BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036068
         (178 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1VG0|A Chain A, The Crystal Structures Of The Rep-1 Protein In Complex
           With Monoprenylated Rab7 Protein
 pdb|1VG9|A Chain A, The Crystal Structures Of The Rep-1 Protein In Complex
           With C-Terminally Truncated Rab7 Protein
 pdb|1VG9|C Chain C, The Crystal Structures Of The Rep-1 Protein In Complex
           With C-Terminally Truncated Rab7 Protein
 pdb|1VG9|E Chain E, The Crystal Structures Of The Rep-1 Protein In Complex
           With C-Terminally Truncated Rab7 Protein
 pdb|1VG9|G Chain G, The Crystal Structures Of The Rep-1 Protein In Complex
           With C-Terminally Truncated Rab7 Protein
          Length = 650

 Score = 29.6 bits (65), Expect = 0.86,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 16  YIN-RGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
           Y N R   DI+R C++ +P   YV  +    G    N  ++A TLFQ++
Sbjct: 548 YFNMRDSSDISRDCYNDLPSNVYVC-SGPDSGLGNDNAVKQAETLFQQI 595


>pdb|1LTX|R Chain R, Structure Of Rab Escort Protein-1 In Complex With Rab
           Geranylgeranyl Transferase And Isoprenoid
          Length = 650

 Score = 29.6 bits (65), Expect = 0.86,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 16  YIN-RGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
           Y N R   DI+R C++ +P   YV  +    G    N  ++A TLFQ++
Sbjct: 548 YFNMRDSSDISRDCYNDLPSNVYVC-SGPDSGLGNDNAVKQAETLFQQI 595


>pdb|1W7B|A Chain A, Annexin A2: Does It Induce Membrane Aggregation By A New
          Multimeric State Of The Protein
          Length = 339

 Score = 27.7 bits (60), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 44 IDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLG 91
          +  Y   +  R+AL +   ++T  +  DE TIV+ILT R+N +  D+ 
Sbjct: 27 VKAYTNFDAERDALNIETAIKTKGV--DEVTIVNILTNRSNEQRQDIA 72


>pdb|1XJL|A Chain A, Structure Of Human Annexin A2 In The Presence Of Calcium
          Ions
 pdb|1XJL|B Chain B, Structure Of Human Annexin A2 In The Presence Of Calcium
          Ions
          Length = 319

 Score = 27.7 bits (60), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 44 IDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLG 91
          +  Y   +  R+AL +   ++T  +  DE TIV+ILT R+N +  D+ 
Sbjct: 7  VKAYTNFDAERDALNIETAIKTKGV--DEVTIVNILTNRSNEQRQDIA 52


>pdb|2HYU|A Chain A, Human Annexin A2 With Heparin Tetrasaccharide Bound
 pdb|2HYV|A Chain A, Human Annexin A2 With Heparin Hexasaccharide Bound
 pdb|2HYW|A Chain A, Human Annexin A2 With Calcium Bound
 pdb|2HYW|B Chain B, Human Annexin A2 With Calcium Bound
          Length = 308

 Score = 27.3 bits (59), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)

Query: 54 REALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLG 91
          R+AL +   ++T  +  DE TIV+ILT R+N +  D+ 
Sbjct: 6  RDALNIETAIKTKGV--DEVTIVNILTNRSNAQRQDIA 41


>pdb|4GT6|A Chain A, Crystal Structure Of A Leucine Rich Cell Surface Protein
           (Faepraa2165_01021) From Faecalibacterium Prausnitzii
           A2-165 At 1.80 A Resolution
          Length = 394

 Score = 26.9 bits (58), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 6/69 (8%)

Query: 77  SILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTM 136
           S+     +L+++D+ E I   +D      D FAG   ++   I + V K  +  FS  T 
Sbjct: 305 SVFAGCISLKSIDIPEGITQILD------DAFAGCEQLERIAIPSSVTKIPESAFSNCTA 358

Query: 137 IVGLAISGN 145
           +  +  SG+
Sbjct: 359 LNNIEYSGS 367


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.135    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,062,403
Number of Sequences: 62578
Number of extensions: 190156
Number of successful extensions: 552
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 538
Number of HSP's gapped (non-prelim): 20
length of query: 178
length of database: 14,973,337
effective HSP length: 92
effective length of query: 86
effective length of database: 9,216,161
effective search space: 792589846
effective search space used: 792589846
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (23.1 bits)