BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036068
(178 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 226 bits (575), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 107/186 (57%), Positives = 139/186 (74%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK +DVISWT+IV Y+ RG + +AR FDQMP RD + WT MIDGYLR F E+L +F
Sbjct: 297 MKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIF 356
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ++ ++ DEFT+VS+LTA A+L +L++GEWIKTYIDKNK+KND+ GNALIDMY C
Sbjct: 357 REMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKC 416
Query: 121 ADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
EKAQK DKF+WT M+VGLA +G G +A+ +F QM SI+PD++ Y+GVL
Sbjct: 417 GCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVL 476
Query: 173 SACTHN 178
SAC H+
Sbjct: 477 SACNHS 482
Score = 86.7 bits (213), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 39/206 (18%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+V Y G +D+AR FD+ + D W MI GY R+ + E++ L EM+ + +
Sbjct: 175 ALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSP 234
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD-------- 122
T++ +L+A + ++ DL + + Y+ + K + + NAL++ Y C +
Sbjct: 235 TSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIF 294
Query: 123 ------------------VEKAQ-------------KDKFSWTTMIVGLAISGNGDKALD 151
VE+ +D+ SWT MI G +G +++L+
Sbjct: 295 RSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLE 354
Query: 152 MFSQMLRASIKPDEVAYVGVLSACTH 177
+F +M A + PDE V VL+AC H
Sbjct: 355 IFREMQSAGMIPDEFTMVSVLTACAH 380
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 84/166 (50%), Gaps = 9/166 (5%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G V A + F ++PE D V+W MI G+ +V+ E + L+ M + D T +L
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141
Query: 80 TA-RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDK 130
+ + AL G+ + ++ K + ++++ NAL+ MY +C ++ A ++D
Sbjct: 142 NGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDV 201
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
FSW MI G ++++++ +M R + P V + VLSAC+
Sbjct: 202 FSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACS 247
>sp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protein At1g31430
OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1
Length = 570
Score = 167 bits (423), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 122/186 (65%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++K+V WT++V Y++ G++D AR F++ P +D VLWTAM++GY++ NRF EAL LF
Sbjct: 208 MRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELF 267
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ MQT+ I D F +VS+LT A AL+ G+WI YI++N+V D G AL+DMY C
Sbjct: 268 RCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKC 327
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E A ++D SWT++I GLA++G +ALD++ +M ++ D + +V VL
Sbjct: 328 GCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVL 387
Query: 173 SACTHN 178
+AC H
Sbjct: 388 TACNHG 393
Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 41/207 (19%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-QTSNIM 69
+++ Y + G+++I + FD+MP+RD V W +I Y+ RF +A+ +F+ M Q SN+
Sbjct: 86 SLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIGVFKRMSQESNLK 145
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-- 127
DE TIVS L+A + L+ L++GE I ++ + + + GNAL+DM+C C ++KA+
Sbjct: 146 FDEGTIVSTLSACSALKNLEIGERIYRFV-VTEFEMSVRIGNALVDMFCKCGCLDKARAV 204
Query: 128 ------KDKFSWTTMIVGLAISG------------------------NG-------DKAL 150
K+ WT+M+ G +G NG D+AL
Sbjct: 205 FDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEAL 264
Query: 151 DMFSQMLRASIKPDEVAYVGVLSACTH 177
++F M A I+PD V +L+ C
Sbjct: 265 ELFRCMQTAGIRPDNFVLVSLLTGCAQ 291
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 11/155 (7%)
Query: 31 QMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDL 90
Q P +++ M+ F + L LF E++ + D FT+ +L + LR +
Sbjct: 7 QTP--SLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIE 64
Query: 91 GEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKFSWTTMIVGLAI 142
GE + Y K ++ D + N+L+ MY + E Q+D SW +I
Sbjct: 65 GEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVG 124
Query: 143 SGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSACT 176
+G + A+ +F +M + S +K DE V LSAC+
Sbjct: 125 NGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACS 159
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 162 bits (409), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 119/185 (64%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
++ + ++SWT ++S Y G +D++R+ FD M E+D VLW AMI G ++ R ++AL LF
Sbjct: 318 LEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALF 377
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
QEMQTSN DE T++ L+A + L ALD+G WI YI+K + ++ G +L+DMY C
Sbjct: 378 QEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKC 437
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++ +A ++ ++T +I GLA+ G+ A+ F++M+ A I PDE+ ++G+L
Sbjct: 438 GNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLL 497
Query: 173 SACTH 177
SAC H
Sbjct: 498 SACCH 502
Score = 93.2 bits (230), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 39/205 (19%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A + + + G ++ AR+ FD+ P RD V W +I+GY ++ +A+ +++ M++ +
Sbjct: 196 ASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKP 255
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA---- 126
D+ T++ ++++ + L L+ G+ Y+ +N ++ I NAL+DM+ C D+ +A
Sbjct: 256 DDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIF 315
Query: 127 ----QKDKFSWTTMIVGLAISG-------------------------------NGDKALD 151
++ SWTTMI G A G G AL
Sbjct: 316 DNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALA 375
Query: 152 MFSQMLRASIKPDEVAYVGVLSACT 176
+F +M ++ KPDE+ + LSAC+
Sbjct: 376 LFQEMQTSNTKPDEITMIHCLSACS 400
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 11/148 (7%)
Query: 40 WTAMIDGYLRVNRFREALTLFQEMQTSNIM---GDEFTIVSILTARANLRALDLGEWIKT 96
W I G+ +E+ L+++M D FT + A+LR LG I
Sbjct: 121 WNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILG 180
Query: 97 YIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTMIVGLAISGNGDK 148
++ K +++ NA I M+ C D+E A+K D SW +I G G +K
Sbjct: 181 HVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEK 240
Query: 149 ALDMFSQMLRASIKPDEVAYVGVLSACT 176
A+ ++ M +KPD+V +G++S+C+
Sbjct: 241 AIYVYKLMESEGVKPDDVTMIGLVSSCS 268
>sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2
SV=1
Length = 559
Score = 157 bits (397), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 121/182 (66%), Gaps = 8/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV++W +++ + G +D A+ FD+MP+R+ V W +MI G++R RF++AL +F+EMQ
Sbjct: 191 DVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQ 250
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
++ D FT+VS+L A A L A + G WI YI +N+ + + ALIDMYC C +E
Sbjct: 251 EKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIE 310
Query: 125 K-------AQKDKFS-WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+ A K + S W +MI+GLA +G ++A+D+FS++ R+ ++PD V+++GVL+AC
Sbjct: 311 EGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACA 370
Query: 177 HN 178
H+
Sbjct: 371 HS 372
>sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat-containing protein At1g05750,
chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2
SV=1
Length = 500
Score = 152 bits (384), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 109/185 (58%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++K+ ++W ++ Y+ GQVD A + FD+MPERD + WTAMI+G+++ EAL F
Sbjct: 135 MEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWF 194
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ S + D I++ L A NL AL G W+ Y+ KN++ N+LID+YC C
Sbjct: 195 REMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRC 254
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
VE A ++ SW ++IVG A +GN ++L F +M KPD V + G L
Sbjct: 255 GCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGAL 314
Query: 173 SACTH 177
+AC+H
Sbjct: 315 TACSH 319
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 27/169 (15%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y G V+ ARQ F M +R V W ++I G+ E+L F++MQ
Sbjct: 246 SLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKP 305
Query: 71 DEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
D T LTA +++ ++ G + + ++ I L+D+Y
Sbjct: 306 DAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLY------------ 353
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
+ +G + AL + M +KP+EV +L+AC+++
Sbjct: 354 -----------SRAGRLEDALKLVQSM---PMKPNEVVIGSLLAACSNH 388
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
SWT+ I L +G +A FS M A ++P+ + ++ +LS C
Sbjct: 38 SWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGC 81
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 151 bits (381), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 116/186 (62%), Gaps = 8/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SWT++V+ Y G V+ AR+ FD+MP R+ W+ MI+GY + N F +A+ LF
Sbjct: 178 MGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLF 237
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ M+ ++ +E +VS++++ A+L AL+ GE Y+ K+ + ++ G AL+DM+ C
Sbjct: 238 EFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRC 297
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
D+EKA + D SW+++I GLA+ G+ KA+ FSQM+ P +V + VL
Sbjct: 298 GDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVL 357
Query: 173 SACTHN 178
SAC+H
Sbjct: 358 SACSHG 363
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 76/188 (40%), Gaps = 39/188 (20%)
Query: 29 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88
F Q+ + ++ +I + +A + +M S I D T ++ A + + +
Sbjct: 74 FSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECV 133
Query: 89 DLGEWIKTYIDKNKVKNDIFAGNALIDM-------------------------------Y 117
+GE + I + +ND++ N+L+ M Y
Sbjct: 134 LVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGY 193
Query: 118 CICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
C C VE A ++ F+W+ MI G A + +KA+D+F M R + +E V
Sbjct: 194 CKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMV 253
Query: 170 GVLSACTH 177
V+S+C H
Sbjct: 254 SVISSCAH 261
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 149 bits (377), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 118/190 (62%), Gaps = 15/190 (7%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+KD+ +W ++V+ Y G +D AR+ FD+MPER+ + W+ +I+GY+ +++EAL LF+E
Sbjct: 125 SKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFRE 184
Query: 63 MQTSN-----IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117
MQ + +EFT+ ++L+A L AL+ G+W+ YIDK V+ DI G ALIDMY
Sbjct: 185 MQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMY 244
Query: 118 CICADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVA 167
C +E+A +KD +++ MI LA+ G D+ +FS+M + +I P+ V
Sbjct: 245 AKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVT 304
Query: 168 YVGVLSACTH 177
+VG+L AC H
Sbjct: 305 FVGILGACVH 314
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 61/166 (36%), Gaps = 44/166 (26%)
Query: 54 REALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNAL 113
++++ M+ + D T +L + N L LG+ I + D F +L
Sbjct: 44 HSPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSL 103
Query: 114 IDMYCICADVEKAQ---------------------------------------KDKFSWT 134
++MY C D+ AQ ++ SW+
Sbjct: 104 LNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWS 163
Query: 135 TMIVGLAISGNGDKALDMFSQML-----RASIKPDEVAYVGVLSAC 175
+I G + G +ALD+F +M A ++P+E VLSAC
Sbjct: 164 CLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSAC 209
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 146 bits (368), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 110/185 (59%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DVISW +++S Y GQ+ A+ F M ++ V WTAMI GY + + EA+ F
Sbjct: 170 MYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFF 229
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ + I DE +++S+L + A L +L+LG+WI Y ++ NALI+MY C
Sbjct: 230 REMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKC 289
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ +A KD SW+TMI G A GN A++ F++M RA +KP+ + ++G+L
Sbjct: 290 GVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLL 349
Query: 173 SACTH 177
SAC+H
Sbjct: 350 SACSH 354
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 40/194 (20%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-QTSNIMGDEFTIVSILT 80
+D A + F+Q+ + L+ ++I Y + + + + +++++ + S + D FT +
Sbjct: 58 MDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFK 117
Query: 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK------------ 128
+ A+L + LG+ + ++ K + + NALIDMY D+ A K
Sbjct: 118 SCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVIS 177
Query: 129 -------------------------DK--FSWTTMIVGLAISGNGDKALDMFSQMLRASI 161
DK SWT MI G G +A+D F +M A I
Sbjct: 178 WNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGI 237
Query: 162 KPDEVAYVGVLSAC 175
+PDE++ + VL +C
Sbjct: 238 EPDEISLISVLPSC 251
>sp|Q38959|PP257_ARATH Pentatricopeptide repeat-containing protein At3g26630,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-A6 PE=2
SV=1
Length = 455
Score = 145 bits (365), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 106/184 (57%), Gaps = 9/184 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + ++SWT ++ ++ Q+D A F+QMP R+ V WTAMI Y++ R EA LF
Sbjct: 180 MPGRSIVSWTTMLYGLVSNSQLDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLF 239
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ MQ ++ +EFTIV++L A L +L +G W+ Y KN D F G ALIDMY C
Sbjct: 240 RRMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKC 299
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMF-SQMLRASIKPDEVAYVGV 171
++ A+ K +W +MI L + G G++AL +F AS++PD + +VGV
Sbjct: 300 GSLQDARKVFDVMQGKSLATWNSMITSLGVHGCGEEALSLFEEMEEEASVEPDAITFVGV 359
Query: 172 LSAC 175
LSAC
Sbjct: 360 LSAC 363
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 66/146 (45%), Gaps = 9/146 (6%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN-IMGDEFTIVSI 78
G+ A F+Q+ W MI ++ REAL LF M S+ D+FT +
Sbjct: 66 GETQYASLVFNQLQSPSTFTWNLMIRSLSVNHKPREALLLFILMMISHQSQFDKFTFPFV 125
Query: 79 LTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--DKF----- 131
+ A ++ LG + K ND+F N L+D+Y C + +K DK
Sbjct: 126 IKACLASSSIRLGTQVHGLAIKAGFFNDVFFQNTLMDLYFKCGKPDSGRKVFDKMPGRSI 185
Query: 132 -SWTTMIVGLAISGNGDKALDMFSQM 156
SWTTM+ GL + D A +F+QM
Sbjct: 186 VSWTTMLYGLVSNSQLDSAEIVFNQM 211
>sp|Q1PEU4|PP201_ARATH Pentatricopeptide repeat-containing protein At2g44880
OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2
Length = 555
Score = 145 bits (365), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 111/186 (59%), Gaps = 10/186 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +K VI+WT ++ Y N +D AR+ FD MPER+ V W MI GY + + +E + LF
Sbjct: 202 MTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGIRLF 261
Query: 61 QEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
QEMQ T+++ D+ TI+S+L A ++ AL LGEW ++ + K+ + A++DMY
Sbjct: 262 QEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSK 321
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C ++EKA +K SW MI G A++GN ALD+F M+ KPDE+ + V
Sbjct: 322 CGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEE-KPDEITMLAV 380
Query: 172 LSACTH 177
++AC H
Sbjct: 381 ITACNH 386
Score = 73.6 bits (179), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 33/176 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPE-RDYVLWTAMIDGYLRVNRFREALTL 59
M ++ +SWTA++S YI G++D+A + FDQMP +D V++ AM+DG+++ A L
Sbjct: 139 MPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVKSGDMTSARRL 198
Query: 60 FQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
F EM ++ T +++ N++ DI A L D
Sbjct: 199 FDEMTHKTVI----TWTTMIHGYCNIK-------------------DIDAARKLFDAM-- 233
Query: 120 CADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQM-LRASIKPDEVAYVGVLSA 174
+++ SW TMI G + + + +F +M S+ PD+V + VL A
Sbjct: 234 ------PERNLVSWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPA 283
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 10/145 (6%)
Query: 22 VDIARQCFDQMPER-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG-DEFTIVSIL 79
+ AR+ FDQ P+R D L +MI YL ++ ++ L+++++ D FT ++
Sbjct: 26 IGYARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLT 85
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKF 131
+ + + G + + I + D++ ++DMY + E + +
Sbjct: 86 KSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEV 145
Query: 132 SWTTMIVGLAISGNGDKALDMFSQM 156
SWT +I G G D A +F QM
Sbjct: 146 SWTALISGYIRCGELDLASKLFDQM 170
>sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840
OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2
Length = 545
Score = 144 bits (363), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 111/186 (59%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ ++V SW ++S Y G V A++ FD MP RD V W AM+ Y V + E L +F
Sbjct: 232 MEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVF 291
Query: 61 QEM-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+M S D FT+VS+L+A A+L +L GEW+ YIDK+ ++ + F AL+DMY
Sbjct: 292 NKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATALVDMYSK 351
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C ++KA ++D +W ++I L++ G G AL++FS+M+ KP+ + ++GV
Sbjct: 352 CGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGV 411
Query: 172 LSACTH 177
LSAC H
Sbjct: 412 LSACNH 417
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 71/172 (41%), Gaps = 32/172 (18%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV +V+ Y G +IAR+ D+MP RD V W +++ YL EA LF EM+
Sbjct: 174 DVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDEME 233
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
N+ F I + A L + K D V
Sbjct: 234 ERNVESWNFMI-------SGYAAAGLVKEAKEVFDSMPV--------------------- 265
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI-KPDEVAYVGVLSAC 175
+D SW M+ A G ++ L++F++ML S KPD V VLSAC
Sbjct: 266 ---RDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSAC 314
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 8/143 (5%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81
V A +++ + ++I Y + ALT+F+EM + D+++ +L A
Sbjct: 90 VSYAHSILNRIGSPNGFTHNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKA 149
Query: 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSW 133
A + G I K+ + D+F N L+++Y E A+K D SW
Sbjct: 150 CAAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSW 209
Query: 134 TTMIVGLAISGNGDKALDMFSQM 156
+++ G D+A +F +M
Sbjct: 210 NSLLSAYLEKGLVDEARALFDEM 232
Score = 37.0 bits (84), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G++D A + F +RD W ++I ++AL +F EM
Sbjct: 343 TALVDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFK 402
Query: 70 GDEFTIVSILTARANLRALD 89
+ T + +L+A ++ LD
Sbjct: 403 PNGITFIGVLSACNHVGMLD 422
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 11/113 (9%)
Query: 74 TIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK-------- 125
T V IL+ ++L + ++ K + +D F+ + L+ + +
Sbjct: 38 TPVPILSFTERAKSLTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSIL 97
Query: 126 ---AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ F+ ++I A S + AL +F +ML + PD+ ++ VL AC
Sbjct: 98 NRIGSPNGFTHNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKAC 150
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 144 bits (362), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 113/186 (60%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ KD ++WT ++ Y + AR+ + MP++D V W A+I Y + + EAL +F
Sbjct: 293 MEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVF 352
Query: 61 QEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
E+Q N+ ++ T+VS L+A A + AL+LG WI +YI K+ ++ + +ALI MY
Sbjct: 353 HELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSK 412
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C D+EK+ ++D F W+ MI GLA+ G G++A+DMF +M A++KP+ V + V
Sbjct: 413 CGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNV 472
Query: 172 LSACTH 177
AC+H
Sbjct: 473 FCACSH 478
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 104/182 (57%), Gaps = 12/182 (6%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV +++ Y + G +D A + F + E+D V W +MI+G+++ +AL LF++M+
Sbjct: 165 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 224
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ ++ T+V +L+A A +R L+ G + +YI++N+V ++ NA++DMY C +E
Sbjct: 225 SEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIE 284
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A +KD +WTTM+ G AIS + + A ++ + M + I VA+ ++SA
Sbjct: 285 DAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDI----VAWNALISAYE 340
Query: 177 HN 178
N
Sbjct: 341 QN 342
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 9/165 (5%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-QTSNIMGDEFTIVSI 78
++ AR+ FD++P+ + W +I Y ++ F +M S +++T +
Sbjct: 78 ASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFL 137
Query: 79 LTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDK 130
+ A A + +L LG+ + K+ V +D+F N+LI Y C D++ A +KD
Sbjct: 138 IKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDV 197
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
SW +MI G G+ DKAL++F +M +K V VGVLSAC
Sbjct: 198 VSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSAC 242
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 49/92 (53%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+A++ Y G ++ +R+ F+ + +RD +W+AMI G EA+ +F +MQ +N+
Sbjct: 404 SALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVK 463
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKN 101
+ T ++ A ++ +D E + ++ N
Sbjct: 464 PNGVTFTNVFCACSHTGLVDEAESLFHQMESN 495
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 142 bits (359), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 116/184 (63%), Gaps = 10/184 (5%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMP--ERDYVLWTAMIDGYLRVNRFREALTLFQ 61
KDV W A+++ Y G++D AR + MP R+ V WT +I GY + R EA+ +FQ
Sbjct: 180 KDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQ 239
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
M N+ DE T++++L+A A+L +L+LGE I +Y+D + + NA+IDMY
Sbjct: 240 RMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSG 299
Query: 122 DVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
++ KA +++ +WTT+I GLA G+G +AL MF++M++A ++P++V ++ +LS
Sbjct: 300 NITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILS 359
Query: 174 ACTH 177
AC+H
Sbjct: 360 ACSH 363
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 80/218 (36%), Gaps = 44/218 (20%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRV---NRFREALTL 59
N+D ++ + N G + A F P + L MI + N A+T+
Sbjct: 44 NRDNLNVAKFIEACSNAGHLRYAYSVFTHQPCPNTYLHNTMIRALSLLDEPNAHSIAITV 103
Query: 60 FQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
++++ D FT +L + + G I + + + LI MY
Sbjct: 104 YRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFS 163
Query: 120 CADVEKAQK-----------------------------------------DKFSWTTMIV 138
C + A+K ++ SWT +I
Sbjct: 164 CGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVIS 223
Query: 139 GLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
G A SG +A+++F +ML +++PDEV + VLSAC
Sbjct: 224 GYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACA 261
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N+ V A++ Y G + A F+ + ER+ V WT +I G EAL +F
Sbjct: 282 NRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNR 341
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGE 92
M + + ++ T ++IL+A +++ +DLG+
Sbjct: 342 MVKAGVRPNDVTFIAILSACSHVGWVDLGK 371
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 142 bits (359), Expect = 1e-33, Method: Composition-based stats.
Identities = 71/178 (39%), Positives = 106/178 (59%), Gaps = 10/178 (5%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y G+++ A F+++P +D + W +I GY +N ++EAL LFQEM S
Sbjct: 306 ALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETP 365
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDK--NKVKNDIFAGNALIDMYCICADVEKA-- 126
++ T++SIL A A+L A+D+G WI YIDK V N +LIDMY C D+E A
Sbjct: 366 NDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQ 425
Query: 127 ------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
K SW MI G A+ G D + D+FS+M + I+PD++ +VG+LSAC+H+
Sbjct: 426 VFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHS 483
Score = 134 bits (336), Expect = 4e-31, Method: Composition-based stats.
Identities = 65/183 (35%), Positives = 111/183 (60%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++DV+S+TA++ Y +RG ++ A++ FD++P +D V W AMI GY ++EAL LF++
Sbjct: 197 HRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKD 256
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M +N+ DE T+V++++A A +++LG + +ID + +++ NALID+Y C +
Sbjct: 257 MMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGE 316
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+E A KD SW T+I G +AL +F +MLR+ P++V + +L A
Sbjct: 317 LETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPA 376
Query: 175 CTH 177
C H
Sbjct: 377 CAH 379
Score = 64.7 bits (156), Expect = 3e-10, Method: Composition-based stats.
Identities = 46/193 (23%), Positives = 79/193 (40%), Gaps = 39/193 (20%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A F + E + ++W M G+ + AL L+ M + ++ + +T +L + A
Sbjct: 87 AISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAK 146
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK---------------- 128
+A G+ I ++ K D++ +LI MY +E A K
Sbjct: 147 SKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTAL 206
Query: 129 -----------------------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165
D SW MI G A +GN +AL++F M++ +++PDE
Sbjct: 207 IKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDE 266
Query: 166 VAYVGVLSACTHN 178
V V+SAC +
Sbjct: 267 STMVTVVSACAQS 279
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 116/186 (62%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NK V++W +IV+ Y+ G+VD A + F+ MPE++ V W +I G ++ + F EA+ +F
Sbjct: 398 MSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVF 457
Query: 61 QEMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
MQ+ + D T++SI +A +L ALDL +WI YI+KN ++ D+ G L+DM+
Sbjct: 458 CSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSR 517
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C D E A +D +WT I +A++GN ++A+++F M+ +KPD VA+VG
Sbjct: 518 CGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGA 577
Query: 172 LSACTH 177
L+AC+H
Sbjct: 578 LTACSH 583
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 103/183 (56%), Gaps = 9/183 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
KD+ ++V Y G++D AR+ FD+M ER+ V WT+MI GY R + ++A+ LF M
Sbjct: 167 KDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRM 226
Query: 64 -QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY--CIC 120
+ + + T+V +++A A L L+ GE + +I + ++ + +AL+DMY C
Sbjct: 227 VRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNA 286
Query: 121 ADVEKAQKDKFSWTTMIVGLAISGN------GDKALDMFSQMLRASIKPDEVAYVGVLSA 174
DV K D++ + + + A++ N +AL +F+ M+ + ++PD ++ + +S+
Sbjct: 287 IDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISS 346
Query: 175 CTH 177
C+
Sbjct: 347 CSQ 349
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 88/186 (47%), Gaps = 13/186 (6%)
Query: 3 NKDVISWTAIVSRYINRG---QVDIARQCFDQMPERDYV-LWTAMIDGYLRVNRFREALT 58
+ DV + T +V+R G + A++ F+ ++ ++I GY EA+
Sbjct: 61 DNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAIL 120
Query: 59 LFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC 118
LF M S I D++T L+A A RA G I I K D+F N+L+ Y
Sbjct: 121 LFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYA 180
Query: 119 ICADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYV 169
C +++ A+K + SWT+MI G A A+D+F +M+R + P+ V V
Sbjct: 181 ECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMV 240
Query: 170 GVLSAC 175
V+SAC
Sbjct: 241 CVISAC 246
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 8/160 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+A+V Y+ +D+A++ FD+ + L AM Y+R REAL +F M S +
Sbjct: 275 SALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVR 334
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
D +++S +++ + LR + G+ Y+ +N ++ NALIDMY C + A
Sbjct: 335 PDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRI 394
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI 161
K +W +++ G +G D A + F M +I
Sbjct: 395 FDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNI 434
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 113/185 (61%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ D +SW +++ Y+ G++DIA F +M E++ + WT MI GY++ + +EAL LF
Sbjct: 176 IPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLF 235
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EMQ S++ D ++ + L+A A L AL+ G+WI +Y++K +++ D G LIDMY C
Sbjct: 236 HEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKC 295
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
++E+A +K +WT +I G A G+G +A+ F +M + IKP+ + + VL
Sbjct: 296 GEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVL 355
Query: 173 SACTH 177
+AC++
Sbjct: 356 TACSY 360
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 80/190 (42%), Gaps = 39/190 (20%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
A+ FD D LW MI G+ + +L L+Q M S+ + +T S+L A +N
Sbjct: 68 AQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSN 127
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------------------- 123
L A + I I K +ND++A N+LI+ Y + +
Sbjct: 128 LSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSV 187
Query: 124 ------------------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165
+ A+K+ SWTTMI G + +AL +F +M + ++PD
Sbjct: 188 IKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDN 247
Query: 166 VAYVGVLSAC 175
V+ LSAC
Sbjct: 248 VSLANALSAC 257
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 27/172 (15%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + ++ Y G+++ A + F + ++ WTA+I GY REA++ F EMQ
Sbjct: 281 DSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQ 340
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN-KVKNDIFAGNALIDMYCICADV 123
I + T ++LTA + ++ G+ I ++++ +K I ++D+
Sbjct: 341 KMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDL------- 393
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
L +G D+A +M +KP+ V + +L AC
Sbjct: 394 ----------------LGRAGLLDEAKRFIQEM---PLKPNAVIWGALLKAC 426
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 139 bits (350), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 107/180 (59%), Gaps = 8/180 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D + TA+V+ G V AR+ F+ MPERD + W AMI GY +V REAL +F MQ
Sbjct: 173 DFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQ 232
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ + ++S+L+A L ALD G W +YI++NK+K + L+D+Y C D+E
Sbjct: 233 LEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDME 292
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
KA +K+ ++W++ + GLA++G G+K L++FS M + + P+ V +V VL C+
Sbjct: 293 KAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCS 352
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFQEMQTSNI 68
T +V Y G ++ A + F M E++ W++ ++G L +N F E L LF M+ +
Sbjct: 279 TTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNG-LAMNGFGEKCLELFSLMKQDGV 337
Query: 69 MGDEFTIVSILTARANLRALDLGE-WIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126
+ T VS+L + + +D G+ + ++ ++ + L+D+Y +E A
Sbjct: 338 TPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDA 396
>sp|Q56X05|PPR15_ARATH Pentatricopeptide repeat-containing protein At1g06145
OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2
Length = 577
Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+ + +++ Y+ G ++ A F+QMP +D + WT MI GY + R+REA+ +F
Sbjct: 216 MSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVF 275
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M I+ DE T+ ++++A A+L L++G+ + Y +N D++ G+AL+DMY C
Sbjct: 276 YKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKC 335
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E+A +K+ F W ++I GLA G +AL MF++M S+KP+ V +V V
Sbjct: 336 GSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVF 395
Query: 173 SACTH 177
+ACTH
Sbjct: 396 TACTH 400
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 25/171 (14%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV +A+V Y G ++ A F +P+++ W ++I+G +EAL +F +M+
Sbjct: 321 DVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKME 380
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
++ + T VS+ TA + +D G I ++ID Y I ++VE
Sbjct: 381 MESVKPNAVTFVSVFTACTHAGLVDEGRRIY---------------RSMIDDYSIVSNVE 425
Query: 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ + +G +AL++ M +P+ V + +L C
Sbjct: 426 H-------YGGMVHLFSKAGLIYEALELIGNM---EFEPNAVIWGALLDGC 466
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 64/144 (44%), Gaps = 10/144 (6%)
Query: 21 QVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80
++D+A QM E + ++ A+ G++ + +L L+ M ++ +T S++
Sbjct: 75 RLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLV- 133
Query: 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFS 132
+A+ A GE ++ +I K + LID Y + +A+K D +
Sbjct: 134 -KASSFASRFGESLQAHIWKFGFGFHVKIQTTLIDFYSATGRIREARKVFDEMPERDDIA 192
Query: 133 WTTMIVGLAISGNGDKALDMFSQM 156
WTTM+ + D A + +QM
Sbjct: 193 WTTMVSAYRRVLDMDSANSLANQM 216
>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3
SV=1
Length = 544
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 113/185 (61%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++D ++ T +++ Y G + A + F + +D V WTAMIDG +R +AL LF
Sbjct: 184 MPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELF 243
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EMQ N+ +EFT V +L+A ++L AL+LG W+ ++++ +++ F GNALI+MY C
Sbjct: 244 REMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRC 303
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
D+ +A+ KD S+ TMI GLA+ G +A++ F M+ +P++V V +L
Sbjct: 304 GDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALL 363
Query: 173 SACTH 177
+AC+H
Sbjct: 364 NACSH 368
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 86/191 (45%), Gaps = 35/191 (18%)
Query: 21 QVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80
VD A F + + L+TAMIDG++ R + ++L+ M ++++ D + I S+L
Sbjct: 76 SVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLK 135
Query: 81 A-------RANLRALDLG---------EWIKTYIDKNKVKN-----------DIFAGNAL 113
A + + L LG + ++ Y ++ N D A +
Sbjct: 136 ACDLKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVM 195
Query: 114 IDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165
I+ Y C +++A KD WT MI GL + +KAL++F +M ++ +E
Sbjct: 196 INCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANE 255
Query: 166 VAYVGVLSACT 176
V VLSAC+
Sbjct: 256 FTAVCVLSACS 266
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 11/169 (6%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+++ Y G ++ AR+ F M ++D + + MI G EA+ F++M
Sbjct: 295 ALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRP 354
Query: 71 DEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
++ T+V++L A ++ LD+G E + V+ I ++D+ +E+A
Sbjct: 355 NQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRF 414
Query: 127 ------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
+ D T++ I GN + + ++ L S PD YV
Sbjct: 415 IENIPIEPDHIMLGTLLSACKIHGNMELG-EKIAKRLFESENPDSGTYV 462
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 137 bits (345), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 110/185 (59%), Gaps = 8/185 (4%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
++ +++ W ++ Y+ G AR FD+M +R V W MI GY F++A+ +F+
Sbjct: 204 RDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFR 263
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
EM+ +I + T+VS+L A + L +L+LGEW+ Y + + ++ D G+ALIDMY C
Sbjct: 264 EMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCG 323
Query: 122 DVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+EKA +++ +W+ MI G AI G A+D F +M +A ++P +VAY+ +L+
Sbjct: 324 IIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLT 383
Query: 174 ACTHN 178
AC+H
Sbjct: 384 ACSHG 388
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 85/216 (39%), Gaps = 56/216 (25%)
Query: 17 INRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFRE--ALTLFQEMQTSN-IMGDEF 73
++ +D A + F+QMP+R+ W +I G+ + + A+TLF EM + + + F
Sbjct: 70 LHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRF 129
Query: 74 TIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA------- 126
T S+L A A + G+ I K D F + L+ MY +C ++ A
Sbjct: 130 TFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKN 189
Query: 127 ----------------------------------------------QKDKFSWTTMIVGL 140
Q+ SW TMI G
Sbjct: 190 IIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGY 249
Query: 141 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+++G A+++F +M + I+P+ V V VL A +
Sbjct: 250 SLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAIS 285
>sp|Q9SR01|PP212_ARATH Pentatricopeptide repeat-containing protein At3g04750,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E81 PE=2
SV=1
Length = 661
Score = 135 bits (339), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 106/188 (56%), Gaps = 10/188 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVN-RFREALTL 59
MK KD+ SW +V ++ G ++ A+ FDQMP+RD V W +++ GY + R L
Sbjct: 295 MKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKGCDQRTVREL 354
Query: 60 FQEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC 118
F EM + D T+VS+++ AN L G W+ + + ++K D F +ALIDMYC
Sbjct: 355 FYEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLVIRLQLKGDAFLSSALIDMYC 414
Query: 119 ICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C +E+A +KD WT+MI GLA GNG +AL +F +M + P+ V +
Sbjct: 415 KCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQALQLFGRMQEEGVTPNNVTLLA 474
Query: 171 VLSACTHN 178
VL+AC+H+
Sbjct: 475 VLTACSHS 482
Score = 82.8 bits (203), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 10/160 (6%)
Query: 9 WTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI 68
W ++V Y+ G +A + F +MP D + MI GY + EAL L+ +M + I
Sbjct: 169 WNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGI 228
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNK--VKNDIFAGNALIDMYCICADVEKA 126
DE+T++S+L +L + LG+ + +I++ +++ NAL+DMY C + A
Sbjct: 229 EPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESGLA 288
Query: 127 --------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158
+KD SW TM+VG G+ + A +F QM +
Sbjct: 289 KRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPK 328
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 111 NALIDMYCICADVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIK 162
N+L+ Y + A+K D S+ MIVG A G +AL ++ +M+ I+
Sbjct: 170 NSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGIE 229
Query: 163 PDEVAYVGVLSACTH 177
PDE + +L C H
Sbjct: 230 PDEYTVLSLLVCCGH 244
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 107/183 (58%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ D + W++++ Y G +D AR FD++ E+D V WT+MID Y + +R+RE +LF E
Sbjct: 250 DSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSE 309
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ S +E+T +L A A+L +LG+ + Y+ + FA ++L+DMY C +
Sbjct: 310 LVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGN 369
Query: 123 VEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+E A+ D SWT++I G A +G D+AL F +L++ KPD V +V VLSA
Sbjct: 370 IESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSA 429
Query: 175 CTH 177
CTH
Sbjct: 430 CTH 432
Score = 100 bits (249), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 103/184 (55%), Gaps = 9/184 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M N+D+ SW +V+ Y G ++ AR+ FD+M E+D WTAM+ GY++ ++ EAL L+
Sbjct: 146 MPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLY 205
Query: 61 QEMQ-TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
MQ N + FT+ + A A ++ + G+ I +I + + +D ++L+DMY
Sbjct: 206 SLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGK 265
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C +++A +KD SWT+MI S + +FS+++ + +P+E + GV
Sbjct: 266 CGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGV 325
Query: 172 LSAC 175
L+AC
Sbjct: 326 LNAC 329
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 80/171 (46%), Gaps = 13/171 (7%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+++V Y G ++ A+ D P+ D V WT++I G + + EAL F + S
Sbjct: 358 SSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTK 417
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK--- 125
D T V++L+A + ++ G E+ + +K+++ + L+D+ E+
Sbjct: 418 PDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKS 477
Query: 126 ------AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPD-EVAYV 169
+ KF W +++ G + GN D A + ++ + I+P+ V YV
Sbjct: 478 VISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFK--IEPENPVTYV 526
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 17/131 (12%)
Query: 43 MIDGYLRVNRFREALTLF--QEM--QTSNIMG-----DEFTIVSILTARANLRALDLGEW 93
+++ R NRF EA+ + Q++ + ++G T +++ + RAL+ G+
Sbjct: 47 VVERLCRANRFGEAIDVLCGQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKK 106
Query: 94 IKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------DKFSWTTMIVGLAISGN 145
+ +I + I N L+ MY C + A+K D SW M+ G A G
Sbjct: 107 VHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGL 166
Query: 146 GDKALDMFSQM 156
++A +F +M
Sbjct: 167 LEEARKLFDEM 177
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 132 bits (333), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 110/181 (60%), Gaps = 8/181 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N DV + T+++S Y G+++ A + FD++P+R V WTA+ GY R REA+ LF++
Sbjct: 143 NHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKK 202
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M + D + IV +L+A ++ LD GEWI Y+++ +++ + F L+++Y C
Sbjct: 203 MVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGK 262
Query: 123 VEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+EKA +KD +W+TMI G A + + +++F QML+ ++KPD+ + VG LS+
Sbjct: 263 MEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSS 322
Query: 175 C 175
C
Sbjct: 323 C 323
Score = 119 bits (299), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 97/176 (55%), Gaps = 8/176 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T +V+ Y G+++ AR FD M E+D V W+ MI GY + +E + LF +M N+
Sbjct: 251 TTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLK 310
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV------ 123
D+F+IV L++ A+L ALDLGEW + ID+++ ++F NALIDMY C +
Sbjct: 311 PDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEV 370
Query: 124 --EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
E +KD I GLA +G+ + +F Q + I PD ++G+L C H
Sbjct: 371 FKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVH 426
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ D ++ R + Q + F + L+ ++I+G++ + F E L LF
Sbjct: 42 HHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLS 101
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
++ + FT +L A + LG + + + K +D+ A +L+ +Y
Sbjct: 102 IRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGR 161
Query: 123 VEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+ A K +WT + G SG +A+D+F +M+ +KPD V VLSA
Sbjct: 162 LNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSA 221
Query: 175 CTH 177
C H
Sbjct: 222 CVH 224
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 131 bits (330), Expect = 2e-30, Method: Composition-based stats.
Identities = 67/176 (38%), Positives = 108/176 (61%), Gaps = 9/176 (5%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
+++ Y N G V A + FD+MPE+D V W ++I+G+ + EAL L+ EM + I
Sbjct: 161 SLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKP 220
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--- 127
D FTIVS+L+A A + AL LG+ + Y+ K + ++ + N L+D+Y C VE+A+
Sbjct: 221 DGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLF 280
Query: 128 -----KDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSACTH 177
K+ SWT++IVGLA++G G +A+++F M + P E+ +VG+L AC+H
Sbjct: 281 DEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSH 336
Score = 77.0 bits (188), Expect = 6e-14, Method: Composition-based stats.
Identities = 43/146 (29%), Positives = 77/146 (52%), Gaps = 9/146 (6%)
Query: 39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMG-DEFTIVSILTARANLRALDLGEWIKTY 97
+W +I GY + A +L++EM+ S ++ D T ++ A + + LGE I +
Sbjct: 87 IWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSV 146
Query: 98 IDKNKVKNDIFAGNALIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKA 149
+ ++ + I+ N+L+ +Y C DV A +KD +W ++I G A +G ++A
Sbjct: 147 VIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEA 206
Query: 150 LDMFSQMLRASIKPDEVAYVGVLSAC 175
L ++++M IKPD V +LSAC
Sbjct: 207 LALYTEMNSKGIKPDGFTIVSLLSAC 232
Score = 53.9 bits (128), Expect = 6e-07, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 89/173 (51%), Gaps = 15/173 (8%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRF-REALTLFQE 62
+++ S ++ Y G+V+ A+ FD+M +++ V WT++I G L VN F +EA+ LF+
Sbjct: 255 RNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVG-LAVNGFGKEAIELFKY 313
Query: 63 MQ-TSNIMGDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M+ T ++ E T V IL A ++ + G E+ + ++ K++ I ++D+
Sbjct: 314 MESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARA 373
Query: 121 ADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 164
V+KA Q + W T++ + G+ D L F+++ ++P+
Sbjct: 374 GQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSD--LAEFARIQILQLEPN 424
>sp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protein At5g08510
OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1
Length = 511
Score = 130 bits (328), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 106/187 (56%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV W A+++ Y RG + A + FD MP ++ WT +I G+ + + EAL +F
Sbjct: 143 MSKRDVPVWNAMITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMF 202
Query: 61 QEMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
M+ ++ + T+VS+L A ANL L++G ++ Y +N ++I+ NA I+MY
Sbjct: 203 LCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSK 262
Query: 120 CADVEKA---------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C ++ A Q++ SW +MI LA G D+AL +F+QMLR KPD V +VG
Sbjct: 263 CGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVG 322
Query: 171 VLSACTH 177
+L AC H
Sbjct: 323 LLLACVH 329
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 69/168 (41%), Gaps = 28/168 (16%)
Query: 11 AIVSRYINRGQVDIARQCFDQMP-ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
A + Y G +D+A++ F+++ +R+ W +MI + EALTLF +M
Sbjct: 255 ATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEK 314
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128
D T V +L A + + G E K+ + +K+ + +ID+
Sbjct: 315 PDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCMIDL------------ 362
Query: 129 DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
L G +A D+ M +KPD V + +L AC+
Sbjct: 363 -----------LGRVGKLQEAYDLIKTM---PMKPDAVVWGTLLGACS 396
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 129 bits (325), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 99/176 (56%), Gaps = 8/176 (4%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+ + Y +++ AR+ FD+ PE+ W AMI GY + +A++LF+EMQ S
Sbjct: 358 TALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFS 417
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
+ TI IL+A A L AL LG+W+ + ++ I+ ALI MY C + +A
Sbjct: 418 PNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRL 477
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+K++ +W TMI G + G G +AL++F +ML + I P V ++ VL AC+H
Sbjct: 478 FDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSH 533
Score = 73.2 bits (178), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 87/184 (47%), Gaps = 9/184 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ +++ + IV Y +V+ AR+ FD+MPE+D +LW MI GY + + E++ +F++
Sbjct: 151 DSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRD 210
Query: 63 M-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121
+ S D T++ IL A A L+ L LG I + K + + I +Y C
Sbjct: 211 LINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCG 270
Query: 122 DV--------EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+ E + D ++ MI G +G + +L +F +++ + + V ++
Sbjct: 271 KIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVP 330
Query: 174 ACTH 177
H
Sbjct: 331 VSGH 334
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 11/174 (6%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T +S Y G++ + F + + D V + AMI GY +L+LF+E+ S
Sbjct: 260 TGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAR 319
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--- 126
T+VS++ +L L I Y K+ + AL +Y ++E A
Sbjct: 320 LRSSTLVSLVPVSGHLM---LIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKL 376
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+K SW MI G +G + A+ +F +M ++ P+ V +LSAC
Sbjct: 377 FDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSAC 430
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 25/166 (15%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ Y G + AR+ FD M +++ V W MI GY + +EAL +F EM S I
Sbjct: 459 TALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGIT 518
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
T + +L A ++ + G ++IF N++I Y V+
Sbjct: 519 PTPVTFLCVLYACSHAGLVKEG-------------DEIF--NSMIHRYGFEPSVKH---- 559
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ M+ L +G+ +AL M SI+P + +L AC
Sbjct: 560 ---YACMVDILGRAGHLQRALQFIEAM---SIEPGSSVWETLLGAC 599
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 129 bits (325), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 101/185 (54%), Gaps = 8/185 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V +W +++ Y G++ A+ FD+MP+RD V W AMI GY + EAL LF
Sbjct: 338 MPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLF 397
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M+ + + S L+ A++ AL+LG+ + + K + F GNAL+ MYC C
Sbjct: 398 VQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKC 457
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+E+A KD SW TMI G + G G+ AL F M R +KPD+ V VL
Sbjct: 458 GSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVL 517
Query: 173 SACTH 177
SAC+H
Sbjct: 518 SACSH 522
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 88/184 (47%), Gaps = 16/184 (8%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW I++ Y G++D ARQ FD+ P +D WTAM+ GY++ EA LF
Sbjct: 245 MNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELF 304
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+M N E + ++L +++ K D +N + N +I Y C
Sbjct: 305 DKMPERN----EVSWNAMLAGYVQGERMEMA---KELFDVMPCRN-VSTWNTMITGYAQC 356
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+ +A ++D SW MI G + SG+ +AL +F QM R + + ++ L
Sbjct: 357 GKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSAL 416
Query: 173 SACT 176
S C
Sbjct: 417 STCA 420
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 81/164 (49%), Gaps = 16/164 (9%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV SW ++S Y G VD AR FD+MPE++ V W A++ Y++ ++ EA LF
Sbjct: 152 MPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLF 211
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+ + ++ + + + + A + + D V+ D+ + N +I Y
Sbjct: 212 KSRENWALVSWNCLLGGFVKKKKIVEA-------RQFFDSMNVR-DVVSWNTIITGYAQS 263
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQM 156
+++A+ +D F+WT M+ G + ++A ++F +M
Sbjct: 264 GKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKM 307
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 47/188 (25%)
Query: 7 ISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTS 66
+S+ ++S Y+ G+ ++AR+ FD+MPERD V W MI GY+R +A LF+ M
Sbjct: 96 VSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPER 155
Query: 67 NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY--------- 117
++ + ++L+ A +D ++ D+ KND+ + NAL+ Y
Sbjct: 156 DVC----SWNTMLSGYAQNGCVDDA---RSVFDRMPEKNDV-SWNALLSAYVQNSKMEEA 207
Query: 118 ----------------CICADVEKAQK--------------DKFSWTTMIVGLAISGNGD 147
C+ K +K D SW T+I G A SG D
Sbjct: 208 CMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKID 267
Query: 148 KALDMFSQ 155
+A +F +
Sbjct: 268 EARQLFDE 275
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 35/176 (19%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ D+ W +S Y+ G+ + A + F +MP V + MI GYLR F A LF E
Sbjct: 61 DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDE 120
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M +++ I + R +A +L E +
Sbjct: 121 MPERDLVSWNVMIKGYVRNRNLGKARELFEIM---------------------------- 152
Query: 123 VEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
++D SW TM+ G A +G D A +F +M + ++V++ +LSA N
Sbjct: 153 ---PERDVCSWNTMLSGYAQNGCVDDARSVFDRM----PEKNDVSWNALLSAYVQN 201
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
A++ Y G ++ A F +M +D V W MI GY R AL F+ M+ +
Sbjct: 448 NALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLK 507
Query: 70 GDEFTIVSILTARANLRALDLG 91
D+ T+V++L+A ++ +D G
Sbjct: 508 PDDATMVAVLSACSHTGLVDKG 529
>sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680
OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1
Length = 727
Score = 129 bits (324), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 110/182 (60%), Gaps = 8/182 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+ + + TA+V Y G + AR+ FD + ERD LWT++I GY++ + EAL L++ M
Sbjct: 355 RHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRM 414
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+T+ I+ ++ T+ S+L A ++L L+LG+ + + K+ ++ G+AL MY C +
Sbjct: 415 KTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSL 474
Query: 124 E--------KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
E KD SW MI GL+ +G GD+AL++F +ML ++PD+V +V ++SAC
Sbjct: 475 EDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISAC 534
Query: 176 TH 177
+H
Sbjct: 535 SH 536
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 88/182 (48%), Gaps = 10/182 (5%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ T++V Y G V+ + F MPER+ W+ M+ GY R EA+ +F
Sbjct: 152 DIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFL 211
Query: 65 TSNIMG--DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
G ++ ++L++ A + LG I KN + + NAL+ MY C
Sbjct: 212 REKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCES 271
Query: 123 VEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+ +A K + +W+ M+ G + +G +A+ +FS+M A IKP E VGVL+A
Sbjct: 272 LNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNA 331
Query: 175 CT 176
C+
Sbjct: 332 CS 333
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 96/175 (54%), Gaps = 10/175 (5%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A+V+ Y ++ A + FD +R+ + W+AM+ GY + EA+ LF M ++ I
Sbjct: 261 ALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKP 320
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY----CICADVEKA 126
E+TIV +L A +++ L+ G+ + +++ K + +FA AL+DMY C+ AD K
Sbjct: 321 SEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCL-ADARKG 379
Query: 127 -----QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
++D WT++I G + + ++AL ++ +M A I P++ VL AC+
Sbjct: 380 FDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACS 434
Score = 73.6 bits (179), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 88/176 (50%), Gaps = 13/176 (7%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALT---LFQEMQTSNI 68
+V+ Y G++ A F+ + +D V W ++I GY + + T LF+EM+ +I
Sbjct: 55 LVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDI 114
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA-- 126
+ + +T+ I A ++L++ +G + K DI+ +L+ MYC VE
Sbjct: 115 LPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLK 174
Query: 127 ------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV--GVLSA 174
+++ ++W+TM+ G A G ++A+ +F+ LR + + YV VLS+
Sbjct: 175 VFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSS 230
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQM 32
NKDV+SW A++S + GQ D A + F++M
Sbjct: 486 NKDVVSWNAMISGLSHNGQGDEALELFEEM 515
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 106/186 (56%), Gaps = 14/186 (7%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV ++ Y + G +D+AR+ FD+MPER V W +MID +R + AL LF+EMQ
Sbjct: 185 DVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQ 244
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN---KVKNDIFAGNALIDMYCICA 121
S D +T+ S+L+A A L +L LG W ++ + V D+ N+LI+MYC C
Sbjct: 245 RS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG 303
Query: 122 DVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQML--RASIKPDEVAYVGV 171
+ A+ +D SW MI+G A G ++A++ F +M+ R +++P+ V +VG+
Sbjct: 304 SLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGL 363
Query: 172 LSACTH 177
L AC H
Sbjct: 364 LIACNH 369
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 111/183 (60%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ DV +++V Y +++ + + F ++ RD + W +++ GY++ R+ EAL LF++
Sbjct: 274 DSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQ 333
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
M T+ + S++ A A+L L LG+ + Y+ + ++IF +AL+DMY C +
Sbjct: 334 MVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGN 393
Query: 123 VEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
++ A+K D+ SWT +I+G A+ G+G +A+ +F +M R +KP++VA+V VL+A
Sbjct: 394 IKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTA 453
Query: 175 CTH 177
C+H
Sbjct: 454 CSH 456
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 93/164 (56%), Gaps = 8/164 (4%)
Query: 22 VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81
+D R+ F+ MP +D V + +I GY + + +AL + +EM T+++ D FT+ S+L
Sbjct: 192 IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPI 251
Query: 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSW 133
+ + G+ I Y+ + + +D++ G++L+DMY A +E ++ +D SW
Sbjct: 252 FSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISW 311
Query: 134 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177
+++ G +G ++AL +F QM+ A +KP VA+ V+ AC H
Sbjct: 312 NSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAH 355
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 25/167 (14%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
+A+V Y G + AR+ FD+M D V WTA+I G+ EA++LF+EM+ +
Sbjct: 382 SALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVK 441
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKD 129
++ V++LTA +++ +D W Y + ++ N ++ Y AD+
Sbjct: 442 PNQVAFVAVLTACSHVGLVDEA-W--GYFNS---MTKVYGLNQELEHYAAVADL------ 489
Query: 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
L +G ++A + S+M ++P + +LS+C+
Sbjct: 490 ----------LGRAGKLEEAYNFISKMC---VEPTGSVWSTLLSSCS 523
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 80/209 (38%), Gaps = 44/209 (21%)
Query: 8 SWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN 67
S + ++S Y N + A F + + W ++I + + F +AL F EM+ S
Sbjct: 41 SASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASG 100
Query: 68 IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY---------- 117
D S+L + + L GE + +I + + D++ GNAL++MY
Sbjct: 101 RCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKI 160
Query: 118 -------------------------CICA----DVEK-----AQKDKFSWTTMIVGLAIS 143
CI V + +KD S+ T+I G A S
Sbjct: 161 SVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQS 220
Query: 144 GNGDKALDMFSQMLRASIKPDEVAYVGVL 172
G + AL M +M +KPD VL
Sbjct: 221 GMYEDALRMVREMGTTDLKPDSFTLSSVL 249
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 106/182 (58%), Gaps = 8/182 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV +++V Y D A++ FD+MP R+ V WTA+I GY++ F + + +F+EM
Sbjct: 239 DVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEML 298
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
S++ +E T+ S+L+A A++ AL G + Y+ KN ++ + AG LID+Y C +E
Sbjct: 299 KSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLE 358
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+A +K+ ++WT MI G A G A D+F ML + + P+EV ++ VLSAC
Sbjct: 359 EAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACA 418
Query: 177 HN 178
H
Sbjct: 419 HG 420
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 101/184 (54%), Gaps = 9/184 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
+ D +++S Y + G D A + FD ++D V WTAMIDG++R EA+ F E
Sbjct: 135 DSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVE 194
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIK-TYIDKNKVKNDIFAGNALIDMYCICA 121
M+ + + +E T+VS+L A + + G + Y++ +VK D+F G++L+DMY C+
Sbjct: 195 MKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCS 254
Query: 122 DVEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
+ AQK + +WT +I G S DK + +F +ML++ + P+E VLS
Sbjct: 255 CYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLS 314
Query: 174 ACTH 177
AC H
Sbjct: 315 ACAH 318
>sp|Q9MAT2|PPR10_ARATH Pentatricopeptide repeat-containing protein At1g04840
OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1
Length = 665
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 106/183 (57%), Gaps = 8/183 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ SW+ ++ Y++ G+++ A+Q F+ MPE++ V WT +I+G+ + + A++ +
Sbjct: 222 MPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTY 281
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM + +E+TI ++L+A + AL G I YI N +K D G AL+DMY C
Sbjct: 282 FEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKC 341
Query: 121 ADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+++ A KD SWT MI G A+ G +A+ F QM+ + KPDEV ++ VL
Sbjct: 342 GELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVL 401
Query: 173 SAC 175
+AC
Sbjct: 402 TAC 404
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 41/173 (23%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPER----DYVLWTAMIDGYLRVNRFREALTLFQEMQTS 66
++V Y GQ+ A Q F++ P+R ++W +I+GY R A TLF+ M
Sbjct: 166 SLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYCRAKDMHMATTLFRSMPER 225
Query: 67 NIMGDEFTIVSILTARANLRALDLGEW---IKTYIDKNKVKNDIFAGNALIDMYCICADV 123
N G W IK Y+D ++ L ++
Sbjct: 226 NS----------------------GSWSTLIKGYVDSGELNR----AKQLFELM------ 253
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+K+ SWTT+I G + +G+ + A+ + +ML +KP+E VLSAC+
Sbjct: 254 --PEKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACS 304
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA+V Y G++D A F M +D + WTAMI G+ RF +A+ F++M S
Sbjct: 332 TALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEK 391
Query: 70 GDEFTIVSILTARANLRALDLG 91
DE +++LTA N +DLG
Sbjct: 392 PDEVVFLAVLTACLNSSEVDLG 413
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 128 bits (321), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 107/191 (56%), Gaps = 14/191 (7%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++VI+ T+++S Y AR F +M ER+ V W A+I GY + EAL+LF
Sbjct: 315 MPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLF 374
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVK------NDIFAGNALI 114
++ ++ ++ +IL A A+L L LG ++ K+ K +DIF GN+LI
Sbjct: 375 CLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLI 434
Query: 115 DMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 166
DMY C VE+ ++D SW MI+G A +G G++AL++F +ML + KPD +
Sbjct: 435 DMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHI 494
Query: 167 AYVGVLSACTH 177
+GVLSAC H
Sbjct: 495 TMIGVLSACGH 505
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 100/184 (54%), Gaps = 8/184 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ +W ++V+ G +D A F MPERD W +M+ G+ + +R EAL F
Sbjct: 81 MPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYF 140
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
M + +E++ S+L+A + L ++ G + + I K+ +D++ G+AL+DMY C
Sbjct: 141 AMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKC 200
Query: 121 ADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172
+V AQ ++ SW ++I +G +ALD+F ML + ++PDEV V+
Sbjct: 201 GNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVI 260
Query: 173 SACT 176
SAC
Sbjct: 261 SACA 264
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 102/212 (48%), Gaps = 40/212 (18%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV +A+V Y G V+ A++ FD+M +R+ V W ++I + + EAL +FQ M
Sbjct: 186 DVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMML 245
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN-KVKNDIFAGNALIDMYCICADV 123
S + DE T+ S+++A A+L A+ +G+ + + KN K++NDI NA +DMY C+ +
Sbjct: 246 ESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRI 305
Query: 124 EK---------------------------------------AQKDKFSWTTMIVGLAISG 144
++ A+++ SW +I G +G
Sbjct: 306 KEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNG 365
Query: 145 NGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
++AL +F + R S+ P ++ +L AC
Sbjct: 366 ENEEALSLFCLLKRESVCPTHYSFANILKACA 397
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 39/123 (31%)
Query: 93 WIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA-------------------------- 126
++ + K+ N+IF N LID Y C +E
Sbjct: 41 YVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLG 100
Query: 127 -------------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173
++D+ +W +M+ G A ++AL F+ M + +E ++ VLS
Sbjct: 101 FLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLS 160
Query: 174 ACT 176
AC+
Sbjct: 161 ACS 163
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 127 bits (319), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 105/181 (58%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
+V +++ Y VD AR FD++ E V + AMI GY R NR EAL+LF+EMQ
Sbjct: 163 NVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQ 222
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ +E T++S+L++ A L +LDLG+WI Y K+ + ALIDM+ C ++
Sbjct: 223 GKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLD 282
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A KD +W+ MIV A G +K++ MF +M +++PDE+ ++G+L+AC+
Sbjct: 283 DAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACS 342
Query: 177 H 177
H
Sbjct: 343 H 343
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 4 KDVISWTAIVSRYIN-------RGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREA 56
K I + V++ IN + AR F+ M E D V++ +M GY R E
Sbjct: 54 KSHIEDVSFVAKLINFCTESPTESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEV 113
Query: 57 LTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116
+LF E+ I+ D +T S+L A A +AL+ G + K + ++++ LI+M
Sbjct: 114 FSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINM 173
Query: 117 YCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168
Y C DV+ A + + MI G A ++AL +F +M +KP+E+
Sbjct: 174 YTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITL 233
Query: 169 VGVLSAC 175
+ VLS+C
Sbjct: 234 LSVLSSC 240
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
TA++ + G +D A F++M +D W+AMI Y + +++ +F+ M++ N+
Sbjct: 269 TALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQ 328
Query: 70 GDEFTIVSILTARANLRALDLG-EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126
DE T + +L A ++ ++ G ++ + K + I +++D+ ++E A
Sbjct: 329 PDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDA 386
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 127 bits (318), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 113/187 (60%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ TA+VS Y G++D A+ FDQ ++D V WT MI Y+ + +EAL +F
Sbjct: 273 MSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVF 332
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
+EM S I D ++ S+++A ANL LD +W+ + I N +++++ NALI+MY C
Sbjct: 333 EEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKC 392
Query: 121 ADVEKAQKDKF---------SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
++ A +D F SW++MI L++ G AL +F++M + +++P+EV +VGV
Sbjct: 393 GGLD-ATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGV 451
Query: 172 LSACTHN 178
L C+H+
Sbjct: 452 LYGCSHS 458
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 91/211 (43%), Gaps = 39/211 (18%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D T + Y + G+++ AR FD+M RD V W MI+ Y R EA LF+EM+
Sbjct: 145 DPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMK 204
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKND------------------ 106
SN+M DE + +I++A + I ++ +N V+ D
Sbjct: 205 DSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMD 264
Query: 107 -------------IFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGN 145
+F A++ Y C ++ AQ KD WTTMI S
Sbjct: 265 MAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDY 324
Query: 146 GDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+AL +F +M + IKPD V+ V+SAC
Sbjct: 325 PQEALRVFEEMCCSGIKPDVVSMFSVISACA 355
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 69/160 (43%), Gaps = 9/160 (5%)
Query: 25 ARQCFDQMP-ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARA 83
A F +P + +++ + R + R + +Q ++ D+F+ + IL A +
Sbjct: 63 ALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVS 122
Query: 84 NLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKFSWTT 135
+ AL G + K D F +DMY C + E + +D +W T
Sbjct: 123 KVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNT 182
Query: 136 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
MI G D+A +F +M +++ PDE+ ++SAC
Sbjct: 183 MIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSAC 222
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 126 bits (317), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 107/189 (56%), Gaps = 11/189 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DVISWT +++ Y G ++ A + F+ +P +D V WTAM+ G+ + + +EAL F
Sbjct: 210 MPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYF 269
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN--KVKNDIFAGNALIDMYC 118
M+ S I DE T+ ++A A L A + K+ + + G+ALIDMY
Sbjct: 270 DRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYS 329
Query: 119 ICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYV 169
C +VE+A K+ F++++MI+GLA G +AL +F M+ + IKP+ V +V
Sbjct: 330 KCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFV 389
Query: 170 GVLSACTHN 178
G L AC+H+
Sbjct: 390 GALMACSHS 398
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 82/190 (43%), Gaps = 39/190 (20%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84
AR+ + + R+ LWTA+I GY +F EA+ ++ M+ I FT ++L A
Sbjct: 102 ARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGT 161
Query: 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------------- 127
++ L+LG + + ++ GN +IDMY C ++ A+
Sbjct: 162 MKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTEL 221
Query: 128 ----------------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165
KD +WT M+ G A + +AL+ F +M ++ I+ DE
Sbjct: 222 IAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADE 281
Query: 166 VAYVGVLSAC 175
V G +SAC
Sbjct: 282 VTVAGYISAC 291
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 18 NRGQVDIARQCFDQM-------PERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+ G VD RQ FD M P RD+ +T M+D R R +EAL L + M
Sbjct: 397 HSGLVDQGRQVFDSMYQTFGVQPTRDH--YTCMVDLLGRTGRLQEALELIKTM 447
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 126 bits (317), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 107/187 (57%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMP--ERDYVLWTAMIDGYLRVNRFREALT 58
M ++ +SW+ +V Y G +++AR FD+MP ++ V WT +I GY +EA
Sbjct: 242 MPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADR 301
Query: 59 LFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC 118
L +M S + D ++SIL A L LG I + + ++ + ++ + NAL+DMY
Sbjct: 302 LVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYA 361
Query: 119 ICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
C +++KA +KD SW TM+ GL + G+G +A+++FS+M R I+PD+V ++
Sbjct: 362 KCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIA 421
Query: 171 VLSACTH 177
VL +C H
Sbjct: 422 VLCSCNH 428
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 10/146 (6%)
Query: 21 QVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80
Q ++A + F+Q+ E + L ++I + + ++ +A +F EMQ + D FT +L
Sbjct: 66 QTNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLK 125
Query: 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV---------EK-AQKDK 130
A + L + + + +I+K + +DI+ NALID Y C + EK +++D
Sbjct: 126 ACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDT 185
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQM 156
SW +M+ GL +G A +F +M
Sbjct: 186 VSWNSMLGGLVKAGELRDARRLFDEM 211
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 88/188 (46%), Gaps = 20/188 (10%)
Query: 3 NKDVISWTAIVSRYINRGQVDI--ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ D+ A++ Y G + + A + F++M ERD V W +M+ G ++ R+A LF
Sbjct: 149 SSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLF 208
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120
EM +++ + R +A +L E + ++N V + + ++ Y
Sbjct: 209 DEMPQRDLISWNTMLDGYARCREMSKAFELFEKMP---ERNTV-----SWSTMVMGYSKA 260
Query: 121 ADVEKAQ----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170
D+E A+ K+ +WT +I G A G +A + QM+ + +K D A +
Sbjct: 261 GDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVIS 320
Query: 171 VLSACTHN 178
+L+ACT +
Sbjct: 321 ILAACTES 328
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
A++ Y G + A F+ +P++D V W M+ G +EA+ LF M+ I
Sbjct: 354 NALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIR 413
Query: 70 GDEFTIVSILTARANLRALDLG 91
D+ T +++L + + +D G
Sbjct: 414 PDKVTFIAVLCSCNHAGLIDEG 435
>sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300
OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
Length = 548
Score = 126 bits (316), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 114/191 (59%), Gaps = 14/191 (7%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD ++W +++ + ++D AR+ FD+ E+D V W AMI GY+ +EAL +F
Sbjct: 204 MPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIF 263
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYI-DKNKVKNDIFAG----NALID 115
+EM+ + D TI+S+L+A A L L+ G+ + YI + V + I+ G NALID
Sbjct: 264 KEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALID 323
Query: 116 MYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 167
MY C +++A +D +W T+IVGLA+ + + +++MF +M R + P+EV
Sbjct: 324 MYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVWPNEVT 382
Query: 168 YVGVLSACTHN 178
++GV+ AC+H+
Sbjct: 383 FIGVILACSHS 393
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79
G + A + FD++P+ D + ++ G + + + ++L+ EM+ + D +T +L
Sbjct: 60 GALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVL 119
Query: 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV--------EKAQKDKF 131
A + L G + ++ + + NALI + C D+ + A+ K
Sbjct: 120 KACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKV 179
Query: 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+W++M G A G D+A+ +F +M D+VA+ +++ C
Sbjct: 180 AWSSMTSGYAKRGKIDEAMRLFDEMPYK----DQVAWNVMITGC 219
>sp|O22137|PP202_ARATH Pentatricopeptide repeat-containing protein At2g45350,
chloroplastic OS=Arabidopsis thaliana GN=CRR4 PE=3 SV=2
Length = 613
Score = 125 bits (315), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 104/187 (55%), Gaps = 9/187 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV++W ++ Y G V A+ FDQMP RD V + +M+ GY++ EAL +F
Sbjct: 278 MPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIF 337
Query: 61 QEMQT-SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+M+ S+++ D+ T+V +L A A L L + YI + + G ALIDMY
Sbjct: 338 SDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSK 397
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C ++ A K W MI GLAI G G+ A DM Q+ R S+KPD++ +VGV
Sbjct: 398 CGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGV 457
Query: 172 LSACTHN 178
L+AC+H+
Sbjct: 458 LNACSHS 464
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 33/176 (18%)
Query: 1 MKNKDVISWTAIVSRYINRGQ-VDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTL 59
M+ K++ISW +++S Y VDIA + F MPE+D + W +MIDGY++ R +A L
Sbjct: 215 MEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGL 274
Query: 60 FQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
F M +++ W T ID + L D
Sbjct: 275 FDVMPRRDVV----------------------TW-ATMIDGYAKLGFVHHAKTLFD---- 307
Query: 120 CADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLSA 174
+ +D ++ +M+ G + +AL++FS M + S + PD+ V VL A
Sbjct: 308 ----QMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPA 359
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 17/182 (9%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D+ ++ Y+ G + ++RQ FD+MP+RD V + +MIDGY++ A LF M
Sbjct: 155 DLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMP 214
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
M + + S+++ A G I + + + + D+ + N++ID Y +E
Sbjct: 215 ME--MKNLISWNSMISGYAQTSD---GVDIASKLFADMPEKDLISWNSMIDGYVKHGRIE 269
Query: 125 KAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A+ +D +W TMI G A G A +F QM D VAY +++
Sbjct: 270 DAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHR----DVVAYNSMMAGYV 325
Query: 177 HN 178
N
Sbjct: 326 QN 327
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 35 RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWI 94
D LW A+I + R+AL L M + + D+F++ +L A + L + G I
Sbjct: 84 EDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQI 143
Query: 95 KTYIDKNKVKNDIFAGNALIDMY--CICADVEK------AQKDKFSWTTMIVGLAISGNG 146
++ K + +D+F N LI +Y C C + + ++D S+ +MI G G
Sbjct: 144 HGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLI 203
Query: 147 DKALDMFSQM 156
A ++F M
Sbjct: 204 VSARELFDLM 213
>sp|Q9LXY5|PP284_ARATH Pentatricopeptide repeat-containing protein At3g56550
OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1
Length = 581
Score = 125 bits (314), Expect = 1e-28, Method: Composition-based stats.
Identities = 58/181 (32%), Positives = 106/181 (58%), Gaps = 8/181 (4%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
D I T++V Y G V+IA + FD+MP RD V W MI + V +AL++++ M
Sbjct: 141 DAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVGLHNQALSMYKRMG 200
Query: 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124
+ GD +T+V++L++ A++ AL++G + + ++ +F NALIDMY C +E
Sbjct: 201 NEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCVFVSNALIDMYAKCGSLE 260
Query: 125 KA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
A ++D +W +MI+G + G+G +A+ F +M+ + ++P+ + ++G+L C+
Sbjct: 261 NAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPNAITFLGLLLGCS 320
Query: 177 H 177
H
Sbjct: 321 H 321
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 104/187 (55%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + ++S TA+++ Y +G V+ AR FD M ERD V W MIDGY + +AL LF
Sbjct: 187 MPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLF 246
Query: 61 QE-MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
Q+ + DE T+V+ L+A + + AL+ G WI ++ ++++ ++ LIDMY
Sbjct: 247 QKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSK 306
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLR-ASIKPDEVAYVG 170
C +E+A +KD +W MI G A+ G AL +F++M ++P ++ ++G
Sbjct: 307 CGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIG 366
Query: 171 VLSACTH 177
L AC H
Sbjct: 367 TLQACAH 373
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 84/202 (41%), Gaps = 46/202 (22%)
Query: 16 YINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFR-EALTLFQEMQTSNIMGDEFT 74
Y + G++ + F Q + D L+TA I+ +N + +A L+ ++ +S I +EFT
Sbjct: 74 YASHGKIRHSLALFHQTIDPDLFLFTAAIN-TASINGLKDQAFLLYVQLLSSEINPNEFT 132
Query: 75 IVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK------ 128
S+L + + G+ I T++ K + D + L+D+Y DV AQK
Sbjct: 133 FSSLLKSCST----KSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMP 188
Query: 129 ---------------------------------DKFSWTTMIVGLAISGNGDKALDMFSQ 155
D SW MI G A G + AL +F +
Sbjct: 189 ERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQK 248
Query: 156 ML-RASIKPDEVAYVGVLSACT 176
+L KPDE+ V LSAC+
Sbjct: 249 LLAEGKPKPDEITVVAALSACS 270
>sp|Q9FLS9|PP441_ARATH Pentatricopeptide repeat-containing protein At5g61800
OS=Arabidopsis thaliana GN=PCMP-E8 PE=2 SV=1
Length = 499
Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 98/183 (53%), Gaps = 8/183 (4%)
Query: 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63
+DV+++ ++ + ++ AR+ FD MP RD V W ++I GY ++N REA+ LF EM
Sbjct: 181 RDVVTYNVLIDGLVKAREIVRARELFDSMPLRDLVSWNSLISGYAQMNHCREAIKLFDEM 240
Query: 64 QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ D IVS L+A A G+ I Y + ++ D F L+D Y C +
Sbjct: 241 VALGLKPDNVAIVSTLSACAQSGDWQKGKAIHDYTKRKRLFIDSFLATGLVDFYAKCGFI 300
Query: 124 EKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+ A K F+W MI GLA+ GNG+ +D F +M+ + IKPD V ++ VL C
Sbjct: 301 DTAMEIFELCSDKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSGIKPDGVTFISVLVGC 360
Query: 176 THN 178
+H+
Sbjct: 361 SHS 363
Score = 36.6 bits (83), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 18/152 (11%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T +V Y G +D A + F+ ++ W AMI G + F++M +S I
Sbjct: 288 TGLVDFYAKCGFIDTAMEIFELCSDKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSGIK 347
Query: 70 GDEFTIVSILTARANL----RALDLGEWIKTYIDKNK------VKNDIFAGNALIDMYCI 119
D T +S+L ++ A +L + +++ D N+ D+ LI+
Sbjct: 348 PDGVTFISVLVGCSHSGLVDEARNLFDQMRSLYDVNREMKHYGCMADLLGRAGLIEE--A 405
Query: 120 CADVEKAQKDK------FSWTTMIVGLAISGN 145
+E+ KD +W+ ++ G I GN
Sbjct: 406 AEMIEQMPKDGGNREKLLAWSGLLGGCRIHGN 437
>sp|Q9LXE8|PP386_ARATH Pentatricopeptide repeat-containing protein At5g15340,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H91 PE=2
SV=1
Length = 623
Score = 124 bits (310), Expect = 5e-28, Method: Composition-based stats.
Identities = 65/194 (33%), Positives = 105/194 (54%), Gaps = 17/194 (8%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
++ K V+SWT ++ + ++ R+ F +MPER+ V WT M+ GYL RE L L
Sbjct: 172 LEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELL 231
Query: 61 QEMQTSNIMGDEF-TIVSILTARANLRALDLGEWIKTYIDKNKVK-------NDIFAGNA 112
EM G F T+ S+L+A A L +G W+ Y K ++ +D+ G A
Sbjct: 232 AEMVFRCGHGLNFVTLCSMLSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTA 291
Query: 113 LIDMYCICADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 164
L+DMY C +++ + +++ +W + GLA+ G G +DMF QM+R +KPD
Sbjct: 292 LVDMYAKCGNIDSSMNVFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPQMIR-EVKPD 350
Query: 165 EVAYVGVLSACTHN 178
++ + VLSAC+H+
Sbjct: 351 DLTFTAVLSACSHS 364
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/210 (21%), Positives = 84/210 (40%), Gaps = 42/210 (20%)
Query: 11 AIVSRYINRGQVDIARQCFDQMP--ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI 68
A+ Y + G++ A++ FD++P E+D V WT ++ + R ++ LF EM+ +
Sbjct: 48 ALFQFYASSGEMVTAQKLFDEIPLSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKRV 107
Query: 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV----- 123
D+ ++V + A L L + K V + NAL+DMY C V
Sbjct: 108 EIDDVSVVCLFGVCAKLEDLGFAQQGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVKR 167
Query: 124 ----------------------------------EKAQKDKFSWTTMIVGLAISGNGDKA 149
E +++ +WT M+ G +G +
Sbjct: 168 IFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREV 227
Query: 150 LDMFSQML-RASIKPDEVAYVGVLSACTHN 178
L++ ++M+ R + V +LSAC +
Sbjct: 228 LELLAEMVFRCGHGLNFVTLCSMLSACAQS 257
Score = 33.5 bits (75), Expect = 0.83, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 108 FAGNALIDMYCICADVEKAQK----------DKFSWTTMIVGLAISGNGDKALDMFSQML 157
+ NAL Y ++ AQK D WTT++ + G ++ +F +M
Sbjct: 44 YLSNALFQFYASSGEMVTAQKLFDEIPLSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMR 103
Query: 158 RASIKPDEVAYVGVLSAC 175
R ++ D+V+ V + C
Sbjct: 104 RKRVEIDDVSVVCLFGVC 121
>sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protein At4g14050,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2
SV=3
Length = 612
Score = 123 bits (309), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 107/186 (57%), Gaps = 9/186 (4%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
++ K+ ISWTA+VS Y G+ + A + F +P ++ WTA+I G+++ + EA ++F
Sbjct: 166 IRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVF 225
Query: 61 QEMQTSNI-MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
EM+ + + D + SI+ A ANL A G + + + +F NALIDMY
Sbjct: 226 TEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAK 285
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171
C+DV A +D SWT++IVG+A G +KAL ++ M+ +KP+EV +VG+
Sbjct: 286 CSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGL 345
Query: 172 LSACTH 177
+ AC+H
Sbjct: 346 IYACSH 351
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 81/151 (53%), Gaps = 9/151 (5%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM-G 70
+V+ Y G A Q FD+MP RD++ W +++ + N + L++F + +S+ +
Sbjct: 44 LVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRP 103
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--- 127
D+F +++ A ANL ++D G + + ++ ND ++L+DMY C + A+
Sbjct: 104 DDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVF 163
Query: 128 -----KDKFSWTTMIVGLAISGNGDKALDMF 153
K+ SWT M+ G A SG ++AL++F
Sbjct: 164 DSIRVKNTISWTAMVSGYAKSGRKEEALELF 194
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 25/165 (15%)
Query: 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70
A++ Y V A+ F +M RD V WT++I G + + +AL L+ +M + +
Sbjct: 278 ALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKP 337
Query: 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDK 130
+E T V ++ A +++ ++ G + + K+ Y I ++
Sbjct: 338 NEVTFVGLIYACSHVGFVEKGRELFQSMTKD---------------YGIRPSLQH----- 377
Query: 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175
+T ++ L SG D+A ++ M PDE + +LSAC
Sbjct: 378 --YTCLLDLLGRSGLLDEAENLIHTM---PFPPDEPTWAALLSAC 417
>sp|O80488|PPR23_ARATH Pentatricopeptide repeat-containing protein At1g09190
OS=Arabidopsis thaliana GN=PCMP-E70 PE=2 SV=1
Length = 484
Score = 123 bits (308), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 102/187 (54%), Gaps = 10/187 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+ W ++ + + G V+ F QM ER V W +MI + R REAL LF
Sbjct: 163 MSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSERSIVSWNSMISSLSKCGRDREALELF 222
Query: 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKND-IFAGNALIDMYCI 119
EM DE T+V++L A+L LD G+WI + + + + D I GNAL+D YC
Sbjct: 223 CEMIDQGFDPDEATVVTVLPISASLGVLDTGKWIHSTAESSGLFKDFITVGNALVDFYCK 282
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQML-RASIKPDEVAYVG 170
D+E A +++ SW T+I G A++G G+ +D+F M+ + P+E ++G
Sbjct: 283 SGDLEAATAIFRKMQRRNVVSWNTLISGSAVNGKGEFGIDLFDAMIEEGKVAPNEATFLG 342
Query: 171 VLSACTH 177
VL+ C++
Sbjct: 343 VLACCSY 349
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 39/189 (20%)
Query: 23 DIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR 82
D A + F + + +++ AMI Y V E+L+ F M++ I DE+T +L +
Sbjct: 53 DYANRVFSHIQNPNVLVFNAMIKCYSLVGPPLESLSFFSSMKSRGIWADEYTYAPLLKSC 112
Query: 83 ANLRALDL-----GEWIKTYI---------------------DKNKV-----KNDIFAGN 111
++L L GE I+T D KV + ++ N
Sbjct: 113 SSLSDLRFGKCVHGELIRTGFHRLGKIRIGVVELYTSGGRMGDAQKVFDEMSERNVVVWN 172
Query: 112 ALIDMYCICADVEK--------AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKP 163
+I +C DVE+ +++ SW +MI L+ G +AL++F +M+ P
Sbjct: 173 LMIRGFCDSGDVERGLHLFKQMSERSIVSWNSMISSLSKCGRDREALELFCEMIDQGFDP 232
Query: 164 DEVAYVGVL 172
DE V VL
Sbjct: 233 DEATVVTVL 241
>sp|Q9C501|PPR70_ARATH Pentatricopeptide repeat-containing protein At1g33350
OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1
Length = 538
Score = 122 bits (307), Expect = 9e-28, Method: Composition-based stats.
Identities = 62/189 (32%), Positives = 109/189 (57%), Gaps = 12/189 (6%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SWTA++S Y G + A F+ MPERD W A++ + F EA++LF
Sbjct: 188 MSERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFLEAVSLF 247
Query: 61 QEM-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
+ M +I +E T+V +L+A A L L + I + + + +D+F N+L+D+Y
Sbjct: 248 RRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNSLVDLYGK 307
Query: 120 CADVEKA--------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS---IKPDEVAY 168
C ++E+A +K +W +MI A+ G ++A+ +F +M++ + IKPD + +
Sbjct: 308 CGNLEEASSVFKMASKKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNINDIKPDHITF 367
Query: 169 VGVLSACTH 177
+G+L+ACTH
Sbjct: 368 IGLLNACTH 376
Score = 35.4 bits (80), Expect = 0.19, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178
E ++++ SWT M+ G A SG+ A+ +F M + D ++ +L+ACT N
Sbjct: 187 EMSERNVVSWTAMLSGYARSGDISNAVALFEDM----PERDVPSWNAILAACTQN 237
>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530
OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1
Length = 834
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 101/183 (55%), Gaps = 8/183 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
N D+ + +A++ Y N + +R FD+M +D V+W +M GY++ + EAL LF E
Sbjct: 486 NLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLE 545
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+Q S DEFT +++TA NL ++ LG+ + K ++ + + NAL+DMY C
Sbjct: 546 LQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGS 605
Query: 123 VEKAQK--------DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
E A K D W ++I A G G KAL M +M+ I+P+ + +VGVLSA
Sbjct: 606 PEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSA 665
Query: 175 CTH 177
C+H
Sbjct: 666 CSH 668
Score = 100 bits (248), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 97/182 (53%), Gaps = 8/182 (4%)
Query: 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQE 62
++DV T ++ Y+ G +D AR FD +PE+ V WT MI G +++ R +L LF +
Sbjct: 180 DRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQ 239
Query: 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122
+ N++ D + + ++L+A + L L+ G+ I +I + ++ D N LID Y C
Sbjct: 240 LMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGR 299
Query: 123 VEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
V A K+ SWTT++ G + +A+++F+ M + +KPD A +L++
Sbjct: 300 VIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTS 359
Query: 175 CT 176
C
Sbjct: 360 CA 361
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 86/161 (53%), Gaps = 11/161 (6%)
Query: 25 ARQCFDQMPERDYVLWTAMIDGYLRVN---RFREALTLFQEMQTSNIMGDEFTIVSILTA 81
AR+ FD D VL+ AMI+GY R+ EAL +F++M+ I T VS+L A
Sbjct: 404 ARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRA 463
Query: 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSW 133
A+L +L L + I + K + DIFAG+ALID+Y C ++ ++ KD W
Sbjct: 464 SASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIW 523
Query: 134 TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174
+M G ++AL++F ++ + +PDE + +++A
Sbjct: 524 NSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTA 564
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 86/174 (49%), Gaps = 11/174 (6%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71
++ Y+ G+V A + F+ MP ++ + WT ++ GY + +EA+ LF M + D
Sbjct: 290 LIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPD 349
Query: 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--- 128
+ SILT+ A+L AL G + Y K + ND + N+LIDMY C + A+K
Sbjct: 350 MYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFD 409
Query: 129 -----DKFSWTTMIVGLAISGNG---DKALDMFSQMLRASIKPDEVAYVGVLSA 174
D + MI G + G +AL++F M I+P + +V +L A
Sbjct: 410 IFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRA 463
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 88/178 (49%), Gaps = 15/178 (8%)
Query: 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM-QTSNIMG 70
+++ Y G + AR+ F++MPER+ V W+ M+ + E+L +F E +T
Sbjct: 85 LINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSP 144
Query: 71 DEFTIVSILTARANLRALDLGEW----IKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126
+E+ + S + A + L G W +++++ K+ D++ G LID Y +++ A
Sbjct: 145 NEYILSSFIQACSGLDGR--GRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYA 202
Query: 127 --------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176
+K +WTTMI G G +L +F Q++ ++ PD VLSAC+
Sbjct: 203 RLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACS 260
>sp|Q9LJJ1|PP259_ARATH Putative pentatricopeptide repeat-containing protein At3g28640
OS=Arabidopsis thaliana GN=PCMP-E79 PE=3 SV=1
Length = 504
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 100/179 (55%), Gaps = 10/179 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T ++ Y+ + AR+ FD++P+ D V W +++GY+R E L +F+EM +
Sbjct: 156 TGVLRIYVEDKLLLDARKVFDEIPQPDVVKWDVLMNGYVRCGLGSEGLEVFREMLVKGLE 215
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNK-VKNDIFAGNALIDMYCICADVEKA-- 126
DEF++ + LTA A + AL G+WI ++ K +++D+F G AL+DMY C +E A
Sbjct: 216 PDEFSVTTALTACAQVGALAQGKWIHEFVKKKSWIESDVFVGTALVDMYAKCGCIETAVE 275
Query: 127 ------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVAYVGVLSACTHN 178
+++ FSW +I G A G KA+ ++ R IKPD V +GVL+AC H
Sbjct: 276 VFKKLTRRNVFSWAALIGGYAAYGYAKKAMTCLERLEREDGIKPDSVVLLGVLAACAHG 334
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV TA+V Y G ++ A + F ++ R+ W A+I GY ++A+T + ++
Sbjct: 253 DVFVGTALVDMYAKCGCIETAVEVFKKLTRRNVFSWAALIGGYAAYGYAKKAMTCLERLE 312
Query: 65 TSN-IMGDEFTIVSILTARANLRALDLG 91
+ I D ++ +L A A+ L+ G
Sbjct: 313 REDGIKPDSVVLLGVLAACAHGGFLEEG 340
>sp|Q9LJI9|PP260_ARATH Pentatricopeptide repeat-containing protein At3g28660
OS=Arabidopsis thaliana GN=PCMP-E80 PE=2 SV=1
Length = 504
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 100/179 (55%), Gaps = 10/179 (5%)
Query: 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM 69
T ++ Y+ + AR+ FD++P+ D V W +++GY+R E L +F+EM I
Sbjct: 156 TGVLRIYVEDKLLFDARKVFDEIPQPDVVKWDVLMNGYVRCGLGSEGLEVFKEMLVRGIE 215
Query: 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNK-VKNDIFAGNALIDMYCICADVEKA-- 126
DEF++ + LTA A + AL G+WI ++ K + +++D+F G AL+DMY C +E A
Sbjct: 216 PDEFSVTTALTACAQVGALAQGKWIHEFVKKKRWIESDVFVGTALVDMYAKCGCIETAVE 275
Query: 127 ------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVAYVGVLSACTHN 178
+++ FSW +I G A G KA ++ R IKPD V +GVL+AC H
Sbjct: 276 VFEKLTRRNVFSWAALIGGYAAYGYAKKATTCLDRIEREDGIKPDSVVLLGVLAACAHG 334
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 27/176 (15%)
Query: 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQ 64
DV TA+V Y G ++ A + F+++ R+ W A+I GY ++A T ++
Sbjct: 253 DVFVGTALVDMYAKCGCIETAVEVFEKLTRRNVFSWAALIGGYAAYGYAKKATTCLDRIE 312
Query: 65 TSN-IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123
+ I D ++ +L A A+ L+ G +T ++ + + I + + Y D+
Sbjct: 313 REDGIKPDSVVLLGVLAACAHGGFLEEG---RTMLENMEARYGITPKH---EHYSCIVDL 366
Query: 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC-THN 178
+ +G D ALD+ +M +KP + +L+ C TH
Sbjct: 367 ----------------MCRAGRLDDALDLIEKM---PMKPLASVWGALLNGCRTHK 403
>sp|P0C8Q7|PP369_ARATH Pentatricopeptide repeat-containing protein At5g08305
OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1
Length = 534
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 106/189 (56%), Gaps = 11/189 (5%)
Query: 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +K++++W +I+ Y G V AR FD+M ERD V W++MIDGY++ + +AL +F
Sbjct: 169 MPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIF 228
Query: 61 -QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119
Q M+ + +E T+VS++ A A+L AL+ G+ + YI + + +LIDMY
Sbjct: 229 DQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQTSLIDMYAK 288
Query: 120 CADVEKA----------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169
C + A + D W +I GLA G ++L +F +M + I PDE+ ++
Sbjct: 289 CGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRESKIDPDEITFL 348
Query: 170 GVLSACTHN 178
+L+AC+H
Sbjct: 349 CLLAACSHG 357
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 90/216 (41%), Gaps = 40/216 (18%)
Query: 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQ 61
+ + +S T S + G VD A + ++ + W +I G+ ++++++
Sbjct: 38 EEEPFVSQTLSFSALSSSGDVDYAYKFLSKLSDPPNYGWNFVIRGFSNSRNPEKSISVYI 97
Query: 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM----- 116
+M ++ D T ++ + + L LG + + K+ ++ D+F N LI M
Sbjct: 98 QMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFR 157
Query: 117 --------------------------YCICADV--------EKAQKDKFSWTTMIVGLAI 142
Y DV E +++D +W++MI G
Sbjct: 158 DQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVK 217
Query: 143 SGNGDKALDMFSQMLR-ASIKPDEVAYVGVLSACTH 177
G +KAL++F QM+R S K +EV V V+ AC H
Sbjct: 218 RGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAH 253
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,374,262
Number of Sequences: 539616
Number of extensions: 2286352
Number of successful extensions: 10726
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 7059
Number of HSP's gapped (non-prelim): 2069
length of query: 178
length of database: 191,569,459
effective HSP length: 110
effective length of query: 68
effective length of database: 132,211,699
effective search space: 8990395532
effective search space used: 8990395532
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (26.6 bits)