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEA 206
Query: 150 LDMFSQMLRASIKPDEVAYVGVLSAC 175
L ++++M IKPD V +LSAC
Sbjct: 207 LALYTEMDLKGIKPDGFTIVSLLSAC 232
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 80/158 (50%), Gaps = 13/158 (8%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRF-REALTLFQE 62
+++ S ++ Y G+V+ A+ FD+M +++ V WT++I G L VN +EA+ LF+
Sbjct: 255 RNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVG-LAVNGLGKEAIELFKN 313
Query: 63 MQTSN-IMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M++ ++ E T V IL A ++ + G E+ + ++ K++ I ++D+
Sbjct: 314 MESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARA 373
Query: 121 ADVEKA---------QKDKFSWTTMIVGLAISGNGDKA 149
V+KA Q + W T++ + G+ D A
Sbjct: 374 GQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSDLA 411
>gi|225456719|ref|XP_002268090.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 529
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 102/182 (56%), Gaps = 9/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV A++ Y G + A Q F MP R+ V WT++I+GY N EAL F++M+
Sbjct: 214 DVFVHNALIVVYSKCGSIRDAVQVFQLMPMRNVVSWTSLINGYSDNNCPNEALGFFKQME 273
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK-NKVKNDIFAGNALIDMYCICADV 123
NI DE T++ ++ + LR+ +LGEWI Y+ K +K NAL+DM+ C ++
Sbjct: 274 AENIRPDEITVLGVVCMCSKLRSFELGEWISQYVVKIGLLKESPAIANALMDMHAKCGNI 333
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+A +K SWT MI GLA+ G+G AL F QM R KPD + ++ +LSAC
Sbjct: 334 NRACQIFDGMEEKTIVSWTIMIQGLAMHGHGLSALVRFCQMQREGFKPDSLVFLSLLSAC 393
Query: 176 TH 177
+H
Sbjct: 394 SH 395
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 100/180 (55%), Gaps = 8/180 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+VI TA+++ Y + +Q FD+MP+RD V+W A+I Y N + + +M
Sbjct: 113 EVIIQTALLNLYGLFDEDCGLQQIFDEMPQRDLVMWNALIAAYAHGNCPYKVREVSYDMV 172
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
SN+ + T VSIL+ ++LRAL G+ + Y+ KN ++ D+F NALI +Y C +
Sbjct: 173 RSNVKPNGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEFDVFVHNALIVVYSKCGSIR 232
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A ++ SWT++I G + + ++AL F QM +I+PDE+ +GV+ C+
Sbjct: 233 DAVQVFQLMPMRNVVSWTSLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLGVVCMCS 292
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 14/185 (7%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ +K V+S+ +I G +AR+ DQ+ D W +I GYL N EA+ ++
Sbjct: 12 LASKLVVSFASITLP----GTTSVARRIADQIDGLDTYTWNTIIRGYLEGNDPEEAILVY 67
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDL-GEWIKTYIDKNKVKNDIFAGNALIDMY-- 117
++ + D +T+V ++ A LR + L GE I I K + ++ AL+++Y
Sbjct: 68 NHVRKKGLKVDTYTLVFVIKA-CGLRPVILEGEQIHGQIFKLGFEFEVIIQTALLNLYGL 126
Query: 118 ----CICADV--EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C + E Q+D W +I A K ++ M+R+++KP+ V V +
Sbjct: 127 FDEDCGLQQIFDEMPQRDLVMWNALIAAYAHGNCPYKVREVSYDMVRSNVKPNGVTAVSI 186
Query: 172 LSACT 176
LS C+
Sbjct: 187 LSVCS 191
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 12/146 (8%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ + G ++ A Q FD M E+ V WT MI G AL F +MQ
Sbjct: 322 ALMDMHAKCGNINRACQIFDGMEEKTIVSWTIMIQGLAMHGHGLSALVRFCQMQREGFKP 381
Query: 71 DEFTIVSILTARANLRALDLGEW-----------IKTYIDKNKVKNDIFAGNALIDMYCI 119
D +S+L+A ++ +D G W I +++ DI L+D
Sbjct: 382 DSLVFLSLLSACSHAGLVDEG-WRCFSSMEADYHISPWMEHYGCMVDILCRAGLVDEAFK 440
Query: 120 CADVEKAQKDKFSWTTMIVGLAISGN 145
+ D W T++ GN
Sbjct: 441 FVQNMPIKPDMIVWRTLLGACHTQGN 466
>gi|413939596|gb|AFW74147.1| hypothetical protein ZEAMMB73_269656 [Zea mays]
Length = 524
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 103/187 (55%), Gaps = 13/187 (6%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
+ DV SWT++++ G VD AR FD MP R+ V W+AM+ Y+ F +A+ LF+
Sbjct: 154 RAADVCSWTSLLTACAKAGHVDEARALFDGMPRRNDVAWSAMLSAYVAAGSFGDAVRLFE 213
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYI---DKNKVKNDIFAGNALIDMYC 118
+M S + + +V +LTA L ALD G W+ + + V D AL+DMY
Sbjct: 214 DMLRSCVRPNRAAVVGVLTACGALGALDQGRWVHALLVGGGGHGVAMDGVVATALVDMYA 273
Query: 119 ICADVEKA----------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
C +E A Q+D F++T MI GL+ G +A+D+F QML ++P+EV +
Sbjct: 274 KCGSLETARQVFAAAPRGQRDVFAYTAMISGLSDHGRCGEAIDLFGQMLVEGVRPNEVTF 333
Query: 169 VGVLSAC 175
+ VL+AC
Sbjct: 334 ICVLTAC 340
>gi|356565111|ref|XP_003550788.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 478
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 107/195 (54%), Gaps = 18/195 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V+SW ++++ Y+ D AR+ FD MP R+ V WT M+ G R + R+AL LF
Sbjct: 102 MPQRSVVSWNSMLAGYVRCADFDGARRVFDVMPCRNVVSWTTMVAGCARNGKSRQALLLF 161
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYID-----KNKVKNDIFAGNALID 115
EM+ + + D+ +V+ L+A A L L LG WI Y+ +N + + NALI
Sbjct: 162 GEMRRACVELDQVALVAALSACAELGDLKLGRWIHWYVQQRFVARNWQQPSVRLNNALIH 221
Query: 116 MYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIK----- 162
MY C + +A +K SWT+MI+ A G G +ALD+F ML +K
Sbjct: 222 MYASCGILHEAYQVFVKMPRKSTVSWTSMIMAFAKQGLGKEALDLFKTMLSDGVKVDGVR 281
Query: 163 PDEVAYVGVLSACTH 177
PDE+ ++GVL AC+H
Sbjct: 282 PDEITFIGVLCACSH 296
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 39/176 (22%)
Query: 39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKT-- 96
+W +I GY R + +A+ + M +S D FT S+L+A A + GE +
Sbjct: 8 VWNHVIRGYARSHTPWKAVECYTHMVSSKAEPDGFTHSSLLSACARGGLVKEGEQVHATV 67
Query: 97 ------------------YIDKNKVK--NDIFAG---------NALIDMYCICADVEKAQ 127
Y + V+ +F G N+++ Y CAD + A+
Sbjct: 68 LVKGYCSNVFVDTSLITFYAGRGGVERARHVFDGMPQRSVVSWNSMLAGYVRCADFDGAR 127
Query: 128 --------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
++ SWTTM+ G A +G +AL +F +M RA ++ D+VA V LSAC
Sbjct: 128 RVFDVMPCRNVVSWTTMVAGCARNGKSRQALLLFGEMRRACVELDQVALVAALSAC 183
>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 108/184 (58%), Gaps = 9/184 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD+ +WT IVS Y G ++ A + F QMPE++ V W+A+I GY R + EAL F +M
Sbjct: 259 KDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKM 318
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
I +++T S L A A++ AL G+ + Y+ + + + ++LIDMY C +
Sbjct: 319 MKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGML 378
Query: 124 EKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
E + ++D W TMI LA +G+G+KA+ MF+ M+ + +KPD + ++ +LSA
Sbjct: 379 EASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSA 438
Query: 175 CTHN 178
C+H+
Sbjct: 439 CSHS 442
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 98/215 (45%), Gaps = 39/215 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ SW +++ Y G V+ AR+ FD+M E+D V W ++ Y + F EA+ L+
Sbjct: 124 MSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLY 183
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++ + ++ + F+ +L L+ L L + + + +++ ++++D Y C
Sbjct: 184 RDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYAKC 243
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLA--------------------------ISGN- 145
++ A+ KD +WTT++ G A ISG
Sbjct: 244 GEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYA 303
Query: 146 ----GDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
G +ALD F++M++ I P++ + L AC
Sbjct: 304 RNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACA 338
>gi|110741623|dbj|BAE98759.1| hypothetical protein [Arabidopsis thaliana]
Length = 504
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 106/187 (56%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV W A+++ Y RG + A + FD MP ++ WT +I G+ + + EAL +F
Sbjct: 136 MSKRDVPVWNAMITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMF 195
Query: 61 QEMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
M+ ++ + T+VS+L A ANL L++G ++ Y +N ++I+ NA I+MY
Sbjct: 196 LCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSK 255
Query: 120 CADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C ++ A Q++ SW +MI LA G D+AL +F+QMLR KPD V +VG
Sbjct: 256 CGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVG 315
Query: 171 VLSACTH 177
+L AC H
Sbjct: 316 LLLACVH 322
Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 69/168 (41%), Gaps = 28/168 (16%)
Query: 11 AIVSRYINRGQVDIARQCFDQMP-ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
A + Y G +D+A++ F+++ +R+ W +MI + EALTLF +M
Sbjct: 248 ATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEK 307
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
D T V +L A + + G E K+ + +K+ + +ID+
Sbjct: 308 PDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCMIDL------------ 355
Query: 129 DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
L G +A D+ M +KPD V + +L AC+
Sbjct: 356 -----------LGRVGKLQEAYDLIKTM---PMKPDAVVWGTLLGACS 389
>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
Length = 710
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 105/191 (54%), Gaps = 14/191 (7%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ +S T +VS Y V AR F + ++D V W A+I GY + EAL LF
Sbjct: 319 MPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLF 378
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVK------NDIFAGNALI 114
+ ++ ++ +T ++L A ANL L+LG +++ K+ + DIF GN+LI
Sbjct: 379 RMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLI 438
Query: 115 DMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 166
DMY C VE+ +KD SW TMI+G A +G G +AL++F +ML + KPD V
Sbjct: 439 DMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHV 498
Query: 167 AYVGVLSACTH 177
+G L AC+H
Sbjct: 499 TMIGTLCACSH 509
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 95/184 (51%), Gaps = 8/184 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V S+ +I+S + G VD + F MPE+D W +MI G+ + +RF EAL F
Sbjct: 85 MSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWF 144
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M + + ++++ S L+A + L+ L LG I I K+K D+F G+ LID Y C
Sbjct: 145 VRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKC 204
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
V A +K+ SW +I +G +AL+ F +M KPDEV V+
Sbjct: 205 GLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVV 264
Query: 173 SACT 176
SAC
Sbjct: 265 SACA 268
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 88/210 (41%), Gaps = 40/210 (19%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV + ++ Y G V AR+ FD M E++ V W +I Y + EAL F M
Sbjct: 190 DVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMT 249
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK-NKVKNDIFAGNALIDMYCICADV 123
DE T+ S+++A A L A G I + K +K +ND+ GNAL+DMY C V
Sbjct: 250 ELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRV 309
Query: 124 EKA---------------------------------------QKDKFSWTTMIVGLAISG 144
+A QKD SW +I G +G
Sbjct: 310 NEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNG 369
Query: 145 NGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
++AL +F + R S+ P + +L+A
Sbjct: 370 ENEEALGLFRMLKRESVCPTHYTFGNLLNA 399
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 77/174 (44%), Gaps = 25/174 (14%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
+ D+ +++ Y+ G V+ + F+ M E+D+V W MI GY + EAL LFQ
Sbjct: 427 EEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQ 486
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
+M S D T++ L A ++ ++ G + K + L+ +
Sbjct: 487 KMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKE---------HGLLPV----- 532
Query: 122 DVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
K +T M+ L +G ++A D+ M + +PD V + +LSAC
Sbjct: 533 --------KDHYTCMVDLLGRAGCLEEAKDLIESMPK---QPDAVVWSSLLSAC 575
>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 108/184 (58%), Gaps = 9/184 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD+ +WT IVS Y G ++ A + F QMPE++ V W+A+I GY R + EAL F +M
Sbjct: 259 KDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKM 318
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
I +++T S L A A++ AL G+ + Y+ + + + ++LIDMY C +
Sbjct: 319 MKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGML 378
Query: 124 EKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
E + ++D W TMI LA +G+G+KA+ MF+ M+ + +KPD + ++ +LSA
Sbjct: 379 EASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSA 438
Query: 175 CTHN 178
C+H+
Sbjct: 439 CSHS 442
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 98/215 (45%), Gaps = 39/215 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ SW +++ Y G V+ AR+ FD+M E+D V W ++ Y + F EA+ L+
Sbjct: 124 MSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLY 183
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++ + ++ + F+ +L L+ L L + + + +++ ++++D Y C
Sbjct: 184 RDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYSKC 243
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLA--------------------------ISGN- 145
++ A+ KD +WTT++ G A ISG
Sbjct: 244 GEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYA 303
Query: 146 ----GDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
G +ALD F++M++ I P++ + L AC
Sbjct: 304 RNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACA 338
>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Glycine max]
Length = 635
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 102/182 (56%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+ VI+WTA+++ Y+ G+V++A + F +M R V W AMI GY+ R + L LF+ M
Sbjct: 195 RSVITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTM 254
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ + + ++ S+L +NL AL LG+ + + K + +D AG +L+ MY C D+
Sbjct: 255 LETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDL 314
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ A +KD W MI G A G G KAL +F +M + +KPD + +V VL AC
Sbjct: 315 KDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLAC 374
Query: 176 TH 177
H
Sbjct: 375 NH 376
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 25/173 (14%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ D + T++VS Y G + A + F Q+P +D V W AMI GY + ++AL LF E
Sbjct: 295 SSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDE 354
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M+ + D T V++L A + +DLG ++ + N ++ D F + Y D
Sbjct: 355 MKKEGLKPDWITFVAVLLACNHAGLVDLG--VQYF---NTMRRD-FGIETKPEHYACMVD 408
Query: 123 VEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ L +G +A+D+ M KP Y +L AC
Sbjct: 409 L----------------LGRAGKLSEAVDLIKSM---PFKPHPAIYGTLLGAC 442
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 74/184 (40%), Gaps = 16/184 (8%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ + +S+ +++ + + V AR FD MP +D W MI +V EA LF
Sbjct: 99 IPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLF 158
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M N + +VS A +L A ++ + + A+I Y
Sbjct: 159 SAMPEKNCVSWS-AMVSGYVACGDLDAA-----VECFYAAP--MRSVITWTAMITGYMKF 210
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VE A+ + +W MI G +G + L +F ML +KP+ ++ VL
Sbjct: 211 GRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVL 270
Query: 173 SACT 176
C+
Sbjct: 271 LGCS 274
>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570 [Vitis vinifera]
Length = 561
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 116/187 (62%), Gaps = 13/187 (6%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++V+S+T ++ Y G + AR F++ PERD V W+A+I GY++ + EA+ +F
Sbjct: 246 MPHRNVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIF 305
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGN---ALIDMY 117
EM + N+ DEF +VS+++A + + +L+L +W+ Y+ K+ + D+ + ALIDM
Sbjct: 306 LEMCSRNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSI--DVHRAHVIAALIDMN 363
Query: 118 CICADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
C +++A K D S+ +M+ GL+I G G +A+ +FS+ML + PD+VA+
Sbjct: 364 AKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFT 423
Query: 170 GVLSACT 176
+L+AC+
Sbjct: 424 VILTACS 430
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 16/181 (8%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV T+++ Y G++ AR+ FD+M ER+ V WTAMI GY + EA LF EM
Sbjct: 157 DVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMP 216
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV- 123
N + I+S +LR+ + D+ +N + + +ID Y D+
Sbjct: 217 EKNAVSWN-AIISGYVKCGDLRS------ARKMFDEMPHRN-VVSFTTMIDGYAKSGDMA 268
Query: 124 -------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
E ++D +W+ +I G +G ++A+ +F +M ++KPDE V ++SAC+
Sbjct: 269 SARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMCSRNVKPDEFIMVSLMSACS 328
Query: 177 H 177
Sbjct: 329 Q 329
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 8/136 (5%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88
F+ + VLW I GY ++LF M+ S+ + D+FT S++ A + + +
Sbjct: 80 FNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGV 139
Query: 89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKFSWTTMIVGL 140
G + V D+F +LID+Y C ++ E +++ SWT MI G
Sbjct: 140 KEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGY 199
Query: 141 AISGNGDKALDMFSQM 156
A + +A +F +M
Sbjct: 200 ASFSDLVEARKLFDEM 215
Score = 40.8 bits (94), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 63/156 (40%), Gaps = 25/156 (16%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G +D A + F++MP+RD + + +M+ G +A++LF M + D+ IL
Sbjct: 367 GSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVIL 426
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVG 139
TA + +D G + Y + K I D Y D+
Sbjct: 427 TACSRAGLVDEGCY---YFESMKTDYSIVPSP---DHYACMVDL---------------- 464
Query: 140 LAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
L +G +A ++ M ++P A+ +L AC
Sbjct: 465 LGRAGRLKEAYELLKSM---PVEPHAGAWGALLGAC 497
>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 110/178 (61%), Gaps = 11/178 (6%)
Query: 11 AIVSRYINRGQVDIARQCFDQM--PERDYVLWTAMIDGYLRVNRFREALTLFQEMQT-SN 67
+++ Y G + +AR FD+M +R+ V W AMI GY + ++ +A+ +F+ MQ
Sbjct: 132 SLIDMYFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGG 191
Query: 68 IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA- 126
++ ++ T+VS+L A A+L ALDLG+WI +I + ++ +F GNAL DMY C + +A
Sbjct: 192 VVPNDVTLVSVLPACAHLGALDLGKWIDGFISRREMALGLFLGNALADMYAKCGCITEAR 251
Query: 127 -------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
++D SW+ +I GLA+ G+ D+A F +ML KP++V ++G+L+ACTH
Sbjct: 252 RVFNKMEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGLLTACTH 309
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--- 127
DEFT S+L A A L + G+ I + K ++++F N+LIDMY + A+
Sbjct: 91 DEFTFTSVLKACAGLAHVVNGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARHLF 150
Query: 128 -------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGVLSACTH 177
++ W MI G A + A+++F M + + P++V V VL AC H
Sbjct: 151 DEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAH 208
>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 633
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 67/188 (35%), Positives = 107/188 (56%), Gaps = 15/188 (7%)
Query: 6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT 65
V+S TA++S Y GQ+D AR FD +P +D V W AM+DGY + R EAL LF++M
Sbjct: 188 VVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQMLR 247
Query: 66 SNIMGDEFTIVSILTARANLRALDLGEWIKTYI----DKNKVKNDIFAGNALIDMYCICA 121
S + DE ++V L+A A L + G W+ +++ + +V+ + G AL+DMY C
Sbjct: 248 SGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARVGTALVDMYYKCG 307
Query: 122 DVEKA-----------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
+E+A +D +W MI G A+ G +AL+ F Q+ + P ++ ++G
Sbjct: 308 SLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRAQGLWPTDITFIG 367
Query: 171 VLSACTHN 178
VL+AC+H+
Sbjct: 368 VLNACSHS 375
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 28/169 (16%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMP---ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTS 66
TA+V Y G ++ A F + +RD V W AMI+GY R REAL F +++
Sbjct: 297 TALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRAQ 356
Query: 67 NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126
+ + T + +L A ++ +D G +FA A+ + Y I VE
Sbjct: 357 GLWPTDITFIGVLNACSHSGLVDEGR-------------ALFA--AMEEEYGIVPKVEH- 400
Query: 127 QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ L +G ++A D+ M KPD + +L AC
Sbjct: 401 ------YGCMVDLLGRAGRVEEAFDLVQSM---KAKPDAAMWASLLGAC 440
>gi|222631730|gb|EEE63862.1| hypothetical protein OsJ_18686 [Oryza sativa Japonica Group]
Length = 551
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 65/186 (34%), Positives = 108/186 (58%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ +DV+SW ++S + GQ+ A F+ MP++ V WTAM+ GY V + A+ F
Sbjct: 180 MRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAF 239
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ MQT D+ +IV++L A A L L+LG WI Y ++ + NAL++MY C
Sbjct: 240 RSMQTEGFEPDDVSIVAVLPACAQLGTLELGRWIYAYCKRHGMLTSTHICNALMEMYAKC 299
Query: 121 ADVEK--------AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGV 171
+++ A KD SW+T+I GLA G +A+ +F++M + ++P+ + +VG+
Sbjct: 300 GCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGL 359
Query: 172 LSACTH 177
LSAC++
Sbjct: 360 LSACSY 365
Score = 60.1 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 50/203 (24%), Positives = 82/203 (40%), Gaps = 46/203 (22%)
Query: 21 QVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-------QTSNIMGDEF 73
+V A + F Q+ + + L AMI Y + ++ R+A+ ++ M + GD F
Sbjct: 61 RVTHAARVFAQVRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRF 120
Query: 74 TIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK----- 128
T +L A AL+LG+ + T++ ++ + N+LI+MY D+ A K
Sbjct: 121 TYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEM 180
Query: 129 --------------------------------DK--FSWTTMIVGLAISGNGDKALDMFS 154
DK +WT M+ G G+ A+D F
Sbjct: 181 RERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFR 240
Query: 155 QMLRASIKPDEVAYVGVLSACTH 177
M +PD+V+ V VL AC
Sbjct: 241 SMQTEGFEPDDVSIVAVLPACAQ 263
>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 607
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 71/189 (37%), Positives = 107/189 (56%), Gaps = 11/189 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMP-ERDYVLWTAMIDGYLRVNRFREALTL 59
M + +V+SWT++VS Y G VD A + F+ MP +++ V W AMI +++ NRFREA L
Sbjct: 161 MSDPNVVSWTSLVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFAL 220
Query: 60 FQEMQTSNIMG-DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC 118
F+ M+ M D F ++L+A + AL+ G WI Y++K + D +IDMYC
Sbjct: 221 FRRMRVEKKMELDRFVAATMLSACTGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMYC 280
Query: 119 ICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVAYV 169
C ++KA K SW MI G A+ G G+ A+ +F +M A + PD + +V
Sbjct: 281 KCGCLDKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFV 340
Query: 170 GVLSACTHN 178
VL+AC H+
Sbjct: 341 NVLTACAHS 349
>gi|125595888|gb|EAZ35668.1| hypothetical protein OsJ_19954 [Oryza sativa Japonica Group]
Length = 510
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 107/185 (57%), Gaps = 10/185 (5%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+D + A++S Y G VD A + F++MP+R+ V WTAM+ GY + R EA+ F EM
Sbjct: 151 RDTAVYNALLSAYAKGGLVDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEM 210
Query: 64 -QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ + + +E T+ S+L A A + A++LG ++ Y + +++ NAL++MY C
Sbjct: 211 WERAGVQPNELTVSSVLPACAAVGAMELGRKVEEYARGKGLLRNVYVANALLEMYSKCGS 270
Query: 123 VEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+ +A Q+D SW +MI+ A+ G +AL +F ++ A +KPD + +VGV+
Sbjct: 271 IRQAWQVFQGIGRQQDLCSWNSMIMAFAVHGLWREALALFYKLRMAGVKPDGITFVGVIL 330
Query: 174 ACTHN 178
ACTH
Sbjct: 331 ACTHG 335
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 72/174 (41%), Gaps = 26/174 (14%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMP-ERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++V A++ Y G + A Q F + ++D W +MI + +REAL LF +
Sbjct: 253 RNVYVANALLEMYSKCGSIRQAWQVFQGIGRQQDLCSWNSMIMAFAVHGLWREALALFYK 312
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
++ + + D T V ++ A + ++ G K + D + + F+ I+ Y D
Sbjct: 313 LRMAGVKPDGITFVGVILACTHGGLVNEG---KLFFDSMEAE---FSLKPRIEHYGCMVD 366
Query: 123 VEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+ G ++ +S + ++PD V + +L AC+
Sbjct: 367 -------------------LLGRAGLLIESYSLIASMPVEPDAVIWGALLGACS 401
>gi|357113878|ref|XP_003558728.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 532
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 111/185 (60%), Gaps = 10/185 (5%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD +SW +++ Y RG++ AR F+++PERD V W AMI G++R A+ LF++M
Sbjct: 207 KDHVSWNVMITAYAKRGEMAPARVLFNRIPERDVVSWNAMISGHVRCGSHVYAMELFEQM 266
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKND--IFAGNALIDMYCICA 121
Q D T++S+L+A A+ +D+G + + + + ++ + GNALIDMY C
Sbjct: 267 QRMGQKPDVVTMLSLLSACADSGDIDVGRRLHSSLSEMFLRTGFTVILGNALIDMYAKCG 326
Query: 122 DVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
++ A KD +W ++I GLA+ G+ +++D+F +ML+ ++PDE+ +V VL
Sbjct: 327 SMKSALQVFWVMRDKDVSTWNSIIGGLALHGHVLESIDVFKKMLKEKVRPDEITFVAVLI 386
Query: 174 ACTHN 178
AC+H
Sbjct: 387 ACSHG 391
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 12/149 (8%)
Query: 19 RGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG----DEFT 74
RG + A FDQ+P D ++ +I G R+A++L+ M G D+ T
Sbjct: 55 RGAIAHAYLVFDQIPRPDLFMYNTLIRGAAHTAAPRDAVSLYARMARRGSCGGVRPDKIT 114
Query: 75 IVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKA 126
+L A + A G + ++ K ++D F NALI M+ C ++ +A
Sbjct: 115 FPFVLRACTAMGAGGTGAQVHAHVVKAGCESDAFVRNALIGMHASCGELGVASALFDGRA 174
Query: 127 QKDKFSWTTMIVGLAISGNGDKALDMFSQ 155
++D +W+ MI G A G+ A +F +
Sbjct: 175 REDAVAWSAMITGCARRGDIVAARKLFDE 203
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 67/172 (38%), Gaps = 31/172 (18%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D A++ + + G++ +A FD D V W+AMI G R A LF E
Sbjct: 146 DAFVRNALIGMHASCGELGVASALFDGRAREDAVAWSAMITGCARRGDIVAARKLFDECP 205
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
D + ++TA A GE + N++
Sbjct: 206 VK----DHVSWNVMITAYAK-----RGEMAPARVLFNRIP-------------------- 236
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
++D SW MI G G+ A+++F QM R KPD V + +LSAC
Sbjct: 237 --ERDVVSWNAMISGHVRCGSHVYAMELFEQMQRMGQKPDVVTMLSLLSACA 286
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 70/164 (42%), Gaps = 10/164 (6%)
Query: 6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT 65
VI A++ Y G + A Q F M ++D W ++I G E++ +F++M
Sbjct: 312 VILGNALIDMYAKCGSMKSALQVFWVMRDKDVSTWNSIIGGLALHGHVLESIDVFKKMLK 371
Query: 66 SNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICA--- 121
+ DE T V++L A ++ +D G E+ +++ ++ ++DM
Sbjct: 372 EKVRPDEITFVAVLIACSHGGMVDKGREYFNLMQHHYRIEPNVKHYGCMVDMLGRAGLLK 431
Query: 122 ------DVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159
D K + + W T++ + G + A Q+L+A
Sbjct: 432 EAFEFIDTMKVEPNSVIWRTLLGACRVHGEIELAEHANRQLLKA 475
>gi|297599623|ref|NP_001047477.2| Os02g0625100 [Oryza sativa Japonica Group]
gi|125582938|gb|EAZ23869.1| hypothetical protein OsJ_07586 [Oryza sativa Japonica Group]
gi|255671102|dbj|BAF09391.2| Os02g0625100 [Oryza sativa Japonica Group]
Length = 493
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 111/188 (59%), Gaps = 11/188 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+SW ++ Y G + AR+ FD+MP R+ W +MI G L+ + EAL +F
Sbjct: 165 MPEKNVVSWNTMLGAYARAGMLPKARKLFDRMPSRNAATWGSMITGLLQSDHCEEALRVF 224
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK--NKVKNDIFAGNALIDMYC 118
+M S ++ +E +VS ++A LR ++ G W+ Y ++ N + + A A++DMY
Sbjct: 225 SDMVASGVVPNEPALVSTVSACTQLRWMEHGTWVHGYAERELNGAMSAVLA-TAIVDMYG 283
Query: 119 ICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C + A ++ +SW +MI GLA++G+ +AL +F +M A ++P+++ ++G
Sbjct: 284 KCGSIRDAVRVFAAMPVRNIYSWNSMIAGLAMNGSERQALSLFWKMQLAGVRPNDITFIG 343
Query: 171 VLSACTHN 178
+LSAC+H+
Sbjct: 344 LLSACSHS 351
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TAIV Y G + A + F MP R+ W +MI G R+AL+LF +MQ + +
Sbjct: 276 TAIVDMYGKCGSIRDAVRVFAAMPVRNIYSWNSMIAGLAMNGSERQALSLFWKMQLAGVR 335
Query: 70 GDEFTIVSILTARANLRALDLGEWI 94
++ T + +L+A ++ +D G W+
Sbjct: 336 PNDITFIGLLSACSHSGLVDEGRWL 360
>gi|6983870|dbj|BAA90805.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125553873|gb|EAY99478.1| hypothetical protein OsI_21446 [Oryza sativa Indica Group]
Length = 510
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 107/185 (57%), Gaps = 10/185 (5%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+D + A++S Y G VD A + F++MP+R+ V WTAM+ GY + R EA+ F EM
Sbjct: 151 RDTAVYNALLSAYAKGGLVDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEM 210
Query: 64 -QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ + + +E T+ S+L A A + A++LG ++ Y + +++ NAL++MY C
Sbjct: 211 WERAGVQPNELTVSSVLPACAAVGAMELGRKVEEYARGKGLLRNVYVANALLEMYSKCGS 270
Query: 123 VEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+ +A Q+D SW +MI+ A+ G +AL +F ++ A +KPD + +VGV+
Sbjct: 271 IRQAWQVFQGIGRQQDLCSWNSMIMAFAVHGLWREALALFYKLRMAGVKPDGITFVGVIL 330
Query: 174 ACTHN 178
ACTH
Sbjct: 331 ACTHG 335
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 72/174 (41%), Gaps = 26/174 (14%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMP-ERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++V A++ Y G + A Q F + ++D W +MI + +REAL LF +
Sbjct: 253 RNVYVANALLEMYSKCGSIRQAWQVFQGIGRQQDLCSWNSMIMAFAVHGLWREALALFYK 312
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
++ + + D T V ++ A + ++ G K + D + + F+ I+ Y D
Sbjct: 313 LRMAGVKPDGITFVGVILACTHGGLVNEG---KLFFDSMEAE---FSLKPRIEHYGCMVD 366
Query: 123 VEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+ G ++ +S + ++PD V + +L AC+
Sbjct: 367 -------------------LLGRAGLLIESYSLIASMPVEPDAVIWGALLGACS 401
>gi|356522492|ref|XP_003529880.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g08510-like [Glycine max]
Length = 474
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 106/186 (56%), Gaps = 10/186 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V W A+++ G +D A + F MP R+ V WT MI GY ++ +AL LF
Sbjct: 108 MPVRGVPRWNAMMAGLARFGDMDGALELFXSMPSRNVVPWTTMISGYSWNKQYDKALGLF 167
Query: 61 QEM-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
M Q IM + T+VSIL A ANL AL++G+ ++ Y KN + +A NA+++MY
Sbjct: 168 LGMEQEKGIMPNAVTLVSILPACANLXALEIGQRVEAYARKNGFFKNXYASNAVLEMYVK 227
Query: 120 CADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C ++ A ++ SW +M+VGLA+ G KAL+++ QML PD+V +VG
Sbjct: 228 CGKIDAAWRVFNEIGSLRNLCSWNSMVVGLAVHGECCKALELYDQMLGEGTSPDDVTFVG 287
Query: 171 VLSACT 176
+L ACT
Sbjct: 288 LLLACT 293
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 9/134 (6%)
Query: 39 LWTAMIDGYLRVNRFRE-ALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTY 97
L+ +I Y + + +L+ +++ + ++ T + +A +L + LG+ + T+
Sbjct: 13 LYNKLIQAYSSHPQHQHRCFSLYSQIRLHGFLPNQHTFNFLFSACTSLSSSSLGQMLHTH 72
Query: 98 IDKNKVKNDIFAGNALIDMYCICADVEKAQK--DKFS------WTTMIVGLAISGNGDKA 149
K+ + D+FA AL+DMY +E A+K D+ W M+ GLA G+ D A
Sbjct: 73 FIKSGFEPDLFAATALLDMYAKVGALELARKLFDEMPVRGVPRWNAMMAGLARFGDMDGA 132
Query: 150 LDMFSQMLRASIKP 163
L++F M ++ P
Sbjct: 133 LELFXSMPSRNVVP 146
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 74/174 (42%), Gaps = 26/174 (14%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE-RDYVLWTAMIDGYLRVNRFREALTLFQE 62
K+ + A++ Y+ G++D A + F+++ R+ W +M+ G +AL L+ +
Sbjct: 213 KNXYASNAVLEMYVKCGKIDAAWRVFNEIGSLRNLCSWNSMVVGLAVHGECCKALELYDQ 272
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M D+ T V +L A + G +I K+K + + I
Sbjct: 273 MLGEGTSPDDVTFVGLLLACTQGGMVKKGR----HIFKSKTTS-----------FYIIPK 317
Query: 123 VEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+E + M+ L +G +A ++ M S+KPD V + +L AC+
Sbjct: 318 LEH-------YGCMVDLLGRAGQLREAYEVIQSM---SMKPDSVIWGALLGACS 361
>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
Length = 672
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 112/183 (61%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++ V+S+TA+++ Y +RG ++ AR+ FD++ +D V W AMI GY+ F+EAL L+++
Sbjct: 128 HRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKD 187
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M +N+ DE T+V++++A A +++LG + ++I+ + ++I N LID+Y C +
Sbjct: 188 MMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGE 247
Query: 123 VEK--------AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
VE A+KD SW T+I G +AL +F +MLR+ P++V + VL A
Sbjct: 248 VETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPA 307
Query: 175 CTH 177
C H
Sbjct: 308 CAH 310
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 103/177 (58%), Gaps = 10/177 (5%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
++ Y G+V+ A F + ++D + W +I G+ +N ++EAL LFQEM S +
Sbjct: 238 LIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPN 297
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDK--NKVKNDIFAGNALIDMYCICADVEKAQ-- 127
+ T++S+L A A+L A+D+G WI YI+K V N +LIDMY C D+E A+
Sbjct: 298 DVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQV 357
Query: 128 ------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+ SW MI G A+ G + A D+FS+M + I PD++ +VG+LSAC+H+
Sbjct: 358 FDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHS 414
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 78/189 (41%), Gaps = 39/189 (20%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88
F+ + E + ++W M G+ + AL L+ M + ++ + ++ +L + A +AL
Sbjct: 22 FETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAKSKAL 81
Query: 89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK-------------------- 128
G+ I ++ K D++ +LI MY +E A K
Sbjct: 82 IEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITGY 141
Query: 129 -------------------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
D SW MI G + N +AL+++ M++ ++KPDE V
Sbjct: 142 ASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMV 201
Query: 170 GVLSACTHN 178
V+SAC +
Sbjct: 202 TVVSACAQS 210
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 30/172 (17%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T+++ Y G ++ A+Q FD M R W AMI G+ + A LF +M+ + I
Sbjct: 339 TSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGID 398
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKN-KVKNDIFAGNALIDMYCICADVEKAQK 128
D+ T V +L+A ++ LDLG I + ++ K+ + +ID+ C ++A+
Sbjct: 399 PDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAK- 457
Query: 129 DKFSWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVAYVGVLSACT-HN 178
+M+R ++PD V + +L AC HN
Sbjct: 458 --------------------------EMIRTMPMEPDGVIWCSLLKACKMHN 483
>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
Length = 605
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 63/176 (35%), Positives = 101/176 (57%), Gaps = 8/176 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+ + Y ++ ARQ FD+ E+ W AMI G + A++LFQ MQ +N+
Sbjct: 171 TALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVN 230
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
+ T+ SIL+A A + AL LGEW+ + I N+ +++++ ALIDMY C + A
Sbjct: 231 PNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVAREL 290
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+K++ +W MI G + G+G +AL +F ML +S+KP + ++ VL AC+H
Sbjct: 291 FDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSH 346
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 8/176 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T ++S + G+V+IAR F ++ ++D + AMI G+ +++ LF+E+ +S
Sbjct: 70 TGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLFKELLSSGER 129
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV------ 123
TIV ++ + L I + K + + AL +YC ++
Sbjct: 130 VSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQL 189
Query: 124 --EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
E A+K SW MI G +G D A+ +F M + ++ P+ V +LSAC
Sbjct: 190 FDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQ 245
>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
Length = 1286
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 101/177 (57%), Gaps = 8/177 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+A+V Y G +D A+ FD MP + V W A+I G+ R AL L +MQ N
Sbjct: 228 SALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQ 287
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK- 128
FT S+L+A A++ AL+ G+W+ ++ K+ +K F GN L+DMY ++ A++
Sbjct: 288 PTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRV 347
Query: 129 -------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
D SW TM+ G A G G + LD F QMLR I+P+E++++ VL+AC+H+
Sbjct: 348 FDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHS 404
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 94/172 (54%), Gaps = 8/172 (4%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
IV+ Y G +D AR+ FD+MP +D V WTA+I G+ + NR R+AL LF +M +
Sbjct: 129 IVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPN 188
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ---- 127
FT+ S+L A + LD G + + K ++ ++ G+AL+DMY C ++ AQ
Sbjct: 189 HFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFD 248
Query: 128 ----KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
K + SW +I G A G G+ AL + +M R + +P Y VLSAC
Sbjct: 249 GMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSAC 300
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 59/117 (50%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
++ Y G +D A++ FD++ + D V W M+ G + +E L F++M I +
Sbjct: 331 LLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPN 390
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
E + + +LTA ++ LD G + + K KV+ D+ +D+ +++A++
Sbjct: 391 EISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAER 447
>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 105/178 (58%), Gaps = 10/178 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+A++ Y G + AR+ FD MP +D V W A+I GY + EA+ LF M+ +
Sbjct: 268 SALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPH 327
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
D T++ +L+A + + ALDLG+W++T+ + +++D++ +ALIDMY C ++ A
Sbjct: 328 PDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRV 387
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLR--ASIKPDEVAYVGVLSACTH 177
K++ SW MI LA G +AL +F +M + +++P+++ ++GVLSAC H
Sbjct: 388 FESMPHKNEVSWNAMISALAFHGQAQEALSLFRRMSKDNGTVQPNDITFIGVLSACVH 445
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 103/174 (59%), Gaps = 8/174 (4%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
++++ Y G++ AR+ FD+M +RD V W +MI GY ++ +EA+ LF EM+
Sbjct: 168 SLITMYARCGEMGFARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEGFEP 227
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--- 127
DE T+VS+L A +L L LG W++ ++ + K++ + + G+ALIDMY C D+ A+
Sbjct: 228 DEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISARRVF 287
Query: 128 -----KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
KD +W +I G A +G ++A+ +F+ M A PD V + VLSAC+
Sbjct: 288 DSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACS 341
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 81/173 (46%), Gaps = 9/173 (5%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRV-NRFREALTLFQEMQTSNIMG 70
++S+ I+ + A F+Q+ + + + M+ G ++ + L+ ++++ +
Sbjct: 67 LLSKIIDLKDLAYASLVFNQLTKPNIYAFNVMLRGLATTWKKYDFCVELYYKLKSLGLKA 126
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV------- 123
+ FT + A N+R L G+ + K + D + ++LI MY C ++
Sbjct: 127 NNFTYPFLFIACGNVRGLVHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVF 186
Query: 124 -EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E +D SW +MI G + G +A+ +F +M +PDE+ V VL AC
Sbjct: 187 DEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGAC 239
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 27/174 (15%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
DV +A++ Y G +D A + F+ MP ++ V W AMI + +EAL+LF+ M
Sbjct: 363 HDVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMISALAFHGQAQEALSLFRRM 422
Query: 64 QTSN--IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
N + ++ T + +L+A + +D G + ++ + + +
Sbjct: 423 SKDNGTVQPNDITFIGVLSACVHAGLVDEGRQLFESMNLS---------------FGLVP 467
Query: 122 DVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
VE ++ M+ A +G +A D+ +M KPDE+ +L AC
Sbjct: 468 KVEH-------YSCMVDLCARAGLLYEAWDLIKKM---PGKPDEIVLGSLLGAC 511
>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 658
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 109/189 (57%), Gaps = 11/189 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DVISWT +++ Y G ++ A F+ +P +D V WTAM+ G+ + + +EAL F
Sbjct: 211 MPERDVISWTELIAAYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYF 270
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN--KVKNDIFAGNALIDMYC 118
M+ S I DE T+ ++A A L A + K+ + + G+ALIDMY
Sbjct: 271 DRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYS 330
Query: 119 ICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYV 169
C +VE+A K+ FS+++MI+GLA G +ALD+F M+ + +IKP+ V +V
Sbjct: 331 KCGNVEEAVNVFVSMNNKNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTVTFV 390
Query: 170 GVLSACTHN 178
G L+AC+H+
Sbjct: 391 GALTACSHS 399
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 80/190 (42%), Gaps = 39/190 (20%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
R+ + + R+ LWTA+I GY +F EA+ ++ M+ I FT ++L A +
Sbjct: 103 PRRVIEPVQFRNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGS 162
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------------- 127
+ L+LG + + ++ GN +IDMY C + A+
Sbjct: 163 MGDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTEL 222
Query: 128 ----------------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165
KD +WT M+ G A + +AL+ F +M ++ I+ DE
Sbjct: 223 IAAYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADE 282
Query: 166 VAYVGVLSAC 175
V G +SAC
Sbjct: 283 VTVAGYISAC 292
>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 795
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 104/185 (56%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D+ISW A++S Y+N +++ A F +MPER+ + WT MI G + E L LF
Sbjct: 352 MPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLF 411
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M++ + ++ +TA + L +LD G+ I + + + + + AGNALI MY C
Sbjct: 412 NQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRC 471
Query: 121 ADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VE A+ D SW MI LA G+G KA+++F QM++ I PD + ++ +L
Sbjct: 472 GVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTIL 531
Query: 173 SACTH 177
+AC H
Sbjct: 532 TACNH 536
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 96/217 (44%), Gaps = 49/217 (22%)
Query: 8 SWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN 67
SWT +++ Y+ + AR+ D + V W AMI GY+R + EA F+ M +
Sbjct: 219 SWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMG 278
Query: 68 IMGDEFTIVSILTA----RANLRALDLGEWIKTYI------------------------- 98
I DE+T S+++A + + G + YI
Sbjct: 279 IQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTK 338
Query: 99 -----------DKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVG 139
DK V+ DI + NA++ Y +E+A +++ +WT MI G
Sbjct: 339 YDRMIEARRVFDKMPVR-DIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISG 397
Query: 140 LAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
LA +G G++ L +F+QM ++P + A+ G ++AC+
Sbjct: 398 LAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACS 434
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 93/229 (40%), Gaps = 55/229 (24%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRVNRFREALT 58
+ D+++ T ++S Y + G V +A+Q F+ P RD V + AMI Y N AL
Sbjct: 66 IPKPDIVARTTLLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALN 125
Query: 59 LFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAG--NALIDM 116
LF +M+ + D FT S+L+A +L A + + + K+ + NAL+
Sbjct: 126 LFVQMKRYGFLPDPFTFSSVLSA-LSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSC 184
Query: 117 YCICA-------------------DVEKAQKDKFSWTTMIVGLA---------------- 141
Y CA + K Q + SWTTMI G
Sbjct: 185 YVCCASSPLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLT 244
Query: 142 ----------ISG---NG--DKALDMFSQMLRASIKPDEVAYVGVLSAC 175
ISG G ++A D F +M I+ DE Y ++SAC
Sbjct: 245 YPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISAC 293
>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 512
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 112/188 (59%), Gaps = 10/188 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D+ +W ++++ Y G ++ A + F++MP R+ + WTA+I GY + ++ +AL +F
Sbjct: 143 MPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMF 202
Query: 61 QEMQTS-NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
++ +E +I S+L A + L ALD+G+ I+ Y N + + NA+++++
Sbjct: 203 IGLENEKGTKPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLELHAR 262
Query: 120 CADVEKAQ---------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C ++E+AQ ++ SW TMI+GLA+ G AL ++ QML ++PD+V +VG
Sbjct: 263 CGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDDVTFVG 322
Query: 171 VLSACTHN 178
+L ACTH
Sbjct: 323 LLLACTHG 330
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 84/196 (42%), Gaps = 42/196 (21%)
Query: 23 DIARQC--FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80
D+ C FDQ+P+ L+ I + + L+ +M + ++++ +
Sbjct: 31 DLPYACTLFDQIPKPSVYLYNKFIQTFSSIGHPHRCWLLYCQMCSQGCSPNQYSFTFLFP 90
Query: 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFS 132
A A+L + G+ + ++ K+ +D+FA AL+DMY + A+ +D +
Sbjct: 91 ACASLFNVYPGQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPT 150
Query: 133 WTTMIVGLAISGNGDKALDMFSQMLRASI------------------------------- 161
W ++I G A SG+ + AL++F++M ++
Sbjct: 151 WNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGLENEKG 210
Query: 162 -KPDEVAYVGVLSACT 176
KP+EV+ VL AC+
Sbjct: 211 TKPNEVSIASVLPACS 226
>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
Length = 694
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 104/193 (53%), Gaps = 20/193 (10%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV +++ Y G++ + + F P RD V W +MI +++ EAL LFQEM+
Sbjct: 170 DVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEME 229
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
T N+ + T+V +L+A A + G W+ +YI++N++ + NA++DMY C VE
Sbjct: 230 TQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVE 289
Query: 125 KA--------QKDKFSWTTMIV------------GLAISGNGDKALDMFSQMLRASIKPD 164
A +KD SWTTM+V GLA+ G+G A+ +FS+M +KP+
Sbjct: 290 DAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPN 349
Query: 165 EVAYVGVLSACTH 177
V + +L AC+H
Sbjct: 350 AVTFTNILCACSH 362
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 9/163 (5%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-QTSNIMGDEFTIVSILT 80
+D A+Q FDQ+P + W +I Y + ++L +F M S D+FT ++
Sbjct: 85 LDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIK 144
Query: 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD--------VEKAQKDKFS 132
A + L L G+ + K + +D+F N+LI Y C + V ++D S
Sbjct: 145 AASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVS 204
Query: 133 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
W +MI G ++AL++F +M ++KP+ + VGVLSAC
Sbjct: 205 WNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSAC 247
>gi|255549842|ref|XP_002515972.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544877|gb|EEF46392.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 546
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 106/187 (56%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+++SW ++V G + +ARQ FD MP+RD + W+++IDGY++ + +A+ +F
Sbjct: 175 MPVKNLVSWNSMVDGSAKCGNMVLARQLFDLMPDRDVLSWSSLIDGYVKNGDYGDAMVVF 234
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M+ S +E T+VS+L A A+L ALD G + Y+ NK+ + +L+DMY C
Sbjct: 235 DKMRVSGPKPNEVTMVSVLCACAHLGALDKGRMMHHYVIDNKLPLTLVLCTSLVDMYAKC 294
Query: 121 ADVEKA----------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
+ +A D W MI GLA G ++LD+F +M +KPDE+ Y+
Sbjct: 295 GAINEAFDVFRGIPAELSDVLLWNAMIGGLATHGLVKESLDLFKEMNFVGVKPDEITYLS 354
Query: 171 VLSACTH 177
+L AC H
Sbjct: 355 LLHACAH 361
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 39/177 (22%)
Query: 40 WTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYID 99
W +I GY + ++++F +M + D T ++ A A L +LG I +I
Sbjct: 82 WNTVIRGYSKSKNPNGSISVFIQMLKVGVFPDYLTYPFLVKASARLLKRELGFSIHAHII 141
Query: 100 KNKVKNDIFAGNALIDMYCICADVEKAQ-------------------------------- 127
K+ ++D F N+L+ MY D+ A+
Sbjct: 142 KHGFESDRFISNSLVHMYASFGDISCARYVFDGMPVKNLVSWNSMVDGSAKCGNMVLARQ 201
Query: 128 -------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+D SW+++I G +G+ A+ +F +M + KP+EV V VL AC H
Sbjct: 202 LFDLMPDRDVLSWSSLIDGYVKNGDYGDAMVVFDKMRVSGPKPNEVTMVSVLCACAH 258
>gi|255579341|ref|XP_002530515.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529919|gb|EEF31847.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 359
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 115/189 (60%), Gaps = 13/189 (6%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+S+T ++ Y G + AR F++ P+RD + W+A+I GY + + EA+ +F
Sbjct: 135 MPERNVVSFTVMIDGYAKAGDMTTARDLFERAPKRDVIAWSALISGYAQNGQPNEAVRIF 194
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV---KNDIFAGNALIDMY 117
EM++ N+ DE+ +VS+++A + L +LDL W Y+ K+ + + + A ALIDM
Sbjct: 195 LEMESKNVKPDEYIMVSLMSACSQLGSLDLARWADCYLSKSSIDIGQTHVIA--ALIDMN 252
Query: 118 CICADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
C ++E+A+K D ++ +MI GL+I G ++A+ +F++ML S+ PDE A+
Sbjct: 253 AKCGNMERAKKLFEEMPKRDLITYCSMIQGLSIHGCAEQAVGLFNRMLNESLIPDEAAFT 312
Query: 170 GVLSACTHN 178
VL+AC+
Sbjct: 313 VVLTACSRG 321
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 86/177 (48%), Gaps = 31/177 (17%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+SWTA+V Y+N G + A + FDQMPER+ W AMIDG+++ A +F
Sbjct: 73 MTQKNVVSWTAMVVGYLNVGDLGNAERLFDQMPERNLKSWNAMIDGWVKAGDLLLARKVF 132
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM N++ FT++ ID D+ L +
Sbjct: 133 DEMPERNVV--SFTVM---------------------IDGYAKAGDMTTARDLFE----- 164
Query: 121 ADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
++D +W+ +I G A +G ++A+ +F +M ++KPDE V ++SAC+
Sbjct: 165 ---RAPKRDVIAWSALISGYAQNGQPNEAVRIFLEMESKNVKPDEYIMVSLMSACSQ 218
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G ++ A++ F++MP+RD + + +MI G +A+ LF M +++ DE +L
Sbjct: 256 GNMERAKKLFEEMPKRDLITYCSMIQGLSIHGCAEQAVGLFNRMLNESLIPDEAAFTVVL 315
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK 125
TA + +D G + Y + K GN + +C + ++
Sbjct: 316 TACSRGGLVDEG---RHYFETMKTSEVCSFGNPAMAPSFVCPEADR 358
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV------- 123
D++T S++ ++ L G + + V +D++ G++L+D Y C ++
Sbjct: 11 DKYTYPSLIRVFSSEFRLKEGGIVHGSAIRCGVSDDVYVGSSLVDFYGKCKEILSARKMF 70
Query: 124 -EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIK 162
E QK+ SWT M+VG G+ A +F QM ++K
Sbjct: 71 DEMTQKNVVSWTAMVVGYLNVGDLGNAERLFDQMPERNLK 110
>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 685
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 109/181 (60%), Gaps = 8/181 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N DV + T+++S Y G+++ A + F+++PER V WTA+ GY + REA+ LF++
Sbjct: 143 NHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLFKK 202
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M + D + IV +L+A ++ LD GEWI ++++ +++ + F L+++Y C
Sbjct: 203 MVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGK 262
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+EKA +KD +W+TMI G A + + ++ F QML+ ++KPD+ + VG LS+
Sbjct: 263 MEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSS 322
Query: 175 C 175
C
Sbjct: 323 C 323
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 96/176 (54%), Gaps = 8/176 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T +V+ Y G+++ AR FD M E+D V W+ MI GY + +E + F +M N+
Sbjct: 251 TTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLK 310
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV------ 123
D+F+IV L++ A+L ALDLGEW + ID+++ ++F NALIDMY C +
Sbjct: 311 PDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEV 370
Query: 124 --EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
E +KD I GLA +G+ + +F Q + I PD ++G+L C H
Sbjct: 371 FKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVH 426
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 14/157 (8%)
Query: 31 QMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTS--NIMGDEFTIVSILTARANLRAL 88
Q P + L+ +I+G++ + F E L LF ++ N+ G F +V RA+ R L
Sbjct: 72 QFP--NIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASNRKL 129
Query: 89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTMIVGL 140
+ + + + K +D+ A +L+ +Y + A K +WT + G
Sbjct: 130 GID--LHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGY 187
Query: 141 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+G +A+D+F +M+ ++PD V VLSAC H
Sbjct: 188 TTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVH 224
>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
Length = 724
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 100/177 (56%), Gaps = 8/177 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+A+V Y G +D A+ FD MP + V W A+I G+ R AL L +MQ N
Sbjct: 228 SALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQ 287
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK- 128
FT S+ +A A++ AL+ G+W+ ++ K+ +K F GN L+DMY ++ A++
Sbjct: 288 PTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRV 347
Query: 129 -------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
D SW TM+ G A G G + LD F QMLR I+P+E++++ VL+AC+H+
Sbjct: 348 FDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHS 404
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 94/172 (54%), Gaps = 8/172 (4%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
IV+ Y G +D AR+ FD+MP +D V WTA+I G+ + NR R+AL LF +M + +
Sbjct: 129 IVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPN 188
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ---- 127
FT+ S+L A + LD G + + K ++ ++ G+AL+DMY C ++ AQ
Sbjct: 189 HFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFD 248
Query: 128 ----KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
K + SW +I G A G G+ AL + +M R + +P Y V SAC
Sbjct: 249 GMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSAC 300
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 59/117 (50%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
++ Y G +D A++ FD++ + D V W M+ G + +E L F++M I +
Sbjct: 331 LLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPN 390
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
E + + +LTA ++ LD G + + K KV+ D+ +D+ +++A++
Sbjct: 391 EISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAER 447
>gi|357127896|ref|XP_003565613.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Brachypodium distachyon]
Length = 500
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 108/184 (58%), Gaps = 9/184 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+KD+ W ++S Y+ G + AR+ FD MP R+ V WT +I Y ++ + EA+ +F+
Sbjct: 132 DKDIFCWNVMISGYVKSGNLACARELFDVMPARNVVSWTTVIGAYAQMKQPVEAVEVFRR 191
Query: 63 MQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
MQ I D ++S+L+A +L A+DLGEW+ ++ + + I NA+IDMY
Sbjct: 192 MQVEEGIEPDGVALLSVLSACGDLGAVDLGEWVHRFVVRRGLCWQIPLMNAIIDMYVKLG 251
Query: 122 DVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
V KA QK +WTT+I G A+ G G +A++MF +M ++ P++V ++ +LS
Sbjct: 252 CVRKAVEVFEGMDQKSVVTWTTVIAGFALHGLGLEAIEMFRRMEMENVAPNDVTFLAILS 311
Query: 174 ACTH 177
AC+H
Sbjct: 312 ACSH 315
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
AI+ Y+ G V A + F+ M ++ V WT +I G+ EA+ +F+ M+ N+
Sbjct: 242 AIIDMYVKLGCVRKAVEVFEGMDQKSVVTWTTVIAGFALHGLGLEAIEMFRRMEMENVAP 301
Query: 71 DEFTIVSILTARANLRALDLGEW-IKTYIDKNKVKNDIFAGNALIDM 116
++ T ++IL+A +++ DLG W K + + ++K + ++D+
Sbjct: 302 NDVTFLAILSACSHVGLTDLGRWYFKIMVSQYRIKQRVEHYGCMVDL 348
>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
Length = 582
Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats.
Identities = 60/174 (34%), Positives = 104/174 (59%), Gaps = 8/174 (4%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
+++ Y+ G++D R+ FD+MP + + W AMI+GY + L L++EM++ D
Sbjct: 154 LLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEMESKGFCPD 213
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ---- 127
T+V +L++ A+L AL +G+ ++ ++ ++ F NAL++MY C +++KA+
Sbjct: 214 PLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFD 273
Query: 128 ----KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
K SWT +I G + G G+ A+ +F +M+R IKPD A+V VLSAC+H
Sbjct: 274 GMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSH 327
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 10/178 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN 67
T+++S Y +D AR+ FD+ P+ + V + +++ GY +R ++ + LF EM+
Sbjct: 49 TSLISMYGKCSLIDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELG 108
Query: 68 IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV---- 123
+ + T++ ++ L LG + + K + D GN L+ MY ++
Sbjct: 109 VEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGR 168
Query: 124 ----EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
E +K +W MI G A +G + L+++ +M PD + VGVLS+C H
Sbjct: 169 KLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAH 226
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 37/71 (52%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+V+ Y G + AR FD MP + V WTA+I GY + A+ LF EM I
Sbjct: 254 ALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKP 313
Query: 71 DEFTIVSILTA 81
D VS+L+A
Sbjct: 314 DGTAFVSVLSA 324
>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 792
Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats.
Identities = 64/176 (36%), Positives = 100/176 (56%), Gaps = 8/176 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+ + Y +++ AR+ FD+ PE+ W AMI GY + +A++LF+EMQ S
Sbjct: 358 TALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFS 417
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
+ TI IL+A A L AL LG+W+ + ++ I+ ALI MY C + +A
Sbjct: 418 PNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRL 477
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+K++ +W TMI G + G+G +AL +FS+ML + I P V ++ VL AC+H
Sbjct: 478 FDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSH 533
Score = 75.5 bits (184), Expect = 8e-12, Method: Composition-based stats.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 9/175 (5%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-QTSNIMG 70
IV Y +V+ AR+ FD+MPE+D +LW MI GY + + E++ +F+++ S
Sbjct: 160 IVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRL 219
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA---- 126
D T++ IL A A L+ L LG I + K + + I +Y C ++ A
Sbjct: 220 DTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLF 279
Query: 127 ----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+ D ++ MI G +G + +L +F +++ + K V ++ H
Sbjct: 280 REFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGH 334
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 11/176 (6%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T +S Y G++ +A F + D V + AMI GY +L+LF+E+ S
Sbjct: 260 TGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAK 319
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
T+VS++ +L L I Y K+ + AL +Y ++E A
Sbjct: 320 LKSSTLVSLVPVSGHLM---LIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKL 376
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+K SW MI G +G + A+ +F +M + P+ V +LSAC
Sbjct: 377 FDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQ 432
>gi|115441803|ref|NP_001045181.1| Os01g0914600 [Oryza sativa Japonica Group]
gi|20804987|dbj|BAB92663.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113534712|dbj|BAF07095.1| Os01g0914600 [Oryza sativa Japonica Group]
Length = 589
Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats.
Identities = 67/185 (36%), Positives = 103/185 (55%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++D++ W +++ Y G++D AR F++MPER+ + W+ +IDGY+R EAL F
Sbjct: 239 MPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFF 298
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
Q M I D V + A A L AL+ G W+ +Y++K KV D+ ALIDMY C
Sbjct: 299 QRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKC 358
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ A +K +W MIVGL G G A+ +F+QM D+++ + VL
Sbjct: 359 GRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSILAVL 418
Query: 173 SACTH 177
++CTH
Sbjct: 419 TSCTH 423
Score = 49.7 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
Query: 54 REALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNAL 113
R +L F M+ + + D +T ++L A +G + + + D+F NAL
Sbjct: 98 RRSLLYFSRMRRAAVAPDAYTFPAVLKACGCAPGCRVGLVVHGEAVRTGLDADLFTRNAL 157
Query: 114 IDMYCICADVEKAQK-------DKFSWTTMIVGLAISGNGDKALDMFSQM 156
I YC D +K D SW +M+ G G D A D+F +M
Sbjct: 158 ISFYCRIGDCRSGRKVFDHGVRDLVSWNSMVAGYVGCGEVDLAQDLFDEM 207
Score = 38.9 bits (89), Expect = 0.76, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E+A + F W T+ V L + + ++L FS+M RA++ PD + VL AC
Sbjct: 76 EEASRHAFPWNTL-VRLHAAASPRRSLLYFSRMRRAAVAPDAYTFPAVLKAC 126
>gi|147798551|emb|CAN72187.1| hypothetical protein VITISV_012899 [Vitis vinifera]
Length = 690
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 100/178 (56%), Gaps = 3/178 (1%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW +V Y G++DIAR FD+MPERD + AM+ GY++ EAL F
Sbjct: 335 MPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGXLMEALXFF 394
Query: 61 QEMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+M + + T++ L+A A L D G + YI+ N G ALIDMY
Sbjct: 395 HDMLSXKELFPXNATLLITLSAIAQLGHFDEGVALHCYIEDNGFSLSEKLGXALIDMYAK 454
Query: 120 CADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
C ++ A D W +J GLAI G G+ A ++F +M + +KPB++ ++GVL+AC H
Sbjct: 455 CGSIDNALID--HWNAIJXGLAIHGLGEVAFELFMEMEKLFVKPBDITFIGVLNACNH 510
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 74/163 (45%), Gaps = 19/163 (11%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF--QE 62
DV ++ Y+ G + IARQ FD+M RD V + +MIDGY++ + A LF
Sbjct: 212 DVFLQNCLMCLYLRCGCLGIARQLFDRMMXRDSVSFNSMIDGYVKHGMVKSARELFDVMP 271
Query: 63 MQTSNIMGDEFTIVSILTARANLR-ALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
M+ N++ I + LR A +L E + K D+ + N++ID C
Sbjct: 272 MEQKNLISWNSMISGYARSEEGLRVAWELFEEMP--------KRDLISWNSMIDGCVKCG 323
Query: 122 DVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQM 156
+E A +D SW M+ G A G D A +F +M
Sbjct: 324 KMENAHHLFNXMPKRDVVSWANMVDGYAKLGEIDIARGLFDEM 366
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 8/126 (6%)
Query: 39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYI 98
LW A+I + EA +F M + + D+F+ +L A + L + G I +
Sbjct: 145 LWNAIIKSFSHGEDPXEAFXIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQIHGLL 204
Query: 99 DKNKVKNDIFAGNALIDMY--CICADVEKA------QKDKFSWTTMIVGLAISGNGDKAL 150
++ +D+F N L+ +Y C C + + +D S+ +MI G G A
Sbjct: 205 GXMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMXRDSVSFNSMIDGYVKHGMVKSAR 264
Query: 151 DMFSQM 156
++F M
Sbjct: 265 ELFDVM 270
>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 589
Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats.
Identities = 62/187 (33%), Positives = 112/187 (59%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D+ +W ++++ Y G ++ A + F++MP R+ + WTA+I GY + ++ +AL +F
Sbjct: 143 MPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMF 202
Query: 61 QEMQTSN-IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
++ +E +I S+L A + L ALD+G+ I+ Y N + + NA+++++
Sbjct: 203 IGLENEKGTKPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLELHAR 262
Query: 120 CADVEKAQ---------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C ++E+AQ ++ SW TMI+GLA+ G AL ++ QML ++PD+V +VG
Sbjct: 263 CGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDDVTFVG 322
Query: 171 VLSACTH 177
+L ACTH
Sbjct: 323 LLLACTH 329
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 71/144 (49%), Gaps = 10/144 (6%)
Query: 23 DIARQC--FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80
D+ C FDQ+P+ L+ I + + L+ +M + ++++ +
Sbjct: 31 DLPYACTLFDQIPKPSVYLYNKFIQTFSSIGHPHRCWLLYCQMCSQGCSPNQYSFTFLFP 90
Query: 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFS 132
A A+L + G+ + ++ K+ +D+FA AL+DMY + A+ +D +
Sbjct: 91 ACASLFNVYPGQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPT 150
Query: 133 WTTMIVGLAISGNGDKALDMFSQM 156
W ++I G A SG+ + AL++F++M
Sbjct: 151 WNSLIAGYARSGHMEAALELFNKM 174
>gi|449439631|ref|XP_004137589.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 113/192 (58%), Gaps = 15/192 (7%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + +V+ W ++++ Y+ RG D AR+ FD+MPER+ WT M+ G+ + + + AL+LF
Sbjct: 191 MPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSLF 250
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN----KVKNDIFAGNALIDM 116
+M+ + + D+ +V+ L+A A L L LG+WI Y+++ + + NALI M
Sbjct: 251 DQMRRAGVELDQVALVAALSACAELGDLTLGKWIHGYVERTWRSRHLPVLVSLNNALIHM 310
Query: 117 YCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQML---RASIKPDE 165
Y C ++ A Q++ SW+++I G A G G +A+ +F ML + ++PDE
Sbjct: 311 YASCGAMDLAYKLFEEIPQRNTVSWSSIITGFAKQGCGVEAIRIFQLMLCSGQNEVRPDE 370
Query: 166 VAYVGVLSACTH 177
+ ++G L+AC+H
Sbjct: 371 ITFIGALTACSH 382
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 91/208 (43%), Gaps = 44/208 (21%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
++S YI+ G + A++ F+ + +W +I G+ R ++++ LF+ M + + +
Sbjct: 65 LLSLYISFGSLGSAQKVFEDITAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEAN 124
Query: 72 EFTIVSILTA--RANL---------RALDLGEWIKTYIDKNKVK---------------- 104
FT +L+A R+ L R L G W Y+ N +
Sbjct: 125 GFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWSNLYVRTNLINLYANGGDGGDFDLKRA 184
Query: 105 ---------NDIFAGNALIDMYCICADVEKAQK--------DKFSWTTMIVGLAISGNGD 147
+++ N+L+ Y D + A+K + +WT M+ G A +G
Sbjct: 185 LYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQCK 244
Query: 148 KALDMFSQMLRASIKPDEVAYVGVLSAC 175
AL +F QM RA ++ D+VA V LSAC
Sbjct: 245 LALSLFDQMRRAGVELDQVALVAALSAC 272
>gi|255541290|ref|XP_002511709.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548889|gb|EEF50378.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 450
Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 101/186 (54%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + +ISW +V Y G VDIAR+ FD MP+RD V AM+ GY++ EAL +F
Sbjct: 257 MPERTIISWANMVDGYAKLGYVDIARKFFDNMPDRDVVACNAMMSGYVQNGYCMEALGIF 316
Query: 61 QEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+MQ SN+ D T++ +L+A A L ++ G I YI +N + G ALIDMY
Sbjct: 317 HDMQRESNLCPDNATLLIVLSAIAQLGHIEKGVEIHCYIQENGFSLEEKLGVALIDMYSK 376
Query: 120 CADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C E A K W MI GLAI G G+ AL +M R KPD++ ++G+
Sbjct: 377 CGSAENAMLVFEGIKGKTADHWNAMINGLAIHGMGELALHFLIEMERVGSKPDDITFIGL 436
Query: 172 LSACTH 177
L+AC H
Sbjct: 437 LNACGH 442
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 8/131 (6%)
Query: 34 ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEW 93
+ D LW A+I + N ++AL +F M + + D+F++ +L A + L + G
Sbjct: 62 KEDPFLWNAVIKTHSHGNDPKQALIIFSLMLQNGVFVDKFSVSLVLKACSRLGLVKEGMQ 121
Query: 94 IKTYIDKNKVKNDIFAGNALIDMY--CICADVEK------AQKDKFSWTTMIVGLAISGN 145
I + K K +D+F N LI +Y C C D + +D S+ +MI G GN
Sbjct: 122 IHGLLRKLKFGSDVFLQNCLIGLYVKCRCIDYARQVFDKMPMRDSVSYNSMIAGYVKHGN 181
Query: 146 GDKALDMFSQM 156
D A ++ M
Sbjct: 182 IDLARQLYDVM 192
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRV-NRFREAL 57
M +D +S+ ++++ Y+ G +D+ARQ +D MP R+ V W +++ GY+R N F A
Sbjct: 161 MPMRDSVSYNSMIAGYVKHGNIDLARQLYDVMPINWRNLVSWNSLLSGYMRSDNGFELAW 220
Query: 58 TLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
LF++M +++ +++ R R D T ++ I + ++D Y
Sbjct: 221 NLFEKMPERDLISWN-SMIDGCAKRG--RMEDAQALFDTMPERT-----IISWANMVDGY 272
Query: 118 CICADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAY 168
V+ A+K D + M+ G +G +AL +F M R S + PD
Sbjct: 273 AKLGYVDIARKFFDNMPDRDVVACNAMMSGYVQNGYCMEALGIFHDMQRESNLCPDNATL 332
Query: 169 VGVLSA 174
+ VLSA
Sbjct: 333 LIVLSA 338
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 13/160 (8%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV ++ Y+ +D ARQ FD+MP RD V + +MI GY++ A L+ M
Sbjct: 134 DVFLQNCLIGLYVKCRCIDYARQVFDKMPMRDSVSYNSMIAGYVKHGNIDLARQLYDVMP 193
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ +VS + + D G + + + + D+ + N++ID +E
Sbjct: 194 I-----NWRNLVSWNSLLSGYMRSDNGFELAWNLFEKMPERDLISWNSMIDGCAKRGRME 248
Query: 125 KAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQM 156
AQ + SW M+ G A G D A F M
Sbjct: 249 DAQALFDTMPERTIISWANMVDGYAKLGYVDIARKFFDNM 288
>gi|255541270|ref|XP_002511699.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548879|gb|EEF50368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 474
Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 101/186 (54%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + +ISW +V Y G VDIAR+ FD MP+RD V AM+ GY++ EAL +F
Sbjct: 281 MPERTIISWANMVDGYAKLGYVDIARKFFDNMPDRDVVACNAMMSGYVQNGYCMEALGIF 340
Query: 61 QEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+MQ SN+ D T++ +L+A A L ++ G I YI +N + G ALIDMY
Sbjct: 341 HDMQRESNLCPDNATLLIVLSAIAQLGHIEKGVEIHCYIQENGFSLEEKLGVALIDMYSK 400
Query: 120 CADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C E A K W MI GLAI G G+ AL +M R KPD++ ++G+
Sbjct: 401 CGSAENAMLVFEGIKGKTADHWNAMINGLAIHGMGELALHFLIEMERVGSKPDDITFIGL 460
Query: 172 LSACTH 177
L+AC H
Sbjct: 461 LNACGH 466
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 8/131 (6%)
Query: 34 ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEW 93
+ D LW A+I + N ++AL +F M + + D+F++ +L A + L + G
Sbjct: 86 KEDPFLWNAVIKTHSHGNDPKQALIIFSLMLQNGVFVDKFSVSLVLKACSRLGLVKEGMQ 145
Query: 94 IKTYIDKNKVKNDIFAGNALIDMY--CICADVEK------AQKDKFSWTTMIVGLAISGN 145
I + K K +D+F N LI +Y C C D + +D S+ +MI G GN
Sbjct: 146 IHGLLRKLKFGSDVFLQNCLIGLYVKCRCIDYARQVFDKMPMRDSVSYNSMIAGYVKHGN 205
Query: 146 GDKALDMFSQM 156
D A ++ M
Sbjct: 206 IDLARQLYDVM 216
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRV-NRFREAL 57
M +D +S+ ++++ Y+ G +D+ARQ +D MP R+ V W +++ GY+R N F A
Sbjct: 185 MPMRDSVSYNSMIAGYVKHGNIDLARQLYDVMPINWRNLVSWNSLLSGYMRSDNGFELAW 244
Query: 58 TLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
LF++M +++ +++ R R D T ++ I + ++D Y
Sbjct: 245 NLFEKMPERDLISWN-SMIDGCAKRG--RMEDAQALFDTMPERT-----IISWANMVDGY 296
Query: 118 CICADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAY 168
V+ A+K D + M+ G +G +AL +F M R S + PD
Sbjct: 297 AKLGYVDIARKFFDNMPDRDVVACNAMMSGYVQNGYCMEALGIFHDMQRESNLCPDNATL 356
Query: 169 VGVLSA 174
+ VLSA
Sbjct: 357 LIVLSA 362
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 13/160 (8%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV ++ Y+ +D ARQ FD+MP RD V + +MI GY++ A L+ M
Sbjct: 158 DVFLQNCLIGLYVKCRCIDYARQVFDKMPMRDSVSYNSMIAGYVKHGNIDLARQLYDVMP 217
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ +VS + + D G + + + + D+ + N++ID +E
Sbjct: 218 I-----NWRNLVSWNSLLSGYMRSDNGFELAWNLFEKMPERDLISWNSMIDGCAKRGRME 272
Query: 125 KAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQM 156
AQ + SW M+ G A G D A F M
Sbjct: 273 DAQALFDTMPERTIISWANMVDGYAKLGYVDIARKFFDNM 312
>gi|125573086|gb|EAZ14601.1| hypothetical protein OsJ_04525 [Oryza sativa Japonica Group]
Length = 616
Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 67/185 (36%), Positives = 103/185 (55%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++D++ W +++ Y G++D AR F++MPER+ + W+ +IDGY+R EAL F
Sbjct: 239 MPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFF 298
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
Q M I D V + A A L AL+ G W+ +Y++K KV D+ ALIDMY C
Sbjct: 299 QRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKC 358
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ A +K +W MIVGL G G A+ +F+QM D+++ + VL
Sbjct: 359 GRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSILAVL 418
Query: 173 SACTH 177
++CTH
Sbjct: 419 TSCTH 423
Score = 49.7 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
Query: 54 REALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNAL 113
R +L F M+ + + D +T ++L A +G + + + D+F NAL
Sbjct: 98 RRSLLYFSRMRRAAVAPDAYTFPAVLKACGCAPGCRVGLVVHGEAVRTGLDADLFTRNAL 157
Query: 114 IDMYCICADVEKAQK-------DKFSWTTMIVGLAISGNGDKALDMFSQM 156
I YC D +K D SW +M+ G G D A D+F +M
Sbjct: 158 ISFYCRIGDCRSGRKVFDHGVRDLVSWNSMVAGYVGCGEVDLAQDLFDEM 207
Score = 38.9 bits (89), Expect = 0.75, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E+A + F W T+ V L + + ++L FS+M RA++ PD + VL AC
Sbjct: 76 EEASRHAFPWNTL-VRLHAAASPRRSLLYFSRMRRAAVAPDAYTFPAVLKAC 126
>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g30700; AltName: Full=Protein DYW9
gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 792
Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 99/176 (56%), Gaps = 8/176 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+ + Y +++ AR+ FD+ PE+ W AMI GY + +A++LF+EMQ S
Sbjct: 358 TALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFS 417
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
+ TI IL+A A L AL LG+W+ + ++ I+ ALI MY C + +A
Sbjct: 418 PNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRL 477
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+K++ +W TMI G + G G +AL++F +ML + I P V ++ VL AC+H
Sbjct: 478 FDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSH 533
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 87/184 (47%), Gaps = 9/184 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ +++ + IV Y +V+ AR+ FD+MPE+D +LW MI GY + + E++ +F++
Sbjct: 151 DSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRD 210
Query: 63 M-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
+ S D T++ IL A A L+ L LG I + K + + I +Y C
Sbjct: 211 LINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCG 270
Query: 122 DV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+ E + D ++ MI G +G + +L +F +++ + + V ++
Sbjct: 271 KIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVP 330
Query: 174 ACTH 177
H
Sbjct: 331 VSGH 334
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 11/174 (6%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T +S Y G++ + F + + D V + AMI GY +L+LF+E+ S
Sbjct: 260 TGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAR 319
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
T+VS++ +L L I Y K+ + AL +Y ++E A
Sbjct: 320 LRSSTLVSLVPVSGHLM---LIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKL 376
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+K SW MI G +G + A+ +F +M ++ P+ V +LSAC
Sbjct: 377 FDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSAC 430
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 25/166 (15%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ Y G + AR+ FD M +++ V W MI GY + +EAL +F EM S I
Sbjct: 459 TALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGIT 518
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
T + +L A ++ + G ++IF N++I Y V+
Sbjct: 519 PTPVTFLCVLYACSHAGLVKEG-------------DEIF--NSMIHRYGFEPSVKH---- 559
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ L +G+ +AL M SI+P + +L AC
Sbjct: 560 ---YACMVDILGRAGHLQRALQFIEAM---SIEPGSSVWETLLGAC 599
>gi|224141025|ref|XP_002323875.1| predicted protein [Populus trichocarpa]
gi|222866877|gb|EEF04008.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 103/181 (56%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+SW+ +V ++ G+++ AR FDQMPERD V WT M+ Y + REAL L+ M
Sbjct: 168 DVVSWSGLVLAHVRAGELERARWVFDQMPERDVVSWTTMVSAYSQAKYSREALELYVTML 227
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ DE T+VS+++A NL L +G + +YID+N + + NALIDMY C ++
Sbjct: 228 DKGVRPDEVTLVSVISACTNLGDLQMGYSVHSYIDENGFRWMVSLCNALIDMYAKCGCMD 287
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+A +K +W +MI A + N + A +FS+M + PD V ++ VL+A
Sbjct: 288 RAWQVFNSMSRKSLVTWNSMISACANNRNPEDAFGLFSRMFNYGVAPDGVTFLAVLTAYA 347
Query: 177 H 177
H
Sbjct: 348 H 348
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 47/204 (23%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G + A++ FDQ+P + + +I GY + + +L L +M+ + + DEFT ++
Sbjct: 43 GDLAYAQRLFDQLPHPNTFFYNTLIRGYAKSSIPSYSLHLVNQMRQNGVDPDEFTFNFLI 102
Query: 80 TARANLRA-----LDL---GEWIKTYIDKNKVKNDIFAGNALIDMYCI------------ 119
AR+ +R L L + I + K + +F NALI +Y
Sbjct: 103 KARSRVRVNINRNLPLVVECDEIHGAVLKLGFSSHLFVRNALIHLYAARGNPVVAWRVFD 162
Query: 120 -------------------CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDM 152
++E+A ++D SWTTM+ + + +AL++
Sbjct: 163 ETVGVDVVSWSGLVLAHVRAGELERARWVFDQMPERDVVSWTTMVSAYSQAKYSREALEL 222
Query: 153 FSQMLRASIKPDEVAYVGVLSACT 176
+ ML ++PDEV V V+SACT
Sbjct: 223 YVTMLDKGVRPDEVTLVSVISACT 246
>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 679
Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 109/183 (59%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ DV +++V Y +++ + + F + RD + W +++ GY++ R+ EAL LF++
Sbjct: 238 DSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQ 297
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M ++ + S++ A A+L L LG+ + Y+ + +IF +AL+DMY C +
Sbjct: 298 MVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGN 357
Query: 123 VEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
++ A+K D+ SWT +I+G A+ G+G +A+ +F +M R +KP++VA+V VL+A
Sbjct: 358 IQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTA 417
Query: 175 CTH 177
C+H
Sbjct: 418 CSH 420
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 101/181 (55%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ + A+++ Y +D R+ F+ MP +D V + +I GY + + +AL + +EM
Sbjct: 139 DLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMG 198
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
TS++ D FT+ S+L + + G+ I Y+ + + +D++ G++L+DMY A +E
Sbjct: 199 TSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIE 258
Query: 125 KAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
++ +D SW +++ G +G ++AL +F QM+ A ++P VA+ V+ AC
Sbjct: 259 DSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACA 318
Query: 177 H 177
H
Sbjct: 319 H 319
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 8/173 (4%)
Query: 8 SWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN 67
S + ++S Y N + A F + + W ++I + + F AL F EM+ S
Sbjct: 41 SASIVISIYTNLKLLHEALLVFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASG 100
Query: 68 IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK-- 125
D S+L + + L GE + +I + + D++ GNAL++MY ++
Sbjct: 101 RCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVR 160
Query: 126 ------AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+KD S+ T+I G A SG + AL M +M + +KPD VL
Sbjct: 161 KVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVL 213
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 82/174 (47%), Gaps = 25/174 (14%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+++ +A+V Y G + AR+ FD+M D V WTA+I G+ EA++LF+E
Sbjct: 339 GRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEE 398
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M+ + ++ V++LTA +++ +D W Y + ++ N ++ Y AD
Sbjct: 399 MKRQGVKPNQVAFVAVLTACSHVGLVDEA-W--GYFNS---MTKVYGLNQELEHYAAVAD 452
Query: 123 VEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+ L +G ++A D S+M ++P + +LS+C+
Sbjct: 453 L----------------LGRAGKLEEAYDFISKM---RVEPTGSVWSTLLSSCS 487
>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 705
Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 105/191 (54%), Gaps = 14/191 (7%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+S T++VS Y V AR F M ER+ V W A+I GY + EA+ LF
Sbjct: 314 MPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLF 373
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV------KNDIFAGNALI 114
++ +I +T ++L A ANL L LG T+I K+ +DIF GN+LI
Sbjct: 374 LLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLI 433
Query: 115 DMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 166
DMY C VE ++D SW MIVG A +G G +AL++F +ML + +PD V
Sbjct: 434 DMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHV 493
Query: 167 AYVGVLSACTH 177
+GVLSAC+H
Sbjct: 494 TMIGVLSACSH 504
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 98/184 (53%), Gaps = 8/184 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ ++ SW A++ G +D A F MPERD W AM+ G+ + +RF EAL
Sbjct: 80 MQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFV 139
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M + + + +E++ S L+A A L L +G I I K++ D++ G+AL+DMY C
Sbjct: 140 VDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKC 199
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
V AQ ++ SW ++I +G KAL++F +M+ I+PDE+ V
Sbjct: 200 RVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVA 259
Query: 173 SACT 176
SAC
Sbjct: 260 SACA 263
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 93/183 (50%), Gaps = 13/183 (7%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV +A+V Y V A++ FD M R+ V W ++I Y + +AL +F M
Sbjct: 185 DVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMM 244
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN-KVKNDIFAGNALIDMYCICADV 123
I DE T+ S+ +A A+L A+ G I + K+ K +ND+ GNAL+DMY C V
Sbjct: 245 NCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRV 304
Query: 124 EKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+A+ +D S T+M+ G A + + A MFS M+ ++ V++ +++
Sbjct: 305 NEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNV----VSWNALIAGY 360
Query: 176 THN 178
T N
Sbjct: 361 TQN 363
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 25/174 (14%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
++ D+ +++ Y+ G V+ R F++M ERD V W AMI GY + EAL +F+
Sbjct: 422 EDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFR 481
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
EM S D T++ +L+A ++ ++ G + Y +++ +
Sbjct: 482 EMLVSGERPDHVTMIGVLSACSHAGLVEEG---RCYFQSMTIEHGLV------------- 525
Query: 122 DVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
KD + T M+ L +G D+A ++ M ++PD V + +L+AC
Sbjct: 526 ----PVKDHY--TCMVDLLGRAGCLDEANNLIQTM---PMEPDAVVWGSLLAAC 570
Score = 38.5 bits (88), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 94 IKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGN 145
+ I K + ++IF N L+D+Y C +E A Q++ FSW ++ L G
Sbjct: 41 VHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQRNTFSWNAVLGALTKFGA 100
Query: 146 GDKALDMFSQM 156
D+AL++F M
Sbjct: 101 LDEALNLFKCM 111
>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
Length = 682
Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 104/182 (57%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
++V TA+V Y G ++ AR FD M E++ V W++MI GY +EAL LF +M
Sbjct: 242 RNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKM 301
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ D + +V +L + A L AL+LG+W I+ N+ ++ G ALIDMY C +
Sbjct: 302 LNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRM 361
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
++A +KD+ W I GLA+SG+ AL +F QM ++ IKPD +VG+L AC
Sbjct: 362 DRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCAC 421
Query: 176 TH 177
TH
Sbjct: 422 TH 423
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 103/180 (57%), Gaps = 8/180 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D ++++ Y G +D A + FD +P++++ WTA I GY+ V + REA+ +F+ +
Sbjct: 142 DAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLL 201
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ D F++V +L+A L GEWI YI +N + ++F AL+D Y C ++E
Sbjct: 202 EMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNME 261
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+A +K+ SW++MI G A +G +ALD+F +ML +KPD A VGVL +C
Sbjct: 262 RARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCA 321
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 82/167 (49%), Gaps = 8/167 (4%)
Query: 17 INRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIV 76
N G + + + DQ E + L+ MI G + + F+E++ ++ M+ + D FT
Sbjct: 53 FNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFP 112
Query: 77 SILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QK 128
+L A A + +LG + + + K + D F +LI++Y C ++ A K
Sbjct: 113 FVLKACARVLDSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDK 172
Query: 129 DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ SWT I G G +A+DMF ++L ++PD + V VLSAC
Sbjct: 173 NFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSAC 219
>gi|224141027|ref|XP_002323876.1| predicted protein [Populus trichocarpa]
gi|222866878|gb|EEF04009.1| predicted protein [Populus trichocarpa]
Length = 410
Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 103/181 (56%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+SW+ +V ++ G+++ AR FDQMPERD V WT M+ Y + REAL L+ M
Sbjct: 136 DVVSWSGLVLAHVRAGELERARWVFDQMPERDVVSWTTMVSAYSQAKYSREALELYVTML 195
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ DE T+VS+++A NL L +G + +YID+N + + NALIDMY C ++
Sbjct: 196 DKGVRPDEVTLVSVISACTNLGDLQMGYSVHSYIDENGFRWMVSLCNALIDMYAKCGCMD 255
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+A +K +W +MI A + N + A +FS+M + PD V ++ VL+A
Sbjct: 256 RAWQVFNSMSRKSLVTWNSMISACANNRNPEDAFGLFSRMFNYGVAPDGVTFLAVLTAYA 315
Query: 177 H 177
H
Sbjct: 316 H 316
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 90/205 (43%), Gaps = 47/205 (22%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G + A++ FDQ+P + + +I GY + + +L L +M+ + + DEFT ++
Sbjct: 11 GDLAYAQRLFDQLPHPNTFFYNTLIRGYAKSSIPSYSLHLVNQMRQNGVDPDEFTFNFLI 70
Query: 80 TARANLRA-----LDL---GEWIKTYIDKNKVKNDIFAGNALIDMYCI------------ 119
AR+ +R L L + I + K + +F NALI +Y
Sbjct: 71 KARSRVRVNINRNLPLVVECDEIHGAVLKLGFSSHLFVRNALIHLYAARGNPVVAWRVFD 130
Query: 120 -------------------CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDM 152
++E+A ++D SWTTM+ + + +AL++
Sbjct: 131 ETVGVDVVSWSGLVLAHVRAGELERARWVFDQMPERDVVSWTTMVSAYSQAKYSREALEL 190
Query: 153 FSQMLRASIKPDEVAYVGVLSACTH 177
+ ML ++PDEV V V+SACT+
Sbjct: 191 YVTMLDKGVRPDEVTLVSVISACTN 215
>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 781
Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 101/185 (54%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V +W +++ Y G++ A+ FD+MP+RD V W AMI GY + EAL LF
Sbjct: 338 MPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLF 397
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M+ + + S L+ A++ AL+LG+ + + K + F GNAL+ MYC C
Sbjct: 398 VQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKC 457
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E+A KD SW TMI G + G G+ AL F M R +KPD+ V VL
Sbjct: 458 GSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVL 517
Query: 173 SACTH 177
SAC+H
Sbjct: 518 SACSH 522
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 88/184 (47%), Gaps = 16/184 (8%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW I++ Y G++D ARQ FD+ P +D WTAM+ GY++ EA LF
Sbjct: 245 MNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELF 304
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M N E + ++L +++ K D +N + N +I Y C
Sbjct: 305 DKMPERN----EVSWNAMLAGYVQGERMEMA---KELFDVMPCRN-VSTWNTMITGYAQC 356
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ +A ++D SW MI G + SG+ +AL +F QM R + + ++ L
Sbjct: 357 GKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSAL 416
Query: 173 SACT 176
S C
Sbjct: 417 STCA 420
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 81/164 (49%), Gaps = 16/164 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV SW ++S Y G VD AR FD+MPE++ V W A++ Y++ ++ EA LF
Sbjct: 152 MPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLF 211
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ + ++ + + + + A + + D V+ D+ + N +I Y
Sbjct: 212 KSRENWALVSWNCLLGGFVKKKKIVEA-------RQFFDSMNVR-DVVSWNTIITGYAQS 263
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQM 156
+++A+ +D F+WT M+ G + ++A ++F +M
Sbjct: 264 GKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKM 307
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 47/188 (25%)
Query: 7 ISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTS 66
+S+ ++S Y+ G+ ++AR+ FD+MPERD V W MI GY+R +A LF+ M
Sbjct: 96 VSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPER 155
Query: 67 NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY--------- 117
++ + ++L+ A +D ++ D+ KND+ + NAL+ Y
Sbjct: 156 DVC----SWNTMLSGYAQNGCVDDA---RSVFDRMPEKNDV-SWNALLSAYVQNSKMEEA 207
Query: 118 ----------------CICADVEKAQK--------------DKFSWTTMIVGLAISGNGD 147
C+ K +K D SW T+I G A SG D
Sbjct: 208 CMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKID 267
Query: 148 KALDMFSQ 155
+A +F +
Sbjct: 268 EARQLFDE 275
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 35/176 (19%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ D+ W +S Y+ G+ + A + F +MP V + MI GYLR F A LF E
Sbjct: 61 DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDE 120
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M +++ I + R +A +L E +
Sbjct: 121 MPERDLVSWNVMIKGYVRNRNLGKARELFEIM---------------------------- 152
Query: 123 VEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
++D SW TM+ G A +G D A +F +M + ++V++ +LSA N
Sbjct: 153 ---PERDVCSWNTMLSGYAQNGCVDDARSVFDRM----PEKNDVSWNALLSAYVQN 201
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
A++ Y G ++ A F +M +D V W MI GY R AL F+ M+ +
Sbjct: 448 NALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLK 507
Query: 70 GDEFTIVSILTARANLRALDLG 91
D+ T+V++L+A ++ +D G
Sbjct: 508 PDDATMVAVLSACSHTGLVDKG 529
>gi|242084708|ref|XP_002442779.1| hypothetical protein SORBIDRAFT_08g002705 [Sorghum bicolor]
gi|241943472|gb|EES16617.1| hypothetical protein SORBIDRAFT_08g002705 [Sorghum bicolor]
Length = 560
Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 65/183 (35%), Positives = 107/183 (58%), Gaps = 11/183 (6%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+++ W + + R + G + A + F MPERD + W ++I GY ++ + AL +F++M
Sbjct: 249 RNISWWNSEIMRNVRLGDLVEAARIFRDMPERDVISWNSLISGYAKLGMYSRALDVFRDM 308
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
++I E T+VS L A A + L+LG I Y+ ++ D + GNAL+DMY C ++
Sbjct: 309 WKNDIEPTELTVVSALGACAEVGELELGRGIHDYLKSKGIEADGYVGNALVDMYAKCGNL 368
Query: 124 EKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ A+ KD W TMIVGL++ G+ AL +F M +I+PD V ++GVL+AC
Sbjct: 369 KLARQVFDSMSIKDVTCWNTMIVGLSVHGHSHDALKLFDLM---NIEPDHVTFLGVLTAC 425
Query: 176 THN 178
+H+
Sbjct: 426 SHS 428
>gi|224097410|ref|XP_002310922.1| predicted protein [Populus trichocarpa]
gi|222850742|gb|EEE88289.1| predicted protein [Populus trichocarpa]
Length = 554
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 109/192 (56%), Gaps = 15/192 (7%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+ W ++++ Y+ RG +D AR+ F +MPER+ V WT MI GY + + ++AL LF
Sbjct: 193 MSERNVVCWNSMLAGYMRRGNLDGARRIFYEMPERNVVSWTTMISGYAKNGKCKQALNLF 252
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKND----IFAGNALIDM 116
+M+ + + D+ +++ LTA A L L +G WI +YI V ++ + NALI M
Sbjct: 253 DQMRKAGVELDQVVLLAALTACAELGDLKMGMWIHSYIQDTFVGSNQRVLVSLNNALIHM 312
Query: 117 YCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLR---ASIKPDE 165
Y C +++A ++ SWT++I A G L++F M R + +PD
Sbjct: 313 YASCGMIDEAYEVFRWMPERSAVSWTSLITAFAKQGYAQAVLEIFRSMQRLGTSEARPDG 372
Query: 166 VAYVGVLSACTH 177
+ ++GVL AC+H
Sbjct: 373 ITFIGVLCACSH 384
Score = 42.4 bits (98), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 39/197 (19%), Positives = 74/197 (37%), Gaps = 45/197 (22%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A F + +LW MI + R +++ F +M ++ D T +L A +
Sbjct: 79 AHYVFKDIQSPSTILWNQMIRAHARSQTPAKSIQFFNQMLLTDSRPDAHTYSFLLAACTS 138
Query: 85 LRALDLGEWIKTYIDKNKV-KNDIFAGNALIDMYCICADVEKA-------------QKDK 130
+L G+ + + + N +++F + L++ Y E A +++
Sbjct: 139 SLSLREGQQVHSKVLTNGYYSSNVFLMSKLVNFYAAVVGGEGAALASARKVFDDMSERNV 198
Query: 131 FSWT-------------------------------TMIVGLAISGNGDKALDMFSQMLRA 159
W TMI G A +G +AL++F QM +A
Sbjct: 199 VCWNSMLAGYMRRGNLDGARRIFYEMPERNVVSWTTMISGYAKNGKCKQALNLFDQMRKA 258
Query: 160 SIKPDEVAYVGVLSACT 176
++ D+V + L+AC
Sbjct: 259 GVELDQVVLLAALTACA 275
>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 776
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 101/185 (54%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V +W +++ Y G++ A+ FD+MP+RD V W AMI GY + EAL LF
Sbjct: 333 MPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLF 392
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M+ + + S L+ A++ AL+LG+ + + K + F GNAL+ MYC C
Sbjct: 393 VLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKC 452
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E+A KD SW TMI G + G G++AL F M R +KPD+ V VL
Sbjct: 453 GSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVL 512
Query: 173 SACTH 177
SAC+H
Sbjct: 513 SACSH 517
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 86/184 (46%), Gaps = 16/184 (8%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK +DV+SW I++ Y G++D ARQ FD+ P D WTAM+ GY++ EA LF
Sbjct: 240 MKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELF 299
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M N E + ++L +++ K D +N + N +I Y C
Sbjct: 300 DRMPERN----EVSWNAMLAGYVQGERVEMA---KELFDVMPCRN-VSTWNTMITGYAQC 351
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ +A ++D SW MI G + SG+ +AL +F M R + + ++ L
Sbjct: 352 GKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSAL 411
Query: 173 SACT 176
S C
Sbjct: 412 STCA 415
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 83/164 (50%), Gaps = 16/164 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV SW I+S Y G VD AR+ FD+MPE++ V W A++ Y++ ++ EA LF
Sbjct: 147 MPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLF 206
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ ++ + + + + A + + D KV+ D+ + N +I Y
Sbjct: 207 GSRENWALVSWNCLLGGFVKKKKIVEA-------RQFFDSMKVR-DVVSWNTIITGYAQN 258
Query: 121 ADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQM 156
++++A++ D F+WT M+ G + ++A ++F +M
Sbjct: 259 GEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRM 302
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 47/188 (25%)
Query: 7 ISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTS 66
+S+ A++S Y+ G+ ++AR FD+MPERD V W MI GY+R +A LF+ M
Sbjct: 91 VSYNAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPER 150
Query: 67 NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY--------- 117
++ + +IL+ A +D + D+ KND+ + NAL+ Y
Sbjct: 151 DVC----SWNTILSGYAQNGCVDDA---RRVFDRMPEKNDV-SWNALLSAYVQNSKLEEA 202
Query: 118 ----------------CICADVEKAQK--------------DKFSWTTMIVGLAISGNGD 147
C+ K +K D SW T+I G A +G D
Sbjct: 203 CVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEID 262
Query: 148 KALDMFSQ 155
+A +F +
Sbjct: 263 EARQLFDE 270
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 35/176 (19%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ D+ W +S Y+ G+ A + F +MP V + AMI GYLR F A LF E
Sbjct: 56 DSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDE 115
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M +++ I + R +A +L E +
Sbjct: 116 MPERDLVSWNVMIKGYVRNRNLGKARELFERM---------------------------- 147
Query: 123 VEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
++D SW T++ G A +G D A +F +M + ++V++ +LSA N
Sbjct: 148 ---PERDVCSWNTILSGYAQNGCVDDARRVFDRM----PEKNDVSWNALLSAYVQN 196
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 10/149 (6%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G ++ A F +M +D V W MI GY R EAL F+ M+ +
Sbjct: 444 ALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKP 503
Query: 71 DEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
D+ T+V++L+A ++ +D G ++ T V+ + ++D+ +E+A
Sbjct: 504 DDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNL 563
Query: 127 ------QKDKFSWTTMIVGLAISGNGDKA 149
+ D W T++ + GN + A
Sbjct: 564 MKNMPFEPDAAIWGTLLGASRVHGNTELA 592
>gi|357138796|ref|XP_003570973.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Brachypodium distachyon]
Length = 472
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 104/185 (56%), Gaps = 10/185 (5%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ + + TA+++ Y G AR+ FD+M RD V+WT M+ GY+ EA+ +FQE
Sbjct: 151 SSHLFTQTALMNMYFVCGLAAPARRVFDEMQARDVVVWTGMVSGYVDTGMHLEAVEVFQE 210
Query: 63 MQTSNIMGDE--FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M+ + TIVS+ +A A L +L+ +W+ Y++K +D+ NAL+DMY C
Sbjct: 211 MRRGEEVASPNVATIVSVASACAGLGSLEYAKWLHGYVEKLGFGSDLIVTNALMDMYGKC 270
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VE A +KD SWTT+I GLA G+ + L +FS M + + PD ++ VL
Sbjct: 271 GGVESARALFNLMHEKDLHSWTTIISGLASHGHVKEGLALFSSMQKMGVLPDSTTFIVVL 330
Query: 173 SACTH 177
SAC+H
Sbjct: 331 SACSH 335
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
D+I A++ Y G V+ AR F+ M E+D WT +I G +E L LF
Sbjct: 254 GSDLIVTNALMDMYGKCGGVESARALFNLMHEKDLHSWTTIISGLASHGHVKEGLALFSS 313
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYID-KNKVKNDIFAGNALIDMY 117
MQ ++ D T + +L+A ++ +D G I ++ K KV DI ++D++
Sbjct: 314 MQKMGVLPDSTTFIVVLSACSHAGLVDEGMCIFNSMESKYKVTPDIKHYGCMVDLF 369
>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 727
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 110/182 (60%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+ + + TA+V Y G + AR+ FD + ERD LWT++I GY++ + EAL L++ M
Sbjct: 355 RHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRM 414
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+T+ I+ ++ T+ S+L A ++L L+LG+ + + K+ ++ G+AL MY C +
Sbjct: 415 KTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSL 474
Query: 124 E--------KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E KD SW MI GL+ +G GD+AL++F +ML ++PD+V +V ++SAC
Sbjct: 475 EDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISAC 534
Query: 176 TH 177
+H
Sbjct: 535 SH 536
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 88/182 (48%), Gaps = 10/182 (5%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ T++V Y G V+ + F MPER+ W+ M+ GY R EA+ +F
Sbjct: 152 DIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFL 211
Query: 65 TSNIMG--DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
G ++ ++L++ A + LG I KN + + NAL+ MY C
Sbjct: 212 REKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCES 271
Query: 123 VEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+ +A K + +W+ M+ G + +G +A+ +FS+M A IKP E VGVL+A
Sbjct: 272 LNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNA 331
Query: 175 CT 176
C+
Sbjct: 332 CS 333
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 96/175 (54%), Gaps = 10/175 (5%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+V+ Y ++ A + FD +R+ + W+AM+ GY + EA+ LF M ++ I
Sbjct: 261 ALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKP 320
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY----CICADVEKA 126
E+TIV +L A +++ L+ G+ + +++ K + +FA AL+DMY C+ AD K
Sbjct: 321 SEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCL-ADARKG 379
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
++D WT++I G + + ++AL ++ +M A I P++ VL AC+
Sbjct: 380 FDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACS 434
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 88/176 (50%), Gaps = 13/176 (7%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALT---LFQEMQTSNI 68
+V+ Y G++ A F+ + +D V W ++I GY + + T LF+EM+ +I
Sbjct: 55 LVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDI 114
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA-- 126
+ + +T+ I A ++L++ +G + K DI+ +L+ MYC VE
Sbjct: 115 LPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLK 174
Query: 127 ------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV--GVLSA 174
+++ ++W+TM+ G A G ++A+ +F+ LR + + YV VLS+
Sbjct: 175 VFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSS 230
>gi|255548718|ref|XP_002515415.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545359|gb|EEF46864.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 507
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 106/186 (56%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ +D +SW +++S YI G ++ F +MP ++ V W MI G L+ F L LF
Sbjct: 173 MEVRDFVSWNSMISAYIRAGDMEKGLALFREMPVKNTVTWNTMITGCLQSEHFGMVLDLF 232
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EM+T+N + D T+ S+L+ +L +L G I Y N + + ALIDMY C
Sbjct: 233 EEMKTANYIPDYLTVTSVLSTCGHLGSLGTGIKIHIYAIDNGLVSSPHVTTALIDMYSKC 292
Query: 121 ADVE-------KAQ-KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E K+Q KD + W +I LA+ G+G AL +F +M + I+PD++ ++G++
Sbjct: 293 GSIEQGLHVFCKSQVKDIYCWNALISALALHGHGYAALKVFGKMRKNHIQPDDITFIGII 352
Query: 173 SACTHN 178
+AC+H+
Sbjct: 353 NACSHS 358
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 77/176 (43%), Gaps = 16/176 (9%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V+ Y N + A + F+ MP +D + W +M+D Y + A LF M +I
Sbjct: 89 TALVNMYGNLHCIGDAFKVFEIMPVKDLIAWNSMLDAYASNAQMDYASNLFNSMPLKDIS 148
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-- 127
I T + A ++ D +V+ D + N++I Y D+EK
Sbjct: 149 SFNIMISGYSTRGEAMLA-------RSIFDSMEVR-DFVSWNSMISAYIRAGDMEKGLAL 200
Query: 128 ------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
K+ +W TMI G S + LD+F +M A+ PD + VLS C H
Sbjct: 201 FREMPVKNTVTWNTMITGCLQSEHFGMVLDLFEEMKTANYIPDYLTVTSVLSTCGH 256
>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 109/186 (58%), Gaps = 11/186 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMP-ERDYVLWTAMIDGYLRVNRFREALTL 59
M +D +SW +I+S Y+ GQV+ AR F++MP R+ V WTAMI+GY + F E L+L
Sbjct: 154 MGFRDEVSWNSIISGYVQWGQVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSL 213
Query: 60 FQEMQTS--NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
F++M S + + T+V +L+A + L ++G ++ +ID NK+ + ALIDMY
Sbjct: 214 FRQMLVSADEVQPNAATMVCLLSACSTLCNYEVGRFLSVFIDVNKIPLNTILVTALIDMY 273
Query: 118 CICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
C DVEKA K+ SW +I G G ++A+D++ M S+KP+E+ V
Sbjct: 274 SKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLV 333
Query: 170 GVLSAC 175
VLSAC
Sbjct: 334 NVLSAC 339
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 106/177 (59%), Gaps = 8/177 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ Y G V+ A + FD + ++ W A+I G ++ EA+ L++ M+ ++
Sbjct: 267 TALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVK 326
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
+E T+V++L+A A L AL+LG + Y+ +N + ++ AL+DMY C ++ A
Sbjct: 327 PNEITLVNVLSACAGLGALELGREVHLYLGRNGLDLNVILATALVDMYAKCGKIDDACLI 386
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+KD W MI+GLA G+G +L +FSQM+RA ++P++V ++GVLSAC H+
Sbjct: 387 FVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHS 443
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 8/155 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T ++ + I+ +D AR DQ P W ++I Y + +L L+ +M S+
Sbjct: 31 THLIPKLIDLHSIDYARFVLDQTPSPTDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTK 90
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-- 127
FT +L A + L ++ GE I T++ + +D+F N+LIDMYC C ++ A+
Sbjct: 91 PSNFTFPFVLKACSTLGSVLEGEQIHTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNF 150
Query: 128 ------KDKFSWTTMIVGLAISGNGDKALDMFSQM 156
+D+ SW ++I G G +KA D+F +M
Sbjct: 151 WDDMGFRDEVSWNSIISGYVQWGQVEKARDLFEEM 185
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 25/171 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+VI TA+V Y G++D A F + E+D LW AMI G R++L +F +M
Sbjct: 363 NVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMV 422
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ + ++ T + +L+A N L +++ +V+ +++ D + + +E
Sbjct: 423 RAGVQPNDVTFIGVLSA-CNHSGL---------VEEGRVQF-----SSMADKHGLSPKLE 467
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ L +G+ +A ++ ML I PD + + +LSAC
Sbjct: 468 H-------YACMVDLLGRAGHLKEAYELVQNML---IPPDSIIWGALLSAC 508
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
FSW ++I + G+ +L ++ +MLR+S KP + VL AC+
Sbjct: 59 FSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACS 104
>gi|356506146|ref|XP_003521848.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Glycine max]
Length = 503
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 112/190 (58%), Gaps = 12/190 (6%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++++++SW ++ I G+V++A F+QMP R V WT +IDGY R N+ +ALTLF
Sbjct: 184 MQHRNLVSWNVFITGLIKWGEVELACSVFNQMPARSVVSWTLVIDGYTRRNQPIKALTLF 243
Query: 61 QEM-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKN-DIFAGNALIDMYC 118
++M + I E T+++I A AN+ + + + + Y++K D+ NAL+D+Y
Sbjct: 244 RKMIEVDGIEPTEVTLLTIFPAIANIGCIKICQSVHVYVEKRGFNAFDVRITNALLDLYA 303
Query: 119 ICA----------DVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
C ++ +++ SWT+ I G A++G G +AL+ F M + ++P+ V +
Sbjct: 304 KCGCIASMSRFFQEIPDQRRNLVSWTSTISGFAMNGMGREALESFESMEKTGLRPNHVTF 363
Query: 169 VGVLSACTHN 178
+GVLSAC+H
Sbjct: 364 LGVLSACSHG 373
>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
Length = 747
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 107/182 (58%), Gaps = 9/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DVI++TA+++ Y+ G + ARQ F+ + + D V WTAMI GY++ +A+ +F+ M
Sbjct: 307 DVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMV 366
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ + FT+ ++L+A +++ +L+ G+ I ++ GNAL MY +
Sbjct: 367 SEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSIN 426
Query: 125 KAQK---------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
A+K D SWT+MI+ LA G G++A+++F QML IKPD + YVGVLSAC
Sbjct: 427 GARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSAC 486
Query: 176 TH 177
TH
Sbjct: 487 TH 488
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 101/215 (46%), Gaps = 40/215 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K SW I+S Y +G+++ A Q FD +P RD V WT +I GY ++ RF +A+ +F
Sbjct: 36 MPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIF 95
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M ++ +FT+ ++L + A + +G+ + +++ K + + N+L++MY
Sbjct: 96 VDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKT 155
Query: 121 ADVEKA---------------------------------------QKDKFSWTTMIVGLA 141
D++ A ++D SW +MI G
Sbjct: 156 GDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCN 215
Query: 142 ISGNGDKALDMFSQMLR-ASIKPDEVAYVGVLSAC 175
G ++AL FS +L+ S+KPD + LSAC
Sbjct: 216 QHGFDNEALQFFSSILKDTSLKPDRFSLASALSAC 250
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 97/218 (44%), Gaps = 42/218 (19%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK ++ SW A++S ++N G+VD+A F+ + ERD V W +MI G + EAL F
Sbjct: 168 MKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFF 227
Query: 61 QE-MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
++ +++ D F++ S L+A ANL L G+ I YI + GNALI MY
Sbjct: 228 SSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAK 287
Query: 120 CADVEKAQK-----------------------------------------DKFSWTTMIV 138
VE A++ D +WT MIV
Sbjct: 288 SGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIV 347
Query: 139 GLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
G +G + A+++F M+ +P+ +LSA +
Sbjct: 348 GYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASS 385
>gi|357517181|ref|XP_003628879.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522901|gb|AET03355.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 633
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 73/184 (39%), Positives = 104/184 (56%), Gaps = 12/184 (6%)
Query: 6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT 65
V +WT++VS Y RG+V +AR+ FDQM ERD V WTAMI GY F+EAL LF +++
Sbjct: 289 VAAWTSLVSAYALRGEVKVARRLFDQMGERDVVSWTAMISGYSHAGCFQEALELFVKLEG 348
Query: 66 SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAG--NALIDMYCICADV 123
+ DE +V+ L+A A L AL+LG I I G +A++DMY C +
Sbjct: 349 LGMKPDEVAVVAALSACARLGALELGRRIHRQYAGENWTCSINRGFTSAVVDMYAKCGSI 408
Query: 124 EKA----------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+ A +K F + ++I GLA G G+ A ++F +M +KPD + +V VLS
Sbjct: 409 DIALDVFRKTSDDKKTTFLYNSIISGLAHHGRGEYAKNLFEEMGLLGLKPDNITFVAVLS 468
Query: 174 ACTH 177
AC H
Sbjct: 469 ACGH 472
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 11/159 (6%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRF-REALTLFQEMQTSNIMGDEFTIVSILTARAN--L 85
F Q+ D LW A+I Y +++ + +LF+ M S+++ D FT +L A AN +
Sbjct: 72 FTQITNPDIFLWNAIIKAYSQIHSPPQHPFSLFKTMLNSSVLPDSFTFPFLLKACANVLI 131
Query: 86 RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTMI 137
A G + ++ +N +D+F NAL++ YC DV A K D S+ TMI
Sbjct: 132 SAPQFGFQVHCHVLRNGFGSDVFVNNALLNFYCGFGDVVNAYKVFDESFVRDCVSFNTMI 191
Query: 138 VGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
G A G+ +F +M ++PDE +V +LS C+
Sbjct: 192 NGFARKGDVSGCFRVFGEMRGVCVRPDEYTFVALLSGCS 230
Score = 72.4 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 55/214 (25%), Positives = 89/214 (41%), Gaps = 43/214 (20%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV A+++ Y G V A + FD+ RD V + MI+G+ R +F EM+
Sbjct: 152 DVFVNNALLNFYCGFGDVVNAYKVFDESFVRDCVSFNTMINGFARKGDVSGCFRVFGEMR 211
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIK--TYIDKNKVKNDIFAGNALIDMYCICAD 122
+ DE+T V++L+ + L +G + Y + ++ N L+DMY C
Sbjct: 212 GVCVRPDEYTFVALLSGCSVLEDYRIGRQVHGLVYRELGCFGGNVLLVNKLVDMYAKCGR 271
Query: 123 V-----------------------------------------EKAQKDKFSWTTMIVGLA 141
+ + ++D SWT MI G +
Sbjct: 272 LVMAETVLSVVKPGKSVVAAWTSLVSAYALRGEVKVARRLFDQMGERDVVSWTAMISGYS 331
Query: 142 ISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+G +AL++F ++ +KPDEVA V LSAC
Sbjct: 332 HAGCFQEALELFVKLEGLGMKPDEVAVVAALSAC 365
Score = 40.4 bits (93), Expect = 0.27, Method: Composition-based stats.
Identities = 40/168 (23%), Positives = 74/168 (44%), Gaps = 27/168 (16%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN 67
+A+V Y G +DIA F + + + L+ ++I G R A LF+EM
Sbjct: 396 SAVVDMYAKCGSIDIALDVFRKTSDDKKTTFLYNSIISGLAHHGRGEYAKNLFEEMGLLG 455
Query: 68 IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127
+ D T V++L+A + +D G+ K+ +F +Y + ++E
Sbjct: 456 LKPDNITFVAVLSACGHCGLVDFGK---------KLFESMFT------VYGVSPEMEH-- 498
Query: 128 KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ L +G+ D+A + +L+ K + V + +LSAC
Sbjct: 499 -----YGCMVDLLGRAGHLDEAHRL---ILKMPFKANAVIWRALLSAC 538
>gi|296089760|emb|CBI39579.3| unnamed protein product [Vitis vinifera]
Length = 459
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 104/181 (57%), Gaps = 14/181 (7%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDY-----VLWTAMIDGYLRVNRFREALTLFQEMQT 65
I+ Y + G+++ A++ FD+M +RD V W +MI G + R EAL LF+EM
Sbjct: 147 GIIDLYTSCGRMEDAKKVFDEMLDRDMRDRSVVSWNSMIAGLEQSGRDGEALELFREMWD 206
Query: 66 SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKND-IFAGNALIDMYCICADVE 124
D+ T+V+IL A L A+D+GEWI +Y + +++ D I GN+L+D YC C +E
Sbjct: 207 HGFEPDDATVVTILPVCARLGAVDVGEWIHSYAESSRLLRDFISVGNSLVDFYCKCGILE 266
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A QK+ SW MI GL +G G+ D+F +M+ ++P++ +VGVLS C
Sbjct: 267 TAWRVFNEMPQKNVVSWNAMISGLTFNGKGELGADLFEEMINKGVRPNDATFVGVLSCCA 326
Query: 177 H 177
H
Sbjct: 327 H 327
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 13/161 (8%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88
F Q + +L+ +MI GY +L LF +M+ I DEFT +L + + +
Sbjct: 64 FHQTQNPNLLLFNSMIKGYSLCGPSENSLLLFSQMKNRGIWPDEFTFAPLLKSCSGICDN 123
Query: 89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK-------------DKFSWTT 135
+G+ + + + +ID+Y C +E A+K SW +
Sbjct: 124 RIGKGVHGVVIVVGFERFSSIRIGIIDLYTSCGRMEDAKKVFDEMLDRDMRDRSVVSWNS 183
Query: 136 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
MI GL SG +AL++F +M +PD+ V +L C
Sbjct: 184 MIAGLEQSGRDGEALELFREMWDHGFEPDDATVVTILPVCA 224
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 4 KDVIS-WTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+D IS ++V Y G ++ A + F++MP+++ V W AMI G + LF+E
Sbjct: 246 RDFISVGNSLVDFYCKCGILETAWRVFNEMPQKNVVSWNAMISGLTFNGKGELGADLFEE 305
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLG 91
M + ++ T V +L+ A+ ++ G
Sbjct: 306 MINKGVRPNDATFVGVLSCCAHAGLVERG 334
>gi|242047514|ref|XP_002461503.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
gi|241924880|gb|EER98024.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
Length = 786
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 62/181 (34%), Positives = 101/181 (55%), Gaps = 8/181 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+DV++W A+++ Y+ G V +AR+ FD MP RD V W+ ++ GY++ AL +F+ M
Sbjct: 195 RDVVTWNAVLAGYVRAGMVGVAREVFDGMPMRDEVSWSTVVGGYVKEGELEVALGVFKNM 254
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ +E IV+ L+A A L L+ G+++ I + V + G AL+DMY C V
Sbjct: 255 VVQGVKANEAAIVTALSAAAQLGLLEQGKFVHEVIKRAGVAMSMNLGAALVDMYSKCGSV 314
Query: 124 EKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
A+ +D F+W +MI GLA G G A+ +F + + P + +VGVL+AC
Sbjct: 315 AAAKEVFDAMPWRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTNITFVGVLNAC 374
Query: 176 T 176
+
Sbjct: 375 S 375
Score = 52.4 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 42/166 (25%), Positives = 70/166 (42%), Gaps = 27/166 (16%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+V Y G V A++ FD MP RD W +MI G +A+ LF++ +
Sbjct: 303 ALVDMYSKCGSVAAAKEVFDAMPWRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCP 362
Query: 71 DEFTIVSILTARANLRALDLGEW-IKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
T V +L A + +D G W K +K +++++ ++D+
Sbjct: 363 TNITFVGVLNACSRTGLVDEGRWYFKLMAEKYGIESEMEHYGCMVDL------------- 409
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
L+ +G +A+++ M I PD V + VLSAC
Sbjct: 410 ----------LSRAGLVQEAIELIEGM---HIPPDPVLWGTVLSAC 442
>gi|255594521|ref|XP_002536106.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223520840|gb|EEF26277.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 519
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 103/182 (56%), Gaps = 9/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+VI++TA++ Y+ G + AR FD + + D V WTAMI GY++ +A+ LF+ M
Sbjct: 271 NVIAFTALLDGYVKLGNITPARHIFDSLKDSDVVAWTAMIVGYVQNGLNDDAMELFRIMA 330
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ FT+ ++L+ +N+ +L+ G+ I ++ + GNALI MY +
Sbjct: 331 KEGPRPNSFTLAAMLSVSSNVASLNHGKQIHASAIRSGENLSVSVGNALITMYAKAGSIT 390
Query: 125 KAQ---------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
AQ KD SWT+MI+ L G G +++++F +ML IKPD + YVGVLSAC
Sbjct: 391 DAQQVFNLIQRNKDTVSWTSMIIALGQHGLGQESIELFEKMLALGIKPDHITYVGVLSAC 450
Query: 176 TH 177
TH
Sbjct: 451 TH 452
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 100/214 (46%), Gaps = 39/214 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K SW I++ Y G + A FD++P+RD V WT MI GY ++ RF A+ +F
Sbjct: 1 MPVKTTFSWNTILTGYAKLGTLAKAHSVFDEIPDRDSVSWTTMIVGYNQMGRFESAIKMF 60
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M ++ +FT+ ++ + A L ALD+G+ I +++ K + + N+L++MY
Sbjct: 61 VAMMKDKVLPTQFTVTNVFASCAALGALDIGKKIHSFVIKLGLSGCVPVANSLLNMYAKA 120
Query: 121 ADV---------------------------------------EKAQKDKFSWTTMIVGLA 141
D + +++D +W +MI G +
Sbjct: 121 GDSVMAKIVFDRMRLRSISSWNIMISLHMHGGRADLALAQFEQMSERDVVTWNSMITGYS 180
Query: 142 ISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
G +AL++FS+ML S+KPD +LSAC
Sbjct: 181 QHGFDKEALELFSRMLEDSLKPDRFTLASILSAC 214
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 100/218 (45%), Gaps = 41/218 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ + + SW ++S +++ G+ D+A F+QM ERD V W +MI GY + +EAL LF
Sbjct: 133 MRLRSISSWNIMISLHMHGGRADLALAQFEQMSERDVVTWNSMITGYSQHGFDKEALELF 192
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M ++ D FT+ SIL+A AN+ L+LG+ I +YI + + NALI MY
Sbjct: 193 SRMLEDSLKPDRFTLASILSACANIENLNLGKQIHSYIIRTEFDISGVVQNALISMYAKT 252
Query: 121 ADVEKAQ-----------------------------------------KDKFSWTTMIVG 139
VE AQ D +WT MIVG
Sbjct: 253 GGVEIAQSIVEQSGISDLNVIAFTALLDGYVKLGNITPARHIFDSLKDSDVVAWTAMIVG 312
Query: 140 LAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+G D A+++F M + +P+ +LS ++
Sbjct: 313 YVQNGLNDDAMELFRIMAKEGPRPNSFTLAAMLSVSSN 350
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 77/176 (43%), Gaps = 28/176 (15%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPE-RDYVLWTAMIDGYLRVNRFREALTLF 60
+N V A+++ Y G + A+Q F+ + +D V WT+MI + +E++ LF
Sbjct: 369 ENLSVSVGNALITMYAKAGSITDAQQVFNLIQRNKDTVSWTSMIIALGQHGLGQESIELF 428
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGE-WIKTYIDKNKVKNDIFAGNALIDMYCI 119
++M I D T V +L+A ++ ++ G + +K++ + +ID++
Sbjct: 429 EKMLALGIKPDHITYVGVLSACTHVGLVEQGRGYFNLMTSIHKIEPTLSHYACMIDLFGR 488
Query: 120 CADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+++A FS + I+PD +A+ +LS+C
Sbjct: 489 AGLLQEA--------------------------FSFIENMPIEPDVIAWGSLLSSC 518
>gi|449487105|ref|XP_004157498.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 113/192 (58%), Gaps = 15/192 (7%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + +V+ W ++++ Y+ RG D AR+ FD+MPER+ WT M+ G+ + + + AL+LF
Sbjct: 191 MPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSLF 250
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN----KVKNDIFAGNALIDM 116
+M+ + + D+ +V+ L+A A L L LG+WI Y+++ + + NALI M
Sbjct: 251 DQMRRAGVELDQVALVAALSACAELGDLTLGKWIHGYVERTWRSRHLPVLVSLNNALIHM 310
Query: 117 YCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQML---RASIKPDE 165
Y C ++ A Q++ SW+++I G A G G +A+ +F ML + ++PDE
Sbjct: 311 YASCGVMDLAYKVFEEIPQRNTVSWSSIITGFAKQGCGVEAIRIFQLMLCSGQNEVRPDE 370
Query: 166 VAYVGVLSACTH 177
+ ++G L+AC+H
Sbjct: 371 ITFIGALTACSH 382
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 91/208 (43%), Gaps = 44/208 (21%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
++S YI+ G + A++ F+ + +W +I G+ R ++++ LF+ M + + +
Sbjct: 65 LLSLYISFGSLGSAQKVFEDITAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEAN 124
Query: 72 EFTIVSILTA--RANL---------RALDLGEWIKTYIDKNKVK---------------- 104
FT +L+A R+ L R L G W Y+ N +
Sbjct: 125 GFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWSNLYVRTNLINLYANGGDGGDFDLKRA 184
Query: 105 ---------NDIFAGNALIDMYCICADVEKAQK--------DKFSWTTMIVGLAISGNGD 147
+++ N+L+ Y D + A+K + +WT M+ G A +G
Sbjct: 185 RYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQCK 244
Query: 148 KALDMFSQMLRASIKPDEVAYVGVLSAC 175
AL +F QM RA ++ D+VA V LSAC
Sbjct: 245 LALSLFDQMRRAGVELDQVALVAALSAC 272
>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g59720, mitochondrial; Flags: Precursor
gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 638
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 106/186 (56%), Gaps = 14/186 (7%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV ++ Y + G +D+AR+ FD+MPER V W +MID +R + AL LF+EMQ
Sbjct: 185 DVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQ 244
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN---KVKNDIFAGNALIDMYCICA 121
S D +T+ S+L+A A L +L LG W ++ + V D+ N+LI+MYC C
Sbjct: 245 RS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG 303
Query: 122 DVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQML--RASIKPDEVAYVGV 171
+ A+ +D SW MI+G A G ++A++ F +M+ R +++P+ V +VG+
Sbjct: 304 SLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGL 363
Query: 172 LSACTH 177
L AC H
Sbjct: 364 LIACNH 369
>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 596
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 106/182 (58%), Gaps = 8/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV +++V Y G D A++ FD+MP R+ V WTA+I GY++ F + + +F+EM
Sbjct: 239 DVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEML 298
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
S++ +E T+ S+L+A A++ AL G + Y+ KN ++ + G LID Y C +E
Sbjct: 299 KSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYVIKNSIEINTTVGTTLIDFYAKCGCLE 358
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+A +K+ ++WT MI G A G A+D+F ML + + P+EV ++ VLSAC
Sbjct: 359 EAILVFERLREKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVSPNEVTFIVVLSACA 418
Query: 177 HN 178
H
Sbjct: 419 HG 420
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 100/184 (54%), Gaps = 9/184 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ D+ +++S Y N G + + FD ++D V WTAMIDG++R + EA+T F E
Sbjct: 135 DSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRNDSSLEAMTYFVE 194
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKT-YIDKNKVKNDIFAGNALIDMYCICA 121
M+ S + +E T+VS+L A + G I Y++ +V+ D+F G++L+DMY C
Sbjct: 195 MKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIGSSLVDMYGKCG 254
Query: 122 DVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+ AQK + +WT +I G +K + +F +ML++ + P+E VLS
Sbjct: 255 CYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKTLSSVLS 314
Query: 174 ACTH 177
AC H
Sbjct: 315 ACAH 318
>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Cucumis sativus]
Length = 609
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 69/175 (39%), Positives = 104/175 (59%), Gaps = 8/175 (4%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
++V Y G + A Q F+ M RD V W ++I+G+ EALTL++EM + +
Sbjct: 176 SLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEP 235
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK-- 128
D FT+VS+L+A L AL LGE + Y+ K + + A NAL+D+Y C + AQK
Sbjct: 236 DGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVF 295
Query: 129 ------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
SWT++IVGLA++G G++AL +F ++ R +KP E+ +VGVL AC+H
Sbjct: 296 DEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSH 350
Score = 79.0 bits (193), Expect = 8e-13, Method: Composition-based stats.
Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 9/163 (5%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT-SNIMGDEFTIVSILT 80
+ A Q F+Q+ + W MI G+ A+ LF +M S+I+ D T +
Sbjct: 85 MSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFK 144
Query: 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFS 132
A A L + LGE I + + +N + F N+L+ MY + + A +D+ +
Sbjct: 145 AVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVA 204
Query: 133 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
W ++I G A++G ++AL ++ +M ++PD V +LSAC
Sbjct: 205 WNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSAC 247
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 3/118 (2%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRF-REALTLFQEMQTSNIM 69
A++ Y G A++ FD+M ER V WT++I G L VN EAL LF E++ +
Sbjct: 277 ALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVG-LAVNGLGNEALKLFGELERQGLK 335
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126
E T V +L A ++ LD G + + ++ + I ++D+ C V A
Sbjct: 336 PSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDA 393
>gi|225430506|ref|XP_002283354.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 517
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 100/182 (54%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD++SW +++ N G + AR FD MP+++ + W MI GYL + EA+ LF EM
Sbjct: 180 KDIVSWNSMILACTNVGDMGNARNLFDVMPKKNVITWNTMISGYLHAQLYAEAVDLFDEM 239
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ N D T+ +L+A A+L L G + Y +++ + +LIDMY C +
Sbjct: 240 KAGNHEADHLTVTLVLSACAHLGWLGKGTEMHVYAQDHRLASSPHVATSLIDMYAKCGTI 299
Query: 124 EKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+++ KD + W +I GLA+ G G A+ + +M ++PDE+ ++G+LSAC
Sbjct: 300 QRSLEVFYKSQVKDIYCWNAIISGLALHGYGHAAVKLLDKMRDNGVRPDEITFIGLLSAC 359
Query: 176 TH 177
+H
Sbjct: 360 SH 361
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 16/176 (9%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ Y G +D A + F++M +D V+W +M+ Y + A+ LF M ++
Sbjct: 93 TALLDMYSAFGAIDHATKVFEEMGVKDVVVWNSMLAAYASCGQMDNAMKLFDNMPLKDLA 152
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
F I+ A+ +A ++ D+ K DI + N++I D+ A
Sbjct: 153 --SFNIMISGYAKIGKKAA-----ARSIFDRIHAK-DIVSWNSMILACTNVGDMGNARNL 204
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+K+ +W TMI G + +A+D+F +M + + D + VLSAC H
Sbjct: 205 FDVMPKKNVITWNTMISGYLHAQLYAEAVDLFDEMKAGNHEADHLTVTLVLSACAH 260
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 8/125 (6%)
Query: 40 WTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYID 99
W +I + +A+ + EM+ D FT +L A ++L + +G +
Sbjct: 22 WNKVIKRRVSQGNPDQAILAYVEMKRVGFDADNFTFPVLLKAASSLSSCCIGFALHGQAM 81
Query: 100 KNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALD 151
K F G AL+DMY ++ A KD W +M+ A G D A+
Sbjct: 82 KTGFSGHCFVGTALLDMYSAFGAIDHATKVFEEMGVKDVVVWNSMLAAYASCGQMDNAMK 141
Query: 152 MFSQM 156
+F M
Sbjct: 142 LFDNM 146
>gi|297733830|emb|CBI15077.3| unnamed protein product [Vitis vinifera]
Length = 804
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 111/184 (60%), Gaps = 10/184 (5%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGY-LRVNRFREALTLFQEM 63
D+ ++V+ Y ++ A++ FD+MP+RD + WT+++ GY +R + EAL F +M
Sbjct: 191 DIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGEFYNEALQCFNDM 250
Query: 64 QTSN-IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ + +E +VSIL+A A+L ALD G+WI YIDKN++ ALIDMY C
Sbjct: 251 LCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGR 310
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
++ A ++D +WT+MI GL++ G G + L FS+ML KPD++ +GVL+
Sbjct: 311 IDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNG 370
Query: 175 CTHN 178
C+H+
Sbjct: 371 CSHS 374
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 11/178 (6%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ Y G++D AR+ FD + +RD + WT+MI G E L F EM
Sbjct: 299 TALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFK 358
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK- 128
D+ T++ +L ++ L E + + K+ +++++ GN++I+M + A +E A+K
Sbjct: 359 PDDITLLGVLNGCSH-SGLVEEEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKV 417
Query: 129 -------DKFSWTTMIVGLAISGNGDKA-LDMFSQML-RASIKPDEVAYVGVLSACTH 177
D FSWT+++ G A G D+A L F ML + P+E V VLSAC H
Sbjct: 418 FNQMSERDVFSWTSLLGGYAKHGEMDRASLTFFCNMLCDDRVNPNEAVLVCVLSACAH 475
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 14/181 (7%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPE-RDYVLWTAMIDGYLRVNRFREALTLFQEM--QTSN 67
++ YI + AR FDQ P ++W MI Y + +E+L LF +M
Sbjct: 92 PLIHSYIGCRNLSFARIVFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRP 151
Query: 68 IMGDEFTIVSILTARANLRAL-DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--- 123
D++T + TA + L GE + + K+ ++DIF GN+L++MY I + +
Sbjct: 152 TSADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDA 211
Query: 124 -----EKAQKDKFSWTTMIVGLAISGN-GDKALDMFSQML-RASIKPDEVAYVGVLSACT 176
E Q+D +WT+++ G A+ G ++AL F+ ML +KP+E V +LSAC
Sbjct: 212 KRVFDEMPQRDVITWTSVVKGYAMRGEFYNEALQCFNDMLCHDEVKPNEAVLVSILSACA 271
Query: 177 H 177
H
Sbjct: 272 H 272
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 75/136 (55%), Gaps = 10/136 (7%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRF-REALTLFQEMQTSN-IMGDEFTIVSILTAR 82
AR+ F+QM ERD WT+++ GY + R +LT F M + + +E +V +L+A
Sbjct: 414 ARKVFNQMSERDVFSWTSLLGGYAKHGEMDRASLTFFCNMLCDDRVNPNEAVLVCVLSAC 473
Query: 83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWT 134
A+L ALD G WI YIDK ++ ALIDMY C ++ A ++D S+T
Sbjct: 474 AHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGICKRDVLSFT 533
Query: 135 TMIVGLAISGNGDKAL 150
+MI GL+ G G AL
Sbjct: 534 SMISGLSYHGLGKDAL 549
>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Cucumis sativus]
Length = 788
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 101/177 (57%), Gaps = 9/177 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+ + Y +V ARQ FD+ PE+ W AMI GY + A++LFQEM +
Sbjct: 354 TALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMM-PQLS 412
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-- 127
+ T+ SIL+A A L AL +G+W+ I +++++++ AL+DMY C + +A+
Sbjct: 413 PNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQL 472
Query: 128 ------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
K+ +W MI G + G+G +AL +F +ML++ I P V ++ +L AC+H+
Sbjct: 473 FDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHS 529
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 8/171 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+AIV Y + ++AR+ FD MPERD VLW MI G+ R + F +++ +F +M +
Sbjct: 152 SAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLS 211
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
D T+ ++LTA A L+ LG I+ K + +D++ LI +Y C K
Sbjct: 212 FDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRIL 271
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
Q D S+ MI G + + A+ +F ++L + + + VG++
Sbjct: 272 FDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLI 322
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 9/181 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ DV T ++S Y G+ R FDQ+ + D + + AMI GY + A+TLF+E
Sbjct: 246 HSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRE 305
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ S + T+V ++ L L I+ K + AL +YC +
Sbjct: 306 LLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNE 365
Query: 123 V--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
V E +K SW MI G +G D+A+ +F +M+ + P+ V +LSA
Sbjct: 366 VQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMM-PQLSPNPVTVTSILSA 424
Query: 175 C 175
C
Sbjct: 425 C 425
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 85/179 (47%), Gaps = 9/179 (5%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM- 63
D+ S T + ++ + G V RQ F+++ + D L+ +I G+ + ++ L+ +
Sbjct: 45 DLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLR 104
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ +N+ D FT ++A + L +G + + + V +++F G+A++D+Y
Sbjct: 105 KKTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRA 164
Query: 124 EKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
E A+K D W TMI G + + + ++ +F ML + D VL+A
Sbjct: 165 ELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTA 223
>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
Length = 698
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 106/182 (58%), Gaps = 9/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+VIS+TA++ Y+ G ++ AR+ F M RD V WTAMI GY + R EA+ LF+ M
Sbjct: 258 NVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMI 317
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
T + +T+ ++L+ A+L LD G+ I ++ ++ NA+I MY
Sbjct: 318 TCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFP 377
Query: 125 KA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
A +K+ +WT+MIV LA G G++A+ +F +MLRA ++PD + YVGVLSAC
Sbjct: 378 WARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSAC 437
Query: 176 TH 177
+H
Sbjct: 438 SH 439
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 99/217 (45%), Gaps = 42/217 (19%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V SW A+VS + G++D+A F+ MP+R V W AMI GY + +AL LF
Sbjct: 119 MPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLF 178
Query: 61 QEM-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
M S++ DEFTI S+L+A ANL + +G+ + YI + ++ + NALI Y
Sbjct: 179 SRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAK 238
Query: 120 CADVEKAQ-----------------------------------------KDKFSWTTMIV 138
VE A+ +D +WT MIV
Sbjct: 239 SGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIV 298
Query: 139 GLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
G +G D+A+D+F M+ +P+ VLS C
Sbjct: 299 GYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVC 335
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 89/202 (44%), Gaps = 40/202 (19%)
Query: 16 YINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTI 75
+ G++ AR F +MPERD V WT M+ G R RF EA+ +M +FT+
Sbjct: 2 FAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTL 61
Query: 76 VSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-------- 127
++L++ A +A +G + +++ K + + + N++++MY C D E A
Sbjct: 62 TNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPV 121
Query: 128 -------------------------------KDKFSWTTMIVGLAISGNGDKALDMFSQM 156
+ SW MI G +G KAL +FS+M
Sbjct: 122 RSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRM 181
Query: 157 LR-ASIKPDEVAYVGVLSACTH 177
L +S+ PDE VLSAC +
Sbjct: 182 LHESSMAPDEFTITSVLSACAN 203
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 26/166 (15%)
Query: 11 AIVSRYINRGQVDIARQCFDQMP-ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
AI++ Y G AR+ FDQ+ ++ + WT+MI + + EA+ LF+EM + +
Sbjct: 365 AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVE 424
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
D T V +L+A ++ ++ G K Y D+ K ++ I +
Sbjct: 425 PDRITYVGVLSACSHAGFVNEG---KRYYDQIKNEHQI-------------------APE 462
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ LA +G +A + +M ++PD +A+ +LSAC
Sbjct: 463 MSHYACMVDLLARAGLFSEAQEFIRRM---PVEPDAIAWGSLLSAC 505
>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 106/186 (56%), Gaps = 14/186 (7%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV ++ Y + G +D+AR+ FD+MPER V W +MID +R + AL LF+EMQ
Sbjct: 176 DVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQ 235
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN---KVKNDIFAGNALIDMYCICA 121
S D +T+ S+L+A A L +L LG W ++ + V D+ N+LI+MYC C
Sbjct: 236 RS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG 294
Query: 122 DVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQML--RASIKPDEVAYVGV 171
+ A+ +D SW MI+G A G ++A++ F +M+ R +++P+ V +VG+
Sbjct: 295 SLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGL 354
Query: 172 LSACTH 177
L AC H
Sbjct: 355 LIACNH 360
>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g30700-like [Cucumis sativus]
Length = 788
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 101/177 (57%), Gaps = 9/177 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+ + Y +V ARQ FD+ PE+ W AMI GY + A++LFQEM +
Sbjct: 354 TALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMM-PQLS 412
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-- 127
+ T+ SIL+A A L AL +G+W+ I +++++++ AL+DMY C + +A+
Sbjct: 413 PNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQL 472
Query: 128 ------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
K+ +W MI G + G+G +AL +F +ML++ I P V ++ +L AC+H+
Sbjct: 473 FDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHS 529
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 8/171 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+AIV Y + ++AR+ FD MPERD VLW MI G+ R + F +++ +F +M +
Sbjct: 152 SAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLS 211
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
D T+ ++LTA A L+ LG I+ K + +D++ LI +Y C K
Sbjct: 212 FDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRIL 271
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
Q D S+ MI G + + A+ +F ++L + + + VG++
Sbjct: 272 FDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLI 322
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 9/181 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ DV T ++S Y G+ R FDQ+ + D + + AMI GY + A+TLF+E
Sbjct: 246 HSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRE 305
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ S + T+V ++ L L I+ K + AL +YC +
Sbjct: 306 LLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNE 365
Query: 123 V--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
V E +K SW MI G +G D+A+ +F +M+ + P+ V +LSA
Sbjct: 366 VQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMM-PQLSPNPVTVTSILSA 424
Query: 175 C 175
C
Sbjct: 425 C 425
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 85/179 (47%), Gaps = 9/179 (5%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM- 63
D+ S T + ++ + G V RQ F+++ + D L+ +I G+ + ++ L+ +
Sbjct: 45 DLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLR 104
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ +N+ D FT ++A + L +G + + + V +++F G+A++D+Y
Sbjct: 105 KXTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRA 164
Query: 124 EKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
E A+K D W TMI G + + + ++ +F ML + D VL+A
Sbjct: 165 ELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTA 223
>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 804
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 106/182 (58%), Gaps = 9/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+VIS+TA++ Y+ G ++ AR+ F M RD V WTAMI GY + R EA+ LF+ M
Sbjct: 364 NVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMI 423
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
T + +T+ ++L+ A+L LD G+ I ++ ++ NA+I MY
Sbjct: 424 TCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFP 483
Query: 125 KA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
A +K+ +WT+MIV LA G G++A+ +F +MLRA ++PD + YVGVLSAC
Sbjct: 484 WARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSAC 543
Query: 176 TH 177
+H
Sbjct: 544 SH 545
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 99/217 (45%), Gaps = 42/217 (19%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V SW A+VS + G++D+A F+ MP+R V W AMI GY + +AL LF
Sbjct: 225 MPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLF 284
Query: 61 QEM-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
M S++ DEFTI S+L+A ANL + +G+ + YI + ++ + NALI Y
Sbjct: 285 SRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAK 344
Query: 120 CADVEKAQ-----------------------------------------KDKFSWTTMIV 138
VE A+ +D +WT MIV
Sbjct: 345 SGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIV 404
Query: 139 GLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
G +G D+A+D+F M+ +P+ VLS C
Sbjct: 405 GYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVC 441
Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 99/217 (45%), Gaps = 40/217 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ ++V +W +++S + G++ AR F +MPERD V WT M+ G R RF EA+
Sbjct: 93 LARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTL 152
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M +FT+ ++L++ A +A +G + +++ K + + + N++++MY C
Sbjct: 153 LDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKC 212
Query: 121 ADVEKAQ---------------------------------------KDKFSWTTMIVGLA 141
D E A + SW MI G
Sbjct: 213 GDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYN 272
Query: 142 ISGNGDKALDMFSQMLR-ASIKPDEVAYVGVLSACTH 177
+G KAL +FS+ML +S+ PDE VLSAC +
Sbjct: 273 QNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACAN 309
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 26/166 (15%)
Query: 11 AIVSRYINRGQVDIARQCFDQMP-ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
AI++ Y G AR+ FDQ+ ++ + WT+MI + + EA+ LF+EM + +
Sbjct: 471 AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVE 530
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
D T V +L+A ++ ++ G K Y D+ K ++ I +
Sbjct: 531 PDRITYVGVLSACSHAGFVNEG---KRYYDQIKNEHQI-------------------APE 568
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ LA +G +A + +M ++PD +A+ +LSAC
Sbjct: 569 MSHYACMVDLLARAGLFSEAQEFIRRM---PVEPDAIAWGSLLSAC 611
>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
Length = 615
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 106/186 (56%), Gaps = 14/186 (7%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV ++ Y + G +D+AR+ FD+MPER V W +MID +R + AL LF+EMQ
Sbjct: 162 DVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQ 221
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN---KVKNDIFAGNALIDMYCICA 121
S D +T+ S+L+A A L +L LG W ++ + V D+ N+LI+MYC C
Sbjct: 222 RS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG 280
Query: 122 DVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQML--RASIKPDEVAYVGV 171
+ A+ +D SW MI+G A G ++A++ F +M+ R +++P+ V +VG+
Sbjct: 281 SLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGL 340
Query: 172 LSACTH 177
L AC H
Sbjct: 341 LIACNH 346
>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
Length = 695
Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 106/186 (56%), Gaps = 14/186 (7%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV ++ Y + G +D+AR+ FD+MPER V W +MID +R + AL LF+EMQ
Sbjct: 242 DVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQ 301
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN---KVKNDIFAGNALIDMYCICA 121
S D +T+ S+L+A A L +L LG W ++ + V D+ N+LI+MYC C
Sbjct: 302 RS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG 360
Query: 122 DVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQML--RASIKPDEVAYVGV 171
+ A+ +D SW MI+G A G ++A++ F +M+ R +++P+ V +VG+
Sbjct: 361 SLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGL 420
Query: 172 LSACTH 177
L AC H
Sbjct: 421 LIACNH 426
>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
Length = 648
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 63/186 (33%), Positives = 109/186 (58%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDVISWT+IV Y G + A + F + P +D V WTAM+ GY + +AL +F
Sbjct: 203 MVEKDVISWTSIVVAYTRSGDMRSAEEVFGRCPVKDMVAWTAMVTGYAQNAMPVKALEVF 262
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M ++ DE ++ ++A A L AL W++ ++ N++ G+ L+DMY C
Sbjct: 263 DRMAELGMVIDEVSLTGAISACAQLGALRRAAWVQEIAERTGFGNNVVVGSGLVDMYAKC 322
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGV 171
+++A +K+ +++++MI GLA G +A+ +F +M+ RA+++P+ V ++GV
Sbjct: 323 GLIDEASKVFYGMQEKNVYTYSSMIAGLASHGRASEAIALFKEMVNRANVEPNHVTFIGV 382
Query: 172 LSACTH 177
L+AC+H
Sbjct: 383 LTACSH 388
Score = 40.0 bits (92), Expect = 0.42, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 39/109 (35%)
Query: 108 FAGNALIDMYCICADV--------EKAQKDKFSWTTMIVGLAISGNGD------------ 147
F N+LI Y C DV E +KD SWT+++V SG+
Sbjct: 178 FVENSLIGAYVACGDVGAARKVFDEMVEKDVISWTSIVVAYTRSGDMRSAEEVFGRCPVK 237
Query: 148 -------------------KALDMFSQMLRASIKPDEVAYVGVLSACTH 177
KAL++F +M + DEV+ G +SAC
Sbjct: 238 DMVAWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQ 286
>gi|255562657|ref|XP_002522334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538412|gb|EEF40018.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 507
Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 99/183 (54%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ D + W+A+ Y G ++ AR FD+M RD V WTAMID Y R E LF E
Sbjct: 245 DSDEVVWSALSDMYGKCGSIEEARHIFDKMVNRDVVTWTAMIDRYFEDGRREEGFELFAE 304
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ S I ++FT +L A A+L +G+ + ++ + FA +AL+ MY C +
Sbjct: 305 LLRSGIKPNDFTFAGVLNACADLGVEGIGKQVHGHMTRADFDPFSFAASALVHMYSKCGN 364
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+ A Q D SWT++I G A +G+ D+AL F +L++ +PD + +VGVLSA
Sbjct: 365 MVNAERVFRGMPQPDLVSWTSLIAGYAQNGHPDEALQYFELLLKSGTRPDHITFVGVLSA 424
Query: 175 CTH 177
C H
Sbjct: 425 CAH 427
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 107/185 (57%), Gaps = 9/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D+ SW ++S G + AR+ FD MPERD WTAMI GY+R NR EAL L+
Sbjct: 141 MGERDLCSWNVLISGCAKMGLLKEARKLFDTMPERDNFSWTAMISGYVRHNRPHEALELY 200
Query: 61 QEM-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+ M + N+ ++FT+ S+L A A + L +G+ I YI + + +D +AL DMY
Sbjct: 201 RLMKKCENLTSNKFTVSSVLAAAAAIPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGK 260
Query: 120 CADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C +E+A+ +D +WT MI G ++ ++F+++LR+ IKP++ + GV
Sbjct: 261 CGSIEEARHIFDKMVNRDVVTWTAMIDRYFEDGRREEGFELFAELLRSGIKPNDFTFAGV 320
Query: 172 LSACT 176
L+AC
Sbjct: 321 LNACA 325
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+A+V Y G + A + F MP+ D V WT++I GY + EAL F+ + S
Sbjct: 353 SALVHMYSKCGNMVNAERVFRGMPQPDLVSWTSLIAGYAQNGHPDEALQYFELLLKSGTR 412
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDK 100
D T V +L+A A+ +D G ++ + +DK
Sbjct: 413 PDHITFVGVLSACAHAGLVDKGLQYFHSIMDK 444
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 17/132 (12%)
Query: 42 AMIDGYLRVNRFREALTLFQE-------MQTSNIMGDEFTIV--SILTARANLRALDLGE 92
+ ID RF+EA+ L E +Q N + + S++ + RAL++G+
Sbjct: 41 SFIDRLCNEGRFKEAIALLCEQNRLKEAIQVLNQIDRPSPSIYSSLIQSCLKNRALEVGK 100
Query: 93 WIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTMIVGLAISG 144
+ +I + + N L+DMY C D+ AQK D SW +I G A G
Sbjct: 101 KVHDHIKLSGFIPGLVISNRLLDMYAKCNDLVDAQKLFEEMGERDLCSWNVLISGCAKMG 160
Query: 145 NGDKALDMFSQM 156
+A +F M
Sbjct: 161 LLKEARKLFDTM 172
>gi|255540011|ref|XP_002511070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550185|gb|EEF51672.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 551
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 67/183 (36%), Positives = 105/183 (57%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++DV+S+ A+V ++ G+ AR+ FD MP RD V W ++I GY + + EA+ LF
Sbjct: 200 DRDVVSYNALVDGFVKAGEFVKAREIFDLMPMRDSVSWGSLIAGYAQGSYCNEAIGLFDL 259
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M + D +VS L+A A L L+ G+ I YI KN+++ D F L+D Y
Sbjct: 260 MMGLKLEPDNIALVSALSACAQLGELEKGKQIHDYIKKNRIQADSFLSTGLVDFYAKSGC 319
Query: 123 VEKAQK------DK--FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
++ A K DK +W M++G+A+ GN L+ FS+M+ A IKPD ++++GVL
Sbjct: 320 IDTAIKVFELSPDKSLITWNAMLIGIAMHGNSHLLLNYFSRMMEAGIKPDGISFLGVLVG 379
Query: 175 CTH 177
C+H
Sbjct: 380 CSH 382
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 37/161 (22%), Positives = 64/161 (39%), Gaps = 39/161 (24%)
Query: 56 ALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK--------------- 100
AL F +M+ ++ D + L A A+LR L L + + + + K
Sbjct: 121 ALHFFLQMRRFSVPPDFHSYPFALKACAHLRVLSLAQCLHSQVFKFGFVSDLYVINSLIH 180
Query: 101 ----------------NKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTM 136
D+ + NAL+D + + KA+ +D SW ++
Sbjct: 181 VYSLFDCLNYACQVFDESSDRDVVSYNALVDGFVKAGEFVKAREIFDLMPMRDSVSWGSL 240
Query: 137 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
I G A ++A+ +F M+ ++PD +A V LSAC
Sbjct: 241 IAGYAQGSYCNEAIGLFDLMMGLKLEPDNIALVSALSACAQ 281
>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
Length = 804
Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 106/182 (58%), Gaps = 9/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+VIS+TA++ Y+ G ++ AR+ F M RD V WTAMI GY + R EA+ LF+ M
Sbjct: 364 NVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMI 423
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
T + +T+ ++L+ A+L LD G+ I ++ ++ NA+I MY
Sbjct: 424 TCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFP 483
Query: 125 KA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
A +K+ +WT+MIV LA G G++A+ +F +MLRA ++PD + YVGVLSAC
Sbjct: 484 WARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSAC 543
Query: 176 TH 177
+H
Sbjct: 544 SH 545
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 98/217 (45%), Gaps = 42/217 (19%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V SW A+VS + G++D+A F+ MP R V W AMI GY + +AL LF
Sbjct: 225 MPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLF 284
Query: 61 QEM-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
M S++ DEFTI S+L+A ANL + +G+ + YI + ++ + NALI Y
Sbjct: 285 SRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAK 344
Query: 120 CADVEKAQ-----------------------------------------KDKFSWTTMIV 138
VE A+ +D +WT MIV
Sbjct: 345 SGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIV 404
Query: 139 GLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
G +G D+A+D+F M+ +P+ VLS C
Sbjct: 405 GYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVC 441
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 99/217 (45%), Gaps = 40/217 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ ++V +W +++S + G++ AR F +MPERD V WT M+ G R RF EA+
Sbjct: 93 LARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTL 152
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M +FT+ ++L++ A +A +G + +++ K + + + N++++MY C
Sbjct: 153 LDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKC 212
Query: 121 ADVEKAQ---------------------------------------KDKFSWTTMIVGLA 141
D E A + SW MI G
Sbjct: 213 GDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYN 272
Query: 142 ISGNGDKALDMFSQMLR-ASIKPDEVAYVGVLSACTH 177
+G KAL +FS+ML +S+ PDE VLSAC +
Sbjct: 273 QNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACAN 309
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 26/166 (15%)
Query: 11 AIVSRYINRGQVDIARQCFDQMP-ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
AI++ Y G AR+ FDQ+ ++ + WT+MI + + EA+ LF+EM + +
Sbjct: 471 AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVE 530
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
D T V +L+A ++ ++ G K Y D+ K ++ I +
Sbjct: 531 PDRITYVGVLSACSHAGFVNEG---KRYYDQIKNEHQI-------------------APE 568
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ LA +G +A + +M ++PD +A+ +LSAC
Sbjct: 569 MSHYACMVDLLARAGLFSEAQEFIRRM---PVEPDAIAWGSLLSAC 611
>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g23330
gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 715
Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 111/183 (60%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ DV +++V Y +++ + + F ++ RD + W +++ GY++ R+ EAL LF++
Sbjct: 274 DSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQ 333
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M T+ + S++ A A+L L LG+ + Y+ + ++IF +AL+DMY C +
Sbjct: 334 MVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGN 393
Query: 123 VEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
++ A+K D+ SWT +I+G A+ G+G +A+ +F +M R +KP++VA+V VL+A
Sbjct: 394 IKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTA 453
Query: 175 CTH 177
C+H
Sbjct: 454 CSH 456
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 93/164 (56%), Gaps = 8/164 (4%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81
+D R+ F+ MP +D V + +I GY + + +AL + +EM T+++ D FT+ S+L
Sbjct: 192 IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPI 251
Query: 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSW 133
+ + G+ I Y+ + + +D++ G++L+DMY A +E ++ +D SW
Sbjct: 252 FSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISW 311
Query: 134 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+++ G +G ++AL +F QM+ A +KP VA+ V+ AC H
Sbjct: 312 NSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAH 355
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 25/167 (14%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+A+V Y G + AR+ FD+M D V WTA+I G+ EA++LF+EM+ +
Sbjct: 382 SALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVK 441
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
++ V++LTA +++ +D W Y + ++ N ++ Y AD+
Sbjct: 442 PNQVAFVAVLTACSHVGLVDEA-W--GYFNS---MTKVYGLNQELEHYAAVADL------ 489
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
L +G ++A + S+M ++P + +LS+C+
Sbjct: 490 ----------LGRAGKLEEAYNFISKMC---VEPTGSVWSTLLSSCS 523
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 80/209 (38%), Gaps = 44/209 (21%)
Query: 8 SWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN 67
S + ++S Y N + A F + + W ++I + + F +AL F EM+ S
Sbjct: 41 SASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASG 100
Query: 68 IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY---------- 117
D S+L + + L GE + +I + + D++ GNAL++MY
Sbjct: 101 RCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKI 160
Query: 118 -------------------------CICA----DVEK-----AQKDKFSWTTMIVGLAIS 143
CI V + +KD S+ T+I G A S
Sbjct: 161 SVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQS 220
Query: 144 GNGDKALDMFSQMLRASIKPDEVAYVGVL 172
G + AL M +M +KPD VL
Sbjct: 221 GMYEDALRMVREMGTTDLKPDSFTLSSVL 249
>gi|297844244|ref|XP_002890003.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297335845|gb|EFH66262.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 471
Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 104/189 (55%), Gaps = 14/189 (7%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW ++ Y N G ++ + FD+M ER+ W +I GY + R E L F
Sbjct: 113 MPCRDVMSWNTVLEGYANIGDMEACERVFDEMLERNVFSWNGLIKGYAQNGRVSEVLGSF 172
Query: 61 QEM-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTY---IDKNKVKNDIFAGNALIDM 116
+ M ++ ++ T+ +L+A A L A D G+ + Y + NKV D+ NALIDM
Sbjct: 173 KRMVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHKYGENLGYNKV--DVNVKNALIDM 230
Query: 117 YCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
Y C +E A ++D SW TMI GLA G+G +ALD+F +M I PD+V +
Sbjct: 231 YGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALDLFHEMKNCGISPDKVTF 290
Query: 169 VGVLSACTH 177
VGVL AC H
Sbjct: 291 VGVLCACKH 299
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 32/177 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+ WT++++ Y+ + AR+ FD PERD VLW M+ GY+ + EA +LF
Sbjct: 51 MVEKNVVIWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMVAGYIEMGNMMEARSLF 110
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M ++M + ++L AN+ D+ A + D
Sbjct: 111 DQMPCRDVM----SWNTVLEGYANI-------------------GDMEACERVFD----- 142
Query: 121 ADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGVLSACT 176
E +++ FSW +I G A +G + L F +M+ S+ P++ VLSAC
Sbjct: 143 ---EMLERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVFPNDATLTLVLSACA 196
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV A++ Y G ++IA + F + RD + W MI+G EAL LF EM+
Sbjct: 220 DVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALDLFHEMK 279
Query: 65 TSNIMGDEFTIVSILTARANLRALDLG 91
I D+ T V +L A ++ ++ G
Sbjct: 280 NCGISPDKVTFVGVLCACKHMGLVEDG 306
>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 596
Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 106/182 (58%), Gaps = 8/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV +++V Y D A++ FD+MP R+ V WTA+I GY++ F + + +F+EM
Sbjct: 239 DVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEML 298
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
S++ +E T+ S+L+A A++ AL G + Y+ KN ++ + AG LID+Y C +E
Sbjct: 299 KSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLE 358
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+A +K+ ++WT MI G A G A D+F ML + + P+EV ++ VLSAC
Sbjct: 359 EAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACA 418
Query: 177 HN 178
H
Sbjct: 419 HG 420
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 101/184 (54%), Gaps = 9/184 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ D +++S Y + G D A + FD ++D V WTAMIDG++R EA+ F E
Sbjct: 135 DSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVE 194
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIK-TYIDKNKVKNDIFAGNALIDMYCICA 121
M+ + + +E T+VS+L A + + G + Y++ +VK D+F G++L+DMY C+
Sbjct: 195 MKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCS 254
Query: 122 DVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+ AQK + +WT +I G S DK + +F +ML++ + P+E VLS
Sbjct: 255 CYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLS 314
Query: 174 ACTH 177
AC H
Sbjct: 315 ACAH 318
>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g02750-like [Cucumis sativus]
Length = 741
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 103/182 (56%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD++SW +++ Y GQ+D A + F++M ER+ V W ++I GY++ + EAL F M
Sbjct: 386 KDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILM 445
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ D+ TIV L A ANL AL++G + K ND+F NA++ MY V
Sbjct: 446 KQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRV 505
Query: 124 EKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+A+ KD SW ++I G A++G G +A+++F M I PDEV + G+LSAC
Sbjct: 506 PEAENVFAEIKXKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSAC 565
Query: 176 TH 177
H
Sbjct: 566 NH 567
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 80/164 (48%), Gaps = 16/164 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+++SW A++ Y+ Q+D A + F +MPE+D V WTAMI+GY+RV + +A +
Sbjct: 259 MPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREIL 318
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M NI I L + A ++ I D N++I Y C
Sbjct: 319 NLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISV--------RDSVCWNSMITGYAHC 370
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQM 156
++A KD SW TMI A +G DKAL+MF++M
Sbjct: 371 GRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEM 414
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 12/177 (6%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
K+V+SW +I+S Y G++ + Q F+ M ER+ V W M+DGY+ V A F+++
Sbjct: 169 KNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKI 228
Query: 64 QTSNIMGDEFTIVSILTARANL-RALDLGEWIKTYIDKNKVKNDIFAG-----NALIDMY 117
T N++ + V++L+ A+ R + KN V + G N + D Y
Sbjct: 229 PTPNVV----SWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAY 284
Query: 118 CICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+ +E +KD SWT MI G G +A ++ + M +I G L +
Sbjct: 285 KLF--MEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIAAQTAMINGYLQS 339
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 15/164 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++++ +++S Y G++ AR+ FD MP+R+ V W +MI GYL +A LF
Sbjct: 41 MTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLF 100
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M +I ++ ++T + L+ + + K D NALI Y
Sbjct: 101 DRMFKRDI----YSWTLMITCYTRIGELEKARELFNLLPD---KQDTVCRNALIAGYAKK 153
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQM 156
+A+ K+ SW +++ G +G L F M
Sbjct: 154 RLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAM 197
Score = 39.3 bits (90), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 31/161 (19%), Positives = 62/161 (38%), Gaps = 47/161 (29%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+D + A+++ Y + A++ FD+M ++ V W +++ GY + + + L F+ M
Sbjct: 138 QDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAM 197
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
N++ W N ++D Y D+
Sbjct: 198 GERNVVS----------------------W-----------------NLMVDGYVGVGDL 218
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
+ A + SW TM+ G A G +A ++F++M
Sbjct: 219 DSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEM 259
>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 741
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 103/182 (56%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD++SW +++ Y GQ+D A + F++M ER+ V W ++I GY++ + EAL F M
Sbjct: 386 KDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILM 445
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ D+ TIV L A ANL AL++G + K ND+F NA++ MY V
Sbjct: 446 KQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRV 505
Query: 124 EKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+A+ KD SW ++I G A++G G +A+++F M I PDEV + G+LSAC
Sbjct: 506 PEAENVFAEIKNKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSAC 565
Query: 176 TH 177
H
Sbjct: 566 NH 567
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 80/164 (48%), Gaps = 16/164 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+++SW A++ Y+ Q+D A + F +MPE+D V WTAMI+GY+RV + +A +
Sbjct: 259 MPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREIL 318
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M NI I L + A ++ I D N++I Y C
Sbjct: 319 NLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISV--------RDSVCWNSMITGYAHC 370
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQM 156
++A KD SW TMI A +G DKAL+MF++M
Sbjct: 371 GRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEM 414
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 12/177 (6%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
K+V+SW +I+S Y G++ + Q F+ M ER+ V W M+DGY+ V A F+++
Sbjct: 169 KNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKI 228
Query: 64 QTSNIMGDEFTIVSILTARANL-RALDLGEWIKTYIDKNKVKNDIFAG-----NALIDMY 117
T N++ + V++L+ A+ R + KN V + G N + D Y
Sbjct: 229 PTPNVV----SWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAY 284
Query: 118 CICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+ +E +KD SWT MI G G +A ++ + M +I G L +
Sbjct: 285 KLF--MEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIAAQTAMINGYLQS 339
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 15/164 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++++ +++S Y G++ AR+ FD MP+R+ V W +MI GYL +A LF
Sbjct: 41 MTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLF 100
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M +I ++ ++T + L+ + + K D NALI Y
Sbjct: 101 DRMFKRDI----YSWTLMITCYTRIGELEKARELFNLLPD---KQDTVCRNALIAGYAKK 153
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQM 156
+A+ K+ SW +++ G +G L F M
Sbjct: 154 RLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAM 197
Score = 39.3 bits (90), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 31/161 (19%), Positives = 62/161 (38%), Gaps = 47/161 (29%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+D + A+++ Y + A++ FD+M ++ V W +++ GY + + + L F+ M
Sbjct: 138 QDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAM 197
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
N++ W N ++D Y D+
Sbjct: 198 GERNVVS----------------------W-----------------NLMVDGYVGVGDL 218
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
+ A + SW TM+ G A G +A ++F++M
Sbjct: 219 DSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEM 259
Score = 35.8 bits (81), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPER----DYVLWTAMIDGYLRVNRFREA 56
+KNKDV+SW ++++ Y G A + F+ MP R D V +T ++ +
Sbjct: 515 IKNKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQG 574
Query: 57 LTLFQEM 63
L LF+ M
Sbjct: 575 LNLFKSM 581
>gi|255553249|ref|XP_002517667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543299|gb|EEF44831.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 628
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 104/191 (54%), Gaps = 14/191 (7%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+S T++VS Y V AR F +M ER+ V W A+I GY + EAL LF
Sbjct: 314 MPIRNVVSETSMVSGYAKTASVKAARLLFTKMIERNVVSWNALIAGYTQNGENEEALRLF 373
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVK------NDIFAGNALI 114
+ ++ I +T ++L A ANL L LG ++ K+ + +D+F GNALI
Sbjct: 374 RMLKREAICPTHYTFGNLLNACANLADLQLGRQAHAHVLKHGFRFQYGEESDVFVGNALI 433
Query: 115 DMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 166
DMY C VE+ ++D SW MIVG A +G G +AL +F +ML + KPD V
Sbjct: 434 DMYMKCGSVEEGCRIFENMVERDYVSWNAMIVGYAQNGYGMEALGLFRKMLASGEKPDHV 493
Query: 167 AYVGVLSACTH 177
+G L AC+H
Sbjct: 494 TMIGALCACSH 504
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 101/184 (54%), Gaps = 8/184 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V SW AIVS + G +D + F MPE D W ++I G+ + +RF EAL F
Sbjct: 80 MPEKNVFSWNAIVSTLVKSGFLDEGARLFVSMPEPDQCSWNSLIAGFAQHDRFEEALNYF 139
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M + +E+T S L+A A L+ L +G I + K++ D++ G+ALID+Y C
Sbjct: 140 VKMHRKGFVLNEYTFGSGLSACAGLKDLKIGTQIHGLMLKSQFLLDVYMGSALIDIYSKC 199
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
V+ AQ ++ SW ++I +G +AL++F +M+ + +PDEV V+
Sbjct: 200 GFVDCAQRVFDGMMERNVVSWNSLITCYEQNGPSREALEIFMRMMESGFEPDEVTLASVV 259
Query: 173 SACT 176
SAC
Sbjct: 260 SACA 263
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 96/212 (45%), Gaps = 40/212 (18%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV +A++ Y G VD A++ FD M ER+ V W ++I Y + REAL +F M
Sbjct: 185 DVYMGSALIDIYSKCGFVDCAQRVFDGMMERNVVSWNSLITCYEQNGPSREALEIFMRMM 244
Query: 65 TSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
S DE T+ S+++A A+L A G E + ++K+++D+ NAL+DMY C +
Sbjct: 245 ESGFEPDEVTLASVVSACASLAAAKQGLEIHACVVKRDKLRDDLILSNALVDMYAKCGRI 304
Query: 124 EKA---------------------------------------QKDKFSWTTMIVGLAISG 144
+A +++ SW +I G +G
Sbjct: 305 NEARCVFDRMPIRNVVSETSMVSGYAKTASVKAARLLFTKMIERNVVSWNALIAGYTQNG 364
Query: 145 NGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
++AL +F + R +I P + +L+AC
Sbjct: 365 ENEEALRLFRMLKREAICPTHYTFGNLLNACA 396
>gi|345505228|gb|AEN99838.1| chlororespiratory reduction 4, partial [Matthiola incana]
Length = 584
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 107/187 (57%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV++W ++ Y G V A++ FD+MP+RD V + +M+ GY++ EA+ +F
Sbjct: 250 MPRKDVVTWATMIDGYAKLGFVHQAKKLFDEMPQRDVVAYNSMMAGYVQNKYHAEAIGIF 309
Query: 61 QEMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+M+ S++ DE T+V +L+A A L L I YI NK + G ALID Y
Sbjct: 310 NDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLGGKLGVALIDTYSK 369
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C ++K+ K W MI GLAI G G+ A DM Q+ + SIKPD++ ++GV
Sbjct: 370 CGSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIEKRSIKPDDITFIGV 429
Query: 172 LSACTHN 178
L+AC+H+
Sbjct: 430 LNACSHS 436
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 33/175 (18%)
Query: 2 KNKDVISWTAIVSRYI-NRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ K++ISW ++S Y + V++A + FD+MPE+D + W ++IDGY++ R +A +LF
Sbjct: 188 EKKNLISWNCMISGYTQSEDGVNVASKLFDEMPEKDLISWNSLIDGYVKHRRIEDAKSLF 247
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M +++ W T ID + L D
Sbjct: 248 DLMPRKDVV----------------------TW-ATMIDGYAKLGFVHQAKKLFD----- 279
Query: 121 ADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSA 174
E Q+D ++ +M+ G + +A+ +F+ M + S + PDE V VLSA
Sbjct: 280 ---EMPQRDVVAYNSMMAGYVQNKYHAEAIGIFNDMEKESHLSPDETTLVIVLSA 331
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 17/182 (9%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ ++ Y+ G + ARQ FD+MP+RD V + +MIDGY++ A LF M
Sbjct: 127 DLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMP 186
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
++ ++S + + G + + + + D+ + N+LID Y +E
Sbjct: 187 R-----EKKNLISWNCMISGYTQSEDGVNVASKLFDEMPEKDLISWNSLIDGYVKHRRIE 241
Query: 125 KAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A+ KD +W TMI G A G +A +F +M + D VAY +++
Sbjct: 242 DAKSLFDLMPRKDVVTWATMIDGYAKLGFVHQAKKLFDEMPQR----DVVAYNSMMAGYV 297
Query: 177 HN 178
N
Sbjct: 298 QN 299
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 6 VISWTAIVSRYINRGQVDIARQCFDQMP------ERDYVLWTAMIDGYLRVNRFREALTL 59
V+S++A Y+ + AR F + E D LW A+I + R AL L
Sbjct: 25 VLSFSASRRSYL----AEFARCIFHEYHVSSYSVEEDPFLWNAVIKSFSHGVDPRNALLL 80
Query: 60 FQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY-- 117
F M +++ D+F+I +L A + L +D G + ++ K + +D+F N LI +Y
Sbjct: 81 FCLMIENSVSVDKFSISLVLKACSRLGFVDFGMQVHGFLRKTGIYSDLFLQNCLIGLYLK 140
Query: 118 CICADVEK------AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158
C C + Q+D S+ +MI G G + A ++F M R
Sbjct: 141 CGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMPR 187
>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
Length = 604
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 105/183 (57%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N ++ +++ Y ++ AR FD+M + V + A+I GY R ++ EAL+LF+E
Sbjct: 162 NHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRE 221
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+Q SNI + T++S++ + A L ALDLG+WI Y+ K + ALIDM+ C
Sbjct: 222 LQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGS 281
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+ A +D +W+ MIV A G+G KA+ MF +M R ++PDE+ ++G+L A
Sbjct: 282 LTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYA 341
Query: 175 CTH 177
C+H
Sbjct: 342 CSH 344
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 86/162 (53%), Gaps = 8/162 (4%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81
+D A FDQ+ ++D +L+ M GY R N A +LF E+ S ++ D++T S+L A
Sbjct: 80 MDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKA 139
Query: 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSW 133
A+ +AL G + + K + ++I+ LI+MY C D+ A Q S+
Sbjct: 140 CASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY 199
Query: 134 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+I G A S ++AL +F ++ ++I+P +V + V+ +C
Sbjct: 200 NAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSC 241
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 64/150 (42%), Gaps = 10/150 (6%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ + G + A F+ M RD W+AMI + +A+++F+EM+ +
Sbjct: 270 TALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVR 329
Query: 70 GDEFTIVSILTARANLRALDLGEWI-----KTYIDKNKVKN-----DIFAGNALIDMYCI 119
DE T + +L A ++ ++ G KTY +K+ D+ +D
Sbjct: 330 PDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYN 389
Query: 120 CADVEKAQKDKFSWTTMIVGLAISGNGDKA 149
D + + W T++ + GN + A
Sbjct: 390 FVDKLEIKATPILWRTLLSACSTHGNVEMA 419
>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
Length = 596
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 106/182 (58%), Gaps = 8/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV +++V Y D A++ FD+MP R+ V WTA+I GY++ F + + +F+EM
Sbjct: 239 DVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEML 298
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
S++ +E T+ S+L+A A++ AL G + Y+ KN ++ + AG LID+Y C +E
Sbjct: 299 KSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLE 358
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+A +K+ ++WT MI G A G A D+F ML + + P+EV ++ VLSAC
Sbjct: 359 EAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACA 418
Query: 177 HN 178
H
Sbjct: 419 HG 420
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 101/184 (54%), Gaps = 9/184 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ D +++S Y + G D A + FD ++D V WTAMIDG++R EA+ F E
Sbjct: 135 DSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVE 194
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIK-TYIDKNKVKNDIFAGNALIDMYCICA 121
M+ + + +E T+VS+L A + + G + Y++ +VK D+F G++L+DMY C+
Sbjct: 195 MKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCS 254
Query: 122 DVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+ AQK + +WT +I G S DK + +F +ML++ + P+E VLS
Sbjct: 255 CYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLS 314
Query: 174 ACTH 177
AC H
Sbjct: 315 ACAH 318
>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Vitis vinifera]
Length = 635
Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats.
Identities = 69/186 (37%), Positives = 101/186 (54%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW +V Y G++DIAR FD+MPERD + AM+ GY++ EAL F
Sbjct: 279 MPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGHLMEALNFF 338
Query: 61 QEMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+M + + D T++ L+A A L D G + YI+ N G ALIDMY
Sbjct: 339 HDMLSRKELFPDNATLLITLSAIAQLGHFDEGVALHCYIEDNGFSLSEKLGVALIDMYAK 398
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C ++ A K W +I GLAI G G+ A ++F +M + +KPD++ ++GV
Sbjct: 399 CGSIDNALSVFEDIDDKSIDHWNAIIGGLAIHGLGEVAFELFMEMEKLFVKPDDITFIGV 458
Query: 172 LSACTH 177
L+AC H
Sbjct: 459 LNACNH 464
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 19/163 (11%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ--E 62
DV ++ Y+ G + IARQ FD+M +RD V + +MIDGY++ + A LF
Sbjct: 156 DVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVKHGMVKSARELFDVMP 215
Query: 63 MQTSNIMGDEFTIVSILTARANLR-ALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
M+ N++ I + LR A +L E + K D+ + N++ID C
Sbjct: 216 MEQKNLISWNSMISGYARSEEGLRVAWELFEEMP--------KRDLISWNSMIDGCVKCG 267
Query: 122 DVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
+E A ++D SW M+ G A G D A +F +M
Sbjct: 268 KMENAHHLFNQMPKRDVVSWANMVDGYAKLGEIDIARGLFDEM 310
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 20/186 (10%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMP--ERDYVLWTAMIDGYLRVNR-FREAL 57
M +D +S+ +++ Y+ G V AR+ FD MP +++ + W +MI GY R R A
Sbjct: 183 MMKRDSVSFNSMIDGYVKHGMVKSARELFDVMPMEQKNLISWNSMISGYARSEEGLRVAW 242
Query: 58 TLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
LF+EM +++ I + A L + K D+ + ++D Y
Sbjct: 243 ELFEEMPKRDLISWNSMIDGCVKCGKMENAHHLFNQMP--------KRDVVSWANMVDGY 294
Query: 118 CICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAY 168
+++ A ++D S M+ G +G+ +AL+ F ML R + PD
Sbjct: 295 AKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGHLMEALNFFHDMLSRKELFPDNATL 354
Query: 169 VGVLSA 174
+ LSA
Sbjct: 355 LITLSA 360
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYI 98
LW A+I + REA +F M + + D+F+ +L A + L + G I +
Sbjct: 89 LWNAIIKSFSHGEDPREAFVIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQIHGLL 148
Query: 99 DKNKVKNDIFAGNALIDMY--CICADVEKA------QKDKFSWTTMIVGLAISGNGDKAL 150
+ ++ +D+F N L+ +Y C C + + ++D S+ +MI G G A
Sbjct: 149 GRMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVKHGMVKSAR 208
Query: 151 DMFSQM 156
++F M
Sbjct: 209 ELFDVM 214
>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 980
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 101/185 (54%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ SW +++ Y G + AR+ FD MP+RD V W A+I GY + + EAL +F
Sbjct: 323 MPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMF 382
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
E++ + T L+ A++ AL+LG+ I K F GNAL+ MY C
Sbjct: 383 VEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKC 442
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+++A +KD SW TM+ G A G G +AL +F M A +KPDE+ VGVL
Sbjct: 443 GSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVL 502
Query: 173 SACTH 177
SAC+H
Sbjct: 503 SACSH 507
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 87/183 (47%), Gaps = 16/183 (8%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D ISW ++S Y G + AR+ FD+ P RD WTAM+ GY++ EA T F
Sbjct: 230 MPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFF 289
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM N E + +++ + +D+ + + +N I + N +I Y
Sbjct: 290 DEMPEKN----EVSYNAMIAGYVQTKKMDIA---RELFESMPCRN-ISSWNTMITGYGQI 341
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
D+ +A Q+D SW +I G A SG+ ++AL+MF ++ + + + L
Sbjct: 342 GDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCAL 401
Query: 173 SAC 175
S C
Sbjct: 402 STC 404
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 20/182 (10%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+SW +++S Y G VD AR+ FD MPE++ + W ++ Y+ R EA LF
Sbjct: 137 MPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLF 196
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ +++ + ++ + L W+ DK V+ D + N +I Y
Sbjct: 197 ESKSDWDLI----SWNCLMGGFVRKKKLGDARWL---FDKMPVR-DAISWNTMISGYAQG 248
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ +A+ +D F+WT M+ G +G D+A F +M + +EV+Y ++
Sbjct: 249 GGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM----PEKNEVSYNAMI 304
Query: 173 SA 174
+
Sbjct: 305 AG 306
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 13/159 (8%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+++ Y G +D A F+ + E+D V W M+ GY R R+ALT+F+ M+T+ +
Sbjct: 434 ALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKP 493
Query: 71 DEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
DE T+V +L+A ++ LD G E+ + V +ID+ +E+A
Sbjct: 494 DEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDL 553
Query: 127 ------QKDKFSWTTMIVGLAISGN---GDKALDMFSQM 156
Q SW ++ I GN G+KA +M +M
Sbjct: 554 IRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKM 592
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 51/186 (27%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+K+ D++ W +S ++ G D A F+ MP R V + AMI GYLR ++F A LF
Sbjct: 44 VKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLF 103
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY--- 117
+M + D+F+ N ++ Y
Sbjct: 104 DQMP---------------------------------------ERDLFSWNVMLTGYVRN 124
Query: 118 CICADVEK-----AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
C D + +KD SW +++ G A +G D+A ++F M + + +++ G+L
Sbjct: 125 CRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNM----PEKNSISWNGLL 180
Query: 173 SACTHN 178
+A HN
Sbjct: 181 AAYVHN 186
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 10/145 (6%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + +S+ A++S Y+ + ++AR FDQMPERD W M+ GY+R R +A LF
Sbjct: 75 MPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLF 134
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVK-NDIFAG---NALID 115
M +++ + S+L+ A +D E +KN + N + A N I+
Sbjct: 135 DLMPEKDVV----SWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIE 190
Query: 116 MYCICADVEKAQKDKFSWTTMIVGL 140
C+ + K+ D SW ++ G
Sbjct: 191 EACLLFE-SKSDWDLISWNCLMGGF 214
>gi|255560231|ref|XP_002521133.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539702|gb|EEF41284.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 274
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 98/172 (56%), Gaps = 9/172 (5%)
Query: 6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT 65
V+ W ++ Y+ G + ++R FD MP R V W MI GY + F+EA+ LF +MQ
Sbjct: 93 VVLWNVMIDGYVRLGDLAVSRDLFDNMPYRTVVSWNVMISGYAQNGYFKEAIELFHDMQM 152
Query: 66 SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK 125
++ + T+VS+L A + L AL+LG+W+ Y +KN ++ + G+ALIDMY C +EK
Sbjct: 153 DDMSPNYVTLVSVLPAISRLGALELGKWVHLYAEKNNIEVNDVLGSALIDMYSKCGSIEK 212
Query: 126 AQK---------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
A + + +W+ +I GLA+ G ALD + +M A + P +V Y
Sbjct: 213 ATQVFESIHNKMNVVTWSAIIGGLAMHGRAKDALDYYRRMQEAGVTPSDVVY 264
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127
+ FT S+L A A L G+ + Y+ K ++ ND F + L+ MY +C +E A+
Sbjct: 10 NRFTFPSVLKACAKTARLQEGKQVHGYVIKLRLDNDEFVASNLVRMYVMCGVMEDAR 66
>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 697
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 107/191 (56%), Gaps = 14/191 (7%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++VI+ T++VS Y AR F +M ER+ V W A+I GY + EAL+LF
Sbjct: 315 MPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLF 374
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVK------NDIFAGNALI 114
++ ++ +T +IL A A+L L LG ++ K+ K +DIF GN+LI
Sbjct: 375 CLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLI 434
Query: 115 DMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 166
DMY C VE+ ++D SW MI+G A +G G++AL++F +ML + KPD +
Sbjct: 435 DMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHI 494
Query: 167 AYVGVLSACTH 177
+GVLSAC H
Sbjct: 495 TMIGVLSACGH 505
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 98/184 (53%), Gaps = 8/184 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V +W ++V+ G +D A F MPERD W +M+ G+ + +R EAL F
Sbjct: 81 MPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYF 140
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M + +E+T S L+A + L ++ G I + I K+ +D++ G+AL+DMY C
Sbjct: 141 AMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKC 200
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+V AQ ++ SW ++I +G +AL +F ML + ++PDEV V+
Sbjct: 201 GNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVI 260
Query: 173 SACT 176
SAC
Sbjct: 261 SACA 264
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 40/212 (18%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV +A+V Y G V+ A+Q FD+M +R+ V W ++I Y + EAL +FQ M
Sbjct: 186 DVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVML 245
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK-NKVKNDIFAGNALIDMYCICADV 123
S + DE T+ S+++A A+L A+ +G+ + + K +K++NDI NA +DMY C+ +
Sbjct: 246 ESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRI 305
Query: 124 EK---------------------------------------AQKDKFSWTTMIVGLAISG 144
++ A+++ SW +I G +G
Sbjct: 306 KEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNG 365
Query: 145 NGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
++AL +F + R S+ P + +L AC
Sbjct: 366 ENEEALSLFCLLKRESVCPTHYTFANILKACA 397
Score = 38.9 bits (89), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSW 133
+ L A+D+ + + K+ N++F N LID Y C +E Q++ F+W
Sbjct: 31 KLKLSAIDV-RCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTW 89
Query: 134 TTMIVGLAISGNGDKALDMFSQM 156
+++ GL G D+A +F M
Sbjct: 90 NSVVTGLTKLGFLDEADSLFRSM 112
>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 605
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 105/181 (58%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+V +++ Y VD AR FD++ E V + AMI GY R NR EAL+LF+EMQ
Sbjct: 165 NVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQ 224
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
N+ +E T++S+L++ A L +LDLG+WI Y K+ + ALIDM+ C ++
Sbjct: 225 GKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLD 284
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A KD +W+ MIV A G + ++ MF +M +++PDE+ ++G+L+AC+
Sbjct: 285 DAVSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMFERMRSENVQPDEITFLGLLNACS 344
Query: 177 H 177
H
Sbjct: 345 H 345
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 80/159 (50%), Gaps = 8/159 (5%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
AR FD M E D V++ ++ GY R E LF E+ +++ D +T S+L A A
Sbjct: 84 ARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAV 143
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTM 136
+AL+ G + K V ++++ LI+MY C DV+ A + + M
Sbjct: 144 AKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAM 203
Query: 137 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
I G A ++AL +F +M ++KP+E+ + VLS+C
Sbjct: 204 ITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSC 242
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ + G +D A F+ M +D W+AMI Y + ++ +F+ M++ N+
Sbjct: 271 TALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMFERMRSENVQ 330
Query: 70 GDEFTIVSILTARANLRALDLG 91
DE T + +L A ++ ++ G
Sbjct: 331 PDEITFLGLLNACSHTGLVEEG 352
>gi|15220333|ref|NP_171976.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75192500|sp|Q9MAT2.1|PPR10_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g04840
gi|7211995|gb|AAF40466.1|AC004809_24 F13M7.17 [Arabidopsis thaliana]
gi|332189629|gb|AEE27750.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 665
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 106/183 (57%), Gaps = 8/183 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ SW+ ++ Y++ G+++ A+Q F+ MPE++ V WT +I+G+ + + A++ +
Sbjct: 222 MPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTY 281
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM + +E+TI ++L+A + AL G I YI N +K D G AL+DMY C
Sbjct: 282 FEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKC 341
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+++ A KD SWT MI G A+ G +A+ F QM+ + KPDEV ++ VL
Sbjct: 342 GELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVL 401
Query: 173 SAC 175
+AC
Sbjct: 402 TAC 404
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 41/173 (23%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPER----DYVLWTAMIDGYLRVNRFREALTLFQEMQTS 66
++V Y GQ+ A Q F++ P+R ++W +I+GY R A TLF+ M
Sbjct: 166 SLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYCRAKDMHMATTLFRSMPER 225
Query: 67 NIMGDEFTIVSILTARANLRALDLGEW---IKTYIDKNKVKNDIFAGNALIDMYCICADV 123
N G W IK Y+D ++ L ++
Sbjct: 226 NS----------------------GSWSTLIKGYVDSGELNR----AKQLFELM------ 253
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+K+ SWTT+I G + +G+ + A+ + +ML +KP+E VLSAC+
Sbjct: 254 --PEKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACS 304
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G++D A F M +D + WTAMI G+ RF +A+ F++M S
Sbjct: 332 TALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEK 391
Query: 70 GDEFTIVSILTARANLRALDLG 91
DE +++LTA N +DLG
Sbjct: 392 PDEVVFLAVLTACLNSSEVDLG 413
>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 687
Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 105/175 (60%), Gaps = 8/175 (4%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
AI+ Y ++ A++ F+++ E+D + WT+M+ G + F+EAL LFQ+MQ + I
Sbjct: 253 AILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIEL 312
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--- 127
DE T+V +L+A A ALD G++I IDK ++ D+ AL+DMY C ++ A
Sbjct: 313 DEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVF 372
Query: 128 -----KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
++ F+W +I GLA+ G+G+ A+ +F QM + PD+V ++ +L AC+H
Sbjct: 373 RRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSH 427
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 98/181 (54%), Gaps = 9/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM- 63
D+ A++ Y N G A FD+ RD V W MI+ +L +A L EM
Sbjct: 145 DLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMT 204
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ N+ DE T+VS++ A A L L+ G+++ +Y + + ++ NA++DMYC C D+
Sbjct: 205 KLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDI 264
Query: 124 EKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E AQ KD SWT+M+ GLA SG +AL +F +M I+ DE+ VGVLSAC
Sbjct: 265 ESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSAC 324
Query: 176 T 176
Sbjct: 325 A 325
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 81/169 (47%), Gaps = 11/169 (6%)
Query: 18 NRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVS 77
+ G ++ AR+ F QM D + MI GY R EA++L+ M + D +T
Sbjct: 57 HSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPF 116
Query: 78 ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY-------CICADV--EKAQK 128
+L A A L A+ LG + KN +D+F NALI Y C C DV E +
Sbjct: 117 VLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCAC-DVFDESTVR 175
Query: 129 DKFSWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVAYVGVLSACT 176
D +W MI G +KA D+ +M + +++PDEV V ++ AC
Sbjct: 176 DVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACA 224
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 85/181 (46%), Gaps = 12/181 (6%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N D++ TA+V Y G +D+A Q F +M R+ W A+I G +A++LF +
Sbjct: 346 NCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQ 405
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
M+ +M D+ T +++L A ++ +D G + +K +++ + ++D+ C
Sbjct: 406 MEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRAR 465
Query: 122 DVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
V+ A + + W T++ G+ D A + +++ ++PD +L
Sbjct: 466 KVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIE--LEPDSCGRYVML 523
Query: 173 S 173
S
Sbjct: 524 S 524
>gi|345505220|gb|AEN99834.1| chlororespiratory reduction 4 [Draba nemorosa]
Length = 612
Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 72/187 (38%), Positives = 106/187 (56%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV++W +V Y G V A+ FD+MP RD V + +MI GY++ +EA+ +F
Sbjct: 278 MPKRDVVTWATMVDGYAKLGFVHQAKSLFDRMPLRDVVAYNSMITGYVQNRYHKEAIGIF 337
Query: 61 QEMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+M+ S++ DE T+V +L+A A L L I YI NK + G ALID Y
Sbjct: 338 NDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLGGKLGVALIDTYSK 397
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C ++K+ K W MI GLAI G G+ A DM Q+ + SIKPD++ ++GV
Sbjct: 398 CGSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIEKRSIKPDDITFIGV 457
Query: 172 LSACTHN 178
L+AC+H+
Sbjct: 458 LNACSHS 464
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 49/183 (26%)
Query: 2 KNKDVISWTAIVSRYINRGQ-VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ K++ISW ++S Y R V++A++ FD+MPE+D + W ++IDGY++ R +A +LF
Sbjct: 216 EKKNLISWNFMISGYAQRADGVNVAKKLFDEMPEKDLISWNSLIDGYVKHGRMEDAKSLF 275
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M K D+ ++D Y
Sbjct: 276 NKMP---------------------------------------KRDVVTWATMVDGYAKL 296
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGV 171
V +A+ +D ++ +MI G + +A+ +F+ M + S + PDE V V
Sbjct: 297 GFVHQAKSLFDRMPLRDVVAYNSMITGYVQNRYHKEAIGIFNDMEKESHLSPDETTLVIV 356
Query: 172 LSA 174
LSA
Sbjct: 357 LSA 359
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 86/185 (46%), Gaps = 23/185 (12%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM- 63
D+ ++ YI G + ARQ FD+MP RD V + +MIDGY++ A LF M
Sbjct: 155 DLYLQNCLIGLYIKCGCLGYARQVFDRMPRRDSVSYNSMIDGYVKCGMIESARGLFDLMP 214
Query: 64 -QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ N++ F ++S RA+ G + + + D+ + N+LID Y
Sbjct: 215 KEKKNLISWNF-MISGYAQRAD------GVNVAKKLFDEMPEKDLISWNSLIDGYVKHGR 267
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGVLS 173
+E A ++D +W TM+ G A G +A +F +M LR D VAY +++
Sbjct: 268 MEDAKSLFNKMPKRDVVTWATMVDGYAKLGFVHQAKSLFDRMPLR-----DVVAYNSMIT 322
Query: 174 ACTHN 178
N
Sbjct: 323 GYVQN 327
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIK 95
D LW A+I + R+AL LF M + + D+F++ +L A + L + G I
Sbjct: 85 DPFLWNAVIKSHSHGLDPRKALLLFCLMLETGVSVDKFSLSLVLKACSRLGFVKEGMQIH 144
Query: 96 TYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGD 147
++ K + +D++ N LI +Y C + A ++D S+ +MI G G +
Sbjct: 145 GFLRKTGIWSDLYLQNCLIGLYIKCGCLGYARQVFDRMPRRDSVSYNSMIDGYVKCGMIE 204
Query: 148 KALDMFSQMLR 158
A +F M +
Sbjct: 205 SARGLFDLMPK 215
>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 766
Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 101/185 (54%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ SW +++ Y G + AR+ FD MP+RD V W A+I GY + + EAL +F
Sbjct: 323 MPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMF 382
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
E++ + T L+ A++ AL+LG+ I K F GNAL+ MY C
Sbjct: 383 VEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKC 442
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+++A +KD SW TM+ G A G G +AL +F M A +KPDE+ VGVL
Sbjct: 443 GSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVL 502
Query: 173 SACTH 177
SAC+H
Sbjct: 503 SACSH 507
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 87/183 (47%), Gaps = 16/183 (8%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D ISW ++S Y G + AR+ FD+ P RD WTAM+ GY++ EA T F
Sbjct: 230 MPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFF 289
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM N E + +++ + +D+ + + +N I + N +I Y
Sbjct: 290 DEMPEKN----EVSYNAMIAGYVQTKKMDIA---RELFESMPCRN-ISSWNTMITGYGQI 341
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
D+ +A Q+D SW +I G A SG+ ++AL+MF ++ + + + L
Sbjct: 342 GDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCAL 401
Query: 173 SAC 175
S C
Sbjct: 402 STC 404
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 20/182 (10%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+SW +++S Y G VD AR+ FD MPE++ + W ++ Y+ R EA LF
Sbjct: 137 MPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLF 196
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ +++ + ++ + L W+ DK V+ D + N +I Y
Sbjct: 197 ESKSDWDLI----SWNCLMGGFVRKKKLGDARWL---FDKMPVR-DAISWNTMISGYAQG 248
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ +A+ +D F+WT M+ G +G D+A F +M + +EV+Y ++
Sbjct: 249 GGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM----PEKNEVSYNAMI 304
Query: 173 SA 174
+
Sbjct: 305 AG 306
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 13/159 (8%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+++ Y G +D A F+ + E+D V W M+ GY R R+ALT+F+ M+T+ +
Sbjct: 434 ALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKP 493
Query: 71 DEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
DE T+V +L+A ++ LD G E+ + V +ID+ +E+A
Sbjct: 494 DEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDL 553
Query: 127 ------QKDKFSWTTMIVGLAISGN---GDKALDMFSQM 156
Q SW ++ I GN G+KA +M +M
Sbjct: 554 IRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKM 592
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 51/186 (27%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+K+ D++ W +S ++ G D A F+ MP R V + AMI GYLR ++F A LF
Sbjct: 44 VKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLF 103
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY--- 117
+M + D+F+ N ++ Y
Sbjct: 104 DQMP---------------------------------------ERDLFSWNVMLTGYVRN 124
Query: 118 CICADVEK-----AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
C D + +KD SW +++ G A +G D+A ++F M + + +++ G+L
Sbjct: 125 CRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNM----PEKNSISWNGLL 180
Query: 173 SACTHN 178
+A HN
Sbjct: 181 AAYVHN 186
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 10/145 (6%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + +S+ A++S Y+ + ++AR FDQMPERD W M+ GY+R R +A LF
Sbjct: 75 MPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLF 134
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVK-NDIFAG---NALID 115
M +++ + S+L+ A +D E +KN + N + A N I+
Sbjct: 135 DLMPEKDVV----SWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIE 190
Query: 116 MYCICADVEKAQKDKFSWTTMIVGL 140
C+ + K+ D SW ++ G
Sbjct: 191 EACLLFE-SKSDWDLISWNCLMGGF 214
>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 609
Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats.
Identities = 69/175 (39%), Positives = 104/175 (59%), Gaps = 8/175 (4%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
++V Y G + A Q F+ M RD V W ++I+G+ EALTL++EM + +
Sbjct: 176 SLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEP 235
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK-- 128
D FT+VS+L+A L AL LGE + Y+ K + + A NAL+D+Y C + AQK
Sbjct: 236 DGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVF 295
Query: 129 ------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
SWT++IVGLA++G G++AL +F ++ R +KP E+ +VGVL AC+H
Sbjct: 296 DEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSH 350
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 9/163 (5%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT-SNIMGDEFTIVSILT 80
+ A Q F+Q+ + W MI G+ A+ LF +M S+I+ D T +
Sbjct: 85 MSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFK 144
Query: 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFS 132
A A L + LGE I + + +N + F N+L+ MY + E A +D+ +
Sbjct: 145 AVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVA 204
Query: 133 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
W ++I G A++G ++AL ++ +M ++PD V +LSAC
Sbjct: 205 WNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSAC 247
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 3/118 (2%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRF-REALTLFQEMQTSNIM 69
A++ Y G A++ FD+M ER V WT++I G L VN EAL LF E++ +
Sbjct: 277 ALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVG-LAVNGLGNEALKLFGELERQGLK 335
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126
E T V +L A ++ LD G + + ++ + I ++D+ C V A
Sbjct: 336 PSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDA 393
>gi|356533546|ref|XP_003535324.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Glycine max]
Length = 483
Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 104/186 (55%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++ DV+ W ++ + G ++ + F QM ER V W M+ + N+ +AL LF
Sbjct: 167 MRDPDVVVWNLMIRGFCKMGDLETGMKVFGQMKERTVVSWNLMMSCLAKNNKEEKALELF 226
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYID-KNKVKNDIFAGNALIDMYCI 119
EM D+ ++V++L A L A+D+GEWI +Y + K +++ I GN+L+D YC
Sbjct: 227 NEMLEQGFEPDDASLVTVLPVCARLGAVDIGEWIHSYANSKGFLQDTINVGNSLVDFYCK 286
Query: 120 CADVEK--------AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C +++ A K+ SW MI GLA +G G+ +++F +M+ +P++ +VGV
Sbjct: 287 CGNLQAAWSIFNDMASKNVVSWNAMISGLAYNGEGEVGVNLFEEMVHGGFEPNDSTFVGV 346
Query: 172 LSACTH 177
L+ C H
Sbjct: 347 LACCAH 352
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 39/195 (20%)
Query: 21 QVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80
+V A + F + +L+ A+I + F + + F M+T I DE+T+ +
Sbjct: 55 RVPYATRLFAHTHNPNILLFNAIIKAHSLHPPFHASFSFFSLMKTRAISPDEYTLAPLFK 114
Query: 81 ARANLRALDLGEWIKTYI--------------------------DKNKV-----KNDIFA 109
+ +NLR LG + ++ D +KV D+
Sbjct: 115 SASNLRYYVLGGCVHAHVVRLGFTRHASVRVAALEVYASCERMGDASKVFDEMRDPDVVV 174
Query: 110 GNALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI 161
N +I +C D+E ++ SW M+ LA + +KAL++F++ML
Sbjct: 175 WNLMIRGFCKMGDLETGMKVFGQMKERTVVSWNLMMSCLAKNNKEEKALELFNEMLEQGF 234
Query: 162 KPDEVAYVGVLSACT 176
+PD+ + V VL C
Sbjct: 235 EPDDASLVTVLPVCA 249
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
++V Y G + A F+ M ++ V W AMI G + LF+EM
Sbjct: 279 SLVDFYCKCGNLQAAWSIFNDMASKNVVSWNAMISGLAYNGEGEVGVNLFEEMVHGGFEP 338
Query: 71 DEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127
++ T V +L A++ +D G + + K KV + ++D+ C V +A+
Sbjct: 339 NDSTFVGVLACCAHVGLVDRGRDLFASMSVKFKVSPKLEHYGCVVDLLGRCGHVREAR 396
>gi|297823163|ref|XP_002879464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325303|gb|EFH55723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 713
Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 109/182 (59%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+ + + TA+V Y G + AR+ FD + ERD LWT++I GY++ + EAL L++ M
Sbjct: 344 RHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRM 403
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+T+ I+ ++ T+ S+L A ++L L+LG+ + + K+ ++ G+AL MY C +
Sbjct: 404 KTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYTKCGSL 463
Query: 124 E--------KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E KD SW MI GL+ +G GD+AL++F +ML +PD+V +V ++SAC
Sbjct: 464 EDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGTEPDDVTFVNIISAC 523
Query: 176 TH 177
+H
Sbjct: 524 SH 525
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 95/175 (54%), Gaps = 10/175 (5%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+V+ Y ++ A + FD +R+ + W+AM+ GY + EA+ LF M ++ I
Sbjct: 250 ALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAIKLFSRMFSAGIKP 309
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY----CICADVEKA 126
E+TIV +L A +++ L G+ + +++ K + +FA AL+DMY C+ AD K
Sbjct: 310 SEYTIVGVLNACSDICYLVEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCL-ADARKG 368
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
++D WT++I G + + ++AL ++ +M A I P++ VL AC+
Sbjct: 369 FDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACS 423
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 11/148 (7%)
Query: 37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKT 96
Y W LR + + ++ +E + + ++ ++L++ A + LG I
Sbjct: 178 YGFWLCYKKDVLR-RQLKSSICFLEEKEKES--DSDYVFTAVLSSLAATVYVGLGRQIHG 234
Query: 97 YIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTMIVGLAISGNGDK 148
KN + + NAL+ MY C + +A K + +W+ M+ G + +G +
Sbjct: 235 ITVKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLE 294
Query: 149 ALDMFSQMLRASIKPDEVAYVGVLSACT 176
A+ +FS+M A IKP E VGVL+AC+
Sbjct: 295 AIKLFSRMFSAGIKPSEYTIVGVLNACS 322
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLR---VNRFREALTLFQEMQTSNI 68
+V+ Y GQ+ A F+ + +D V W ++I GY + ++ + LF+EM+ +I
Sbjct: 57 LVNFYAKCGQLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSHTVMQLFREMRAQDI 116
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC 118
+ + +T+ I A ++L++ +G + K DI+ +L+ MYC
Sbjct: 117 LPNAYTLAGIFKAESSLQSCTVGRQAHALVVKMSSFGDIYVDTSLVGMYC 166
>gi|125540362|gb|EAY86757.1| hypothetical protein OsI_08137 [Oryza sativa Indica Group]
Length = 493
Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 110/188 (58%), Gaps = 11/188 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+SW ++ Y G + AR+ FD+MP R+ W +MI G L+ + EAL +F
Sbjct: 165 MPEKNVVSWNTMLGAYARAGMLPKARKLFDRMPSRNAATWGSMITGLLQSDHCEEALRVF 224
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK--NKVKNDIFAGNALIDMYC 118
+M ++ +E +VS ++A LR ++ G W+ Y ++ N + + A A++DMY
Sbjct: 225 SDMVACGVVPNEPALVSTVSACTQLRWMEHGTWVHGYAERELNGAMSAVLA-TAIVDMYG 283
Query: 119 ICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C + A ++ +SW +MI GLA++G+ +AL +F +M A ++P+++ ++G
Sbjct: 284 KCGSIRDAVRVFAAMPVRNIYSWNSMIAGLAMNGSERQALSLFWKMQLAGVRPNDITFIG 343
Query: 171 VLSACTHN 178
+LSAC+H+
Sbjct: 344 LLSACSHS 351
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TAIV Y G + A + F MP R+ W +MI G R+AL+LF +MQ + +
Sbjct: 276 TAIVDMYGKCGSIRDAVRVFAAMPVRNIYSWNSMIAGLAMNGSERQALSLFWKMQLAGVR 335
Query: 70 GDEFTIVSILTARANLRALDLGEWI 94
++ T + +L+A ++ +D G W+
Sbjct: 336 PNDITFIGLLSACSHSGLVDEGRWL 360
>gi|297723953|ref|NP_001174340.1| Os05g0313600 [Oryza sativa Japonica Group]
gi|222631076|gb|EEE63208.1| hypothetical protein OsJ_18018 [Oryza sativa Japonica Group]
gi|255676232|dbj|BAH93068.1| Os05g0313600 [Oryza sativa Japonica Group]
Length = 620
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 105/182 (57%), Gaps = 9/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + +A+V Y G++ AR+ FD + ++D V W AMI GY + EA++LF M+
Sbjct: 264 DSLVGSALVGMYEKCGEIAEARRVFDSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNMK 323
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ + D+ T+ +L+A + + AL+LG + Y + N+++ G AL+DMY C D++
Sbjct: 324 KAGVCPDKITLAGVLSACSAVGALELGSELDGYASCRGLYNNVYVGTALVDMYAKCGDLD 383
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVAYVGVLSAC 175
KA K+ SW +I GLA +G GD+A+ F M +KPD++ ++GVLSAC
Sbjct: 384 KAIEVFRKMRCKNVASWNALICGLAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSAC 443
Query: 176 TH 177
H
Sbjct: 444 VH 445
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 9/161 (5%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-QTSNIMGDEFTIVSILTARA 83
AR+ F+ +P RD V W AM+ Y RV E + ++M + ++ + T+ +L A
Sbjct: 182 ARKVFNGIPSRDVVSWNAMMKAYGRVGMNGEVGRMLRDMVKDGAVVPNAVTLAVVLAACR 241
Query: 84 NLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTT 135
+ L LG W++ + ++ D G+AL+ MY C ++ +A+ KD +W
Sbjct: 242 DEGDLVLGRWVEEWSKSAGMETDSLVGSALVGMYEKCGEIAEARRVFDSIIDKDVVAWNA 301
Query: 136 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
MI G A +G ++A+ +F M +A + PD++ GVLSAC+
Sbjct: 302 MITGYAQNGMSNEAISLFHNMKKAGVCPDKITLAGVLSACS 342
>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 697
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 107/191 (56%), Gaps = 14/191 (7%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++VI+ T+++S Y AR F +M ER+ V W A+I GY + EAL+LF
Sbjct: 315 MPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLF 374
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVK------NDIFAGNALI 114
++ ++ ++ +IL A A+L L LG ++ K+ K +DIF GN+LI
Sbjct: 375 CLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLI 434
Query: 115 DMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 166
DMY C VE+ ++D SW MI+G A +G G++AL++F +ML + KPD +
Sbjct: 435 DMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHI 494
Query: 167 AYVGVLSACTH 177
+GVLSAC H
Sbjct: 495 TMIGVLSACGH 505
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 100/184 (54%), Gaps = 8/184 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ +W ++V+ G +D A F MPERD W +M+ G+ + +R EAL F
Sbjct: 81 MPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYF 140
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M + +E++ S+L+A + L ++ G + + I K+ +D++ G+AL+DMY C
Sbjct: 141 AMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKC 200
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+V AQ ++ SW ++I +G +ALD+F ML + ++PDEV V+
Sbjct: 201 GNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVI 260
Query: 173 SACT 176
SAC
Sbjct: 261 SACA 264
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 102/212 (48%), Gaps = 40/212 (18%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV +A+V Y G V+ A++ FD+M +R+ V W ++I + + EAL +FQ M
Sbjct: 186 DVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMML 245
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN-KVKNDIFAGNALIDMYCICADV 123
S + DE T+ S+++A A+L A+ +G+ + + KN K++NDI NA +DMY C+ +
Sbjct: 246 ESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRI 305
Query: 124 EK---------------------------------------AQKDKFSWTTMIVGLAISG 144
++ A+++ SW +I G +G
Sbjct: 306 KEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNG 365
Query: 145 NGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
++AL +F + R S+ P ++ +L AC
Sbjct: 366 ENEEALSLFCLLKRESVCPTHYSFANILKACA 397
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 39/123 (31%)
Query: 93 WIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA-------------------------- 126
++ + K+ N+IF N LID Y C +E
Sbjct: 41 YVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLG 100
Query: 127 -------------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
++D+ +W +M+ G A ++AL F+ M + +E ++ VLS
Sbjct: 101 FLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLS 160
Query: 174 ACT 176
AC+
Sbjct: 161 ACS 163
>gi|296084001|emb|CBI24389.3| unnamed protein product [Vitis vinifera]
Length = 665
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 109/184 (59%), Gaps = 8/184 (4%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
+ KDVISWT +++ + N+G++ + + F MP++D + WTA+I G++ + EA+ F
Sbjct: 350 QQKDVISWTTMITGFSNKGKMGKSIELFRMMPKQDDIAWTAVISGFVGNGEYEEAIYWFI 409
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
EM + + T+ S+L+A A L L+ G I T + K ++ D+ N+L+ MY C
Sbjct: 410 EMLRKVVRPNPLTLSSVLSASAGLATLNQGLQIHTLVVKMGMEFDLSIQNSLVSMYTKCG 469
Query: 122 DVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+V + + S+ +MI G A +G G++AL++F +ML KP+E+ ++GVLS
Sbjct: 470 NVADGHQIFTSINSPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNEITFLGVLS 529
Query: 174 ACTH 177
ACTH
Sbjct: 530 ACTH 533
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 100/218 (45%), Gaps = 44/218 (20%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DVISW+++V Y +G++ AR+ F++MPER+ V WTAMIDG++++ + LF
Sbjct: 185 MGERDVISWSSMVDGYCKKGKIGHARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLF 244
Query: 61 QEMQTSNIMG-DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
M+ + + T+ + A + G + + + + D+F GNA+I MYC
Sbjct: 245 LRMRKEGFVKVNPTTLTVMFEACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCR 304
Query: 120 CADVEKA---------------------------------------QKDKFSWTTMIVGL 140
+ V +A QKD SWTTMI G
Sbjct: 305 FSFVVEARKIFDMMNRKDVVSWNALIAGYVQNDEVEEGYVLFEKTQQKDVISWTTMITGF 364
Query: 141 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+ G K++++F M K D++A+ V+S N
Sbjct: 365 SNKGKMGKSIELFRMM----PKQDDIAWTAVISGFVGN 398
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 16/166 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFR--EALT 58
M +K+ ISWTA+++ Y G + AR+ F++MP+R + AMI Y R N EA
Sbjct: 57 MPHKNAISWTAMLTAYYENGHIAKARKMFEKMPQRTTASYNAMITAYTRSNPMMIGEASK 116
Query: 59 LFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC 118
LF EM+ N + +++T A +D E + Y++ D NALI Y
Sbjct: 117 LFAEMRERN----SISYAAMITGLARAGMVDNAE--ELYLETPVEWRDPVCSNALISGYL 170
Query: 119 ICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
+E+A ++D SW++M+ G G A ++F +M
Sbjct: 171 KVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERM 216
>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 657
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 65/185 (35%), Positives = 98/185 (52%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V++WT+++ G VD R F+QMPER+ V W AMI Y++ R E L L+
Sbjct: 276 MPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLY 335
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M++ I DEFT+ +L+A L G+ I Y+ N + N+L+DMY C
Sbjct: 336 NRMRSLGITPDEFTLAGVLSACGQNGDLASGKMIHCYVRDNFNDPGVTLLNSLLDMYARC 395
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
V+ A K+ SW +I LA+ G + + F M+ + PDE+ +VG+L
Sbjct: 396 GQVDTAIGLFTEMPNKNVISWNVIIGALAMHGRAQETVTFFRTMVSDAFSPDEITFVGLL 455
Query: 173 SACTH 177
SAC+H
Sbjct: 456 SACSH 460
Score = 92.8 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 39/207 (18%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ + + G + +R+ F +M +R+ V W MI GY + EA LF EM+ ++
Sbjct: 154 ALLHFHASAGSLRDSRRFFGEMADRNVVSWNTMIGGYAQAGEVSEACALFGEMRHQGLLA 213
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--- 127
D FT+VS+L A ++ L++G + ++ + + D GNAL+DMY C D+ A
Sbjct: 214 DVFTLVSLLFACSSEGNLEVGRLVHCHMLVSGSRVDRILGNALLDMYGKCGDLWMAHRCF 273
Query: 128 -----KDKFSWTTMIVGLAISGNGD-------------------------------KALD 151
K+ +WT+M+ A G+ D + LD
Sbjct: 274 DMMPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERNIVSWNAMISCYVQCGRLHETLD 333
Query: 152 MFSQMLRASIKPDEVAYVGVLSACTHN 178
++++M I PDE GVLSAC N
Sbjct: 334 LYNRMRSLGITPDEFTLAGVLSACGQN 360
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 8/160 (5%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
AR+ FD++PE D ++ ++ Y + +EAL L + + I+ +EFT+ +L A
Sbjct: 67 ARRLFDRIPEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLKACTT 126
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKFSWTTM 136
+RA++ + K IF NAL+ + + E A ++ SW TM
Sbjct: 127 VRAVEHALAAHGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMADRNVVSWNTM 186
Query: 137 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
I G A +G +A +F +M + D V +L AC+
Sbjct: 187 IGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLLFACS 226
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 25/165 (15%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y GQVD A F +MP ++ + W +I R +E +T F+ M +
Sbjct: 387 SLLDMYARCGQVDTAIGLFTEMPNKNVISWNVIIGALAMHGRAQETVTFFRTMVSDAFSP 446
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDK 130
DE T V +L+A ++ L+ GE+ Y + A+ +Y + +VE
Sbjct: 447 DEITFVGLLSACSHGGLLEAGEY---YFE------------AMARVYNVEPEVEH----- 486
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ L G+ KA+++ M SIKPD V + +L AC
Sbjct: 487 --YGCMVDLLGRRGHLAKAVNLIKDM---SIKPDVVVWGALLGAC 526
>gi|297797141|ref|XP_002866455.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp.
lyrata]
gi|297312290|gb|EFH42714.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp.
lyrata]
Length = 1401
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 103/184 (55%), Gaps = 8/184 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+DV+++ ++ + ++ AR+ FD MP RD V W ++I GY ++N+ REA++LF E
Sbjct: 594 QRDVVTYNVLIDGLVKACEIVRARELFDSMPFRDLVSWNSLIAGYAQMNQCREAISLFDE 653
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M + D IVS L+A A L+ G+ I Y K ++ D F L+D Y C
Sbjct: 654 MIGLGLKPDNVAIVSTLSACAQSGDLEKGKAIHDYTKKKRLFIDSFLATGLVDFYAKCGF 713
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
++ A K F+W MI GLA+ GNG+ +D F +M+ + IKPD V+++ VL
Sbjct: 714 IDTAMEIFHLSSDKTLFTWNAMITGLAMHGNGELTVDYFHKMVSSGIKPDGVSFISVLVG 773
Query: 175 CTHN 178
C+H+
Sbjct: 774 CSHS 777
>gi|215741011|dbj|BAG97506.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 483
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 103/185 (55%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++D++ W +++ Y G++D AR F++MPER+ + W+ +IDGY+R EAL F
Sbjct: 133 MPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFF 192
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
Q M I D V + A A L AL+ G W+ +Y++K KV D+ ALIDMY C
Sbjct: 193 QRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKC 252
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ A +K +W MIVGL G G A+ +F+QM D+++ + VL
Sbjct: 253 GRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSILAVL 312
Query: 173 SACTH 177
++CTH
Sbjct: 313 TSCTH 317
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M+ + + D +T ++L A +G + + + D+F NALI YC D
Sbjct: 1 MRRAAVAPDAYTFPAVLKACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGD 60
Query: 123 VEKAQK-------DKFSWTTMIVGLAISGNGDKALDMFSQM 156
+K D SW +M+ G G D A D+F +M
Sbjct: 61 CRSGRKVFDHGVRDLVSWNSMVAGYVGCGEVDLAQDLFDEM 101
>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 69/186 (37%), Positives = 106/186 (56%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++SW+ +V Y G +D+AR FD+ P ++ VLWT +I GY REA L+
Sbjct: 245 MPWRNIVSWSTMVCGYSKGGDMDMARMLFDRCPVKNVVLWTTIIAGYAEKGLAREATELY 304
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY--C 118
+M+ + + D+ ++SIL A A L LG+ I + + + + NA IDMY C
Sbjct: 305 GKMEEAGMRPDDGFLLSILAACAESGMLGLGKRIHASMRRWRFRCGAKVLNAFIDMYAKC 364
Query: 119 ICADVE-------KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C D A+KD SW +MI G A+ G+G+KAL++FS M++ +PD +VG+
Sbjct: 365 GCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSWMVQEGFEPDTYTFVGL 424
Query: 172 LSACTH 177
L ACTH
Sbjct: 425 LCACTH 430
Score = 78.6 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/178 (24%), Positives = 84/178 (47%), Gaps = 31/178 (17%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ +DV++W +++ + G++ A + FD+MP+RD V W M+DGY + A LF
Sbjct: 183 MEERDVVTWNSMIGGLVRCGELQGACKLFDEMPDRDMVSWNTMLDGYAKAGEMDTAFELF 242
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M NI+ + +++ + +D+ + D+ VKN +
Sbjct: 243 ERMPWRNIV----SWSTMVCGYSKGGDMDMA---RMLFDRCPVKNVVL------------ 283
Query: 121 ADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
WTT+I G A G +A +++ +M A ++PD+ + +L+AC +
Sbjct: 284 ------------WTTIIAGYAEKGLAREATELYGKMEEAGMRPDDGFLLSILAACAES 329
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 11/143 (7%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFQEMQTSNIMGDEFTIVSILTARA 83
A F+ +P + L+ ++I + + R F +MQ + + D FT +L A +
Sbjct: 72 AVNVFNHVPHPNVHLYNSIIRAHAHNSSHRSLPFNAFFQMQKNGLFPDNFTYPFLLKACS 131
Query: 84 NLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD----------VEKAQKDKFSW 133
+L L I +++K DIF N+LID Y C + + ++D +W
Sbjct: 132 GPSSLPLVRMIHAHVEKIGFYGDIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEERDVVTW 191
Query: 134 TTMIVGLAISGNGDKALDMFSQM 156
+MI GL G A +F +M
Sbjct: 192 NSMIGGLVRCGELQGACKLFDEM 214
>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 596
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 103/181 (56%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+SW +++ I G + A F +M ER+ + W MI GY + + +EAL LF+EMQ
Sbjct: 157 DVVSWNSMIDGCIRNGNILEALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQ 216
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ + +VS+L+A + L ALD G W+ YI K V+ D ALIDMY C ++
Sbjct: 217 MLDQEPNSAILVSVLSACSQLGALDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSID 276
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A ++D ++T I GLA++G ++AL +F QM I PD V+Y+ VL AC+
Sbjct: 277 LAMQAFSTSRKRDVSAYTAAISGLAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACS 336
Query: 177 H 177
H
Sbjct: 337 H 337
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 11/129 (8%)
Query: 39 LWTAMIDGYLRVNRFREALT---LFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIK 95
L+ I G+ R R L+ LF M ++ + FT + +N A DLG
Sbjct: 56 LFNTTIRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFH 115
Query: 96 TYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKFSWTTMIVGLAISGNGD 147
+ KN + D+F N++I Y +C + E ++ D SW +MI G +GN
Sbjct: 116 GMVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNIL 175
Query: 148 KALDMFSQM 156
+AL +FS+M
Sbjct: 176 EALSLFSKM 184
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 69/171 (40%), Gaps = 25/171 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D I A++ Y G +D+A Q F +RD +TA I G EAL LF++M+
Sbjct: 258 DSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLAMNGCSEEALQLFEQMK 317
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
I D + +++L A ++ W++ +D+ +D Y D+
Sbjct: 318 GEGISPDGVSYIAVLCACSH------AGWVEKGFHYFASMSDVHGIRPELDHYACMVDL- 370
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
L +G ++A + M IKPD V + +L AC
Sbjct: 371 ---------------LGRAGLLEEAEKFVASM---PIKPDNVIWGALLGAC 403
>gi|125551786|gb|EAY97495.1| hypothetical protein OsI_19422 [Oryza sativa Indica Group]
Length = 620
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 105/182 (57%), Gaps = 9/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + +A+V Y G++ AR+ FD + ++D V W AMI GY + EA++LF M+
Sbjct: 264 DSLVGSALVGMYEKCGEIAEARRVFDSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNMK 323
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ + D+ T+ +L+A + + AL+LG + Y + N+++ G AL+DMY C D++
Sbjct: 324 KAGVCPDKITLAGVLSACSAVGALELGSELDGYASCRGLYNNVYVGTALVDMYAKCGDLD 383
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVAYVGVLSAC 175
KA K+ SW +I GLA +G GD+A+ F M +KPD++ ++GVLSAC
Sbjct: 384 KAIEVFRKMRCKNVASWNALICGLAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSAC 443
Query: 176 TH 177
H
Sbjct: 444 VH 445
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 9/161 (5%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-QTSNIMGDEFTIVSILTARA 83
AR+ F+ +P RD V W AM+ Y RV E + ++M + ++ + T+ +L A
Sbjct: 182 ARKVFNGIPSRDVVSWNAMMKAYGRVGMNGEVGRMLRDMVKDGAVVPNAVTLAVVLAACR 241
Query: 84 NLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTT 135
+ L LG W++ + ++ D G+AL+ MY C ++ +A+ KD +W
Sbjct: 242 DEGDLVLGRWVEEWSKSAGMETDSLVGSALVGMYEKCGEIAEARRVFDSIIDKDVVAWNA 301
Query: 136 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
MI G A +G ++A+ +F M +A + PD++ GVLSAC+
Sbjct: 302 MITGYAQNGMSNEAISLFHNMKKAGVCPDKITLAGVLSACS 342
>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
Length = 603
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 105/181 (58%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+V +++ Y VD AR FD++ E V + AMI GY R NR EAL+LF+EMQ
Sbjct: 163 NVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQ 222
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ +E T++S+L++ A L +LDLG+WI Y K+ + ALIDM+ C ++
Sbjct: 223 GKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLD 282
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A KD +W+ MIV A G +K++ MF +M +++PDE+ ++G+L+AC+
Sbjct: 283 DAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACS 342
Query: 177 H 177
H
Sbjct: 343 H 343
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 90/187 (48%), Gaps = 15/187 (8%)
Query: 4 KDVISWTAIVSRYIN-------RGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREA 56
K I + V++ IN + AR F+ M E D V++ +M GY R E
Sbjct: 54 KSHIEDVSFVAKLINFCTESPTESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEV 113
Query: 57 LTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116
+LF E+ I+ D +T S+L A A +AL+ G + K + ++++ LI+M
Sbjct: 114 FSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINM 173
Query: 117 YCICADVEKAQK--DKF------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
Y C DV+ A+ D+ + MI G A ++AL +F +M +KP+E+
Sbjct: 174 YTECEDVDSARXVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITL 233
Query: 169 VGVLSAC 175
+ VLS+C
Sbjct: 234 LSVLSSC 240
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ + G +D A F++M +D W+AMI Y + +++ +F+ M++ N+
Sbjct: 269 TALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQ 328
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126
DE T + +L A ++ ++ G ++ + K + I +++D+ ++E A
Sbjct: 329 PDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSXAGNLEDA 386
>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 634
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 66/185 (35%), Positives = 97/185 (52%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+SWT+++ G VD AR F+QMPER+ + W AMI Y++ RF E L L+
Sbjct: 270 MPIKNVVSWTSMLCALAKHGSVDAARDWFEQMPERNIISWNAMISCYVQGGRFPETLGLY 329
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M++ + DE T+ +L+ L G I YI + + N+LIDMY C
Sbjct: 330 NRMKSLGLTPDEVTLAGVLSVHGQNGDLASGRMIHCYIQDSFSDPGVTVLNSLIDMYARC 389
Query: 121 ADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
V E K+ SW +I LA+ G +A+ F M+ + PDE+ +VG+L
Sbjct: 390 GQVDTSISLFTEMPNKNTISWNVIIGALAMHGRAQEAVMFFRAMVSDAFSPDEITFVGLL 449
Query: 173 SACTH 177
SAC+H
Sbjct: 450 SACSH 454
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 9/167 (5%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQM-PERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ V A++ + G + +R+ F +M P R+ V W MI G + EA LF+E
Sbjct: 140 RQVFVGNALLHSSASAGSLRDSRRLFAEMAPHRNVVSWNTMIGGCAQAGETSEACALFRE 199
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M+ ++ D FT VS+L + L++G + ++ + + D+ GNAL+DMY C D
Sbjct: 200 MRRQGVLADVFTFVSLLLVCSKEGNLEVGRLVHCHMLASGSRVDLILGNALVDMYGKCGD 259
Query: 123 VEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI 161
+ A K+ SWT+M+ LA G+ D A D F QM +I
Sbjct: 260 LWMAHRCFDVMPIKNVVSWTSMLCALAKHGSVDAARDWFEQMPERNI 306
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 9/161 (5%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
AR+ FD++P+ D + ++I Y +EAL L +++ I+ +EFT+ +L A +
Sbjct: 60 ARRMFDRVPDPDRFAYNSLIRAYSNSGCPQEALCLHRDVLRRGILPNEFTLPFVLKACSR 119
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ---------KDKFSWTT 135
RA + K +F GNAL+ + ++ ++ SW T
Sbjct: 120 ARAAEHALATHGVAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLFAEMAPHRNVVSWNT 179
Query: 136 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
MI G A +G +A +F +M R + D +V +L C+
Sbjct: 180 MIGGCAQAGETSEACALFREMRRQGVLADVFTFVSLLLVCS 220
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 25/165 (15%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y GQVD + F +MP ++ + W +I R +EA+ F+ M +
Sbjct: 381 SLIDMYARCGQVDTSISLFTEMPNKNTISWNVIIGALAMHGRAQEAVMFFRAMVSDAFSP 440
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDK 130
DE T V +L+A ++ L+ G++ Y A+ +Y + +VE
Sbjct: 441 DEITFVGLLSACSHGGLLEDGQY---YF------------KAMRHIYNVKPEVEH----- 480
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ L G+ KA+D+ M +KPD V + ++ AC
Sbjct: 481 --YACMVDLLGRHGHLAKAVDLIKDM---PMKPDVVVWGALIGAC 520
>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 725
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 108/186 (58%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ TA+VS Y G++D AR FDQ +D V WT MI Y + +EAL +F
Sbjct: 276 MSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVF 335
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EM S I D T++S+++A NL LD +W+ Y N +++ + NALI+MY C
Sbjct: 336 EEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKC 395
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ A+ ++ SW++MI A+ G +L +F+QM + +++P+EV +VGVL
Sbjct: 396 GGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVL 455
Query: 173 SACTHN 178
C+H+
Sbjct: 456 YGCSHS 461
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 92/211 (43%), Gaps = 39/211 (18%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D T ++ Y G+++ AR FD+M +RD V W MI+ Y R EA LF+EM+
Sbjct: 148 DPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMK 207
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY--CICAD 122
SN+M DE + +I++A + I ++ +N V+ D AL+ MY C D
Sbjct: 208 DSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMD 267
Query: 123 V-------------------------------------EKAQKDKFSWTTMIVGLAISGN 145
+ + KD WTTMI A S +
Sbjct: 268 MAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDH 327
Query: 146 GDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+AL +F +M + IKPD V + V+SAC
Sbjct: 328 PQEALRVFEEMCCSGIKPDVVTMLSVISACV 358
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 8/151 (5%)
Query: 33 PERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGE 92
P + +++ +++ R R + +Q ++ D + IL A + + AL G
Sbjct: 75 PLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFEGM 134
Query: 93 WIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKFSWTTMIVGLAISG 144
+ + K +D F L+DMY C + E +Q+D +W TMI G
Sbjct: 135 ELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFG 194
Query: 145 NGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
D+A +F +M +++ PDE+ ++SAC
Sbjct: 195 LLDEAFKLFEEMKDSNVMPDEMILCNIVSAC 225
>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Glycine max]
Length = 705
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 105/181 (58%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV ++++ Y G+V++A + F +P+ V W MI GY+ + EAL LF EM+
Sbjct: 342 DVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMR 401
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
S + D T S+LTA + L AL+ G+ I I + K+ N+ AL+DMY C V+
Sbjct: 402 KSYVESDAITFTSVLTACSQLAALEKGKEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVD 461
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+A ++D SWT+MI G+ AL++F++ML++++KPD VA++ +LSAC
Sbjct: 462 EAFSVFKCLPKRDLVSWTSMITAYGSHGHAYGALELFAEMLQSNVKPDRVAFLAILSACG 521
Query: 177 H 177
H
Sbjct: 522 H 522
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 91/175 (52%), Gaps = 8/175 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+A+V Y G +++A + F+QMP++ V W +MI GY + LF+ M +
Sbjct: 246 SALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVK 305
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK- 128
T+ S++ + L G+++ Y +N+++ D+F ++L+D+Y C VE A+K
Sbjct: 306 PTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKI 365
Query: 129 -------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
SW MI G G +AL +FS+M ++ ++ D + + VL+AC+
Sbjct: 366 FKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACS 420
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 85/181 (46%), Gaps = 10/181 (5%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPER-DYVLWTAMIDGYLRVNRFREALTLFQEM 63
D+ ++++Y++ D A+ FD M + LW ++ GY + + EAL LF+++
Sbjct: 37 DIFLCKTLINQYLSCHLYDHAKCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKL 96
Query: 64 -QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ D +T S+ A L LG+ I T + K + DI G++L+ MY C
Sbjct: 97 LHYPYLKPDSYTYPSVFKACGGLHRYVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNA 156
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
EKA +KD W T+I SGN AL+ F M R +P+ V +S+
Sbjct: 157 FEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISS 216
Query: 175 C 175
C
Sbjct: 217 C 217
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 82/180 (45%), Gaps = 8/180 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D++ +++V Y + A F++MPE+D W +I Y + F++AL F M+
Sbjct: 140 DIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKDALEYFGLMR 199
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ TI + +++ A L L+ G I + + D F +AL+DMY C +E
Sbjct: 200 RFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLE 259
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A +K +W +MI G + G+ + +F +M +KP ++ C+
Sbjct: 260 MAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCS 319
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 75/175 (42%), Gaps = 25/175 (14%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ N +V+ A++ Y G VD A F +P+RD V WT+MI Y AL LF
Sbjct: 440 LDNNEVV-MGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGHAYGALELF 498
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM SN+ D ++IL+A + +D G + N +I++Y I
Sbjct: 499 AEMLQSNVKPDRVAFLAILSACGHAGLVDEG---------------CYYFNQMINVYGII 543
Query: 121 ADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
VE ++ +I L +G +A ++ Q I+ D + SAC
Sbjct: 544 PRVEH-------YSCLIDLLGRAGRLHEAYEILQQ--NPEIRDDVELLSTLFSAC 589
>gi|297811669|ref|XP_002873718.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319555|gb|EFH49977.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 548
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 116/191 (60%), Gaps = 14/191 (7%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +KD ++W +++ + ++D AR+ FD+ E+D V W AMI GY+ +EAL++F
Sbjct: 204 MPDKDQVAWNVMITGCLKCREMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALSIF 263
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYI-DKNKVKNDIFAG----NALID 115
+EM+ + D TI+S+L+A A L L+ G+ + YI + V + I+ G NALID
Sbjct: 264 KEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALID 323
Query: 116 MYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 167
MY C +++A +D +W T+IVGLA+ + + +++MF +M R + P+EV
Sbjct: 324 MYAKCGSIDRAIEVFRGMKDRDLSTWNTLIVGLALH-HAEGSVEMFEEMQRLKVWPNEVT 382
Query: 168 YVGVLSACTHN 178
++GV+ AC+H+
Sbjct: 383 FIGVILACSHS 393
>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 783
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 60/176 (34%), Positives = 97/176 (55%), Gaps = 8/176 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA + Y ++D+AR FD+ PE+ V W AMI GY + A++LF+EM +
Sbjct: 349 TAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFT 408
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
+ TI +IL+A A L +L G+W+ I ++ +I+ AL+DMY C ++ +A
Sbjct: 409 PNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQL 468
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+K+ +W TMI G + G G +AL ++++ML P V ++ VL AC+H
Sbjct: 469 FDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSH 524
Score = 82.0 bits (201), Expect = 9e-14, Method: Composition-based stats.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 8/176 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+V +A+V Y +V AR+ FD MPERD VLW MI+G ++ F +++ LF+EM
Sbjct: 142 NVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMV 201
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ D T+ ++L A A L+ L +G I+ K + LI +Y C DV
Sbjct: 202 ADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVN 261
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
A + D ++ MI G +G + ++ +F ++L + + VG++
Sbjct: 262 TARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLI 317
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 42/179 (23%), Positives = 84/179 (46%), Gaps = 12/179 (6%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ + T + + + AR F +P+ D L+ ++ G+ + +++L+ ++
Sbjct: 43 DLATLTKLTQKLFDFSATRHARALFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLR 102
Query: 65 -TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+N+ D FT + A +N + L L + + + +++F G+AL+D+YC + V
Sbjct: 103 RNTNLSPDNFTYAFAVAACSNDKHLML---LHAHSIIDGYGSNVFVGSALVDLYCKFSRV 159
Query: 124 EKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
A+K D W TMI GL + D ++ +F +M+ ++ D VL A
Sbjct: 160 VYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPA 218
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 27/167 (16%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G + A Q FD M E++ V W MI GY EAL L+ EM
Sbjct: 450 TALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYN 509
Query: 70 GDEFTIVSILTARANLRALDLGEWI-KTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
T +S+L A ++ + GE I ++K +++ LI+ Y D+
Sbjct: 510 PSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIE-------PLIEHYACMVDI----- 557
Query: 129 DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
L SG +KAL+ +M ++P + +L AC
Sbjct: 558 -----------LGRSGQLEKALEFIKKM---PVEPGPAVWGTLLGAC 590
>gi|359479080|ref|XP_003632211.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
mitochondrial [Vitis vinifera]
Length = 744
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 109/184 (59%), Gaps = 8/184 (4%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
+ KDVISWT +++ + N+G++ + + F MP++D + WTA+I G++ + EA+ F
Sbjct: 429 QQKDVISWTTMITGFSNKGKMGKSIELFRMMPKQDDIAWTAVISGFVGNGEYEEAIYWFI 488
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
EM + + T+ S+L+A A L L+ G I T + K ++ D+ N+L+ MY C
Sbjct: 489 EMLRKVVRPNPLTLSSVLSASAGLATLNQGLQIHTLVVKMGMEFDLSIQNSLVSMYTKCG 548
Query: 122 DVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+V + + S+ +MI G A +G G++AL++F +ML KP+E+ ++GVLS
Sbjct: 549 NVADGHQIFTSINSPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNEITFLGVLS 608
Query: 174 ACTH 177
ACTH
Sbjct: 609 ACTH 612
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 100/218 (45%), Gaps = 44/218 (20%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DVISW+++V Y +G++ AR+ F++MPER+ V WTAMIDG++++ + LF
Sbjct: 264 MGERDVISWSSMVDGYCKKGKIGHARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLF 323
Query: 61 QEMQTSNIMG-DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
M+ + + T+ + A + G + + + + D+F GNA+I MYC
Sbjct: 324 LRMRKEGFVKVNPTTLTVMFEACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCR 383
Query: 120 CADVEKA---------------------------------------QKDKFSWTTMIVGL 140
+ V +A QKD SWTTMI G
Sbjct: 384 FSFVVEARKIFDMMNRKDVVSWNALIAGYVQNDEVEEGYVLFEKTQQKDVISWTTMITGF 443
Query: 141 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+ G K++++F M K D++A+ V+S N
Sbjct: 444 SNKGKMGKSIELFRMM----PKQDDIAWTAVISGFVGN 477
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 16/166 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFR--EALT 58
M +K+ ISWTA+++ Y G + AR+ F++MP+R + AMI Y R N EA
Sbjct: 136 MPHKNAISWTAMLTAYYENGHIAKARKMFEKMPQRTTASYNAMITAYTRSNPMMIGEASK 195
Query: 59 LFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC 118
LF EM+ N + +++T A +D E + Y++ D NALI Y
Sbjct: 196 LFAEMRERN----SISYAAMITGLARAGMVDNAE--ELYLETPVEWRDPVCSNALISGYL 249
Query: 119 ICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
+E+A ++D SW++M+ G G A ++F +M
Sbjct: 250 KVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERM 295
>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Glycine max]
Length = 661
Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 62/162 (38%), Positives = 101/162 (62%)
Query: 16 YINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTI 75
Y G + A F+ M +RD V ++I+G+ R EALTLF+EM + D FT+
Sbjct: 175 YAACGDTESAHNVFELMRDRDLVAXISVINGFALNGRPSEALTLFREMSAEGVEPDGFTV 234
Query: 76 VSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTT 135
VS+L+A A L AL+LG + Y+ K ++ + N+L+D+Y C + + +++ SWT+
Sbjct: 235 VSLLSASAELGALELGRRVHVYLLKVGLRENSHVTNSLLDLYAKCDAIWEXERNAVSWTS 294
Query: 136 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+IVGLA++G G++AL++F +M + P E+ +VGVL AC+H
Sbjct: 295 LIVGLAVNGFGEEALELFREMEGQGLVPSEITFVGVLYACSH 336
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 8/158 (5%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A F + + W M GY + AL +++M S I D T +L A +
Sbjct: 83 AYNVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIVSRIEPDTHTYPFLLKAISK 142
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTM 136
+ GE I + +N ++ +F N+L+ +Y C D E A +D + ++
Sbjct: 143 SLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFELMRDRDLVAXISV 202
Query: 137 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
I G A++G +AL +F +M ++PD V +LSA
Sbjct: 203 INGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLLSA 240
Score = 43.5 bits (101), Expect = 0.034, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 12/123 (9%)
Query: 34 ERDYVLWTAMIDGYLRVNRF-REALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLG- 91
ER+ V WT++I G L VN F EAL LF+EM+ ++ E T V +L A ++ LD G
Sbjct: 286 ERNAVSWTSLIVG-LAVNGFGEEALELFREMEGQGLVPSEITFVGVLYACSHCGMLDEGF 344
Query: 92 EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA---------QKDKFSWTTMIVGLAI 142
++ + ++ + I ++D+ V++A Q + +W T++ I
Sbjct: 345 DYFRRMKEEFGIMPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVTWRTLLGACTI 404
Query: 143 SGN 145
G+
Sbjct: 405 HGH 407
>gi|357153639|ref|XP_003576518.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Brachypodium distachyon]
Length = 538
Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 70/187 (37%), Positives = 103/187 (55%), Gaps = 12/187 (6%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V +W ++S Y+ G+VD A F +MP RD V WT +I G R EA+ LF
Sbjct: 215 MPERTVAAWNCMLSAYVRCGEVDAALHFFGEMPGRDAVAWTTVIAGCANAGRAAEAVDLF 274
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN-KVKNDIFAGNALIDMYCI 119
M+ + + D T+V++LTA A L L LG W+ +D++ + + + NALI MY
Sbjct: 275 WRMRKARVKDDAVTMVALLTACAELGDLQLGRWVHARVDQDGQDQRIVLLDNALIHMYVR 334
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C VE A ++ SWTTMI GLAI G ++AL++F +M +PD + V
Sbjct: 335 CGAVEDAHCMFLRMPRRSTVSWTTMISGLAIHGRAEEALELFRRMEE---RPDGATLLAV 391
Query: 172 LSACTHN 178
L AC+H+
Sbjct: 392 LWACSHS 398
>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
Length = 631
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 101/181 (55%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+++SW A+++ Y+ G D A + F QMP D V W MI GY +F +A+ +F M
Sbjct: 191 NLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMML 250
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
T+VS+L+A + L L G WI +Y++KN + D G +LI+MY C +E
Sbjct: 251 KLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIE 310
Query: 125 KA-------QKDKFS-WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A QK K WT +IVGL I G + AL +F +M + +KP+ + ++GVL+AC
Sbjct: 311 SALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACN 370
Query: 177 H 177
H
Sbjct: 371 H 371
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 20/151 (13%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
AR FD++ R + W +I Y+ + + LF E+ + D FT+ ++ A
Sbjct: 69 ARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHEL-VHEYLPDNFTLPCVIKGCAR 127
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK------DK-------- 130
L + G+ I K +D+F +L++MY C +++ A+K DK
Sbjct: 128 LGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSL 187
Query: 131 -----FSWTTMIVGLAISGNGDKALDMFSQM 156
SW MI G SG+ D AL++F QM
Sbjct: 188 IDGNLVSWNAMINGYMKSGDFDSALELFYQM 218
>gi|357120906|ref|XP_003562165.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Brachypodium distachyon]
Length = 529
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 98/185 (52%), Gaps = 11/185 (5%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV++ + + G+VD AR+ FD MP R W+AM+ Y R R ++A+ LF MQ
Sbjct: 205 DVVACNSAIVALTRAGRVDEAREVFDAMPARTVATWSAMVSAYSRAARCQDAVELFSAMQ 264
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
S + + +VS+L A L AL+ G W+ YIDK+ V + AL+DMYC C +
Sbjct: 265 ASGVEPNANVLVSVLGCCAALGALEQGAWVHAYIDKHGVAMNALVVTALVDMYCKCGSIH 324
Query: 125 KAQK-----------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
KA+ SW M++GLA+ G +AL +FS++ + PD V ++ +L
Sbjct: 325 KARHVFDASRSQGLAKLSSWNAMMLGLAVHGQCQEALALFSELETYGLSPDNVTFITILM 384
Query: 174 ACTHN 178
A H+
Sbjct: 385 AYGHS 389
>gi|255540507|ref|XP_002511318.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550433|gb|EEF51920.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 441
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 100/165 (60%), Gaps = 8/165 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G+VD AR+ FDQM RD V W+AMI GY + R +EA+ LF EMQ +N+
Sbjct: 266 TALVDMYAKCGEVDKARRLFDQMDGRDVVAWSAMISGYSQARRCQEAVDLFNEMQMANLD 325
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
+E T+VS+L+ A L AL G+WI YI + + + G AL+D Y C V+ A
Sbjct: 326 PNEVTMVSVLSCCAALGALGTGKWIHLYIKRKGMNLTVTLGTALVDFYGKCGLVDSAIEV 385
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 166
K+ +SWT +I GLA +G G +AL+ + M ++++P++V
Sbjct: 386 FQLMPVKNVYSWTALIQGLANNGQGKRALEYYQLMRESNVEPNDV 430
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 103/179 (57%), Gaps = 8/179 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+ I ++ Y N G+++IAR FD M ERD W +M GY++ + + + LF+EM+
Sbjct: 160 NCIVLNTLIHMYANCGEIEIARNMFDGMSERDIFAWNSMFSGYVKSGYYEDTVRLFEEMR 219
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ ++ T++S+L A L ++LGEWI Y+ N + ++ AL+DMY C +V+
Sbjct: 220 ELGVGFNDITLISVLAACGRLADVELGEWIAKYVRVNGLDRNMNLVTALVDMYAKCGEVD 279
Query: 125 KAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
KA+ +D +W+ MI G + + +A+D+F++M A++ P+EV V VLS C
Sbjct: 280 KARRLFDQMDGRDVVAWSAMISGYSQARRCQEAVDLFNEMQMANLDPNEVTMVSVLSCC 338
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 8/162 (4%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81
++ A FD + D + MI + ++AL F++M + DEFT L A
Sbjct: 76 MEYALSIFDNIDGPDSSAYNIMIRAFTLKRSPQKALAFFKQMLEEAVAFDEFTFPCTLKA 135
Query: 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSW 133
+ LR G+ I I K ++ N LI MY C ++E A ++D F+W
Sbjct: 136 CSRLRGRKEGKQIHAQIVKYGFGSNCIVLNTLIHMYANCGEIEIARNMFDGMSERDIFAW 195
Query: 134 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+M G SG + + +F +M + +++ + VL+AC
Sbjct: 196 NSMFSGYVKSGYYEDTVRLFEEMRELGVGFNDITLISVLAAC 237
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N V TA+V Y G VD A + F MP ++ WTA+I G + + AL +Q
Sbjct: 360 NLTVTLGTALVDFYGKCGLVDSAIEVFQLMPVKNVYSWTALIQGLANNGQGKRALEYYQL 419
Query: 63 MQTSNI 68
M+ SN+
Sbjct: 420 MRESNV 425
>gi|341606385|gb|AEK83295.1| At3g62890-like protein [Capsella grandiflora]
Length = 183
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 103/165 (62%), Gaps = 14/165 (8%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+KD+ +W ++V+ Y G +D AR+ FD+MPER+ + W+ +I+GY +++EAL LF+E
Sbjct: 19 SKDLPAWNSVVNSYAKAGFLDDARKLFDEMPERNVISWSCLINGYFMRGKYKEALDLFRE 78
Query: 63 MQTSN-----IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
MQ + ++FT+ ++L+A L AL+ G+W+ TYIDK++V+ DI G ALIDMY
Sbjct: 79 MQLPKPNEAFVKPNKFTLSTVLSACGRLGALEQGKWVHTYIDKHQVEIDIVLGTALIDMY 138
Query: 118 CICADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMF 153
C +E+A +KD +++ MI LA+ G D+ +F
Sbjct: 139 AKCGSLERAKRVFTALGSKKDVQAYSAMICCLAMYGLTDECFQLF 183
Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 13/86 (15%)
Query: 103 VKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFS 154
V D+ A N++++ Y ++ A+K + SW+ +I G + G +ALD+F
Sbjct: 18 VSKDLPAWNSVVNSYAKAGFLDDARKLFDEMPERNVISWSCLINGYFMRGKYKEALDLFR 77
Query: 155 QML-----RASIKPDEVAYVGVLSAC 175
+M A +KP++ VLSAC
Sbjct: 78 EMQLPKPNEAFVKPNKFTLSTVLSAC 103
>gi|302820595|ref|XP_002991964.1| hypothetical protein SELMODRAFT_23654 [Selaginella moellendorffii]
gi|300140206|gb|EFJ06932.1| hypothetical protein SELMODRAFT_23654 [Selaginella moellendorffii]
Length = 353
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 101/183 (55%), Gaps = 9/183 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
K+V+SWTAIV+ ++D AR FD+MP R+ V W A+I GYL +R +A+ L+ M
Sbjct: 72 KNVVSWTAIVAALAQNKRLDQARDLFDRMPIRNVVSWNAIITGYLDDDRPPDAIDLYYRM 131
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ + D T V++L A A++ L LG I ++ + ++ DI G AL+ MY C
Sbjct: 132 RQEGVPADRVTFVAMLEAAASITNLVLGRVIHSHTQEEGIEGDILVGTALLSMYGRCGCT 191
Query: 124 EKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
E A + D W+ +I + GNG KAL++F ML I P+ V V VLSA
Sbjct: 192 EMAVRTFHGMPPRHDVVVWSALIASFSHCGNGGKALEVFHGMLLDGILPNGVTLVSVLSA 251
Query: 175 CTH 177
C+H
Sbjct: 252 CSH 254
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPER-DYVLWTAMIDGYLRVNRFREALTLFQEM 63
D++ TA++S Y G ++A + F MP R D V+W+A+I + +AL +F M
Sbjct: 174 DILVGTALLSMYGRCGCTEMAVRTFHGMPPRHDVVVWSALIASFSHCGNGGKALEVFHGM 233
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLG 91
I+ + T+VS+L+A +++ A++ G
Sbjct: 234 LLDGILPNGVTLVSVLSACSHIGAVEKG 261
Score = 38.9 bits (89), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNK--VKNDIFAGNALIDMYCICADVEKA-- 126
DE T+VS + A A+ L +G + + + + D GN+LI++Y C E+A
Sbjct: 4 DEVTVVSAIDACAHQGDLAMGIAVHSDLASSGGIEIEDAAVGNSLINLYGKCRMAEEALE 63
Query: 127 -------QKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
+K+ SWT ++ LA + D+A D+F +M
Sbjct: 64 VFQSMRCRKNVVSWTAIVAALAQNKRLDQARDLFDRM 100
>gi|225437286|ref|XP_002266871.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 468
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 110/182 (60%), Gaps = 8/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ ++++ Y + G + + + FD+MP RD V WT +I GY R+ +AL F++MQ
Sbjct: 143 DIYVQNSLLNVYASCGDMGLCMRVFDEMPHRDVVSWTVLITGYRSAERYDDALIAFEQMQ 202
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ ++ + T+V+ L+A A+ AL++G WI +I ++ + D+ G +LIDMY C +E
Sbjct: 203 YAGVVPNHVTMVNALSACADFGALEMGVWIHEFIRRSGWEFDVILGTSLIDMYGKCGRIE 262
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+ +K+ F+W ++I GLA++ +G +A+ F +M + IK DEV + VL AC+
Sbjct: 263 EGLVVFRSMKEKNVFTWNSLIKGLALARSGAEAVWWFYRMEQEGIKADEVTLIAVLCACS 322
Query: 177 HN 178
H+
Sbjct: 323 HS 324
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 8/155 (5%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88
F + + ++I + + +++ M +++I+ + FT +L + A+ + L
Sbjct: 66 FTHHSKPHVFICNSLIRAFSHNHTPHTPFSIYTHMHSNSILPNNFTFPFLLKSLADFKGL 125
Query: 89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKFSWTTMIVGL 140
G+ I T++ K +DI+ N+L+++Y C D+ E +D SWT +I G
Sbjct: 126 SEGQCIHTHVVKLGQFDDIYVQNSLLNVYASCGDMGLCMRVFDEMPHRDVVSWTVLITGY 185
Query: 141 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ D AL F QM A + P+ V V LSAC
Sbjct: 186 RSAERYDDALIAFEQMQYAGVVPNHVTMVNALSAC 220
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 17/182 (9%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DVI T+++ Y G+++ F M E++ W ++I G EA+ F M+
Sbjct: 244 DVILGTSLIDMYGKCGRIEEGLVVFRSMKEKNVFTWNSLIKGLALARSGAEAVWWFYRME 303
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAG----NALIDMYCIC 120
I DE T++++L A ++ + +G I + K + F G +ID+
Sbjct: 304 QEGIKADEVTLIAVLCACSHSGMVQMGRQIFGSLMNGKY--EFFPGVKHYACVIDLLARA 361
Query: 121 ADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
+++A + +K W + G +GD L F+ ++P AY +
Sbjct: 362 GILQEAMEVMTRMPFEPNKVMWGAFLAG--CRAHGDLELSEFAARKLVELEPGNGAYYVL 419
Query: 172 LS 173
LS
Sbjct: 420 LS 421
>gi|242033621|ref|XP_002464205.1| hypothetical protein SORBIDRAFT_01g014070 [Sorghum bicolor]
gi|241918059|gb|EER91203.1| hypothetical protein SORBIDRAFT_01g014070 [Sorghum bicolor]
Length = 521
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 97/184 (52%), Gaps = 11/184 (5%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D ++ + + G+VD AR FD MPER W+AM+ Y R R EAL LF MQ
Sbjct: 197 DAVACNSAIVALARAGRVDEARAVFDGMPERTVATWSAMVSAYARAARCGEALALFSAMQ 256
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ + +VS+L A+L ALD G W+ YID++ V + AL+DMYC C V+
Sbjct: 257 ADGVEPNANVLVSVLGCCASLGALDQGAWVHAYIDRHGVAMNALVVTALVDMYCKCGSVD 316
Query: 125 KAQK-----------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
A++ SW +M+ GLA+ G +A+ +FS++ + PD V ++ VL+
Sbjct: 317 DARQVFDAARSQGSAKLSSWNSMMQGLAVHGQWREAVALFSELRSYGLSPDNVTFIAVLT 376
Query: 174 ACTH 177
A H
Sbjct: 377 AYGH 380
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 67/162 (41%), Gaps = 9/162 (5%)
Query: 4 KDVISWTAIVSRYINRGQ-VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
KD I+ + V+ G+ V A + P + +W +I R A+ LF +
Sbjct: 63 KDPIAASRAVAFCAGPGRDVSYAERLVRHHPRPNSFMWNTVIRALSDGARPEAAVALFVD 122
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M S + T+ S+L A A L G + K + D + NA I MY CA
Sbjct: 123 MLGSPTPPERRTLPSLLAAYARLGRAGDGAALHGMALKLGLAGDAYVRNATIAMYASCAR 182
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
++A + D + + IV LA +G D+A +F M
Sbjct: 183 ADEALALFGQCPEFDAVACNSAIVALARAGRVDEARAVFDGM 224
>gi|297848728|ref|XP_002892245.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338087|gb|EFH68504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 664
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 106/183 (57%), Gaps = 8/183 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ SW+ ++ Y++ G+++ A+Q F+ MPE++ V WT +I+G+ + + A++ +
Sbjct: 222 MPERNSGSWSTLIKGYVDNGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTY 281
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM + +E+T+ ++L+A + AL G I YI N +K D G +L+DMY C
Sbjct: 282 FEMLEKGLKPNEYTVAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTSLLDMYAKC 341
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+V+ A KD SWT MI G A+ G +A+ F QM+ + KPDEV ++ VL
Sbjct: 342 GEVDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVL 401
Query: 173 SAC 175
+AC
Sbjct: 402 TAC 404
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 41/173 (23%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPER----DYVLWTAMIDGYLRVNRFREALTLFQEMQTS 66
++V Y GQ++ A Q F++ P+R +LW +++GY R + A TLF+ M
Sbjct: 166 SLVDMYAKTGQLNHAFQVFEETPDRIKKESILLWNVLVNGYCRAKDMQMATTLFRSMPER 225
Query: 67 NIMGDEFTIVSILTARANLRALDLGEW---IKTYIDKNKVKNDIFAGNALIDMYCICADV 123
N G W IK Y+D ++ L ++
Sbjct: 226 NS----------------------GSWSTLIKGYVDNGELNR----AKQLFELM------ 253
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+K+ SWTT+I G + +G+ + A+ + +ML +KP+E VLSAC+
Sbjct: 254 --PEKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTVAAVLSACS 304
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 25/166 (15%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T+++ Y G+VD A F M +D + WTAMI G+ RF +A+ F++M S
Sbjct: 332 TSLLDMYAKCGEVDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEK 391
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
DE +++LTA N +DLG + D ++ +A + Y + D+
Sbjct: 392 PDEVVFLAVLTACLNSGEVDLG---LNFFDSMRLD---YAIEPTLKHYVLVVDL------ 439
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
L +G D+A ++ M I PD + + AC
Sbjct: 440 ----------LGRAGKLDEAHELVEYM---PINPDLTTWAALYRAC 472
>gi|225435933|ref|XP_002267829.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14170-like [Vitis vinifera]
Length = 455
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 108/184 (58%), Gaps = 8/184 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
K + +A+V Y+ G+V AR FD+MPERD VLWTAM+ GY + AL++F++
Sbjct: 142 EKSLFVASALVFMYVTFGKVLDARVLFDEMPERDAVLWTAMLAGYAQHEEPMLALSVFRQ 201
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M ++ + D ++S+L A L L G+ + +I + + + GNAL+ Y CA
Sbjct: 202 MVSAGVALDGVVMISLLLACGQLGWLKHGKSVHGWITRRCLALGLNLGNALVYFYVKCAA 261
Query: 123 V--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+ + ++D SW+++I+G +SGN D ALD+F +M A +KP++V ++G LSA
Sbjct: 262 LGYSYNLFDKMPERDVISWSSIILGYGLSGNVDIALDLFDRMRVAGVKPNDVTFLGALSA 321
Query: 175 CTHN 178
CTH
Sbjct: 322 CTHT 325
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 82/180 (45%), Gaps = 9/180 (5%)
Query: 5 DVISWTAIVSRYINRGQVDI-ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+VI + ++ Y G++ + F MP R+ W +I + R + +++ LF +M
Sbjct: 42 NVILSSKLLLMYSQLGKLSPHSLSVFLHMPHRNIYSWNIIIGEFSRSHLPHKSIDLFLQM 101
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ N D FT+ +L A A ++ LG + + ++ +F +AL+ MY V
Sbjct: 102 RHFNQPPDVFTLPLVLRACAASGSVKLGVSVHGLCVEMGMEKSLFVASALVFMYVTFGKV 161
Query: 124 --------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E ++D WT M+ G A AL +F QM+ A + D V + +L AC
Sbjct: 162 LDARVLFDEMPERDAVLWTAMLAGYAQHEEPMLALSVFRQMVSAGVALDGVVMISLLLAC 221
>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 693
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 105/183 (57%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ D + W++++ Y G +D AR FD++ ++D V WT+MID Y + +R+RE +LF E
Sbjct: 252 DSDEVLWSSLMDMYGKCGCIDEARNIFDKIIDKDVVSWTSMIDRYFKSSRWREGFSLFSE 311
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ S +E+T +L A A+L +LG + Y+ + FA ++LIDMY C +
Sbjct: 312 LIGSCERPNEYTFSGVLNACADLTTEELGRQVHGYMTRVGFDPYSFASSSLIDMYTKCGN 371
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+E A + D S T++I G A +G D+AL F +L++ KPD V +V VLSA
Sbjct: 372 IESARHVVDGCPKPDLVSLTSLIGGYAQNGKPDEALKYFDLLLKSGTKPDHVTFVNVLSA 431
Query: 175 CTH 177
CTH
Sbjct: 432 CTH 434
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 103/184 (55%), Gaps = 9/184 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV SW +V+ Y G ++ AR FD+MPERD WTAM+ GY++ ++ EAL L+
Sbjct: 148 MPERDVCSWNVMVNGYAEVGLLEEARNLFDEMPERDSYSWTAMVTGYVKKDQPEEALVLY 207
Query: 61 QEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
MQ N + FT+ S + A A ++ + G+ I +I + + +D ++L+DMY
Sbjct: 208 SLMQRVPNSKPNIFTVSSAVAAAAAIKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGK 267
Query: 120 CADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C +++A+ KD SWT+MI S + +FS+++ + +P+E + GV
Sbjct: 268 CGCIDEARNIFDKIIDKDVVSWTSMIDRYFKSSRWREGFSLFSELIGSCERPNEYTFSGV 327
Query: 172 LSAC 175
L+AC
Sbjct: 328 LNAC 331
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 13/171 (7%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
++++ Y G ++ AR D P+ D V T++I GY + + EAL F + S
Sbjct: 360 SSLIDMYTKCGNIESARHVVDGCPKPDLVSLTSLIGGYAQNGKPDEALKYFDLLLKSGTK 419
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK--- 125
D T V++L+A + ++ G E+ + +K+ + + L+D+ E+
Sbjct: 420 PDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHDLTHTSDHYTCLVDLLARSGRFEQLKS 479
Query: 126 ------AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPD-EVAYV 169
+ KF W +++ G + GN D A + ++ + I+P+ V YV
Sbjct: 480 VLSEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFK--IEPENPVTYV 528
Score = 37.0 bits (84), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 17/131 (12%)
Query: 43 MIDGYLRVNRFREALTLF--QEM--QTSNIMG-----DEFTIVSILTARANLRALDLGEW 93
+++ R NRF EA+ + Q++ + ++G T +++ + RAL+ G+
Sbjct: 49 VVERLCRANRFGEAIDVLCGQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKK 108
Query: 94 IKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKFSWTTMIVGLAISGN 145
+ +I + I N ++ MY C + E ++D SW M+ G A G
Sbjct: 109 VHEHIRTSGFVPGIVIWNRILGMYAKCGSLVDARKVFDEMPERDVCSWNVMVNGYAEVGL 168
Query: 146 GDKALDMFSQM 156
++A ++F +M
Sbjct: 169 LEEARNLFDEM 179
>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 603
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 105/181 (58%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+V +++ Y VD AR FD++ E V + AMI GY R NR EAL+LF+EMQ
Sbjct: 163 NVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQ 222
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ +E T++S+L++ A L +LDLG+WI Y K+ + ALIDM+ C ++
Sbjct: 223 GKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLD 282
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A KD +W+ MIV A G +K++ MF +M +++PDE+ ++G+L+AC+
Sbjct: 283 DAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACS 342
Query: 177 H 177
H
Sbjct: 343 H 343
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 4 KDVISWTAIVSRYIN-------RGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREA 56
K I + V++ IN + AR F+ M E D V++ +M GY R E
Sbjct: 54 KSHIEDVSFVAKLINFCTESPTESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEV 113
Query: 57 LTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116
+LF E+ I+ D +T S+L A A +AL+ G + K + ++++ LI+M
Sbjct: 114 FSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINM 173
Query: 117 YCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
Y C DV+ A + + MI G A ++AL +F +M +KP+E+
Sbjct: 174 YTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITL 233
Query: 169 VGVLSAC 175
+ VLS+C
Sbjct: 234 LSVLSSC 240
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ + G +D A F++M +D W+AMI Y + +++ +F+ M++ N+
Sbjct: 269 TALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQ 328
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126
DE T + +L A ++ ++ G ++ + K + I +++D+ ++E A
Sbjct: 329 PDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDA 386
>gi|255576546|ref|XP_002529164.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531388|gb|EEF33223.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 453
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 109/188 (57%), Gaps = 11/188 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D+ SW +++ +I ++ +AR+ D+MPE++ V WT MI GY++ AL +F
Sbjct: 212 MPERDLPSWNTMITGFIQNKELKLARKLLDEMPEKNVVSWTTMITGYVQEGESEAALNIF 271
Query: 61 QEM-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
EM + +M +E T V++L A ++L L G+ + I K ++ F +ALI+MY
Sbjct: 272 MEMIRDGGVMPNEGTFVNVLGACSDLAGLGEGQQVHQMISKTVYQDMPFVVSALINMYSK 331
Query: 120 CADVEKA----------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
C +++ A Q+D SW M+ A G G +A+++F++M +PD+++YV
Sbjct: 332 CGELDMARKMFDNRTTSQRDLVSWNCMVAAYAHHGCGKEAINLFNEMRALGFEPDDISYV 391
Query: 170 GVLSACTH 177
G+LSAC+H
Sbjct: 392 GLLSACSH 399
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 87/180 (48%), Gaps = 38/180 (21%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DVISWTA+V+ G++D AR+ FD+MPER+ V W AMI GY + R EA LF
Sbjct: 150 MPKRDVISWTAMVAGLARNGRIDEARKIFDKMPERNVVSWNAMITGYAKNMRLVEAFELF 209
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEW---IKTYIDKNKVKNDIFAGNALIDMY 117
+ M DL W I +I ++K L+D
Sbjct: 210 ERMPER----------------------DLPSWNTMITGFIQNKELK----LARKLLD-- 241
Query: 118 CICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGVLSACT 176
E +K+ SWTTMI G G + AL++F +M+R + P+E +V VL AC+
Sbjct: 242 ------EMPEKNVVSWTTMITGYVQEGESEAALNIFMEMIRDGGVMPNEGTFVNVLGACS 295
>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 801
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 97/177 (54%), Gaps = 8/177 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA + Y G V AR FD +D ++W+AMI Y + N EA +F M I
Sbjct: 367 TAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIR 426
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-- 127
+E T+VS+L A +L++G+WI +YIDK +K D+ + +DMY C D++ A
Sbjct: 427 PNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRL 486
Query: 128 ------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+D W MI G A+ G+G+ AL++F +M + P+++ ++G L AC+H+
Sbjct: 487 FAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSHS 543
Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 8/175 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ Y+ + AR+ FD + + + WTAMI Y+ N E + LF +M +
Sbjct: 266 TALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMF 325
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-- 127
+E T++S++ AL+LG+ + + +N + A IDMY C DV A+
Sbjct: 326 PNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSV 385
Query: 128 ------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
KD W+ MI A + D+A D+F M I+P+E V +L C
Sbjct: 386 FDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICA 440
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 10/183 (5%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ DV A++ Y G + +AR FD++ +D V W+ MI Y R EAL L ++
Sbjct: 156 HGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRD 215
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV--KNDIFAGNALIDMYCIC 120
M + E ++SI A L L LG+ + Y+ +N K+ + ALIDMY C
Sbjct: 216 MHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKC 275
Query: 121 ADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ A++ SWT MI N ++ + +F +ML + P+E+ + ++
Sbjct: 276 ENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLV 335
Query: 173 SAC 175
C
Sbjct: 336 KEC 338
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 8/137 (5%)
Query: 43 MIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK 102
+I Y++ N +A ++ M+ ++ D F I S+L A + + LG+ + ++ KN
Sbjct: 95 LITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNG 154
Query: 103 VKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFS 154
D+F NALI MY + A+ KD SW+TMI SG D+ALD+
Sbjct: 155 FHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLR 214
Query: 155 QMLRASIKPDEVAYVGV 171
M +KP E+ + +
Sbjct: 215 DMHVMRVKPSEIGMISI 231
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+I T+ V Y N G +D A + F + +RD +W AMI G+ AL LF+EM+
Sbjct: 463 DMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEME 522
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGE 92
+ ++ T + L A ++ L G+
Sbjct: 523 ALGVTPNDITFIGALHACSHSGLLQEGK 550
>gi|255585042|ref|XP_002533229.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526949|gb|EEF29150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 575
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 64/176 (36%), Positives = 99/176 (56%), Gaps = 8/176 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+ + Y +++ ARQ FD+ E+ W AMI GY + +A++LFQEMQ NI
Sbjct: 357 TALTTVYSRLNEMEAARQLFDESSEKTLASWNAMIAGYTQNGATEKAISLFQEMQMYNIS 416
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
+ T+ SIL+A A L AL LG+WI + + +++ ALIDMY C + +A
Sbjct: 417 PNPVTVTSILSACAQLGALTLGKWIHGLVKFKSFEYNVYVSTALIDMYAKCGSILEARRL 476
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+K++ +W +I G + G G +AL +F +ML I+P V ++ VL AC+H
Sbjct: 477 FDSMPEKNEVTWNAIISGYGLHGLGQEALKLFYEMLNCGIQPTRVTFLSVLYACSH 532
Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 56/181 (30%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ D+ +A+V Y + DIA + FD++PERD +L+ MI G +RV + +++ LF+
Sbjct: 147 SSDLFVGSALVDMYFKLSREDIALKVFDKLPERDTILYNTMISGLVRVCCYEDSIRLFKY 206
Query: 63 MQTSNIMGDEF---TIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
M + N G +F T++++L A A L+ L LG I+ K + I LI +Y
Sbjct: 207 MISGN--GPQFDSTTVLAVLPALAELQELRLGTEIQCLAIKLGFLSHISVVTGLISLYSK 264
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C DV+ A +KD S+ MI GL +G + ++ +F + L + K + + VG+
Sbjct: 265 CGDVDTASILFTDIGRKDLISYNAMISGLTFNGETESSVRLFEEWLDSGEKVNSSSIVGL 324
Query: 172 L 172
+
Sbjct: 325 I 325
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 8/176 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T ++S Y G VD A F + +D + + AMI G ++ LF+E S
Sbjct: 256 TGLISLYSKCGDVDTASILFTDIGRKDLISYNAMISGLTFNGETESSVRLFEEWLDSGEK 315
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
+ +IV ++ L L I + K+ + + AL +Y ++E A
Sbjct: 316 VNSSSIVGLIPVYCPFGYLPLTNCIHGFGVKSGIVSHSSVATALTTVYSRLNEMEAARQL 375
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+K SW MI G +G +KA+ +F +M +I P+ V +LSAC
Sbjct: 376 FDESSEKTLASWNAMIAGYTQNGATEKAISLFQEMQMYNISPNPVTVTSILSACAQ 431
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 9/162 (5%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ T + + N A F +P+ D L+ +I G+ N A++LF ++
Sbjct: 47 DIAVATKLTHKLFNFNATSHASALFFTIPKPDLFLFNVLIKGFSNNNSPLSAISLFTHLR 106
Query: 65 TS-NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
S ++ D FT +++A N +G + + + + +D+F G+AL+DMY +
Sbjct: 107 KSTDLYPDNFTYAFVVSAARNFGDAKIGFSLHGRVIVDGLSSDLFVGSALVDMYFKLSRE 166
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQML 157
+ A ++D + TMI GL + ++ +F M+
Sbjct: 167 DIALKVFDKLPERDTILYNTMISGLVRVCCYEDSIRLFKYMI 208
>gi|357153075|ref|XP_003576330.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g18840-like [Brachypodium distachyon]
Length = 535
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 65/186 (34%), Positives = 105/186 (56%), Gaps = 11/186 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V W A ++R+ G ++ A + F +MP RD V W ++I Y ++ + AL +F
Sbjct: 217 MPERSVSWWNAEITRHARVGDMEAAARVFREMPGRDAVSWNSLIGSYAKLGQCARALKVF 276
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ S + E T+VS+L A + L+LG+ + Y+ V D + GNAL+DMY C
Sbjct: 277 REMQDSGVEPTELTLVSVLGACTEIGELELGKGVHGYLSSKGVLADGYVGNALVDMYAKC 336
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E A+ +D W MIVGL++ G +AL++F+ M ++PD V ++GVL
Sbjct: 337 GSLELARQVFESMSTRDITCWNAMIVGLSVHGYSREALELFNVM---RVEPDHVTFLGVL 393
Query: 173 SACTHN 178
C+H+
Sbjct: 394 IVCSHS 399
Score = 59.7 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 44/166 (26%), Positives = 69/166 (41%), Gaps = 31/166 (18%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+VS Y G++ AR+ FD MP R+ V W A++ + V R A + QEM ++
Sbjct: 165 ALVSMYGKLGRLGDARKVFDGMPARNAVSWNALVAAHGDVGDSRGAERVSQEMPERSV-- 222
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDK 130
W I ++ D+ A + E +D
Sbjct: 223 ---------------------SWWNAEITRHARVGDMEAAARVFR--------EMPGRDA 253
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
SW ++I A G +AL +F +M + ++P E+ V VL ACT
Sbjct: 254 VSWNSLIGSYAKLGQCARALKVFREMQDSGVEPTELTLVSVLGACT 299
>gi|357511423|ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355501015|gb|AES82218.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 607
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 103/185 (55%), Gaps = 9/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ISWT +V+ Y+ QV+ AR FD M ER+ V WTAMI GY++ RF +AL LF
Sbjct: 198 MPQRNIISWTTLVNGYVKNKQVNKARSVFDDMSERNVVSWTAMISGYVQNKRFVDALKLF 257
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M + + FT S+L A A +L +G + I K+ + ND+ +L+DMY C
Sbjct: 258 VLMFKTETRPNHFTFSSVLDACAGSSSLIMGLQLHPCIIKSGIANDVIWLTSLVDMYAKC 317
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
D++ A K+ SW +I G A G +AL+ F +M + PDEV +V VL
Sbjct: 318 GDMDAAFGVFESIRDKNLVSWNAIIGGYASHGLATRALEEFDRM-KVVGTPDEVTFVNVL 376
Query: 173 SACTH 177
SAC H
Sbjct: 377 SACVH 381
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 90/213 (42%), Gaps = 43/213 (20%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+++SW +++ Y+ Q+ FD+MP +D V W M+ G+ R F +M
Sbjct: 39 NIVSWNMVMTAYLQHNQIGPVHDLFDKMPLKDAVSWNIMLSGFQRTRNSEGLYRCFLQMG 98
Query: 65 TSNIMGDEFTIVSILTA-----------RANLRALDLGEWIKTYIDKNKVK--------- 104
+ ++ +++TI ++L A + + A LG ++ ++ + ++
Sbjct: 99 RAGVVPNDYTISTLLRAVISTELDVLVRQVHALAFHLGHYLNVFVGSSLIRAYAGLKEEE 158
Query: 105 -----------NDIFAGNALIDMYCICA---DVEKA-----QKDKFSWTTMIVGLAISGN 145
D+ + NAL+ Y D + A Q++ SWTT++ G +
Sbjct: 159 ALGRAFNDISMKDVTSWNALVSSYMELGKFVDAQTAFDQMPQRNIISWTTLVNGYVKNKQ 218
Query: 146 GDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+KA +F M ++ V++ ++S N
Sbjct: 219 VNKARSVFDDMSERNV----VSWTAMISGYVQN 247
Score = 39.7 bits (91), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 86/215 (40%), Gaps = 41/215 (19%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMP-----ERDYVLWTAM------------ 43
M KD +SW ++S + + +CF QM DY + T +
Sbjct: 66 MPLKDAVSWNIMLSGFQRTRNSEGLYRCFLQMGRAGVVPNDYTISTLLRAVISTELDVLV 125
Query: 44 ---------IDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSI--LTARANLRA--LDL 90
+ YL V + + ++ +G F +S+ +T+ L + ++L
Sbjct: 126 RQVHALAFHLGHYLNVFVGSSLIRAYAGLKEEEALGRAFNDISMKDVTSWNALVSSYMEL 185
Query: 91 GEWI--KTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGL 140
G+++ +T D+ +N I + L++ Y V KA +++ SWT MI G
Sbjct: 186 GKFVDAQTAFDQMPQRN-IISWTTLVNGYVKNKQVNKARSVFDDMSERNVVSWTAMISGY 244
Query: 141 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ AL +F M + +P+ + VL AC
Sbjct: 245 VQNKRFVDALKLFVLMFKTETRPNHFTFSSVLDAC 279
>gi|345505204|gb|AEN99826.1| chlororespiratory reduction 4, partial [Aethionema cordifolium]
Length = 587
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 104/187 (55%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV++W ++ Y G V A+ FDQMP RD V + +M+ GY++ EAL +F
Sbjct: 256 MPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIF 315
Query: 61 QEMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
M+ S++ DE T+V +L+A A L L + YI + G ALIDM+
Sbjct: 316 NNMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMNKYIVEKSFPLGGKLGVALIDMHSK 375
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C +++A K W MI GLAI G+G+ A DM Q+ R SIKPD++ ++GV
Sbjct: 376 CGSIQQAISVFEGIKNKSIDHWNAMIGGLAIHGHGELAFDMLMQIERCSIKPDDITFIGV 435
Query: 172 LSACTHN 178
L+AC+H+
Sbjct: 436 LNACSHS 442
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 17/182 (9%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ ++ Y+ G + ARQ FD+MP+RD V + +MIDGY++ A LF M
Sbjct: 133 DLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIGSARELFDLMP 192
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
M + + S+++ A G I + + + D+ + N+LID Y +E
Sbjct: 193 KE--MKNLISWNSMISGYAQTSD---GVNIASKLFAEMPEKDLISWNSLIDGYVKHGRME 247
Query: 125 KAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A+ +D +W TMI G A G KA +F QM D VAY +++
Sbjct: 248 DAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHR----DVVAYNSMMAGYV 303
Query: 177 HN 178
N
Sbjct: 304 QN 305
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 20/186 (10%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRV-NRFREAL 57
M +D +S+ +++ Y+ G + AR+ FD MP+ ++ + W +MI GY + + A
Sbjct: 160 MPQRDSVSYNSMIDGYVKCGLIGSARELFDLMPKEMKNLISWNSMISGYAQTSDGVNIAS 219
Query: 58 TLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
LF EM +++ I + A DL Y+ + D+ +ID Y
Sbjct: 220 KLFAEMPEKDLISWNSLIDGYVKHGRMEDAKDL-----FYV---MPRRDVVTWATMIDGY 271
Query: 118 CICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAY 168
V KA +D ++ +M+ G + +AL++F+ M + S + PDE
Sbjct: 272 AKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFNNMEKDSHLSPDETTL 331
Query: 169 VGVLSA 174
V VLSA
Sbjct: 332 VIVLSA 337
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 8/131 (6%)
Query: 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIK 95
D LW A+I + + AL F M + + D+F++ +L A + L + G I
Sbjct: 63 DPFLWNAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFVQEGMQIH 122
Query: 96 TYIDKNKVKNDIFAGNALIDMY--CICADVEK------AQKDKFSWTTMIVGLAISGNGD 147
++ K + +D+F N LI +Y C C + Q+D S+ +MI G G
Sbjct: 123 GFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIG 182
Query: 148 KALDMFSQMLR 158
A ++F M +
Sbjct: 183 SARELFDLMPK 193
>gi|224066751|ref|XP_002302197.1| predicted protein [Populus trichocarpa]
gi|222843923|gb|EEE81470.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 110/213 (51%), Gaps = 39/213 (18%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREA------- 56
K+V++WT ++ Y ++G+++ AR F+ MP+R++ +W++MI GY ++ +EA
Sbjct: 85 KNVVTWTVMIDGYASKGEMEAARLLFEDMPQRNFFVWSSMISGYCKIGNVKEARAIFDRV 144
Query: 57 ------------------------LTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGE 92
L F +MQ DE T+V +L+A A L LD+G+
Sbjct: 145 PVRNLVNWNSLICGYSQNGFCEEALDAFGKMQNEGYEPDEVTVVGVLSACAQLSLLDVGK 204
Query: 93 WIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISG 144
+ I +K + F NAL+DMY C D+ A+ K+ W +MI G A+ G
Sbjct: 205 DVHKMICAKGMKLNEFVVNALVDMYAKCGDLTGARLIFERMTNKNNACWNSMISGFAVHG 264
Query: 145 NGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+AL+ F +M ++ KPDE+ ++ VLSAC H
Sbjct: 265 KTKEALEFFGRMEESNEKPDEITFLSVLSACVH 297
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 95/188 (50%), Gaps = 20/188 (10%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V++W A++S Y G + A FD+M R+ V W MIDG+ R A F
Sbjct: 18 MPERNVVTWNAMISGYGKNGDMKSASVLFDKMSTRNAVSWIEMIDGFARSGDMVAARRTF 77
Query: 61 QEM--QTSNIMGDEFTI-VSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
E+ + N++ +T+ + ++ + A L + ++ + + F +++I Y
Sbjct: 78 NEVPFELKNVV--TWTVMIDGYASKGEMEAARL-------LFEDMPQRNFFVWSSMISGY 128
Query: 118 CICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
C +V++A+ ++ +W ++I G + +G ++ALD F +M +PDEV V
Sbjct: 129 CKIGNVKEARAIFDRVPVRNLVNWNSLICGYSQNGFCEEALDAFGKMQNEGYEPDEVTVV 188
Query: 170 GVLSACTH 177
GVLSAC
Sbjct: 189 GVLSACAQ 196
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 55/107 (51%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
A+V Y G + AR F++M ++ W +MI G+ + +EAL F M+ SN
Sbjct: 223 NALVDMYAKCGDLTGARLIFERMTNKNNACWNSMISGFAVHGKTKEALEFFGRMEESNEK 282
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116
DE T +S+L+A + +++G I + +++ + I L+D+
Sbjct: 283 PDEITFLSVLSACVHGGFVEVGLEIFSKMERYGLSASIKHYGCLVDL 329
>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
Length = 1221
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 109/183 (59%), Gaps = 9/183 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
++ SW +++ YI G+++ A++ F +MP RD V W+ MI G+ F E+ + F+E+
Sbjct: 368 RNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYFREL 427
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ + +E ++ +L+A + A + G+ + +++K+ + NALIDMY C +V
Sbjct: 428 LRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMYSRCGNV 487
Query: 124 EKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
A ++ SWT+MI GLA+ G+G++A+ +F++M + + PDE++++ +L A
Sbjct: 488 PMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEISFISLLYA 547
Query: 175 CTH 177
C+H
Sbjct: 548 CSH 550
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 31/169 (18%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T ++ Y G V AR+ FD+MP+ + V W A++ R N A +F +M N
Sbjct: 312 TTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTACFRGNDVSGAREIFDKMLVRN-- 369
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
T +++ A ++A +L + IF+ E +D
Sbjct: 370 ---HTSWNVMLA-GYIKAGEL-----------ECAKRIFS--------------EMPHRD 400
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
SW+TMIVG + +G+ +++ F ++LRA ++P+EV+ GVLSAC+ +
Sbjct: 401 DVSWSTMIVGFSHNGSFNESFSYFRELLRAEMRPNEVSLTGVLSACSQS 449
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 71/169 (42%), Gaps = 26/169 (15%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPE-RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
A++ Y G V +AR F+ M E R V WT+MI G EA+ +F EM S +M
Sbjct: 476 ALIDMYSRCGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVM 535
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
DE + +S+L A ++ + GE Y K K +Y I VE
Sbjct: 536 PDEISFISLLYACSHAGLIKEGE---GYFSKMK------------RVYHIEPAVEH---- 576
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+ M+ SG KA QM I P + + +L AC+ +
Sbjct: 577 ---YGCMVDLYGRSGKLQKAYSFICQM---PIPPTAIVWRTLLGACSSH 619
>gi|296085295|emb|CBI29027.3| unnamed protein product [Vitis vinifera]
Length = 384
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 104/185 (56%), Gaps = 10/185 (5%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
++ +SW A++ Y G +D ARQ F+ MP+RD V W++MIDG ++ + AL +F+ M
Sbjct: 21 RNSVSWNAMLDGYAKCGDLDSARQVFESMPDRDVVSWSSMIDGCVKGGEYGVALAIFERM 80
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ +E T+VS+L A A+L AL+ G + Y+ N ++ + +L+DMY C +
Sbjct: 81 RVVGPKANEVTMVSVLCACAHLGALEQGRTMHQYMVDNTMRFTLVLRTSLMDMYAKCGAI 140
Query: 124 EKA----------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
E+A Q D W T+I GLA G ++L++F +M I PDE+ Y+ + S
Sbjct: 141 EEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLVHESLELFKEMQVLGIVPDEITYLCLFS 200
Query: 174 ACTHN 178
AC H
Sbjct: 201 ACAHG 205
>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
mitochondrial-like [Vitis vinifera]
Length = 632
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 103/188 (54%), Gaps = 11/188 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK + V+SWT I+ I V R FD+MPER+ V WT MI GYL +E+ L
Sbjct: 179 MKGQSVVSWTVILDGVIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALV 238
Query: 61 QEMQTSNIMGDEF-TIVSILTARANLRALDLGEWIKTYIDKNKVKN-DIFAGNALIDMYC 118
+EM M + T+ SILTA + L +G W+ Y K K K +I G A++DMY
Sbjct: 239 REMIFDLEMELNYVTLCSILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYA 298
Query: 119 ICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C + A Q++ SW M+ GLA+ G G ALD+F QM + + KPD+V +
Sbjct: 299 KCGRIHIAFKFFKKMPQRNVVSWNAMLSGLAMHGLGRAALDIFPQMFKEA-KPDDVTFTS 357
Query: 171 VLSACTHN 178
VLSAC+H+
Sbjct: 358 VLSACSHS 365
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 12/111 (10%)
Query: 78 ILTARANLRALDLGEWIKTYIDKNKVKN--DIFAGNALIDMY--CICA--------DVEK 125
+L + A +LD+GE + I + + F NAL+ Y C CA ++
Sbjct: 19 LLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDEIPH 78
Query: 126 AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+ KD WTT++ D+AL +F +M R +KPDEV V + C
Sbjct: 79 SHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCA 129
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 10/140 (7%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI 68
A++ Y + G AR+ FD++P +D V WT ++ ++R N EAL +F EM+ +
Sbjct: 55 ALLQFYASCGCAWQARKVFDEIPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGV 114
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
DE T+V + A L + +G + K + A NA++DMY + +A++
Sbjct: 115 KPDEVTLVCLFGGCARLGDVVVGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARR 174
Query: 129 DKF--------SWTTMIVGL 140
+ SWT ++ G+
Sbjct: 175 VFYEMKGQSVVSWTVILDGV 194
>gi|414887968|tpg|DAA63982.1| TPA: hypothetical protein ZEAMMB73_972364 [Zea mays]
Length = 700
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 66/182 (36%), Positives = 104/182 (57%), Gaps = 9/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + +A+V Y G++ AR+ FD + +D V W AMI GY + EA+ LF M+
Sbjct: 253 DSLIGSALVGMYEKCGEMAEARRVFDGIRHKDVVAWNAMITGYAQNGMSNEAIALFHSMR 312
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ + D+ T+V +L++ A + AL LG + TY + + N+++ G AL+DMY C D+E
Sbjct: 313 EAGLCPDKITLVGVLSSCAAVGALKLGVELDTYAMRRGLYNNVYVGTALVDMYAKCGDLE 372
Query: 125 KAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVGVLSAC 175
KA K++ SW +I GLA +G G A+ F M ++PD++ ++GVLSAC
Sbjct: 373 KATHVFGKMPFKNEASWNALICGLAFNGRGYDAIQQFELMRDEKGLQPDDITFIGVLSAC 432
Query: 176 TH 177
H
Sbjct: 433 VH 434
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 50/160 (31%), Positives = 83/160 (51%), Gaps = 9/160 (5%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG-DEFTIVSILTARA 83
AR+ FD + RD V W +M+ Y R E + + M T + + T+ +LTA
Sbjct: 171 ARRVFDGISHRDVVSWNSMVKAYERAGMVAEVEGMLRSMVTEGAVAPNGVTLAVVLTACR 230
Query: 84 NLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTT 135
+ L LG W++ ++ ++ D G+AL+ MY C ++ +A+ KD +W
Sbjct: 231 DAGNLVLGRWVEEWVRSAGMEVDSLIGSALVGMYEKCGEMAEARRVFDGIRHKDVVAWNA 290
Query: 136 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
MI G A +G ++A+ +F M A + PD++ VGVLS+C
Sbjct: 291 MITGYAQNGMSNEAIALFHSMREAGLCPDKITLVGVLSSC 330
>gi|326527617|dbj|BAK08083.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 642
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 109/182 (59%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
++VI TA++ Y+ +D AR+ FD+M +RD V W+ MI GY + R E+L LF+ M
Sbjct: 283 QNVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERM 342
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ ++ +E T+V +++A A L + +L E I Y + ++ + G+ALIDMY C V
Sbjct: 343 KATDCRPNEVTLVGVISACAQLGSDELVEQIGNYAENQRLPLTSYLGSALIDMYTRCGHV 402
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+A QK +W +MI GLA++G + A+ ++ +M ++P+E+ +V +L+AC
Sbjct: 403 GRARSVFSRMEQKGVITWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEITFVALLAAC 462
Query: 176 TH 177
TH
Sbjct: 463 TH 464
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 96/183 (52%), Gaps = 9/183 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD I +++ Y G VD AR+ FD M R W +MI Y FREALTLF
Sbjct: 180 MPVKDPIPINCLITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALTLF 239
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M + + TI S+ + A LD G+ ++ I ++ ++N + AL++MY C
Sbjct: 240 DRMLSEGARPNAITITSVFSICAKSGDLDTGKRVRDLIGEDDLQN-VIVHTALMEMYVKC 298
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ A Q+D +W+TMI G A +G ++L++F +M +P+EV VGV+
Sbjct: 299 RAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVI 358
Query: 173 SAC 175
SAC
Sbjct: 359 SAC 361
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 52/142 (36%), Gaps = 8/142 (5%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
AR FD +P L + + R + + L F M + + + A
Sbjct: 72 ARNLFDAVPRPAPALCSTFLSSLSRASSHHDLLQTFSSMHRKGAYVPSGCVPLVFKSCAL 131
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTM 136
+ G + + + D+F AL+D Y D+E A KD +
Sbjct: 132 TASSCQGRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSVFDEMPVKDPIPINCL 191
Query: 137 IVGLAISGNGDKALDMFSQMLR 158
I G + +G+ DKA +F M R
Sbjct: 192 ITGYSKAGDVDKARRLFDGMER 213
>gi|225465641|ref|XP_002270476.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Vitis vinifera]
Length = 539
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 104/185 (56%), Gaps = 10/185 (5%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
++ +SW A++ Y G +D ARQ F+ MP+RD V W++MIDG ++ + AL +F+ M
Sbjct: 176 RNSVSWNAMLDGYAKCGDLDSARQVFESMPDRDVVSWSSMIDGCVKGGEYGVALAIFERM 235
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ +E T+VS+L A A+L AL+ G + Y+ N ++ + +L+DMY C +
Sbjct: 236 RVVGPKANEVTMVSVLCACAHLGALEQGRTMHQYMVDNTMRFTLVLRTSLMDMYAKCGAI 295
Query: 124 EKA----------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
E+A Q D W T+I GLA G ++L++F +M I PDE+ Y+ + S
Sbjct: 296 EEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLVHESLELFKEMQVLGIVPDEITYLCLFS 355
Query: 174 ACTHN 178
AC H
Sbjct: 356 ACAHG 360
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 83/211 (39%), Gaps = 43/211 (20%)
Query: 6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT 65
++S++AI S G +D + + F Q+P W ++I G+ + ++++F +M
Sbjct: 50 LLSFSAISSW----GDIDHSYRIFLQIPSPTISNWNSIIRGFSKGKNPNPSVSVFVKMLR 105
Query: 66 SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK 125
+ D T I A A L L L + I K + D F N+LI MY C D+
Sbjct: 106 FGVCPDHLTYPFIAKAVARLSELRLALAVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGS 165
Query: 126 AQK---------------------------------------DKFSWTTMIVGLAISGNG 146
A+K D SW++MI G G
Sbjct: 166 ARKVFDEMLIRNSVSWNAMLDGYAKCGDLDSARQVFESMPDRDVVSWSSMIDGCVKGGEY 225
Query: 147 DKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
AL +F +M K +EV V VL AC H
Sbjct: 226 GVALAIFERMRVVGPKANEVTMVSVLCACAH 256
>gi|356574121|ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Glycine max]
Length = 548
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 109/188 (57%), Gaps = 10/188 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
++ K+V+SW +++ Y G++ +A++ F+ M E+D W+++IDGY++ + EA+ +F
Sbjct: 175 IQQKNVVSWNSMLDGYAKCGEMVMAQKAFESMSEKDVRSWSSLIDGYVKAGEYSEAMAIF 234
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++MQ++ +E T+VS+ A A++ AL+ G I YI N + + +L+DMY C
Sbjct: 235 EKMQSAGPKANEVTMVSVSCACAHMGALEKGRMIYKYIVDNGLPLTLVLQTSLVDMYAKC 294
Query: 121 ADVE----------KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
+E K+Q D W +I GLA G +++L +F +M I PDEV Y+
Sbjct: 295 GAIEEALLIFRRVSKSQTDVLIWNAVIGGLATHGLVEESLKLFKEMQIVGICPDEVTYLC 354
Query: 171 VLSACTHN 178
+L+AC H
Sbjct: 355 LLAACAHG 362
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 83/210 (39%), Gaps = 39/210 (18%)
Query: 7 ISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTS 66
IS S N G ++ + + F Q+ W +I GY ++L++F +M
Sbjct: 49 ISKILCFSALSNSGDINYSYRVFSQLSSPTIFSWNTIIRGYSNSKNPIQSLSIFLKMLRL 108
Query: 67 NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD---- 122
+ D T ++ A A L + G + +I K ++D F N+LI MY C +
Sbjct: 109 GVAPDYLTYPFLVKASARLLNQETGVSVHAHIIKTGHESDRFIQNSLIHMYAACGNSMWA 168
Query: 123 ------------------------------VEKA-----QKDKFSWTTMIVGLAISGNGD 147
+KA +KD SW+++I G +G
Sbjct: 169 QKVFDSIQQKNVVSWNSMLDGYAKCGEMVMAQKAFESMSEKDVRSWSSLIDGYVKAGEYS 228
Query: 148 KALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+A+ +F +M A K +EV V V AC H
Sbjct: 229 EAMAIFEKMQSAGPKANEVTMVSVSCACAH 258
>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Glycine max]
Length = 727
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 103/181 (56%), Gaps = 11/181 (6%)
Query: 6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT 65
+IS TA Y G V +A+ FDQM + ++W AMI GY + EA+ LF M +
Sbjct: 293 LISLTAF---YAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMIS 349
Query: 66 SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK 125
NI D T+ S + A A + +L+L +W+ Y+ K+ +DIF +LIDMY C VE
Sbjct: 350 RNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEF 409
Query: 126 AQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
A+ KD W+ MI+G + G G +A++++ M +A + P++V ++G+L+AC H
Sbjct: 410 ARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNH 469
Query: 178 N 178
+
Sbjct: 470 S 470
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 87/175 (49%), Gaps = 8/175 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T +V+ N GQ+ AR+ FD+ D +W A+I Y R N +R+ + +++ M+ + +
Sbjct: 92 TKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVH 151
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
D FT +L A L L I I K +D+F N L+ +Y C + A
Sbjct: 152 PDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVV 211
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+ SWT++I G A +G +AL MFSQM +KPD +A V +L A T
Sbjct: 212 FDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYT 266
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 86/170 (50%), Gaps = 8/170 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV +V+ Y G + +A+ FD + R V WT++I GY + + EAL +F +M+
Sbjct: 188 DVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMR 247
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ + D +VSIL A ++ L+ G I ++ K ++++ +L Y C V
Sbjct: 248 NNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVT 307
Query: 125 KAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 166
A+ + W MI G A +G+ ++A+++F M+ +IKPD V
Sbjct: 308 VAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSV 357
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ T+++ Y G V+ AR+ FD+ ++D V+W+AMI GY + EA+ L+ M+
Sbjct: 390 DIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMK 449
Query: 65 TSNIMGDEFTIVSILTA 81
+ + ++ T + +LTA
Sbjct: 450 QAGVFPNDVTFIGLLTA 466
>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
[Vitis vinifera]
Length = 799
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 99/185 (53%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD++SW AI+S Y+N G++D A+ F++MPER+ + WT MI G + E+L LF
Sbjct: 356 MPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLF 415
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M++ ++ + A A L AL G + + + + + AGNALI MY C
Sbjct: 416 NRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKC 475
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VE A D SW MI L G+G +AL++F ML+ I PD + ++ VL
Sbjct: 476 GVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVL 535
Query: 173 SACTH 177
S C+H
Sbjct: 536 STCSH 540
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 103/219 (47%), Gaps = 43/219 (19%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D +SWT +++ Y+ G++D ARQ D M E+ V W AMI GY+ F EAL +F
Sbjct: 220 MTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMF 279
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKN----DIFAGNALIDM 116
++M I DEFT S+L+A AN G+ + YI + + + + NAL +
Sbjct: 280 RKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATL 339
Query: 117 YCICADVEKA---------------------------------------QKDKFSWTTMI 137
Y C V++A +++ +WT MI
Sbjct: 340 YWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMI 399
Query: 138 VGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
GLA +G G+++L +F++M +P + A+ G + AC
Sbjct: 400 SGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACA 438
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 94/228 (41%), Gaps = 53/228 (23%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRVNRFREALT 58
++ D+++ T +++ + + G ++AR+ F P RD V + AMI GY N A+
Sbjct: 76 IRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIE 135
Query: 59 LFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAG--NALIDM 116
LF+++ + D FT S+L A A L D + + + K + NAL+ +
Sbjct: 136 LFRDLLRNGFRPDNFTFTSVLGALA-LIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSV 194
Query: 117 YCICADV-----------------EKAQKDKFSWTTMIVGLAISGNGD------------ 147
+ CA E ++D+ SWTTMI G +G D
Sbjct: 195 FVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEK 254
Query: 148 -------------------KALDMFSQMLRASIKPDEVAYVGVLSACT 176
+AL+MF +M I+ DE Y VLSAC
Sbjct: 255 LVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACA 302
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 16/150 (10%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+++ Y G V+ A F MP D V W AMI + +AL LF+ M +I+
Sbjct: 467 ALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILP 526
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGN----ALIDMYCICADVEKA 126
D T +++L+ ++ ++ G Y I G +ID+ C +A
Sbjct: 527 DRITFLTVLSTCSHAGLVEEGH---RYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEA 583
Query: 127 ---------QKDKFSWTTMIVGLAISGNGD 147
+ W ++ G I GN D
Sbjct: 584 KDMIETMPVEPGPPIWEALLAGCRIHGNMD 613
>gi|345505216|gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
Length = 617
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 105/191 (54%), Gaps = 17/191 (8%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV++W ++ Y G V A+ FDQMP RD V + +M+ GY++ EAL +F
Sbjct: 282 MPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMMAGYVQNKYHMEALEIF 341
Query: 61 QEMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGN----ALID 115
+M+ S++ DE T+V +L+A A L L + YI V+ F G ALID
Sbjct: 342 SDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYI----VEKQFFLGGKLGVALID 397
Query: 116 MYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 167
MY C ++ A K W MI GLAI G G+ A DM Q+ R SIKPD++
Sbjct: 398 MYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDIT 457
Query: 168 YVGVLSACTHN 178
+VGVL+AC+H+
Sbjct: 458 FVGVLNACSHS 468
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 77/173 (44%), Gaps = 33/173 (19%)
Query: 4 KDVISWTAIVSRYINRGQ-VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
K++ISW +I+S Y VDIA F +MPE+D + W +MIDGY++ R +A LF
Sbjct: 222 KNLISWNSIISGYAQTSDGVDIASNLFAEMPEKDLISWNSMIDGYVKHGRIEDAKDLFDA 281
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M +++ W T ID + L D
Sbjct: 282 MPRRDVV----------------------TW-ATMIDGYAKLGFVHQAKTLFD------- 311
Query: 123 VEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSA 174
+ +D S+ +M+ G + +AL++FS M + S + PDE V VLSA
Sbjct: 312 -QMPHRDVVSYNSMMAGYVQNKYHMEALEIFSDMEKESHLSPDETTLVIVLSA 363
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIK 95
D LW A+I + ++AL LF M + + D+F++ +L A + L + G I
Sbjct: 89 DPFLWNAVIKSHSHGKDPKQALLLFCLMLENGVSVDKFSMSLVLKACSRLGFVKGGLQIH 148
Query: 96 TYIDKNKVKNDIFAGNALIDMY--CICADVEK------AQKDKFSWTTMIVGLAISGNGD 147
+ K + +D+F N LI +Y C C + Q+D S+ +MI G G +
Sbjct: 149 GILRKTGLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSFNSMIDGYVKRGLIE 208
Query: 148 KALDMFSQMLR 158
A ++F M R
Sbjct: 209 SARELFDLMPR 219
>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 641
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 70/182 (38%), Positives = 96/182 (52%), Gaps = 9/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM- 63
D + W+A+ Y G+VD AR+ FD+MP RD V WTAM++ Y R E LF M
Sbjct: 201 DAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHML 260
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+T + +EFT +L A A G + + K+ + FA +AL+ MY C D+
Sbjct: 261 RTRGVRPNEFTYAGVLRACAQFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDM 320
Query: 124 --------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
A+ D SWT +I G A +G ++AL F LR+ IKPD V +VGVLSAC
Sbjct: 321 GSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSAC 380
Query: 176 TH 177
H
Sbjct: 381 AH 382
Score = 85.9 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 55/168 (32%), Positives = 83/168 (49%), Gaps = 15/168 (8%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT---SNIMGDEFTIVSILTA 81
AR+ FD+MP+RD+ W+A++ GY R + AL L++ MQ ++ +EFT S L A
Sbjct: 114 ARELFDRMPQRDHFAWSALVSGYTRHGQPEAALALYRRMQEEPGNDGADNEFTASSALAA 173
Query: 82 RANLRALDLGEWIKTYIDKNKVK---NDIFAGNALIDMYCICADVEKAQ--------KDK 130
A R G + ++ + + D +AL DMY C V+ A+ +D
Sbjct: 174 AAAARCGRAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDA 233
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVAYVGVLSACTH 177
SWT M+ G G + +F MLR ++P+E Y GVL AC
Sbjct: 234 VSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQ 281
Score = 52.4 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 10/146 (6%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+A++ Y G + A + F+ M + D V WTA+I GY + + EAL F S I
Sbjct: 308 SALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIK 367
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
D T V +L+A A+ +D G E + ++ +++ +ID+ E+A+K
Sbjct: 368 PDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFERAEK 427
Query: 129 ---------DKFSWTTMIVGLAISGN 145
+KF W +++ G I N
Sbjct: 428 MIGNMAVKPNKFLWASLLGGCRIHKN 453
>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 722
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 113/187 (60%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ TA+VS Y G++D A+ FDQ ++D V WT MI Y+ + +EAL +F
Sbjct: 273 MSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVF 332
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EM S I D ++ S+++A ANL LD +W+ + I N +++++ NALI+MY C
Sbjct: 333 EEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKC 392
Query: 121 ADVEKAQKDKF---------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
++ A +D F SW++MI L++ G AL +F++M + +++P+EV +VGV
Sbjct: 393 GGLD-ATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGV 451
Query: 172 LSACTHN 178
L C+H+
Sbjct: 452 LYGCSHS 458
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 91/211 (43%), Gaps = 39/211 (18%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D T + Y + G+++ AR FD+M RD V W MI+ Y R EA LF+EM+
Sbjct: 145 DPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMK 204
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKND------------------ 106
SN+M DE + +I++A + I ++ +N V+ D
Sbjct: 205 DSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMD 264
Query: 107 -------------IFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGN 145
+F A++ Y C ++ AQ KD WTTMI S
Sbjct: 265 MAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDY 324
Query: 146 GDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+AL +F +M + IKPD V+ V+SAC
Sbjct: 325 PQEALRVFEEMCCSGIKPDVVSMFSVISACA 355
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 69/160 (43%), Gaps = 9/160 (5%)
Query: 25 ARQCFDQMP-ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARA 83
A F +P + +++ + R + R + +Q ++ D+F+ + IL A +
Sbjct: 63 ALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVS 122
Query: 84 NLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKFSWTT 135
+ AL G + K D F +DMY C + E + +D +W T
Sbjct: 123 KVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNT 182
Query: 136 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
MI G D+A +F +M +++ PDE+ ++SAC
Sbjct: 183 MIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSAC 222
>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 705
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 97/176 (55%), Gaps = 8/176 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
A+V Y +++ AR FD+MPERD V WT MI GY E+L LF +M+ ++
Sbjct: 271 AALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVV 330
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
D+ +V+++ A A L A+ I YI + K + D+ G A+IDM+ C VE A
Sbjct: 331 PDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREI 390
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+K+ SW+ MI G G KALD+F MLR+ I P+++ V +L AC+H
Sbjct: 391 FDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSH 446
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 96/175 (54%), Gaps = 8/175 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
A+V Y+ +++ AR FD+M ERD V WT MI GY + E+L LF++M+ ++
Sbjct: 69 AALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVV 128
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
D+ +V+++ A A L A+ I YI + K + D+ G A+IDMY C VE A
Sbjct: 129 PDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREI 188
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+K+ SW+ MI G G KALD+F ML + + PD++ +L AC+
Sbjct: 189 FDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACS 243
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 104/180 (57%), Gaps = 8/180 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DVI TA++ Y G V+ AR+ FD+M E++ + W+AMI Y + R+AL LF+ M
Sbjct: 165 DVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMML 224
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+S ++ D+ T+ S+L A ++L+ L +G I + K + D F AL+DMY C ++E
Sbjct: 225 SSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIE 284
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A ++D +WT MI G A GN +++L +F +M + PD+VA V V+ AC
Sbjct: 285 DARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACA 344
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 71/142 (50%), Gaps = 8/142 (5%)
Query: 43 MIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK 102
M+ G+ +V + F+E+ D +T+ ++ A +L+ L +G I + K
Sbjct: 1 MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60
Query: 103 VKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFS 154
+ D F AL+DMY C ++E A ++D +WT MI G A G +++L +F
Sbjct: 61 LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120
Query: 155 QMLRASIKPDEVAYVGVLSACT 176
+M + PD+VA V V+ AC
Sbjct: 121 KMREEGVVPDKVAMVTVVFACA 142
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 89/175 (50%), Gaps = 26/175 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DVI TA++ + G V+ AR+ FD+M E++ + W+AMI Y + R+AL LF M
Sbjct: 367 DVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMML 426
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
S I+ ++ T+VS+L A ++ ++ E ++ + + + + Y + ADV+
Sbjct: 427 RSGILPNKITLVSLLYACSHAGLVE--EGLRFF-------------SLMWEDYSVRADVK 471
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC-THN 178
+T ++ L +G D+AL + M +++ DE + L AC TH
Sbjct: 472 -------HYTCVVDLLGRAGRLDEALKLIESM---TVEKDEGLWGAFLGACRTHK 516
>gi|356505262|ref|XP_003521411.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Glycine max]
Length = 566
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 115/187 (61%), Gaps = 13/187 (6%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+S+T ++ Y G + AR FD E+D V W+A+I GY++ +AL +F
Sbjct: 251 MPEKNVVSFTTMIDGYAKAGDMAAARFLFDCSLEKDVVAWSALISGYVQNGLPNQALRVF 310
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV---KNDIFAGNALIDMY 117
EM+ N+ DEF +VS+++A A L L+L +W+ +Y+ K + ++ + A AL+DM
Sbjct: 311 LEMELMNVKPDEFILVSLMSASAQLGHLELAQWVDSYVSKICIDLQQDHVIA--ALLDMN 368
Query: 118 CICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
C ++E+A ++D + +MI GL+I G G++A+++F++ML + PDEVA+
Sbjct: 369 AKCGNMERALKLFDEKPRRDVVLYCSMIQGLSIHGRGEEAVNLFNRMLMEGLTPDEVAFT 428
Query: 170 GVLSACT 176
+L+AC+
Sbjct: 429 VILTACS 435
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 84/174 (48%), Gaps = 31/174 (17%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++V+SWTA++ Y+ G V AR+ FD+MP R+ W +M+ G++++ A +F
Sbjct: 189 MSDRNVVSWTAMLVGYVAVGDVVEARKLFDEMPHRNVASWNSMLQGFVKMGDLSGARGVF 248
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M N++ FT T ID D+ A L D C
Sbjct: 249 DAMPEKNVV--SFT---------------------TMIDGYAKAGDMAAARFLFD----C 281
Query: 121 ADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+ +KD +W+ +I G +G ++AL +F +M ++KPDE V ++SA
Sbjct: 282 S----LEKDVVAWSALISGYVQNGLPNQALRVFLEMELMNVKPDEFILVSLMSA 331
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 13/158 (8%)
Query: 12 IVSRYINRGQ-----VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTS 66
+V +I+R + A F ++ VLW +I + + N F L+ F M+
Sbjct: 63 LVFLFISRAHTLLSTLSYASSVFHRVLAPSTVLWNTLIKSHCQKNLFSHTLSAFARMKAH 122
Query: 67 NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126
+ D FT S++ A + G+ + + V D++ G +LIDMY C ++ A
Sbjct: 123 GALPDSFTYPSVIKACSGTCKAREGKSLHGSAFRCGVDQDLYVGTSLIDMYGKCGEIADA 182
Query: 127 QK--------DKFSWTTMIVGLAISGNGDKALDMFSQM 156
+K + SWT M+VG G+ +A +F +M
Sbjct: 183 RKVFDGMSDRNVVSWTAMLVGYVAVGDVVEARKLFDEM 220
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G ++ A + FD+ P RD VL+ +MI G R EA+ LF M + DE IL
Sbjct: 372 GNMERALKLFDEKPRRDVVLYCSMIQGLSIHGRGEEAVNLFNRMLMEGLTPDEVAFTVIL 431
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
TA + +D G + Y K K I + L D Y D+
Sbjct: 432 TACSRAGLVDEG---RNYFQSMKQKYCI---SPLPDHYACMVDL 469
>gi|218192399|gb|EEC74826.1| hypothetical protein OsI_10663 [Oryza sativa Indica Group]
Length = 703
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 70/182 (38%), Positives = 96/182 (52%), Gaps = 9/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM- 63
D + W+A+ Y G+VD AR+ FD+MP RD V WTAM++ Y R E LF M
Sbjct: 201 DAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHML 260
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+T + +EFT +L A A G + + K+ + FA +AL+ MY C D+
Sbjct: 261 RTRGVRPNEFTYAGVLRACAEFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDM 320
Query: 124 --------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
A+ D SWT +I G A +G ++AL F LR+ IKPD V +VGVLSAC
Sbjct: 321 GSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSAC 380
Query: 176 TH 177
H
Sbjct: 381 AH 382
Score = 85.5 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 55/166 (33%), Positives = 83/166 (50%), Gaps = 15/166 (9%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT---SNIMGDEFTIVSILTA 81
AR+ FD+MP+RD+ W+A++ GY R + AL L++ MQ ++ +EFT S L A
Sbjct: 114 ARELFDRMPQRDHFAWSALVSGYARHGQPEAALALYRRMQEEPGNDGADNEFTASSALAA 173
Query: 82 RANLRALDLGEWIKTYIDKNKVK---NDIFAGNALIDMYCICADVEKAQ--------KDK 130
A R G + ++ + + D +AL DMY C V+ A+ +D
Sbjct: 174 AAAARCGRAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDA 233
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVAYVGVLSAC 175
SWT M+ G G + +F MLR ++P+E Y GVL AC
Sbjct: 234 VSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRAC 279
Score = 52.4 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 10/146 (6%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+A++ Y G + A + F+ M + D V WTA+I GY + + EAL F S I
Sbjct: 308 SALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIK 367
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
D T V +L+A A+ +D G E + ++ +++ +ID+ E+A+K
Sbjct: 368 PDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFERAEK 427
Query: 129 ---------DKFSWTTMIVGLAISGN 145
+KF W +++ G I N
Sbjct: 428 MIGNMAVKPNKFLWASLLGGCRIHKN 453
>gi|326507322|dbj|BAJ95738.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 593
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 109/182 (59%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
++VI TA++ Y+ +D AR+ FD+M +RD V W+ MI GY + R E+L LF+ M
Sbjct: 234 QNVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERM 293
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ ++ +E T+V +++A A L + +L E I Y + ++ + G+ALIDMY C V
Sbjct: 294 KATDCRPNEVTLVGVISACAQLGSDELVEQIGNYAENQRLPLTSYLGSALIDMYTRCGHV 353
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+A QK +W +MI GLA++G + A+ ++ +M ++P+E+ +V +L+AC
Sbjct: 354 GRARSVFSRMEQKGVITWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEITFVALLAAC 413
Query: 176 TH 177
TH
Sbjct: 414 TH 415
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 95/185 (51%), Gaps = 9/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD I +++ Y G VD AR+ FD M R W +MI Y FREAL LF
Sbjct: 131 MPVKDPIPINCLITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALALF 190
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M + + TI S+ + A LD G+ ++ I ++ ++N + AL++MY C
Sbjct: 191 DRMLSEGARPNAITITSVFSICAKSGDLDTGKRVRDLIGEDDLQN-VIVHTALMEMYVKC 249
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ A Q+D +W+TMI G A +G ++L++F +M +P+EV VGV+
Sbjct: 250 RAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVI 309
Query: 173 SACTH 177
SAC
Sbjct: 310 SACAQ 314
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 52/142 (36%), Gaps = 8/142 (5%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
AR FD +P L + + R + + L F M + + + A
Sbjct: 23 ARNLFDAVPRPAPALCSTFLSSLSRASSHHDLLQTFSSMHRKGAYVPSGCVPLVFKSCAL 82
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTM 136
+ G + + + D+F AL+D Y D+E A KD +
Sbjct: 83 TASSCQGRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSAFDEMPVKDPIPINCL 142
Query: 137 IVGLAISGNGDKALDMFSQMLR 158
I G + +G+ DKA +F M R
Sbjct: 143 ITGYSKAGDVDKARRLFDGMER 164
>gi|414871822|tpg|DAA50379.1| TPA: hypothetical protein ZEAMMB73_401482 [Zea mays]
Length = 522
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 99/185 (53%), Gaps = 11/185 (5%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV++ +++ G+VD AR FD MPER W+AM+ Y R R EAL LF MQ
Sbjct: 198 DVVACNSVIVALARAGRVDEARSVFDAMPERTVATWSAMVSAYARAARCSEALALFSAMQ 257
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ + +VS+L A+L AL G W+ YID++ V + AL+DMYC C V+
Sbjct: 258 ADGMEPNANVLVSVLGCCASLGALVQGAWVHEYIDRHGVAMNALVVTALVDMYCKCGSVD 317
Query: 125 KAQK-----------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
A++ SW +M+ GLA+ G +A+ +FS++ + PD V ++ VL+
Sbjct: 318 DARQVFDAARSQGLAKLSSWNSMMQGLAVHGQWREAVALFSELKSYGLSPDNVTFIAVLT 377
Query: 174 ACTHN 178
A H+
Sbjct: 378 AYGHS 382
>gi|345505208|gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]
Length = 615
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/187 (38%), Positives = 105/187 (56%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV++W +V Y G V A+ FDQMP+RD V + +M+ GY++ EA+ +F
Sbjct: 280 MPRRDVVTWATMVDGYAKLGFVHQAKSLFDQMPQRDVVAYNSMMAGYVQNRYHMEAIDIF 339
Query: 61 QEMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+M+ S++ DE T+V +L+A A L L + Y + K G ALIDMY
Sbjct: 340 NDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYTVEKKFLLGGKLGVALIDMYSK 399
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C +++A K W MI GLAI G G+ A DM Q+ R SIKPD++ +VGV
Sbjct: 400 CGSIQQAMGVFERIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGV 459
Query: 172 LSACTHN 178
L+AC+H+
Sbjct: 460 LNACSHS 466
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 83/175 (47%), Gaps = 33/175 (18%)
Query: 2 KNKDVISWTAIVSRYINRGQ-VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ K++ISW ++++ Y R VDIA FD+MPE+D + W ++IDGY++ R +A LF
Sbjct: 218 EKKNLISWNSMINGYAQRADGVDIASNLFDEMPEKDLISWNSLIDGYVKHGRIEDAKDLF 277
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M +++ W T +D + +L D
Sbjct: 278 DKMPRRDVV----------------------TW-ATMVDGYAKLGFVHQAKSLFD----- 309
Query: 121 ADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSA 174
+ Q+D ++ +M+ G + +A+D+F+ M + S + PDE V VLSA
Sbjct: 310 ---QMPQRDVVAYNSMMAGYVQNRYHMEAIDIFNDMEKESHLSPDETTLVIVLSA 361
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 21/184 (11%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ ++ Y+ G + ARQ FD+M +RD V + +MIDGY++ A LF M
Sbjct: 157 DLFLQNCLIGLYLKCGCLGFARQVFDRMSQRDSVSYNSMIDGYVKCGLIESARELFDLMP 216
Query: 65 TS--NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ N++ ++++ RA+ G I + + + D+ + N+LID Y
Sbjct: 217 SEKKNLISWN-SMINGYAQRAD------GVDIASNLFDEMPEKDLISWNSLIDGYVKHGR 269
Query: 123 VEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+E A+ +D +W TM+ G A G +A +F QM + D VAY +++
Sbjct: 270 IEDAKDLFDKMPRRDVVTWATMVDGYAKLGFVHQAKSLFDQMPQR----DVVAYNSMMAG 325
Query: 175 CTHN 178
N
Sbjct: 326 YVQN 329
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 8/129 (6%)
Query: 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIK 95
D LW A+I + R+AL LF M + + D+F++ +L A + L + G
Sbjct: 87 DPFLWNAVIKSHSHGVEPRKALLLFFLMLKNGVSVDKFSLSLVLKACSRLGFVKEGMQXH 146
Query: 96 TYIDKNKVKNDIFAGNALIDMY--CICADVEK------AQKDKFSWTTMIVGLAISGNGD 147
++ K + +D+F N LI +Y C C + +Q+D S+ +MI G G +
Sbjct: 147 GFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMSQRDSVSYNSMIDGYVKCGLIE 206
Query: 148 KALDMFSQM 156
A ++F M
Sbjct: 207 SARELFDLM 215
>gi|255552151|ref|XP_002517120.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543755|gb|EEF45283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 477
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 105/176 (59%), Gaps = 8/176 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++++ T +VS Y+ G+++ AR F+QM E+D + W+ MI GY ++ +EAL LF
Sbjct: 286 MSSRNLVVSTTMVSGYLKVGRIEDARLIFNQMDEKDLICWSIMISGYAESDQPQEALHLF 345
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EMQ I DE T++S+++A A+L LD + I ++DKN + NALIDMY C
Sbjct: 346 NEMQFLGIEPDEVTMLSVISACAHLGVLDQAKRIHMFVDKNGFGKALSVNNALIDMYAKC 405
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
+E A+ ++ SWT+MI AI G+ + AL+ F QM +++P+ V +
Sbjct: 406 GCLEAARAVFEKMQIRNVISWTSMINAFAIHGDANSALNYFHQMKEENVEPNAVTF 461
Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 100/213 (46%), Gaps = 39/213 (18%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD T ++ Y+ G++ AR FD+M RD V W+ MI+GY + F +AL LF+EM
Sbjct: 157 KDPFLQTGLMGMYVGCGKILEARLVFDKMSYRDVVTWSTMINGYYQGGHFDDALQLFEEM 216
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY--CICA 121
++SN+ D+ + +I++A A + L G+ + I +N D + LI +Y C C
Sbjct: 217 RSSNVEPDKMVLSTIISACARAKNLGYGKEVHDLIIENNFALDPHLESGLISLYAGCGCM 276
Query: 122 DVEKA-------------------------------------QKDKFSWTTMIVGLAISG 144
D+ K +KD W+ MI G A S
Sbjct: 277 DMAKELFTNMSSRNLVVSTTMVSGYLKVGRIEDARLIFNQMDEKDLICWSIMISGYAESD 336
Query: 145 NGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+AL +F++M I+PDEV + V+SAC H
Sbjct: 337 QPQEALHLFNEMQFLGIEPDEVTMLSVISACAH 369
>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 66/181 (36%), Positives = 103/181 (56%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV A+V+ Y G + AR+ FD++ ER V W +MI GY + +EA+ LF M+
Sbjct: 145 DVYVQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMK 204
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ + D T VS+L+A A+L A LG W+ YI N + ++ G +LI+MY C +V
Sbjct: 205 ETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVS 264
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
KA +++ +WT MI G +G G +A+++F +M R + P+ + +V VLSAC
Sbjct: 265 KAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSACA 324
Query: 177 H 177
H
Sbjct: 325 H 325
Score = 82.0 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 9/167 (5%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFR-EALTLFQEMQTSNIMGDEFTIVSI 78
G + RQ F +P D L+T++I + + F +L + M SN+ +T S+
Sbjct: 58 GSISYTRQIFLAVPNPDSFLFTSLIKSTSKSHNFSIYSLYFYSRMVLSNVSPSNYTFTSV 117
Query: 79 LTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--DKF----- 131
+ + A+L AL G + ++ + D++ AL+ +Y C D+ A+K DK
Sbjct: 118 IKSCADLSALKHGRVVHGHVLVHGFGLDVYVQAALVALYGKCGDLINARKVFDKIRERSI 177
Query: 132 -SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+W +MI G +G +A+ +F +M ++PD +V VLSAC H
Sbjct: 178 VAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAH 224
>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
Length = 485
Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 104/175 (59%), Gaps = 8/175 (4%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
AI+ Y ++ A++ F+++ E+D + WT+M+ G + F+E+L LF++MQ I
Sbjct: 51 AILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEP 110
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--- 127
DE T+V +L+A A ALD G++I IDK ++ D+ AL+DMY C ++ A
Sbjct: 111 DEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVF 170
Query: 128 -----KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
++ F+W MI GLA+ G+G+ A+ +F QM + PD+V ++ +L AC+H
Sbjct: 171 RRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSH 225
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 71/118 (60%), Gaps = 8/118 (6%)
Query: 67 NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126
N+ DE T+VS++ A A L L+ G+ + +Y + + ++ NA++DMYC C D+E A
Sbjct: 6 NLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESA 65
Query: 127 Q--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
Q KD SWT+M+ GLA SG ++L +F +M I+PDE+ VGVLSAC
Sbjct: 66 QEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACA 123
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 85/181 (46%), Gaps = 12/181 (6%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N D++ TA+V Y G +D+A Q F +M R+ W AMI G +A++LF +
Sbjct: 144 NCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQ 203
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
M+ +M D+ T +++L A ++ +D G + +K +++ + ++D+ C
Sbjct: 204 MEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRAR 263
Query: 122 DVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
V+ A + + W T++ G+ D A + +++ ++PD +L
Sbjct: 264 KVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIXRRVIE--LEPDSCGRYVML 321
Query: 173 S 173
S
Sbjct: 322 S 322
>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
gi|194706828|gb|ACF87498.1| unknown [Zea mays]
Length = 570
Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 67/185 (36%), Positives = 102/185 (55%), Gaps = 9/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K V+SWT+++ G VD AR FD MPER+ V W MI Y++ ++ EAL L+
Sbjct: 207 MPIKSVVSWTSMLCAQTKHGSVDAARCWFDHMPERNTVSWNTMISCYVQRGQYHEALDLY 266
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++MQ+ DE T+V +L+A + L +G+ + YI N DI N+L+DMY C
Sbjct: 267 KQMQSHGPAPDEATLVPVLSACGRIGDLTVGKMVHLYIRDNIHNPDISLINSLLDMYAKC 326
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
V+ A ++ SW +I GLA+ G A+ F M+R + PD + +V +L
Sbjct: 327 GQVDTAIRLFREMCNRNVVSWNVIIGGLAMHGRALDAITFFRSMVR-NTSPDGITFVALL 385
Query: 173 SACTH 177
S+C+H
Sbjct: 386 SSCSH 390
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 61/204 (29%), Positives = 89/204 (43%), Gaps = 39/204 (19%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y + G + +R+ FD+M R+ V W +MI GY + REA LF EM+ +G
Sbjct: 85 ALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGGYAQAGDTREACALFGEMRRQGFLG 144
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA---- 126
DEFT+ S+L A + L+ G + + + D+ G AL+DMY C D+ A
Sbjct: 145 DEFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPVDLILGGALVDMYSKCGDLCMARRCF 204
Query: 127 -----------------------------------QKDKFSWTTMIVGLAISGNGDKALD 151
+++ SW TMI G +ALD
Sbjct: 205 EMMPIKSVVSWTSMLCAQTKHGSVDAARCWFDHMPERNTVSWNTMISCYVQRGQYHEALD 264
Query: 152 MFSQMLRASIKPDEVAYVGVLSAC 175
++ QM PDE V VLSAC
Sbjct: 265 LYKQMQSHGPAPDEATLVPVLSAC 288
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 8/157 (5%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88
FD + + D V++ + Y + REAL L + M ++ +EFT+ ++ A +A
Sbjct: 2 FDGILDPDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQAW 61
Query: 89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKFSWTTMIVGL 140
D + K +F NAL+ Y + E A ++ SW +MI G
Sbjct: 62 DNALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGGY 121
Query: 141 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
A +G+ +A +F +M R DE +L AC+
Sbjct: 122 AQAGDTREACALFGEMRRQGFLGDEFTLASLLLACSQ 158
>gi|255581962|ref|XP_002531779.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528572|gb|EEF30593.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 518
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 104/185 (56%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V++ TA+++ Y+ G + +A + F +M + V W AMI G++ +R + + LF
Sbjct: 238 MPVKNVVACTAMITGYMKLGFIKLAEKLFKEMSTDNVVTWNAMISGFIENSRAEDGVKLF 297
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M I + T+ S+L + L AL LG + + K+ + +D+ AG +L+ MYC C
Sbjct: 298 RTMVGFGIRPNPSTLSSLLLGCSELSALQLGRQVHQLVCKSPLASDMTAGTSLVSMYCKC 357
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
D+E A +KD +W MI G A+ G G+KAL +F +M + I PD + +V VL
Sbjct: 358 GDLEDAWKLFLELPRKDVVTWNAMISGYALHGAGEKALRLFDEMKKEGITPDWITFVAVL 417
Query: 173 SACTH 177
AC H
Sbjct: 418 LACNH 422
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 70/176 (39%), Gaps = 31/176 (17%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ NKD SW ++S + G++ A + F QMP ++ V W AMI GY+ A LF
Sbjct: 176 IPNKDPASWNTLISGFSQNGKMAKAHKLFLQMPYKNVVTWNAMISGYIACGDLTSAWKLF 235
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M N++ +++T L + L E +F
Sbjct: 236 KTMPVKNVVA----CTAMITGYMKLGFIKLAE-------------KLFK----------- 267
Query: 121 ADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
E + + +W MI G + + + +F M+ I+P+ +L C+
Sbjct: 268 ---EMSTDNVVTWNAMISGFIENSRAEDGVKLFRTMVGFGIRPNPSTLSSLLLGCS 320
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ + T++VS Y G ++ A + F ++P +D V W AMI GY +AL LF EM+
Sbjct: 343 DMTAGTSLVSMYCKCGDLEDAWKLFLELPRKDVVTWNAMISGYALHGAGEKALRLFDEMK 402
Query: 65 TSNIMGDEFTIVSILTARANLRALDLG 91
I D T V++L A + DLG
Sbjct: 403 KEGITPDWITFVAVLLACNHAGFADLG 429
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 64/164 (39%), Gaps = 48/164 (29%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRV-NRFREALTLF 60
K DVI +++ +I G +D A + F+ M + V W +++ GY R + + A LF
Sbjct: 83 KVNDVILSNQVITSFIRSGDLDSALELFNNMTIKTTVTWNSILAGYSRKRGKMKNARELF 142
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++ + D + N ++ Y
Sbjct: 143 DKIP---------------------------------------EPDTISYNTMLACYVHN 163
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQM 156
+D+EKAQ KD SW T+I G + +G KA +F QM
Sbjct: 164 SDMEKAQAFFDLIPNKDPASWNTLISGFSQNGKMAKAHKLFLQM 207
>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Cucumis sativus]
Length = 759
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 104/183 (56%), Gaps = 9/183 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
++ ++W ++S Y G++ +AR+ FD MP+RD V W +MI GY + ++ LF+EM
Sbjct: 323 RNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEM 382
Query: 64 QTS-NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ +I DE TI S+L+A ++ AL L W+ + + +K I N+LI MY C
Sbjct: 383 ISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGS 442
Query: 123 VEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
V A +D S+ T+I G A +G+G +A+ + M I+PD V Y+GVL+A
Sbjct: 443 VADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTA 502
Query: 175 CTH 177
C+H
Sbjct: 503 CSH 505
Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 102/218 (46%), Gaps = 41/218 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++I+WT++V+ Y G ++ AR+ FD+MPER V W AM Y + +EAL LF
Sbjct: 187 MPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLF 246
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M I D+ T V +++ +++ L + I ID+ + + F AL+DM+
Sbjct: 247 HQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKF 306
Query: 121 ADVEKA----------------------------------------QKDKFSWTTMIVGL 140
++E A ++D SW +MI G
Sbjct: 307 GNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGY 366
Query: 141 AISGNGDKALDMFSQMLRA-SIKPDEVAYVGVLSACTH 177
A +G ++++F +M+ I+PDEV VLSAC H
Sbjct: 367 AQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGH 404
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 71/166 (42%), Gaps = 31/166 (18%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
AI+ Y GQVD+AR F+QM ER W +MI G + EA+ LF M NI+
Sbjct: 135 AILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNII- 193
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDK 130
T S++T A + L E + Y D E ++
Sbjct: 194 ---TWTSMVTGYAKMGDL---ESARRYFD------------------------EMPERSV 223
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
SW M A +AL++F QML I PD+ +V +S+C+
Sbjct: 224 VSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCS 269
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 13/136 (9%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88
F P D +++ M+ Y R+ + ++LF+ + N+ F + ++ A
Sbjct: 57 FTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKL-----AG 111
Query: 89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKFSWTTMIVGL 140
G Y+ K +D F NA++DMY V + A++ W +MI G
Sbjct: 112 KSGNMFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGC 171
Query: 141 AISGNGDKALDMFSQM 156
SGN +A+ +F+ M
Sbjct: 172 WKSGNETEAVVLFNMM 187
Score = 40.0 bits (92), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%)
Query: 6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT 65
+ + +++ Y G V A + F M RD V + +I G+ +EA+ L M+
Sbjct: 427 ISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEE 486
Query: 66 SNIMGDEFTIVSILTARANLRALDLGE 92
I D T + +LTA ++ L+ G+
Sbjct: 487 EGIEPDHVTYIGVLTACSHAGLLNEGK 513
>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 695
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 104/181 (57%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D ++ + I++ Y G+VD AR+ F + E+D V WTAM+ GY + R +AL LF EM
Sbjct: 255 DQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEML 314
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+I D +T+ S++++ A L +L G+ + + N++ +ALIDMY C ++
Sbjct: 315 LEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFID 374
Query: 125 KAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A+ ++ SW MIVG A +G+ AL++F ML+ KPD V ++G+LSAC
Sbjct: 375 DARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACL 434
Query: 177 H 177
H
Sbjct: 435 H 435
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 93/182 (51%), Gaps = 8/182 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D+ SW A++S Y G + + FD+MP RD V + I G+ + +E+L LF
Sbjct: 84 MLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELF 143
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ MQ E+TIVSIL A A L L G+ I I ++F NAL DMY C
Sbjct: 144 KRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKC 203
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++E+A +K+ SW MI G A +G +K + + QM + PD+V ++
Sbjct: 204 GEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTII 263
Query: 173 SA 174
+A
Sbjct: 264 AA 265
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 43/179 (24%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+V W A+ Y G+++ AR FD + +++ V W MI GY + + + + L +M+
Sbjct: 189 NVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMR 248
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
S M D+ T+ +I+ A YC C V+
Sbjct: 249 LSGHMPDQVTMSTIIAA-----------------------------------YCQCGRVD 273
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+A +KD WT M+VG A +G + AL +F++ML I+PD V+S+C
Sbjct: 274 EARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSC 332
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N +++ +A++ Y G +D AR F+ MP R+ V W AMI G + ++AL LF+
Sbjct: 354 NNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFEN 413
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGE 92
M D T + IL+A + ++ G+
Sbjct: 414 MLQQKFKPDNVTFIGILSACLHCNWIEQGQ 443
>gi|414883628|tpg|DAA59642.1| TPA: hypothetical protein ZEAMMB73_113196, partial [Zea mays]
Length = 635
Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 62/181 (34%), Positives = 101/181 (55%), Gaps = 8/181 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+DV++W A+++ Y+ G V +AR+ FD MP RD V W+ +I GY++ AL +F+ M
Sbjct: 197 RDVVTWNAVLAGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNM 256
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ +E IV+ L+A A L L+ G+++ + + + + G ALIDMY C V
Sbjct: 257 VAQGVKANEAAIVTALSAAAQLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSV 316
Query: 124 EKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
A+ +D F+W +MI GLA G G A+ +F + + P + +VGVL+AC
Sbjct: 317 AAAKEVFDAMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNAC 376
Query: 176 T 176
+
Sbjct: 377 S 377
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 39/166 (23%), Positives = 70/166 (42%), Gaps = 27/166 (16%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G V A++ FD MP RD W +MI G +A+ LF++ +
Sbjct: 305 ALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCP 364
Query: 71 DEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
T V +L A + +D G + K +K +++++ ++D+
Sbjct: 365 TSITFVGVLNACSRTGLVDEGRRYFKLMAEKYDIESEMEHYGCMVDL------------- 411
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
L+ +G +A+++ M I PD V + +LSAC
Sbjct: 412 ----------LSRAGLVQEAVELIEGM---RIPPDPVLWGTILSAC 444
>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
Length = 637
Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 62/181 (34%), Positives = 101/181 (55%), Gaps = 8/181 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+DV++W A+++ Y+ G V +AR+ FD MP RD V W+ +I GY++ AL +F+ M
Sbjct: 197 RDVVTWNAVLAGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNM 256
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ +E IV+ L+A A L L+ G+++ + + + + G ALIDMY C V
Sbjct: 257 VAQGVKANEAAIVTALSAAAQLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSV 316
Query: 124 EKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
A+ +D F+W +MI GLA G G A+ +F + + P + +VGVL+AC
Sbjct: 317 AAAKEVFDAMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNAC 376
Query: 176 T 176
+
Sbjct: 377 S 377
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 39/166 (23%), Positives = 70/166 (42%), Gaps = 27/166 (16%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G V A++ FD MP RD W +MI G +A+ LF++ +
Sbjct: 305 ALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCP 364
Query: 71 DEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
T V +L A + +D G + K +K +++++ ++D+
Sbjct: 365 TSITFVGVLNACSRTGLVDEGRRYFKLMAEKYDIESEMEHYGCMVDL------------- 411
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
L+ +G +A+++ M I PD V + +LSAC
Sbjct: 412 ----------LSRAGLVQEAVELIEGM---RIPPDPVLWGTILSAC 444
>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 107/189 (56%), Gaps = 11/189 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DVISWT +++ Y G ++ A + F+ +P +D V WTAM+ G+ + + +EAL F
Sbjct: 210 MPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYF 269
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN--KVKNDIFAGNALIDMYC 118
M+ S I DE T+ ++A A L A + K+ + + G+ALIDMY
Sbjct: 270 DRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYS 329
Query: 119 ICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYV 169
C +VE+A K+ F++++MI+GLA G +AL +F M+ + IKP+ V +V
Sbjct: 330 KCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFV 389
Query: 170 GVLSACTHN 178
G L AC+H+
Sbjct: 390 GALMACSHS 398
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 82/190 (43%), Gaps = 39/190 (20%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
AR+ + + R+ LWTA+I GY +F EA+ ++ M+ I FT ++L A
Sbjct: 102 ARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGT 161
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------------- 127
++ L+LG + + ++ GN +IDMY C ++ A+
Sbjct: 162 MKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTEL 221
Query: 128 ----------------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165
KD +WT M+ G A + +AL+ F +M ++ I+ DE
Sbjct: 222 IAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADE 281
Query: 166 VAYVGVLSAC 175
V G +SAC
Sbjct: 282 VTVAGYISAC 291
>gi|357167426|ref|XP_003581157.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61800-like, partial [Brachypodium distachyon]
Length = 357
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 104/185 (56%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M DV+S+ A++ YI G++ +A + F +MP+RD V W ++ G + R+ EA+ LF
Sbjct: 39 MPAPDVVSYNALMDGYIKAGRLGLATKEFMRMPQRDAVSWGTVVAGCAKAGRWEEAVLLF 98
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M+ D+ + ++L+ A L AL+ G + Y+ +++ + ++F L+D+Y C
Sbjct: 99 DRMRWEGFRPDDIVLAAVLSCCAQLGALEKGREVHEYVRQSRPRPNVFLCTGLVDLYAKC 158
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VE A +++ F+W +IVGLA+ G+G L F +ML +PD V ++GVL
Sbjct: 159 GCVEIAREVFDTCPERNVFTWNALIVGLAMHGHGTVTLKYFDRMLAEGFRPDGVTFLGVL 218
Query: 173 SACTH 177
C+H
Sbjct: 219 IGCSH 223
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 10/158 (6%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
+V T +V Y G V+IAR+ FD PER+ W A+I G L F
Sbjct: 141 PRPNVFLCTGLVDLYAKCGCVEIAREVFDTCPERNVFTWNALIVGLAMHGHGTVTLKYFD 200
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYID-KNKVKNDIFAGNALIDMYCIC 120
M D T + +L ++ +D+ + I ++ K V ++ + D+
Sbjct: 201 RMLAEGFRPDGVTFLGVLIGCSHAGLIDMAKRIFFEMEMKYGVSRELKHYGCMADLLGRA 260
Query: 121 ADVEKA---------QKDKFSWTTMIVGLAISGNGDKA 149
+E+A + D + W ++ G GN ++A
Sbjct: 261 GLIEEAMEMVKKMPMEGDTYVWGGILAGCRKHGNVEEA 298
>gi|345505214|gb|AEN99831.1| chlororespiratory reduction 4 [Brassica rapa]
Length = 612
Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 74/218 (33%), Positives = 107/218 (49%), Gaps = 40/218 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD+ISW +++ Y+ G+++ A+ FD MP RD V W MIDGY ++ EA TLF
Sbjct: 254 MPEKDLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHEAKTLF 313
Query: 61 QEM--------------------------------QTSNIMGDEFTIVSILTARANLRAL 88
+M + S++ DE ++V +L+A A L L
Sbjct: 314 DQMPHRDVVVYNSMMSGXVQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSAXAQLGRL 373
Query: 89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGL 140
+ YI + + + G ALIDMY C ++ A K W MI GL
Sbjct: 374 SKAIDMHLYIVEKQFPSSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGL 433
Query: 141 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
A+ G G+ A DM Q+ R SIKPD + +VGVL+AC+H+
Sbjct: 434 AVHGLGESAFDMLLQIERRSIKPDHITFVGVLNACSHS 471
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 52/184 (28%), Positives = 81/184 (44%), Gaps = 21/184 (11%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM- 63
D+ ++ YI G + ARQ FD+MP+RD V + +MIDGYL+ A LF M
Sbjct: 162 DLFLQNCLIGLYIKCGCLGFARQVFDRMPQRDSVSYNSMIDGYLKCGLVESAGELFGLMP 221
Query: 64 -QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ N++ T S++ A RA + K + + D+ + N++I Y
Sbjct: 222 REKRNLI----TWNSMIGGYAQ-RADGVNVAAKLF--DEMPEKDLISWNSMIGGYVKHGR 274
Query: 123 VEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+E A+ +D +W MI G G +A +F QM D V Y ++S
Sbjct: 275 IEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHEAKTLFDQMPHR----DVVVYNSMMSG 330
Query: 175 CTHN 178
N
Sbjct: 331 XVQN 334
Score = 41.2 bits (95), Expect = 0.18, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 8/131 (6%)
Query: 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIK 95
D LW +I + R+AL L M + + D+F+ L A + L + G +
Sbjct: 92 DPFLWNVVIKSHSHGVDPRKALFLLCLMLENGVPVDKFSFSLALKACSRLGFVKEGTQVH 151
Query: 96 TYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGD 147
++ K +D+F N LI +Y C + A Q+D S+ +MI G G +
Sbjct: 152 GFLIKTGTWSDLFLQNCLIGLYIKCGCLGFARQVFDRMPQRDSVSYNSMIDGYLKCGLVE 211
Query: 148 KALDMFSQMLR 158
A ++F M R
Sbjct: 212 SAGELFGLMPR 222
>gi|225438593|ref|XP_002276456.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial [Vitis vinifera]
gi|296082485|emb|CBI21490.3| unnamed protein product [Vitis vinifera]
Length = 637
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 99/183 (54%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ D+ ++S Y G + AR FD M + V WTAMI GY EA+TLF
Sbjct: 290 DSDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGYAEKGDLDEAMTLFSA 349
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M+ D TI+S+++ AL+LG+WI TY N +K+++ NALID+Y C
Sbjct: 350 MEAVGEKPDLVTIISLMSGCGQTGALELGKWIDTYATANGLKDNLMVCNALIDVYAKCGS 409
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
++ A +K SWTT+I G A++G +AL +F QM+ +KP+ + ++ VL A
Sbjct: 410 MDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFFQMVELGLKPNHITFLAVLQA 469
Query: 175 CTH 177
C H
Sbjct: 470 CNH 472
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 10/170 (5%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ T++V Y+ Q+ A F +MP+RD W +MI G+ ++ ++LF EM
Sbjct: 88 DLFVQTSVVDMYVKCSQLGFAYNLFSRMPKRDVASWNSMILGFAQLGFVDRVVSLFCEMG 147
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD-- 122
I D T++ + + +L+ L + E I ++ K + D+ N I Y C +
Sbjct: 148 IEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDTDVSVSNTWIAAYAKCGEFG 207
Query: 123 --------VEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 164
++K K SW +MI G A KA+ F +ML + D
Sbjct: 208 LAETVFDGIDKGLKTGVSWNSMIAGYAHFEQCSKAVGFFKKMLCGGFRAD 257
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 83/173 (47%), Gaps = 10/173 (5%)
Query: 13 VSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
++ Y G+ +A FD + + + V W +MI GY + +A+ F++M
Sbjct: 197 IAAYAKCGEFGLAETVFDGIDKGLKTGVSWNSMIAGYAHFEQCSKAVGFFKKMLCGGFRA 256
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--- 127
D TI+S+L++ L G+ I + + +DI N LI MY C D+ A+
Sbjct: 257 DLSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLF 316
Query: 128 -----KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
K + SWT MI G A G+ D+A+ +FS M KPD V + ++S C
Sbjct: 317 DNMLGKTRVSWTAMIAGYAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGC 369
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 71/140 (50%), Gaps = 8/140 (5%)
Query: 40 WTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYID 99
W + I + +AL LF++M+ + + + T S+ A + L L + + T++
Sbjct: 22 WNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVHTHVV 81
Query: 100 KNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALD 151
K++ + D+F +++DMY C+ + A ++D SW +MI+G A G D+ +
Sbjct: 82 KSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPKRDVASWNSMILGFAQLGFVDRVVS 141
Query: 152 MFSQMLRASIKPDEVAYVGV 171
+F +M I+ D V +G+
Sbjct: 142 LFCEMGIEGIRADSVTVIGL 161
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 69/165 (41%), Gaps = 25/165 (15%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G +D AR+ F MPE+ V WT +I G F+EAL LF +M +
Sbjct: 399 ALIDVYAKCGSMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFFQMVELGLKP 458
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDK 130
+ T +++L A + L+ G W + + ++ N +D Y AD+
Sbjct: 459 NHITFLAVLQACNHAGFLEKG-W-----ECFNLMTKVYKINPGLDHYSCMADL------- 505
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
L G +A + M KPD + +LSAC
Sbjct: 506 ---------LGRKGRLKEAFEFIQNM---PFKPDVGIWSVLLSAC 538
>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Cucumis sativus]
Length = 759
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 104/183 (56%), Gaps = 9/183 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
++ ++W ++S Y G++ +AR+ FD MP+RD V W +MI GY + ++ LF+EM
Sbjct: 323 RNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEM 382
Query: 64 QTS-NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ +I DE TI S+L+A ++ AL L W+ + + +K I N+LI MY C
Sbjct: 383 ISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGS 442
Query: 123 VEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
V A +D S+ T+I G A +G+G +A+ + M I+PD V Y+GVL+A
Sbjct: 443 VADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTA 502
Query: 175 CTH 177
C+H
Sbjct: 503 CSH 505
Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 102/218 (46%), Gaps = 41/218 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++I+WT++V+ Y G ++ AR+ FD+MPER V W AM Y + +EAL LF
Sbjct: 187 MPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLF 246
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M I D+ T V +++ +++ L + I ID+ + + F AL+DM+
Sbjct: 247 HQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKF 306
Query: 121 ADVEKA----------------------------------------QKDKFSWTTMIVGL 140
++E A ++D SW +MI G
Sbjct: 307 GNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGY 366
Query: 141 AISGNGDKALDMFSQMLRA-SIKPDEVAYVGVLSACTH 177
A +G ++++F +M+ I+PDEV VLSAC H
Sbjct: 367 AQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGH 404
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 71/166 (42%), Gaps = 31/166 (18%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
AI+ Y GQVD+AR F+QM ER W +MI G + EA+ LF M NI+
Sbjct: 135 AILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNII- 193
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDK 130
T S++T A + L E + Y D E ++
Sbjct: 194 ---TWTSMVTGYAKMGDL---ESARRYFD------------------------EMPERSV 223
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
SW M A +AL++F QML I PD+ +V +S+C+
Sbjct: 224 VSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCS 269
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 13/136 (9%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88
F P D +++ M+ Y R+ + ++LF+ + N+ F + ++ A
Sbjct: 57 FTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKL-----AG 111
Query: 89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKFSWTTMIVGL 140
G Y+ K +D F NA++DMY V + A++ W +MI G
Sbjct: 112 KSGNLFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGC 171
Query: 141 AISGNGDKALDMFSQM 156
SGN +A+ +F+ M
Sbjct: 172 WKSGNETEAVVLFNMM 187
Score = 40.0 bits (92), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%)
Query: 6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT 65
+ + +++ Y G V A + F M RD V + +I G+ +EA+ L M+
Sbjct: 427 ISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEE 486
Query: 66 SNIMGDEFTIVSILTARANLRALDLGE 92
I D T + +LTA ++ L+ G+
Sbjct: 487 EGIEPDHVTYIGVLTACSHAGLLNEGK 513
>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g68930-like [Cucumis
sativus]
Length = 695
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 104/181 (57%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D ++ + I++ Y G+VD AR+ F + E+D V WTAM+ GY + R +AL LF EM
Sbjct: 255 DQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEML 314
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+I D +T+ S++++ A L +L G+ + + N++ +ALIDMY C ++
Sbjct: 315 LEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFID 374
Query: 125 KAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A+ ++ SW MIVG A +G+ AL++F ML+ KPD V ++G+LSAC
Sbjct: 375 DARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACL 434
Query: 177 H 177
H
Sbjct: 435 H 435
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 92/182 (50%), Gaps = 8/182 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D SW A++S Y G + + FD+MP RD V + I G+ + +E+L LF
Sbjct: 84 MLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELF 143
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ MQ E+TIVSIL A A L L G+ I I ++F NAL DMY C
Sbjct: 144 KRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKC 203
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++E+A +K+ SW MI G A +G +K + + QM + PD+V ++
Sbjct: 204 GEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTII 263
Query: 173 SA 174
+A
Sbjct: 264 AA 265
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 43/179 (24%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+V W A+ Y G+++ AR FD + +++ V W MI GY + + + + L +M+
Sbjct: 189 NVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMR 248
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
S M D+ T+ +I+ A YC C V+
Sbjct: 249 LSGHMPDQVTMSTIIAA-----------------------------------YCQCGRVD 273
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+A +KD WT M+VG A +G + AL +F++ML I+PD V+S+C
Sbjct: 274 EARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSC 332
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N +++ +A++ Y G +D AR F+ MP R+ V W AMI G + ++AL LF+
Sbjct: 354 NNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFEN 413
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGE 92
M D T + IL+A + ++ G+
Sbjct: 414 MLQQKFKPDNVTFIGILSACLHCNWIEQGQ 443
>gi|7671499|emb|CAB89340.1| putative protein [Arabidopsis thaliana]
Length = 514
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 114/191 (59%), Gaps = 14/191 (7%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD ++W +++ + ++D AR+ FD+ E+D V W AMI GY+ +EAL +F
Sbjct: 170 MPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIF 229
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYI-DKNKVKNDIFAG----NALID 115
+EM+ + D TI+S+L+A A L L+ G+ + YI + V + I+ G NALID
Sbjct: 230 KEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALID 289
Query: 116 MYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 167
MY C +++A +D +W T+IVGLA+ + + +++MF +M R + P+EV
Sbjct: 290 MYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVWPNEVT 348
Query: 168 YVGVLSACTHN 178
++GV+ AC+H+
Sbjct: 349 FIGVILACSHS 359
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G + A + FD++P+ D + ++ G + + + ++L+ EM+ + D +T +L
Sbjct: 26 GALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVL 85
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKF 131
A + L G + ++ + + NALI + C D+ + A+ K
Sbjct: 86 KACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKV 145
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+W++M G A G D+A+ +F +M D+VA+ +++ C
Sbjct: 146 AWSSMTSGYAKRGKIDEAMRLFDEMPYK----DQVAWNVMITGC 185
>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 600
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 107/187 (57%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMP--ERDYVLWTAMIDGYLRVNRFREALT 58
M ++ +SW+ +V Y G +++AR FD+MP ++ V WT +I GY +EA
Sbjct: 242 MPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADR 301
Query: 59 LFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC 118
L +M S + D ++SIL A L LG I + + ++ + ++ + NAL+DMY
Sbjct: 302 LVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYA 361
Query: 119 ICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C +++KA +KD SW TM+ GL + G+G +A+++FS+M R I+PD+V ++
Sbjct: 362 KCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIA 421
Query: 171 VLSACTH 177
VL +C H
Sbjct: 422 VLCSCNH 428
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 10/146 (6%)
Query: 21 QVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80
Q ++A + F+Q+ E + L ++I + + ++ +A +F EMQ + D FT +L
Sbjct: 66 QTNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLK 125
Query: 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV---------EK-AQKDK 130
A + L + + + +I+K + +DI+ NALID Y C + EK +++D
Sbjct: 126 ACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDT 185
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQM 156
SW +M+ GL +G A +F +M
Sbjct: 186 VSWNSMLGGLVKAGELRDARRLFDEM 211
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 88/188 (46%), Gaps = 20/188 (10%)
Query: 3 NKDVISWTAIVSRYINRGQVDI--ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ D+ A++ Y G + + A + F++M ERD V W +M+ G ++ R+A LF
Sbjct: 149 SSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLF 208
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM +++ + R +A +L E + ++N V + + ++ Y
Sbjct: 209 DEMPQRDLISWNTMLDGYARCREMSKAFELFEKMP---ERNTV-----SWSTMVMGYSKA 260
Query: 121 ADVEKAQ----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
D+E A+ K+ +WT +I G A G +A + QM+ + +K D A +
Sbjct: 261 GDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVIS 320
Query: 171 VLSACTHN 178
+L+ACT +
Sbjct: 321 ILAACTES 328
Score = 42.7 bits (99), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
A++ Y G + A F+ +P++D V W M+ G +EA+ LF M+ I
Sbjct: 354 NALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIR 413
Query: 70 GDEFTIVSILTARANLRALDLG 91
D+ T +++L + + +D G
Sbjct: 414 PDKVTFIAVLCSCNHAGLIDEG 435
>gi|345505218|gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wallichii]
Length = 617
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 109/192 (56%), Gaps = 19/192 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFR-EALTL 59
M +DV++W+ ++ Y G V A+ FDQMP RD V + +MI GY++ NR+ EAL +
Sbjct: 282 MPRRDVVTWSTMIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMIAGYVQ-NRYNMEALEI 340
Query: 60 FQEMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGN----ALI 114
F +M+ S++ DE T+V +L+A A L L + YI V+ F G ALI
Sbjct: 341 FSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYI----VEKQFFLGGKLGVALI 396
Query: 115 DMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 166
DMY C ++ A K W MI GLAI G G+ A DM Q+ R SIKPD++
Sbjct: 397 DMYSKCGSIQHAMLVFKGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDI 456
Query: 167 AYVGVLSACTHN 178
+VG+L+AC+H+
Sbjct: 457 TFVGLLNACSHS 468
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 93/207 (44%), Gaps = 39/207 (18%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF---- 60
D+ ++ Y+ G + ARQ FD+MP+RD V + +MIDGY++ A LF
Sbjct: 159 DLFLQNCLIGLYLKCGWLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSTESARELFDLMP 218
Query: 61 QEMQ-----TSNIMG-----DEFTIVSILTARANLRALDLGEW---IKTYIDKNKVKN-- 105
+EM+ S I G D I S L + + DL W I Y+ ++++
Sbjct: 219 EEMKNLISWNSMISGYAQTSDGVDIASKLFSEMPDK--DLISWNSMIDGYVKHGRIEDAK 276
Query: 106 ---------DIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDK 148
D+ + +ID Y V +A +D S+ +MI G + +
Sbjct: 277 YLFDVMPRRDVVTWSTMIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMIAGYVQNRYNME 336
Query: 149 ALDMFSQMLRAS-IKPDEVAYVGVLSA 174
AL++FS M + S + PDE V VLSA
Sbjct: 337 ALEIFSDMEKESHLSPDETTLVIVLSA 363
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 8/129 (6%)
Query: 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIK 95
D LW A+I + R AL LF M + + D+F++ +L A + L + G I
Sbjct: 89 DXYLWNAVIKSHSHGTDPRRALLLFCLMLENGVSVDKFSLSLVLKACSRLGLVKEGMQIH 148
Query: 96 TYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGD 147
++ K + +D+F N LI +Y C + A Q+D S+ +MI G G+ +
Sbjct: 149 GFLKKTGLWSDLFLQNCLIGLYLKCGWLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSTE 208
Query: 148 KALDMFSQM 156
A ++F M
Sbjct: 209 SARELFDLM 217
>gi|357507475|ref|XP_003624026.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124360495|gb|ABN08505.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499041|gb|AES80244.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 646
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 105/185 (56%), Gaps = 9/185 (4%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
K + + W A++S Y G + AR FD+MP+RD V W +MI GY + +A+ LF+
Sbjct: 333 KYRSSVPWNAMISAYARVGDLPSARHLFDKMPQRDTVSWNSMIAGYTQNGESVKAIKLFE 392
Query: 62 EMQTS-NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM +S + DE T+VS+ +A +L L LG W + + +N ++ I N+LI MY C
Sbjct: 393 EMISSEDSKPDEVTMVSVFSACGHLGELGLGNWAVSILKENHIQISISVYNSLISMYSRC 452
Query: 121 ADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ E A +D S+ T+I G A G+G +++++ +M I+PD + Y+ +L
Sbjct: 453 GSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLLKMKEDGIEPDRITYIAIL 512
Query: 173 SACTH 177
+AC+H
Sbjct: 513 TACSH 517
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 45/220 (20%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+++VI+WT +++ + +G + AR FD+MPER V W AM+ GY + E + LF +
Sbjct: 197 SRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFND 256
Query: 63 M-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN-KVKNDIFAGNALIDMYCIC 120
M N+ DE T V+++++ ++L L E I +D + + F AL+DM+ C
Sbjct: 257 MLSPGNVQPDETTWVTVISSCSSLGDPCLSESIVRKLDDTVGFRPNYFVKTALLDMHAKC 316
Query: 121 ADVEKA------------------------------------------QKDKFSWTTMIV 138
++E A Q+D SW +MI
Sbjct: 317 GNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSARHLFDKMPQRDTVSWNSMIA 376
Query: 139 GLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSACTH 177
G +G KA+ +F +M+ + KPDEV V V SAC H
Sbjct: 377 GYTQNGESVKAIKLFEEMISSEDSKPDEVTMVSVFSACGH 416
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 28/167 (16%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
I+ Y G ++ AR+ FD+MP+R W MI GY + EA TLF M I
Sbjct: 139 GILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEISR 198
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDK 130
+ T +++T A L + Y DK ++
Sbjct: 199 NVITWTTMITGHAKKGNLKTA---RMYFDK------------------------MPERSV 231
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGVLSACT 176
SW M+ G A G ++ + +F+ ML +++PDE +V V+S+C+
Sbjct: 232 VSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWVTVISSCS 278
>gi|345505232|gb|AEN99840.1| chlororespiratory reduction 4, partial [Olimarabidopsis pumila]
Length = 579
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 107/188 (56%), Gaps = 11/188 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFR-EALTL 59
+ +DV++W ++ Y G V A+ FDQMP RD V + +M+ GY++ NRF EAL +
Sbjct: 244 VPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVAYNSMMAGYVQ-NRFHMEALEI 302
Query: 60 FQEMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC 118
F +M+ S++ DE T+V +L+A A L L + YI + + G ALIDMY
Sbjct: 303 FSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFLLGGKLGVALIDMYS 362
Query: 119 ICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C ++ A K W MI GLAI G G+ A DM Q+ R SIKPD++ +VG
Sbjct: 363 KCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVG 422
Query: 171 VLSACTHN 178
VL+AC+H+
Sbjct: 423 VLNACSHS 430
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 17/182 (9%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ ++ Y+ G + ARQ FD+MP+RD V + +MIDGY++ A LF M
Sbjct: 121 DLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSIESASELFDLMP 180
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
M + + S+++ A G I + + + D+ + N++ID Y +E
Sbjct: 181 RE--MKNLISWNSLISGYAQTSE---GVDIASKLFAEMPEKDLISWNSMIDGYVKHGRIE 235
Query: 125 KAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A+ +D +W TMI G A G +A +F QM D VAY +++
Sbjct: 236 DAKDLFDMVPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHR----DVVAYNSMMAGYV 291
Query: 177 HN 178
N
Sbjct: 292 QN 293
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 8/132 (6%)
Query: 35 RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWI 94
D LW AMI + R AL LF M + D+F++ ++ A + L + G I
Sbjct: 50 EDPYLWNAMIKSHSHGTDPRRALLLFCLMLEIGVPVDKFSLSLVMKACSRLGFVKGGLQI 109
Query: 95 KTYIDKNKVKNDIFAGNALIDMY--CICADVEK------AQKDKFSWTTMIVGLAISGNG 146
++ K + +D+F N LI +Y C C + Q+D S+ +MI G G+
Sbjct: 110 HGFLKKTGLWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSI 169
Query: 147 DKALDMFSQMLR 158
+ A ++F M R
Sbjct: 170 ESASELFDLMPR 181
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 20/186 (10%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRVNRFRE-AL 57
M +D +S+ +++ Y+ G ++ A + FD MP ++ + W ++I GY + + + A
Sbjct: 148 MPQRDSVSYNSMIDGYVKCGSIESASELFDLMPREMKNLISWNSLISGYAQTSEGVDIAS 207
Query: 58 TLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
LF EM +++ I + A DL + + + D+ +ID Y
Sbjct: 208 KLFAEMPEKDLISWNSMIDGYVKHGRIEDAKDLFDMVP--------RRDVVTWATMIDGY 259
Query: 118 CICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAY 168
V +A +D ++ +M+ G + +AL++FS M + S + PDE
Sbjct: 260 AKLGFVHQAKTLFDQMPHRDVVAYNSMMAGYVQNRFHMEALEIFSDMEKESHLSPDETTL 319
Query: 169 VGVLSA 174
V VLSA
Sbjct: 320 VIVLSA 325
>gi|449447707|ref|XP_004141609.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Cucumis sativus]
gi|449510706|ref|XP_004163739.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Cucumis sativus]
Length = 563
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 109/196 (55%), Gaps = 19/196 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V+SWTA++S Y G D A + F+ MPERD W A+I G + F EA+ LF
Sbjct: 205 MLERTVVSWTAMISGYARLGNFDSAIELFESMPERDVPAWNALIAGCAQNGFFCEAIWLF 264
Query: 61 QEMQTSNIMG---------DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGN 111
+ M + G ++ T+ S L+A + L LG+WI Y+ K D F N
Sbjct: 265 KRMVLLALEGNNNDRENKPNKTTLGSALSACGHTGMLHLGKWIHGYVFKTYPGQDSFISN 324
Query: 112 ALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRA--SI 161
AL+DMY C +++ A+ K+ SW ++I LA+ G+ A+D+F++++ +
Sbjct: 325 ALLDMYGKCGNLKVARRVFDMITLKNLTSWNSLINCLALHGHSGSAIDLFAELIHCGDGV 384
Query: 162 KPDEVAYVGVLSACTH 177
KP+EV +VGVL+ACTH
Sbjct: 385 KPNEVTFVGVLNACTH 400
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 16/176 (9%)
Query: 15 RYINRGQVDI--ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-QTSNIMGD 71
R+ N D+ AR FD + + L+TAMI Y + A L++ M + I +
Sbjct: 83 RFCNLTLADLCYARYIFDNLTSPNVFLYTAMITAYASYPDPKAAFLLYRNMVRRGAIRPN 142
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC-ICADVEKA---- 126
F +L + ++ + + + T + K+ A++D Y +D+ A
Sbjct: 143 NFIYPHVLRSCPDVLGSNATKMVHTQVLKSGFGGYPVVQTAIVDSYSRFSSDIGSARQMF 202
Query: 127 ----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
++ SWT MI G A GN D A+++F M + D A+ +++ C N
Sbjct: 203 DEMLERTVVSWTAMISGYARLGNFDSAIELFESM----PERDVPAWNALIAGCAQN 254
Score = 36.2 bits (82), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 75/176 (42%), Gaps = 27/176 (15%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
+D A++ Y G + +AR+ FD + ++ W ++I+ A+ LF
Sbjct: 316 PGQDSFISNALLDMYGKCGNLKVARRVFDMITLKNLTSWNSLINCLALHGHSGSAIDLFA 375
Query: 62 EMQTSN--IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
E+ + +E T V +L A + ++ G +Y + + DI
Sbjct: 376 ELIHCGDGVKPNEVTFVGVLNACTHGGLVEKG---YSYFEMMRRDYDI------------ 420
Query: 120 CADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ Q + F ++G A G ++A+++ M +I+PDEV + +L+AC
Sbjct: 421 -----EPQIEHFGCLIDLLGRA--GRFEEAMEVVRGM---NIEPDEVVWGSLLNAC 466
>gi|42567862|ref|NP_197034.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635759|sp|Q9LXF2.2|PP385_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g15300
gi|332004762|gb|AED92145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 548
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 114/191 (59%), Gaps = 14/191 (7%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD ++W +++ + ++D AR+ FD+ E+D V W AMI GY+ +EAL +F
Sbjct: 204 MPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIF 263
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYI-DKNKVKNDIFAG----NALID 115
+EM+ + D TI+S+L+A A L L+ G+ + YI + V + I+ G NALID
Sbjct: 264 KEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALID 323
Query: 116 MYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 167
MY C +++A +D +W T+IVGLA+ + + +++MF +M R + P+EV
Sbjct: 324 MYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVWPNEVT 382
Query: 168 YVGVLSACTHN 178
++GV+ AC+H+
Sbjct: 383 FIGVILACSHS 393
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G + A + FD++P+ D + ++ G + + + ++L+ EM+ + D +T +L
Sbjct: 60 GALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVL 119
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKF 131
A + L G + ++ + + NALI + C D+ + A+ K
Sbjct: 120 KACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKV 179
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+W++M G A G D+A+ +F +M D+VA+ +++ C
Sbjct: 180 AWSSMTSGYAKRGKIDEAMRLFDEMPYK----DQVAWNVMITGC 219
>gi|242049246|ref|XP_002462367.1| hypothetical protein SORBIDRAFT_02g024490 [Sorghum bicolor]
gi|241925744|gb|EER98888.1| hypothetical protein SORBIDRAFT_02g024490 [Sorghum bicolor]
Length = 532
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 101/186 (54%), Gaps = 12/186 (6%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V +W +++ Y+ G+VD A + F +MP RD V WT MI G R EA+ LF
Sbjct: 204 MLTRAVAAWNCMLAAYVRCGEVDAALRFFGEMPRRDAVAWTTMIGGCANAGRAAEAVDLF 263
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVK-NDIFAGNALIDMYCI 119
M+ + + D T+V++LTA A L L+LG W+ +D + + NALI MY
Sbjct: 264 WRMRKARVKDDTVTMVALLTACAELGDLELGRWVHARVDLEGSQWRTVLLDNALIHMYLK 323
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C +E A ++ SWTTMI GLAI G+ +AL++F +M +PD + V
Sbjct: 324 CGAIEDARCLFGMMPRRSTVSWTTMISGLAIHGHPQEALNLFHRM---QDRPDGATMLAV 380
Query: 172 LSACTH 177
L AC+H
Sbjct: 381 LRACSH 386
>gi|194696956|gb|ACF82562.1| unknown [Zea mays]
gi|413957085|gb|AFW89734.1| selenium-binding protein-like protein [Zea mays]
Length = 605
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 67/183 (36%), Positives = 100/183 (54%), Gaps = 10/183 (5%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+SWT +V + G D AR FD MPER+ V W AM+ GY++ RF +AL +F EM+
Sbjct: 164 DVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEMR 223
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ G+ F + + A AL G + +++++ ++ D A++DMYC C VE
Sbjct: 224 ARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDMYCKCGCVE 283
Query: 125 K----------AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+ A K +W MI G A+ G G+ AL +F +M R + PD+V V VL+A
Sbjct: 284 EAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGEDALKLFGRMEREGVAPDDVTLVNVLTA 343
Query: 175 CTH 177
C H
Sbjct: 344 CAH 346
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMP--ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN 67
TA+V Y G V+ A + F+ +P + W MI G+ R +AL LF M+
Sbjct: 270 TAVVDMYCKCGCVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGEDALKLFGRMEREG 329
Query: 68 IMGDEFTIVSILTARANLRALDLGEWIKTYI-DKNKVKNDIFAGNALIDMYCICADVEKA 126
+ D+ T+V++LTA A+ L G Y+ + ++ + ++D+Y +E+A
Sbjct: 330 VAPDDVTLVNVLTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEA 389
Query: 127 QK 128
+K
Sbjct: 390 KK 391
>gi|413939497|gb|AFW74048.1| hypothetical protein ZEAMMB73_972326 [Zea mays]
Length = 576
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 65/188 (34%), Positives = 112/188 (59%), Gaps = 11/188 (5%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
K KDV W+ +VS Y G++ +AR+ FD+MP +D V WT ++ GY++ R++EAL LF+
Sbjct: 265 KVKDVRVWSVMVSGYARVGEIGMARKLFDEMPNKDLVAWTVLVGGYVQAGRYKEALGLFE 324
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK-VKNDIFAGNALIDMY--- 117
EM+ + + DE T+V++L+A A A+ L + + +++N V + + + +Y
Sbjct: 325 EMEAAGLEADEMTVVTVLSACAQNDAISLVKRLHYRMNQNGLVSRNARVATSFVHIYAKH 384
Query: 118 -CI--CADVEKAQKDKFS----WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
CI DV + D+F + MI GLA G G+KA+ +F +M ++PD++ +VG
Sbjct: 385 GCIQTAMDVFRGITDEFKTVELFNAMIHGLAHHGYGEKAISLFDKMESLGLQPDDITFVG 444
Query: 171 VLSACTHN 178
+L AC+ +
Sbjct: 445 ILCACSRS 452
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 59/219 (26%), Positives = 93/219 (42%), Gaps = 46/219 (21%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV + +++ Y G +A + FD+MP RD V + +I Y++ R AL +F+ M
Sbjct: 131 DVFAANSLLHFYAAFGLHALACKLFDEMPTRDTVSFNTLIGSYVQSGRVERALVVFRNMV 190
Query: 65 TSNIMGDEFTIVSILTARANL-------------------RALDLGEWIKTYIDK----- 100
DE+TI ++L A A L R LD GE + +D
Sbjct: 191 EGGFRLDEWTIRALLGACAGLGDFMVAKAAHGFASRTLRHRLLDSGEVVIGLVDMYVKCG 250
Query: 101 -------------NKVKNDIFAGNALIDMYCICADV--------EKAQKDKFSWTTMIVG 139
KVK D+ + ++ Y ++ E KD +WT ++ G
Sbjct: 251 AVHLARKTFDLFGEKVK-DVRVWSVMVSGYARVGEIGMARKLFDEMPNKDLVAWTVLVGG 309
Query: 140 LAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+G +AL +F +M A ++ DE+ V VLSAC N
Sbjct: 310 YVQAGRYKEALGLFEEMEAAGLEADEMTVVTVLSACAQN 348
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 11/139 (7%)
Query: 47 YLRVNR-FREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKN 105
+LRV R A T Q + D ++ ++L A + L + G I ++ K+ +
Sbjct: 71 FLRVLRDHHPATTGATASQEEGAVPDSRSLSAVLAACSRLESPSPGLCIHAFLLKSGFAS 130
Query: 106 DIFAGNALIDMY---------CICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
D+FA N+L+ Y C D E +D S+ T+I SG ++AL +F M
Sbjct: 131 DVFAANSLLHFYAAFGLHALACKLFD-EMPTRDTVSFNTLIGSYVQSGRVERALVVFRNM 189
Query: 157 LRASIKPDEVAYVGVLSAC 175
+ + DE +L AC
Sbjct: 190 VEGGFRLDEWTIRALLGAC 208
Score = 42.4 bits (98), Expect = 0.081, Method: Composition-based stats.
Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 14/178 (7%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN 67
T+ V Y G + A F + + + L+ AMI G +A++LF +M++
Sbjct: 375 TSFVHIYAKHGCIQTAMDVFRGITDEFKTVELFNAMIHGLAHHGYGEKAISLFDKMESLG 434
Query: 68 IMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126
+ D+ T V IL A + ++ G + + +DK VK D+ + D+ ++ A
Sbjct: 435 LQPDDITFVGILCACSRSNLVEQGCKMFSSMLDKYGVKPDVKHHACMADLLGRAGRLDDA 494
Query: 127 ----QKDKFS-----WTTMIVGLAISGNGD--KALDMFSQMLRASIKPDEVAYVGVLS 173
Q F W++++ I GN K ++ L A+ KP+++ G+ S
Sbjct: 495 YNFIQNMPFKANLVIWSSLLTACKIHGNNKIRKLVERQILGLDATYKPEKLTLSGLFS 552
>gi|357164322|ref|XP_003580018.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Brachypodium distachyon]
Length = 593
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 60/181 (33%), Positives = 108/181 (59%), Gaps = 8/181 (4%)
Query: 6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT 65
+I A++ Y+ ++D+AR+ FD++ RD + WT MI G ++ +AL +F EMQ
Sbjct: 246 LIVGNAVLDMYVKCEKLDLARRVFDRLLVRDVISWTIMISGLVQCKLPSKALEVFNEMQK 305
Query: 66 SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK 125
S + D+ + ++L+A +L AL+ G W+ YI++ ++ D+ G +L+DMY C +E
Sbjct: 306 SRVKPDKVVLSTVLSACTSLGALESGRWVHEYIERKGIEWDVHVGTSLVDMYAKCGCLET 365
Query: 126 A--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+ K+ SW +I G A+ G+G +AL+ F +M+ + + P+EV+++ VL AC H
Sbjct: 366 SLSIFRKMPLKNLSSWNALINGFALHGHGREALEHFDRMVASGLAPNEVSFIIVLGACCH 425
Query: 178 N 178
+
Sbjct: 426 S 426
Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 61/174 (35%), Positives = 97/174 (55%), Gaps = 11/174 (6%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+V+ Y G+ AR+ FD+M RD V WTA++ ++R RF EAL L +M +++
Sbjct: 153 ALVTLYGVCGECGDARRVFDEMASRDVVSWTALVSAFVRGGRFAEALVLVGQM---DVVP 209
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--- 127
+E T+ +L A L A G+ + + + + + GNA++DMY C ++ A+
Sbjct: 210 NEGTLACVLVACGRLGAARAGKAVHGWYLRRESDLKLIVGNAVLDMYVKCEKLDLARRVF 269
Query: 128 -----KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+D SWT MI GL KAL++F++M ++ +KPD+V VLSACT
Sbjct: 270 DRLLVRDVISWTIMISGLVQCKLPSKALEVFNEMQKSRVKPDKVVLSTVLSACT 323
Score = 42.0 bits (97), Expect = 0.089, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 39/77 (50%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV T++V Y G ++ + F +MP ++ W A+I+G+ REAL F M
Sbjct: 346 DVHVGTSLVDMYAKCGCLETSLSIFRKMPLKNLSSWNALINGFALHGHGREALEHFDRMV 405
Query: 65 TSNIMGDEFTIVSILTA 81
S + +E + + +L A
Sbjct: 406 ASGLAPNEVSFIIVLGA 422
>gi|125541284|gb|EAY87679.1| hypothetical protein OsI_09093 [Oryza sativa Indica Group]
Length = 493
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 101/186 (54%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + +++ ++S + G V A + FD MP D V WTA+IDG ++ R EA+ F
Sbjct: 131 MPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAINCF 190
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M + D T++++++A A + AL LG W+ + + ++ ++ N+LIDMY C
Sbjct: 191 RAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLIDMYARC 250
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VE A ++ SW +MIVG A +G A++ F M R KPD V + GVL
Sbjct: 251 GQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTFTGVL 310
Query: 173 SACTHN 178
+AC+H
Sbjct: 311 TACSHG 316
>gi|449434194|ref|XP_004134881.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 436
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 104/187 (55%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +K+ ++W ++S Y G V ARQ FD+MP RD W+AMI Y+ +R AL LF
Sbjct: 116 MPHKNSVTWNTMISGYSKAGDVHTARQLFDRMPSRDLASWSAMIAAYINNRNYRGALLLF 175
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDL--GEWIKTYIDKNKVKNDIFAGNALIDMYC 118
Q+M + I D+ SIL A++ +L L G+ + ++ KN+ + ++ G L+DMY
Sbjct: 176 QDMIINGINPDQMAAGSILNGCAHMGSLGLLAGKSVHGFVVKNRWELNLELGTVLVDMYA 235
Query: 119 ICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C ++ A +++ +WT +I GLA G +AL +F M ++P+E + G
Sbjct: 236 KCGFLKYACQIFNLMSERNVRTWTALICGLAHHGCCKEALVLFETMRHEGVEPNEFTFTG 295
Query: 171 VLSACTH 177
VLSAC H
Sbjct: 296 VLSACVH 302
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 62/163 (38%), Gaps = 38/163 (23%)
Query: 53 FREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNA 112
+AL + +M ++ D F+I+ +L A A+ L + + +I K +F +
Sbjct: 37 LHKALAFYSQMHRQSVPHDSFSILFMLKACASSNNLSILHHLHAHITKLGFTTHVFVATS 96
Query: 113 LIDMYCICADV-------EKAQKDKFSWTTMIVGLAISG--------------------- 144
L+ Y + + E K+ +W TMI G + +G
Sbjct: 97 LLHSYVLHSFQLARLVFDEMPHKNSVTWNTMISGYSKAGDVHTARQLFDRMPSRDLASWS 156
Query: 145 ----------NGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
N AL +F M+ I PD++A +L+ C H
Sbjct: 157 AMIAAYINNRNYRGALLLFQDMIINGINPDQMAAGSILNGCAH 199
>gi|341606425|gb|AEK83315.1| At3g62890-like protein [Capsella grandiflora]
Length = 183
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 101/165 (61%), Gaps = 14/165 (8%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+KD+ +W ++V+ Y G +D AR FD+MPER+ + W+ +I+GY +++EAL LF+E
Sbjct: 19 SKDLPAWNSVVNSYAKAGFLDDARXLFDEMPERNVISWSCLINGYFMRGKYKEALDLFRE 78
Query: 63 MQTSN-----IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
MQ + ++FT+ ++L+A L AL+ G+W+ YIDK++V+ DI G ALIDMY
Sbjct: 79 MQLPKPNEAFVKPNKFTLSTVLSACGRLGALEQGKWVHAYIDKHQVEXDIVLGTALIDMY 138
Query: 118 CICADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMF 153
C +E+A +KD +++ MI LA+ G D+ +F
Sbjct: 139 AKCGSLERAKRVFTALGSKKDVQAYSAMICCLAMYGLTDECFQLF 183
Score = 36.2 bits (82), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 13/86 (15%)
Query: 103 VKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFS 154
V D+ A N++++ Y ++ A +++ SW+ +I G + G +ALD+F
Sbjct: 18 VSKDLPAWNSVVNSYAKAGFLDDARXLFDEMPERNVISWSCLINGYFMRGKYKEALDLFR 77
Query: 155 QML-----RASIKPDEVAYVGVLSAC 175
+M A +KP++ VLSAC
Sbjct: 78 EMQLPKPNEAFVKPNKFTLSTVLSAC 103
>gi|302804045|ref|XP_002983775.1| hypothetical protein SELMODRAFT_118751 [Selaginella moellendorffii]
gi|300148612|gb|EFJ15271.1| hypothetical protein SELMODRAFT_118751 [Selaginella moellendorffii]
Length = 363
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 106/185 (57%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +K+V+SWTA+++ YI G + AR+ FD MP+R+ W AMI GY++ R +AL +F
Sbjct: 52 MPDKNVVSWTAMITGYIENGCLGEARRLFDAMPQRNVASWNAMISGYVKNGRGWDALEIF 111
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M + + ++ T +S + A A+L+AL G+ + I + + D + NAL+ MY C
Sbjct: 112 KLMDLTGMHPNDITFMSAIDACADLQALLEGQILHAEITASGTEPDAYLRNALLHMYGRC 171
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ A+ +D++SW MI A G+ ++L F++M I PD V +V VL
Sbjct: 172 GSLAMAESLFDDMPDRDRWSWNVMISSYAHGGHTRRSLAFFAEMALDGITPDGVTFVAVL 231
Query: 173 SACTH 177
AC+H
Sbjct: 232 GACSH 236
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 70/173 (40%), Gaps = 16/173 (9%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G + +A FD MP+RD W MI Y R +L F EM I
Sbjct: 163 ALLHMYGRCGSLAMAESLFDDMPDRDRWSWNVMISSYAHGGHTRRSLAFFAEMALDGITP 222
Query: 71 DEFTIVSILTARANLRALDLG-----EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK 125
D T V++L A ++ +DLG Y V +D++ LID+ +++
Sbjct: 223 DGVTFVAVLGACSHAGRVDLGCHYFVSMSTDYSMARDVDHDLYV--CLIDVLGRSGWIKE 280
Query: 126 A---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
A Q D +W T++ G G+ + +Q + D YV
Sbjct: 281 AEDLIANMPFQPDSVAWATLLGGYRNYGSLGRGAQQAAQCVFQLDPEDSAPYV 333
>gi|218196522|gb|EEC78949.1| hypothetical protein OsI_19398 [Oryza sativa Indica Group]
Length = 746
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 109/183 (59%), Gaps = 11/183 (6%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + +A++ Y G++ AR+ FD + ++D V W AMI GY + EA++LF M+
Sbjct: 288 DSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMR 347
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ + D+ T+ +L+A + + AL+LG + Y + + ++++ G AL+DMY C D++
Sbjct: 348 IAGMRPDKITLAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLD 407
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLR--ASIKPDEVAYVGVLSA 174
KA K+ SW +I GLA +G GD+A+ F Q++R +KPD++ ++GVLSA
Sbjct: 408 KAIEVFRKMPCKNVASWNALICGLAFNGRGDEAIQHF-QLMRNEEGLKPDDITFIGVLSA 466
Query: 175 CTH 177
C H
Sbjct: 467 CVH 469
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 85/161 (52%), Gaps = 9/161 (5%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
AR+ FD +P RD V W AM+ Y RV E +F++M + V+++ A
Sbjct: 206 ARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNAVTVAVVLAACR 265
Query: 85 LRA-LDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTT 135
+ L LG W++ + +++ D G+AL+ MY C ++ +A+ KD +W
Sbjct: 266 DQGDLVLGRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNA 325
Query: 136 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
MI G A +G ++A+ +F M A ++PD++ GVLSAC+
Sbjct: 326 MITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACS 366
>gi|345505212|gb|AEN99830.1| chlororespiratory reduction 4, partial [Brassica oleracea]
Length = 590
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 70/187 (37%), Positives = 103/187 (55%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV++W ++ Y G V +A+ FDQMP RD V + +M+ GY++ EAL +F
Sbjct: 263 MPRRDVVTWAIMIDGYGKLGLVHVAKTLFDQMPHRDVVAYNSMMSGYVQNRYHMEALEVF 322
Query: 61 QEMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
M+ S++ DE ++V +L+A A L L + YI + + G ALIDMY
Sbjct: 323 NHMEKESHLTPDETSLVIVLSAIAQLGRLSKAIDMHLYIVEKQFPLSGKLGVALIDMYSK 382
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C ++ A K W MI GLA+ G G+ A DM Q+ R SIKPD + +VGV
Sbjct: 383 CGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLFQIERRSIKPDHITFVGV 442
Query: 172 LSACTHN 178
L+AC+H+
Sbjct: 443 LNACSHS 449
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 53/184 (28%), Positives = 84/184 (45%), Gaps = 21/184 (11%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM- 63
D+ ++ YI G + ARQ FD+MPERD V + +MIDGY++ A LF M
Sbjct: 140 DLFLQNCLIGLYIKCGFLGFARQVFDRMPERDSVSYNSMIDGYVKCGLVESAGELFDLMP 199
Query: 64 -QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ N++ +++ RA+ +D+ E + D+ K D+ + N++I Y
Sbjct: 200 REKRNLITWN-SMIGGYAQRAD--GVDVAEKL---FDEMPEK-DLISWNSMIGGYVKHGR 252
Query: 123 VEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+E A+ +D +W MI G G A +F QM D VAY ++S
Sbjct: 253 IEDAKGLFNVMPRRDVVTWAIMIDGYGKLGLVHVAKTLFDQMPHR----DVVAYNSMMSG 308
Query: 175 CTHN 178
N
Sbjct: 309 YVQN 312
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 50/200 (25%), Positives = 85/200 (42%), Gaps = 48/200 (24%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMP--ERDYVLWTAMIDGYL-RVNRFREAL 57
M +D +S+ +++ Y+ G V+ A + FD MP +R+ + W +MI GY R + A
Sbjct: 167 MPERDSVSYNSMIDGYVKCGLVESAGELFDLMPREKRNLITWNSMIGGYAQRADGVDVAE 226
Query: 58 TLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEW---IKTYIDKNKVKN--------- 105
LF EM DL W I Y+ ++++
Sbjct: 227 KLFDEMPEK----------------------DLISWNSMIGGYVKHGRIEDAKGLFNVMP 264
Query: 106 --DIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQ 155
D+ +ID Y V A+ +D ++ +M+ G + +AL++F+
Sbjct: 265 RRDVVTWAIMIDGYGKLGLVHVAKTLFDQMPHRDVVAYNSMMSGYVQNRYHMEALEVFNH 324
Query: 156 MLRAS-IKPDEVAYVGVLSA 174
M + S + PDE + V VLSA
Sbjct: 325 MEKESHLTPDETSLVIVLSA 344
Score = 42.7 bits (99), Expect = 0.060, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 8/131 (6%)
Query: 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIK 95
D LW +I + R+AL L M S++ D+F++ L A + L + G +
Sbjct: 70 DPFLWNVVIKSHSHGVDPRKALFLLCLMLESSVPVDKFSLSLALKACSRLGFVKEGTQVH 129
Query: 96 TYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGD 147
++ K +D+F N LI +Y C + A ++D S+ +MI G G +
Sbjct: 130 GFLIKTGTWSDLFLQNCLIGLYIKCGFLGFARQVFDRMPERDSVSYNSMIDGYVKCGLVE 189
Query: 148 KALDMFSQMLR 158
A ++F M R
Sbjct: 190 SAGELFDLMPR 200
>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 630
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 106/187 (56%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + ++S TA+++ Y +G V+ AR FD+M ERD V W MIDGY + +AL LF
Sbjct: 185 MPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLF 244
Query: 61 QEMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
Q++ DE T+V+ L+A + + AL+ G WI +++ ++++ ++ ALIDMY
Sbjct: 245 QKLLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMYSK 304
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVG 170
C +E+A +KD +W MI G A+ G AL +F +M ++P ++ ++G
Sbjct: 305 CGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQPTDITFIG 364
Query: 171 VLSACTH 177
L AC H
Sbjct: 365 TLQACAH 371
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 83/202 (41%), Gaps = 46/202 (22%)
Query: 16 YINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFR-EALTLFQEMQTSNIMGDEFT 74
Y + G++ + F Q + D L+TA I+ +N + +A L+ ++ +S I +EFT
Sbjct: 72 YASHGKIRHSLALFHQTIDPDLFLFTAAIN-TASINGLKDQAFLLYVQLLSSQINPNEFT 130
Query: 75 IVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK------ 128
SIL + + G+ I T++ K + D + L+D+Y DV AQK
Sbjct: 131 FSSILKSCST----KSGKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMP 186
Query: 129 ---------------------------------DKFSWTTMIVGLAISGNGDKALDMFSQ 155
D SW MI G + G AL +F +
Sbjct: 187 ERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQK 246
Query: 156 MLR-ASIKPDEVAYVGVLSACT 176
+L KPDE+ V LSAC+
Sbjct: 247 LLADGKPKPDEITVVAALSACS 268
>gi|222631052|gb|EEE63184.1| hypothetical protein OsJ_17993 [Oryza sativa Japonica Group]
Length = 746
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 109/183 (59%), Gaps = 11/183 (6%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + +A++ Y G++ AR+ FD + ++D V W AMI GY + EA++LF M+
Sbjct: 288 DSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMR 347
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ + D+ T+ +L+A + + AL+LG + Y + + ++++ G AL+DMY C D++
Sbjct: 348 IAGMRPDKITLAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLD 407
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLR--ASIKPDEVAYVGVLSA 174
KA K+ SW +I GLA +G GD+A+ F Q++R +KPD++ ++GVLSA
Sbjct: 408 KAIEVFRKMPCKNVASWNALICGLAFNGRGDEAIQHF-QLMRNEEGLKPDDITFIGVLSA 466
Query: 175 CTH 177
C H
Sbjct: 467 CVH 469
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 85/161 (52%), Gaps = 9/161 (5%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
AR+ FD +P RD V W AM+ Y RV E +F++M + V+++ A
Sbjct: 206 ARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNVVTVAVVLAACR 265
Query: 85 LRA-LDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTT 135
+ L LG W++ + +++ D G+AL+ MY C ++ +A+ KD +W
Sbjct: 266 DQGDLVLGRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNA 325
Query: 136 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
MI G A +G ++A+ +F M A ++PD++ GVLSAC+
Sbjct: 326 MITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACS 366
>gi|255551961|ref|XP_002517025.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543660|gb|EEF45188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 640
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 102/186 (54%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ ++V SW I+ YI G VD AR FDQMPE++ V W+ MI GY + +L L+
Sbjct: 287 MQERNVASWVMIIDGYIKVGDVDAARSVFDQMPEKNLVAWSTMIGGYAKTGHPYSSLKLY 346
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ + I DE + I++A + L D E + + ++ +LIDMY C
Sbjct: 347 KTFKEQGIKPDETFALGIISACSQLGVPDTAESVICDFVGPSLFPNLQVVTSLIDMYAKC 406
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++E+A QKD ++T+I A G + A+ +FS+M +A+IKPD VA++GVL
Sbjct: 407 GNIERAVQVFEMVDQKDLHCYSTVITAFANHGLSEDAISLFSEMQKANIKPDGVAFLGVL 466
Query: 173 SACTHN 178
+AC H
Sbjct: 467 TACNHG 472
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 106/209 (50%), Gaps = 33/209 (15%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ +D +SW ++++ Y N G+VDIAR+ FD+M ER+ + WT+MI GY++ EA LF
Sbjct: 163 MEERDAVSWNSMITGYGNNGRVDIARKLFDRMEERNVISWTSMIQGYVKAGDLLEARVLF 222
Query: 61 QEMQTSN-----IMGDEFTIVSILTARANLRAL----DLGEW---------------IKT 96
+ M + +M + V L A NL L D+G W K
Sbjct: 223 ERMPEKDLASWKVMVSAYMSVGNLVAARNLFELMPIHDVGTWNLMISGCCKAGEMDAAKE 282
Query: 97 YIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDK 148
+ D+ + +N + + +ID Y DV+ A +K+ +W+TMI G A +G+
Sbjct: 283 FFDRMQERN-VASWVMIIDGYIKVGDVDAARSVFDQMPEKNLVAWSTMIGGYAKTGHPYS 341
Query: 149 ALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+L ++ IKPDE +G++SAC+
Sbjct: 342 SLKLYKTFKEQGIKPDETFALGIISACSQ 370
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 8/158 (5%)
Query: 7 ISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTS 66
++ ++ Y G V A + FD+ PE + LWTA+I G+ N++ A F +M
Sbjct: 37 LTLNKLLRLYSKFGAVSYAHKLFDETPEPNSFLWTALIHGFTENNQYENAFAFFIKMHRE 96
Query: 67 NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--- 123
NI+ FTI S+L A + L + G+ + + + D+ N +I+++ C ++
Sbjct: 97 NIVPLNFTIASVLKAVSRLGRIKDGDLVYGLAVRCGYEFDLVVKNVMIELFMRCGEMGSA 156
Query: 124 -----EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
E ++D SW +MI G +G D A +F +M
Sbjct: 157 RQMFDEMEERDAVSWNSMITGYGNNGRVDIARKLFDRM 194
>gi|218200771|gb|EEC83198.1| hypothetical protein OsI_28453 [Oryza sativa Indica Group]
Length = 639
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 58/140 (41%), Positives = 87/140 (62%), Gaps = 8/140 (5%)
Query: 46 GYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKN 105
G+L REAL LF MQ ++ D+ +V +L A A L L+ G+W+ Y+ N ++
Sbjct: 110 GFLLAGDGREALGLFARMQADGVIPDDTVLVGVLVACAQLGVLEQGKWVHGYLKANNIRI 169
Query: 106 DIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQML 157
+F G AL+DMY C +++ A +K+ +WTTMI GLA+ G G +AL++FSQM
Sbjct: 170 TVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQME 229
Query: 158 RASIKPDEVAYVGVLSACTH 177
R +KPD++A++G L ACTH
Sbjct: 230 RLGVKPDDIAFIGALCACTH 249
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 27/167 (16%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G++ +A + F M E++ + WT MI G R EAL LF +M+ +
Sbjct: 175 TALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVK 234
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
D+ + L A + +D G E + + K +K I ++D+
Sbjct: 235 PDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDL------------ 282
Query: 129 DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
LA +G ++A +M +M +KPD + + +++ C
Sbjct: 283 -----------LARNGLLNEAREMVEKM---PMKPDALIWGALMAGC 315
Score = 37.4 bits (85), Expect = 2.4, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 137 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+ G ++G+G +AL +F++M + PD+ VGVL AC
Sbjct: 108 LAGFLLAGDGREALGLFARMQADGVIPDDTVLVGVLVACAQ 148
>gi|356562121|ref|XP_003549322.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 921
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 103/181 (56%), Gaps = 8/181 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D ISWTA+++ + G +D ARQCFD MPER+ + W +M+ Y++ E + L+
Sbjct: 436 MPLRDTISWTAMITAFSQNGDIDRARQCFDMMPERNVITWNSMLSTYIQHGFSEEGMKLY 495
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M++ + D T + + A A+L + LG + +++ K + +D+ N+++ MY C
Sbjct: 496 VLMRSKAVKPDWVTFATSIRACADLATIKLGTQVVSHVTKFGLSSDVSVANSIVTMYSRC 555
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+++A+ K+ SW M+ A +G G+KA++ + MLR KPD ++YV VL
Sbjct: 556 GQIKEARKVFDSIHVKNLISWNAMMAAFAQNGLGNKAIETYEAMLRTECKPDHISYVAVL 615
Query: 173 S 173
S
Sbjct: 616 S 616
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 81/160 (50%), Gaps = 8/160 (5%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + ++ Y G + +AR+ F+ + E++ V WT I G + +AL LF +M+
Sbjct: 308 DAFLGSGLIDMYAKCGCLALARRVFNSLGEQNQVSWTCFISGVAQFGLGDDALALFNQMR 367
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
++++ DEFT+ +IL + GE + Y K+ + + + GNA+I MY C D E
Sbjct: 368 QASVVLDEFTLATILGVCSGQNYAASGELLHGYAIKSGMDSSVPVGNAIITMYARCGDTE 427
Query: 125 KAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQM 156
KA +D SWT MI + +G+ D+A F M
Sbjct: 428 KASLAFRSMPLRDTISWTAMITAFSQNGDIDRARQCFDMM 467
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 88/184 (47%), Gaps = 8/184 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+++ + W +++ Y A F +MPERD+V W +I + + L+ F
Sbjct: 203 IESPSLFCWNSMIYGYSQLYGPYEALHVFTRMPERDHVSWNTLISVFSQYGHGIRCLSTF 262
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM + T S+L+A A++ L G + I + + D F G+ LIDMY C
Sbjct: 263 VEMCNLGFKPNFMTYGSVLSACASISDLKWGAHLHARILRMEHSLDAFLGSGLIDMYAKC 322
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ A ++++ SWT I G+A G GD AL +F+QM +AS+ DE +L
Sbjct: 323 GCLALARRVFNSLGEQNQVSWTCFISGVAQFGLGDDALALFNQMRQASVVLDEFTLATIL 382
Query: 173 SACT 176
C+
Sbjct: 383 GVCS 386
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 84/218 (38%), Gaps = 45/218 (20%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMP--ERDYVLWTAMIDGYLRVNRFREALTLF 60
+ ++ +W ++ + + G++ A FD+MP RD V WT MI GY + ++ F
Sbjct: 67 HANIFTWNTMLHAFFDSGRMREAENLFDEMPLIVRDSVSWTTMISGYCQNGLPGHSIKTF 126
Query: 61 QEM---QTSNIMG-DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116
M +I D F+ + A L + L + ++ K + N+L+DM
Sbjct: 127 MSMLRDSNHDIQNCDPFSYTCTMKACGCLASTRLALQLHAHVIKLHLGAQTCIQNSLVDM 186
Query: 117 YCICADVEKA---------------------------------------QKDKFSWTTMI 137
Y C + A ++D SW T+I
Sbjct: 187 YIKCGAITLAETIFLNIESPSLFCWNSMIYGYSQLYGPYEALHVFTRMPERDHVSWNTLI 246
Query: 138 VGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ G+G + L F +M KP+ + Y VLSAC
Sbjct: 247 SVFSQYGHGIRCLSTFVEMCNLGFKPNFMTYGSVLSAC 284
>gi|356518597|ref|XP_003527965.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g21470-like [Glycine max]
Length = 535
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 101/185 (54%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ W++++ Y +G V A FD +P R+ +W +MI GY++ +AL F
Sbjct: 202 MPERNCFVWSSMIHGYFKKGNVTEAAAVFDWVPVRNLEIWNSMIAGYVQNGFGEKALLAF 261
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M DEFT+VS+L+A A L LD+G+ I I+ + + F + L+DMY C
Sbjct: 262 EGMGAEGFEPDEFTVVSVLSACAQLGHLDVGKQIHHMIEHKGIVVNPFVLSGLVDMYAKC 321
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
D+ A +K+ F W MI G AI+G + L+ F +M ++I+PD + ++ VL
Sbjct: 322 GDLVNARLVFEGFTEKNIFCWNAMISGFAINGKCSEVLEFFGRMEESNIRPDGITFLTVL 381
Query: 173 SACTH 177
SAC H
Sbjct: 382 SACAH 386
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 89/207 (42%), Gaps = 39/207 (18%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DVI TA+++ Y G V AR FD MPER+ V W AMI GYLR A +F++MQ
Sbjct: 80 DVIIGTALLTTYSKCGVVRDARNLFDTMPERNVVTWNAMISGYLRNGDTESAYLVFEKMQ 139
Query: 65 T------SNIMGDEFTIVSILTARANLRALD---------------------LGEW-IKT 96
S ++G I TAR R D +GE
Sbjct: 140 GKTQVTWSQMIGGFARNGDIATAR---RLFDEVPHELKNVVTWTVMVDGYARIGEMEAAR 196
Query: 97 YIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDK 148
+ + + + F +++I Y +V +A ++ W +MI G +G G+K
Sbjct: 197 EVFEMMPERNCFVWSSMIHGYFKKGNVTEAAAVFDWVPVRNLEIWNSMIAGYVQNGFGEK 256
Query: 149 ALDMFSQMLRASIKPDEVAYVGVLSAC 175
AL F M +PDE V VLSAC
Sbjct: 257 ALLAFEGMGAEGFEPDEFTVVSVLSAC 283
>gi|297849216|ref|XP_002892489.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338331|gb|EFH68748.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1014
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 102/187 (54%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+ W +V + + G V F QM ER V W +MI + R REAL LF
Sbjct: 685 MPERNVVVWNLMVRGFCDSGDVQRGLSFFKQMSERSIVSWNSMISSLSKCGRDREALELF 744
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK-VKNDIFAGNALIDMYCI 119
EM DE T+V++L A+L LD G+WI + + N +K+ I GNAL+D YC
Sbjct: 745 CEMIDQGFDPDEATVVTMLPISASLGVLDTGKWIHSTAESNGLIKDFITVGNALVDFYCK 804
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVG 170
D+E A +++ SW TMI G A++G G+ +D+F M+ + P+E ++G
Sbjct: 805 SGDLEAATAIFRKMQRRNVVSWNTMISGSAVNGKGESGIDLFDAMIEEGKVAPNEATFLG 864
Query: 171 VLSACTH 177
VL+ C++
Sbjct: 865 VLACCSY 871
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 8/130 (6%)
Query: 40 WTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYID 99
W +L + ++L+ F M++ I DE+T +L + ++L L G+ + +
Sbjct: 592 WLPANQRHLHMAAGPKSLSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLRFGKCVHGEVI 651
Query: 100 KNKVKNDIFAGNALIDMYCICADVEKAQK--DKFS------WTTMIVGLAISGNGDKALD 151
+ ++++Y + AQK D+ W M+ G SG+ + L
Sbjct: 652 RTGFHRLGKVRIGVVELYTSGGRMGDAQKVFDEMPERNVVVWNLMVRGFCDSGDVQRGLS 711
Query: 152 MFSQMLRASI 161
F QM SI
Sbjct: 712 FFKQMSERSI 721
>gi|115463111|ref|NP_001055155.1| Os05g0307200 [Oryza sativa Japonica Group]
gi|113578706|dbj|BAF17069.1| Os05g0307200 [Oryza sativa Japonica Group]
Length = 767
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 109/183 (59%), Gaps = 11/183 (6%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + +A++ Y G++ AR+ FD + ++D V W AMI GY + EA++LF M+
Sbjct: 288 DSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMR 347
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ + D+ T+ +L+A + + AL+LG + Y + + ++++ G AL+DMY C D++
Sbjct: 348 IAGMRPDKITLAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLD 407
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLR--ASIKPDEVAYVGVLSA 174
KA K+ SW +I GLA +G GD+A+ F Q++R +KPD++ ++GVLSA
Sbjct: 408 KAIEVFRKMPCKNVASWNALICGLAFNGRGDEAIQHF-QLMRNEEGLKPDDITFIGVLSA 466
Query: 175 CTH 177
C H
Sbjct: 467 CVH 469
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 85/161 (52%), Gaps = 9/161 (5%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
AR+ FD +P RD V W AM+ Y RV E +F++M + V+++ A
Sbjct: 206 ARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNVVTVAVVLAACR 265
Query: 85 LRA-LDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTT 135
+ L LG W++ + +++ D G+AL+ MY C ++ +A+ KD +W
Sbjct: 266 DQGDLVLGRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNA 325
Query: 136 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
MI G A +G ++A+ +F M A ++PD++ GVLSAC+
Sbjct: 326 MITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACS 366
>gi|341606397|gb|AEK83301.1| At3g62890-like protein [Capsella grandiflora]
gi|341606419|gb|AEK83312.1| At3g62890-like protein [Capsella grandiflora]
gi|341606421|gb|AEK83313.1| At3g62890-like protein [Capsella grandiflora]
gi|341606423|gb|AEK83314.1| At3g62890-like protein [Capsella grandiflora]
gi|341606427|gb|AEK83316.1| At3g62890-like protein [Capsella grandiflora]
gi|341606431|gb|AEK83318.1| At3g62890-like protein [Capsella grandiflora]
gi|341606433|gb|AEK83319.1| At3g62890-like protein [Capsella grandiflora]
gi|341606435|gb|AEK83320.1| At3g62890-like protein [Capsella grandiflora]
gi|341606437|gb|AEK83321.1| At3g62890-like protein [Capsella grandiflora]
gi|341606449|gb|AEK83327.1| At3g62890-like protein [Capsella grandiflora]
gi|341606451|gb|AEK83328.1| At3g62890-like protein [Capsella grandiflora]
gi|341606455|gb|AEK83330.1| At3g62890-like protein [Capsella grandiflora]
gi|341606457|gb|AEK83331.1| At3g62890-like protein [Capsella grandiflora]
gi|341606459|gb|AEK83332.1| At3g62890-like protein [Capsella grandiflora]
gi|341606463|gb|AEK83334.1| At3g62890-like protein [Capsella grandiflora]
gi|341606465|gb|AEK83335.1| At3g62890-like protein [Capsella grandiflora]
gi|341606467|gb|AEK83336.1| At3g62890-like protein [Capsella grandiflora]
gi|341606469|gb|AEK83337.1| At3g62890-like protein [Capsella grandiflora]
gi|341606471|gb|AEK83338.1| At3g62890-like protein [Capsella grandiflora]
gi|341606473|gb|AEK83339.1| At3g62890-like protein [Capsella grandiflora]
gi|341606477|gb|AEK83341.1| At3g62890-like protein [Capsella grandiflora]
gi|341606479|gb|AEK83342.1| At3g62890-like protein [Capsella grandiflora]
gi|341606481|gb|AEK83343.1| At3g62890-like protein [Capsella grandiflora]
gi|341606483|gb|AEK83344.1| At3g62890-like protein [Capsella grandiflora]
gi|341606485|gb|AEK83345.1| At3g62890-like protein [Capsella grandiflora]
gi|341606487|gb|AEK83346.1| At3g62890-like protein [Capsella grandiflora]
gi|341606489|gb|AEK83347.1| At3g62890-like protein [Capsella grandiflora]
gi|341606491|gb|AEK83348.1| At3g62890-like protein [Capsella grandiflora]
gi|341606493|gb|AEK83349.1| At3g62890-like protein [Capsella grandiflora]
gi|341606495|gb|AEK83350.1| At3g62890-like protein [Capsella grandiflora]
gi|341606497|gb|AEK83351.1| At3g62890-like protein [Capsella grandiflora]
gi|341606501|gb|AEK83353.1| At3g62890-like protein [Capsella grandiflora]
gi|341606503|gb|AEK83354.1| At3g62890-like protein [Capsella grandiflora]
gi|341606505|gb|AEK83355.1| At3g62890-like protein [Capsella grandiflora]
gi|341606507|gb|AEK83356.1| At3g62890-like protein [Capsella grandiflora]
gi|341606509|gb|AEK83357.1| At3g62890-like protein [Capsella grandiflora]
gi|399107028|gb|AFP20302.1| At3g62890-like protein, partial [Capsella grandiflora]
gi|399107030|gb|AFP20303.1| At3g62890-like protein, partial [Capsella grandiflora]
gi|399107032|gb|AFP20304.1| At3g62890-like protein, partial [Capsella grandiflora]
Length = 183
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 102/165 (61%), Gaps = 14/165 (8%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+KD+ +W ++V+ Y G +D AR+ FD+MPER+ + W+ +I+GY +++EAL LF+E
Sbjct: 19 SKDLPAWNSVVNSYAKAGFLDDARKLFDEMPERNVISWSCLINGYFMRGKYKEALDLFRE 78
Query: 63 MQTSN-----IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
MQ + ++FT+ ++L+A L AL+ G+W+ YIDK++V+ DI G ALIDMY
Sbjct: 79 MQLPKPNEAFVKPNKFTLSTVLSACGRLGALEQGKWVHAYIDKHQVEIDIVLGTALIDMY 138
Query: 118 CICADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMF 153
C +E+A +KD +++ MI LA+ G D+ +F
Sbjct: 139 AKCGSLERAKRVFTALGSKKDVQAYSAMICCLAMYGLTDECFQLF 183
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 13/86 (15%)
Query: 103 VKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFS 154
V D+ A N++++ Y ++ A+K + SW+ +I G + G +ALD+F
Sbjct: 18 VSKDLPAWNSVVNSYAKAGFLDDARKLFDEMPERNVISWSCLINGYFMRGKYKEALDLFR 77
Query: 155 QML-----RASIKPDEVAYVGVLSAC 175
+M A +KP++ VLSAC
Sbjct: 78 EMQLPKPNEAFVKPNKFTLSTVLSAC 103
>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 687
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 105/191 (54%), Gaps = 14/191 (7%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V+S T++VS Y +V +AR F M +D + W A+I G + EAL LF
Sbjct: 314 MPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILF 373
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVK------NDIFAGNALI 114
+ ++ ++ +T ++L A ANL L LG +++ K+ + +D+F GN+LI
Sbjct: 374 RLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLI 433
Query: 115 DMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 166
DMY C VE +KD SW MIVG A +G G+KAL++F +ML + PD V
Sbjct: 434 DMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHV 493
Query: 167 AYVGVLSACTH 177
+GVL AC+H
Sbjct: 494 TMIGVLCACSH 504
Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 103/184 (55%), Gaps = 8/184 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ SW +I+ + G +D A F++MP+ D W +MI G+ + RF EAL F
Sbjct: 80 MLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYF 139
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M + +E++ S L+A A L+ L LG I + + ++ +D++ G+AL+DMY C
Sbjct: 140 AQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKC 199
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VE AQ + + SW ++I +G D+AL +F +M++ ++PDEV V+
Sbjct: 200 GRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVV 259
Query: 173 SACT 176
SAC
Sbjct: 260 SACA 263
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 96/212 (45%), Gaps = 40/212 (18%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV +A+V Y G+V+ A+ FD+M R V W ++I Y + EAL +F EM
Sbjct: 185 DVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMI 244
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK-NKVKNDIFAGNALIDMYCICADV 123
+ DE T+ S+++A A + A+ G+ I + K ++ +ND+ GNAL+DMY C +
Sbjct: 245 KCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRI 304
Query: 124 EKAQ---------------------------------------KDKFSWTTMIVGLAISG 144
+A+ KD +W +I G +G
Sbjct: 305 NEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNG 364
Query: 145 NGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
++AL +F + R S+ P + +L+AC
Sbjct: 365 ENEEALILFRLLKRESVWPTHYTFGNLLNACA 396
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 81/174 (46%), Gaps = 25/174 (14%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
++ DV +++ Y+ G V+ + F M E+D V W AMI GY + +AL +F
Sbjct: 422 EDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFC 481
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
+M S D T++ +L A ++ LD G + Y + A + L+ +
Sbjct: 482 KMLESGEAPDHVTMIGVLCACSHAGLLDEGRY---YF------RSMTAQHGLMPL----- 527
Query: 122 DVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
K +T M+ L +G ++A ++ +M S++PD + + +L+AC
Sbjct: 528 --------KDHYTCMVDLLGRAGYLEEAKNLIEEM---SMQPDAIVWGSLLAAC 570
>gi|357507465|ref|XP_003624021.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499036|gb|AES80239.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 632
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 106/186 (56%), Gaps = 10/186 (5%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
K + + W A++S Y G + A+ FD+MP+RD V W +MI GY + +A+ LF+
Sbjct: 318 KYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFE 377
Query: 62 EMQTS--NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
EM +S + DE T+VS+ +A +L L LG W + + N ++ I N+LI+MY
Sbjct: 378 EMISSEDSRKPDEVTMVSVFSACGHLGELGLGNWAVSILKVNHIQISISVYNSLINMYSR 437
Query: 120 CADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C + E A +D S+ T+I G A G+G +++++ S+M I+PD + Y+ +
Sbjct: 438 CGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLSKMKEDGIEPDRITYIAI 497
Query: 172 LSACTH 177
L+AC+H
Sbjct: 498 LTACSH 503
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 46/221 (20%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+++VI+WT +++ + +G + AR FD+MPER V W AM+ GY + E + LF +
Sbjct: 182 SRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFND 241
Query: 63 M-QTSNIMGDEFTIVSILTARANLRALDLGEWI-KTYIDKNKVKNDIFAGNALIDMYCIC 120
M N+ DE T +++++ ++L L E I + DK + + F AL+DM+ C
Sbjct: 242 MLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKC 301
Query: 121 ADVEKA------------------------------------------QKDKFSWTTMIV 138
++E A Q+D SW +MI
Sbjct: 302 GNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIA 361
Query: 139 GLAISGNGDKALDMFSQMLRA--SIKPDEVAYVGVLSACTH 177
G +G KA+ +F +M+ + S KPDEV V V SAC H
Sbjct: 362 GYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGH 402
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 28/167 (16%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
I+ Y G ++ AR+ FD+MP+R W MI GY + EA TLF M I
Sbjct: 124 GILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEISR 183
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDK 130
+ T +++T A L + Y DK ++
Sbjct: 184 NVITWTTMITGHAKKGNLKTA---RMYFDK------------------------MPERSV 216
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGVLSACT 176
SW M+ G A G ++ + +F+ ML +++PDE + V+S+C+
Sbjct: 217 VSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCS 263
>gi|124360491|gb|ABN08501.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 575
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 106/186 (56%), Gaps = 10/186 (5%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
K + + W A++S Y G + A+ FD+MP+RD V W +MI GY + +A+ LF+
Sbjct: 261 KYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFE 320
Query: 62 EMQTS--NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
EM +S + DE T+VS+ +A +L L LG W + + N ++ I N+LI+MY
Sbjct: 321 EMISSEDSRKPDEVTMVSVFSACGHLGELGLGNWAVSILKVNHIQISISVYNSLINMYSR 380
Query: 120 CADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C + E A +D S+ T+I G A G+G +++++ S+M I+PD + Y+ +
Sbjct: 381 CGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLSKMKEDGIEPDRITYIAI 440
Query: 172 LSACTH 177
L+AC+H
Sbjct: 441 LTACSH 446
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 46/221 (20%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+++VI+WT +++ + +G + AR FD+MPER V W AM+ GY + E + LF +
Sbjct: 125 SRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFND 184
Query: 63 M-QTSNIMGDEFTIVSILTARANLRALDLGEWI-KTYIDKNKVKNDIFAGNALIDMYCIC 120
M N+ DE T +++++ ++L L E I + DK + + F AL+DM+ C
Sbjct: 185 MLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKC 244
Query: 121 ADVEKA------------------------------------------QKDKFSWTTMIV 138
++E A Q+D SW +MI
Sbjct: 245 GNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIA 304
Query: 139 GLAISGNGDKALDMFSQMLRA--SIKPDEVAYVGVLSACTH 177
G +G KA+ +F +M+ + S KPDEV V V SAC H
Sbjct: 305 GYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGH 345
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 28/167 (16%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
I+ Y G ++ AR+ FD+MP+R W MI GY + EA TLF M I
Sbjct: 67 GILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEISR 126
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDK 130
+ T +++T A L + Y DK ++
Sbjct: 127 NVITWTTMITGHAKKGNLKTA---RMYFDK------------------------MPERSV 159
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGVLSACT 176
SW M+ G A G ++ + +F+ ML +++PDE + V+S+C+
Sbjct: 160 VSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCS 206
>gi|357140545|ref|XP_003571826.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Brachypodium distachyon]
Length = 489
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 104/192 (54%), Gaps = 14/192 (7%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ + +SW A++ Y + AR+ FD+MP RD V W+AMIDG ++ +REAL LF
Sbjct: 122 IPRPNPVSWNALLDGYAKCRDLSAAREVFDRMPHRDVVSWSAMIDGCVKCGEYREALALF 181
Query: 61 QEMQTS----NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116
+ M+ + + ++ T++S+L A A+L L G + Y+ + ++ +L+DM
Sbjct: 182 EMMEAAATGHGVRANDVTMISMLGACAHLGDLRRGRQMHRYLQERGFLLNLRLATSLVDM 241
Query: 117 YCICADVEK----------AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 166
Y C + + A D W MI GLA+ G G + +++F +M + + PDE+
Sbjct: 242 YAKCGAISEALEVFRAVPVASTDVLMWNAMIGGLAVHGMGMETVELFQEMQHSGVVPDEI 301
Query: 167 AYVGVLSACTHN 178
Y+G+LSAC H
Sbjct: 302 TYLGLLSACVHG 313
>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
Length = 560
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 116/200 (58%), Gaps = 26/200 (13%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SWTA+++ Y + + AR+ FD+MPE++ V W A+I GY++ R A +F
Sbjct: 232 MGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMF 291
Query: 61 QEMQ-------------TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDI 107
EM + N+ DEF +VS+++A + + +L+L +W+ Y+ K+ + D+
Sbjct: 292 DEMPHRNRDVVAWSALISGNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSI--DV 349
Query: 108 FAGN---ALIDMYCICADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQM 156
+ ALIDM C +++A K D S+ +M+ GL+I G G +A+ +FS+M
Sbjct: 350 HRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRM 409
Query: 157 LRASIKPDEVAYVGVLSACT 176
L + PD+VA+ +L+AC+
Sbjct: 410 LNEGLTPDDVAFTVILTACS 429
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 79/201 (39%), Gaps = 52/201 (25%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88
F+ + VLW I GY ++LF M+ S+ + D+FT S++ A + + +
Sbjct: 128 FNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGV 187
Query: 89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKFSWTTMIVGL 140
G + V D+F +LID+Y C ++ E +++ SWT MI G
Sbjct: 188 KEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGY 247
Query: 141 A--------------------------ISGN---GD--KALDMFSQM------------- 156
A ISG GD A MF +M
Sbjct: 248 ASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNRDVVAWSAL 307
Query: 157 LRASIKPDEVAYVGVLSACTH 177
+ ++KPDE V ++SAC+
Sbjct: 308 ISGNVKPDEFIMVSLMSACSQ 328
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 63/156 (40%), Gaps = 25/156 (16%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G +D A + F++MP+RD + + +M+ G +A++LF M + D+ IL
Sbjct: 366 GSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVIL 425
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVG 139
TA + +D G + Y + K I D Y D+
Sbjct: 426 TACSRAGLVDEGCY---YFESMKTDYSIVPSP---DHYACMVDL---------------- 463
Query: 140 LAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
L +G +A ++ M ++P A+ +L AC
Sbjct: 464 LGRAGRLKEAYELLKSM---PVEPHAGAWGALLGAC 496
>gi|357142899|ref|XP_003572730.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Brachypodium distachyon]
Length = 497
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 110/187 (58%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW A++ Y + G + AR+ FD M R+ W++M+ G ++ + EAL +F
Sbjct: 170 MPERNVVSWNAMLGAYASAGMLSEARKLFDGMHSRNAATWSSMVTGLVQSDHCEEALRVF 229
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKN-DIFAGNALIDMYCI 119
+M ++ +E +VS+++A A LR+L+ G W+ Y+ + + + A++DMY
Sbjct: 230 SDMVARGVVPNESILVSVISACAQLRSLEHGVWVHAYVKRELHGSMSVILATAIVDMYGK 289
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C + A ++ +SW +MI GLA++G +AL +F +M A ++P+++ ++G+
Sbjct: 290 CGCIHNAIRVFAAMPVRNIYSWNSMITGLAMNGREMQALSLFWKMQMAGVQPNDITFIGL 349
Query: 172 LSACTHN 178
L AC+H+
Sbjct: 350 LGACSHS 356
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
VI TAIV Y G + A + F MP R+ W +MI G R +AL+LF +MQ
Sbjct: 276 SVILATAIVDMYGKCGCIHNAIRVFAAMPVRNIYSWNSMITGLAMNGREMQALSLFWKMQ 335
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ + ++ T + +L A ++ +D G W+ N++ ND F + + Y + D+
Sbjct: 336 MAGVQPNDITFIGLLGACSHSGLVDEGRWL-----FNRMVND-FGIQPVPEHYGLMVDL 388
>gi|356562443|ref|XP_003549481.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 836
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 103/181 (56%), Gaps = 8/181 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D ISWTA+++ + G +D ARQCFD MPER+ + W +M+ Y++ E + L+
Sbjct: 436 MPLRDTISWTAMITAFSQNGDIDRARQCFDMMPERNVITWNSMLSTYIQHGFSEEGMKLY 495
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M++ + D T + + A A+L + LG + +++ K + +D+ N+++ MY C
Sbjct: 496 VLMRSKAVKPDWVTFATSIRACADLATIKLGTQVVSHVTKFGLSSDVSVANSIVTMYSRC 555
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+++A+ K+ SW M+ A +G G+KA++ + MLR KPD ++YV VL
Sbjct: 556 GQIKEARKVFDSIHVKNLISWNAMMAAFAQNGLGNKAIETYEDMLRTECKPDHISYVAVL 615
Query: 173 S 173
S
Sbjct: 616 S 616
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 8/160 (5%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + ++ Y G + +AR+ F+ + E++ V WT +I G + +AL LF +M+
Sbjct: 308 DAFLGSGLIDMYAKCGCLALARRVFNSLGEQNQVSWTCLISGVAQFGLRDDALALFNQMR 367
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
++++ DEFT+ +IL + GE + Y K+ + + + GNA+I MY C D E
Sbjct: 368 QASVVLDEFTLATILGVCSGQNYAATGELLHGYAIKSGMDSFVPVGNAIITMYARCGDTE 427
Query: 125 KAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQM 156
KA +D SWT MI + +G+ D+A F M
Sbjct: 428 KASLAFRSMPLRDTISWTAMITAFSQNGDIDRARQCFDMM 467
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 8/184 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+++ + W +++ Y A F +MPERD+V W +I + + L+ F
Sbjct: 203 IESPSLFCWNSMIYGYSQLYGPYEALHVFTRMPERDHVSWNTLISVFSQYGHGIRCLSTF 262
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM + T S+L+A A++ L G + I + + D F G+ LIDMY C
Sbjct: 263 VEMCNLGFKPNFMTYGSVLSACASISDLKWGAHLHARILRMEHSLDAFLGSGLIDMYAKC 322
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ A ++++ SWT +I G+A G D AL +F+QM +AS+ DE +L
Sbjct: 323 GCLALARRVFNSLGEQNQVSWTCLISGVAQFGLRDDALALFNQMRQASVVLDEFTLATIL 382
Query: 173 SACT 176
C+
Sbjct: 383 GVCS 386
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 83/218 (38%), Gaps = 45/218 (20%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLF 60
+ ++ +W ++ + + G++ A FD+MP RD V WT MI GY + ++ F
Sbjct: 67 HANIFTWNTMLHAFFDSGRMREAENLFDEMPHIVRDSVSWTTMISGYCQNGLPAHSIKTF 126
Query: 61 QEM---QTSNIMG-DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116
M +I D F+ + A L + + ++ K + N+L+DM
Sbjct: 127 MSMLRDSNHDIQNCDPFSYTCTMKACGCLASTRFALQLHAHVIKLHLGAQTCIQNSLVDM 186
Query: 117 YCICADVEKA---------------------------------------QKDKFSWTTMI 137
Y C + A ++D SW T+I
Sbjct: 187 YIKCGAITLAETVFLNIESPSLFCWNSMIYGYSQLYGPYEALHVFTRMPERDHVSWNTLI 246
Query: 138 VGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ G+G + L F +M KP+ + Y VLSAC
Sbjct: 247 SVFSQYGHGIRCLSTFVEMCNLGFKPNFMTYGSVLSAC 284
>gi|334184919|ref|NP_182060.2| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
gi|218546767|sp|O22137.2|PP202_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g45350, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 4; Flags: Precursor
gi|330255448|gb|AEC10542.1| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
Length = 613
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 104/187 (55%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV++W ++ Y G V A+ FDQMP RD V + +M+ GY++ EAL +F
Sbjct: 278 MPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIF 337
Query: 61 QEMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+M+ S+++ D+ T+V +L A A L L + YI + + G ALIDMY
Sbjct: 338 SDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSK 397
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C ++ A K W MI GLAI G G+ A DM Q+ R S+KPD++ +VGV
Sbjct: 398 CGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGV 457
Query: 172 LSACTHN 178
L+AC+H+
Sbjct: 458 LNACSHS 464
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 33/176 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQ-VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTL 59
M+ K++ISW +++S Y VDIA + F MPE+D + W +MIDGY++ R +A L
Sbjct: 215 MEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGL 274
Query: 60 FQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
F M +++ W T ID + L D
Sbjct: 275 FDVMPRRDVV----------------------TW-ATMIDGYAKLGFVHHAKTLFD---- 307
Query: 120 CADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSA 174
+ +D ++ +M+ G + +AL++FS M + S + PD+ V VL A
Sbjct: 308 ----QMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPA 359
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 17/182 (9%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ ++ Y+ G + ++RQ FD+MP+RD V + +MIDGY++ A LF M
Sbjct: 155 DLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMP 214
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
M + + S+++ A G I + + + + D+ + N++ID Y +E
Sbjct: 215 ME--MKNLISWNSMISGYAQTSD---GVDIASKLFADMPEKDLISWNSMIDGYVKHGRIE 269
Query: 125 KAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A+ +D +W TMI G A G A +F QM D VAY +++
Sbjct: 270 DAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHR----DVVAYNSMMAGYV 325
Query: 177 HN 178
N
Sbjct: 326 QN 327
Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 35 RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWI 94
D LW A+I + R+AL L M + + D+F++ +L A + L + G I
Sbjct: 84 EDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQI 143
Query: 95 KTYIDKNKVKNDIFAGNALIDMY--CICADVEK------AQKDKFSWTTMIVGLAISGNG 146
++ K + +D+F N LI +Y C C + + ++D S+ +MI G G
Sbjct: 144 HGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLI 203
Query: 147 DKALDMFSQM 156
A ++F M
Sbjct: 204 VSARELFDLM 213
>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
[Vitis vinifera]
Length = 788
Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 102/185 (55%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD++SW +V+ Y GQ+D A + F++M E++ V W ++I G + + +AL F
Sbjct: 383 MVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSF 442
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M D+ T L++ A+L AL +G+ + + K+ D+F NALI MY C
Sbjct: 443 MLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKC 502
Query: 121 ADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ A+ D SW ++I A++GNG +AL +F +M + PDEV +VG+L
Sbjct: 503 GSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGIL 562
Query: 173 SACTH 177
SAC+H
Sbjct: 563 SACSH 567
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 88/185 (47%), Gaps = 16/185 (8%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+ ISWT +++ Y+ G++D ARQ +QMP R+ TAMI GY++ R +A +F
Sbjct: 290 MPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRMDDARQIF 349
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
++ +++ I AL ++ K VK DI + N ++ Y
Sbjct: 350 NQISIRDVVCWNTMIAGYSQCGRMDEAL--------HLFKQMVKKDIVSWNTMVASYAQV 401
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ A +K+ SW ++I GL +G+ AL F M KPD+ + L
Sbjct: 402 GQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGL 461
Query: 173 SACTH 177
S+C H
Sbjct: 462 SSCAH 466
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 84/164 (51%), Gaps = 16/164 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD++SW ++++ Y G++ + Q F++M ERD V W M+DG++ V + F
Sbjct: 166 MPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFF 225
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+++ N + + V++L A R + E + D+ ++N + A NA+I Y
Sbjct: 226 EKIPNPNTV----SWVTMLCGFA--RFGKIAE-ARRLFDQMPIRN-VVAWNAMIAAYVQN 277
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
V++A +K+ SWTT+I G G D+A + +QM
Sbjct: 278 CHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQM 321
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 15/164 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +K+ ++ +++S + G++ ARQ FD MP+R+ V W +MI YL +R EA LF
Sbjct: 41 MTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLF 100
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M T ++ I +A +L + K + NA++ Y
Sbjct: 101 DKMPTRDLYSWTLMITCYTRNGELAKARNLFNLL-------PYKWNPVCCNAMVAGYAKN 153
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQM 156
++A+ KD SW +M+ G +G L F +M
Sbjct: 154 RQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEM 197
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ A+++ Y G + A F + D V W ++I Y REAL LF +M+
Sbjct: 488 DLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKME 547
Query: 65 TSNIMGDEFTIVSILTARANLRALDLG 91
+ DE T V IL+A +++ +D G
Sbjct: 548 VEGVAPDEVTFVGILSACSHVGLIDQG 574
>gi|341606391|gb|AEK83298.1| At3g62890-like protein [Capsella grandiflora]
gi|341606409|gb|AEK83307.1| At3g62890-like protein [Capsella grandiflora]
gi|341606411|gb|AEK83308.1| At3g62890-like protein [Capsella grandiflora]
Length = 183
Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 102/165 (61%), Gaps = 14/165 (8%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+KD+ +W ++V+ Y G +D AR+ FD+MPER+ + W+ +I+GY +++EAL LF+E
Sbjct: 19 SKDLPAWNSVVNSYAKAGFLDDARKLFDEMPERNVISWSCLINGYFMRGKYKEALDLFRE 78
Query: 63 MQTSN-----IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
MQ + ++FT+ ++L+A L AL+ G+W+ YIDK++V+ DI G ALIDMY
Sbjct: 79 MQLPKPNEAFVKPNKFTLSTVLSACGRLGALEQGKWVHXYIDKHQVEIDIVLGTALIDMY 138
Query: 118 CICADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMF 153
C +E+A +KD +++ MI LA+ G D+ +F
Sbjct: 139 AKCGSLERAKRVFTALGSKKDVQAYSAMICCLAMYGLTDECFQLF 183
Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 13/86 (15%)
Query: 103 VKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFS 154
V D+ A N++++ Y ++ A+K + SW+ +I G + G +ALD+F
Sbjct: 18 VSKDLPAWNSVVNSYAKAGFLDDARKLFDEMPERNVISWSCLINGYFMRGKYKEALDLFR 77
Query: 155 QML-----RASIKPDEVAYVGVLSAC 175
+M A +KP++ VLSAC
Sbjct: 78 EMQLPKPNEAFVKPNKFTLSTVLSAC 103
>gi|359488543|ref|XP_002278038.2| PREDICTED: uncharacterized protein LOC100244618 [Vitis vinifera]
Length = 1154
Score = 125 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 66/175 (37%), Positives = 108/175 (61%), Gaps = 9/175 (5%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A + Y G++D+AR+ F + ++D V WT+MI+ Y++ + AL LF++M+ I+
Sbjct: 701 AAMGMYARCGRIDVARRFFYGILDKDLVAWTSMIEAYVQADLPINALELFKQMKLLGIVP 760
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK-- 128
D T++S++ A +NL + L ++ I ++ KN I A+ID+Y C ++E A+K
Sbjct: 761 DSVTLLSLIHAVSNLASFQLARFVHGVITRSFFKNHIALDTAVIDLYVKCGNLEYARKCF 820
Query: 129 ------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+ SW+TMI G + G+G +AL +F QM +ASIKPD +A+V VLSAC+H
Sbjct: 821 DRMSARNLISWSTMISGYGMHGHGREALCLFDQM-KASIKPDHIAFVMVLSACSH 874
Score = 81.3 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 11/181 (6%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV ++++ Y G D +RQ F++MPER+ V W++M+ Y R+ E L LF M
Sbjct: 597 DVFVANSLMAMYGRFGCFDFSRQVFERMPERNVVSWSSMVGAYAHNGRYEEGLLLFWRML 656
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
I + +IV+ + R + ++ + ID N + +D NA + MY C ++
Sbjct: 657 NEGIAPNRGSIVNAMACIH--REHEADDFCRVVID-NGLDSDQSVQNAAMGMYARCGRID 713
Query: 125 KAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A+ KD +WT+MI + AL++F QM I PD V + ++ A +
Sbjct: 714 VARRFFYGILDKDLVAWTSMIEAYVQADLPINALELFKQMKLLGIVPDSVTLLSLIHAVS 773
Query: 177 H 177
+
Sbjct: 774 N 774
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 9/176 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T+++++Y + G + A F + LW +I + R +L L+ M I
Sbjct: 501 TSLIAQYASLGSISHAYALFSTSHSSNVFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQ 560
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI--CADVEK-- 125
FT +L A L +LG ++ ++D+F N+L+ MY C D +
Sbjct: 561 ATNFTFPFLLKACGCLADFELGARAHAHVVVFGYESDVFVANSLMAMYGRFGCFDFSRQV 620
Query: 126 ----AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+++ SW++M+ A +G ++ L +F +ML I P+ + V + AC H
Sbjct: 621 FERMPERNVVSWSSMVGAYAHNGRYEEGLLLFWRMLNEGIAPNRGSIVNAM-ACIH 675
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ Y+ G ++ AR+CFD+M R+ + W+ MI GY REAL LF +M+ S I
Sbjct: 801 TAVIDLYVKCGNLEYARKCFDRMSARNLISWSTMISGYGMHGHGREALCLFDQMKAS-IK 859
Query: 70 GDEFTIVSILTA 81
D V +L+A
Sbjct: 860 PDHIAFVMVLSA 871
>gi|347954512|gb|AEP33756.1| chloroplast biogenesis 19, partial [Raphanus sativus]
Length = 476
Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 102/194 (52%), Gaps = 22/194 (11%)
Query: 6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLR--------VNRF---- 53
V+ TAI+ Y R + AR FD+M + + V W MIDGY R +N F
Sbjct: 103 VMVGTAILGMYSKRRRFRKARLVFDRMGDXNSVTWNTMIDGYXRDLISXTXMINGFVKKG 162
Query: 54 --REALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGN 111
EAL F+EMQ S + D I++ L A NL AL G W+ Y+ KN++ N
Sbjct: 163 LNEEALAWFREMQVSGVEPDYVAIIAALAACTNLGALSFGLWVHRYVVSQDFKNNVRVSN 222
Query: 112 ALIDMYCICADVEKAQK--DKF------SWTTMIVGLAISGNGDKALDMFSQMLRASIKP 163
+LID+YC C VE A++ DK SW ++IVG A +G+ ++L F +M KP
Sbjct: 223 SLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGHAHESLVYFRKMQEERFKP 282
Query: 164 DEVAYVGVLSACTH 177
D V + G L+AC+H
Sbjct: 283 DAVTFTGALTACSH 296
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 28/169 (16%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y G V+ ARQ FD+M +R V W ++I G+ E+L F++MQ
Sbjct: 223 SLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGHAHESLVYFRKMQEERFKP 282
Query: 71 DEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
D T LTA +++ ++ G + + ++ I L+D+Y
Sbjct: 283 DAVTFTGALTACSHVGLVEEGVRYFEAMKRDYRISPRIEHYGCLVDLY------------ 330
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC-TH 177
+ +G + AL + M +KP+EV +L+AC TH
Sbjct: 331 -----------SRAGRLEDALKVVESM---PMKPNEVVIGSLLAACRTH 365
>gi|51535410|dbj|BAD37280.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125596587|gb|EAZ36367.1| hypothetical protein OsJ_20695 [Oryza sativa Japonica Group]
gi|218197849|gb|EEC80276.1| hypothetical protein OsI_22264 [Oryza sativa Indica Group]
Length = 517
Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 102/184 (55%), Gaps = 9/184 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+KD++ W ++ Y G+++ AR+ FD+ PE+D V W +I GY + AL +F E
Sbjct: 194 HKDIVCWNVMLGAYAKHGEMENARELFDRAPEKDVVSWNTIITGYAAQGMLKHALEVFDE 253
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYID-KNKVKNDIFAGNALIDMYCICA 121
M+ + DE TIVS+L+ AN LD G I + + + I GNAL+ MY C
Sbjct: 254 MRAAGWTPDEATIVSLLSCCANTGLLDAGRMIHHQLHLERRPWISIVVGNALVSMYAKCG 313
Query: 122 DVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
D+ A + D ++W ++I GLA G ++++ F +ML I P+E++++ VL
Sbjct: 314 DLHTAVEGFNTMKDTDVWTWNSVIGGLAFHGQAEQSVRFFKKMLEKRIHPNEISFLCVLG 373
Query: 174 ACTH 177
AC+H
Sbjct: 374 ACSH 377
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 9/146 (6%)
Query: 19 RGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-QTSNIMGDEFTIVS 77
RG++ AR+ FD +P D + AM+ GY +A +++ M + S + D FT
Sbjct: 46 RGRMGYARKVFDGIPRPDLFMHNAMVRGYAHAGAPGDAFAVYRRMTEASRLRPDAFTFCY 105
Query: 78 ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKD 129
+L A A L G + + K D + NALI+M+ C D+ E + D
Sbjct: 106 LLRACAGLPGSRAGRQVHGAVVKLGFLKDAYVRNALINMFAKCGDLRVASVLLDEAGEGD 165
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQ 155
+W+ +I G A G+ A MF +
Sbjct: 166 VVAWSAVIAGHAARGDMAAARKMFDE 191
>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
Length = 608
Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 106/186 (56%), Gaps = 14/186 (7%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV ++ Y + G +D+AR+ FD+MPER V W +MID +RV + AL LF++MQ
Sbjct: 166 DVYVNNGLIHFYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRVGEYDSALQLFRDMQ 225
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN---KVKNDIFAGNALIDMYCICA 121
S D +T+ S+L+A A L +L LG W ++ +N V D+ N+LI+MYC C
Sbjct: 226 KS-FEPDGYTMQSVLSACAGLGSLSLGTWSHVFLLRNCDVDVAMDVLIKNSLIEMYCKCG 284
Query: 122 DVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRA--SIKPDEVAYVGV 171
+ A++ D SW MI+G A G ++A++ F M++ ++KP+ V +V +
Sbjct: 285 SLRMAEQVFQGMRKHDLASWNAMILGFATHGKAEEAMNCFDCMVKEGKNVKPNSVTFVAL 344
Query: 172 LSACTH 177
L AC H
Sbjct: 345 LIACNH 350
>gi|341606403|gb|AEK83304.1| At3g62890-like protein [Capsella grandiflora]
gi|341606413|gb|AEK83309.1| At3g62890-like protein [Capsella grandiflora]
Length = 183
Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 101/165 (61%), Gaps = 14/165 (8%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+KD+ +W ++V Y G +D AR+ FD+MPER+ + W+ +I+GY +++EAL LF+E
Sbjct: 19 SKDLPAWNSVVBSYAKAGFLDDARKLFDEMPERNVISWSCLINGYFMRGKYKEALDLFRE 78
Query: 63 MQTSN-----IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
MQ + ++FT+ ++L+A L AL+ G+W+ YIDK++V+ DI G ALIDMY
Sbjct: 79 MQLPKPNEAFVKPNKFTLSTVLSACGRLGALEQGKWVHAYIDKHQVEIDIVLGTALIDMY 138
Query: 118 CICADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMF 153
C +E+A +KD +++ MI LA+ G D+ +F
Sbjct: 139 AKCGSLERAKRVFTALGSKKDVQAYSAMICCLAMYGLTDECFQLF 183
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 13/86 (15%)
Query: 103 VKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFS 154
V D+ A N+++B Y ++ A+K + SW+ +I G + G +ALD+F
Sbjct: 18 VSKDLPAWNSVVBSYAKAGFLDDARKLFDEMPERNVISWSCLINGYFMRGKYKEALDLFR 77
Query: 155 QML-----RASIKPDEVAYVGVLSAC 175
+M A +KP++ VLSAC
Sbjct: 78 EMQLPKPNEAFVKPNKFTLSTVLSAC 103
>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
Length = 1309
Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 97/176 (55%), Gaps = 8/176 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
A+V Y+ +++ AR FD+M ERD V WT MI GY + E+L LF++M+ ++
Sbjct: 199 AALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVV 258
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
D+ +V+++ A A L A+ I YI + K + D+ G A+IDMY C VE A
Sbjct: 259 PDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREI 318
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+K+ SW+ MI G G KALD+F ML + + PD++ +L AC+H
Sbjct: 319 FDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSH 374
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 96/176 (54%), Gaps = 8/176 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
A+V Y +++ AR FD+M ERD V WT MI GY E+L LF +M+ ++
Sbjct: 875 AALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVV 934
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
D+ +V+++ A A L A+ I YI + K + D+ G A+IDM+ C VE A
Sbjct: 935 PDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREI 994
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+K+ SW+ MI G G KALD+F MLR+ I P+++ V +L AC+H
Sbjct: 995 FDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSH 1050
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 8/181 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+++I +V Y +D A FD M RD V W+ M+ G+ +V + F+E+
Sbjct: 768 QNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFREL 827
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
D +T+ ++ A +L+ L +G I + K + D F AL+DMY C ++
Sbjct: 828 IRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREI 887
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E A ++D +WT MI G A GN +++L +F +M + PD+VA V V+ AC
Sbjct: 888 EDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFAC 947
Query: 176 T 176
Sbjct: 948 A 948
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 8/163 (4%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81
+D A FD M RD V W+ M+ G+ +V + F+E+ D +T+ ++ A
Sbjct: 110 LDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRA 169
Query: 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSW 133
+L+ L +G I + K + D F AL+DMY C ++E A ++D +W
Sbjct: 170 CRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTW 229
Query: 134 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
T MI G A G +++L +F +M + PD+VA V V+ AC
Sbjct: 230 TVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACA 272
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 28/176 (15%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DVI TA++ Y G V+ AR+ FD+M E++ + W+AMI Y + R+AL LF M
Sbjct: 295 DVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMML 354
Query: 65 TSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+S ++ D+ T+ S+L A ++ ++ G + + + V+ D+ ++D+
Sbjct: 355 SSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDL------- 407
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC-THN 178
L +G D+AL + M +I+ DE + L AC TH
Sbjct: 408 ----------------LGRAGRLDEALKLIKSM---TIEKDEGLWGAFLGACRTHK 444
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 28/176 (15%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DVI TA++ + G V+ AR+ FD+M E++ + W+AMI Y + R+AL LF M
Sbjct: 971 DVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMML 1030
Query: 65 TSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
S I+ ++ T+VS+L A ++ ++ G + + V+ D+ ++D+
Sbjct: 1031 RSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDL------- 1083
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC-THN 178
L +G D+AL + M + + DE + L AC TH
Sbjct: 1084 ----------------LGRAGRLDEALKLIXSM---TXEKDEGLWGAFLGACRTHK 1120
>gi|2583119|gb|AAB82628.1| hypothetical protein [Arabidopsis thaliana]
Length = 606
Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 104/187 (55%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV++W ++ Y G V A+ FDQMP RD V + +M+ GY++ EAL +F
Sbjct: 271 MPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIF 330
Query: 61 QEMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+M+ S+++ D+ T+V +L A A L L + YI + + G ALIDMY
Sbjct: 331 SDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSK 390
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C ++ A K W MI GLAI G G+ A DM Q+ R S+KPD++ +VGV
Sbjct: 391 CGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGV 450
Query: 172 LSACTHN 178
L+AC+H+
Sbjct: 451 LNACSHS 457
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 33/176 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQ-VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTL 59
M+ K++ISW +++S Y VDIA + F MPE+D + W +MIDGY++ R +A L
Sbjct: 208 MEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGL 267
Query: 60 FQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
F M +++ W T ID + L D
Sbjct: 268 FDVMPRRDVV----------------------TW-ATMIDGYAKLGFVHHAKTLFD---- 300
Query: 120 CADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSA 174
+ +D ++ +M+ G + +AL++FS M + S + PD+ V VL A
Sbjct: 301 ----QMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPA 352
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 17/182 (9%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ ++ Y+ G + ++RQ FD+MP+RD V + +MIDGY++ A LF M
Sbjct: 148 DLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMP 207
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
M + + S+++ A G I + + + + D+ + N++ID Y +E
Sbjct: 208 ME--MKNLISWNSMISGYAQTSD---GVDIASKLFADMPEKDLISWNSMIDGYVKHGRIE 262
Query: 125 KAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A+ +D +W TMI G A G A +F QM D VAY +++
Sbjct: 263 DAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHR----DVVAYNSMMAGYV 318
Query: 177 HN 178
N
Sbjct: 319 QN 320
Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 35 RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWI 94
D LW A+I + R+AL L M + + D+F++ +L A + L + G I
Sbjct: 77 EDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQI 136
Query: 95 KTYIDKNKVKNDIFAGNALIDMY--CICADVEK------AQKDKFSWTTMIVGLAISGNG 146
++ K + +D+F N LI +Y C C + + ++D S+ +MI G G
Sbjct: 137 HGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLI 196
Query: 147 DKALDMFSQM 156
A ++F M
Sbjct: 197 VSARELFDLM 206
>gi|341606405|gb|AEK83305.1| At3g62890-like protein [Capsella grandiflora]
Length = 183
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 101/165 (61%), Gaps = 14/165 (8%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+KD+ +W ++V Y G +D AR+ FD+MPER+ + W+ +I+GY +++EAL LF+E
Sbjct: 19 SKDLPAWNSVVXSYAKAGFLDDARKLFDEMPERNVISWSCLINGYFMRGKYKEALDLFRE 78
Query: 63 MQTSN-----IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
MQ + ++FT+ ++L+A L AL+ G+W+ YIDK++V+ DI G ALIDMY
Sbjct: 79 MQLPKPNEAFVKPNKFTLSTVLSACGRLGALEQGKWVHAYIDKHQVEIDIVLGTALIDMY 138
Query: 118 CICADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMF 153
C +E+A +KD +++ MI LA+ G D+ +F
Sbjct: 139 AKCGSLERAKRVFTALGSKKDVQAYSAMICCLAMYGLTDECFQLF 183
Score = 35.8 bits (81), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQML-----RASIKPDEVAYVGVLSAC 175
E +++ SW+ +I G + G +ALD+F +M A +KP++ VLSAC
Sbjct: 47 EMPERNVISWSCLINGYFMRGKYKEALDLFREMQLPKPNEAFVKPNKFTLSTVLSAC 103
>gi|46805412|dbj|BAD16914.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|215704291|dbj|BAG93131.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 527
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 101/186 (54%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + +++ ++S + G V A + FD MP D V WTA+IDG ++ R EA+ F
Sbjct: 165 MPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAIDCF 224
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M + D T++++++A A + AL LG W+ + + ++ ++ N+LIDMY C
Sbjct: 225 RAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLIDMYARC 284
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VE A ++ SW +MIVG A +G A++ F M R KPD V + GVL
Sbjct: 285 GQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTFTGVL 344
Query: 173 SACTHN 178
+AC+H
Sbjct: 345 TACSHG 350
>gi|255578965|ref|XP_002530335.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
gi|223530139|gb|EEF32051.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
Length = 1530
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 95/175 (54%), Gaps = 8/175 (4%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+V Y ++ A+ FD MP +D V WT MI GY +E+L LF ++ +
Sbjct: 1221 ALVDMYAKCKVIEDAKLLFDVMPSKDLVTWTVMIGGYAECGNAKESLVLFDHLREEGFVP 1280
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA---- 126
D+ +VSI+ A A L A++ ++ Y+++N+ D+ G A+IDMY C DV+ A
Sbjct: 1281 DKIAMVSIVNACAKLGAMNKARFVHEYVNRNRFSLDVILGTAMIDMYAKCGDVDSAREIF 1340
Query: 127 ----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
K+ SW+ MI G G KAL++F ML + I P+ + +V +L AC+H
Sbjct: 1341 DNMHHKNVISWSAMIAAYGYHGQGKKALELFPMMLSSGILPNNITFVSLLYACSH 1395
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 89/168 (52%), Gaps = 8/168 (4%)
Query: 16 YINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTI 75
Y++ + A FD+MP+++ V W+ MI G+++V F + F+E+ + + D +T+
Sbjct: 1125 YVHHKCLTDAYALFDEMPQKNPVSWSIMIGGFVKVGEFMQCYKTFKELIRNGVQPDNYTL 1184
Query: 76 VSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-------- 127
++ A + ALD+G I + K + D F AL+DMY C +E A+
Sbjct: 1185 PFVIKACRDTVALDMGRLIHCVVLKYGLHLDHFVCAALVDMYAKCKVIEDAKLLFDVMPS 1244
Query: 128 KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
KD +WT MI G A GN ++L +F + PD++A V +++AC
Sbjct: 1245 KDLVTWTVMIGGYAECGNAKESLVLFDHLREEGFVPDKIAMVSIVNAC 1292
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 74/143 (51%), Gaps = 10/143 (6%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DVI TA++ Y G VD AR+ FD M ++ + W+AMI Y + ++AL LF M
Sbjct: 1316 DVILGTAMIDMYAKCGDVDSAREIFDNMHHKNVISWSAMIAAYGYHGQGKKALELFPMML 1375
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYI-DKNKVKNDIFAGNALIDMYCICADV 123
+S I+ + T VS+L A ++ ++ G + + + + V+ DI ++D+ +
Sbjct: 1376 SSGILPNNITFVSLLYACSHAGLVEDGLTLLSLMWESFGVRPDIKHHTCMVDLLGRAGQL 1435
Query: 124 EKA---------QKDKFSWTTMI 137
+A +KD+ W++++
Sbjct: 1436 TEAFRFIENMTVEKDEGLWSSLL 1458
>gi|15228954|ref|NP_191214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180975|sp|Q9LXY5.1|PP284_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g56550
gi|7594533|emb|CAB88058.1| putative protein [Arabidopsis thaliana]
gi|91806586|gb|ABE66020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332646013|gb|AEE79534.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 581
Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats.
Identities = 58/181 (32%), Positives = 106/181 (58%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D I T++V Y G V+IA + FD+MP RD V W MI + V +AL++++ M
Sbjct: 141 DAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVGLHNQALSMYKRMG 200
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ GD +T+V++L++ A++ AL++G + + ++ +F NALIDMY C +E
Sbjct: 201 NEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCVFVSNALIDMYAKCGSLE 260
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A ++D +W +MI+G + G+G +A+ F +M+ + ++P+ + ++G+L C+
Sbjct: 261 NAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPNAITFLGLLLGCS 320
Query: 177 H 177
H
Sbjct: 321 H 321
>gi|224123708|ref|XP_002319146.1| predicted protein [Populus trichocarpa]
gi|222857522|gb|EEE95069.1| predicted protein [Populus trichocarpa]
Length = 337
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 108/190 (56%), Gaps = 12/190 (6%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V++W +++ + G+++ A FD+MPE++ V WT +IDGY+R N++ E L+LF
Sbjct: 18 MPKRNVVTWNVMITGLVKWGKLEFASSLFDEMPEKNVVSWTGIIDGYIRNNKYSEGLSLF 77
Query: 61 QEMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKN-DIFAGNALIDMYC 118
+ M I E TI++IL A +N+ L I Y +K DI N++ID Y
Sbjct: 78 RRMVVCEGIKPTEITILAILPAISNMGELKSCSLIHGYAEKRGFNAFDIRVANSIIDCYS 137
Query: 119 ICA----------DVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
C D+ +K+ SWT++I G A+ G +A++ F +M +A +KP+ V +
Sbjct: 138 KCGCIASAFKFFEDISVERKNLVSWTSIISGFAMHGMWKEAVEYFERMEKAGLKPNRVTF 197
Query: 169 VGVLSACTHN 178
+ VL+AC+H
Sbjct: 198 LSVLNACSHG 207
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 67/141 (47%), Gaps = 3/141 (2%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFD--QMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
D+ +I+ Y G + A + F+ + ++ V WT++I G+ ++EA+ F+
Sbjct: 125 DIRVANSIIDCYSKCGCIASAFKFFEDISVERKNLVSWTSIISGFAMHGMWKEAVEYFER 184
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
M+ + + + T +S+L A ++ +D G ++++ V DI ++DM
Sbjct: 185 MEKAGLKPNRVTFLSVLNACSHGGLVDEGLRCFYKMVNEHGVLPDIKHYGCVVDMLGRTG 244
Query: 122 DVEKAQKDKFSWTTMIVGLAI 142
+E+A+ + IV + I
Sbjct: 245 RLEEAENMALEIPSEIVNVVI 265
>gi|297599966|ref|NP_001048246.2| Os02g0769900 [Oryza sativa Japonica Group]
gi|46805413|dbj|BAD16915.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255671273|dbj|BAF10160.2| Os02g0769900 [Oryza sativa Japonica Group]
Length = 438
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 101/186 (54%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + +++ ++S + G V A + FD MP D V WTA+IDG ++ R EA+ F
Sbjct: 76 MPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAIDCF 135
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M + D T++++++A A + AL LG W+ + + ++ ++ N+LIDMY C
Sbjct: 136 RAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLIDMYARC 195
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VE A ++ SW +MIVG A +G A++ F M R KPD V + GVL
Sbjct: 196 GQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTFTGVL 255
Query: 173 SACTHN 178
+AC+H
Sbjct: 256 TACSHG 261
>gi|242061948|ref|XP_002452263.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
gi|241932094|gb|EES05239.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
Length = 603
Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats.
Identities = 64/186 (34%), Positives = 106/186 (56%), Gaps = 11/186 (5%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+D ++WT+++S Y ++D A Q FD MP++D V WTA+I G+ + AL LF+ M
Sbjct: 240 RDNVTWTSMISGYCQVKKLDEALQVFDMMPDKDRVAWTALISGHEQNGEEDTALELFERM 299
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKND---IFAGNALIDMYCIC 120
+ F +VS+L A A L + G+ + I + + +D IF NAL+DMY C
Sbjct: 300 LAEGVSPTTFALVSVLGACAKLGLVTRGKELHCSILRRSIGSDPFNIFIHNALVDMYSKC 359
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
D+ A ++D SW +M+ G + +G G ++L +F +ML A ++P V ++ VL
Sbjct: 360 GDMTAAMAVFHRMPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTFLAVL 419
Query: 173 SACTHN 178
+AC+H+
Sbjct: 420 TACSHS 425
Score = 58.9 bits (141), Expect = 8e-07, Method: Composition-based stats.
Identities = 48/197 (24%), Positives = 78/197 (39%), Gaps = 46/197 (23%)
Query: 25 ARQCFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG-----DEFTIVS 77
A FD MP R+ V + ++ + R EAL + + +G D FT+VS
Sbjct: 122 ALHLFDTMPADARNLVSYNTLMSSLVHHGRQAEALRVVARLARDRFLGPGLAMDRFTVVS 181
Query: 78 ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ---------- 127
+ TA A +RA + + + ++ + NA+++ Y VE+A+
Sbjct: 182 VATACAGIRAARPLREMHGAVVVSGMELTVIMANAMVNAYSKAWRVEEARHLFDQISIRD 241
Query: 128 -----------------------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158
KD+ +WT +I G +G D AL++F +ML
Sbjct: 242 NVTWTSMISGYCQVKKLDEALQVFDMMPDKDRVAWTALISGHEQNGEEDTALELFERMLA 301
Query: 159 ASIKPDEVAYVGVLSAC 175
+ P A V VL AC
Sbjct: 302 EGVSPTTFALVSVLGAC 318
>gi|226493697|ref|NP_001147320.1| selenium-binding protein-like [Zea mays]
gi|195609890|gb|ACG26775.1| selenium-binding protein-like [Zea mays]
Length = 605
Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats.
Identities = 67/183 (36%), Positives = 99/183 (54%), Gaps = 10/183 (5%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+SWT +V + G D AR FD MPER+ V W AM+ GY++ RF +AL +F EM+
Sbjct: 164 DVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEMR 223
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ G+ F + + A AL G + +++++ ++ D A++DMYC C VE
Sbjct: 224 ARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDMYCKCGCVE 283
Query: 125 K----------AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+ A K +W MI G A+ G G AL +F +M R + PD+V V VL+A
Sbjct: 284 EAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGQDALKLFGRMEREGVAPDDVTLVNVLTA 343
Query: 175 CTH 177
C H
Sbjct: 344 CAH 346
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMP--ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN 67
TA+V Y G V+ A + F+ +P + W MI G+ R ++AL LF M+
Sbjct: 270 TAVVDMYCKCGCVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGQDALKLFGRMEREG 329
Query: 68 IMGDEFTIVSILTARANLRALDLGEWIKTYI-DKNKVKNDIFAGNALIDMYCICADVEKA 126
+ D+ T+V++LTA A+ L G Y+ + ++ + ++D+Y +E+A
Sbjct: 330 VAPDDVTLVNVLTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEA 389
Query: 127 QK 128
+K
Sbjct: 390 KK 391
>gi|326520249|dbj|BAK07383.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 637
Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats.
Identities = 66/188 (35%), Positives = 105/188 (55%), Gaps = 11/188 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D +SWT++++ Y ++D A + F MPE+D + WTA+I G+ + AL LF
Sbjct: 233 MSIQDTVSWTSMIAGYCRAKRLDEAIRVFHMMPEQDTIAWTALISGHEQNGEEDAALDLF 292
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKND---IFAGNALIDMY 117
Q+M + F +VS L A A L + G + +I + ++ D IF NALIDMY
Sbjct: 293 QQMLVEGMAPTPFALVSSLGACAKLGLVTRGREVHGFILRRRIGLDPFNIFIHNALIDMY 352
Query: 118 CICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
C D+ A ++D SW +M+ G + +G G ++L MF +ML A ++P V ++
Sbjct: 353 SKCGDMATAMLVFARMSERDFISWNSMVTGFSHNGQGKQSLAMFKRMLDAEVQPTYVTFL 412
Query: 170 GVLSACTH 177
VL+AC+H
Sbjct: 413 AVLTACSH 420
>gi|341606399|gb|AEK83302.1| At3g62890-like protein [Capsella grandiflora]
gi|341606401|gb|AEK83303.1| At3g62890-like protein [Capsella grandiflora]
Length = 183
Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 101/165 (61%), Gaps = 14/165 (8%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+KD+ +W ++V+ Y G +D AR FD+MPER+ + W+ +I+GY +++EAL LF+E
Sbjct: 19 SKDLPAWNSVVNSYAKAGFLDDARTLFDEMPERNVISWSCLINGYFMRGKYKEALDLFRE 78
Query: 63 MQTSN-----IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
MQ + ++FT+ ++L+A L AL+ G+W+ YIDK++V+ DI G ALIDMY
Sbjct: 79 MQLPKPNEAFVXPNKFTLSTVLSACGRLGALEQGKWVHAYIDKHQVEIDIVLGTALIDMY 138
Query: 118 CICADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMF 153
C +E+A +KD +++ MI LA+ G D+ +F
Sbjct: 139 AKCGSLERAKRVFTALGSKKDVQAYSAMICCLAMYGLTDECFQLF 183
>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 708
Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 102/176 (57%), Gaps = 8/176 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G + AR+ F+ + + D VLWT+MI GY++ +AL+L+ MQ I+
Sbjct: 352 TALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGIL 411
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
+E T+ S+L A +NL A D G I K + ++ G+AL MY C ++E+
Sbjct: 412 PNELTMASVLKACSNLAAFDQGRQIHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIV 471
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
++D SW MI GL+ +G G +AL++F +M + KPD+V +V VLSAC+H
Sbjct: 472 FRRMPERDIISWNAMISGLSQNGYGKEALELFEEMRQQDTKPDDVTFVNVLSACSH 527
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 93/180 (51%), Gaps = 8/180 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV +++++ Y G + AR+ FD+MPER+ V W MI GY EA +F+ M+
Sbjct: 145 DVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMR 204
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+EF S+L+A A +D G+ I K + + NAL+ MY C ++
Sbjct: 205 REEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLD 264
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+ K+ +W+ MI G A SG+ KAL +FS+M A I P E VGVL+AC+
Sbjct: 265 DSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACS 324
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 8/175 (4%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+V+ Y G +D + Q F+ +++ + W+AMI GY + +AL LF M + I
Sbjct: 252 ALVTMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINP 311
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK-- 128
EFT+V +L A ++ A++ G+ + Y+ K ++ ++ AL+DMY E A+K
Sbjct: 312 SEFTLVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGF 371
Query: 129 ------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
D WT+MI G +G + AL ++ +M I P+E+ VL AC++
Sbjct: 372 NYLQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSN 426
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 87/174 (50%), Gaps = 10/174 (5%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREA--LTLFQEMQTSNI 68
++++ Y + A+ FD++ +D + W +I+GY + + + LFQ M+ NI
Sbjct: 48 SLINFYAKCCHLPKAKLVFDRIHNKDVISWNCLINGYSQQGPTGSSFVMELFQRMRADNI 107
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA-- 126
+ + T I TA +NL ++ G+ K D+F G++L++MYC + +A
Sbjct: 108 LPNAHTFSGIFTAASNLSSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFEARE 167
Query: 127 ------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
++++ +W TMI G AI +A ++F M R +E A+ VLSA
Sbjct: 168 VFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVLSA 221
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+V +A+ + Y G ++ F +MPERD + W AMI G + +EAL LF+EM+
Sbjct: 448 EVTIGSALSTMYAKCGNLEEGNIVFRRMPERDIISWNAMISGLSQNGYGKEALELFEEMR 507
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWI 94
+ D+ T V++L+A +++ +D G W+
Sbjct: 508 QQDTKPDDVTFVNVLSACSHMGLVDSG-WL 536
>gi|242063508|ref|XP_002453043.1| hypothetical protein SORBIDRAFT_04g037320 [Sorghum bicolor]
gi|241932874|gb|EES06019.1| hypothetical protein SORBIDRAFT_04g037320 [Sorghum bicolor]
Length = 578
Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats.
Identities = 64/188 (34%), Positives = 109/188 (57%), Gaps = 11/188 (5%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
K KD W+ ++S Y G++ +AR FD+MP +D V WT ++ GY++ R +EAL LF+
Sbjct: 266 KTKDARIWSVMMSGYARAGEIYMARNLFDEMPNKDLVAWTVLVGGYVQAGRCKEALQLFE 325
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK-VKNDIFAGNALIDMY--- 117
EM+ + + DE T+V++L+A A+ L + + +++N V + + + +Y
Sbjct: 326 EMEATGLEADEVTVVTVLSACVQHGAIGLAKRLHRRVNQNGLVSRNARVATSFVHIYAKH 385
Query: 118 -CI--CADVEKAQKDKFS----WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
CI DV + D+F + MI GLA G G+KA+ +F +M ++PD++ +VG
Sbjct: 386 GCIQTAMDVFRGVTDEFKTVELFNAMIHGLAHHGYGEKAISLFDEMETLELQPDDITFVG 445
Query: 171 VLSACTHN 178
VL AC+H+
Sbjct: 446 VLCACSHS 453
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 52/219 (23%), Positives = 89/219 (40%), Gaps = 46/219 (21%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ +++ Y + G +A + FD+MP D V + +I Y++ AL +F++M
Sbjct: 132 DLFVANSLLHFYASFGLHALACKLFDEMPASDTVSFNTLISSYVQSGCVERALGVFRDMV 191
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGN----ALIDMYCIC 120
DE+TI ++L A A L L + + + + +++ +F L+DMY C
Sbjct: 192 EGGFRLDEWTITALLGACAGLGDLMVAKAAHGFASR-ALRHTLFDSAEVVIGLVDMYVKC 250
Query: 121 ADV-----------------------------------------EKAQKDKFSWTTMIVG 139
V E KD +WT ++ G
Sbjct: 251 GAVQLSRRAFNLFGDKTKDARIWSVMMSGYARAGEIYMARNLFDEMPNKDLVAWTVLVGG 310
Query: 140 LAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+G +AL +F +M ++ DEV V VLSAC +
Sbjct: 311 YVQAGRCKEALQLFEEMEATGLEADEVTVVTVLSACVQH 349
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 14/178 (7%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN 67
T+ V Y G + A F + + + L+ AMI G +A++LF EM+T
Sbjct: 376 TSFVHIYAKHGCIQTAMDVFRGVTDEFKTVELFNAMIHGLAHHGYGEKAISLFDEMETLE 435
Query: 68 IMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126
+ D+ T V +L A ++ ++ G + + DK VK DI + D+ +++A
Sbjct: 436 LQPDDITFVGVLCACSHSNLVEQGRKMFLSMSDKYGVKPDIKHHACMADLLGRAGRIDEA 495
Query: 127 ---------QKDKFSWTTMIVGLAISGNGD--KALDMFSQMLRASIKPDEVAYVGVLS 173
+ + W++++ I GN K ++ L A+ KP+++ G+ S
Sbjct: 496 YNFIQNMPFKANHVVWSSLLTACKIHGNNKIRKLVERQILGLDATYKPEKLTLSGLFS 553
Score = 40.4 bits (93), Expect = 0.28, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY---------CICA 121
D ++ + L A + L + G ++ K+ +D+F N+L+ Y C
Sbjct: 97 DSRSLSAALAACSRLESPSAGFCTHAFVLKSGFASDLFVANSLLHFYASFGLHALACKLF 156
Query: 122 DVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
D E D S+ T+I SG ++AL +F M+ + DE +L AC
Sbjct: 157 D-EMPASDTVSFNTLISSYVQSGCVERALGVFRDMVEGGFRLDEWTITALLGAC 209
>gi|242078691|ref|XP_002444114.1| hypothetical protein SORBIDRAFT_07g008510 [Sorghum bicolor]
gi|241940464|gb|EES13609.1| hypothetical protein SORBIDRAFT_07g008510 [Sorghum bicolor]
Length = 718
Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats.
Identities = 59/165 (35%), Positives = 99/165 (60%), Gaps = 8/165 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D ++ +++ Y G+V AR FD+MP R+ V W+AM++GY++ REAL +F +MQ
Sbjct: 142 DASTFNTLITAYARAGRVADARALFDEMPVRNAVSWSAMVNGYVQAGDAREALQIFAQMQ 201
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
++ D+ +V +L A A AL+ G+W+ Y+ + ++ +F G AL+DMY C +V+
Sbjct: 202 AEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIRITVFFGTALVDMYSKCGEVQ 261
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI 161
A K+ +WTTMI LA+ G G +AL +F+QM+ + +
Sbjct: 262 LAMEVFERMEDKNVLAWTTMIKSLAMHGRGSEALMLFTQMVSSGL 306
Score = 48.9 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 111 NALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIK 162
N LI Y V A+ ++ SW+ M+ G +G+ +AL +F+QM ++
Sbjct: 147 NTLITAYARAGRVADARALFDEMPVRNAVSWSAMVNGYVQAGDAREALQIFAQMQAEDVR 206
Query: 163 PDEVAYVGVLSACTHN 178
PD+ VGVL+AC +
Sbjct: 207 PDDTVLVGVLAACAQH 222
Score = 45.4 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 44/166 (26%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G+V +A + F++M +++ + WT MI R EAL LF +M +S +
Sbjct: 248 TALVDMYSKCGEVQLAMEVFERMEDKNVLAWTTMIKSLAMHGRGSEALMLFTQMVSSGL- 306
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
+DK + ++F ++++ Y I +E
Sbjct: 307 ----------------------------VDKGR---ELF--DSMVRKYGIKPKIEH---- 329
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ LA +G D+A +M +M +KPD + + +++ C
Sbjct: 330 ---YGCMVDLLARNGFLDEAKEMIQKM---PMKPDALIWGALMAGC 369
>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 112/187 (59%), Gaps = 13/187 (6%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+S+T ++ Y G + AR FD+ PE+D V W+A+I GY R + EA+ +F
Sbjct: 228 MVERNVVSFTVMIDGYAKVGDMASARALFDEAPEKDVVAWSALISGYSRNEQPNEAVKIF 287
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV---KNDIFAGNALIDMY 117
EM + N+ DEF +VS+++A + L DL +W+ +Y+ + + + + A ALIDM+
Sbjct: 288 FEMVSMNVKPDEFIMVSLMSACSQLGNSDLAKWVDSYLSQTSIDTRQAHVLA--ALIDMH 345
Query: 118 CICADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
C ++EKA K D ++I GL+I G G +A+++F++ML + PD VA+
Sbjct: 346 AKCGNMEKAVKLFQDMPSRDLIPCCSLIQGLSIHGRGVEAVELFNRMLDEGLIPDTVAFT 405
Query: 170 GVLSACT 176
+L+AC+
Sbjct: 406 VILTACS 412
>gi|341606393|gb|AEK83299.1| At3g62890-like protein [Capsella grandiflora]
Length = 183
Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 101/165 (61%), Gaps = 14/165 (8%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+KD+ +W ++V+ Y G +D AR FD+MPER+ + W+ +I+GY +++EAL LF+E
Sbjct: 19 SKDLPAWNSVVNSYAKAGFLDDARXLFDEMPERNVISWSCLINGYFMRGKYKEALDLFRE 78
Query: 63 MQTSN-----IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
MQ + ++FT+ ++L+A L AL+ G+W+ YIDK++V+ DI G ALIDMY
Sbjct: 79 MQLPKPXEAFVKPNKFTLSTVLSACGRLGALEQGKWVHAYIDKHQVEIDIVLGTALIDMY 138
Query: 118 CICADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMF 153
C +E+A +KD +++ MI LA+ G D+ +F
Sbjct: 139 AKCGSLERAKRVFTALGSKKDVQAYSAMICCLAMYGLTDECFQLF 183
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 13/86 (15%)
Query: 103 VKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFS 154
V D+ A N++++ Y ++ A +++ SW+ +I G + G +ALD+F
Sbjct: 18 VSKDLPAWNSVVNSYAKAGFLDDARXLFDEMPERNVISWSCLINGYFMRGKYKEALDLFR 77
Query: 155 QM-----LRASIKPDEVAYVGVLSAC 175
+M A +KP++ VLSAC
Sbjct: 78 EMQLPKPXEAFVKPNKFTLSTVLSAC 103
>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
Length = 638
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 101/186 (54%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DVISW+ ++ Y G + +AR FD+MP++D V + ++ GY + + EAL +F
Sbjct: 282 MPKRDVISWSNMIDGYAKLGDIKVARTLFDEMPDKDVVAFNTIMAGYAQNGYYTEALEIF 341
Query: 61 QEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
EMQ SN+ DE T+V L+A + L ++ + Y +N + ALIDMY
Sbjct: 342 HEMQRQSNLSPDETTLVVALSAISQLGHVEKAASMHNYFLENGISVTGKVAVALIDMYSK 401
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C +E A QK W MI G+A +G G A M +M R S+KPD + ++GV
Sbjct: 402 CGSIENAILIFDGVDQKGIDHWNAMISGMARNGLGKLAFGMLLEMHRLSVKPDGITFIGV 461
Query: 172 LSACTH 177
L+AC H
Sbjct: 462 LNACAH 467
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 94/186 (50%), Gaps = 20/186 (10%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMP--ERDYVLWTAMIDGYLRV-NRFREAL 57
M +D +S+ +++ Y+ G +D+AR+ FD MP +++ + W +M+ G+ + + AL
Sbjct: 186 MPIQDSVSYNSMIDGYVKSGTIDLARELFDSMPLEDKNLISWNSMLGGFAQTKDGIGLAL 245
Query: 58 TLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
LF++M E +VS T E+ + ++ K D+ + + +ID Y
Sbjct: 246 ELFEKMP-------ERDLVSWNTIIGGFAKCGRIEFAHSLFNRMP-KRDVISWSNMIDGY 297
Query: 118 CICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAY 168
D++ A+ KD ++ T++ G A +G +AL++F +M R S + PDE
Sbjct: 298 AKLGDIKVARTLFDEMPDKDVVAFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPDETTL 357
Query: 169 VGVLSA 174
V LSA
Sbjct: 358 VVALSA 363
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 8/129 (6%)
Query: 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIK 95
D LW A+I Y N AL LF M + D+F+ IL A A + ++ G+ I
Sbjct: 89 DPFLWNAVIKSYSHGNEPVRALVLFCMMLENGFCVDKFSFSLILKACARVCLVEEGKQIH 148
Query: 96 TYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGD 147
+ K ++ +++F N LI MY C D+E A+ +D S+ +MI G SG D
Sbjct: 149 GLLMKLEIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMPIQDSVSYNSMIDGYVKSGTID 208
Query: 148 KALDMFSQM 156
A ++F M
Sbjct: 209 LARELFDSM 217
>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Brachypodium distachyon]
Length = 796
Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats.
Identities = 64/176 (36%), Positives = 95/176 (53%), Gaps = 8/176 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+ + Y +D AR+ FD MPE+ W AMI GY + A+ LFQ+MQ N+
Sbjct: 361 TALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVR 420
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-- 127
+ TI S L+A A L AL LG+W+ I K++ +++ ALIDMY C + +A+
Sbjct: 421 PNPLTISSALSACAQLGALSLGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCI 480
Query: 128 ------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
K+ SW MI G + G G +AL ++ M+ A + P ++ VL AC+H
Sbjct: 481 FDSMDNKNVVSWNVMISGYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSH 536
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 8/176 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T ++S Y G ++ AR FD+M D V + A+I GY ++ LF+E+ +
Sbjct: 260 TGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLR 319
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
T+V+++ + L + ++ K + + AL +YC D++ A
Sbjct: 320 PSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRA 379
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+K SW MI G A +G + A+ +F QM +++P+ + LSAC
Sbjct: 380 FDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQ 435
Score = 59.3 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 40/172 (23%), Positives = 77/172 (44%), Gaps = 13/172 (7%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ-TSNI 68
+A+ Y + + AR+ FD +P D VLW ++ G EAL F M ++
Sbjct: 162 SALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGL----SGSEALEAFVRMAGAGSV 217
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
D T+ S+L A A + +G + + +K + LI +Y C D+E A+
Sbjct: 218 RPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARH 277
Query: 129 --------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
D ++ +I G +I+G ++++F +++ ++P V ++
Sbjct: 278 LFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALI 329
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 41/77 (53%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+V TA++ Y+ G + AR FD M ++ V W MI GY + EAL L+++M
Sbjct: 457 NVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGAEALKLYKDMM 516
Query: 65 TSNIMGDEFTIVSILTA 81
+++ T +S+L A
Sbjct: 517 DAHLHPTSSTFLSVLYA 533
>gi|341606381|gb|AEK83293.1| At3g62890-like protein [Capsella grandiflora]
gi|341606415|gb|AEK83310.1| At3g62890-like protein [Capsella grandiflora]
gi|341606445|gb|AEK83325.1| At3g62890-like protein [Capsella grandiflora]
gi|341606447|gb|AEK83326.1| At3g62890-like protein [Capsella grandiflora]
gi|341606453|gb|AEK83329.1| At3g62890-like protein [Capsella grandiflora]
gi|341606461|gb|AEK83333.1| At3g62890-like protein [Capsella grandiflora]
gi|341606475|gb|AEK83340.1| At3g62890-like protein [Capsella grandiflora]
gi|341606499|gb|AEK83352.1| At3g62890-like protein [Capsella grandiflora]
gi|341606517|gb|AEK83361.1| At3g62890-like protein [Capsella grandiflora]
Length = 183
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 101/165 (61%), Gaps = 14/165 (8%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+KD+ +W ++V+ Y G +D AR FD+MPER+ + W+ +I+GY +++EAL LF+E
Sbjct: 19 SKDLPAWNSVVNSYAKAGFLDDARXLFDEMPERNVISWSCLINGYFMRGKYKEALDLFRE 78
Query: 63 MQTSN-----IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
MQ + ++FT+ ++L+A L AL+ G+W+ YIDK++V+ DI G ALIDMY
Sbjct: 79 MQLPKPNEAFVKPNKFTLSTVLSACGRLGALEQGKWVHAYIDKHQVEIDIVLGTALIDMY 138
Query: 118 CICADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMF 153
C +E+A +KD +++ MI LA+ G D+ +F
Sbjct: 139 AKCGSLERAKRVFTALGSKKDVQAYSAMICCLAMYGLTDECFQLF 183
Score = 36.2 bits (82), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 13/86 (15%)
Query: 103 VKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFS 154
V D+ A N++++ Y ++ A +++ SW+ +I G + G +ALD+F
Sbjct: 18 VSKDLPAWNSVVNSYAKAGFLDDARXLFDEMPERNVISWSCLINGYFMRGKYKEALDLFR 77
Query: 155 QML-----RASIKPDEVAYVGVLSAC 175
+M A +KP++ VLSAC
Sbjct: 78 EMQLPKPNEAFVKPNKFTLSTVLSAC 103
>gi|296083914|emb|CBI24302.3| unnamed protein product [Vitis vinifera]
Length = 541
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 110/187 (58%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++I A++ Y+ G + A+ F +M RD + WT M+ G + EA+ +F
Sbjct: 204 MDGDNIILDNALLDFYVKCGYLVSAKYLFMKMFRRDVISWTTMVGGLAQGGLCEEAVEVF 263
Query: 61 QEM-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYID-KNKVKNDIFAGNALIDMYC 118
Q M + + +E T+V++LTA ++L AL+LG W+ +YI + + D GNALI+MY
Sbjct: 264 QAMVKGGEAVPNEVTLVNVLTACSSLSALNLGRWVHSYISTRYDLVVDGNVGNALINMYA 323
Query: 119 ICADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C+D+ E KD SW+T+I G+A++G+G AL FS ML + PD+V ++G
Sbjct: 324 KCSDMYMAVRVFNELTHKDMISWSTIIGGMAMNGHGMHALQFFSLMLVHGVSPDDVTFIG 383
Query: 171 VLSACTH 177
+LSAC+H
Sbjct: 384 LLSACSH 390
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 91/182 (50%), Gaps = 12/182 (6%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
D+ ++ Y+ A+ F + D V WT++I G + EA+ F M
Sbjct: 109 SDIFIQNTLLHSYVVENNFVFAKSVFKSISSPDVVSWTSIISGLSKCGFDEEAIGEFLSM 168
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
++ + T+VS+++A LRA+ G+ I Y ++ ++I NAL+D Y C +
Sbjct: 169 ---DVKPNTSTLVSVVSACCGLRAVRFGKAIHGYSLRSMDGDNIILDNALLDFYVKCGYL 225
Query: 124 EKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSA 174
A+ +D SWTTM+ GLA G ++A+++F M++ P+EV V VL+A
Sbjct: 226 VSAKYLFMKMFRRDVISWTTMVGGLAQGGLCEEAVEVFQAMVKGGEAVPNEVTLVNVLTA 285
Query: 175 CT 176
C+
Sbjct: 286 CS 287
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 11/130 (8%)
Query: 54 REALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNAL 113
++AL L+ +M + FT L A ++L AL I K+ +DIF N L
Sbjct: 58 QDALLLYNQMVLHRTSHNHFTFTHALIASSSLHALHKTLEIHARAIKSGHYSDIFIQNTL 117
Query: 114 IDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165
+ Y + + A+ D SWT++I GL+ G ++A+ F M +KP+
Sbjct: 118 LHSYVVENNFVFAKSVFKSISSPDVVSWTSIISGLSKCGFDEEAIGEFLSM---DVKPNT 174
Query: 166 VAYVGVLSAC 175
V V+SAC
Sbjct: 175 STLVSVVSAC 184
>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
Length = 608
Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats.
Identities = 61/183 (33%), Positives = 105/183 (57%), Gaps = 9/183 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
K+ + WTA++S Y + G A F MP WTA+I G+++ + A+ LF EM
Sbjct: 167 KNSVVWTALISGYASNGCTGEALDLFQSMPAHGLFTWTALISGFVKAGNYTGAMGLFVEM 226
Query: 64 QTSNI-MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ +I + D F + +++ A+L AL LG + ++ + + + GNAL+DMY C+D
Sbjct: 227 RRDDIRIHDAFVLATVIGGAADLAALVLGRQLHGFVMRLGFLSSMIVGNALVDMYSKCSD 286
Query: 123 VEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+ A+ +D SWTT++VG A G ++ ++++ML A +KP+EV +VG++ A
Sbjct: 287 IHSAREVFEGITVRDVISWTTILVGEAQHGRAEEVFALYNRMLLAGMKPNEVTFVGLIYA 346
Query: 175 CTH 177
C+H
Sbjct: 347 CSH 349
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 9/154 (5%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM-G 70
+VS Y + AR+ FD P RD L++A++ + L L + M + + +
Sbjct: 42 LVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAVSHSSDPELVLPLLRRMLSDDALRP 101
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--- 127
D F + S+ +A LR+L LG + + + D ++LIDMYC C + A+
Sbjct: 102 DHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSADNVVKSSLIDMYCKCGVPQDARKVF 161
Query: 128 -----KDKFSWTTMIVGLAISGNGDKALDMFSQM 156
K+ WT +I G A +G +ALD+F M
Sbjct: 162 DSIGVKNSVVWTALISGYASNGCTGEALDLFQSM 195
>gi|326492712|dbj|BAJ90212.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326506700|dbj|BAJ91391.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 520
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 97/185 (52%), Gaps = 11/185 (5%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV++ + + G+VD AR FD MP R W+AM+ Y R RF +A+ LF MQ
Sbjct: 196 DVVACNSAIVALSRAGRVDEARAVFDGMPSRTVATWSAMVSAYSRAARFHDAVDLFSAMQ 255
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ + +VS+L A+L AL+ G W+ YIDK V + AL+DMYC C +
Sbjct: 256 VDGVEPNANVLVSVLGCCASLGALEQGAWVHAYIDKQDVGMNALVVIALVDMYCKCGSIH 315
Query: 125 KAQK-----------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
KA++ SW M++GLA G +AL +FS++ ++PD V ++ +L
Sbjct: 316 KARQVFDTSRSQGLAKLSSWNAMMLGLAAHGQCQEALALFSELESYGLRPDNVTFIAMLM 375
Query: 174 ACTHN 178
A H+
Sbjct: 376 AYGHS 380
>gi|297833170|ref|XP_002884467.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330307|gb|EFH60726.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 657
Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats.
Identities = 65/188 (34%), Positives = 106/188 (56%), Gaps = 10/188 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREAL-TL 59
+K KD+ SW +V ++ G ++ A+ FDQMP+RD V W +++ Y + + A+ L
Sbjct: 294 LKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPQRDLVSWNSLLFCYSKKGCDQRAVREL 353
Query: 60 FQEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC 118
F EM + D T+VS+++ AN L G W+ + + +++ D F +ALIDMYC
Sbjct: 354 FYEMLIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLMIRLQLEGDAFLSSALIDMYC 413
Query: 119 ICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C +E+A +KD WT+MI G A G G +AL +F +M + P++V +
Sbjct: 414 KCGLIERAFMVFKTATEKDVPLWTSMITGFAFHGYGQQALQLFKRMQEEDVTPNKVTLLA 473
Query: 171 VLSACTHN 178
VL+AC+H+
Sbjct: 474 VLTACSHS 481
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 80/158 (50%), Gaps = 10/158 (6%)
Query: 9 WTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI 68
W ++V Y+ G + A + F MP+ D + MI GY + EAL L+ +M + I
Sbjct: 168 WNSLVKFYMELGSLGFAEKVFAIMPQPDVSSFNVMIVGYAKQGFGLEALELYYKMVSDGI 227
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNK--VKNDIFAGNALIDMYCICADVEKA 126
DE+T++ +L +L + LG+ + +I++ +++ NAL+DMY C + A
Sbjct: 228 EPDEYTLLGLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILRNALLDMYFKCKESGLA 287
Query: 127 --------QKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
+KD SW TM+VG G+ + A +F QM
Sbjct: 288 KRAFDALKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQM 325
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 127 QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
Q D S+ MIVG A G G +AL+++ +M+ I+PDE +G+L C H
Sbjct: 193 QPDVSSFNVMIVGYAKQGFGLEALELYYKMVSDGIEPDEYTLLGLLVCCGH 243
>gi|357464703|ref|XP_003602633.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491681|gb|AES72884.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 647
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 109/189 (57%), Gaps = 12/189 (6%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD +SWT++V Y ++D A + F++MP + V W A+I G+++ R EAL +F
Sbjct: 273 MVEKDAVSWTSMVVTYTRASRIDDACKVFNEMPVKYTVSWAALISGFVKNGRCYEALEVF 332
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIF---AGNALIDMY 117
+M ++ T VS+L A A+ + G+ + I + + +++F NAL+DMY
Sbjct: 333 HQMIKEGVLPRAQTFVSVLDACASEALIGRGKQVHCQIIRGRSSDNLFNVYVFNALMDMY 392
Query: 118 CICADVEKAQ---------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
C D++ A+ KD SW T+I G A +G G+ +L +F +M+ ++I+P+ V +
Sbjct: 393 AKCGDMKSAENLFEMMIHVKDVVSWNTLITGFAQNGRGEDSLAVFDRMIESNIEPNHVTF 452
Query: 169 VGVLSACTH 177
+GVLSAC H
Sbjct: 453 LGVLSACNH 461
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 101/219 (46%), Gaps = 47/219 (21%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ NK +W ++S Y +G + A + FD+MP+R+ V + ++I G R +EA+ F
Sbjct: 139 LPNKTTRTWNTLLSFYSKKGVFNQAYKLFDEMPQRNLVSYNSLISGLTRHEFHKEAVKFF 198
Query: 61 QEMQT--SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV---KNDIFAGNALID 115
+EMQ +M DEFT+VS+++ N LD +W++ + + ++ NALID
Sbjct: 199 REMQNGVGGLMLDEFTLVSLVS---NCSCLDTVKWLRQVHGVATIVGFRTNLILNNALID 255
Query: 116 MYCICADVEKA--------QKDKFSWTTMIV----------------------------- 138
Y C + + +KD SWT+M+V
Sbjct: 256 AYGKCGEPNSSFCLFRSMVEKDAVSWTSMVVTYTRASRIDDACKVFNEMPVKYTVSWAAL 315
Query: 139 --GLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
G +G +AL++F QM++ + P +V VL AC
Sbjct: 316 ISGFVKNGRCYEALEVFHQMIKEGVLPRAQTFVSVLDAC 354
>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Glycine max]
Length = 705
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 102/181 (56%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV ++++ Y G+V++A F +P+ V W MI GY+ + EAL LF EM+
Sbjct: 342 DVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMR 401
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
S + D T S+LTA + L AL+ GE I I + K+ N+ AL+DMY C V+
Sbjct: 402 KSYVEPDAITFTSVLTACSQLAALEKGEEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVD 461
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+A ++D SWT+MI G AL++F++ML++++KPD V ++ +LSAC
Sbjct: 462 EAFSVFKCLPKRDLVSWTSMITAYGSHGQAYVALELFAEMLQSNMKPDRVTFLAILSACG 521
Query: 177 H 177
H
Sbjct: 522 H 522
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 94/175 (53%), Gaps = 8/175 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+A+V Y G +++A + F+QMP++ V W +MI GY + LF+ M +
Sbjct: 246 SALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVK 305
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-- 127
T+ S++ + L G+++ Y +N++++D+F ++L+D+Y C VE A+
Sbjct: 306 PTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENI 365
Query: 128 -----KDK-FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
K K SW MI G G +AL +FS+M ++ ++PD + + VL+AC+
Sbjct: 366 FKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACS 420
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 86/181 (47%), Gaps = 10/181 (5%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPER-DYVLWTAMIDGYLRVNRFREALTLFQEM 63
D+ +++ Y++ D A+ FD M + LW ++ GY + + EAL LF+++
Sbjct: 37 DIFLCKNLINLYLSCHLYDHAKCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKL 96
Query: 64 -QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ D +T S+L A L LG+ I T + K + DI G++L+ MY C
Sbjct: 97 LHYPYLKPDSYTYPSVLKACGGLYKYVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNA 156
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
EKA +KD W T+I SGN +AL+ F M R +P+ V +S+
Sbjct: 157 FEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISS 216
Query: 175 C 175
C
Sbjct: 217 C 217
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 8/180 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D++ +++V Y + A F++MPE+D W +I Y + F+EAL F M+
Sbjct: 140 DIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKEALEYFGLMR 199
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ TI + +++ A L L+ G I + + D F +AL+DMY C +E
Sbjct: 200 RFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLE 259
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A +K +W +MI G + G+ + +F +M +KP ++ C+
Sbjct: 260 MAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCS 319
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 25/175 (14%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ N +V+ A++ Y G VD A F +P+RD V WT+MI Y + AL LF
Sbjct: 440 LDNNEVV-MGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGQAYVALELF 498
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM SN+ D T ++IL+A + +D G + N ++++Y I
Sbjct: 499 AEMLQSNMKPDRVTFLAILSACGHAGLVDEG---------------CYYFNQMVNVYGII 543
Query: 121 ADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
VE ++ +I L +G +A ++ Q I+ D + SAC
Sbjct: 544 PRVEH-------YSCLIDLLGRAGRLHEAYEILQQ--NPEIRDDVELLSTLFSAC 589
>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
Length = 778
Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 108/176 (61%), Gaps = 9/176 (5%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A + Y G++D+AR+ F + ++D V WT+MI+ Y++ + AL LF++M+ I+
Sbjct: 238 AAMGMYARCGRIDVARRFFYGILDKDLVAWTSMIEAYVQADLPINALELFKQMKLLGIVP 297
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK-- 128
D T++S++ A +NL + L ++ I ++ KN I A+ID+Y C ++E A+K
Sbjct: 298 DSVTLLSLIHAVSNLASFQLARFVHGVITRSFFKNHIALDTAVIDLYVKCGNLEYARKCF 357
Query: 129 ------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+ SW+TMI G + G+G +AL +F QM +ASIKPD +A+V VLSAC+H
Sbjct: 358 DRMSARNLISWSTMISGYGMHGHGREALCLFDQM-KASIKPDHIAFVMVLSACSHG 412
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 87/181 (48%), Gaps = 11/181 (6%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
DV ++++ Y G D +RQ F++MPER+ V W++M+ Y R+ E L LF M
Sbjct: 133 SDVFVANSLMAMYGRFGCFDFSRQVFERMPERNVVSWSSMVGAYAHNGRYEEGLLLFWRM 192
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
I + +IV+ + R + ++ + ID N + +D NA + MY C +
Sbjct: 193 LNEGIAPNRGSIVNAMACIH--REHEADDFCRVVID-NGLDSDQSVQNAAMGMYARCGRI 249
Query: 124 EKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ A+ KD +WT+MI + AL++F QM I PD V + ++ A
Sbjct: 250 DVARRFFYGILDKDLVAWTSMIEAYVQADLPINALELFKQMKLLGIVPDSVTLLSLIHAV 309
Query: 176 T 176
+
Sbjct: 310 S 310
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 9/176 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T+++++Y + G + A F + LW +I + R +L L+ M I
Sbjct: 38 TSLIAQYASLGSISHAYALFSTSHSSNVFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQ 97
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI--CADVEK-- 125
FT +L A L +LG ++ ++D+F N+L+ MY C D +
Sbjct: 98 ATNFTFPFLLKACGCLADFELGARAHAHVVVFGYESDVFVANSLMAMYGRFGCFDFSRQV 157
Query: 126 ----AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+++ SW++M+ A +G ++ L +F +ML I P+ + V + AC H
Sbjct: 158 FERMPERNVVSWSSMVGAYAHNGRYEEGLLLFWRMLNEGIAPNRGSIVNAM-ACIH 212
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ Y+ G ++ AR+CFD+M R+ + W+ MI GY REAL LF +M+ S I
Sbjct: 338 TAVIDLYVKCGNLEYARKCFDRMSARNLISWSTMISGYGMHGHGREALCLFDQMKAS-IK 396
Query: 70 GDEFTIVSILTA 81
D V +L+A
Sbjct: 397 PDHIAFVMVLSA 408
>gi|449451283|ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
gi|449519310|ref|XP_004166678.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
Length = 565
Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 108/185 (58%), Gaps = 9/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+S+T ++ Y G + AR F + PERD + W+A+I GY + + EA+ F
Sbjct: 250 MPEKNVVSFTTMIDGYAKAGDMLSARNLFQKAPERDIIAWSALISGYTQNGQPNEAVKTF 309
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVK-NDIFAGNALIDMYCI 119
EM + N+ D+F + S++ A + L LDL +W+ +Y + V ALIDM
Sbjct: 310 LEMSSRNVKPDKFVLTSLMLACSQLGNLDLAKWVDSYATRCSVDLRGAHVTAALIDMNAK 369
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C ++E+A ++D S+ +++ GL+I G+GD+A+ +F +ML + PD+VA+ +
Sbjct: 370 CGNMERAMYLFEKMPKRDLISYCSVMQGLSIHGHGDQAVSLFERMLGEDLTPDDVAFTVI 429
Query: 172 LSACT 176
L+AC+
Sbjct: 430 LTACS 434
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 16/183 (8%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++D+ T++V+ Y G +D AR+ FD M ER+ V WTAMI GY + EA LF
Sbjct: 159 DEDIYVTTSLVNLYGKGGLIDCARKVFDGMSERNVVSWTAMIVGYSSIGNLVEAKRLFDL 218
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M N+ I ++ D+ K + D+ KN + + +ID Y D
Sbjct: 219 MPERNVASWNAII------GGYMKMGDVKSAEKAF-DEMPEKN-VVSFTTMIDGYAKAGD 270
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+ A ++D +W+ +I G +G ++A+ F +M ++KPD+ ++ A
Sbjct: 271 MLSARNLFQKAPERDIIAWSALISGYTQNGQPNEAVKTFLEMSSRNVKPDKFVLTSLMLA 330
Query: 175 CTH 177
C+
Sbjct: 331 CSQ 333
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 71/155 (45%), Gaps = 8/155 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T +S + + + FD++ LW +++ GY +F + ++L+ M+ +
Sbjct: 65 TQFISASNSVAHISYSTSVFDRVLSPSTFLWNSLVSGYCAKLQFVDIISLYVRMKREDGA 124
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK- 128
D +T S+L A+ + G + I + V DI+ +L+++Y ++ A+K
Sbjct: 125 PDRYTFPSLLKVCASEGKMMEGMALHGSILRCGVDEDIYVTTSLVNLYGKGGLIDCARKV 184
Query: 129 -------DKFSWTTMIVGLAISGNGDKALDMFSQM 156
+ SWT MIVG + GN +A +F M
Sbjct: 185 FDGMSERNVVSWTAMIVGYSSIGNLVEAKRLFDLM 219
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G ++ A F++MP+RD + + +++ G +A++LF+ M ++ D+ IL
Sbjct: 371 GNMERAMYLFEKMPKRDLISYCSVMQGLSIHGHGDQAVSLFERMLGEDLTPDDVAFTVIL 430
Query: 80 TARANLRALDLG 91
TA + +D G
Sbjct: 431 TACSRAGLVDEG 442
>gi|297800868|ref|XP_002868318.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
lyrata]
gi|297314154|gb|EFH44577.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
lyrata]
Length = 1057
Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 109/186 (58%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
++ K+ ISWTA+VS Y G+ + A + F ++P ++ WTA+I G+++ + EA ++F
Sbjct: 103 IRVKNTISWTAMVSGYAKSGRKEEALELFRRLPVKNLYSWTALISGFVQSGKGLEAFSVF 162
Query: 61 QEMQTSNI-MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
EM+ + + D + SI+ A ANL A G + + + +F NALIDMY
Sbjct: 163 TEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAK 222
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C+DV A +D SWT++IVG+A G +KAL ++ +M+ +KP+EV +VG+
Sbjct: 223 CSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDEMVSHGVKPNEVTFVGL 282
Query: 172 LSACTH 177
+ AC+H
Sbjct: 283 IYACSH 288
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 70/134 (52%), Gaps = 9/134 (6%)
Query: 32 MPERDYVLWTAMIDGYLRVNRFREAL-TLFQEMQTSNIMGDEFTIVSILTARANLRALDL 90
MP RD++ W +++ + N + L +S + D+F +++ A ANL ++ L
Sbjct: 1 MPHRDHIAWASVLTALNQANLSGKTLWVFSSVGSSSGLRPDDFVFSALVKACANLGSIKL 60
Query: 91 GEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAI 142
G+ + + ++ ND ++L+DMY C ++ A+ K+ SWT M+ G A
Sbjct: 61 GKQVHCHFIVSEYSNDDVVKSSLVDMYAKCRLLDCAKAVFDSIRVKNTISWTAMVSGYAK 120
Query: 143 SGNGDKALDMFSQM 156
SG ++AL++F ++
Sbjct: 121 SGRKEEALELFRRL 134
>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
Length = 558
Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats.
Identities = 64/184 (34%), Positives = 106/184 (57%), Gaps = 9/184 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ DV ++ Y G +D A + F++MPERD V W++MI + + EAL LFQ
Sbjct: 116 DSDVYVQNGLIHFYGCCGFLDFALKAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQR 175
Query: 63 MQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
MQ + DE ++S+++A + L L+LG+WI+ +I +N ++ + G AL+DM+ C
Sbjct: 176 MQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCG 235
Query: 122 DVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+E++ +++ +WT +I GLA+ G +AL MF +M +PD V + GVL
Sbjct: 236 CIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLV 295
Query: 174 ACTH 177
AC+H
Sbjct: 296 ACSH 299
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 14/125 (11%)
Query: 62 EMQTSNIMGDEFTIVSILTARANLR-ALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M + + D FT +L A A L+ LDL + + K +D++ N LI Y C
Sbjct: 77 KMTMAGVSPDHFTFPFVLKACARLQTGLDL----HSLLFKLGFDSDVYVQNGLIHFYGCC 132
Query: 121 --------ADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGV 171
A E ++D SW++MI A +G G +AL +F +M L ++KPDEV + V
Sbjct: 133 GFLDFALKAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSV 192
Query: 172 LSACT 176
+SA +
Sbjct: 193 VSAIS 197
>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Glycine max]
Length = 676
Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats.
Identities = 67/180 (37%), Positives = 102/180 (56%), Gaps = 8/180 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV T +V Y G + AR+ FD++PE++ V WTA+I GY+ F EAL LF+ +
Sbjct: 136 DVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLL 195
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ D FT+V IL A + + L G WI Y+ ++ ++F +L+DMY C +E
Sbjct: 196 EMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSME 255
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+A +KD W+ +I G A +G +ALD+F +M R +++PD A VGV SAC+
Sbjct: 256 EARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACS 315
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 64/181 (35%), Positives = 101/181 (55%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+V T++V Y G ++ AR+ FD M E+D V W+A+I GY +EAL +F EMQ
Sbjct: 237 NVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQ 296
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
N+ D + +V + +A + L AL+LG W + +D ++ ++ G ALID Y C V
Sbjct: 297 RENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVA 356
Query: 125 KAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+A+ KD + +I GLA+ G+ A +F QM++ ++PD +VG+L CT
Sbjct: 357 QAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCT 416
Query: 177 H 177
H
Sbjct: 417 H 417
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 9/157 (5%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL-RA 87
F Q P + L+ +I G + + FR+A++++ M+ D FT +L A L
Sbjct: 58 FAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHY 117
Query: 88 LDLGEWIKTYIDKNKVKNDIFAGNALIDMYC---ICADVEKA-----QKDKFSWTTMIVG 139
+G + + + K D+F L+ +Y D K +K+ SWT +I G
Sbjct: 118 FHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICG 177
Query: 140 LAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
SG +AL +F +L ++PD V +L AC+
Sbjct: 178 YIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACS 214
>gi|341606439|gb|AEK83322.1| At3g62890-like protein [Capsella grandiflora]
gi|341606441|gb|AEK83323.1| At3g62890-like protein [Capsella grandiflora]
Length = 183
Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 101/165 (61%), Gaps = 14/165 (8%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+KD+ +W ++V+ Y G +D AR FD+MPER+ + W+ +I+GY +++EAL LF+E
Sbjct: 19 SKDLPAWNSVVNSYAKAGFLDDARTLFDEMPERNVISWSCLINGYFMRGKYKEALDLFRE 78
Query: 63 MQTSN-----IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
MQ + ++FT+ ++L+A L AL+ G+W+ YIDK++V+ DI G ALIDMY
Sbjct: 79 MQLPKPNEAFVKPNKFTLSTVLSACGRLGALEQGKWVHAYIDKHQVEIDIVLGTALIDMY 138
Query: 118 CICADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMF 153
C +E+A +KD +++ MI LA+ G D+ +F
Sbjct: 139 AKCGSLERAKRVFTALGSKKDVQAYSAMICCLAMYGLTDECFQLF 183
Score = 36.2 bits (82), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 13/86 (15%)
Query: 103 VKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFS 154
V D+ A N++++ Y ++ A +++ SW+ +I G + G +ALD+F
Sbjct: 18 VSKDLPAWNSVVNSYAKAGFLDDARTLFDEMPERNVISWSCLINGYFMRGKYKEALDLFR 77
Query: 155 QML-----RASIKPDEVAYVGVLSAC 175
+M A +KP++ VLSAC
Sbjct: 78 EMQLPKPNEAFVKPNKFTLSTVLSAC 103
>gi|226528958|ref|NP_001141436.1| uncharacterized protein LOC100273546 [Zea mays]
gi|194704572|gb|ACF86370.1| unknown [Zea mays]
gi|414877969|tpg|DAA55100.1| TPA: hypothetical protein ZEAMMB73_905907 [Zea mays]
Length = 700
Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 103/185 (55%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NKD++SW +++ Y GQ+ A F +M R+ V W ++I G+++ +RF +AL F
Sbjct: 385 MPNKDMVSWNTMIAGYAQDGQMHKAIGIFRRMNRRNTVSWNSVISGFVQNDRFVDALHHF 444
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M+ D T S L A ANL L +G + + ++ ND FAGNALI Y C
Sbjct: 445 MLMRRGTNRADWSTYASCLRACANLAVLHVGRQLHNLLVRSGHINDSFAGNALISTYAKC 504
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ +A+ KD SW +I G A +G G +A+ +F +M ++PDEV +VG+L
Sbjct: 505 GRILEAKQIFDEMVYKDIVSWNALIDGYASNGQGTEAIAVFREMEANGVRPDEVTFVGIL 564
Query: 173 SACTH 177
SAC+H
Sbjct: 565 SACSH 569
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 97/210 (46%), Gaps = 37/210 (17%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+++ +VISW +++ Y G++ AR FD+MPER+ V W M+DGY+ ++ EA LF
Sbjct: 230 IESPNVISWVTLLNGYCRAGRIADARDLFDRMPERNVVAWNVMLDGYVHLSPIEEACKLF 289
Query: 61 QEMQTSNIMGDEFTIVSILTARANLR-ALDL------------GEWIKTYIDKNKVKN-- 105
EM N + TI+S L L+ A DL + Y+ +N +
Sbjct: 290 DEMPIKNSI-SWTTIISGLARAGKLQEAKDLLDKMSFNCVAAKTALMHGYLQRNMADDAR 348
Query: 106 DIFAG---------NALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDK 148
IF G N +I Y C +E+A KD SW TMI G A G K
Sbjct: 349 RIFDGMEVHDTVCWNTMISGYVQCGILEEAMLLFQRMPNKDMVSWNTMIAGYAQDGQMHK 408
Query: 149 ALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
A+ +F +M R + V++ V+S N
Sbjct: 409 AIGIFRRMNRR----NTVSWNSVISGFVQN 434
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 52/87 (59%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + A++S Y G++ A+Q FD+M +D V W A+IDGY + EA+ +F+EM+
Sbjct: 490 DSFAGNALISTYAKCGRILEAKQIFDEMVYKDIVSWNALIDGYASNGQGTEAIAVFREME 549
Query: 65 TSNIMGDEFTIVSILTARANLRALDLG 91
+ + DE T V IL+A ++ +D G
Sbjct: 550 ANGVRPDEVTFVGILSACSHAGLIDEG 576
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 15/166 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ +++ A++S G++D AR FD MP R+ V W AMI R +A +LF
Sbjct: 44 MPLRNTVTYNAMLSALARHGRIDEARALFDGMPGRNTVSWNAMIAALSDHGRVADARSLF 103
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M DEF+ +++ A R DL E + +D+ NA+I Y
Sbjct: 104 DRMPVR----DEFSWTVMVSCYA--RGGDL-ELARDVLDRMPGDKCTACYNAMISGYAKN 156
Query: 121 ADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLR 158
+ A K D SW + + GL SG +A+ F +M++
Sbjct: 157 GRFDDAMKLLREMPAPDLVSWNSALAGLTQSGEMVRAVQFFDEMVK 202
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 21/175 (12%)
Query: 13 VSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDE 72
++R GQ+ AR+ FD MP R+ V + AM+ R R EA LF M N +
Sbjct: 25 LTRLARSGQLAAARRLFDAMPLRNTVTYNAMLSALARHGRIDEARALFDGMPGRNTVSWN 84
Query: 73 FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----- 127
I ++ + R D ++ D+ V+ D F+ ++ Y D+E A+
Sbjct: 85 AMIAAL---SDHGRVAD----ARSLFDRMPVR-DEFSWTVMVSCYARGGDLELARDVLDR 136
Query: 128 --KDKFS--WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
DK + + MI G A +G D A+ ++LR PD V++ L+ T +
Sbjct: 137 MPGDKCTACYNAMISGYAKNGRFDDAM----KLLREMPAPDLVSWNSALAGLTQS 187
>gi|224123726|ref|XP_002330193.1| predicted protein [Populus trichocarpa]
gi|222871649|gb|EEF08780.1| predicted protein [Populus trichocarpa]
Length = 485
Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 101/186 (54%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DVI W ++ + RG VD+ F QM +R V W MI + R EAL LF
Sbjct: 168 MYQRDVIVWNLMIHGFCKRGDVDMGLCLFRQMRKRSVVSWNIMISCLAQSRRDSEALGLF 227
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFA-GNALIDMYCI 119
+M DE T+V++L A L ++D+G+WI +Y + + D A GNAL+D Y
Sbjct: 228 HDMLDWGFKPDEATVVTVLPICARLGSVDVGKWIHSYAKSSGLYRDFVAVGNALVDFYNK 287
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
E A +K+ SW T+I GLA++GNG+ +++ +M+ ++P++ +VGV
Sbjct: 288 SGMFETARRVFDEMPRKNVISWNTLISGLALNGNGELGVELLEEMMNEGVRPNDATFVGV 347
Query: 172 LSACTH 177
LS C H
Sbjct: 348 LSCCAH 353
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 75/191 (39%), Gaps = 39/191 (20%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A + F Q +L+ AMI GY F E+ LF M+ I DE+T+ +L A ++
Sbjct: 60 ANRIFKQTQNPTIILFNAMIKGYSLNGPFEESFRLFSSMKNRGIWPDEYTLAPLLKACSS 119
Query: 85 LRALDLGEWIKTYI--------------------------DKNKV-----KNDIFAGNAL 113
L L LG+ + + D KV + D+ N +
Sbjct: 120 LGVLQLGKCMHKEVLVVGFEGFSAIRIGVIELYSSCGVMEDAEKVFDEMYQRDVIVWNLM 179
Query: 114 IDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165
I +C DV+ ++ SW MI LA S +AL +F ML KPDE
Sbjct: 180 IHGFCKRGDVDMGLCLFRQMRKRSVVSWNIMISCLAQSRRDSEALGLFHDMLDWGFKPDE 239
Query: 166 VAYVGVLSACT 176
V VL C
Sbjct: 240 ATVVTVLPICA 250
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
A+V Y G + AR+ FD+MP ++ + W +I G + L +EM +
Sbjct: 279 NALVDFYNKSGMFETARRVFDEMPRKNVISWNTLISGLALNGNGELGVELLEEMMNEGVR 338
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDM 116
++ T V +L+ A+ + G E + + ++ ++++ + ++D+
Sbjct: 339 PNDATFVGVLSCCAHAGLFERGRELLASMVEHHQIEPKLEHYGCMVDL 386
>gi|356532565|ref|XP_003534842.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g50990-like [Glycine max]
Length = 569
Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats.
Identities = 65/181 (35%), Positives = 102/181 (56%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ S ++ + GQ DIA++ F +M RD V W +MI GY+R RF +AL++F+ M
Sbjct: 133 DLFSMNLVIESLVKGGQCDIAKKVFGKMSVRDVVTWNSMIGGYVRNLRFFDALSIFRRML 192
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV- 123
++ + D FT S++TA A L AL +W+ + + +V+ + ALIDMY C +
Sbjct: 193 SAKVEPDGFTFASVVTACARLGALGNAKWVHGLMVEKRVELNYILSAALIDMYAKCGRID 252
Query: 124 ------EKAQKDKFS-WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
E+ +D S W MI GLAI G A +FS+M + PD + ++G+L+AC+
Sbjct: 253 VSRQVFEEVARDHVSVWNAMISGLAIHGLAMDATLVFSRMEMEHVLPDSITFIGILTACS 312
Query: 177 H 177
H
Sbjct: 313 H 313
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 27/166 (16%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYV-LWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
A++ Y G++D++RQ F+++ RD+V +W AMI G +A +F M+ +++
Sbjct: 240 ALIDMYAKCGRIDVSRQVFEEVA-RDHVSVWNAMISGLAIHGLAMDATLVFSRMEMEHVL 298
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
D T + ILTA ++ ++ G + Y + + + I +E
Sbjct: 299 PDSITFIGILTACSHCGLVEEG---RKYF------------GMMQNRFMIQPQLEH---- 339
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ TM+ L +G ++A + +M ++PD V + +LSAC
Sbjct: 340 ---YGTMVDLLGRAGLMEEAYAVIKEM---RMEPDIVIWRALLSAC 379
>gi|359491319|ref|XP_002281821.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74400-like [Vitis vinifera]
Length = 482
Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 107/192 (55%), Gaps = 24/192 (12%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T+++S Y G V A FD++P ++ + WT++I Y+ R +AL LF++MQ ++
Sbjct: 109 TSLISMYSATGNVADAHNMFDEIPSKNLISWTSVISAYVDNQRPNKALQLFRQMQMDDVQ 168
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
D T+ L+A A+L ALD+GEWI YI + D+ N+LI+MY C ++ A
Sbjct: 169 PDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLNNSLINMYSKCGEIGTARRL 228
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS----------------IKPDE 165
+KD +WT+MIVG A+ G ++AL +F++M + + P++
Sbjct: 229 FDGTQKKDVTTWTSMIVGHALHGQAEEALQLFTEMKETNKRARKNKRNGEHESSLVLPND 288
Query: 166 VAYVGVLSACTH 177
V ++GVL AC+H
Sbjct: 289 VTFMGVLMACSH 300
>gi|302816404|ref|XP_002989881.1| hypothetical protein SELMODRAFT_23653 [Selaginella moellendorffii]
gi|300142447|gb|EFJ09148.1| hypothetical protein SELMODRAFT_23653 [Selaginella moellendorffii]
Length = 353
Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 100/183 (54%), Gaps = 9/183 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
K+V+SWTAIV+ ++D AR F++MP R+ V W A+I GYL +R +A+ L+ M
Sbjct: 72 KNVVSWTAIVAALAQNKRLDQARDLFNRMPIRNVVSWNAIITGYLDDDRPPDAIDLYYRM 131
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ + D T V++L A A++ L LG I ++ + + DI G AL+ MY C
Sbjct: 132 RQEGVPADRVTFVAMLEAAASITNLVLGRVIHSHTQEEGIDGDILVGTALLSMYGRCGCT 191
Query: 124 EKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
E A + D W+ +I + GNG KAL++F ML I P+ V V VLSA
Sbjct: 192 EMAIRTFHGMPPRHDVVVWSALIASFSHCGNGGKALEVFHGMLLDGILPNGVTLVSVLSA 251
Query: 175 CTH 177
C+H
Sbjct: 252 CSH 254
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPER-DYVLWTAMIDGYLRVNRFREALTLFQ 61
+ D++ TA++S Y G ++A + F MP R D V+W+A+I + +AL +F
Sbjct: 172 DGDILVGTALLSMYGRCGCTEMAIRTFHGMPPRHDVVVWSALIASFSHCGNGGKALEVFH 231
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLG 91
M I+ + T+VS+L+A +++ A++ G
Sbjct: 232 GMLLDGILPNGVTLVSVLSACSHIGAVEKG 261
Score = 39.3 bits (90), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 11/97 (11%)
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNK--VKNDIFAGNALIDMYCICADVEKA-- 126
DE T+VS + A A+ L +G + + + + D GN+LI++Y C E+A
Sbjct: 4 DEVTVVSAIDACAHQGDLAMGIAVHSDLASSGGIEIEDAAVGNSLINLYGKCRMAEEALE 63
Query: 127 -------QKDKFSWTTMIVGLAISGNGDKALDMFSQM 156
+K+ SWT ++ LA + D+A D+F++M
Sbjct: 64 VFQSMRCRKNVVSWTAIVAALAQNKRLDQARDLFNRM 100
>gi|218186152|gb|EEC68579.1| hypothetical protein OsI_36919 [Oryza sativa Indica Group]
Length = 586
Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats.
Identities = 67/186 (36%), Positives = 105/186 (56%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+ + WTA+VS Y + G+ + A Q F MP R+ WTA+I G + A+ LF
Sbjct: 142 MSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELF 201
Query: 61 QEMQTSNI-MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
EM+ + + D F + ++ A A+L A LG + + +++ GNALIDMY
Sbjct: 202 VEMRRDGVRIDDAFVLSIVIGASADLAAFVLGRQLHGSAMRLGFLSNMIVGNALIDMYSK 261
Query: 120 CADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C+D+ A+ +D SWTTM+VG A G ++AL ++ +M+ A KP+EV +VG+
Sbjct: 262 CSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGL 321
Query: 172 LSACTH 177
+ AC+H
Sbjct: 322 IYACSH 327
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 9/155 (5%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+VS Y + A FD+ P RD ++++++ AL + + M +++ +
Sbjct: 19 ALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAISHSASPELALPILRCMLSADALH 78
Query: 71 -DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK- 128
D F I S+ + A LR+ LG + + + D ++L+DMYC C + +K
Sbjct: 79 PDHFVISSVASVFARLRSRRLGRQLHAHFVASPYNGDDVVKSSLVDMYCKCGSPDDGRKV 138
Query: 129 -DKFS------WTTMIVGLAISGNGDKALDMFSQM 156
D S WT ++ G A +G ++AL +F M
Sbjct: 139 FDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSM 173
Score = 43.1 bits (100), Expect = 0.047, Method: Composition-based stats.
Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 25/172 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
++I A++ Y + AR+ F+ + RD + WT M+ G + R EAL L+ M
Sbjct: 248 NMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMV 307
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ +E T V ++ A ++ + G + +KN+ Y I ++
Sbjct: 308 LAGAKPNEVTFVGLIYACSHAGLVQKGRQLF-----ESMKNE----------YGITPRLQ 352
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+T + L+ SG+ +A ++ + M +PDE + +LSACT
Sbjct: 353 H-------YTCYLDLLSRSGHLLEAEELMTTM---PYEPDEATWGALLSACT 394
>gi|341606407|gb|AEK83306.1| At3g62890-like protein [Capsella grandiflora]
Length = 183
Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 100/165 (60%), Gaps = 14/165 (8%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+KD+ +W ++V Y G +D AR FD+MPER+ + W+ +I+GY +++EAL LF+E
Sbjct: 19 SKDLPAWNSVVXSYAKAGFLDDARXLFDEMPERNVISWSCLINGYFMRGKYKEALDLFRE 78
Query: 63 MQTSN-----IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
MQ + ++FT+ ++L+A L AL+ G+W+ YIDK++V+ DI G ALIDMY
Sbjct: 79 MQLPKPNEAFVKPNKFTLSTVLSACGRLGALEQGKWVHAYIDKHQVEIDIVLGTALIDMY 138
Query: 118 CICADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMF 153
C +E+A +KD +++ MI LA+ G D+ +F
Sbjct: 139 AKCGSLERAKRVFTALGSKKDVQAYSAMICCLAMYGLTDECFQLF 183
Score = 36.2 bits (82), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQML-----RASIKPDEVAYVGVLSAC 175
E +++ SW+ +I G + G +ALD+F +M A +KP++ VLSAC
Sbjct: 47 EMPERNVISWSCLINGYFMRGKYKEALDLFREMQLPKPNEAFVKPNKFTLSTVLSAC 103
>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 558
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 64/184 (34%), Positives = 106/184 (57%), Gaps = 9/184 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ DV ++ Y G +D A + F++MPERD V W++MI + + EAL LFQ
Sbjct: 116 DSDVYVQNGLIHFYGCCGFLDFALKVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQR 175
Query: 63 MQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
MQ + DE ++S+++A + L L+LG+WI+ +I +N ++ + G AL+DM+ C
Sbjct: 176 MQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCG 235
Query: 122 DVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+E++ +++ +WT +I GLA+ G +AL MF +M +PD V + GVL
Sbjct: 236 CIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLV 295
Query: 174 ACTH 177
AC+H
Sbjct: 296 ACSH 299
Score = 55.8 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 14/125 (11%)
Query: 62 EMQTSNIMGDEFTIVSILTARANLR-ALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M + + D FT +L A A L+ LDL + + K +D++ N LI Y C
Sbjct: 77 KMAMAGVSPDHFTFPFVLKACARLQTGLDL----HSLLFKLGFDSDVYVQNGLIHFYGCC 132
Query: 121 ADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGV 171
+ E ++D SW++MI A +G G +AL +F +M L ++KPDEV + V
Sbjct: 133 GFLDFALKVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSV 192
Query: 172 LSACT 176
+SA +
Sbjct: 193 VSAIS 197
>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 663
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 102/182 (56%), Gaps = 8/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ A+++ Y + +A++ FD MP+R + W ++I GY + +E++ LF M
Sbjct: 223 DMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMM 282
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
S D TIVS+L++ + L ALD G W+ Y D N ++ G +LI+MY C +V
Sbjct: 283 ESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVS 342
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
KA +++ +WT MI G + G G +A+++F++M +P+ + +V VLSAC
Sbjct: 343 KAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACA 402
Query: 177 HN 178
H+
Sbjct: 403 HS 404
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 85/180 (47%), Gaps = 13/180 (7%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+V+ T++++ Y G V AR+ FD M ER+ V WTAMI GY R+A+ LF EM+
Sbjct: 324 NVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMR 383
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWI-----KTY-----IDKNKVKNDIFAGNALI 114
+ T V++L+A A+ +D G + + Y ++ N D+F L+
Sbjct: 384 AYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLL 443
Query: 115 -DMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
D Y + WT+M+ + N D + + +L S++P+ + +LS
Sbjct: 444 NDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVL--SVEPENPGHYVMLS 501
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 85/175 (48%), Gaps = 8/175 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T ++S G + AR+ F +P D L+ +++ + + + ++ M S
Sbjct: 127 TKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAP 186
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
+T S++ A A+L AL LG+ I +++ +D++ ALI +Y +D++ A
Sbjct: 187 QSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKV 246
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
Q+ +W ++I G +G +++ +F M+ + +PD V +LS+C+
Sbjct: 247 FDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCS 301
>gi|399107022|gb|AFP20299.1| At3g62890-like protein, partial [Capsella grandiflora]
Length = 183
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 101/165 (61%), Gaps = 14/165 (8%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+KD+ +W ++V+ Y G +D AR+ FD+MPER+ + W+ +I+GY +++EAL LF+E
Sbjct: 19 SKDLPAWNSVVNSYAKAGFLDDARKLFDEMPERNVISWSCLINGYFMRGKYKEALDLFRE 78
Query: 63 MQTSN-----IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
MQ + ++FT+ ++L+A L AL+ G+W+ YIDK++V+ DI G ALIDMY
Sbjct: 79 MQLPKPNEAFVKPNKFTLSTVLSACGRLGALEQGKWVHAYIDKHQVEIDIVLGTALIDMY 138
Query: 118 CICADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMF 153
C +E+A +KD +++ MI LA+ G D +F
Sbjct: 139 AKCGSLERAKRVFTALGSKKDVQAYSAMICCLAMYGLTDDCFQLF 183
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 13/86 (15%)
Query: 103 VKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFS 154
V D+ A N++++ Y ++ A+K + SW+ +I G + G +ALD+F
Sbjct: 18 VSKDLPAWNSVVNSYAKAGFLDDARKLFDEMPERNVISWSCLINGYFMRGKYKEALDLFR 77
Query: 155 QML-----RASIKPDEVAYVGVLSAC 175
+M A +KP++ VLSAC
Sbjct: 78 EMQLPKPNEAFVKPNKFTLSTVLSAC 103
>gi|147788829|emb|CAN73311.1| hypothetical protein VITISV_018159 [Vitis vinifera]
Length = 725
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 69/187 (36%), Positives = 110/187 (58%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++I A++ Y+ G + A+ F +M RD + WT M+ G + EA+ +F
Sbjct: 138 MDGDNIILDNALLDFYVKCGYLVSAKYLFMKMFRRDVISWTTMVGGLAQGGLCEEAVEVF 197
Query: 61 QEM-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYID-KNKVKNDIFAGNALIDMYC 118
Q M + + +E T+V++LTA ++L AL+LG W+ +YI + + D GNALI+MY
Sbjct: 198 QAMVKGGEAVPNEVTLVNVLTACSSLSALNLGRWVHSYISIRYDLVVDGNVGNALINMYA 257
Query: 119 ICADV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C+D+ E KD SW+T+I G+A++G+G AL FS ML + PD+V ++G
Sbjct: 258 KCSDMYMAVRVFNELTHKDMISWSTIIGGMAMNGHGMHALQFFSLMLVHGVSPDDVTFIG 317
Query: 171 VLSACTH 177
+LSAC+H
Sbjct: 318 LLSACSH 324
Score = 82.8 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 12/181 (6%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ ++ Y+ A+ F + D V WT++I G + EA+ F M
Sbjct: 44 DIFIQNTLLHSYVVENNXVFAKSVFKSISSPDVVSWTSIISGLSKCGFDEEAIGEFLSM- 102
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
++ + T+VS+++A LRA+ G+ I Y ++ ++I NAL+D Y C +
Sbjct: 103 --DVKPNTSTLVSVVSACCGLRAVRFGKAIHGYSLRSMDGDNIILDNALLDFYVKCGYLV 160
Query: 125 KAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVGVLSAC 175
A+ +D SWTTM+ GLA G ++A+++F M++ P+EV V VL+AC
Sbjct: 161 SAKYLFMKMFRRDVISWTTMVGGLAQGGLCEEAVEVFQAMVKGGEAVPNEVTLVNVLTAC 220
Query: 176 T 176
+
Sbjct: 221 S 221
Score = 43.5 bits (101), Expect = 0.036, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 11/113 (9%)
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK-- 128
+ FT L A ++L AL I K+ +DIF N L+ Y + + A+
Sbjct: 9 NHFTFTHALIASSSLHALHKTLEIHARAIKSGHYSDIFIQNTLLHSYVVENNXVFAKSVF 68
Query: 129 ------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
D SWT++I GL+ G ++A+ F M +KP+ V V+SAC
Sbjct: 69 KSISSPDVVSWTSIISGLSKCGFDEEAIGEFLSM---DVKPNTSTLVSVVSAC 118
>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 599
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 102/182 (56%), Gaps = 8/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ A+++ Y + +A++ FD MP+R + W ++I GY + +E++ LF M
Sbjct: 159 DMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMM 218
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
S D TIVS+L++ + L ALD G W+ Y D N ++ G +LI+MY C +V
Sbjct: 219 ESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVS 278
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
KA +++ +WT MI G + G G +A+++F++M +P+ + +V VLSAC
Sbjct: 279 KAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACA 338
Query: 177 HN 178
H+
Sbjct: 339 HS 340
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 85/180 (47%), Gaps = 13/180 (7%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+V+ T++++ Y G V AR+ FD M ER+ V WTAMI GY R+A+ LF EM+
Sbjct: 260 NVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMR 319
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWI-----KTY-----IDKNKVKNDIFAGNALI 114
+ T V++L+A A+ +D G + + Y ++ N D+F L+
Sbjct: 320 AYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLL 379
Query: 115 -DMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
D Y + WT+M+ + N D + + +L S++P+ + +LS
Sbjct: 380 NDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVL--SVEPENPGHYVMLS 437
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 85/175 (48%), Gaps = 8/175 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T ++S G + AR+ F +P D L+ +++ + + + ++ M S
Sbjct: 63 TKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAP 122
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
+T S++ A A+L AL LG+ I +++ +D++ ALI +Y +D++ A
Sbjct: 123 QSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKV 182
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
Q+ +W ++I G +G +++ +F M+ + +PD V +LS+C+
Sbjct: 183 FDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCS 237
>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
Length = 644
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 65/185 (35%), Positives = 97/185 (52%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+ +SWT+++ R +D AR F+Q+PE+ + W AMI Y++ RF EAL L+
Sbjct: 272 MPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLY 331
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M+ + DEFT+ ++L+A L L G+ I I N + N+L+DMY C
Sbjct: 332 NRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARC 391
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
V+ A K+ SW +I LA+ G AL F M+ + PDE+ +V +L
Sbjct: 392 GQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRSMVSDAFPPDEITFVALL 451
Query: 173 SACTH 177
SAC H
Sbjct: 452 SACNH 456
Score = 102 bits (253), Expect = 8e-20, Method: Composition-based stats.
Identities = 62/204 (30%), Positives = 101/204 (49%), Gaps = 39/204 (19%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y + G + +R+ FD+M +R+ V W +MI+GY + REA +LF+ M+ ++
Sbjct: 150 ALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLA 209
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--- 127
DEFT+VS+L A + L+ G+ + +++ + D+ NAL+DMY C D+ A
Sbjct: 210 DEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCF 269
Query: 128 -----KDKFSWTTMIVGLA--------------------ISGNG-----------DKALD 151
K+ SWT+M+ LA IS N +ALD
Sbjct: 270 DMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALD 329
Query: 152 MFSQMLRASIKPDEVAYVGVLSAC 175
++++M + PDE VLSAC
Sbjct: 330 LYNRMKLLGLAPDEFTLAAVLSAC 353
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 8/165 (4%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G V ARQ FD++P+ D ++ ++I Y + +EAL L + M I+ +EFT+ +L
Sbjct: 58 GGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLL 117
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKF 131
A A ++A + + K +F GNAL+ Y + E ++
Sbjct: 118 KACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVV 177
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
SW +MI G A +GN +A +F M R + DE V +L AC+
Sbjct: 178 SWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACS 222
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 25/173 (14%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N V + +++ Y GQVD A F +MP ++ + W A+I R ++AL F+
Sbjct: 375 NPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRS 434
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M + DE T V++L+A + L+ G++ Y A+ +Y +
Sbjct: 435 MVSDAFPPDEITFVALLSACNHGGLLEAGQY---YF------------QAMRHVYNVKPG 479
Query: 123 VEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
VE + M+ L G KA+D+ M ++PD V + +L AC
Sbjct: 480 VEH-------YACMVDLLGRGGQLAKAVDLIKDM---PMRPDVVVWGALLGAC 522
>gi|341607413|gb|AEK83809.1| At3g62890-like protein [Capsella rubella]
gi|341607415|gb|AEK83810.1| At3g62890-like protein [Capsella rubella]
gi|341607417|gb|AEK83811.1| At3g62890-like protein [Capsella rubella]
gi|341607419|gb|AEK83812.1| At3g62890-like protein [Capsella rubella]
gi|341607421|gb|AEK83813.1| At3g62890-like protein [Capsella rubella]
gi|341607423|gb|AEK83814.1| At3g62890-like protein [Capsella rubella]
gi|341607425|gb|AEK83815.1| At3g62890-like protein [Capsella rubella]
gi|341607427|gb|AEK83816.1| At3g62890-like protein [Capsella rubella]
gi|399107026|gb|AFP20301.1| At3g62890-like protein, partial [Capsella grandiflora]
Length = 183
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 101/165 (61%), Gaps = 14/165 (8%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+KD+ +W ++V+ Y G +D AR FD+MPER+ + W+ +I+GY +++EAL LF+E
Sbjct: 19 SKDLPAWNSVVNSYAKAGFLDDARTLFDEMPERNVISWSCLINGYFMRGKYKEALDLFRE 78
Query: 63 MQTSN-----IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
MQ + ++FT+ ++L+A L AL+ G+W+ YIDK++V+ DI G ALIDMY
Sbjct: 79 MQLPKPNEAFVEPNKFTLSTVLSACGRLGALEQGKWVHAYIDKHQVEIDIVLGTALIDMY 138
Query: 118 CICADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMF 153
C +E+A +KD +++ MI LA+ G D+ +F
Sbjct: 139 AKCGSLERAKRVFTALGSKKDVQAYSAMICCLAMYGLTDECFQLF 183
>gi|297744641|emb|CBI37903.3| unnamed protein product [Vitis vinifera]
Length = 516
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 105/187 (56%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV++WT +VS Y G + A + F +MPE++ V WTA+I GY R +AL LF
Sbjct: 253 MSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELF 312
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M ++ D+FT S L A A++ +L G+ I Y+ + + + +ALIDMY C
Sbjct: 313 TKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKC 372
Query: 121 ADVEKAQK---------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
+ +K D W T+I LA G G++A+ M M+R+ KPD++ +V +
Sbjct: 373 GSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVI 432
Query: 172 LSACTHN 178
L+AC+H+
Sbjct: 433 LNACSHS 439
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 93/215 (43%), Gaps = 39/215 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ SW ++S Y G + AR+ FD+MPE+D V W M+ + + + EAL +
Sbjct: 121 MSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFY 180
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
E + I + F+ +LT L+ + L + I +++ ++++D Y C
Sbjct: 181 SEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKC 240
Query: 121 A---------------------------------------DVEKAQKDKFSWTTMIVGLA 141
VE +K+ SWT +I G A
Sbjct: 241 GLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYA 300
Query: 142 ISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+G G KAL++F++M+ ++PD+ + L AC
Sbjct: 301 RNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACA 335
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 74/184 (40%), Gaps = 41/184 (22%)
Query: 33 PERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGE 92
P R L A++ + N+ EA++ + + + D T+ S+L A+ RAL G+
Sbjct: 21 PRRRPCLVEAIVK-LCKKNKLNEAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGK 79
Query: 93 WIKTYIDKNKVKND-IFAGNALIDMYCICA-DVEK------------------------- 125
+ ++ +K F N LI+MY C +VE
Sbjct: 80 RVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKL 139
Query: 126 -------------AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+KD SW TM++ A G D+AL +S+ + I+ + ++ GVL
Sbjct: 140 GMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVL 199
Query: 173 SACT 176
+ C
Sbjct: 200 TVCV 203
>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
lyrata]
gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
lyrata]
Length = 1057
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 102/183 (55%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N D+ + +A+++ Y N + +R FD+M +D V+W +M GY++ + EAL LF E
Sbjct: 486 NLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQSENEEALNLFLE 545
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+Q S DEFT V ++TA NL +L LG+ + K ++ + + NAL+DMY C
Sbjct: 546 LQLSRDRPDEFTFVDMVTAAGNLASLQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGS 605
Query: 123 VEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
E A K D W ++I A G G KAL M +M+ I+P+ + +VGVLSA
Sbjct: 606 PEDAHKAFDSAASRDVVCWNSVISSYANHGEGRKALQMLEKMMCEGIEPNYITFVGVLSA 665
Query: 175 CTH 177
C+H
Sbjct: 666 CSH 668
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 8/181 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++DV T ++ Y+ G +D AR FD +PE+ V WT MI G +++ R +L LF +
Sbjct: 180 DRDVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQ 239
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ N++ D + + ++L+A + L L+ G+ I +I + + D N LID Y C
Sbjct: 240 LMEGNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGR 299
Query: 123 VEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
V A K+ SWTT++ G + +A+++F+ M + +KPD A +L++
Sbjct: 300 VRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTS 359
Query: 175 C 175
C
Sbjct: 360 C 360
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 90/184 (48%), Gaps = 11/184 (5%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
KD ++ Y+ G+V A + FD MP ++ + WT ++ GY + + +EA+ LF
Sbjct: 280 HEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFT 339
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
M + D F SILT+ A+L AL+ G + Y K + ND + N+LIDMY C
Sbjct: 340 SMPKFGLKPDMFACSSILTSCASLHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCD 399
Query: 122 DVEKAQK--------DKFSWTTMIVGLAISGNG---DKALDMFSQMLRASIKPDEVAYVG 170
+ +A+K D + MI G + G AL++F M I+P + +V
Sbjct: 400 CLTEARKVFDIFAADDVVLFNAMIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVS 459
Query: 171 VLSA 174
+L A
Sbjct: 460 LLRA 463
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 85/161 (52%), Gaps = 11/161 (6%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVN---RFREALTLFQEMQTSNIMGDEFTIVSILTA 81
AR+ FD D VL+ AMI+GY R+ +AL +F +M+ I T VS+L A
Sbjct: 404 ARKVFDIFAADDVVLFNAMIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRA 463
Query: 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSW 133
A+L +L L + I + K + DIFAG+ALI +Y C ++ ++ KD W
Sbjct: 464 SASLTSLGLSKQIHGLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIW 523
Query: 134 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+M G ++AL++F ++ + +PDE +V +++A
Sbjct: 524 NSMFSGYVQQSENEEALNLFLELQLSRDRPDEFTFVDMVTA 564
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 89/178 (50%), Gaps = 15/178 (8%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-QTSNIMG 70
+++ Y G + AR+ F++MPER+ V W+ M+ + E+L +F + +T
Sbjct: 85 LMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHHGFYEESLVVFLDFWRTRKNSP 144
Query: 71 DEFTIVSILTARANLRALDLGEW----IKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126
+E+ + S + A + L G W +++++ K++ D++ G LID Y +++ A
Sbjct: 145 NEYILSSFIQACSGLDGS--GRWMVFQLQSFLVKSRFDRDVYVGTLLIDFYLKEGNIDYA 202
Query: 127 --------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+K +WTTMI G G +L +F Q++ ++ PD VLSAC+
Sbjct: 203 RLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILSTVLSACS 260
>gi|242063604|ref|XP_002453091.1| hypothetical protein SORBIDRAFT_04g038305 [Sorghum bicolor]
gi|241932922|gb|EES06067.1| hypothetical protein SORBIDRAFT_04g038305 [Sorghum bicolor]
Length = 514
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 101/191 (52%), Gaps = 17/191 (8%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
+ DV SWT++++ GQV+ AR FD MP R+ V W+AM+ Y+ F +A+ LF+
Sbjct: 152 RAADVCSWTSLLTACAKAGQVEEARALFDGMPRRNDVAWSAMLSAYVAAGSFDDAVRLFE 211
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIK------TYIDKNKVKNDIFAGNALID 115
+M S + + +V +L A L ALD G W+ T+ D AL+D
Sbjct: 212 DMLRSGVRPNRAAVVGVLAACGALGALDQGRWVHALLVSGTHGGDGATAMDGVVATALVD 271
Query: 116 MYCIC-----------ADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 164
MY C A ++Q+D F++T MI GL+ G +A+D+F QM ++P+
Sbjct: 272 MYAKCGSLDTARQVFAAAAPRSQRDVFAYTAMISGLSDHGRCGEAIDLFGQMQAEGVRPN 331
Query: 165 EVAYVGVLSAC 175
EV ++ VL+AC
Sbjct: 332 EVTFICVLTAC 342
>gi|357130605|ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Brachypodium distachyon]
Length = 670
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 102/182 (56%), Gaps = 9/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+I ++++ Y G + A F+ M RD V WTAM+ GY++ +FR A LF +M+
Sbjct: 358 DIILQNSLINMYAKCGDMAAAEIIFENMARRDIVSWTAMVCGYVKGLQFRTAFNLFDDMK 417
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
++M E +VS+L+A + L ALD G I +YI + V+ D++ +AL+DMY C ++
Sbjct: 418 VRDVMASEMALVSLLSACSQLGALDKGREIHSYIKEKSVRTDMWLESALVDMYAKCGCID 477
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVAYVGVLSAC 175
A K +W MI GLA G G +A+ +F Q+L+ KPD + VL AC
Sbjct: 478 AAAEIFSRMRHKQTLAWNAMIGGLASQGQGKEAVALFEQLLKLRDPKPDAITLKVVLCAC 537
Query: 176 TH 177
TH
Sbjct: 538 TH 539
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 95/180 (52%), Gaps = 8/180 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV A++ Y+ G + A + F MP R+ W +IDG+++ + +EALT+F+EM
Sbjct: 257 DVDIRNALIGMYVKCGCMSDAWKTFKGMPIRNTKSWNTLIDGFVQNGKHKEALTMFEEML 316
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ ++ D T+VS+L+ A L L G ++ YI +++ DI N+LI+MY C D+
Sbjct: 317 SDGVIPDVITLVSVLSTYAQLGDLQQGRYLHNYIKDHEIHCDIILQNSLINMYAKCGDMA 376
Query: 125 KAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A+ +D SWT M+ G A ++F M + E+A V +LSAC+
Sbjct: 377 AAEIIFENMARRDIVSWTAMVCGYVKGLQFRTAFNLFDDMKVRDVMASEMALVSLLSACS 436
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 93/177 (52%), Gaps = 8/177 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ + +++ Y V+ AR+ F++M ERD V WT MI + + ++ L EMQ
Sbjct: 156 DLFVMSGLINFYGASKSVEDARKVFEEMHERDVVSWTLMISAFAQCGQWDNVLRSLDEMQ 215
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ ++ TI+S+L+A +RA+D G W+ +D+ ++ D+ NALI MY C +
Sbjct: 216 SEGTKPNKITIISLLSACGQVRAVDKGLWVYARVDEYGIEADVDIRNALIGMYVKCGCMS 275
Query: 125 KAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
A K + SW T+I G +G +AL MF +ML + PD + V VLS
Sbjct: 276 DAWKTFKGMPIRNTKSWNTLIDGFVQNGKHKEALTMFEEMLSDGVIPDVITLVSVLS 332
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 11/175 (6%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
+++ ++R + AR+ FD+M + ++W MI GY + +AL LF+ M+ S + D
Sbjct: 59 LLASPVSRHDMPYARKVFDRMAQPTAIVWNCMIRGYNSCHAPMDALELFRAMRRSGVSPD 118
Query: 72 EFTIVSIL---TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
+T+ ++ A A+ + G+ + + + +D+F + LI+ Y VE A+K
Sbjct: 119 NYTMAAVAQSSAAFASWKGRATGDAVHALVQRIGFASDLFVMSGLINFYGASKSVEDARK 178
Query: 129 --------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
D SWT MI A G D L +M KP+++ + +LSAC
Sbjct: 179 VFEEMHERDVVSWTLMISAFAQCGQWDNVLRSLDEMQSEGTKPNKITIISLLSAC 233
>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 106/191 (55%), Gaps = 14/191 (7%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+S T++VS Y V AR F +M +R+ V W A+I GY + EAL LF
Sbjct: 310 MSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLF 369
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK------NKVKNDIFAGNALI 114
+ ++ +I +T ++L+A ANL L LG T++ K + ++DIF GN+LI
Sbjct: 370 RLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLI 429
Query: 115 DMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 166
DMY C +E ++D SW +IVG A +G G +AL +F +ML KPD V
Sbjct: 430 DMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHV 489
Query: 167 AYVGVLSACTH 177
+GVL AC+H
Sbjct: 490 TMIGVLCACSH 500
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 101/184 (54%), Gaps = 8/184 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ +W +++S G +D A + F MPE D W +M+ G+ + +RF E+L F
Sbjct: 76 MPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYF 135
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M + + +E++ S L+A A L L++G + + K++ D++ G+ALIDMY C
Sbjct: 136 VKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKC 195
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
V A +++ +W ++I +G +AL++F +M+ + ++PDEV V+
Sbjct: 196 GSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVV 255
Query: 173 SACT 176
SAC
Sbjct: 256 SACA 259
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 95/212 (44%), Gaps = 40/212 (18%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV +A++ Y G V A + F M ER+ V W ++I Y + EAL +F M
Sbjct: 181 DVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMM 240
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK-NKVKNDIFAGNALIDMYCICADV 123
S + DE T+ S+++A A+L AL G I + K NK ++D+ GNAL+DMY C+ V
Sbjct: 241 DSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKV 300
Query: 124 EKA---------------------------------------QKDKFSWTTMIVGLAISG 144
+A Q++ SW +I G +G
Sbjct: 301 NEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNG 360
Query: 145 NGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
++AL +F + R SI P + +LSAC
Sbjct: 361 ENEEALRLFRLLKRESIWPTHYTFGNLLSACA 392
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 78/171 (45%), Gaps = 26/171 (15%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ +++ Y+ G ++ + F++M ERD V W A+I GY + EAL +F++M
Sbjct: 421 DIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKML 480
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
D T++ +L A ++ ++ G +++ + LI +
Sbjct: 481 VCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEE----------HGLIPL-------- 522
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
KD + T M+ L +G ++A ++ M + PD V + +L+AC
Sbjct: 523 ---KDHY--TCMVDLLGRAGCLNEAKNLIEAM---PVNPDAVVWGSLLAAC 565
>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
[Vitis vinifera]
Length = 612
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 105/187 (56%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV++WT +VS Y G + A + F +MPE++ V WTA+I GY R +AL LF
Sbjct: 253 MSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELF 312
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M ++ D+FT S L A A++ +L G+ I Y+ + + + +ALIDMY C
Sbjct: 313 TKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKC 372
Query: 121 ADVEKAQK---------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
+ +K D W T+I LA G G++A+ M M+R+ KPD++ +V +
Sbjct: 373 GSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVI 432
Query: 172 LSACTHN 178
L+AC+H+
Sbjct: 433 LNACSHS 439
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 93/215 (43%), Gaps = 39/215 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ SW ++S Y G + AR+ FD+MPE+D V W M+ + + + EAL +
Sbjct: 121 MSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFY 180
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
E + I + F+ +LT L+ + L + I +++ ++++D Y C
Sbjct: 181 SEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKC 240
Query: 121 A---------------------------------------DVEKAQKDKFSWTTMIVGLA 141
VE +K+ SWT +I G A
Sbjct: 241 GLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYA 300
Query: 142 ISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+G G KAL++F++M+ ++PD+ + L AC
Sbjct: 301 RNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACA 335
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 74/184 (40%), Gaps = 41/184 (22%)
Query: 33 PERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGE 92
P R L A++ + N+ EA++ + + + D T+ S+L A+ RAL G+
Sbjct: 21 PRRRPCLVEAIVK-LCKKNKLNEAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGK 79
Query: 93 WIKTYIDKNKVKND-IFAGNALIDMYCICA-DVEK------------------------- 125
+ ++ +K F N LI+MY C +VE
Sbjct: 80 RVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKL 139
Query: 126 -------------AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+KD SW TM++ A G D+AL +S+ + I+ + ++ GVL
Sbjct: 140 GMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVL 199
Query: 173 SACT 176
+ C
Sbjct: 200 TVCV 203
>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g37380, chloroplastic; Flags: Precursor
gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
Length = 632
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 104/187 (55%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + ++S TA+++ Y +G V+ AR FD M ERD V W MIDGY + +AL LF
Sbjct: 187 MPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLF 246
Query: 61 QE-MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
Q+ + DE T+V+ L+A + + AL+ G WI ++ ++++ ++ LIDMY
Sbjct: 247 QKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSK 306
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVG 170
C +E+A +KD +W MI G A+ G AL +F++M ++P ++ ++G
Sbjct: 307 CGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIG 366
Query: 171 VLSACTH 177
L AC H
Sbjct: 367 TLQACAH 373
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 84/202 (41%), Gaps = 46/202 (22%)
Query: 16 YINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFR-EALTLFQEMQTSNIMGDEFT 74
Y + G++ + F Q + D L+TA I+ +N + +A L+ ++ +S I +EFT
Sbjct: 74 YASHGKIRHSLALFHQTIDPDLFLFTAAIN-TASINGLKDQAFLLYVQLLSSEINPNEFT 132
Query: 75 IVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK------ 128
S+L + + G+ I T++ K + D + L+D+Y DV AQK
Sbjct: 133 FSSLLKSCST----KSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMP 188
Query: 129 ---------------------------------DKFSWTTMIVGLAISGNGDKALDMFSQ 155
D SW MI G A G + AL +F +
Sbjct: 189 ERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQK 248
Query: 156 ML-RASIKPDEVAYVGVLSACT 176
+L KPDE+ V LSAC+
Sbjct: 249 LLAEGKPKPDEITVVAALSACS 270
>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 1058
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 101/181 (55%), Gaps = 7/181 (3%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD +SW +++S +D AR F++MP+RD V WTA+I Y++ AL LF +M
Sbjct: 619 KDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDM 678
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY--C--- 118
I ++ T+ S+L+A NL A+ LGE I K +F GN+LI MY C
Sbjct: 679 LARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYE 738
Query: 119 --ICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
C E + D +W ++VG A +G G +A+ +F QM I PD+++++GVL AC+
Sbjct: 739 DGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACS 798
Query: 177 H 177
H
Sbjct: 799 H 799
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 99/212 (46%), Gaps = 39/212 (18%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N +V++W AI++ Y G + A+ F +MP ++ W AMI G+++ REAL L E
Sbjct: 486 NPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIE 545
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ S + + + S L+A AN+ +++G I + K + + + N LI MY C +
Sbjct: 546 LHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGN 605
Query: 123 VEKAQ--------KDKFSWTTMIVGLA-------------------------------IS 143
VE KD SW ++I GL+ +
Sbjct: 606 VEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQA 665
Query: 144 GNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
G+G+ ALD+F ML IKP+++ +LSAC
Sbjct: 666 GHGEVALDLFLDMLARGIKPNQLTVTSLLSAC 697
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 91/169 (53%), Gaps = 8/169 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V SW ++V+ Y + ++ AR+ FDQMPER+ V W MI GY+ ++ + EA +F
Sbjct: 290 MPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVF 349
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M + D+ V +L+A L L+L ++ K + D+ G+A+++ Y
Sbjct: 350 VKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRN 409
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI 161
++ A +++++SWTTMI A G D A+ ++ ++ ++
Sbjct: 410 GSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTV 458
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 16/184 (8%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW ++++ Y G+VD AR FD ++ WT ++ GY + R EA +F
Sbjct: 197 MIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLTGYAKEGRIEEAREVF 256
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M N++ ++S +L+ + D+ KN + + N+++ YC C
Sbjct: 257 ESMTERNVVSWN-AMISGYVQNGDLKN------ARKLFDEMPEKN-VASWNSVVTGYCHC 308
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ +A +++ SW MI G + +A D+F +M R +PD+ +V VL
Sbjct: 309 YRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVL 368
Query: 173 SACT 176
SA T
Sbjct: 369 SAIT 372
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 16/179 (8%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV+ +AI++ Y G +D+A F+ MPER+ WT MI + + R +A+ L++ +
Sbjct: 395 DVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVP 454
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ T +++TA A + + I I + ++ A NA+I Y ++
Sbjct: 455 EQTVA----TKTAMMTAYAQVGRIQKARLIFDEI----LNPNVVAWNAIIAGYTQNGMLK 506
Query: 125 KAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+A+ K+ SW MI G + +AL++ ++ R+ P + ++ LSAC
Sbjct: 507 EAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSAC 565
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 25/147 (17%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88
F++MPE D + W A++ G + +EA+ +F++M+ I+ D+ + + +L A ++ +
Sbjct: 744 FEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLV 803
Query: 89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDK 148
D G W N++ Y I V + +T M+ L +G +
Sbjct: 804 DEG-WAHF--------------NSMTQKYGIMPLV-------YHYTCMVDLLGRAGYLSE 841
Query: 149 ALDMFSQMLRASIKPDEVAYVGVLSAC 175
A + M +KPD V + +L AC
Sbjct: 842 AEALIENM---PVKPDSVIWEALLGAC 865
>gi|125527494|gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
Length = 608
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 108/182 (59%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+++I TA++ Y+ +D AR+ FD+M +RD V W+ MI GY + R E+L LF+ M
Sbjct: 249 QNMIVHTALMEMYVKCQAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERM 308
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ ++ +E T+V +L+A A L + +LG I ++++ + + G+ALIDMY C V
Sbjct: 309 KATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHV 368
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+A K +W +M+ GLA++G A+ ++ +M ++P+E+ +V +L+AC
Sbjct: 369 GRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTAC 428
Query: 176 TH 177
TH
Sbjct: 429 TH 430
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 97/183 (53%), Gaps = 9/183 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD I +++ Y G V AR+ FD M R W +MI Y ++EAL LF
Sbjct: 146 MPVKDPIPMNCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLF 205
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M + + TI ++ + A L+ G+W ++ I + ++N + AL++MY C
Sbjct: 206 RRMLSEGARPNAITIATMFSICAKTGDLETGKWARSLIAEQDLQN-MIVHTALMEMYVKC 264
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+++A Q+D +W+TMI G A +G ++L++F +M S KP+EV VGVL
Sbjct: 265 QAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVL 324
Query: 173 SAC 175
SAC
Sbjct: 325 SAC 327
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRF-REALTLFQEMQTSNI 68
+A++ Y G V AR F++M + + W +M+ G L +N F ++A+TL++EM ++
Sbjct: 356 SALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRG-LALNGFAQDAITLYKEMTEEDV 414
Query: 69 MGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127
+E T V++LTA + +D G + K + V + ++D+ C + +A
Sbjct: 415 QPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKSGRLREAY 474
Query: 128 K 128
K
Sbjct: 475 K 475
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 8/142 (5%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
AR FD +P L +I R+ +E L F + + ++ + A
Sbjct: 38 ARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAI 97
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKFSWTTM 136
L A G+ + + + DIF AL+D Y D+ E KD +
Sbjct: 98 LAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCL 157
Query: 137 IVGLAISGNGDKALDMFSQMLR 158
I G + SG+ KA +F M+R
Sbjct: 158 ITGYSKSGDVVKARRLFDGMVR 179
>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Brachypodium distachyon]
Length = 610
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 62/183 (33%), Positives = 104/183 (56%), Gaps = 9/183 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
K+ + WTA++S Y+ G+ D A + F MP R WTA+I G++R A+ LF +M
Sbjct: 169 KNSVMWTALISGYVLNGRSDEALELFRSMPGRTLFAWTALISGFVRSGESVSAVKLFVDM 228
Query: 64 QTSNI-MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ + + D F + S + A+L A LG + + + + + GNA++DMY C+D
Sbjct: 229 RRDGVSIDDAFVLSSAIGGAADLAAHVLGRQLHSLTMRLGFSSSMIVGNAVVDMYSKCSD 288
Query: 123 VEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+ A+ +D SWTTM+VG A G ++A ++ +M+ A +KP+EV +VG++ A
Sbjct: 289 IHSAREVFEEITGRDIISWTTMLVGEAQHGRAEEAFSLYDRMVLAGVKPNEVTFVGLIYA 348
Query: 175 CTH 177
C+H
Sbjct: 349 CSH 351
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 9/154 (5%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM-G 70
+VS Y + R FD+ P RD L+++++ L L + M +++ +
Sbjct: 44 LVSAYAKSRLLPDTRLLFDETPRRDLHLYSSLLAAVSHSESPELVLPLLRRMLSADALRP 103
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--- 127
D F + SI +A A LR+L LG+ + + + +D ++LIDMYC C + A+
Sbjct: 104 DHFVLASIASATARLRSLCLGKQLHGHFVASPYSSDDVVKSSLIDMYCKCGVPDDARKVF 163
Query: 128 -----KDKFSWTTMIVGLAISGNGDKALDMFSQM 156
K+ WT +I G ++G D+AL++F M
Sbjct: 164 DSIVAKNSVMWTALISGYVLNGRSDEALELFRSM 197
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 41/173 (23%), Positives = 74/173 (42%), Gaps = 25/173 (14%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ +I A+V Y + AR+ F+++ RD + WT M+ G + R EA +L+
Sbjct: 270 SSSMIVGNAVVDMYSKCSDIHSAREVFEEITGRDIISWTTMLVGEAQHGRAEEAFSLYDR 329
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M + + +E T V ++ A ++ + G + D K + I N + Y D
Sbjct: 330 MVLAGVKPNEVTFVGLIYACSHAGLVQKG---RQLFDSMKGEYGI---NPRLQHYTCYLD 383
Query: 123 VEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ L+ SG+ +A ++ + M PDE + +LSAC
Sbjct: 384 L----------------LSRSGHLAEAEELITTM---PYVPDEATWASLLSAC 417
>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 643
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 108/186 (58%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ SW +++ Y G++++AR+ F +MP +D V W+ MI G+ F EA F
Sbjct: 198 MPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFF 257
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+E+Q + +E ++ L+A A+ A++ G+ + +I+K+ + NAL+D Y C
Sbjct: 258 RELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKC 317
Query: 121 ADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
+V A ++ SWT+MI GLA+ G G++A+ +F +M + I+PD +A++ +
Sbjct: 318 GNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISI 377
Query: 172 LSACTH 177
L AC+H
Sbjct: 378 LYACSH 383
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 11/146 (7%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPE-RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
A++ Y G V +AR F++MPE R V WT+MI G EA+ LF EM+ S I
Sbjct: 309 ALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIR 368
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
D +SIL A ++ ++ G E+ D ++ I ++D+Y ++KA +
Sbjct: 369 PDGIAFISILYACSHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYE 428
Query: 129 ---------DKFSWTTMIVGLAISGN 145
W T++ +I GN
Sbjct: 429 FIIHMPVLPTAIIWRTLLGACSIHGN 454
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 13/146 (8%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ---TSNIMGDEFTIVSI 78
+D AR+ F P D + +I G + + +L F EM+ T+ + D F+ +
Sbjct: 55 LDYARRLFLHFPNPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPL--DSFSFAFL 112
Query: 79 LTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DK 130
L A A+ R+L+ G + + + +F G L+ MY C V A+K +
Sbjct: 113 LKAAASYRSLESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNV 172
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQM 156
+W ++ G+ A MF++M
Sbjct: 173 VAWNAVVTACFRCGDVKGADMMFNRM 198
>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Brachypodium distachyon]
Length = 617
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 62/183 (33%), Positives = 107/183 (58%), Gaps = 9/183 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
++ + WTA+VS Y++ G V+ A Q F+ MP R V W A++ GY++ +R +AL +F+ M
Sbjct: 176 ENAVLWTAMVSGYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTM 235
Query: 64 -QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ +++ +E T+ S+L +NL AL G + + K + + AG +L+ MYC C D
Sbjct: 236 VRDADVRPNESTLSSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGD 295
Query: 123 VEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
++ A K D +W MI G A G+G +A+++F +M ++P+ + +V VL+A
Sbjct: 296 LDGACKLFSEMRIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTA 355
Query: 175 CTH 177
C H
Sbjct: 356 CIH 358
Score = 59.3 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++ V + T++VS Y G +D A + F +M RD + W AMI GY REA+ LF++
Sbjct: 277 SRRVTAGTSLVSMYCKCGDLDGACKLFSEMRIRDVIAWNAMISGYAHHGDGREAIELFEK 336
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
M++ + + T V++LTA + D G + + + ++ + + ++D+ C
Sbjct: 337 MKSQGVEPNWITFVAVLTACIHTGMCDFGMQCFERMQEVYGIEARVDHYSCMVDLLCRAG 396
Query: 122 DVEKA 126
+E+A
Sbjct: 397 SLERA 401
>gi|341606387|gb|AEK83296.1| At3g62890-like protein [Capsella grandiflora]
Length = 183
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 100/165 (60%), Gaps = 14/165 (8%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+KD+ +W ++V Y G +B AR+ FD+MPER+ + W+ +I+GY +++EAL LF+E
Sbjct: 19 SKDLPAWNSVVYSYAKAGFLBDARKLFDEMPERNVISWSCLINGYFMRGKYKEALDLFRE 78
Query: 63 MQTSN-----IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
MQ + ++FT+ ++L+A L AL+ G+W+ YIDK++V DI G ALIDMY
Sbjct: 79 MQLPKPNEAFVKPNKFTLSTVLSACGRLGALEQGKWVHAYIDKHQVXIDIVLGTALIDMY 138
Query: 118 CICADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMF 153
C +E+A +KD +++ MI LA+ G D+ +F
Sbjct: 139 AKCGSLERAKRVFTALGSKKDVQAYSAMICXLAMYGLTDECFQLF 183
Score = 36.2 bits (82), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQML-----RASIKPDEVAYVGVLSAC 175
E +++ SW+ +I G + G +ALD+F +M A +KP++ VLSAC
Sbjct: 47 EMPERNVISWSCLINGYFMRGKYKEALDLFREMQLPKPNEAFVKPNKFTLSTVLSAC 103
>gi|255547359|ref|XP_002514737.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546341|gb|EEF47843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 374
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 98/164 (59%), Gaps = 9/164 (5%)
Query: 23 DIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR 82
+I+RQ F+++P + V W +I Y+ RF+EAL +F M +I DE T+V IL A
Sbjct: 184 EISRQLFEEIPSPELVAWNTVIGCYVDCGRFKEALDMFSRMLKLHIEPDEATLVVILAAC 243
Query: 83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWT 134
+ L LD+G WI + I + + N++IDMY C +E+A Q++ +W
Sbjct: 244 SALGELDIGRWIHSCISNTGLGRFVEINNSIIDMYAKCGALEEAYEAFNKMSQRNTVTWN 303
Query: 135 TMIVGLAISGNGDKALDMFSQMLRASI-KPDEVAYVGVLSACTH 177
TMI+GLA G+ ++AL +FS+ML + +PD V ++GVL AC+H
Sbjct: 304 TMILGLATHGHTNEALVLFSKMLEQKLMEPDSVTFLGVLCACSH 347
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88
F+ + D LW MI G+ + N + A ++ MQ +M D FT ++ L ++
Sbjct: 89 FENIECPDEFLWNTMIRGFGKSNEPQRAFEYYKRMQEEGLMADNFTFSFLIKVCGQLGSV 148
Query: 89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTMIVGL 140
LG+ + + K ++ +F N LI MY I D E +++ + +W T+I
Sbjct: 149 LLGKQMHCSVLKYGFESHVFVRNTLIHMYGIFKDFEISRQLFEEIPSPELVAWNTVIGCY 208
Query: 141 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
G +ALDMFS+ML+ I+PDE V +L+AC+
Sbjct: 209 VDCGRFKEALDMFSRMLKLHIEPDEATLVVILAACS 244
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM- 69
+I+ Y G ++ A + F++M +R+ V W MI G EAL LF +M +M
Sbjct: 273 SIIDMYAKCGALEEAYEAFNKMSQRNTVTWNTMILGLATHGHTNEALVLFSKMLEQKLME 332
Query: 70 GDEFTIVSILTARAN 84
D T + +L A ++
Sbjct: 333 PDSVTFLGVLCACSH 347
>gi|115439575|ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza sativa Japonica Group]
gi|125571815|gb|EAZ13330.1| hypothetical protein OsJ_03251 [Oryza sativa Japonica Group]
Length = 608
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 108/182 (59%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+++I TA++ Y+ +D AR+ FD+M +RD V W+ MI GY + R E+L LF+ M
Sbjct: 249 QNMIVHTALMEMYVKCRAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERM 308
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ ++ +E T+V +L+A A L + +LG I ++++ + + G+ALIDMY C V
Sbjct: 309 KATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHV 368
Query: 124 EKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+A K +W +M+ GLA++G A+ ++ +M ++P+E+ +V +L+AC
Sbjct: 369 GRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTAC 428
Query: 176 TH 177
TH
Sbjct: 429 TH 430
Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 97/183 (53%), Gaps = 9/183 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD I +++ Y G V AR+ FD M R W +MI Y ++EAL LF
Sbjct: 146 MPVKDPIPMNCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLF 205
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M + + TI ++ + A L+ G+W ++ I + ++N + AL++MY C
Sbjct: 206 RRMLSEGARPNAITIATMFSICAKTGDLETGKWARSLIAEQDLQN-MIVHTALMEMYVKC 264
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+++A Q+D +W+TMI G A +G ++L++F +M S KP+EV VGVL
Sbjct: 265 RAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVL 324
Query: 173 SAC 175
SAC
Sbjct: 325 SAC 327
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRF-REALTLFQEMQTSNI 68
+A++ Y G V AR F++M + + W +M+ G L +N F ++A+TL++EM ++
Sbjct: 356 SALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRG-LALNGFAQDAITLYKEMTEEDV 414
Query: 69 MGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127
+E T V++LTA + +D G + K + V + ++D+ C + +A
Sbjct: 415 QPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKSGRLREAY 474
Query: 128 K 128
K
Sbjct: 475 K 475
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 8/142 (5%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
AR FD +P L +I R+ +E L F + + ++ + A
Sbjct: 38 ARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAI 97
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKFSWTTM 136
L A G+ + + + DIF AL+D Y D+ E KD +
Sbjct: 98 LAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCL 157
Query: 137 IVGLAISGNGDKALDMFSQMLR 158
I G + SG+ KA +F M+R
Sbjct: 158 ITGYSKSGDVVKARRLFDGMVR 179
>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
Length = 640
Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats.
Identities = 64/186 (34%), Positives = 104/186 (55%), Gaps = 13/186 (6%)
Query: 6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT 65
V+S TA+++ Y G +D AR FD +P +D + W AM+DGY + R EAL LF+ M
Sbjct: 193 VVSVTAMLTCYAKMGLLDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLR 252
Query: 66 SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN---KVKNDIFAGNALIDMYCICAD 122
S + DE ++V L+A A L + G W+ +++ + +V+ + G ALIDMY C
Sbjct: 253 SGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMYYKCGS 312
Query: 123 VEKA----------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E A +D +W M+ G A+ G+ +AL F Q+ + P ++ ++GVL
Sbjct: 313 LEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGHSREALAAFGQLRAQGLWPTDITFIGVL 372
Query: 173 SACTHN 178
+AC+H+
Sbjct: 373 NACSHS 378
Score = 52.4 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 26/168 (15%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMP--ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN 67
TA++ Y G ++ A F + +RD V W AM++GY REAL F +++
Sbjct: 301 TALIDMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGHSREALAAFGQLRAQG 360
Query: 68 IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127
+ + T + +L A ++ +D G ++F ++ + Y I VE
Sbjct: 361 LWPTDITFIGVLNACSHSGLVDEGR-------------ELF--RSMAEEYGIEPKVEH-- 403
Query: 128 KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ L +G ++A ++ M R KPD V + +L+AC
Sbjct: 404 -----YGCMVDLLGRAGRVEEAFELVQSMTRT--KPDAVMWASLLAAC 444
>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
Length = 611
Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats.
Identities = 67/175 (38%), Positives = 100/175 (57%), Gaps = 8/175 (4%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
+++ Y G V AR FD+M V + AMI +R + EAL LF+EMQ +
Sbjct: 179 LINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPT 238
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA----- 126
T++S+L+A A L AL+LG WI YI K ++ + + ALIDMY C +E A
Sbjct: 239 SVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQ 298
Query: 127 ---QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+DK +W+ M+V A G G +A+ MF +M + +KPD+V ++GVL AC+H+
Sbjct: 299 DMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHS 353
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 51/164 (31%), Positives = 72/164 (43%), Gaps = 13/164 (7%)
Query: 25 ARQCFDQMPERDYVLW-TAMIDGYLRVNRF----REALTLFQEMQTSNIMGDEFTIVSIL 79
ARQ FD++P V+W ++ GY R EA +F M + D +T VS+L
Sbjct: 86 ARQVFDRIPHPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPDTYTFVSLL 145
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--DKF------ 131
A A+ RA + G K + LI+MY C DV A+ D+
Sbjct: 146 KACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVV 205
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
S+ MI S +AL +F +M +KP V + VLSAC
Sbjct: 206 SYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSAC 249
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 36/157 (22%), Positives = 69/157 (43%), Gaps = 9/157 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ Y G ++ A F M RD W+ M+ Y REA+++F+EM+ +
Sbjct: 278 TALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMK 337
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK- 128
D+ T + +L A ++ + G + + + + I + D+ +E+A K
Sbjct: 338 PDDVTFLGVLYACSHSGMVSEGLQYFDSMREYGIVSGIKHYGCVTDLLARSGQLERAYKF 397
Query: 129 -DKFS-------WTTMIVGLAISGNGDKALDMFSQML 157
D+ W T++ A G+ D +F ++L
Sbjct: 398 IDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERIL 434
>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
Length = 671
Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats.
Identities = 67/175 (38%), Positives = 100/175 (57%), Gaps = 8/175 (4%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
+++ Y G V AR FD+M V + AMI +R + EAL LF+EMQ +
Sbjct: 179 LINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPT 238
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA----- 126
T++S+L+A A L AL+LG WI YI K ++ + + ALIDMY C +E A
Sbjct: 239 SVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQ 298
Query: 127 ---QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+DK +W+ M+V A G G +A+ MF +M + +KPD+V ++GVL AC+H+
Sbjct: 299 DMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHS 353
Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 49/164 (29%), Positives = 69/164 (42%), Gaps = 13/164 (7%)
Query: 25 ARQCFDQMPERDYVLWTAMI-----DGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
ARQ FD++P V+W + G EA +F M + D +T VS+L
Sbjct: 86 ARQVFDRIPHPGDVIWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLL 145
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--DKF------ 131
A A+ RA + G K + LI+MY C DV A+ D+
Sbjct: 146 KACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVV 205
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
S+ MI S +AL +F +M +KP V + VLSAC
Sbjct: 206 SYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSAC 249
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 36/157 (22%), Positives = 69/157 (43%), Gaps = 9/157 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ Y G ++ A F M RD W+ M+ Y REA+++F+EM+ +
Sbjct: 278 TALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMK 337
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK- 128
D+ T + +L A ++ + G + + + + I + D+ +E+A K
Sbjct: 338 PDDVTFLGVLYACSHSGMVSEGLQYFDSMREYGIVSGIKHYGCVTDLLARSGQLERAYKF 397
Query: 129 -DKFS-------WTTMIVGLAISGNGDKALDMFSQML 157
D+ W T++ A G+ D +F ++L
Sbjct: 398 IDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERIL 434
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,650,699,090
Number of Sequences: 23463169
Number of extensions: 97144122
Number of successful extensions: 365497
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6646
Number of HSP's successfully gapped in prelim test: 2656
Number of HSP's that attempted gapping in prelim test: 281957
Number of HSP's gapped (non-prelim): 48197
length of query: 178
length of database: 8,064,228,071
effective HSP length: 133
effective length of query: 45
effective length of database: 9,238,593,890
effective search space: 415736725050
effective search space used: 415736725050
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 71 (32.0 bits)