Query 036068
Match_columns 178
No_of_seqs 168 out of 1454
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 09:05:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036068.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036068hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 7.9E-39 1.7E-43 255.3 18.7 176 3-178 256-439 (697)
2 PLN03218 maturation of RBCL 1; 100.0 1.1E-36 2.3E-41 248.0 19.4 175 3-177 576-766 (1060)
3 PLN03218 maturation of RBCL 1; 100.0 2.3E-36 5E-41 246.0 19.9 175 3-177 469-661 (1060)
4 PLN03077 Protein ECB2; Provisi 100.0 4.9E-36 1.1E-40 243.9 18.8 175 3-177 219-401 (857)
5 PLN03081 pentatricopeptide (PP 100.0 1.1E-35 2.5E-40 237.2 18.9 175 3-177 155-337 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 1.5E-34 3.2E-39 235.3 19.0 176 2-177 117-300 (857)
7 PF13041 PPR_2: PPR repeat fam 99.7 1E-17 2.2E-22 89.5 6.0 50 128-177 1-50 (50)
8 PF13041 PPR_2: PPR repeat fam 99.7 1.3E-16 2.9E-21 85.1 6.4 50 35-84 1-50 (50)
9 PRK11788 tetratricopeptide rep 99.6 8.7E-14 1.9E-18 104.7 17.0 167 5-174 140-324 (389)
10 KOG4422 Uncharacterized conser 99.6 5.8E-14 1.3E-18 103.1 13.0 169 3-175 204-443 (625)
11 PRK11788 tetratricopeptide rep 99.5 1.5E-12 3.2E-17 98.1 17.4 165 8-175 109-292 (389)
12 KOG4422 Uncharacterized conser 99.4 5.4E-12 1.2E-16 92.9 12.2 127 28-177 198-324 (625)
13 TIGR02917 PEP_TPR_lipo putativ 99.4 6.5E-11 1.4E-15 97.0 18.6 169 5-177 702-883 (899)
14 TIGR02917 PEP_TPR_lipo putativ 99.4 1.2E-10 2.6E-15 95.4 18.7 168 4-174 599-813 (899)
15 TIGR02521 type_IV_pilW type IV 99.2 3.2E-09 7E-14 73.7 18.0 165 5-171 30-209 (234)
16 PF12854 PPR_1: PPR repeat 99.1 1.2E-10 2.6E-15 56.4 3.5 31 3-33 4-34 (34)
17 PF13429 TPR_15: Tetratricopep 99.1 8.6E-10 1.9E-14 79.7 9.4 166 5-174 77-257 (280)
18 PF12854 PPR_1: PPR repeat 99.1 1.3E-10 2.9E-15 56.3 3.1 32 67-98 2-33 (34)
19 PF13429 TPR_15: Tetratricopep 99.1 4E-09 8.6E-14 76.3 11.8 152 4-158 108-276 (280)
20 TIGR02521 type_IV_pilW type IV 99.0 9.2E-08 2E-12 66.4 16.4 155 4-159 63-232 (234)
21 TIGR00756 PPR pentatricopeptid 99.0 1E-09 2.2E-14 53.6 4.5 35 131-165 1-35 (35)
22 PRK15174 Vi polysaccharide exp 99.0 1.1E-07 2.3E-12 76.5 18.0 118 6-125 144-264 (656)
23 TIGR00990 3a0801s09 mitochondr 99.0 7.2E-08 1.6E-12 77.1 16.8 153 5-159 330-496 (615)
24 PRK15174 Vi polysaccharide exp 99.0 1.7E-07 3.6E-12 75.5 18.2 143 15-159 186-347 (656)
25 TIGR00990 3a0801s09 mitochondr 98.9 2.2E-07 4.8E-12 74.3 18.2 152 6-159 365-537 (615)
26 PF13812 PPR_3: Pentatricopept 98.9 2.5E-09 5.5E-14 51.8 4.3 34 130-163 1-34 (34)
27 PRK12370 invasion protein regu 98.9 2.5E-07 5.5E-12 73.1 16.4 120 6-127 338-461 (553)
28 PRK09782 bacteriophage N4 rece 98.9 2.2E-07 4.8E-12 77.3 16.5 105 51-158 590-705 (987)
29 KOG4318 Bicoid mRNA stability 98.9 1.7E-08 3.7E-13 80.5 9.0 157 3-174 22-248 (1088)
30 TIGR00756 PPR pentatricopeptid 98.8 5.3E-09 1.1E-13 50.9 3.8 33 39-71 2-34 (35)
31 PRK10747 putative protoheme IX 98.8 9.9E-07 2.2E-11 67.0 16.9 158 13-176 160-372 (398)
32 PRK12370 invasion protein regu 98.8 8.9E-07 1.9E-11 70.0 17.2 148 20-171 318-480 (553)
33 PF13812 PPR_3: Pentatricopept 98.8 1E-08 2.2E-13 49.6 4.1 33 38-70 2-34 (34)
34 KOG1126 DNA-binding cell divis 98.8 1.3E-07 2.8E-12 73.3 11.3 162 4-172 419-597 (638)
35 PRK09782 bacteriophage N4 rece 98.8 2.2E-06 4.7E-11 71.6 18.9 157 4-165 507-676 (987)
36 PF08579 RPM2: Mitochondrial r 98.8 1.6E-07 3.5E-12 57.4 9.0 88 76-178 29-117 (120)
37 TIGR00540 hemY_coli hemY prote 98.8 1.2E-06 2.7E-11 66.7 16.0 164 12-176 159-381 (409)
38 KOG2003 TPR repeat-containing 98.7 8.1E-07 1.8E-11 66.8 13.6 155 19-176 503-705 (840)
39 PF01535 PPR: PPR repeat; Int 98.7 2E-08 4.3E-13 47.5 3.6 31 131-161 1-31 (31)
40 PF08579 RPM2: Mitochondrial r 98.7 3E-07 6.5E-12 56.2 9.4 81 40-120 28-117 (120)
41 PRK11189 lipoprotein NlpI; Pro 98.7 5.2E-06 1.1E-10 60.7 17.1 159 5-170 97-275 (296)
42 KOG4318 Bicoid mRNA stability 98.7 2.8E-07 6.1E-12 73.8 10.7 162 6-177 59-283 (1088)
43 PF04733 Coatomer_E: Coatomer 98.6 2E-06 4.4E-11 62.5 13.2 144 10-159 106-265 (290)
44 PRK11447 cellulose synthase su 98.6 5.5E-06 1.2E-10 70.9 17.7 150 11-163 578-745 (1157)
45 PRK14574 hmsH outer membrane p 98.6 9.5E-06 2.1E-10 66.6 17.5 159 14-176 42-214 (822)
46 COG3071 HemY Uncharacterized e 98.6 1.5E-05 3.2E-10 58.8 16.4 171 3-176 150-372 (400)
47 PF01535 PPR: PPR repeat; Int 98.6 7.9E-08 1.7E-12 45.4 3.3 30 39-68 2-31 (31)
48 TIGR03302 OM_YfiO outer membra 98.6 1E-05 2.2E-10 56.9 15.2 155 4-159 31-232 (235)
49 PRK10049 pgaA outer membrane p 98.6 1.8E-05 4E-10 65.0 18.2 144 15-158 246-421 (765)
50 COG3071 HemY Uncharacterized e 98.5 1.6E-05 3.4E-10 58.7 15.4 158 2-164 183-395 (400)
51 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 3.5E-06 7.5E-11 63.5 12.1 116 10-127 173-288 (395)
52 PF10037 MRP-S27: Mitochondria 98.5 1.1E-06 2.5E-11 66.4 9.5 116 5-120 65-186 (429)
53 PRK11447 cellulose synthase su 98.5 1.5E-05 3.3E-10 68.2 17.4 88 71-159 602-700 (1157)
54 PF06239 ECSIT: Evolutionarily 98.5 9.6E-07 2.1E-11 60.3 8.2 102 69-177 44-150 (228)
55 COG2956 Predicted N-acetylgluc 98.5 6.4E-06 1.4E-10 59.4 11.8 108 19-127 48-161 (389)
56 KOG1129 TPR repeat-containing 98.5 4.5E-06 9.7E-11 60.5 11.1 159 3-165 253-462 (478)
57 PF10037 MRP-S27: Mitochondria 98.5 4E-06 8.8E-11 63.5 11.3 112 66-177 60-185 (429)
58 PF06239 ECSIT: Evolutionarily 98.5 2.6E-06 5.6E-11 58.2 9.2 103 24-126 32-157 (228)
59 TIGR00540 hemY_coli hemY prote 98.5 3.6E-05 7.8E-10 58.8 16.6 155 9-166 121-297 (409)
60 COG3063 PilF Tfp pilus assembl 98.5 6.5E-05 1.4E-09 51.9 15.8 164 8-173 37-215 (250)
61 PRK10747 putative protoheme IX 98.4 3.9E-05 8.4E-10 58.4 16.3 150 9-159 121-292 (398)
62 COG4783 Putative Zn-dependent 98.4 2.7E-05 5.8E-10 59.0 14.7 136 15-159 315-454 (484)
63 KOG4626 O-linked N-acetylgluco 98.4 2E-05 4.4E-10 61.7 13.6 153 8-165 322-489 (966)
64 PRK10049 pgaA outer membrane p 98.4 4E-05 8.7E-10 63.1 16.1 146 9-157 18-177 (765)
65 PRK15359 type III secretion sy 98.4 3.4E-05 7.3E-10 50.3 12.5 106 36-168 23-128 (144)
66 KOG1126 DNA-binding cell divis 98.3 2.6E-06 5.5E-11 66.3 7.9 150 7-159 354-552 (638)
67 KOG1840 Kinesin light chain [C 98.3 3E-05 6.4E-10 60.2 13.2 152 7-158 200-395 (508)
68 PRK10370 formate-dependent nit 98.3 0.00019 4E-09 49.4 15.9 149 12-171 22-184 (198)
69 KOG1070 rRNA processing protei 98.3 5.2E-05 1.1E-09 64.0 14.6 158 7-165 1459-1669(1710)
70 KOG1840 Kinesin light chain [C 98.3 4E-05 8.6E-10 59.5 13.2 167 6-172 283-498 (508)
71 KOG4626 O-linked N-acetylgluco 98.3 8.8E-06 1.9E-10 63.6 9.5 147 8-157 254-415 (966)
72 COG5010 TadD Flp pilus assembl 98.3 0.0001 2.2E-09 51.8 13.6 144 12-157 72-229 (257)
73 PRK15359 type III secretion sy 98.3 2.9E-05 6.3E-10 50.6 10.5 95 8-103 26-123 (144)
74 TIGR02552 LcrH_SycD type III s 98.2 2.3E-05 5E-10 50.2 9.3 98 4-102 15-115 (135)
75 COG5010 TadD Flp pilus assembl 98.2 0.00012 2.5E-09 51.5 12.2 122 4-127 98-222 (257)
76 COG2956 Predicted N-acetylgluc 98.2 0.0002 4.3E-09 52.0 13.5 148 11-159 112-278 (389)
77 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 9.1E-05 2E-09 56.0 12.3 114 39-157 171-295 (395)
78 KOG1155 Anaphase-promoting com 98.1 7.7E-05 1.7E-09 56.4 11.1 150 7-158 331-494 (559)
79 PRK14574 hmsH outer membrane p 98.1 0.00066 1.4E-08 56.2 17.2 109 15-126 111-222 (822)
80 TIGR02552 LcrH_SycD type III s 98.1 0.00024 5.1E-09 45.5 12.0 110 36-172 16-125 (135)
81 PRK10370 formate-dependent nit 98.1 0.00012 2.6E-09 50.3 11.1 107 19-127 52-164 (198)
82 COG3063 PilF Tfp pilus assembl 98.1 0.00018 3.9E-09 49.8 11.6 119 39-159 37-168 (250)
83 KOG1155 Anaphase-promoting com 98.1 0.00066 1.4E-08 51.6 15.0 168 4-175 362-550 (559)
84 cd05804 StaR_like StaR_like; a 98.0 0.0011 2.3E-08 49.6 16.1 153 7-159 115-293 (355)
85 cd00189 TPR Tetratricopeptide 98.0 6.7E-05 1.5E-09 43.9 8.0 93 8-101 2-97 (100)
86 PRK11189 lipoprotein NlpI; Pro 98.0 0.0012 2.6E-08 48.4 15.8 93 9-102 67-162 (296)
87 KOG0547 Translocase of outer m 98.0 0.00014 3.1E-09 55.4 10.8 152 5-158 393-565 (606)
88 PF09976 TPR_21: Tetratricopep 98.0 0.00085 1.8E-08 43.7 13.4 122 8-155 14-143 (145)
89 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00015 3.3E-09 45.0 9.5 98 7-104 3-108 (119)
90 KOG1129 TPR repeat-containing 97.9 0.00018 3.9E-09 52.4 9.9 147 10-159 227-387 (478)
91 PF04733 Coatomer_E: Coatomer 97.9 0.00035 7.7E-09 50.9 11.2 119 45-173 110-243 (290)
92 PF05843 Suf: Suppressor of fo 97.9 0.00079 1.7E-08 48.9 13.0 142 7-173 2-148 (280)
93 PRK15179 Vi polysaccharide bio 97.9 0.00082 1.8E-08 54.6 14.1 122 4-127 84-208 (694)
94 KOG2076 RNA polymerase III tra 97.9 0.0018 3.8E-08 52.8 15.4 153 4-158 137-308 (895)
95 cd05804 StaR_like StaR_like; a 97.9 0.00078 1.7E-08 50.3 13.1 143 13-159 50-215 (355)
96 PF04840 Vps16_C: Vps16, C-ter 97.9 0.0004 8.6E-09 51.2 10.8 104 8-127 179-282 (319)
97 cd00189 TPR Tetratricopeptide 97.8 0.00057 1.2E-08 39.8 9.7 95 39-158 2-96 (100)
98 COG4783 Putative Zn-dependent 97.8 0.0049 1.1E-07 47.2 15.7 154 3-159 271-437 (484)
99 PF09976 TPR_21: Tetratricopep 97.8 0.00082 1.8E-08 43.8 10.2 23 80-102 56-78 (145)
100 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.0022 4.8E-08 39.7 11.9 101 38-159 3-105 (119)
101 PF12569 NARP1: NMDA receptor- 97.7 0.0013 2.9E-08 51.6 12.5 93 10-103 198-293 (517)
102 PLN03088 SGT1, suppressor of 97.7 0.0016 3.4E-08 49.0 12.4 86 15-101 11-99 (356)
103 PLN02789 farnesyltranstransfer 97.7 0.0081 1.8E-07 44.5 15.8 167 8-177 73-267 (320)
104 KOG2002 TPR-containing nuclear 97.7 0.00013 2.7E-09 59.6 6.7 141 20-161 626-800 (1018)
105 PF12895 Apc3: Anaphase-promot 97.7 5.2E-05 1.1E-09 44.6 3.4 77 19-97 2-83 (84)
106 PRK15179 Vi polysaccharide bio 97.6 0.0033 7.1E-08 51.2 14.0 121 36-159 85-217 (694)
107 KOG1173 Anaphase-promoting com 97.6 0.0034 7.4E-08 48.9 13.0 169 4-175 310-532 (611)
108 TIGR03302 OM_YfiO outer membra 97.6 0.01 2.3E-07 41.7 14.7 123 35-159 31-195 (235)
109 KOG2076 RNA polymerase III tra 97.6 0.0036 7.8E-08 51.1 13.2 121 4-125 412-544 (895)
110 PF12921 ATP13: Mitochondrial 97.6 0.002 4.3E-08 41.0 9.5 50 67-116 47-97 (126)
111 KOG1128 Uncharacterized conser 97.6 0.00069 1.5E-08 54.0 8.6 167 6-173 424-631 (777)
112 CHL00033 ycf3 photosystem I as 97.6 0.0025 5.3E-08 42.6 10.4 90 37-127 35-133 (168)
113 KOG3941 Intermediate in Toll s 97.5 0.0012 2.5E-08 47.4 8.9 102 69-177 64-170 (406)
114 KOG3081 Vesicle coat complex C 97.5 0.0047 1E-07 43.9 11.6 140 13-158 115-270 (299)
115 PRK15363 pathogenicity island 97.5 0.01 2.2E-07 39.0 14.6 110 26-140 23-133 (157)
116 PRK14720 transcript cleavage f 97.5 0.011 2.3E-07 49.4 15.3 150 3-159 28-198 (906)
117 PLN03088 SGT1, suppressor of 97.5 0.0027 5.9E-08 47.8 11.2 81 45-127 10-90 (356)
118 PF14559 TPR_19: Tetratricopep 97.5 0.00039 8.4E-09 38.9 5.2 54 48-102 2-55 (68)
119 PRK02603 photosystem I assembl 97.5 0.0094 2E-07 39.9 12.4 118 36-165 34-153 (172)
120 PF12895 Apc3: Anaphase-promot 97.4 0.00094 2E-08 39.1 6.5 81 50-155 2-83 (84)
121 PF03704 BTAD: Bacterial trans 97.4 0.0015 3.3E-08 42.5 8.0 106 5-111 2-140 (146)
122 PF12921 ATP13: Mitochondrial 97.4 0.0024 5.2E-08 40.6 8.3 95 71-173 1-96 (126)
123 PF13432 TPR_16: Tetratricopep 97.4 0.0013 2.7E-08 36.4 6.4 58 44-102 4-61 (65)
124 KOG1070 rRNA processing protei 97.4 0.017 3.6E-07 49.8 15.1 135 24-159 1443-1629(1710)
125 PF12569 NARP1: NMDA receptor- 97.4 0.033 7.1E-07 44.0 16.0 68 13-82 11-82 (517)
126 CHL00033 ycf3 photosystem I as 97.4 0.011 2.3E-07 39.5 11.8 88 8-96 37-137 (168)
127 KOG1128 Uncharacterized conser 97.4 0.0031 6.7E-08 50.5 10.0 146 8-160 400-583 (777)
128 PF05843 Suf: Suppressor of fo 97.3 0.0013 2.7E-08 47.8 7.4 108 7-117 36-150 (280)
129 KOG3081 Vesicle coat complex C 97.3 0.0036 7.8E-08 44.5 9.1 113 13-127 144-261 (299)
130 PF13414 TPR_11: TPR repeat; P 97.3 0.0022 4.8E-08 35.9 6.8 65 36-101 2-67 (69)
131 PF14559 TPR_19: Tetratricopep 97.3 0.00053 1.2E-08 38.3 4.2 60 17-78 2-64 (68)
132 KOG2047 mRNA splicing factor [ 97.3 0.022 4.8E-07 45.4 14.0 164 7-176 103-292 (835)
133 PF03704 BTAD: Bacterial trans 97.3 0.0014 3E-08 42.6 6.3 68 8-75 64-139 (146)
134 KOG1915 Cell cycle control pro 97.2 0.035 7.6E-07 42.9 14.0 136 19-158 86-235 (677)
135 PRK02603 photosystem I assembl 97.2 0.011 2.3E-07 39.7 10.3 81 6-87 35-121 (172)
136 PRK15363 pathogenicity island 97.2 0.0069 1.5E-07 39.8 8.9 93 9-102 38-133 (157)
137 KOG3941 Intermediate in Toll s 97.2 0.0076 1.6E-07 43.4 9.6 102 25-126 53-177 (406)
138 PRK10803 tol-pal system protei 97.2 0.007 1.5E-07 43.6 9.4 97 8-104 145-249 (263)
139 KOG0985 Vesicle coat protein c 97.2 0.033 7.1E-07 46.9 13.9 84 7-94 1105-1188(1666)
140 PF12688 TPR_5: Tetratrico pep 97.1 0.024 5.3E-07 35.7 10.7 58 45-102 9-68 (120)
141 KOG1915 Cell cycle control pro 97.1 0.059 1.3E-06 41.7 14.3 161 4-165 172-356 (677)
142 KOG2002 TPR-containing nuclear 97.1 0.025 5.4E-07 47.0 12.9 98 4-101 268-371 (1018)
143 KOG0495 HAT repeat protein [RN 97.1 0.1 2.3E-06 42.0 16.2 158 7-168 517-687 (913)
144 PF13281 DUF4071: Domain of un 97.1 0.073 1.6E-06 40.2 15.7 152 11-165 146-339 (374)
145 KOG0553 TPR repeat-containing 97.1 0.0052 1.1E-07 44.3 8.0 89 82-173 91-190 (304)
146 PF13432 TPR_16: Tetratricopep 97.1 0.0017 3.6E-08 35.9 4.4 55 12-66 3-60 (65)
147 KOG3616 Selective LIM binding 97.0 0.011 2.3E-07 48.1 10.1 104 13-127 739-844 (1636)
148 KOG2796 Uncharacterized conser 97.0 0.026 5.7E-07 40.4 10.6 165 6-172 136-326 (366)
149 PF13371 TPR_9: Tetratricopept 97.0 0.0046 1E-07 34.9 5.9 58 45-103 3-60 (73)
150 KOG2376 Signal recognition par 97.0 0.049 1.1E-06 43.0 12.8 84 74-157 112-202 (652)
151 KOG3616 Selective LIM binding 97.0 0.0067 1.4E-07 49.2 8.4 97 46-153 741-847 (1636)
152 KOG0985 Vesicle coat protein c 96.9 0.047 1E-06 46.0 13.0 106 14-127 1056-1186(1666)
153 PLN02789 farnesyltranstransfer 96.9 0.081 1.8E-06 39.3 13.4 117 9-127 40-162 (320)
154 PF13424 TPR_12: Tetratricopep 96.9 0.011 2.3E-07 33.9 7.1 70 72-158 5-74 (78)
155 KOG1173 Anaphase-promoting com 96.9 0.014 3.1E-07 45.6 9.4 112 15-127 389-509 (611)
156 KOG4340 Uncharacterized conser 96.8 0.042 9.1E-07 40.1 10.7 85 19-104 125-210 (459)
157 KOG3060 Uncharacterized conser 96.8 0.1 2.2E-06 37.2 13.1 116 40-158 55-182 (289)
158 PRK10153 DNA-binding transcrip 96.8 0.14 3E-06 40.7 14.5 130 35-168 335-489 (517)
159 PF13414 TPR_11: TPR repeat; P 96.8 0.0032 6.9E-08 35.2 4.0 62 5-66 2-67 (69)
160 PRK10803 tol-pal system protei 96.7 0.042 9.1E-07 39.6 10.5 104 38-166 144-251 (263)
161 PF13424 TPR_12: Tetratricopep 96.7 0.0051 1.1E-07 35.3 4.8 63 38-100 6-74 (78)
162 KOG1174 Anaphase-promoting com 96.7 0.18 4E-06 38.5 13.4 120 4-127 230-388 (564)
163 PF13512 TPR_18: Tetratricopep 96.6 0.052 1.1E-06 35.1 8.9 81 5-85 9-95 (142)
164 KOG0547 Translocase of outer m 96.5 0.068 1.5E-06 41.5 10.6 148 9-158 363-531 (606)
165 PRK14720 transcript cleavage f 96.5 0.057 1.2E-06 45.3 11.1 118 38-159 117-252 (906)
166 PRK10866 outer membrane biogen 96.5 0.18 3.9E-06 35.9 15.9 62 6-67 32-99 (243)
167 PF13525 YfiO: Outer membrane 96.5 0.16 3.4E-06 35.1 12.7 148 2-159 1-170 (203)
168 KOG1914 mRNA cleavage and poly 96.5 0.26 5.7E-06 38.9 13.5 29 130-158 472-500 (656)
169 COG4235 Cytochrome c biogenesi 96.4 0.079 1.7E-06 38.4 10.1 99 4-103 154-258 (287)
170 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.041 8.8E-07 42.3 9.1 63 4-66 73-141 (453)
171 KOG2053 Mitochondrial inherita 96.4 0.43 9.3E-06 39.7 15.1 71 17-89 54-127 (932)
172 PRK10153 DNA-binding transcrip 96.4 0.1 2.3E-06 41.4 11.6 124 2-127 333-473 (517)
173 KOG0495 HAT repeat protein [RN 96.4 0.39 8.5E-06 38.9 15.2 146 11-158 589-781 (913)
174 PF14938 SNAP: Soluble NSF att 96.4 0.23 4.9E-06 36.2 14.1 167 8-176 37-246 (282)
175 KOG4570 Uncharacterized conser 96.4 0.019 4.2E-07 42.0 6.8 90 9-102 67-165 (418)
176 KOG1125 TPR repeat-containing 96.4 0.2 4.3E-06 39.6 12.5 142 15-158 294-492 (579)
177 KOG2053 Mitochondrial inherita 96.4 0.079 1.7E-06 43.8 10.8 106 17-125 20-128 (932)
178 KOG2003 TPR repeat-containing 96.4 0.33 7.1E-06 37.6 14.2 125 18-145 536-709 (840)
179 KOG3060 Uncharacterized conser 96.3 0.23 4.9E-06 35.4 14.3 147 8-159 54-220 (289)
180 KOG3785 Uncharacterized conser 96.3 0.095 2.1E-06 39.2 10.1 155 11-168 290-497 (557)
181 PF13371 TPR_9: Tetratricopept 96.3 0.021 4.5E-07 32.1 5.4 60 13-74 2-64 (73)
182 PF04840 Vps16_C: Vps16, C-ter 96.2 0.089 1.9E-06 39.1 9.5 106 39-155 179-287 (319)
183 COG4235 Cytochrome c biogenesi 96.1 0.35 7.5E-06 35.2 12.1 110 36-172 155-267 (287)
184 PRK04841 transcriptional regul 96.1 0.65 1.4E-05 39.4 15.3 146 13-158 459-640 (903)
185 cd00923 Cyt_c_Oxidase_Va Cytoc 95.9 0.079 1.7E-06 31.8 6.6 63 52-116 22-85 (103)
186 KOG1125 TPR repeat-containing 95.9 0.13 2.8E-06 40.5 9.5 60 40-100 433-492 (579)
187 PF13170 DUF4003: Protein of u 95.9 0.14 3.1E-06 37.6 9.4 116 53-170 78-222 (297)
188 COG3629 DnrI DNA-binding trans 95.8 0.097 2.1E-06 37.9 8.1 77 39-116 155-236 (280)
189 PF00637 Clathrin: Region in C 95.8 0.017 3.7E-07 37.4 4.0 52 44-95 14-65 (143)
190 PRK15331 chaperone protein Sic 95.8 0.071 1.5E-06 35.4 6.8 76 49-126 49-124 (165)
191 PF13176 TPR_7: Tetratricopept 95.7 0.033 7.1E-07 26.8 3.9 26 132-157 1-26 (36)
192 PF07079 DUF1347: Protein of u 95.7 0.18 3.9E-06 38.9 9.4 147 16-177 16-179 (549)
193 KOG0553 TPR repeat-containing 95.7 0.094 2E-06 38.1 7.5 99 15-116 90-191 (304)
194 KOG1914 mRNA cleavage and poly 95.7 0.61 1.3E-05 36.9 12.2 118 53-172 347-479 (656)
195 PF09205 DUF1955: Domain of un 95.7 0.22 4.9E-06 31.9 8.2 69 36-105 85-153 (161)
196 KOG1156 N-terminal acetyltrans 95.6 0.9 1.9E-05 36.7 13.1 100 3-103 366-470 (700)
197 PRK04841 transcriptional regul 95.6 0.92 2E-05 38.5 14.3 93 8-100 533-640 (903)
198 COG4700 Uncharacterized protei 95.6 0.46 9.9E-06 32.5 11.3 93 35-127 87-180 (251)
199 PF04053 Coatomer_WDAD: Coatom 95.6 0.26 5.5E-06 38.4 10.1 124 9-155 298-427 (443)
200 PF02284 COX5A: Cytochrome c o 95.5 0.14 3.1E-06 31.0 6.8 76 40-116 11-88 (108)
201 PF00637 Clathrin: Region in C 95.5 0.019 4E-07 37.1 3.4 80 77-156 12-96 (143)
202 COG4700 Uncharacterized protei 95.5 0.49 1.1E-05 32.4 12.4 121 4-126 87-212 (251)
203 PLN03098 LPA1 LOW PSII ACCUMUL 95.5 0.3 6.6E-06 37.7 10.0 88 36-125 74-179 (453)
204 COG3629 DnrI DNA-binding trans 95.4 0.31 6.7E-06 35.4 9.5 75 7-81 154-236 (280)
205 KOG2047 mRNA splicing factor [ 95.4 0.61 1.3E-05 37.7 11.6 137 7-143 139-294 (835)
206 PF13512 TPR_18: Tetratricopep 95.4 0.25 5.4E-06 32.0 8.0 118 39-165 13-132 (142)
207 KOG0548 Molecular co-chaperone 95.3 0.88 1.9E-05 35.8 11.9 156 9-167 260-461 (539)
208 KOG4340 Uncharacterized conser 95.1 0.82 1.8E-05 33.7 10.6 90 9-100 13-106 (459)
209 PF10602 RPN7: 26S proteasome 95.0 0.26 5.6E-06 33.3 7.8 55 9-63 39-99 (177)
210 KOG1156 N-terminal acetyltrans 94.9 1.7 3.7E-05 35.2 13.6 163 9-174 78-261 (700)
211 KOG2610 Uncharacterized conser 94.7 0.66 1.4E-05 34.7 9.4 138 19-157 116-274 (491)
212 PF13428 TPR_14: Tetratricopep 94.7 0.18 3.9E-06 25.4 5.0 35 131-167 2-36 (44)
213 PF10602 RPN7: 26S proteasome 94.7 0.56 1.2E-05 31.7 8.7 65 37-101 36-102 (177)
214 PF13525 YfiO: Outer membrane 94.7 0.94 2E-05 31.2 12.9 113 44-156 12-136 (203)
215 PF13176 TPR_7: Tetratricopept 94.6 0.11 2.3E-06 25.0 3.7 23 40-62 2-24 (36)
216 smart00299 CLH Clathrin heavy 94.5 0.56 1.2E-05 30.1 8.2 126 37-176 7-136 (140)
217 KOG3617 WD40 and TPR repeat-co 94.5 1 2.3E-05 37.7 11.0 48 110-157 941-994 (1416)
218 PF13762 MNE1: Mitochondrial s 94.5 0.79 1.7E-05 29.9 8.6 77 9-85 42-128 (145)
219 PRK10866 outer membrane biogen 94.5 1.2 2.7E-05 31.7 13.9 140 36-175 31-222 (243)
220 KOG2376 Signal recognition par 94.4 2.1 4.6E-05 34.4 15.8 155 20-177 321-504 (652)
221 PF13428 TPR_14: Tetratricopep 94.4 0.19 4.1E-06 25.3 4.7 27 75-101 4-30 (44)
222 smart00299 CLH Clathrin heavy 94.4 0.81 1.8E-05 29.3 12.1 84 8-98 9-95 (140)
223 COG1729 Uncharacterized protei 94.1 0.73 1.6E-05 33.1 8.5 97 8-105 144-248 (262)
224 KOG4162 Predicted calmodulin-b 94.0 2.8 6.1E-05 34.7 12.4 117 40-158 653-782 (799)
225 KOG4162 Predicted calmodulin-b 94.0 3 6.5E-05 34.5 13.9 97 4-100 321-422 (799)
226 COG5107 RNA14 Pre-mRNA 3'-end 94.0 2.3 5E-05 33.2 12.0 111 8-124 399-519 (660)
227 KOG2280 Vacuolar assembly/sort 94.0 0.8 1.7E-05 37.6 9.3 102 10-126 688-789 (829)
228 PRK15331 chaperone protein Sic 93.9 1.2 2.7E-05 29.6 10.5 75 83-158 48-133 (165)
229 PF13374 TPR_10: Tetratricopep 93.8 0.19 4E-06 24.5 3.9 28 131-158 3-30 (42)
230 KOG3785 Uncharacterized conser 93.8 1.4 3.1E-05 33.3 9.6 141 13-159 29-180 (557)
231 KOG1127 TPR repeat-containing 93.7 0.55 1.2E-05 39.9 8.2 117 39-157 494-623 (1238)
232 KOG3617 WD40 and TPR repeat-co 93.7 2.7 5.9E-05 35.4 11.9 56 8-63 914-993 (1416)
233 COG5107 RNA14 Pre-mRNA 3'-end 93.7 2.7 6E-05 32.8 12.6 133 36-172 396-542 (660)
234 KOG1127 TPR repeat-containing 93.5 2.9 6.3E-05 35.8 11.9 150 8-158 494-658 (1238)
235 PF11207 DUF2989: Protein of u 93.5 1.6 3.5E-05 30.1 8.9 79 46-126 116-197 (203)
236 KOG2114 Vacuolar assembly/sort 93.5 0.52 1.1E-05 39.1 7.5 109 11-127 339-451 (933)
237 PF04053 Coatomer_WDAD: Coatom 93.4 3.1 6.7E-05 32.6 12.4 112 12-150 324-435 (443)
238 KOG1538 Uncharacterized conser 93.4 0.94 2E-05 36.9 8.7 117 20-159 730-846 (1081)
239 KOG1174 Anaphase-promoting com 93.3 3 6.5E-05 32.3 12.2 151 6-158 334-499 (564)
240 KOG0624 dsRNA-activated protei 93.0 3 6.5E-05 31.5 12.2 112 46-158 115-251 (504)
241 PF07035 Mic1: Colon cancer-as 92.8 2 4.2E-05 28.8 10.3 24 64-87 21-44 (167)
242 PF13929 mRNA_stabil: mRNA sta 92.8 2.4 5.2E-05 31.0 9.4 105 19-123 141-254 (292)
243 KOG0548 Molecular co-chaperone 92.7 1 2.2E-05 35.5 7.8 76 82-158 12-98 (539)
244 PF12688 TPR_5: Tetratrico pep 92.6 1.7 3.6E-05 27.4 10.6 101 12-118 7-117 (120)
245 PF14938 SNAP: Soluble NSF att 92.5 3.1 6.7E-05 30.3 12.7 118 38-159 56-184 (282)
246 PF13762 MNE1: Mitochondrial s 92.5 2 4.3E-05 28.0 10.9 98 63-178 28-128 (145)
247 PF13929 mRNA_stabil: mRNA sta 92.3 1.5 3.3E-05 32.0 7.9 86 34-119 199-290 (292)
248 KOG2796 Uncharacterized conser 92.3 1 2.2E-05 32.6 6.9 120 7-127 178-306 (366)
249 PF11848 DUF3368: Domain of un 92.2 0.78 1.7E-05 23.7 4.8 38 137-174 9-46 (48)
250 KOG0624 dsRNA-activated protei 91.9 4.3 9.4E-05 30.7 12.1 111 15-127 115-243 (504)
251 COG0735 Fur Fe2+/Zn2+ uptake r 91.9 1.6 3.6E-05 28.4 7.2 69 58-127 7-75 (145)
252 PF09613 HrpB1_HrpK: Bacterial 91.8 2.6 5.7E-05 28.0 9.2 91 12-105 16-110 (160)
253 PF13374 TPR_10: Tetratricopep 91.8 0.54 1.2E-05 22.8 4.0 25 39-63 4-28 (42)
254 PF00515 TPR_1: Tetratricopept 91.7 0.62 1.3E-05 21.6 3.9 29 131-159 2-30 (34)
255 KOG0550 Molecular chaperone (D 91.5 4 8.7E-05 31.5 9.6 143 15-159 178-350 (486)
256 KOG4077 Cytochrome c oxidase, 91.3 1.7 3.6E-05 27.7 6.3 59 56-115 68-126 (149)
257 TIGR03504 FimV_Cterm FimV C-te 90.9 0.82 1.8E-05 23.2 4.0 25 43-67 5-29 (44)
258 KOG0543 FKBP-type peptidyl-pro 90.9 3.6 7.9E-05 31.4 8.8 89 14-103 216-322 (397)
259 cd00280 TRFH Telomeric Repeat 90.8 3.6 7.9E-05 28.0 7.9 94 53-158 85-185 (200)
260 KOG2280 Vacuolar assembly/sort 90.7 2.5 5.4E-05 34.9 8.3 107 39-155 686-795 (829)
261 COG3118 Thioredoxin domain-con 90.6 5.4 0.00012 29.3 11.5 110 48-158 145-264 (304)
262 COG1729 Uncharacterized protei 90.6 5.1 0.00011 29.0 9.8 88 75-165 145-248 (262)
263 TIGR02561 HrpB1_HrpK type III 90.5 3.5 7.6E-05 27.1 8.6 88 15-107 19-112 (153)
264 COG4105 ComL DNA uptake lipopr 90.3 5.2 0.00011 28.7 15.7 70 13-83 41-117 (254)
265 PRK10564 maltose regulon perip 90.2 0.8 1.7E-05 33.6 4.9 46 128-173 254-300 (303)
266 PF13174 TPR_6: Tetratricopept 90.2 0.57 1.2E-05 21.3 3.0 28 135-164 5-32 (33)
267 PF07719 TPR_2: Tetratricopept 90.1 1.1 2.4E-05 20.5 4.0 28 132-159 3-30 (34)
268 KOG4555 TPR repeat-containing 90.0 3.7 8E-05 26.5 7.2 51 47-98 53-103 (175)
269 COG3118 Thioredoxin domain-con 89.9 6.3 0.00014 29.0 11.4 111 14-127 142-256 (304)
270 PF07575 Nucleopor_Nup85: Nup8 89.8 0.78 1.7E-05 37.0 5.0 147 25-174 393-539 (566)
271 PF09205 DUF1955: Domain of un 89.6 4 8.7E-05 26.4 9.9 108 16-124 12-137 (161)
272 KOG4555 TPR repeat-containing 89.5 4.1 8.9E-05 26.3 8.2 89 15-103 52-146 (175)
273 PF13431 TPR_17: Tetratricopep 89.5 0.51 1.1E-05 22.3 2.4 24 3-26 10-33 (34)
274 PF07721 TPR_4: Tetratricopept 89.4 0.9 2E-05 19.9 3.1 21 10-30 5-25 (26)
275 TIGR03504 FimV_Cterm FimV C-te 89.0 1.1 2.3E-05 22.7 3.5 26 135-160 4-29 (44)
276 PF13181 TPR_8: Tetratricopept 88.6 1.5 3.3E-05 20.1 4.0 27 132-158 3-29 (34)
277 PF00515 TPR_1: Tetratricopept 88.6 1.5 3.3E-05 20.2 3.9 27 39-65 3-29 (34)
278 COG4105 ComL DNA uptake lipopr 88.4 7.5 0.00016 27.9 9.9 122 37-159 35-196 (254)
279 KOG0543 FKBP-type peptidyl-pro 88.0 8.3 0.00018 29.6 8.9 92 7-100 258-354 (397)
280 PF07079 DUF1347: Protein of u 87.8 5.6 0.00012 31.2 8.0 111 10-121 50-181 (549)
281 TIGR02508 type_III_yscG type I 87.5 4.8 0.0001 24.6 7.1 75 22-102 21-98 (115)
282 PF11848 DUF3368: Domain of un 87.3 2.3 4.9E-05 21.9 4.2 30 85-114 15-44 (48)
283 COG3898 Uncharacterized membra 87.2 12 0.00026 28.9 14.1 141 18-159 132-292 (531)
284 PF11663 Toxin_YhaV: Toxin wit 87.0 0.92 2E-05 29.1 3.0 31 50-82 108-138 (140)
285 PF02259 FAT: FAT domain; Int 86.9 11 0.00023 28.1 11.9 146 12-160 4-176 (352)
286 PF13170 DUF4003: Protein of u 86.8 2.8 6E-05 31.0 5.9 99 22-123 119-232 (297)
287 KOG4570 Uncharacterized conser 86.5 12 0.00025 28.1 8.9 90 36-127 63-155 (418)
288 KOG2041 WD40 repeat protein [G 86.4 17 0.00038 30.4 10.3 21 106-126 851-871 (1189)
289 KOG0276 Vesicle coat complex C 86.3 17 0.00037 29.8 10.7 92 49-155 649-746 (794)
290 COG4455 ImpE Protein of avirul 86.1 2.9 6.4E-05 29.4 5.3 81 39-120 3-85 (273)
291 PF13281 DUF4071: Domain of un 86.0 14 0.00029 28.4 9.9 81 39-119 143-229 (374)
292 PF10366 Vps39_1: Vacuolar sor 85.4 2.8 6E-05 25.9 4.6 30 129-158 38-67 (108)
293 PF07035 Mic1: Colon cancer-as 85.1 8.4 0.00018 25.8 7.0 65 92-156 14-115 (167)
294 PF14689 SPOB_a: Sensor_kinase 84.5 3.1 6.8E-05 22.7 4.1 46 53-100 6-51 (62)
295 PF02847 MA3: MA3 domain; Int 84.4 7.2 0.00016 23.9 7.9 22 42-63 7-28 (113)
296 KOG1538 Uncharacterized conser 84.0 18 0.0004 30.0 9.4 75 73-156 748-830 (1081)
297 PF04184 ST7: ST7 protein; In 83.4 14 0.00031 29.4 8.4 80 43-122 265-346 (539)
298 KOG2063 Vacuolar assembly/sort 83.4 28 0.00062 29.9 13.5 170 8-177 506-744 (877)
299 PF14689 SPOB_a: Sensor_kinase 83.4 2.7 5.9E-05 23.0 3.5 25 134-158 27-51 (62)
300 PRK10564 maltose regulon perip 83.3 3.3 7.1E-05 30.5 4.8 41 37-77 257-297 (303)
301 PRK11639 zinc uptake transcrip 83.3 11 0.00024 25.2 7.5 66 61-127 15-80 (169)
302 PF02847 MA3: MA3 domain; Int 82.3 9 0.0002 23.4 7.5 62 10-71 6-71 (113)
303 PF07163 Pex26: Pex26 protein; 81.9 18 0.00039 26.6 8.1 83 13-95 90-181 (309)
304 PF10366 Vps39_1: Vacuolar sor 81.7 9.9 0.00021 23.4 6.9 55 10-65 3-67 (108)
305 PF10579 Rapsyn_N: Rapsyn N-te 81.1 5.9 0.00013 22.9 4.4 46 49-94 18-65 (80)
306 PF04184 ST7: ST7 protein; In 81.0 27 0.00058 28.0 9.4 51 77-127 264-315 (539)
307 COG1747 Uncharacterized N-term 81.0 28 0.0006 28.1 11.3 146 8-158 68-233 (711)
308 PRK13342 recombination factor 80.8 24 0.00052 27.4 12.3 115 53-174 153-274 (413)
309 PF10300 DUF3808: Protein of u 80.8 26 0.00057 27.8 15.1 161 14-176 275-464 (468)
310 PF07163 Pex26: Pex26 protein; 80.8 20 0.00043 26.4 9.7 118 8-127 37-178 (309)
311 smart00028 TPR Tetratricopepti 80.6 3.5 7.5E-05 17.5 3.1 28 131-158 2-29 (34)
312 PF11846 DUF3366: Domain of un 79.2 6.6 0.00014 26.8 5.1 66 36-103 107-175 (193)
313 PF09477 Type_III_YscG: Bacter 79.2 13 0.00027 23.1 7.4 79 87-169 21-107 (116)
314 COG3947 Response regulator con 78.5 20 0.00044 26.6 7.3 41 129-169 312-357 (361)
315 cd07153 Fur_like Ferric uptake 78.3 7.9 0.00017 23.8 4.9 50 78-127 6-55 (116)
316 PRK09462 fur ferric uptake reg 78.2 16 0.00035 23.8 7.6 66 61-127 6-72 (148)
317 cd08819 CARD_MDA5_2 Caspase ac 78.1 8.3 0.00018 22.8 4.5 62 56-123 21-82 (88)
318 COG4785 NlpI Lipoprotein NlpI, 78.0 22 0.00048 25.3 13.6 151 4-161 97-268 (297)
319 KOG0991 Replication factor C, 77.7 24 0.00052 25.5 9.9 82 82-166 169-274 (333)
320 PF01475 FUR: Ferric uptake re 77.2 6.6 0.00014 24.4 4.3 52 76-127 11-62 (120)
321 KOG2066 Vacuolar assembly/sort 77.1 44 0.00096 28.3 11.1 53 13-65 363-420 (846)
322 COG3947 Response regulator con 76.8 28 0.00061 25.9 7.9 49 75-124 282-330 (361)
323 KOG0403 Neoplastic transformat 76.6 30 0.00065 27.4 8.1 72 10-85 513-587 (645)
324 KOG4648 Uncharacterized conser 76.4 7.7 0.00017 29.4 4.9 47 46-94 106-153 (536)
325 PF12796 Ank_2: Ankyrin repeat 75.5 13 0.00028 21.3 5.2 82 14-106 2-86 (89)
326 PRK15180 Vi polysaccharide bio 75.2 6.6 0.00014 31.2 4.5 87 15-102 332-421 (831)
327 COG4455 ImpE Protein of avirul 75.0 27 0.00059 24.8 7.6 74 8-81 3-81 (273)
328 cd00923 Cyt_c_Oxidase_Va Cytoc 74.7 14 0.0003 22.5 4.8 30 128-157 40-69 (103)
329 PF11846 DUF3366: Domain of un 74.6 10 0.00022 25.8 5.0 53 75-127 111-164 (193)
330 smart00638 LPD_N Lipoprotein N 74.1 46 0.001 27.0 13.0 114 5-121 309-432 (574)
331 PF10300 DUF3808: Protein of u 73.8 43 0.00094 26.6 13.8 118 40-159 191-334 (468)
332 KOG2063 Vacuolar assembly/sort 73.7 42 0.00091 29.0 8.9 127 39-176 506-637 (877)
333 KOG2114 Vacuolar assembly/sort 72.9 60 0.0013 27.8 12.2 150 13-168 375-528 (933)
334 PF14853 Fis1_TPR_C: Fis1 C-te 72.7 12 0.00026 19.7 4.7 37 135-173 6-42 (53)
335 COG4649 Uncharacterized protei 72.0 29 0.00063 23.8 11.8 129 36-165 58-202 (221)
336 PF11663 Toxin_YhaV: Toxin wit 72.0 3.5 7.5E-05 26.5 2.0 32 142-175 107-138 (140)
337 KOG4648 Uncharacterized conser 71.9 8.4 0.00018 29.2 4.2 76 81-157 106-185 (536)
338 cd08819 CARD_MDA5_2 Caspase ac 71.4 19 0.00041 21.3 7.0 63 25-92 21-86 (88)
339 PF11207 DUF2989: Protein of u 70.8 33 0.00071 23.9 8.0 76 15-92 116-198 (203)
340 smart00544 MA3 Domain in DAP-5 70.8 21 0.00046 21.8 9.6 24 12-35 8-31 (113)
341 COG5108 RPO41 Mitochondrial DN 70.6 32 0.00069 28.8 7.3 78 42-119 33-115 (1117)
342 PF11817 Foie-gras_1: Foie gra 70.5 32 0.0007 24.6 6.9 50 76-125 182-236 (247)
343 KOG1585 Protein required for f 70.4 39 0.00084 24.6 8.0 24 129-153 227-250 (308)
344 PF11768 DUF3312: Protein of u 70.2 36 0.00077 27.5 7.4 114 39-160 410-524 (545)
345 PF13934 ELYS: Nuclear pore co 69.7 37 0.00079 24.0 7.4 103 9-118 79-183 (226)
346 smart00544 MA3 Domain in DAP-5 69.4 23 0.0005 21.6 10.7 83 40-124 5-89 (113)
347 PF08311 Mad3_BUB1_I: Mad3/BUB 69.3 26 0.00057 22.2 8.1 59 36-97 65-124 (126)
348 KOG1586 Protein required for f 68.0 43 0.00093 24.2 8.6 146 18-164 26-188 (288)
349 PF09454 Vps23_core: Vps23 cor 67.7 19 0.0004 20.0 4.1 49 35-84 6-54 (65)
350 PRK09687 putative lyase; Provi 67.1 48 0.001 24.3 17.8 71 104-177 203-279 (280)
351 cd08326 CARD_CASP9 Caspase act 66.8 21 0.00045 20.9 4.4 33 85-121 43-75 (84)
352 PF10255 Paf67: RNA polymerase 66.7 58 0.0013 25.4 7.9 94 6-99 75-191 (404)
353 PRK14956 DNA polymerase III su 66.7 65 0.0014 25.8 11.2 99 57-167 186-285 (484)
354 PF08631 SPO22: Meiosis protei 66.6 48 0.001 24.2 13.0 149 17-166 4-193 (278)
355 PF10475 DUF2450: Protein of u 66.4 50 0.0011 24.3 8.4 87 36-127 126-217 (291)
356 COG2405 Predicted nucleic acid 66.2 17 0.00037 23.6 4.2 39 136-174 115-153 (157)
357 PRK13341 recombination factor 66.0 83 0.0018 26.7 12.0 113 54-174 171-302 (725)
358 COG0457 NrfG FOG: TPR repeat [ 65.8 35 0.00077 22.4 15.0 58 8-65 61-123 (291)
359 COG5108 RPO41 Mitochondrial DN 65.3 56 0.0012 27.5 7.7 90 11-100 33-131 (1117)
360 KOG2034 Vacuolar sorting prote 64.9 66 0.0014 27.7 8.2 47 110-156 507-556 (911)
361 COG2178 Predicted RNA-binding 64.7 35 0.00075 23.6 5.7 94 6-100 29-149 (204)
362 cd07153 Fur_like Ferric uptake 64.0 25 0.00054 21.6 4.8 48 42-89 5-52 (116)
363 TIGR02508 type_III_yscG type I 63.9 32 0.00068 21.2 7.4 53 114-169 46-106 (115)
364 KOG1920 IkappaB kinase complex 63.9 86 0.0019 28.1 8.8 13 115-127 1034-1046(1265)
365 PF02284 COX5A: Cytochrome c o 63.6 32 0.0007 21.1 7.3 45 128-173 43-87 (108)
366 PF09670 Cas_Cas02710: CRISPR- 62.5 70 0.0015 24.7 12.0 55 46-101 140-198 (379)
367 PRK11639 zinc uptake transcrip 62.1 45 0.00098 22.4 6.0 67 23-89 11-77 (169)
368 PF14669 Asp_Glu_race_2: Putat 62.0 25 0.00055 24.4 4.6 55 42-96 137-205 (233)
369 PRK14958 DNA polymerase III su 62.0 84 0.0018 25.4 10.7 88 65-165 193-280 (509)
370 TIGR02561 HrpB1_HrpK type III 61.8 44 0.00095 22.1 11.2 95 49-158 22-121 (153)
371 PF12069 DUF3549: Protein of u 61.8 69 0.0015 24.3 13.7 137 12-157 172-309 (340)
372 cd08326 CARD_CASP9 Caspase act 61.4 21 0.00045 20.9 3.7 63 25-91 18-80 (84)
373 PF03745 DUF309: Domain of unk 61.3 25 0.00055 19.2 4.8 35 48-82 10-44 (62)
374 KOG1258 mRNA processing protei 60.6 93 0.002 25.5 15.0 165 3-174 294-484 (577)
375 COG5159 RPN6 26S proteasome re 60.5 69 0.0015 23.9 10.9 49 45-93 11-66 (421)
376 COG2405 Predicted nucleic acid 60.4 23 0.00049 23.1 3.9 39 79-117 116-154 (157)
377 PF05476 PET122: PET122; Inte 60.3 63 0.0014 23.4 8.6 111 15-125 19-142 (267)
378 PRK09687 putative lyase; Provi 60.3 65 0.0014 23.6 17.2 60 4-63 35-98 (280)
379 COG2976 Uncharacterized protei 60.3 55 0.0012 22.8 7.4 89 12-102 95-189 (207)
380 KOG0550 Molecular chaperone (D 60.1 44 0.00096 26.2 6.0 106 19-127 216-341 (486)
381 PRK15180 Vi polysaccharide bio 59.8 45 0.00098 26.8 6.2 109 48-159 300-420 (831)
382 PF01475 FUR: Ferric uptake re 59.7 22 0.00049 22.0 4.0 48 41-88 11-58 (120)
383 PF02259 FAT: FAT domain; Int 59.7 70 0.0015 23.7 10.6 64 2-65 142-212 (352)
384 COG4649 Uncharacterized protei 59.5 55 0.0012 22.5 8.0 112 16-127 68-187 (221)
385 KOG2908 26S proteasome regulat 59.0 78 0.0017 24.1 13.9 88 40-127 78-177 (380)
386 PF12554 MOZART1: Mitotic-spin 58.9 23 0.00049 18.3 3.2 29 137-165 11-39 (48)
387 KOG2041 WD40 repeat protein [G 58.8 1.1E+02 0.0025 26.0 11.4 30 4-33 690-719 (1189)
388 TIGR01914 cas_Csa4 CRISPR-asso 58.5 58 0.0013 24.6 6.3 65 49-118 288-352 (354)
389 COG0457 NrfG FOG: TPR repeat [ 58.4 50 0.0011 21.6 16.0 155 5-159 94-265 (291)
390 PF13646 HEAT_2: HEAT repeats; 57.7 33 0.00073 19.4 7.2 67 29-100 5-72 (88)
391 COG3898 Uncharacterized membra 57.2 93 0.002 24.4 14.0 97 8-106 190-297 (531)
392 PRK11906 transcriptional regul 56.8 99 0.0021 24.6 13.0 148 7-157 252-434 (458)
393 PHA02875 ankyrin repeat protei 56.5 90 0.0019 24.0 8.2 12 154-165 219-230 (413)
394 KOG2908 26S proteasome regulat 56.2 89 0.0019 23.9 6.9 79 11-89 80-174 (380)
395 KOG4234 TPR repeat-containing 55.5 71 0.0015 22.6 7.1 78 82-159 105-197 (271)
396 PF09868 DUF2095: Uncharacteri 55.3 50 0.0011 20.7 4.8 25 43-67 67-91 (128)
397 KOG1258 mRNA processing protei 55.1 1.2E+02 0.0026 24.9 10.5 121 36-159 44-180 (577)
398 PRK08691 DNA polymerase III su 54.5 1.3E+02 0.0029 25.4 12.0 99 54-165 181-280 (709)
399 PRK07632 ribonucleotide-diphos 54.2 1.1E+02 0.0025 25.8 8.0 34 136-169 123-156 (699)
400 PF07064 RIC1: RIC1; InterPro 54.0 83 0.0018 22.9 9.4 86 12-102 159-250 (258)
401 cd08332 CARD_CASP2 Caspase act 53.6 45 0.00098 19.7 4.7 17 86-102 48-64 (90)
402 KOG1586 Protein required for f 53.5 72 0.0016 23.1 5.8 82 46-127 23-113 (288)
403 PF11817 Foie-gras_1: Foie gra 53.5 29 0.00064 24.8 4.2 77 22-98 161-244 (247)
404 KOG1920 IkappaB kinase complex 53.2 1.3E+02 0.0027 27.2 8.1 19 136-154 1032-1050(1265)
405 PF09868 DUF2095: Uncharacteri 52.8 56 0.0012 20.5 4.7 37 77-114 66-102 (128)
406 KOG3364 Membrane protein invol 52.7 56 0.0012 21.4 4.8 62 42-103 37-102 (149)
407 PLN03025 replication factor C 52.3 96 0.0021 23.1 10.0 33 133-166 228-260 (319)
408 cd08332 CARD_CASP2 Caspase act 52.3 32 0.0007 20.4 3.6 59 26-88 23-81 (90)
409 PF14669 Asp_Glu_race_2: Putat 52.2 21 0.00045 24.8 3.0 53 10-62 136-206 (233)
410 KOG2610 Uncharacterized conser 52.0 1.1E+02 0.0023 23.6 8.1 82 16-97 185-272 (491)
411 COG4003 Uncharacterized protei 51.8 35 0.00076 19.9 3.4 26 135-160 36-61 (98)
412 smart00386 HAT HAT (Half-A-TPR 51.7 22 0.00047 15.5 3.7 27 87-114 2-28 (33)
413 COG0735 Fur Fe2+/Zn2+ uptake r 51.4 66 0.0014 21.0 6.4 62 25-86 8-69 (145)
414 PF02607 B12-binding_2: B12 bi 51.4 43 0.00093 18.8 4.3 35 140-174 11-45 (79)
415 PF09797 NatB_MDM20: N-acetylt 51.3 65 0.0014 24.5 6.0 38 37-74 217-254 (365)
416 PF05944 Phage_term_smal: Phag 49.9 68 0.0015 20.7 5.7 49 109-161 31-79 (132)
417 PF04090 RNA_pol_I_TF: RNA pol 49.8 86 0.0019 21.8 10.4 121 38-159 42-168 (199)
418 KOG0037 Ca2+-binding protein, 49.5 91 0.002 22.0 8.8 106 36-157 92-203 (221)
419 cd08789 CARD_IPS-1_RIG-I Caspa 48.9 53 0.0012 19.2 4.3 62 26-92 21-82 (84)
420 PRK11906 transcriptional regul 48.4 1.4E+02 0.003 23.8 8.3 98 22-121 320-422 (458)
421 COG2976 Uncharacterized protei 48.3 92 0.002 21.7 7.1 56 12-67 132-189 (207)
422 KOG2297 Predicted translation 48.2 1.2E+02 0.0026 23.0 8.0 22 128-149 319-340 (412)
423 cd00280 TRFH Telomeric Repeat 47.7 92 0.002 21.5 7.8 26 134-159 115-140 (200)
424 PRK09857 putative transposase; 47.5 1.1E+02 0.0025 22.6 6.8 66 40-106 209-274 (292)
425 KOG0687 26S proteasome regulat 47.3 1.3E+02 0.0027 23.0 7.4 22 11-32 109-130 (393)
426 PF09613 HrpB1_HrpK: Bacterial 47.2 85 0.0018 21.0 12.4 101 47-159 20-122 (160)
427 PF09477 Type_III_YscG: Bacter 46.1 72 0.0016 19.9 7.2 78 20-103 20-100 (116)
428 PF08631 SPO22: Meiosis protei 46.0 1.2E+02 0.0025 22.2 14.9 85 38-124 85-172 (278)
429 PRK14951 DNA polymerase III su 45.5 1.8E+02 0.0039 24.3 9.9 32 132-164 253-284 (618)
430 PF08314 Sec39: Secretory path 44.7 1.9E+02 0.0042 24.4 12.3 153 6-159 432-625 (715)
431 KOG0991 Replication factor C, 44.6 1.2E+02 0.0026 22.1 10.0 58 26-85 228-285 (333)
432 PF12862 Apc5: Anaphase-promot 44.6 66 0.0014 19.0 5.6 53 48-100 9-69 (94)
433 COG1466 HolA DNA polymerase II 44.4 1.4E+02 0.0029 22.5 10.4 26 139-164 217-242 (334)
434 KOG2297 Predicted translation 44.0 1.4E+02 0.0031 22.6 8.4 21 107-127 321-341 (412)
435 KOG4334 Uncharacterized conser 43.9 24 0.00052 28.0 2.6 94 22-121 463-574 (650)
436 PF12926 MOZART2: Mitotic-spin 43.8 69 0.0015 19.0 7.4 43 58-100 29-71 (88)
437 smart00777 Mad3_BUB1_I Mad3/BU 43.5 86 0.0019 20.0 7.7 58 36-96 65-123 (125)
438 PRK07764 DNA polymerase III su 42.6 2.3E+02 0.005 24.7 10.6 29 134-163 252-280 (824)
439 PF04124 Dor1: Dor1-like famil 42.0 52 0.0011 24.8 4.1 35 135-169 111-146 (338)
440 smart00804 TAP_C C-terminal do 41.5 40 0.00088 18.5 2.6 20 52-71 40-59 (63)
441 PRK06645 DNA polymerase III su 41.5 1.9E+02 0.0042 23.4 10.3 33 132-165 260-292 (507)
442 COG1747 Uncharacterized N-term 41.4 2E+02 0.0043 23.6 11.2 86 36-126 65-150 (711)
443 PF14840 DNA_pol3_delt_C: Proc 41.4 36 0.00078 21.6 2.8 28 49-76 9-36 (125)
444 KOG0276 Vesicle coat complex C 41.3 2.1E+02 0.0046 23.9 7.4 97 14-127 645-741 (794)
445 PF13934 ELYS: Nuclear pore co 41.2 1.3E+02 0.0028 21.3 10.0 134 2-144 22-186 (226)
446 PF01347 Vitellogenin_N: Lipop 41.1 2E+02 0.0044 23.6 14.3 112 8-121 348-470 (618)
447 TIGR03581 EF_0839 conserved hy 40.9 1.3E+02 0.0028 21.4 5.5 30 22-51 137-177 (236)
448 PF15297 CKAP2_C: Cytoskeleton 40.7 83 0.0018 24.0 4.8 43 133-175 143-185 (353)
449 cd08812 CARD_RIG-I_like Caspas 40.0 41 0.00089 19.8 2.7 45 43-91 40-85 (88)
450 PF12816 Vps8: Golgi CORVET co 40.0 74 0.0016 22.0 4.3 68 33-105 18-85 (196)
451 PF14518 Haem_oxygenas_2: Iron 39.8 16 0.00035 22.0 1.0 55 37-95 47-101 (106)
452 COG3294 HD supefamily hydrolas 39.7 26 0.00056 24.9 2.0 20 147-166 67-86 (269)
453 COG2909 MalT ATP-dependent tra 39.7 2.6E+02 0.0056 24.4 9.5 142 18-159 470-647 (894)
454 COG3682 Predicted transcriptio 39.6 95 0.0021 19.8 4.3 36 88-124 20-55 (123)
455 cd08323 CARD_APAF1 Caspase act 39.6 81 0.0017 18.6 4.8 16 87-102 43-58 (86)
456 COG3107 LppC Putative lipoprot 39.3 2.2E+02 0.0047 23.4 7.5 130 25-155 47-184 (604)
457 cd04400 RhoGAP_fBEM3 RhoGAP_fB 39.3 1.2E+02 0.0027 20.6 5.5 74 52-125 77-152 (190)
458 PF04034 DUF367: Domain of unk 39.2 1E+02 0.0022 19.7 6.3 50 10-59 70-121 (127)
459 PF10255 Paf67: RNA polymerase 38.8 1.2E+02 0.0026 23.7 5.6 57 8-64 124-191 (404)
460 TIGR01529 argR_whole arginine 38.0 90 0.002 20.4 4.3 38 43-80 6-43 (146)
461 PF11838 ERAP1_C: ERAP1-like C 37.8 1.6E+02 0.0035 21.6 8.8 96 2-97 164-262 (324)
462 TIGR03362 VI_chp_7 type VI sec 37.2 1.3E+02 0.0028 22.5 5.5 58 45-102 221-280 (301)
463 KOG1130 Predicted G-alpha GTPa 36.6 55 0.0012 25.8 3.5 51 45-96 25-79 (639)
464 KOG2396 HAT (Half-A-TPR) repea 36.3 2.4E+02 0.0051 23.0 10.2 100 22-124 444-547 (568)
465 PF07575 Nucleopor_Nup85: Nup8 36.2 30 0.00065 28.2 2.2 62 4-65 403-466 (566)
466 PRK07914 hypothetical protein; 36.2 1.8E+02 0.004 21.7 10.5 25 141-165 206-230 (320)
467 KOG2034 Vacuolar sorting prote 36.0 3E+02 0.0065 24.1 11.0 83 76-158 594-695 (911)
468 PF07720 TPR_3: Tetratricopept 36.0 55 0.0012 15.6 3.1 13 47-59 11-23 (36)
469 PF09986 DUF2225: Uncharacteri 35.9 1.4E+02 0.0031 20.9 5.3 62 43-104 124-197 (214)
470 KOG1166 Mitotic checkpoint ser 35.8 1.8E+02 0.0038 25.8 6.6 75 47-121 88-163 (974)
471 PRK14962 DNA polymerase III su 35.8 2.3E+02 0.005 22.7 7.9 24 50-73 256-279 (472)
472 KOG1130 Predicted G-alpha GTPa 35.7 46 0.001 26.2 3.0 46 14-59 25-77 (639)
473 KOG4234 TPR repeat-containing 35.4 1.6E+02 0.0035 20.9 5.9 21 81-101 177-197 (271)
474 PF14561 TPR_20: Tetratricopep 35.2 98 0.0021 18.2 5.5 32 36-67 21-52 (90)
475 PF02184 HAT: HAT (Half-A-TPR) 35.2 55 0.0012 15.3 2.7 23 145-169 2-24 (32)
476 KOG0890 Protein kinase of the 35.0 4.1E+02 0.009 26.3 8.9 84 13-102 1390-1479(2382)
477 PHA02537 M terminase endonucle 34.8 1.7E+02 0.0037 20.9 9.1 122 48-176 94-228 (230)
478 PF06368 Met_asp_mut_E: Methyl 34.6 19 0.00042 28.0 0.9 48 50-100 28-75 (441)
479 PRK14963 DNA polymerase III su 34.6 2.5E+02 0.0054 22.8 11.1 32 132-164 244-275 (504)
480 PF04762 IKI3: IKI3 family; I 34.6 2.7E+02 0.0058 24.7 7.6 97 2-98 808-927 (928)
481 KOG1585 Protein required for f 34.1 1.9E+02 0.0041 21.2 9.5 165 9-175 34-238 (308)
482 smart00164 TBC Domain in Tre-2 33.4 1.5E+02 0.0033 19.9 5.2 71 52-126 108-186 (199)
483 TIGR02878 spore_ypjB sporulati 33.2 1.8E+02 0.004 20.8 7.1 15 48-62 16-30 (233)
484 PF12816 Vps8: Golgi CORVET co 32.7 85 0.0018 21.7 3.7 73 3-76 19-91 (196)
485 KOG0890 Protein kinase of the 32.6 5.1E+02 0.011 25.8 11.1 118 14-136 1428-1552(2382)
486 PRK09462 fur ferric uptake reg 32.3 1.4E+02 0.0031 19.3 4.7 51 38-88 17-68 (148)
487 PRK06585 holA DNA polymerase I 32.0 2.2E+02 0.0048 21.3 10.4 24 141-164 222-245 (343)
488 PF04097 Nic96: Nup93/Nic96; 31.9 3E+02 0.0066 22.9 10.2 146 11-158 263-455 (613)
489 KOG4077 Cytochrome c oxidase, 31.7 1.5E+02 0.0032 19.2 4.7 29 129-157 83-111 (149)
490 TIGR03236 dnd_assoc_1 dnd syst 31.6 2.1E+02 0.0045 22.1 5.7 45 82-126 306-350 (363)
491 cd08780 Death_TRADD Death Doma 31.4 1.1E+02 0.0023 18.3 3.4 47 46-94 41-87 (90)
492 COG5159 RPN6 26S proteasome re 31.4 2.3E+02 0.005 21.4 6.0 51 77-127 8-65 (421)
493 cd08785 CARD_CARD9-like Caspas 31.0 1.2E+02 0.0025 17.9 3.9 52 57-112 19-73 (86)
494 PF04910 Tcf25: Transcriptiona 31.0 1.3E+02 0.0029 23.0 4.8 35 82-116 113-147 (360)
495 PF07864 DUF1651: Protein of u 30.6 51 0.0011 18.7 2.0 21 145-165 51-71 (75)
496 PF02840 Prp18: Prp18 domain; 30.1 1.4E+02 0.003 19.6 4.1 47 56-102 43-89 (144)
497 PF09797 NatB_MDM20: N-acetylt 30.0 2.5E+02 0.0054 21.4 6.2 66 40-106 183-251 (365)
498 KOG1147 Glutamyl-tRNA syntheta 29.9 1.3E+02 0.0027 24.8 4.5 77 59-158 255-331 (712)
499 PF07443 HARP: HepA-related pr 29.9 17 0.00036 19.5 -0.1 33 143-175 5-37 (55)
500 TIGR01529 argR_whole arginine 29.7 1.3E+02 0.0029 19.6 4.1 39 78-116 6-44 (146)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.9e-39 Score=255.28 Aligned_cols=176 Identities=32% Similarity=0.549 Sum_probs=172.3
Q ss_pred CcchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR 82 (178)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 82 (178)
.||..+|++||++|++.|++++|.++|++|+++|+.+||+||.+|++.|+.++|.++|++|.+.|+.||..||++++++|
T Consensus 256 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~ 335 (697)
T PLN03081 256 VGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF 335 (697)
T ss_pred CccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 47888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc--------cchhhHHHHHHHHHhcCChhHHHHHHH
Q 036068 83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFS 154 (178)
Q Consensus 83 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--------~~~~~~~~li~~~~~~~~~~~a~~~~~ 154 (178)
++.|++++|.++++.|.+.|+.|+..++++|+++|+++|++++|. ||..+||+||.+|++.|+.++|+++|+
T Consensus 336 ~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~ 415 (697)
T PLN03081 336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFE 415 (697)
T ss_pred HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 899999999999999999999999999
Q ss_pred HHHHcCCCCChhHHHHHHhhhhcC
Q 036068 155 QMLRASIKPDEVAYVGVLSACTHN 178 (178)
Q Consensus 155 ~m~~~g~~p~~~t~~~li~a~~~~ 178 (178)
+|.+.|+.||..||+.+|.+|+++
T Consensus 416 ~M~~~g~~Pd~~T~~~ll~a~~~~ 439 (697)
T PLN03081 416 RMIAEGVAPNHVTFLAVLSACRYS 439 (697)
T ss_pred HHHHhCCCCCHHHHHHHHHHHhcC
Confidence 999999999999999999999874
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-36 Score=247.96 Aligned_cols=175 Identities=21% Similarity=0.281 Sum_probs=146.4
Q ss_pred CcchhHHHHHHHHHHhcCChhHHHHHhccCCC----CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHH
Q 036068 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPE----RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSI 78 (178)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 78 (178)
+||..+|+++|.+|++.|++++|.++|++|.+ |+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 576 ~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsL 655 (1060)
T PLN03218 576 DPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSAL 655 (1060)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 47777777777777777777777777777764 46678888888888888888888888888888888888888888
Q ss_pred HHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc------------cchhhHHHHHHHHHhcCCh
Q 036068 79 LTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ------------KDKFSWTTMIVGLAISGNG 146 (178)
Q Consensus 79 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~------------~~~~~~~~li~~~~~~~~~ 146 (178)
|.+|++.|++++|.++++.|.+.|+.|+..+|+.+|.+|++.|++++|. ||..+||.||.+|++.|++
T Consensus 656 I~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~ 735 (1060)
T PLN03218 656 VDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQL 735 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 8888888888888888888888888888888888888888888888876 7889999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCChhHHHHHHhhhhc
Q 036068 147 DKALDMFSQMLRASIKPDEVAYVGVLSACTH 177 (178)
Q Consensus 147 ~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~ 177 (178)
++|.++|++|.+.|+.||..||+.||.+|++
T Consensus 736 eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 736 PKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9999999999988999999999999988875
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.3e-36 Score=246.01 Aligned_cols=175 Identities=22% Similarity=0.348 Sum_probs=131.2
Q ss_pred CcchhHHHHHHHHHHhcCChhHHHHHhccCC----CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHH
Q 036068 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMP----ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSI 78 (178)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 78 (178)
+||..+|+++|.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 469 ~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsL 548 (1060)
T PLN03218 469 KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548 (1060)
T ss_pred CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4677777777777777777777777777776 367777777777777777777777777777777777777777777
Q ss_pred HHHhccccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHhcCChhhhc------------cchhhHHHHHHHHHhcC
Q 036068 79 LTARANLRALDLGEWIKTYIDK--NKVKNDIFAGNALIDMYCICADVEKAQ------------KDKFSWTTMIVGLAISG 144 (178)
Q Consensus 79 l~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~------------~~~~~~~~li~~~~~~~ 144 (178)
|.+|++.|++++|.+++++|.+ .|+.|+..+|+.+|.+|++.|++++|. |+..+||.+|.+|++.|
T Consensus 549 I~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G 628 (1060)
T PLN03218 549 ISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKG 628 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Confidence 7777777777777777777765 466777777777777777777777765 56677777777777777
Q ss_pred ChhHHHHHHHHHHHcCCCCChhHHHHHHhhhhc
Q 036068 145 NGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177 (178)
Q Consensus 145 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~ 177 (178)
++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 629 ~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k 661 (1060)
T PLN03218 629 DWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH 661 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 777777777777777777777777777777765
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.9e-36 Score=243.91 Aligned_cols=175 Identities=37% Similarity=0.561 Sum_probs=171.4
Q ss_pred CcchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR 82 (178)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 82 (178)
+||+.+||++|.+|++.|++++|.++|++|+++|..+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|
T Consensus 219 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~ 298 (857)
T PLN03077 219 ELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC 298 (857)
T ss_pred CcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc--------cchhhHHHHHHHHHhcCChhHHHHHHH
Q 036068 83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFS 154 (178)
Q Consensus 83 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--------~~~~~~~~li~~~~~~~~~~~a~~~~~ 154 (178)
++.|+.+.+.+++..|.+.|+.||..+||.++.+|++.|++++|. ||..+||.+|.+|++.|++++|+++|+
T Consensus 299 ~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~ 378 (857)
T PLN03077 299 ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYA 378 (857)
T ss_pred HhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 899999999999999999999999999
Q ss_pred HHHHcCCCCChhHHHHHHhhhhc
Q 036068 155 QMLRASIKPDEVAYVGVLSACTH 177 (178)
Q Consensus 155 ~m~~~g~~p~~~t~~~li~a~~~ 177 (178)
+|.+.|+.||..||+.+|.+|++
T Consensus 379 ~M~~~g~~Pd~~t~~~ll~a~~~ 401 (857)
T PLN03077 379 LMEQDNVSPDEITIASVLSACAC 401 (857)
T ss_pred HHHHhCCCCCceeHHHHHHHHhc
Confidence 99999999999999999999975
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=237.19 Aligned_cols=175 Identities=29% Similarity=0.517 Sum_probs=171.8
Q ss_pred CcchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR 82 (178)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 82 (178)
.||+.+|+.++.+|++.|++++|.++|++|++||..+||++|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|
T Consensus 155 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~ 234 (697)
T PLN03081 155 EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS 234 (697)
T ss_pred CcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc--------cchhhHHHHHHHHHhcCChhHHHHHHH
Q 036068 83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFS 154 (178)
Q Consensus 83 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--------~~~~~~~~li~~~~~~~~~~~a~~~~~ 154 (178)
++.|+.+.+.+++..+.+.|+.++..+++.||++|+++|++++|. +|+.+||.||.+|++.|++++|+++|+
T Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 235 AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 799999999999999999999999999
Q ss_pred HHHHcCCCCChhHHHHHHhhhhc
Q 036068 155 QMLRASIKPDEVAYVGVLSACTH 177 (178)
Q Consensus 155 ~m~~~g~~p~~~t~~~li~a~~~ 177 (178)
+|.+.|+.||..||+.+|.+|++
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~ 337 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSR 337 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999986
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.5e-34 Score=235.29 Aligned_cols=176 Identities=30% Similarity=0.494 Sum_probs=171.4
Q ss_pred CCcchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81 (178)
Q Consensus 2 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 81 (178)
+.+++..+|++|.+|++.|+++.|.++|++|++||..+||++|.+|++.|++++|.++|++|...|+.||..||++++++
T Consensus 117 ~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~ 196 (857)
T PLN03077 117 PSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT 196 (857)
T ss_pred CCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc--------cchhhHHHHHHHHHhcCChhHHHHHH
Q 036068 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMF 153 (178)
Q Consensus 82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--------~~~~~~~~li~~~~~~~~~~~a~~~~ 153 (178)
|++.++++.+.+++..|.+.|+.|++.++|.+|.+|++.|++++|. +|..+||++|.+|++.|++++|+++|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf 276 (857)
T PLN03077 197 CGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELF 276 (857)
T ss_pred hCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999997 79999999999999999999999999
Q ss_pred HHHHHcCCCCChhHHHHHHhhhhc
Q 036068 154 SQMLRASIKPDEVAYVGVLSACTH 177 (178)
Q Consensus 154 ~~m~~~g~~p~~~t~~~li~a~~~ 177 (178)
++|.+.|+.||..||+.+|.+|++
T Consensus 277 ~~M~~~g~~Pd~~ty~~ll~a~~~ 300 (857)
T PLN03077 277 FTMRELSVDPDLMTITSVISACEL 300 (857)
T ss_pred HHHHHcCCCCChhHHHHHHHHHHh
Confidence 999999999999999999999875
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.73 E-value=1e-17 Score=89.51 Aligned_cols=50 Identities=28% Similarity=0.515 Sum_probs=48.8
Q ss_pred cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhhhc
Q 036068 128 KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177 (178)
Q Consensus 128 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~ 177 (178)
||+.+||++|.+|++.|++++|+++|++|++.|+.||..||+.+|++|+|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999986
No 8
>PF13041 PPR_2: PPR repeat family
Probab=99.69 E-value=1.3e-16 Score=85.14 Aligned_cols=50 Identities=32% Similarity=0.602 Sum_probs=43.8
Q ss_pred CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068 35 RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84 (178)
Q Consensus 35 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 84 (178)
||+.+||++|++|++.|++++|+++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68888888888888888888888888888888888888888888888875
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.61 E-value=8.7e-14 Score=104.74 Aligned_cols=167 Identities=9% Similarity=0.022 Sum_probs=92.2
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCCC--C------hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHH
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPER--D------YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIV 76 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 76 (178)
+..+++.++..+.+.|++++|.+.++.+.+. + ...+..+...+.+.|++++|...|+++.+.. +.+...+.
T Consensus 140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 218 (389)
T PRK11788 140 AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASI 218 (389)
T ss_pred hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHH
Confidence 3444555555555555555555555544321 0 1123334444555555555555555555432 12234455
Q ss_pred HHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cchhhHHHHHHHHHhcCCh
Q 036068 77 SILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KDKFSWTTMIVGLAISGNG 146 (178)
Q Consensus 77 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~~~~~~~li~~~~~~~~~ 146 (178)
.+...+.+.|++++|.++++.+.+.+......+++.+...|.+.|++++|. |+...+..+...+.+.|++
T Consensus 219 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~ 298 (389)
T PRK11788 219 LLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGP 298 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCH
Confidence 555666666666666666666665443333445566666666666666665 4555556666667777777
Q ss_pred hHHHHHHHHHHHcCCCCChhHHHHHHhh
Q 036068 147 DKALDMFSQMLRASIKPDEVAYVGVLSA 174 (178)
Q Consensus 147 ~~a~~~~~~m~~~g~~p~~~t~~~li~a 174 (178)
++|..+++++.+. .|+..++..++..
T Consensus 299 ~~A~~~l~~~l~~--~P~~~~~~~l~~~ 324 (389)
T PRK11788 299 EAAQALLREQLRR--HPSLRGFHRLLDY 324 (389)
T ss_pred HHHHHHHHHHHHh--CcCHHHHHHHHHH
Confidence 7777777766654 4666666655544
No 10
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=5.8e-14 Score=103.11 Aligned_cols=169 Identities=13% Similarity=0.153 Sum_probs=136.3
Q ss_pred CcchhHHHHHHHHHHhcCChhHHHHHhccCCC----CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHH
Q 036068 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPE----RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSI 78 (178)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 78 (178)
+.+..+|.++|.++++--..+.|.+++++-+. -+..+||.+|.+-.-.. .-+++.+|....++||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHH
Confidence 46778999999999999999999999999875 38889999998765433 36788999999999999999999
Q ss_pred HHHhccccchhh----HHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc---------------------------
Q 036068 79 LTARANLRALDL----GEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------------------------- 127 (178)
Q Consensus 79 l~~~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--------------------------- 127 (178)
+++..+.|+++. |.+++.+|++-|++|+..+|..+|.-+++-++..+..
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998764 6778899999999999999999999999998886543
Q ss_pred ------------------------------------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHH
Q 036068 128 ------------------------------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171 (178)
Q Consensus 128 ------------------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 171 (178)
...+-|..+....|+....+.-...|+.|.-+-+.|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 12333455556666666666666777777766677777777777
Q ss_pred Hhhh
Q 036068 172 LSAC 175 (178)
Q Consensus 172 i~a~ 175 (178)
++|.
T Consensus 440 lrA~ 443 (625)
T KOG4422|consen 440 LRAL 443 (625)
T ss_pred HHHH
Confidence 7764
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.53 E-value=1.5e-12 Score=98.10 Aligned_cols=165 Identities=12% Similarity=0.098 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc----HHHHHHHHH
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD----EFTIVSILT 80 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~ 80 (178)
.+..+...+.+.|++++|..+|+++.+ .+..+++.+...+.+.|++++|.+.++++.+.+..+. ...+..+..
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 455555666666666666666665543 2445566666666666666666666666655432221 112334455
Q ss_pred HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cc--hhhHHHHHHHHHhcCChhH
Q 036068 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KD--KFSWTTMIVGLAISGNGDK 148 (178)
Q Consensus 81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~--~~~~~~li~~~~~~~~~~~ 148 (178)
.+.+.|++++|...++.+.+... .+...+..+...|.+.|++++|. |+ ..+++.+...|.+.|++++
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 189 QALARGDLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence 55566666666666666655432 23445555556666666666665 22 2345666667777777777
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHhhh
Q 036068 149 ALDMFSQMLRASIKPDEVAYVGVLSAC 175 (178)
Q Consensus 149 a~~~~~~m~~~g~~p~~~t~~~li~a~ 175 (178)
|.+.++++.+. .|+...+..+...+
T Consensus 268 A~~~l~~~~~~--~p~~~~~~~la~~~ 292 (389)
T PRK11788 268 GLEFLRRALEE--YPGADLLLALAQLL 292 (389)
T ss_pred HHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 77777776654 35555555444444
No 12
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=5.4e-12 Score=92.95 Aligned_cols=127 Identities=16% Similarity=0.219 Sum_probs=104.0
Q ss_pred HhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccch
Q 036068 28 CFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDI 107 (178)
Q Consensus 28 ~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 107 (178)
++-+..-++..+|.++|.++|+-...+.|.+++++-.+...+.+..+||.+|.+-.- ....+++.+|.+..+.|+.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCch
Confidence 444555568899999999999999999999999999888888899999999887543 2337899999999999999
Q ss_pred HHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhhhc
Q 036068 108 FAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177 (178)
Q Consensus 108 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~ 177 (178)
.|+|+++++..+.|+++.+. ..|++++.+|++-|+.|+..+|..+|.-+.+
T Consensus 274 ~TfNalL~c~akfg~F~~ar-------------------~aalqil~EmKeiGVePsLsSyh~iik~f~r 324 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDAR-------------------KAALQILGEMKEIGVEPSLSSYHLIIKNFKR 324 (625)
T ss_pred HhHHHHHHHHHHhcchHHHH-------------------HHHHHHHHHHHHhCCCcchhhHHHHHHHhcc
Confidence 99999999988888888652 3567788888888888888888888776543
No 13
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.39 E-value=6.5e-11 Score=96.99 Aligned_cols=169 Identities=12% Similarity=0.049 Sum_probs=115.0
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCC--CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR 82 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 82 (178)
+...+..+...+.+.|++++|.+.|+++.+ |+..++..+...+.+.|++++|.+.++++.+.. +.+...+..+...|
T Consensus 702 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~ 780 (899)
T TIGR02917 702 AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELY 780 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 334455555555556666666666555432 344555556666666666666666666666543 34566677777777
Q ss_pred ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHH
Q 036068 83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALD 151 (178)
Q Consensus 83 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~ 151 (178)
.+.|++++|.++|+.+.+..+ .++.+++.+...+.+.|+ .+|. .+...+..+...+...|++++|.+
T Consensus 781 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 858 (899)
T TIGR02917 781 LAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALP 858 (899)
T ss_pred HHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 777888888888877777653 467777777778888777 5555 355667788888899999999999
Q ss_pred HHHHHHHcCCCCChhHHHHHHhhhhc
Q 036068 152 MFSQMLRASIKPDEVAYVGVLSACTH 177 (178)
Q Consensus 152 ~~~~m~~~g~~p~~~t~~~li~a~~~ 177 (178)
+|+++.+.+- .+..++..+..++.+
T Consensus 859 ~~~~a~~~~~-~~~~~~~~l~~~~~~ 883 (899)
T TIGR02917 859 LLRKAVNIAP-EAAAIRYHLALALLA 883 (899)
T ss_pred HHHHHHhhCC-CChHHHHHHHHHHHH
Confidence 9999998653 377787777776653
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.37 E-value=1.2e-10 Score=95.41 Aligned_cols=168 Identities=10% Similarity=0.062 Sum_probs=90.5
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCC------------
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI------------ 68 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------------ 68 (178)
.+...|..+...+.+.|++++|.+.|+++.+ .+...+..+...+.+.|++++|...|+++.+..-
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 678 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQL 678 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3445566666666666666666666655432 2344455555555555555555555555444321
Q ss_pred ---------------------CCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 69 ---------------------MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 69 ---------------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
+.+...+..+...+.+.|++++|...++.+.+.+. +..++..+...+.+.|+.++|.
T Consensus 679 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 756 (899)
T TIGR02917 679 LLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNTAEAV 756 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHHHH
Confidence 22334444444555555555555555555554432 2244445555555566655554
Q ss_pred -----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhh
Q 036068 128 -----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174 (178)
Q Consensus 128 -----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a 174 (178)
.+...++.+...|...|++++|.+.|+++.+.+ +++...+..+...
T Consensus 757 ~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~ 813 (899)
T TIGR02917 757 KTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWL 813 (899)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345566666667777777777777777776642 3344555554443
No 15
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.25 E-value=3.2e-09 Score=73.71 Aligned_cols=165 Identities=12% Similarity=0.056 Sum_probs=132.7
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 81 (178)
....+..+...+...|++++|.+.+++..+ | +...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 356788889999999999999999997653 3 56788888899999999999999999988765 3355677788888
Q ss_pred hccccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHhcCChhhhc----------c-chhhHHHHHHHHHhcCChhHH
Q 036068 82 RANLRALDLGEWIKTYIDKNKV-KNDIFAGNALIDMYCICADVEKAQ----------K-DKFSWTTMIVGLAISGNGDKA 149 (178)
Q Consensus 82 ~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~----------~-~~~~~~~li~~~~~~~~~~~a 149 (178)
+...|++++|.+.++...+... ......+..+...+.+.|++++|. | +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999887532 223556777888899999999987 2 456788888999999999999
Q ss_pred HHHHHHHHHcCCCCChhHHHHH
Q 036068 150 LDMFSQMLRASIKPDEVAYVGV 171 (178)
Q Consensus 150 ~~~~~~m~~~g~~p~~~t~~~l 171 (178)
.+.+++..+. .+.+...+..+
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~ 209 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLG 209 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHH
Confidence 9999999876 23334444333
No 16
>PF12854 PPR_1: PPR repeat
Probab=99.10 E-value=1.2e-10 Score=56.43 Aligned_cols=31 Identities=32% Similarity=0.651 Sum_probs=22.0
Q ss_pred CcchhHHHHHHHHHHhcCChhHHHHHhccCC
Q 036068 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMP 33 (178)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 33 (178)
+||..+||+||++|++.|++++|.++|++|+
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4777777777777777777777777777764
No 17
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.10 E-value=8.6e-10 Score=79.75 Aligned_cols=166 Identities=16% Similarity=0.166 Sum_probs=90.8
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCC--CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCC-CCCcHHHHHHHHHH
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMP--ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN-IMGDEFTIVSILTA 81 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~ 81 (178)
++..+..++.. ...+++++|.+++++.- .++...+...+..+.+.++++++.+++++..... ...+...|..+...
T Consensus 77 ~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~ 155 (280)
T PF13429_consen 77 NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEI 155 (280)
T ss_dssp ------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHH
T ss_pred ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 34456666666 68888888888887663 3566777888888888889999888888876432 34566777788888
Q ss_pred hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHH
Q 036068 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKAL 150 (178)
Q Consensus 82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~ 150 (178)
+.+.|+.++|...++...+..+. ++.+.+.++..+...|+.+++. .|...|..+..++...|+.++|+
T Consensus 156 ~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al 234 (280)
T PF13429_consen 156 YEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEAL 234 (280)
T ss_dssp HHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccc
Confidence 88889999999999888887643 5777888888888888888744 46777888888888889999999
Q ss_pred HHHHHHHHcCCCC-ChhHHHHHHhh
Q 036068 151 DMFSQMLRASIKP-DEVAYVGVLSA 174 (178)
Q Consensus 151 ~~~~~m~~~g~~p-~~~t~~~li~a 174 (178)
.+|++..+. .| |......+-++
T Consensus 235 ~~~~~~~~~--~p~d~~~~~~~a~~ 257 (280)
T PF13429_consen 235 EYLEKALKL--NPDDPLWLLAYADA 257 (280)
T ss_dssp HHHHHHHHH--STT-HHHHHHHHHH
T ss_pred ccccccccc--cccccccccccccc
Confidence 999888764 35 44444444443
No 18
>PF12854 PPR_1: PPR repeat
Probab=99.08 E-value=1.3e-10 Score=56.31 Aligned_cols=32 Identities=9% Similarity=-0.020 Sum_probs=20.3
Q ss_pred CCCCcHHHHHHHHHHhccccchhhHHHHHHHH
Q 036068 67 NIMGDEFTIVSILTARANLRALDLGEWIKTYI 98 (178)
Q Consensus 67 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 98 (178)
|+.||..||+++|++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666655
No 19
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.07 E-value=4e-09 Score=76.28 Aligned_cols=152 Identities=18% Similarity=0.162 Sum_probs=97.6
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCC-----CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCC-cHHHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMP-----ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG-DEFTIVS 77 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ 77 (178)
++...+..++..+.+.++++++.+++++.. ..+...|..+...+.+.|+.++|.+.+++..+.. | |......
T Consensus 108 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--P~~~~~~~~ 185 (280)
T PF13429_consen 108 GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD--PDDPDARNA 185 (280)
T ss_dssp ----------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHH
T ss_pred cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHH
Confidence 455667788888889999999988888754 2477788888888899999999999999988874 4 4677888
Q ss_pred HHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCCh
Q 036068 78 ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNG 146 (178)
Q Consensus 78 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~ 146 (178)
++..+...|+.+++.++++...+.. +.++..+..+..+|...|+.++|. .|......+...+...|+.
T Consensus 186 l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~ 264 (280)
T PF13429_consen 186 LAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRK 264 (280)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccc
Confidence 8888999999999888888887775 556777888899999999999987 3677777888899999999
Q ss_pred hHHHHHHHHHHH
Q 036068 147 DKALDMFSQMLR 158 (178)
Q Consensus 147 ~~a~~~~~~m~~ 158 (178)
++|.++.++..+
T Consensus 265 ~~A~~~~~~~~~ 276 (280)
T PF13429_consen 265 DEALRLRRQALR 276 (280)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 999998887654
No 20
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.01 E-value=9.2e-08 Score=66.37 Aligned_cols=155 Identities=12% Similarity=0.068 Sum_probs=126.6
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCC-CcHHHHHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM-GDEFTIVSIL 79 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll 79 (178)
.+...+..+...+...|++++|.+.+++..+ .+...+..+...+...|++++|.+.+++..+.... .....+..+.
T Consensus 63 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 142 (234)
T TIGR02521 63 DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAG 142 (234)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 3466788899999999999999999997653 35667888888999999999999999998775322 2345667778
Q ss_pred HHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhH
Q 036068 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDK 148 (178)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~ 148 (178)
.++.+.|++++|.+.+....+.... +...+..+...+...|++++|. .+...+..+...+...|+.++
T Consensus 143 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (234)
T TIGR02521 143 LCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAA 221 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHH
Confidence 8899999999999999998887543 5677888899999999999986 245666677888889999999
Q ss_pred HHHHHHHHHHc
Q 036068 149 ALDMFSQMLRA 159 (178)
Q Consensus 149 a~~~~~~m~~~ 159 (178)
|..+.+.+.+.
T Consensus 222 a~~~~~~~~~~ 232 (234)
T TIGR02521 222 AQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhh
Confidence 99998887653
No 21
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=99.00 E-value=1e-09 Score=53.56 Aligned_cols=35 Identities=37% Similarity=0.714 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 036068 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165 (178)
Q Consensus 131 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 165 (178)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.99 E-value=1.1e-07 Score=76.54 Aligned_cols=118 Identities=6% Similarity=-0.093 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCC--CC-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR 82 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 82 (178)
...+..+...+...|++++|...++.+. .| +...+..+ ..+...|++++|...++++....-.++...+..+..++
T Consensus 144 ~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l 222 (656)
T PRK15174 144 SQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTL 222 (656)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHH
Confidence 3344455555555555555555554332 11 11122111 22444455555555555444332112222333333444
Q ss_pred ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhh
Q 036068 83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK 125 (178)
Q Consensus 83 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 125 (178)
.+.|++++|...++...+... .+...+..+-..|...|++++
T Consensus 223 ~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~e 264 (656)
T PRK15174 223 CAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSRE 264 (656)
T ss_pred HHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchh
Confidence 455555555555555444332 134444444455555555443
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.98 E-value=7.2e-08 Score=77.11 Aligned_cols=153 Identities=10% Similarity=-0.108 Sum_probs=129.4
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 81 (178)
+...|+.+...+...|++++|...|++..+ | +...|..+...+...|++++|...|++..+.. +-+...|..+...
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~ 408 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQL 408 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345678888888899999999999998754 4 45678888888999999999999999987764 3357788888999
Q ss_pred hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------c-chhhHHHHHHHHHhcCChhHHH
Q 036068 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------K-DKFSWTTMIVGLAISGNGDKAL 150 (178)
Q Consensus 82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~-~~~~~~~li~~~~~~~~~~~a~ 150 (178)
+...|++++|...|+...+..+. +...+..+...+.+.|++++|. | +...|+.+...+...|++++|.
T Consensus 409 ~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~ 487 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAI 487 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH
Confidence 99999999999999999887643 5677788888899999999987 3 5778889999999999999999
Q ss_pred HHHHHHHHc
Q 036068 151 DMFSQMLRA 159 (178)
Q Consensus 151 ~~~~~m~~~ 159 (178)
+.|++..+.
T Consensus 488 ~~~~~Al~l 496 (615)
T TIGR00990 488 EKFDTAIEL 496 (615)
T ss_pred HHHHHHHhc
Confidence 999998864
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.96 E-value=1.7e-07 Score=75.45 Aligned_cols=143 Identities=13% Similarity=0.007 Sum_probs=84.9
Q ss_pred HHHhcCChhHHHHHhccCCCC----ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhh
Q 036068 15 RYINRGQVDIARQCFDQMPER----DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDL 90 (178)
Q Consensus 15 ~~~~~~~~~~a~~~~~~m~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 90 (178)
.+.+.|++++|...++.+.+. +...+..+...+.+.|++++|...+++..+.. +.+...+..+-..+.+.|++++
T Consensus 186 ~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~e 264 (656)
T PRK15174 186 SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSRE 264 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchh
Confidence 366677777777777765431 23333444556666777777777777766553 2244555556666666666664
Q ss_pred ----HHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------c-chhhHHHHHHHHHhcCChhHHHHHHHH
Q 036068 91 ----GEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------K-DKFSWTTMIVGLAISGNGDKALDMFSQ 155 (178)
Q Consensus 91 ----a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~ 155 (178)
|...++...+..+. +...+..+...+.+.|++++|. | +...+..+...+.+.|++++|...|++
T Consensus 265 A~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 265 AKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred hHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 56666666655432 4556666666666666666665 2 334455555666666666666666666
Q ss_pred HHHc
Q 036068 156 MLRA 159 (178)
Q Consensus 156 m~~~ 159 (178)
+.+.
T Consensus 344 al~~ 347 (656)
T PRK15174 344 LARE 347 (656)
T ss_pred HHHh
Confidence 6543
No 25
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.94 E-value=2.2e-07 Score=74.31 Aligned_cols=152 Identities=13% Similarity=-0.002 Sum_probs=98.7
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR 82 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 82 (178)
...|..+...+...|++++|...|++..+ .+...|..+...+...|++++|...|++..+.. +.+...+..+..++
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~ 443 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHH
Confidence 44667777777778888888887776542 256677777777777788888888887776654 22455566666777
Q ss_pred ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cch-h-------hHHHHHHHHHhcC
Q 036068 83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KDK-F-------SWTTMIVGLAISG 144 (178)
Q Consensus 83 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~~-~-------~~~~li~~~~~~~ 144 (178)
.+.|++++|...++...+.. +.++.+++.+-..+...|++++|. |+. . .++.....+...|
T Consensus 444 ~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 77777777777777776653 234666777777777777777775 110 1 1111222233457
Q ss_pred ChhHHHHHHHHHHHc
Q 036068 145 NGDKALDMFSQMLRA 159 (178)
Q Consensus 145 ~~~~a~~~~~~m~~~ 159 (178)
++++|.+++++.++.
T Consensus 523 ~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 523 DFIEAENLCEKALII 537 (615)
T ss_pred hHHHHHHHHHHHHhc
Confidence 777777777776553
No 26
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.93 E-value=2.5e-09 Score=51.84 Aligned_cols=34 Identities=26% Similarity=0.554 Sum_probs=32.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 036068 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKP 163 (178)
Q Consensus 130 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 163 (178)
+.+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999988
No 27
>PRK12370 invasion protein regulator; Provisional
Probab=98.89 E-value=2.5e-07 Score=73.09 Aligned_cols=120 Identities=8% Similarity=-0.046 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcH-HHHHHHHHH
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDE-FTIVSILTA 81 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~ 81 (178)
...|..+-..+...|++++|...|++..+ | +...+..+-..+...|++++|...+++..+.. |+. ..+..+...
T Consensus 338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~ 415 (553)
T PRK12370 338 PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWI 415 (553)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHH
Confidence 33444444444555555555555554332 2 23344444445555555555555555544432 221 111222223
Q ss_pred hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
+...|++++|...++...+...+-++..+..+-..|...|+.++|.
T Consensus 416 ~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~ 461 (553)
T PRK12370 416 TYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELAR 461 (553)
T ss_pred HHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHH
Confidence 3334455555555554444332222333444444455555555554
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.88 E-value=2.2e-07 Score=77.33 Aligned_cols=105 Identities=8% Similarity=-0.139 Sum_probs=47.1
Q ss_pred CChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc---
Q 036068 51 NRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--- 127 (178)
Q Consensus 51 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--- 127 (178)
|++++|.+.+++..+. .|+...+..+..++.+.|++++|...++...+..+. +...++.+-..+...|+.++|.
T Consensus 590 Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 590 GQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred CCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4444444444444332 233444444444444444444444444444444321 2334444444444444444443
Q ss_pred -------c-chhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 128 -------K-DKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 128 -------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
| +...+..+...+...|++++|...|++..+
T Consensus 667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 667 ERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1 344444555555555555555555555443
No 29
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.86 E-value=1.7e-08 Score=80.47 Aligned_cols=157 Identities=15% Similarity=0.120 Sum_probs=112.5
Q ss_pred CcchhHHHHHHHHHHhcCChhHHHHHhccCCCC----ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHH
Q 036068 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPER----DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSI 78 (178)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 78 (178)
.|+-.||.++|..|+..|+++.|- +|..|+-+ +...|+.++.+....++.+.+. .|.+.||+.+
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 477789999999999999999988 88877643 6678888988888888877665 6889999999
Q ss_pred HHHhccccchhh---HHHHHHHHH----HhCc-----------------ccchHHHHHHHHHHHhcCChhhhc-------
Q 036068 79 LTARANLRALDL---GEWIKTYID----KNKV-----------------KNDIFAGNALIDMYCICADVEKAQ------- 127 (178)
Q Consensus 79 l~~~~~~~~~~~---a~~~~~~m~----~~~~-----------------~~~~~~~~~ll~~~~~~~~~~~a~------- 127 (178)
+.+|.+.||... +++.+..+. ..|+ -|+.. | .+....-.|.++.+.
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~--n-~illlv~eglwaqllkll~~~P 166 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE--N-AILLLVLEGLWAQLLKLLAKVP 166 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH--H-HHHHHHHHHHHHHHHHHHhhCC
Confidence 999999998654 333222221 1221 11111 0 011111111111111
Q ss_pred -----------------------------------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHH
Q 036068 128 -----------------------------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172 (178)
Q Consensus 128 -----------------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 172 (178)
++..+|.+++..-...|+.+.|..++.+|.+.|++.+.+-|..||
T Consensus 167 vsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl 246 (1088)
T KOG4318|consen 167 VSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLL 246 (1088)
T ss_pred cccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhh
Confidence 689999999999999999999999999999999998888887777
Q ss_pred hh
Q 036068 173 SA 174 (178)
Q Consensus 173 ~a 174 (178)
-+
T Consensus 247 ~g 248 (1088)
T KOG4318|consen 247 LG 248 (1088)
T ss_pred hc
Confidence 54
No 30
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.84 E-value=5.3e-09 Score=50.91 Aligned_cols=33 Identities=39% Similarity=0.635 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc
Q 036068 39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71 (178)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 71 (178)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888876
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.81 E-value=9.9e-07 Score=67.02 Aligned_cols=158 Identities=18% Similarity=0.159 Sum_probs=91.0
Q ss_pred HHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCC-------------------
Q 036068 13 VSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG------------------- 70 (178)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~------------------- 70 (178)
...+...|++++|...++++.+ | +......+...|.+.|++++|.+++.++.+.+..+
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666665543 2 45555566666666666666666666655443221
Q ss_pred ----------------------cHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-
Q 036068 71 ----------------------DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ- 127 (178)
Q Consensus 71 ----------------------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~- 127 (178)
+......+..++.+.|+.++|..++....+.. +++. -.++.+....++.+++.
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~--l~~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDER--LVLLIPRLKTNNPEQLEK 315 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHH--HHHHHhhccCCChHHHHH
Confidence 11122233444445555555555555554432 2221 11222223334444443
Q ss_pred ---------c-chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhhh
Q 036068 128 ---------K-DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176 (178)
Q Consensus 128 ---------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~ 176 (178)
| |.....++-..+.+.+++++|.+.|++..+. .|+..++..+-.++.
T Consensus 316 ~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~ 372 (398)
T PRK10747 316 VLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALD 372 (398)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHH
Confidence 3 5556778889999999999999999999875 699888777666553
No 32
>PRK12370 invasion protein regulator; Provisional
Probab=98.81 E-value=8.9e-07 Score=70.03 Aligned_cols=148 Identities=9% Similarity=-0.073 Sum_probs=112.9
Q ss_pred CChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHH
Q 036068 20 GQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKT 96 (178)
Q Consensus 20 ~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 96 (178)
+++++|...+++..+ | +...+..+-..+...|++++|...|++..+.+ +.+...+..+-.++...|++++|...++
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 457889999988764 3 77788888888889999999999999998875 3346678888889999999999999999
Q ss_pred HHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------c-chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 036068 97 YIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------K-DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 164 (178)
Q Consensus 97 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 164 (178)
...+..+.. +..+..+...+...|++++|. | +...+..+...+...|+.++|...+.++... .|+
T Consensus 397 ~Al~l~P~~-~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~ 473 (553)
T PRK12370 397 ECLKLDPTR-AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EIT 473 (553)
T ss_pred HHHhcCCCC-hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cch
Confidence 998876543 333344455567788888875 2 2334667778888999999999999997654 455
Q ss_pred hhHHHHH
Q 036068 165 EVAYVGV 171 (178)
Q Consensus 165 ~~t~~~l 171 (178)
..+....
T Consensus 474 ~~~~~~~ 480 (553)
T PRK12370 474 GLIAVNL 480 (553)
T ss_pred hHHHHHH
Confidence 4444433
No 33
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.80 E-value=1e-08 Score=49.63 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCC
Q 036068 38 VLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG 70 (178)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 70 (178)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 567777777777777777777777777777766
No 34
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=1.3e-07 Score=73.28 Aligned_cols=162 Identities=15% Similarity=0.115 Sum_probs=132.0
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHH---H
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIV---S 77 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~---~ 77 (178)
-.+.+|..+-.+|+-+++.+.|+..|++..+ | ...+|+.+-+-+....++|+|...|+.-+.. |...|+ -
T Consensus 419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----~~rhYnAwYG 494 (638)
T KOG1126|consen 419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV----DPRHYNAWYG 494 (638)
T ss_pred CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC----CchhhHHHHh
Confidence 4678999999999999999999999998875 3 6678999989999999999999999886554 444555 4
Q ss_pred HHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCCh
Q 036068 78 ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNG 146 (178)
Q Consensus 78 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~ 146 (178)
+-..|.+.++++.|+-.|+...+.++. +......+...+-+.|+.++|+ .|+.+--.-...+...++.
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRY 573 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcch
Confidence 556789999999999999999887754 5666777777888999999987 4666666667777888999
Q ss_pred hHHHHHHHHHHHcCCCCChhHHHHHH
Q 036068 147 DKALDMFSQMLRASIKPDEVAYVGVL 172 (178)
Q Consensus 147 ~~a~~~~~~m~~~g~~p~~~t~~~li 172 (178)
++|++.++++++. .|+..+...++
T Consensus 574 ~eal~~LEeLk~~--vP~es~v~~ll 597 (638)
T KOG1126|consen 574 VEALQELEELKEL--VPQESSVFALL 597 (638)
T ss_pred HHHHHHHHHHHHh--CcchHHHHHHH
Confidence 9999999999874 67776655554
No 35
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.77 E-value=2.2e-06 Score=71.57 Aligned_cols=157 Identities=13% Similarity=-0.001 Sum_probs=111.9
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC--CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 81 (178)
|+......+...+.+.|++++|...|+++.. ++...+..+...+.+.|+.++|.+.+++..+.+ +.+...+..+...
T Consensus 507 Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~ 585 (987)
T PRK09782 507 PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQ 585 (987)
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHH
Confidence 4433333334444678888888888886653 344455666677788888888888888887764 2233333334444
Q ss_pred hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------c-chhhHHHHHHHHHhcCChhHHH
Q 036068 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------K-DKFSWTTMIVGLAISGNGDKAL 150 (178)
Q Consensus 82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~-~~~~~~~li~~~~~~~~~~~a~ 150 (178)
..+.|++++|...++...+..+ +...+..+-..+.+.|+.++|. | +...++.+...+...|++++|.
T Consensus 586 l~~~Gr~~eAl~~~~~AL~l~P--~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLNIAP--SANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 5566899999999988887654 5777888888899999999887 3 5667777778888899999999
Q ss_pred HHHHHHHHcCCCCCh
Q 036068 151 DMFSQMLRASIKPDE 165 (178)
Q Consensus 151 ~~~~~m~~~g~~p~~ 165 (178)
+.|++..+. .|+.
T Consensus 664 ~~l~~AL~l--~P~~ 676 (987)
T PRK09782 664 EMLERAHKG--LPDD 676 (987)
T ss_pred HHHHHHHHh--CCCC
Confidence 999988874 4654
No 36
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.76 E-value=1.6e-07 Score=57.37 Aligned_cols=88 Identities=11% Similarity=0.146 Sum_probs=65.2
Q ss_pred HHHHHHhccccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHH
Q 036068 76 VSILTARANLRALDLGEWIKTYIDKNKV-KNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFS 154 (178)
Q Consensus 76 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~ 154 (178)
..-|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++...=.. .-.+++-+.+.+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~---------------~ie~kl~~LLtvYq 93 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSE---------------DIENKLTNLLTVYQ 93 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccch---------------hHHHHHHHHHHHHH
Confidence 3445555555888888888888888888 7888888888877766542211 11234447888999
Q ss_pred HHHHcCCCCChhHHHHHHhhhhcC
Q 036068 155 QMLRASIKPDEVAYVGVLSACTHN 178 (178)
Q Consensus 155 ~m~~~g~~p~~~t~~~li~a~~~~ 178 (178)
.|+..+++|+..||+.++.++.++
T Consensus 94 DiL~~~lKP~~etYnivl~~Llkg 117 (120)
T PF08579_consen 94 DILSNKLKPNDETYNIVLGSLLKG 117 (120)
T ss_pred HHHHhccCCcHHHHHHHHHHHHHh
Confidence 999999999999999999987653
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.76 E-value=1.2e-06 Score=66.73 Aligned_cols=164 Identities=13% Similarity=0.049 Sum_probs=88.4
Q ss_pred HHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCC------------------
Q 036068 12 IVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG------------------ 70 (178)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~------------------ 70 (178)
....+...|+++.|.+.++++.+ | +......+...+.+.|++++|.+.+.++.+.++.+
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 35556666777777666666653 2 55566666667777777777766666666543221
Q ss_pred -----------------------cHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHh--cCChhh
Q 036068 71 -----------------------DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI--CADVEK 125 (178)
Q Consensus 71 -----------------------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~~~~~ 125 (178)
+...+..+...+.+.|+.++|.++++...+..+......+. ++..+.. .++.+.
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEK 317 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCCChHH
Confidence 22222233334444455555555555555543322111111 2222221 222222
Q ss_pred hc----------cc-h--hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhhh
Q 036068 126 AQ----------KD-K--FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176 (178)
Q Consensus 126 a~----------~~-~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~ 176 (178)
+. |+ . ....++-..+.+.|++++|.+.|++.......|+...+..+-..+.
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~ 381 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFD 381 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHH
Confidence 22 33 3 4455777788888888888888885444344688877776655443
No 38
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=8.1e-07 Score=66.84 Aligned_cols=155 Identities=19% Similarity=0.222 Sum_probs=101.5
Q ss_pred cCChhHHHHHhccCCCCChhHHHHHHH---HHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHH
Q 036068 19 RGQVDIARQCFDQMPERDYVLWTAMID---GYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIK 95 (178)
Q Consensus 19 ~~~~~~a~~~~~~m~~~~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 95 (178)
.|++++|.+++++....|...-..|.. .+...|+.++|+++|-++..- +.-++.....+.+.|-...+..+|.+++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 677888888888776655444333322 345567778887777665432 1224455555555565555666666555
Q ss_pred HHHHHhCcccchHHHHHHHHHHHhcCChhhhc--------------------------------------------cchh
Q 036068 96 TYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------------------------------------------KDKF 131 (178)
Q Consensus 96 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--------------------------------------------~~~~ 131 (178)
.+.... ++.|+.+.+.|-+.|-+.|+-..|. |+..
T Consensus 582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence 443322 3445666666666666666665554 8999
Q ss_pred hHHHHHHHHH-hcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhhh
Q 036068 132 SWTTMIVGLA-ISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176 (178)
Q Consensus 132 ~~~~li~~~~-~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~ 176 (178)
-|..||..|. +.|++.+|+++|++..+ .++-|......|++.|.
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~ 705 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAG 705 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhc
Confidence 9999996665 57999999999999876 57778888888887664
No 39
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.73 E-value=2e-08 Score=47.51 Aligned_cols=31 Identities=26% Similarity=0.531 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 036068 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASI 161 (178)
Q Consensus 131 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 161 (178)
++||.+|.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999875
No 40
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.73 E-value=3e-07 Score=56.18 Aligned_cols=81 Identities=15% Similarity=0.051 Sum_probs=69.1
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHhHhCCC-CCcHHHHHHHHHHhcccc--------chhhHHHHHHHHHHhCcccchHHH
Q 036068 40 WTAMIDGYLRVNRFREALTLFQEMQTSNI-MGDEFTIVSILTARANLR--------ALDLGEWIKTYIDKNKVKNDIFAG 110 (178)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~m~~~~~~~~~~~~ 110 (178)
-..-|..+...+++.....+|+.+++.|+ .|+..+|+.++++.++.. ++-+...+|+.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34466667777999999999999999999 999999999999987653 234667788999999999999999
Q ss_pred HHHHHHHHhc
Q 036068 111 NALIDMYCIC 120 (178)
Q Consensus 111 ~~ll~~~~~~ 120 (178)
+.++..+.+.
T Consensus 108 nivl~~Llkg 117 (120)
T PF08579_consen 108 NIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 41
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.70 E-value=5.2e-06 Score=60.65 Aligned_cols=159 Identities=9% Similarity=-0.023 Sum_probs=82.8
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 81 (178)
++..|+.+-..+...|++++|.+.|++..+ | +...|..+...+...|++++|.+.|++..+.. |+..........
T Consensus 97 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l 174 (296)
T PRK11189 97 MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYL 174 (296)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 345555555666666666666665555432 2 34455555555555666666666666655432 322211112222
Q ss_pred hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhh--c---------------cchhhHHHHHHHHHhcC
Q 036068 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA--Q---------------KDKFSWTTMIVGLAISG 144 (178)
Q Consensus 82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a--~---------------~~~~~~~~li~~~~~~~ 144 (178)
....+++++|...++...... .++...+ .+.. ...|+...+ . .....|..+-..+.+.|
T Consensus 175 ~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g 250 (296)
T PRK11189 175 AESKLDPKQAKENLKQRYEKL-DKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLG 250 (296)
T ss_pred HHccCCHHHHHHHHHHHHhhC-CccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCC
Confidence 233445666666664433221 1221111 1221 122332211 1 13357888889999999
Q ss_pred ChhHHHHHHHHHHHcCCCCChhHHHH
Q 036068 145 NGDKALDMFSQMLRASIKPDEVAYVG 170 (178)
Q Consensus 145 ~~~~a~~~~~~m~~~g~~p~~~t~~~ 170 (178)
++++|...|++..+.+ .||..-+..
T Consensus 251 ~~~~A~~~~~~Al~~~-~~~~~e~~~ 275 (296)
T PRK11189 251 DLDEAAALFKLALANN-VYNFVEHRY 275 (296)
T ss_pred CHHHHHHHHHHHHHhC-CchHHHHHH
Confidence 9999999999999764 345544433
No 42
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.68 E-value=2.8e-07 Score=73.79 Aligned_cols=162 Identities=9% Similarity=0.033 Sum_probs=104.6
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhH---HHHHHHHhH----hCCC----------
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFRE---ALTLFQEMQ----TSNI---------- 68 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~m~----~~~~---------- 68 (178)
-.+++.++.+..++++.+.+. +|...+|..|+.+|...||... +.+.+..+. ..|+
T Consensus 59 e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k 131 (1088)
T KOG4318|consen 59 EGVFRGLVASHKEANDAENPK-------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMK 131 (1088)
T ss_pred chhHHHHHhcccccccccCCC-------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhh
Confidence 346788888888888877765 7899999999999999998654 333222211 1222
Q ss_pred -------CCcHHH----------HHHHHHHhcc------cc-----------chhhHHHHHHHHHHhCcccchHHHHHHH
Q 036068 69 -------MGDEFT----------IVSILTARAN------LR-----------ALDLGEWIKTYIDKNKVKNDIFAGNALI 114 (178)
Q Consensus 69 -------~~~~~~----------~~~ll~~~~~------~~-----------~~~~a~~~~~~m~~~~~~~~~~~~~~ll 114 (178)
-||..+ |..+++...+ .+ +....+++.+...+..--|++.++.+++
T Consensus 132 ~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l 211 (1088)
T KOG4318|consen 132 IHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVL 211 (1088)
T ss_pred cccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHH
Confidence 233222 1111111100 00 0111222222222222248999999999
Q ss_pred HHHHhcCChhhhc------------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhhhc
Q 036068 115 DMYCICADVEKAQ------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177 (178)
Q Consensus 115 ~~~~~~~~~~~a~------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~ 177 (178)
..-...|+.+.|. -+.+-|-.|+.+ .++...+..+.+-|.+.|+.|+++|+.--+-.+.+
T Consensus 212 ~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 212 KRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred HHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 9999999999987 245555566655 88888899999999999999999999877766554
No 43
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.63 E-value=2e-06 Score=62.46 Aligned_cols=144 Identities=16% Similarity=0.094 Sum_probs=109.0
Q ss_pred HHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh----ccc
Q 036068 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR----ANL 85 (178)
Q Consensus 10 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~----~~~ 85 (178)
-.....+...|++++|++++++- .+.......+..|.+.++++.|.+.++.|.+.+ .| .+...+..++ ...
T Consensus 106 ~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 106 LLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCc
Confidence 33345566789999999999876 567788889999999999999999999998763 33 4444454444 334
Q ss_pred cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCCh-hHHHHHH
Q 036068 86 RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNG-DKALDMF 153 (178)
Q Consensus 86 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~-~~a~~~~ 153 (178)
+.+.+|..+|+++.+. +.+++.+.+.+.-++...|++++|. .+..+.-.+|......|+. +.+.+++
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 5799999999998765 5678899999999999999999998 3566666777777788887 7788899
Q ss_pred HHHHHc
Q 036068 154 SQMLRA 159 (178)
Q Consensus 154 ~~m~~~ 159 (178)
.++...
T Consensus 260 ~qL~~~ 265 (290)
T PF04733_consen 260 SQLKQS 265 (290)
T ss_dssp HHCHHH
T ss_pred HHHHHh
Confidence 988864
No 44
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.63 E-value=5.5e-06 Score=70.87 Aligned_cols=150 Identities=14% Similarity=0.144 Sum_probs=120.6
Q ss_pred HHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhh
Q 036068 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDL 90 (178)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 90 (178)
.....+...|++++|.++++.-+ .+...+..+-..+.+.|+.++|.+.|++..+.. +.+...+..+...+...|++++
T Consensus 578 ~~a~~l~~~G~~~eA~~~l~~~p-~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~e 655 (1157)
T PRK11447 578 ETANRLRDSGKEAEAEALLRQQP-PSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAA 655 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 45677889999999999999432 356677788899999999999999999998874 3467888999999999999999
Q ss_pred HHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cc-h------hhHHHHHHHHHhcCChhHHHHHH
Q 036068 91 GEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KD-K------FSWTTMIVGLAISGNGDKALDMF 153 (178)
Q Consensus 91 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~-~------~~~~~li~~~~~~~~~~~a~~~~ 153 (178)
|.+.++.+.+... .+...+..+...+.+.|++++|. ++ . ..+..+...+...|++++|.+.|
T Consensus 656 A~~~l~~ll~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y 734 (1157)
T PRK11447 656 ARAQLAKLPATAN-DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETY 734 (1157)
T ss_pred HHHHHHHHhccCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999998877543 34566777788899999999987 11 1 34555677888999999999999
Q ss_pred HHHHH-cCCCC
Q 036068 154 SQMLR-ASIKP 163 (178)
Q Consensus 154 ~~m~~-~g~~p 163 (178)
++.+. .|+.|
T Consensus 735 ~~Al~~~~~~~ 745 (1157)
T PRK11447 735 KDAMVASGITP 745 (1157)
T ss_pred HHHHhhcCCCC
Confidence 99875 34543
No 45
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.60 E-value=9.5e-06 Score=66.63 Aligned_cols=159 Identities=12% Similarity=-0.041 Sum_probs=116.2
Q ss_pred HHHHhcCChhHHHHHhccCCC--CCh-hHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhh
Q 036068 14 SRYINRGQVDIARQCFDQMPE--RDY-VLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDL 90 (178)
Q Consensus 14 ~~~~~~~~~~~a~~~~~~m~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 90 (178)
-..++.|+++.|.+.|++..+ |+. ....-++..+...|+.++|+..+++..... .........+...+...|++++
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 345689999999999999875 432 123388888889999999999999987221 2234444455678899999999
Q ss_pred HHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 036068 91 GEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS 160 (178)
Q Consensus 91 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 160 (178)
|.++++.+.+..+. ++..+..+...|...++.++|. |+...+-.++..+...++..+|++.++++.+.
T Consensus 121 Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~- 198 (822)
T PRK14574 121 ALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL- 198 (822)
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh-
Confidence 99999999998755 4777788899999999999998 55555544444444466666699999999986
Q ss_pred CCCC-hhHHHHHHhhhh
Q 036068 161 IKPD-EVAYVGVLSACT 176 (178)
Q Consensus 161 ~~p~-~~t~~~li~a~~ 176 (178)
.|+ ...+..++.+.+
T Consensus 199 -~P~n~e~~~~~~~~l~ 214 (822)
T PRK14574 199 -APTSEEVLKNHLEILQ 214 (822)
T ss_pred -CCCCHHHHHHHHHHHH
Confidence 465 444444444443
No 46
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.58 E-value=1.5e-05 Score=58.84 Aligned_cols=171 Identities=16% Similarity=0.169 Sum_probs=108.0
Q ss_pred CcchhHHHHHHHHHHhcCChhHHHHHhccCC---CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcH-------
Q 036068 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMP---ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDE------- 72 (178)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~------- 72 (178)
.++..++-+..+.....|+++.|.+-+++.. ..++........+|.+.|++....+++.+|.+.|+--+.
T Consensus 150 ~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~ 229 (400)
T COG3071 150 DDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQ 229 (400)
T ss_pred CchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHH
Confidence 4556666677777777777777777666544 347777888888888888888888888888776654332
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-------------------------
Q 036068 73 FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ------------------------- 127 (178)
Q Consensus 73 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~------------------------- 127 (178)
.+|..+++=....+..+.-...++..-.. ...++..--.++.-+..+|+.++|.
T Consensus 230 ~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~ 308 (400)
T COG3071 230 QAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPG 308 (400)
T ss_pred HHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCC
Confidence 34555555443333333333333332221 1223334444444445555555544
Q ss_pred -----------------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhhh
Q 036068 128 -----------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176 (178)
Q Consensus 128 -----------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~ 176 (178)
.+.-.+.+|-..|.+.+.|.+|.+.|+...+ ..|+.++|..+-+++.
T Consensus 309 d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~ 372 (400)
T COG3071 309 DPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALD 372 (400)
T ss_pred CchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHH
Confidence 2567777888888888888888888886664 4788888888776654
No 47
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.58 E-value=7.9e-08 Score=45.37 Aligned_cols=30 Identities=37% Similarity=0.792 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHhHhCCC
Q 036068 39 LWTAMIDGYLRVNRFREALTLFQEMQTSNI 68 (178)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 68 (178)
+||++|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 566777777777777777777777766653
No 48
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.57 E-value=1e-05 Score=56.95 Aligned_cols=155 Identities=11% Similarity=0.001 Sum_probs=111.6
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC--CC-h---hHHHHHHHHHhhcCChhHHHHHHHHhHhCCCC-CcH-HHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE--RD-Y---VLWTAMIDGYLRVNRFREALTLFQEMQTSNIM-GDE-FTI 75 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~-~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~-~~~ 75 (178)
..+..+-.+...+.+.|++++|...|++..+ |+ . ..+..+..++.+.|++++|...++++.+..-. |.. .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3455677788899999999999999998754 32 2 46677888999999999999999999875421 111 134
Q ss_pred HHHHHHhccc--------cchhhHHHHHHHHHHhCcccchHHHH-----------------HHHHHHHhcCChhhhc---
Q 036068 76 VSILTARANL--------RALDLGEWIKTYIDKNKVKNDIFAGN-----------------ALIDMYCICADVEKAQ--- 127 (178)
Q Consensus 76 ~~ll~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~~~~~-----------------~ll~~~~~~~~~~~a~--- 127 (178)
..+-.++.+. +++++|.+.++.+.+..+.. ...+. .+-..|.+.|++.+|.
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 189 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS-EYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRF 189 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 4444444433 78899999999998775432 22221 3345577788888877
Q ss_pred -------cc----hhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 128 -------KD----KFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 128 -------~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
|+ ...+..+...+...|++++|..+++.+...
T Consensus 190 ~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 190 ETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 32 357778888889999999999988887764
No 49
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.56 E-value=1.8e-05 Score=65.01 Aligned_cols=144 Identities=8% Similarity=0.013 Sum_probs=71.8
Q ss_pred HHHhcCChhHHHHHhccCCCCC---hh-HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCC---cHHHHHHHHHHhccccc
Q 036068 15 RYINRGQVDIARQCFDQMPERD---YV-LWTAMIDGYLRVNRFREALTLFQEMQTSNIMG---DEFTIVSILTARANLRA 87 (178)
Q Consensus 15 ~~~~~~~~~~a~~~~~~m~~~~---~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~~~ 87 (178)
.+...|++++|.+.|+++.+.+ +. .--.+...|...|++++|...|+++....-.. .......+..++.+.++
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 3345566666666666655321 11 11113445566666666666666654432110 11233444445566666
Q ss_pred hhhHHHHHHHHHHhCc-----------ccc---hHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHh
Q 036068 88 LDLGEWIKTYIDKNKV-----------KND---IFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAI 142 (178)
Q Consensus 88 ~~~a~~~~~~m~~~~~-----------~~~---~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~ 142 (178)
+++|.++++.+.+..+ .|+ ...+..+...+...|+.++|. .+...+..+...+..
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 6666666665554421 112 123344455555566666555 234445555555555
Q ss_pred cCChhHHHHHHHHHHH
Q 036068 143 SGNGDKALDMFSQMLR 158 (178)
Q Consensus 143 ~~~~~~a~~~~~~m~~ 158 (178)
.|++++|++.+++.++
T Consensus 406 ~g~~~~A~~~l~~al~ 421 (765)
T PRK10049 406 RGWPRAAENELKKAEV 421 (765)
T ss_pred cCCHHHHHHHHHHHHh
Confidence 5555555555555554
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.54 E-value=1.6e-05 Score=58.73 Aligned_cols=158 Identities=13% Similarity=0.060 Sum_probs=117.6
Q ss_pred CCcchhHHHHHHHHHHhcCChhHHHHHhccCCCC---------------------------------------------C
Q 036068 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPER---------------------------------------------D 36 (178)
Q Consensus 2 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------------------------------------~ 36 (178)
.+.++.+.....++|.+.|++.....+..+|.+. +
T Consensus 183 ~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~ 262 (400)
T COG3071 183 TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRND 262 (400)
T ss_pred CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcC
Confidence 3456667788899999999999999988888631 3
Q ss_pred hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068 37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116 (178)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 116 (178)
+..-..++.-+.++|+.++|.++..+-.+++-.|+ ...+-.+.+.++.+.-.+..+.-.+.. +-++..+.+|=..
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L 337 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRL 337 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHH
Confidence 44555677777788888888888888777766655 222334556666665555555444433 2345788899999
Q ss_pred HHhcCChhhhc----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 036068 117 YCICADVEKAQ----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 164 (178)
Q Consensus 117 ~~~~~~~~~a~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 164 (178)
|.+.+.+.+|. |+..+|+-+-.++.+.|+.++|.+++++-+..-..|+
T Consensus 338 ~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 338 ALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 99999999997 8999999999999999999999999998875444444
No 51
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.52 E-value=3.5e-06 Score=63.45 Aligned_cols=116 Identities=18% Similarity=0.111 Sum_probs=85.3
Q ss_pred HHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchh
Q 036068 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALD 89 (178)
Q Consensus 10 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 89 (178)
..|++.+...++++.|.++|+++.+.++...-.+...+...++-.+|.+++++..... +-+......-.+.|.+.++++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHH
Confidence 4456666677888888888888887766677777777777777788888888877543 335566666666777888888
Q ss_pred hHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 90 LGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 90 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
.|.++.+...+..+ -+-.+|..|...|.+.|+++.|.
T Consensus 252 lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~AL 288 (395)
T PF09295_consen 252 LALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENAL 288 (395)
T ss_pred HHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHH
Confidence 88888888777642 24567888888888888888876
No 52
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.52 E-value=1.1e-06 Score=66.45 Aligned_cols=116 Identities=9% Similarity=0.051 Sum_probs=98.7
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCC-C-----ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHH
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPE-R-----DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSI 78 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 78 (178)
+......+++.+....+++.+..++.+.+. | -..|.+++|+.|.+.|..++++++++.=...|+-||..+++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 344567788888888889999998888774 2 2346679999999999999999999999999999999999999
Q ss_pred HHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhc
Q 036068 79 LTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120 (178)
Q Consensus 79 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 120 (178)
|+.+.+.|++..|.++...|...+.-.++.|+...+.++.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999998888767777777767666665
No 53
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.52 E-value=1.5e-05 Score=68.23 Aligned_cols=88 Identities=10% Similarity=0.039 Sum_probs=68.6
Q ss_pred cHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------c-chhhHHHHHHH
Q 036068 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------K-DKFSWTTMIVG 139 (178)
Q Consensus 71 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~-~~~~~~~li~~ 139 (178)
+...+..+...+.+.|++++|...|+...+..+ .++..+..+...|...|+.++|. | +...+..+...
T Consensus 602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~ 680 (1157)
T PRK11447 602 STRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALA 680 (1157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 444556677777888888888888888887754 35778888888899999998887 2 44556667778
Q ss_pred HHhcCChhHHHHHHHHHHHc
Q 036068 140 LAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 140 ~~~~~~~~~a~~~~~~m~~~ 159 (178)
+...|++++|.++|++++..
T Consensus 681 ~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 681 WAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHhCCCHHHHHHHHHHHhhh
Confidence 88899999999999998864
No 54
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.51 E-value=9.6e-07 Score=60.31 Aligned_cols=102 Identities=15% Similarity=0.149 Sum_probs=74.5
Q ss_pred CCcHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhc
Q 036068 69 MGDEFTIVSILTARAN-----LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAIS 143 (178)
Q Consensus 69 ~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~ 143 (178)
..+..+|..+++.|.+ .|+.+-....+..|.+.|++-|..+|+.|++.+=+ |.+. ....+.++.-.| -
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv----p~n~fQ~~F~hy--p 116 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV----PRNFFQAEFMHY--P 116 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc----cccHHHHHhccC--c
Confidence 4567777777777753 36667777777888888888888888888887665 4333 222233333222 2
Q ss_pred CChhHHHHHHHHHHHcCCCCChhHHHHHHhhhhc
Q 036068 144 GNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177 (178)
Q Consensus 144 ~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~ 177 (178)
.+-+.|++++++|.+.|+.||.+|+..|++.|++
T Consensus 117 ~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 117 RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 4567899999999999999999999999999875
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.47 E-value=6.4e-06 Score=59.44 Aligned_cols=108 Identities=18% Similarity=0.087 Sum_probs=71.0
Q ss_pred cCChhHHHHHhccCCCCChhHHH---HHHHHHhhcCChhHHHHHHHHhHhCCCCCc---HHHHHHHHHHhccccchhhHH
Q 036068 19 RGQVDIARQCFDQMPERDYVLWT---AMIDGYLRVNRFREALTLFQEMQTSNIMGD---EFTIVSILTARANLRALDLGE 92 (178)
Q Consensus 19 ~~~~~~a~~~~~~m~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~ 92 (178)
..+.++|.++|-+|.+-|..||. +|-+.|.+.|++|.|+++-+-+.++---+. ....-.+-+=|...|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 45677888888888765555544 466677778888888888777766411111 122334455567777788888
Q ss_pred HHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 93 WIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 93 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
++|..+.+.+ +--......|+..|-+..+|++|.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAI 161 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAI 161 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHH
Confidence 8888777644 234556677777777777777776
No 56
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.47 E-value=4.5e-06 Score=60.48 Aligned_cols=159 Identities=11% Similarity=-0.038 Sum_probs=116.1
Q ss_pred CcchhHHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHH
Q 036068 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79 (178)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 79 (178)
+|-+.||-.|-+.|-+-.+...|+.+|.+-.+ | |+....-.-+.+...++.++|.+++++..+.. ..++.....+.
T Consensus 253 ~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia 331 (478)
T KOG1129|consen 253 FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIA 331 (478)
T ss_pred CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-Cccceeeeeee
Confidence 45667777778888888888888888877654 3 33333345566677778888888888876654 33555666667
Q ss_pred HHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc--------------------------------
Q 036068 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-------------------------------- 127 (178)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-------------------------------- 127 (178)
..|.-.++++-|..+|.++.+.|.. ++..|+.+--++...++++-+.
T Consensus 332 ~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD 410 (478)
T KOG1129|consen 332 VGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD 410 (478)
T ss_pred eccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc
Confidence 7777788889999999999999875 6777888777777777777665
Q ss_pred ----------------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 036068 128 ----------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165 (178)
Q Consensus 128 ----------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 165 (178)
.+...+|.|...-.+.|++++|..++..... +.|+.
T Consensus 411 ~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s--~~P~m 462 (478)
T KOG1129|consen 411 FNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS--VMPDM 462 (478)
T ss_pred hHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh--hCccc
Confidence 2567788888888889999999998887664 34543
No 57
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.47 E-value=4e-06 Score=63.52 Aligned_cols=112 Identities=13% Similarity=0.036 Sum_probs=95.5
Q ss_pred CCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHhcCChhhhc------------cchh
Q 036068 66 SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN--KVKNDIFAGNALIDMYCICADVEKAQ------------KDKF 131 (178)
Q Consensus 66 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~------------~~~~ 131 (178)
.+...+.....++++.+....+.+.+..++..+... .....+.|.+++|..|.+.|..+.+. ||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 445667788888999999999999999998888765 34445667789999999999988887 8999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhhhc
Q 036068 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177 (178)
Q Consensus 132 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~ 177 (178)
++|.||+.+.+.|++..|.++.-+|...+...+..|+..-+.+|.+
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 9999999999999999999999999988888888888888887753
No 58
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.46 E-value=2.6e-06 Score=58.25 Aligned_cols=103 Identities=11% Similarity=0.104 Sum_probs=86.3
Q ss_pred HHHHHhccC--CCCChhHHHHHHHHHhhc-----CChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcccc----------
Q 036068 24 IARQCFDQM--PERDYVLWTAMIDGYLRV-----NRFREALTLFQEMQTSNIMGDEFTIVSILTARANLR---------- 86 (178)
Q Consensus 24 ~a~~~~~~m--~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---------- 86 (178)
...+.|+.. ..+|-.+|..+++.|.+. |..+-....+++|.+-|+.-|..+|+.||+.+=+..
T Consensus 32 ~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~ 111 (228)
T PF06239_consen 32 PHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAE 111 (228)
T ss_pred chHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence 345566665 567999999999999854 778888889999999999999999999999986532
Q ss_pred ------chhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhh
Q 036068 87 ------ALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126 (178)
Q Consensus 87 ------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 126 (178)
+-+-|.+++++|...|+-||..++..+++.+++.+..-..
T Consensus 112 F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K 157 (228)
T PF06239_consen 112 FMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKK 157 (228)
T ss_pred hccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHH
Confidence 2246899999999999999999999999999998876554
No 59
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.46 E-value=3.6e-05 Score=58.80 Aligned_cols=155 Identities=14% Similarity=-0.022 Sum_probs=112.5
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCC--CCh--hHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068 9 WTAIVSRYINRGQVDIARQCFDQMPE--RDY--VLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84 (178)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~--~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 84 (178)
+-.......+.|+++.|.+.+.+..+ |+. ..--.....+...|+++.|.+.++++.+.+ +-+......+...+.+
T Consensus 121 ~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~ 199 (409)
T TIGR00540 121 LIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIR 199 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 34456777788999999999998643 333 333445778888999999999999999886 3366788899999999
Q ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHH---HhcCChh----hh------cc-----chhhHHHHHHHHHhcCCh
Q 036068 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY---CICADVE----KA------QK-----DKFSWTTMIVGLAISGNG 146 (178)
Q Consensus 85 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~---~~~~~~~----~a------~~-----~~~~~~~li~~~~~~~~~ 146 (178)
.|+++++.+++..+.+.+..++......-...+ ...+..+ .. .| +...+-.+...+...|+.
T Consensus 200 ~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~ 279 (409)
T TIGR00540 200 SGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDH 279 (409)
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCCh
Confidence 999999999999999987643332211111211 2111111 11 13 778888999999999999
Q ss_pred hHHHHHHHHHHHcCCCCChh
Q 036068 147 DKALDMFSQMLRASIKPDEV 166 (178)
Q Consensus 147 ~~a~~~~~~m~~~g~~p~~~ 166 (178)
++|.+++++..+. .||..
T Consensus 280 ~~A~~~l~~~l~~--~pd~~ 297 (409)
T TIGR00540 280 DSAQEIIFDGLKK--LGDDR 297 (409)
T ss_pred HHHHHHHHHHHhh--CCCcc
Confidence 9999999999875 35544
No 60
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.46 E-value=6.5e-05 Score=51.91 Aligned_cols=164 Identities=7% Similarity=-0.077 Sum_probs=128.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 84 (178)
...-|--+|.+.|+...|..-+++..+ | +..+|..+-..|.+.|+.+.|.+-|++-.+.. +-+....|..--.+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 455677789999999999999998875 3 66688889999999999999999999987764 2245667777777899
Q ss_pred ccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHhcCChhhhc----------c-chhhHHHHHHHHHhcCChhHHHHH
Q 036068 85 LRALDLGEWIKTYIDKNKV-KNDIFAGNALIDMYCICADVEKAQ----------K-DKFSWTTMIVGLAISGNGDKALDM 152 (178)
Q Consensus 85 ~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~----------~-~~~~~~~li~~~~~~~~~~~a~~~ 152 (178)
.|++++|.+.|+.....-. ..-..+|..+.-+..+.|+.+.|. | ...+.-.+.....+.|++-.|..+
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 9999999999988877542 223677888888888999998887 2 456667778888888999999988
Q ss_pred HHHHHHcCCCCChhHHHHHHh
Q 036068 153 FSQMLRASIKPDEVAYVGVLS 173 (178)
Q Consensus 153 ~~~m~~~g~~p~~~t~~~li~ 173 (178)
+++....+. ++..+.-..|+
T Consensus 196 ~~~~~~~~~-~~A~sL~L~ir 215 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIR 215 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHH
Confidence 888877654 76666555443
No 61
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.44 E-value=3.9e-05 Score=58.42 Aligned_cols=150 Identities=15% Similarity=0.006 Sum_probs=104.6
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCC--CChhHHH--HHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068 9 WTAIVSRYINRGQVDIARQCFDQMPE--RDYVLWT--AMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84 (178)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 84 (178)
|-.......+.|+++.|.+.+.++.+ |+....- .....+...|++++|...+++..+.. +-+......+...|.+
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~ 199 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIR 199 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 33334455889999999999998875 3433232 33568888999999999999998876 3356778888999999
Q ss_pred ccchhhHHHHHHHHHHhCcccchH-------HHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCCh
Q 036068 85 LRALDLGEWIKTYIDKNKVKNDIF-------AGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNG 146 (178)
Q Consensus 85 ~~~~~~a~~~~~~m~~~~~~~~~~-------~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~ 146 (178)
.|+++++.+++..+.+.+..++.. +|..++....+..+.+... .++.....+...+...|+.
T Consensus 200 ~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~ 279 (398)
T PRK10747 200 TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDH 279 (398)
T ss_pred HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCH
Confidence 999999999999999877553221 2222232222222111111 3666777788888888888
Q ss_pred hHHHHHHHHHHHc
Q 036068 147 DKALDMFSQMLRA 159 (178)
Q Consensus 147 ~~a~~~~~~m~~~ 159 (178)
++|.+++++..+.
T Consensus 280 ~~A~~~L~~~l~~ 292 (398)
T PRK10747 280 DTAQQIILDGLKR 292 (398)
T ss_pred HHHHHHHHHHHhc
Confidence 8888888888774
No 62
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=2.7e-05 Score=59.01 Aligned_cols=136 Identities=15% Similarity=0.068 Sum_probs=113.2
Q ss_pred HHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc-HHHHHHHHHHhccccchhh
Q 036068 15 RYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD-EFTIVSILTARANLRALDL 90 (178)
Q Consensus 15 ~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~ 90 (178)
...+.|+++.|+..++.+.. | |...+......+.+.++.++|.+.++++... .|+ ....-.+-+++.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 34467888888888888753 4 6666777778999999999999999999886 466 5566677889999999999
Q ss_pred HHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 91 GEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 91 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
|..+++...... +.++..|..|-.+|...|+..++ -.+.-.++...|+++.|...+.+..+.
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a------~~A~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEA------LLARAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHH------HHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999988876 45899999999999999998876 455667888999999999999988774
No 63
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.39 E-value=2e-05 Score=61.66 Aligned_cols=153 Identities=16% Similarity=0.115 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 84 (178)
.|+.|..++-..|++.+|...+++... | -....+.|-..|...|.+++|.++|..-.+-. +--...++.|...|-+
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kq 400 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQ 400 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHh
Confidence 355555555555555555555554432 2 23344455555555555555555555544432 1123455556666666
Q ss_pred ccchhhHHHHHHHHHHhCcccc-hHHHHHHHHHHHhcCChhhhc----------cc-hhhHHHHHHHHHhcCChhHHHHH
Q 036068 85 LRALDLGEWIKTYIDKNKVKND-IFAGNALIDMYCICADVEKAQ----------KD-KFSWTTMIVGLAISGNGDKALDM 152 (178)
Q Consensus 85 ~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~----------~~-~~~~~~li~~~~~~~~~~~a~~~ 152 (178)
.|++++|...|++.++- .|+ ...++.+-..|-..|+++.|. |. ....+.|...|-..|++.+|.+-
T Consensus 401 qgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~s 478 (966)
T KOG4626|consen 401 QGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQS 478 (966)
T ss_pred cccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHH
Confidence 66666666666655543 232 344555555555556655554 22 34567788888888889999888
Q ss_pred HHHHHHcCCCCCh
Q 036068 153 FSQMLRASIKPDE 165 (178)
Q Consensus 153 ~~~m~~~g~~p~~ 165 (178)
|++.++ ++||.
T Consensus 479 Y~~aLk--lkPDf 489 (966)
T KOG4626|consen 479 YRTALK--LKPDF 489 (966)
T ss_pred HHHHHc--cCCCC
Confidence 888775 46765
No 64
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.38 E-value=4e-05 Score=63.05 Aligned_cols=146 Identities=12% Similarity=0.010 Sum_probs=116.7
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccc
Q 036068 9 WTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL 85 (178)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 85 (178)
-.-.+......|+.++|+++|.+... .+...+..+...+.+.|++++|.++|++..+.. +.+...+..+..++.+.
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 34567777889999999999998764 355568889999999999999999999987763 33456677888888999
Q ss_pred cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------c-chhhHHHHHHHHHhcCChhHHHHHHH
Q 036068 86 RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------K-DKFSWTTMIVGLAISGNGDKALDMFS 154 (178)
Q Consensus 86 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~ 154 (178)
|++++|...++...+..+ .+.. +..+-..+...|+.++|. | +...+..+...+...|+.++|++.++
T Consensus 97 g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 97 GQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 999999999999988753 3455 888888899999999987 3 45556677778888899999998887
Q ss_pred HHH
Q 036068 155 QML 157 (178)
Q Consensus 155 ~m~ 157 (178)
+..
T Consensus 175 ~~~ 177 (765)
T PRK10049 175 DAN 177 (765)
T ss_pred hCC
Confidence 544
No 65
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.36 E-value=3.4e-05 Score=50.31 Aligned_cols=106 Identities=9% Similarity=-0.051 Sum_probs=71.6
Q ss_pred ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID 115 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 115 (178)
++..+..+-..+...|++++|...|++..... +.+...+..+-.++.+.|++++|...|+...+..+.
T Consensus 23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~----------- 90 (144)
T PRK15359 23 DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS----------- 90 (144)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-----------
Confidence 34345555666777778888888887776654 336667777777777888888888888777765432
Q ss_pred HHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHH
Q 036068 116 MYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168 (178)
Q Consensus 116 ~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 168 (178)
+...+..+..++...|++++|...|++.++. .|+...+
T Consensus 91 -------------~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~~~ 128 (144)
T PRK15359 91 -------------HPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADASW 128 (144)
T ss_pred -------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHH
Confidence 3445666666777777788888888887754 4554333
No 66
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.34 E-value=2.6e-06 Score=66.33 Aligned_cols=150 Identities=12% Similarity=0.042 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHhccCCC--C-----------------------------------ChhHHHHHHHHHhh
Q 036068 7 ISWTAIVSRYINRGQVDIARQCFDQMPE--R-----------------------------------DYVLWTAMIDGYLR 49 (178)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-----------------------------------~~~~~~~li~~~~~ 49 (178)
.+...+-++|...++++++.++|+..++ | .+.+|..+-..|.-
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL 433 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSL 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh
Confidence 4556778899999999999999998863 1 45567777777777
Q ss_pred cCChhHHHHHHHHhHhCCCCC-cHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-
Q 036068 50 VNRFREALTLFQEMQTSNIMG-DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ- 127 (178)
Q Consensus 50 ~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~- 127 (178)
+++.+.|+++|++-.... | .+.+|+.+-.=+....++|.|...|+....... .+-..|--+-..|.|.++++.|+
T Consensus 434 Qkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~-rhYnAwYGlG~vy~Kqek~e~Ae~ 510 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP-RHYNAWYGLGTVYLKQEKLEFAEF 510 (638)
T ss_pred hhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc-hhhHHHHhhhhheeccchhhHHHH
Confidence 777777877777765543 4 556666666666777777777777766554332 23445555666788888888776
Q ss_pred ----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 128 ----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 128 ----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
.+.+..-.+...+-+.|+.|+|+++|++....
T Consensus 511 ~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l 552 (638)
T KOG1126|consen 511 HFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL 552 (638)
T ss_pred HHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc
Confidence 35666666667777888888888888887653
No 67
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.32 E-value=3e-05 Score=60.21 Aligned_cols=152 Identities=11% Similarity=0.082 Sum_probs=112.9
Q ss_pred hHHHHHHHHHHhcCChhHHHHHhccCCC----------CChh-HHHHHHHHHhhcCChhHHHHHHHHhHhC-----CC--
Q 036068 7 ISWTAIVSRYINRGQVDIARQCFDQMPE----------RDYV-LWTAMIDGYLRVNRFREALTLFQEMQTS-----NI-- 68 (178)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~----------~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~-- 68 (178)
.+...+...|...|+++.|..+++...+ +.+. .-+.+-..|...+++++|..+|+++..- |-
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3456699999999999999999987543 2222 2333556888899999999999998542 21
Q ss_pred CCcHHHHHHHHHHhccccchhhHHHHHHHHHH---h--Cc-ccc-hHHHHHHHHHHHhcCChhhhc--------------
Q 036068 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDK---N--KV-KND-IFAGNALIDMYCICADVEKAQ-------------- 127 (178)
Q Consensus 69 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~--~~-~~~-~~~~~~ll~~~~~~~~~~~a~-------------- 127 (178)
+.-+.+++.|-.+|.+.|++++|..+++...+ . |. .|. ...++.+...++..++++.|.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 22245777788889999999999988876543 1 11 122 344666777788889998887
Q ss_pred -c----chhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 128 -K----DKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 128 -~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
+ -..+++.|-..|...|++++|.+++++.+.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~ 395 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ 395 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 1 246788999999999999999999999875
No 68
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.32 E-value=0.00019 Score=49.40 Aligned_cols=149 Identities=9% Similarity=0.038 Sum_probs=99.4
Q ss_pred HHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhH
Q 036068 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLG 91 (178)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 91 (178)
-+-.|...|+++.+..-.+.+..+. ..+...++.+++...+++..+.+ +.+...|..+-..|...|++++|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456788888888655543322221 01122455666766676666554 44667777777778888888888
Q ss_pred HHHHHHHHHhCcccchHHHHHHHHH-HHhcCCh--hhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 036068 92 EWIKTYIDKNKVKNDIFAGNALIDM-YCICADV--EKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQML 157 (178)
Q Consensus 92 ~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~~~~--~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 157 (178)
...++...+.... +...+..+-.. +...|+. ++|. .+...+..+...+.+.|++++|...|++++
T Consensus 93 ~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 93 LLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888877776643 56666666664 3565653 4444 367788888899999999999999999998
Q ss_pred HcCCCCChhHHHHH
Q 036068 158 RASIKPDEVAYVGV 171 (178)
Q Consensus 158 ~~g~~p~~~t~~~l 171 (178)
+. .+|+..-+..+
T Consensus 172 ~l-~~~~~~r~~~i 184 (198)
T PRK10370 172 DL-NSPRVNRTQLV 184 (198)
T ss_pred hh-CCCCccHHHHH
Confidence 84 35666555444
No 69
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.29 E-value=5.2e-05 Score=63.96 Aligned_cols=158 Identities=13% Similarity=0.123 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHhcCChhHHHHHhccCC---------------------------------------CC--ChhHHHHHHH
Q 036068 7 ISWTAIVSRYINRGQVDIARQCFDQMP---------------------------------------ER--DYVLWTAMID 45 (178)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~---------------------------------------~~--~~~~~~~li~ 45 (178)
..|-.-+..+...+++++|.+++++.. +- -...|..|..
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLG 1538 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 346666777777777777776666543 10 1223455566
Q ss_pred HHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHhcCChh
Q 036068 46 GYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVK-NDIFAGNALIDMYCICADVE 124 (178)
Q Consensus 46 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~ 124 (178)
.|.+.+..++|-++|++|.+.= .-....|...+..+.+.++-+.|..++.+..+.=++ ............-++.|+.+
T Consensus 1539 iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch
Confidence 6666666666666666665431 124455555666666666666666666555543221 12334444445555556555
Q ss_pred hhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 036068 125 KAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165 (178)
Q Consensus 125 ~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 165 (178)
.+. .-...|+..|+.-.++|+.+.+..+|++....++.|--
T Consensus 1618 RGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1618 RGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred hhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 532 36778999999999999999999999999998887643
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.29 E-value=4e-05 Score=59.52 Aligned_cols=167 Identities=13% Similarity=0.064 Sum_probs=122.5
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCC----------CChh-HHHHHHHHHhhcCChhHHHHHHHHhHhC---CCCC-
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMPE----------RDYV-LWTAMIDGYLRVNRFREALTLFQEMQTS---NIMG- 70 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~----------~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~- 70 (178)
+.+++.|-..|.+.|++++|...+++..+ +.+. .++.+...+...+++++|..++++..+. -..+
T Consensus 283 a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~ 362 (508)
T KOG1840|consen 283 AATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED 362 (508)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc
Confidence 34688899999999999998877776532 2222 4666777888899999999999875431 1122
Q ss_pred ---cHHHHHHHHHHhccccchhhHHHHHHHHHHhC----c--cc-chHHHHHHHHHHHhcCChhhhc-------------
Q 036068 71 ---DEFTIVSILTARANLRALDLGEWIKTYIDKNK----V--KN-DIFAGNALIDMYCICADVEKAQ------------- 127 (178)
Q Consensus 71 ---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~--~~-~~~~~~~ll~~~~~~~~~~~a~------------- 127 (178)
-..+++.+-..|-+.|++++|+++++..++.. - .+ ....++.+-..|.+.+..++|.
T Consensus 363 ~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~ 442 (508)
T KOG1840|consen 363 NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLC 442 (508)
T ss_pred chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHh
Confidence 24689999999999999999999998776432 2 22 2445677777788888888765
Q ss_pred ----c-chhhHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCCChhHHHHHH
Q 036068 128 ----K-DKFSWTTMIVGLAISGNGDKALDMFSQMLRA------SIKPDEVAYVGVL 172 (178)
Q Consensus 128 ----~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~t~~~li 172 (178)
| ...+|..|...|.+.|++++|.++-+...+. +..|+........
T Consensus 443 g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (508)
T KOG1840|consen 443 GPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRL 498 (508)
T ss_pred CCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhh
Confidence 2 4678999999999999999999998887631 3455555554443
No 71
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.29 E-value=8.8e-06 Score=63.56 Aligned_cols=147 Identities=13% Similarity=0.052 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCC--CC-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc-HHHHHHHHHHhc
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD-EFTIVSILTARA 83 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~ 83 (178)
.|-.|-..|-..+.++.|...+.+.. +| ....+..+-..|-..|+++.|++.|++..+.. |+ ...|+.+..++.
T Consensus 254 AYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALk 331 (966)
T KOG4626|consen 254 AYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALK 331 (966)
T ss_pred HHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHH
Confidence 45555666666666666666665432 22 34445555555555566666666555554432 22 345555555555
Q ss_pred cccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------c-chhhHHHHHHHHHhcCChhHHHHH
Q 036068 84 NLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------K-DKFSWTTMIVGLAISGNGDKALDM 152 (178)
Q Consensus 84 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~-~~~~~~~li~~~~~~~~~~~a~~~ 152 (178)
..|+..+|.+.|.......+. .....+.|-..|...|.+++|. | -...+|.|...|-++|++++|+..
T Consensus 332 d~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~ 410 (966)
T KOG4626|consen 332 DKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMC 410 (966)
T ss_pred hccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHH
Confidence 556666665555555544322 3444555555555555555554 1 133345555555555555555555
Q ss_pred HHHHH
Q 036068 153 FSQML 157 (178)
Q Consensus 153 ~~~m~ 157 (178)
|++.+
T Consensus 411 Ykeal 415 (966)
T KOG4626|consen 411 YKEAL 415 (966)
T ss_pred HHHHH
Confidence 55544
No 72
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.27 E-value=0.0001 Score=51.76 Aligned_cols=144 Identities=18% Similarity=0.131 Sum_probs=94.1
Q ss_pred HHHHHHhcCChhHHHHHhccCC-C--CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccch
Q 036068 12 IVSRYINRGQVDIARQCFDQMP-E--RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88 (178)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~-~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 88 (178)
+-..+.-.|+-+....+..... . .|...-+.+....++.|++..|.+.|++..... ++|...|+.+--+|-+.|++
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccCh
Confidence 3444444444444444444322 1 244455557777777777777777777766553 56777777777777777887
Q ss_pred hhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 036068 89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQML 157 (178)
Q Consensus 89 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 157 (178)
++|..-|.+..+... .++...|.+-..|.-.|+.++|. .|...-+.+.......|++++|..+..+-.
T Consensus 151 ~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 151 DEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred hHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 777777777766543 24566777777777777777776 366666777777777888888877665544
No 73
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.27 E-value=2.9e-05 Score=50.59 Aligned_cols=95 Identities=8% Similarity=-0.014 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 84 (178)
.+..+...+.+.|++++|...|+.... .+...|..+-..+.+.|++++|...|++..+.. +.+...+..+-.++.+
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 355678888999999999999998764 377888999999999999999999999998865 4577889999999999
Q ss_pred ccchhhHHHHHHHHHHhCc
Q 036068 85 LRALDLGEWIKTYIDKNKV 103 (178)
Q Consensus 85 ~~~~~~a~~~~~~m~~~~~ 103 (178)
.|++++|...++...+..+
T Consensus 105 ~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred cCCHHHHHHHHHHHHHhCC
Confidence 9999999999999988753
No 74
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.22 E-value=2.3e-05 Score=50.20 Aligned_cols=98 Identities=10% Similarity=0.076 Sum_probs=74.7
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 80 (178)
.+......+...+.+.|++++|.+.|+...+ .+...|..+-..+.+.|++++|...+++..+.+ +.+...+..+-.
T Consensus 15 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 15 EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 3445566777888888888888888887643 366777788888888888888888888876664 345667777777
Q ss_pred HhccccchhhHHHHHHHHHHhC
Q 036068 81 ARANLRALDLGEWIKTYIDKNK 102 (178)
Q Consensus 81 ~~~~~~~~~~a~~~~~~m~~~~ 102 (178)
++...|++++|...++...+..
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHhc
Confidence 8888888888888888777764
No 75
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.17 E-value=0.00012 Score=51.46 Aligned_cols=122 Identities=15% Similarity=0.085 Sum_probs=103.5
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 80 (178)
.|....+......++.|++..|...|.+... +|...|+.+-.+|.+.|+.++|..-|.+..+... -+....+.+.-
T Consensus 98 ~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgm 176 (257)
T COG5010 98 KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-NEPSIANNLGM 176 (257)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHH
Confidence 3444566688999999999999999998864 4999999999999999999999999999877642 24567777888
Q ss_pred HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
.+.-.|+++.|..++......+. -+..+-..+.......|+++.|.
T Consensus 177 s~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 177 SLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred HHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHH
Confidence 88888999999999988887763 47888899999999999999987
No 76
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.16 E-value=0.0002 Score=52.00 Aligned_cols=148 Identities=12% Similarity=0.073 Sum_probs=80.6
Q ss_pred HHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc----HHHHHHHHHHhc
Q 036068 11 AIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD----EFTIVSILTARA 83 (178)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~ 83 (178)
.|-.-|...|-+|.|+++|..+.+ --......|+..|-...+|++|+++-.++.+.+-.+. +..|.-+...+.
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence 455667777888888888877654 2556666777777777777777777666655543322 234555555555
Q ss_pred cccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------c--chhhHHHHHHHHHhcCChhHHHH
Q 036068 84 NLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------K--DKFSWTTMIVGLAISGNGDKALD 151 (178)
Q Consensus 84 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~--~~~~~~~li~~~~~~~~~~~a~~ 151 (178)
..++.+.|..+++...+...+ .+..--.+-+.+...|+++.|. | -..+...|..+|.+.|+.++...
T Consensus 192 ~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 192 ASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred hhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 555555555555555444322 1222222233344455555554 1 12233444555555555555555
Q ss_pred HHHHHHHc
Q 036068 152 MFSQMLRA 159 (178)
Q Consensus 152 ~~~~m~~~ 159 (178)
.+.++.+.
T Consensus 271 fL~~~~~~ 278 (389)
T COG2956 271 FLRRAMET 278 (389)
T ss_pred HHHHHHHc
Confidence 55554443
No 77
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.15 E-value=9.1e-05 Score=55.98 Aligned_cols=114 Identities=13% Similarity=0.063 Sum_probs=93.8
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH
Q 036068 39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC 118 (178)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 118 (178)
.-..|+..+...++++.|..+|+++.+.. |+.. ..+.+.+...++..+|.+++++..+.. +.+...+..-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEVA--VLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcHH--HHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 44566777777899999999999998875 6644 447888888888889999998888654 346777777788899
Q ss_pred hcCChhhhc----------c-chhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 036068 119 ICADVEKAQ----------K-DKFSWTTMIVGLAISGNGDKALDMFSQML 157 (178)
Q Consensus 119 ~~~~~~~a~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 157 (178)
+.++.+.|. | +..+|..|...|.+.|+++.|+-.++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999998 4 57799999999999999999999888775
No 78
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=7.7e-05 Score=56.42 Aligned_cols=150 Identities=15% Similarity=0.082 Sum_probs=127.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhc
Q 036068 7 ISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARA 83 (178)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 83 (178)
.|...+.+.|+-.++.++|...|+...+ .....|+.+-+-|....+.+.|.+.+++..+.+ +.|-..|-.+-++|.
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYE 409 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHH
Confidence 3455566777888889999999997654 467789889999999999999999999988876 568889999999999
Q ss_pred cccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHH
Q 036068 84 NLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDM 152 (178)
Q Consensus 84 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~ 152 (178)
-.+...=|.-.|+...+-. +.|+..|.+|-.+|.+.++.++|. .+...+..|...|-+.++..+|-+.
T Consensus 410 im~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred HhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHH
Confidence 8888888888888887765 458999999999999999999998 2447889999999999999999999
Q ss_pred HHHHHH
Q 036068 153 FSQMLR 158 (178)
Q Consensus 153 ~~~m~~ 158 (178)
|++-++
T Consensus 489 yek~v~ 494 (559)
T KOG1155|consen 489 YEKYVE 494 (559)
T ss_pred HHHHHH
Confidence 988765
No 79
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.10 E-value=0.00066 Score=56.18 Aligned_cols=109 Identities=12% Similarity=-0.076 Sum_probs=48.7
Q ss_pred HHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhH
Q 036068 15 RYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLG 91 (178)
Q Consensus 15 ~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 91 (178)
.+...|++++|.++|+++.+ | |...+..+...+...++.++|++.++++... .|+...+..++..+...++..+|
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHH
Confidence 44444555555555555542 1 3334444445555555555555555554443 23333332222222223333335
Q ss_pred HHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhh
Q 036068 92 EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126 (178)
Q Consensus 92 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 126 (178)
.+.++.+.+..+ .+...+..++..+.+.|-...|
T Consensus 189 L~~~ekll~~~P-~n~e~~~~~~~~l~~~~~~~~a 222 (822)
T PRK14574 189 LQASSEAVRLAP-TSEEVLKNHLEILQRNRIVEPA 222 (822)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHH
Confidence 555555555432 1344444444444444444333
No 80
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.09 E-value=0.00024 Score=45.46 Aligned_cols=110 Identities=14% Similarity=0.090 Sum_probs=79.0
Q ss_pred ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID 115 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 115 (178)
+......+...+.+.|+.++|.+.|++....+ +.+...+..+..++.+.|++++|..+++...+.+..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~----------- 83 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD----------- 83 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----------
Confidence 44555666777888889999999998887765 346677778888888888999999888887775432
Q ss_pred HHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHH
Q 036068 116 MYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172 (178)
Q Consensus 116 ~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 172 (178)
+...+..+...+...|++++|...|++..+. .|+...+..+.
T Consensus 84 -------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 125 (135)
T TIGR02552 84 -------------DPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEYSELK 125 (135)
T ss_pred -------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHHHHH
Confidence 2334455556777788888888888887764 46666544433
No 81
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.09 E-value=0.00012 Score=50.32 Aligned_cols=107 Identities=12% Similarity=0.047 Sum_probs=62.2
Q ss_pred cCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh-ccccc--hhhHH
Q 036068 19 RGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR-ANLRA--LDLGE 92 (178)
Q Consensus 19 ~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~--~~~a~ 92 (178)
.++.+++...+++..+ .|...|..|-..|...|++++|...|++..+.. +-+...+..+..++ .+.|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 4444555544444321 366666666666666677777777666666554 22455555555543 44454 36666
Q ss_pred HHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 93 WIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 93 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
++++...+..+. ++.++..+-..+.+.|++++|.
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai 164 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAI 164 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHH
Confidence 666666666543 4556666666666667766664
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.09 E-value=0.00018 Score=49.79 Aligned_cols=119 Identities=13% Similarity=0.029 Sum_probs=103.5
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH
Q 036068 39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC 118 (178)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 118 (178)
+.--|--.|...|+...|..-+++.++.. +-+..++..+...|-+.|+.+.|.+-|+...+..+. +..+.|..=.-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 34556678999999999999999999885 335689999999999999999999999999887744 6778899999999
Q ss_pred hcCChhhhc-------------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 119 ICADVEKAQ-------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 119 ~~~~~~~a~-------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
..|.+++|. .-..+|..+.-+..+.|+++.|.++|++-++.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 999999997 25678889999999999999999999999875
No 83
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.00066 Score=51.60 Aligned_cols=168 Identities=17% Similarity=0.112 Sum_probs=100.2
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 80 (178)
.....|+.+-+-|....+...|.+-++...+ .|-..|--|-.+|.-.+...-|+-.|++-.... +-|...|.+|-+
T Consensus 362 ~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~ 440 (559)
T KOG1155|consen 362 KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGE 440 (559)
T ss_pred chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHH
Confidence 3455677777778888888887777776543 366666666777776666666776666665543 335566777777
Q ss_pred HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc---------------cchhhH---HHHHHHHHh
Q 036068 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ---------------KDKFSW---TTMIVGLAI 142 (178)
Q Consensus 81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~---------------~~~~~~---~~li~~~~~ 142 (178)
+|.+.+++++|++.|......|- .....+..|-..|-+.++.++|. .+..|. --|...+-+
T Consensus 441 CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k 519 (559)
T KOG1155|consen 441 CYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKK 519 (559)
T ss_pred HHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 77777777777777766666552 24455666666666666666664 111111 113355556
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhHHHHHHhhh
Q 036068 143 SGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175 (178)
Q Consensus 143 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~ 175 (178)
.+++++|..+..+... | .+..+--..|++.+
T Consensus 520 ~~~~~~As~Ya~~~~~-~-~~e~eeak~LlRei 550 (559)
T KOG1155|consen 520 MKDFDEASYYATLVLK-G-ETECEEAKALLREI 550 (559)
T ss_pred hcchHHHHHHHHHHhc-C-CchHHHHHHHHHHH
Confidence 6666666655544333 2 44444444444433
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.03 E-value=0.0011 Score=49.59 Aligned_cols=153 Identities=11% Similarity=0.036 Sum_probs=104.3
Q ss_pred hHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCC-CCcH--HHHHHHHH
Q 036068 7 ISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI-MGDE--FTIVSILT 80 (178)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~--~~~~~ll~ 80 (178)
.....+...+...|++++|.+.+++..+ .+...+..+-..+...|++++|...+++.....- .|+. ..|..+..
T Consensus 115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 3444566788899999999999998764 3566788888899999999999999999776532 2232 34567888
Q ss_pred HhccccchhhHHHHHHHHHHhCc-ccchHHH-H--HHHHHHHhcCChhhhc----------cc----hhhHH--HHHHHH
Q 036068 81 ARANLRALDLGEWIKTYIDKNKV-KNDIFAG-N--ALIDMYCICADVEKAQ----------KD----KFSWT--TMIVGL 140 (178)
Q Consensus 81 ~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~-~--~ll~~~~~~~~~~~a~----------~~----~~~~~--~li~~~ 140 (178)
.+...|++++|..+++....... .+..... + .++..+...|....+. +. ...++ ....++
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~ 274 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALAL 274 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 89999999999999999864433 1222211 1 2233333344222211 11 11122 566777
Q ss_pred HhcCChhHHHHHHHHHHHc
Q 036068 141 AISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 141 ~~~~~~~~a~~~~~~m~~~ 159 (178)
...|+.+.|..+++.+...
T Consensus 275 ~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 275 AGAGDKDALDKLLAALKGR 293 (355)
T ss_pred hcCCCHHHHHHHHHHHHHH
Confidence 8899999999999998764
No 85
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.03 E-value=6.7e-05 Score=43.88 Aligned_cols=93 Identities=12% Similarity=0.115 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 84 (178)
+|..+...+...|++++|...+++..+ .+...+..+...+...+++++|.+.|++..... ..+..++..+...+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 355677778888888888888887653 244567777778888888888888888877654 2344577777788888
Q ss_pred ccchhhHHHHHHHHHHh
Q 036068 85 LRALDLGEWIKTYIDKN 101 (178)
Q Consensus 85 ~~~~~~a~~~~~~m~~~ 101 (178)
.|++++|...+....+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 88888888888776554
No 86
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.02 E-value=0.0012 Score=48.36 Aligned_cols=93 Identities=12% Similarity=-0.030 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccc
Q 036068 9 WTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL 85 (178)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 85 (178)
|..+-..+.+.|++++|...|++..+ .+...|+.+-..+...|++++|.+.|++..+.. +-+..++..+..++...
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 44444455555555555555554432 244455555555555555555555555555432 11234444444555555
Q ss_pred cchhhHHHHHHHHHHhC
Q 036068 86 RALDLGEWIKTYIDKNK 102 (178)
Q Consensus 86 ~~~~~a~~~~~~m~~~~ 102 (178)
|++++|.+.++...+..
T Consensus 146 g~~~eA~~~~~~al~~~ 162 (296)
T PRK11189 146 GRYELAQDDLLAFYQDD 162 (296)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 55555555555555443
No 87
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.00014 Score=55.39 Aligned_cols=152 Identities=12% Similarity=0.065 Sum_probs=96.0
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 81 (178)
|+.+|..--....-.+++++|..=|++..+ .++..|--+-.+.-+.+.+++++..|++.+++ .+-.+..|+.....
T Consensus 393 n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAei 471 (606)
T KOG0547|consen 393 NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEI 471 (606)
T ss_pred CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHH
Confidence 444555555555555666666666665543 24455555555555667777777777776654 34456677777777
Q ss_pred hccccchhhHHHHHHHHHHhCcc-------cchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhc
Q 036068 82 RANLRALDLGEWIKTYIDKNKVK-------NDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAIS 143 (178)
Q Consensus 82 ~~~~~~~~~a~~~~~~m~~~~~~-------~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~ 143 (178)
+...++++.|.+.|+..++.... +.+.+.-.++ .+...+++..|. .....|..|...-.++
T Consensus 472 LtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~ 550 (606)
T KOG0547|consen 472 LTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQR 550 (606)
T ss_pred HhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH
Confidence 77888888888877766654322 2222222222 222445555554 3577888888999999
Q ss_pred CChhHHHHHHHHHHH
Q 036068 144 GNGDKALDMFSQMLR 158 (178)
Q Consensus 144 ~~~~~a~~~~~~m~~ 158 (178)
|+.++|+++|++-..
T Consensus 551 ~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 551 GKIDEAIELFEKSAQ 565 (606)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999999987653
No 88
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.00 E-value=0.00085 Score=43.69 Aligned_cols=122 Identities=8% Similarity=0.013 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCCCChh------HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcH--HHHHHHH
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPERDYV------LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDE--FTIVSIL 79 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll 79 (178)
.|..++..+ ..++.+.+...++.+.+.... ..-.+-..+...|++++|...|+........|+. .....+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 455555555 366777766666666542111 1222335566677777777777777666522221 2333455
Q ss_pred HHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHH
Q 036068 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQ 155 (178)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 155 (178)
..+...|++++|...++......+ ....+...-..+.+.|+.++|...|++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~-------------------------~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAF-------------------------KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcch-------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666677777777777644221111 122344556777888888888888875
No 89
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.99 E-value=0.00015 Score=45.01 Aligned_cols=98 Identities=9% Similarity=0.018 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHhccCCC--CC----hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCC--CcHHHHHHH
Q 036068 7 ISWTAIVSRYINRGQVDIARQCFDQMPE--RD----YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM--GDEFTIVSI 78 (178)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~l 78 (178)
.++-.+...+.+.|++++|.+.|+++.+ |+ ...+..+...+.+.|++++|.+.|++.....-. .....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4566778888999999999999998864 32 345666888999999999999999998765311 124567778
Q ss_pred HHHhccccchhhHHHHHHHHHHhCcc
Q 036068 79 LTARANLRALDLGEWIKTYIDKNKVK 104 (178)
Q Consensus 79 l~~~~~~~~~~~a~~~~~~m~~~~~~ 104 (178)
..++.+.+++++|.+.++.+.+..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 88889999999999999999988643
No 90
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.94 E-value=0.00018 Score=52.44 Aligned_cols=147 Identities=13% Similarity=0.040 Sum_probs=118.6
Q ss_pred HHHHHHHHhcCChhHHHHHhccCC--CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHH-HHHHHHhcccc
Q 036068 10 TAIVSRYINRGQVDIARQCFDQMP--ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTI-VSILTARANLR 86 (178)
Q Consensus 10 ~~li~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~~ 86 (178)
+.+-++|.+-|.+.+|...|+.-. .|-+.||-.|-..|.+..+.+.|+.++.+-.+. .|-.+|| .-+.+.+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 457788999999999999988654 468889999999999999999999999887665 4555554 45666777788
Q ss_pred chhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHH
Q 036068 87 ALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQ 155 (178)
Q Consensus 87 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~ 155 (178)
+.+++.++|+...+.. +.++.....+-.+|.-.++.+-|. .+...|+.+--+|...+++|-++.-|.+
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 8999999999988875 345666677777888888888887 4788888888888889999999998888
Q ss_pred HHHc
Q 036068 156 MLRA 159 (178)
Q Consensus 156 m~~~ 159 (178)
.+..
T Consensus 384 Alst 387 (478)
T KOG1129|consen 384 ALST 387 (478)
T ss_pred HHhh
Confidence 7754
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.90 E-value=0.00035 Score=50.88 Aligned_cols=119 Identities=13% Similarity=0.091 Sum_probs=81.2
Q ss_pred HHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHh----c
Q 036068 45 DGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI----C 120 (178)
Q Consensus 45 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~ 120 (178)
..+...|++++|++++.+- .+.......+..+.+.++++.|.+.++.|.+.. +..+...+..++.. .
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCc
Confidence 4556678888888776542 355666778889999999999999999998754 23444445544443 3
Q ss_pred CChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHh
Q 036068 121 ADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173 (178)
Q Consensus 121 ~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 173 (178)
+.+.+|. +++.+.|.+..+....|++++|.+++.+..+.+ +-+..|...++-
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv 243 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIV 243 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHH
Confidence 3566665 577888889999999999999999999977532 223444444443
No 92
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.90 E-value=0.00079 Score=48.87 Aligned_cols=142 Identities=11% Similarity=0.116 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHhcCChhHHHHHhccCCCCChhHHH-----HHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068 7 ISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWT-----AMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81 (178)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 81 (178)
.+|..+++..-+.+.++.|..+|.+..+....+|. ++|+.+ ..++.+.|..+|+...+. ...+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 45666666666666677777777766543222222 222222 124445577777766554 33455566666666
Q ss_pred hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 036068 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI 161 (178)
Q Consensus 82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 161 (178)
+.+.++.+.+..+|+..... +.+... ....|...+.--.+.|+.+.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~--------------------~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~-- 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQ--------------------SKKIWKKFIEFESKYGDLESVRKVEKRAEEL-- 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHH--------------------CHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhH--------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--
Confidence 66667777777777666554 222111 2346778888888888999999999888874
Q ss_pred CCChhHHHHHHh
Q 036068 162 KPDEVAYVGVLS 173 (178)
Q Consensus 162 ~p~~~t~~~li~ 173 (178)
.|+...+..+++
T Consensus 137 ~~~~~~~~~f~~ 148 (280)
T PF05843_consen 137 FPEDNSLELFSD 148 (280)
T ss_dssp TTTS-HHHHHHC
T ss_pred hhhhhHHHHHHH
Confidence 555555555544
No 93
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.90 E-value=0.00082 Score=54.63 Aligned_cols=122 Identities=5% Similarity=-0.044 Sum_probs=96.3
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 80 (178)
.++..+-.|.+...+.|++++|..+++...+ | +......+...+.+.+++++|....++..... +-+......+-.
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~ 162 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAK 162 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 3466777888888899999999999988764 4 55667778888889999999999999988875 225566677777
Q ss_pred HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
++.+.|++++|..+|+++...+. -+..++..+-..+-+.|+.++|.
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~ 208 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRAR 208 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHH
Confidence 88899999999999999888443 24777778888888888888875
No 94
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.88 E-value=0.0018 Score=52.82 Aligned_cols=153 Identities=10% Similarity=0.067 Sum_probs=99.8
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 80 (178)
|.+...-.......-.|++++|.+++.+..+ .+...|-+|-..|...|+.+++...+-..-.. .+-|..-|..+-.
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~lad 215 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLAD 215 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHH
Confidence 4444444444445556999999999998865 37778999999999999999988766443322 2335567777777
Q ss_pred HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------c--chh----hHHHHHHHHHhcC
Q 036068 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------K--DKF----SWTTMIVGLAISG 144 (178)
Q Consensus 81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~--~~~----~~~~li~~~~~~~ 144 (178)
-..+.|++++|.-+|.+.++..++ +....---...|-+.|+...|. | |.. .-...+..+-..+
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 788888888888888888887644 3333333455677788887776 2 111 1122334444555
Q ss_pred ChhHHHHHHHHHHH
Q 036068 145 NGDKALDMFSQMLR 158 (178)
Q Consensus 145 ~~~~a~~~~~~m~~ 158 (178)
+.+.|.+.++....
T Consensus 295 ~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 295 ERERAAKALEGALS 308 (895)
T ss_pred HHHHHHHHHHHHHh
Confidence 55666666665554
No 95
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.88 E-value=0.00078 Score=50.30 Aligned_cols=143 Identities=10% Similarity=0.049 Sum_probs=97.0
Q ss_pred HHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHh----hcCChhHHHHHHHHhHhCCCCCcH-HHHHHHHHHhcc
Q 036068 13 VSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYL----RVNRFREALTLFQEMQTSNIMGDE-FTIVSILTARAN 84 (178)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~ 84 (178)
...+...|++++|.+.+++..+ | |...+.. ...+. ..+..+.+.+.+.. .....|+. .....+...+..
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHH
Confidence 3345678899999888887543 3 3334432 21222 23445555555554 22223433 344456667889
Q ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------c---c--hhhHHHHHHHHHhcCChhHH
Q 036068 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------K---D--KFSWTTMIVGLAISGNGDKA 149 (178)
Q Consensus 85 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~---~--~~~~~~li~~~~~~~~~~~a 149 (178)
.|++++|.+.++...+..+ .+...+..+-..|...|++++|. | + ...|-.+...+...|++++|
T Consensus 127 ~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 127 AGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred cCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999988764 35777888888899999999987 2 1 12344677888999999999
Q ss_pred HHHHHHHHHc
Q 036068 150 LDMFSQMLRA 159 (178)
Q Consensus 150 ~~~~~~m~~~ 159 (178)
..++++....
T Consensus 206 ~~~~~~~~~~ 215 (355)
T cd05804 206 LAIYDTHIAP 215 (355)
T ss_pred HHHHHHHhcc
Confidence 9999998643
No 96
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.86 E-value=0.0004 Score=51.25 Aligned_cols=104 Identities=14% Similarity=0.181 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccc
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRA 87 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 87 (178)
+.+..|.-+...|+...|..+-.+.+-|+...|-.-+.+++..++|++-.++-+. . -++.-|-.++.+|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHCCC
Confidence 4455677788888888888888888888888888888999988888887765432 1 234678888888888888
Q ss_pred hhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 88 LDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 88 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
..+|..+... + .+..-+..|.++|++.+|.
T Consensus 253 ~~eA~~yI~k-----~-----~~~~rv~~y~~~~~~~~A~ 282 (319)
T PF04840_consen 253 KKEASKYIPK-----I-----PDEERVEMYLKCGDYKEAA 282 (319)
T ss_pred HHHHHHHHHh-----C-----ChHHHHHHHHHCCCHHHHH
Confidence 8888877655 1 1256677788888877763
No 97
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.83 E-value=0.00057 Score=39.76 Aligned_cols=95 Identities=12% Similarity=0.094 Sum_probs=70.5
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH
Q 036068 39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC 118 (178)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 118 (178)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...+++++|.+.++...+..... .
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----------- 68 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN-A----------- 68 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-h-----------
Confidence 34556777888999999999999987764 2344677778888889999999999998887765332 2
Q ss_pred hcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 119 ICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 119 ~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
..+..+...+...|+.++|...+.+..+
T Consensus 69 ------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 69 ------------KAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred ------------hHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 2345566666777777888888777664
No 98
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.79 E-value=0.0049 Score=47.16 Aligned_cols=154 Identities=12% Similarity=0.014 Sum_probs=112.4
Q ss_pred CcchhHHHHHHHHHHhcCChhHHHHHhccCCC--CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80 (178)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 80 (178)
.|+...+...+.+......-..+..++.+-.+ ....-|..-+..| ..|..++|...++.+.... +-|..-......
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~-~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~ 348 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTY-LAGQYDEALKLLQPLIAAQ-PDNPYYLELAGD 348 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHHHHHH-HhcccchHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 35555556555555444433333333333222 2444555555544 5678999999999987763 345666667778
Q ss_pred HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHH
Q 036068 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKA 149 (178)
Q Consensus 81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a 149 (178)
.+.+.++.++|.+.++.+....+.. ....-.+-..|.+.|++.+|. .|...|..|..+|...|+..++
T Consensus 349 i~~~~nk~~~A~e~~~kal~l~P~~-~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 349 ILLEANKAKEAIERLKKALALDPNS-PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred HHHHcCChHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH
Confidence 8999999999999999998875432 677778888999999999987 4899999999999999999999
Q ss_pred HHHHHHHHHc
Q 036068 150 LDMFSQMLRA 159 (178)
Q Consensus 150 ~~~~~~m~~~ 159 (178)
..-..++...
T Consensus 428 ~~A~AE~~~~ 437 (484)
T COG4783 428 LLARAEGYAL 437 (484)
T ss_pred HHHHHHHHHh
Confidence 9988887653
No 99
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.76 E-value=0.00082 Score=43.76 Aligned_cols=23 Identities=13% Similarity=-0.130 Sum_probs=10.7
Q ss_pred HHhccccchhhHHHHHHHHHHhC
Q 036068 80 TARANLRALDLGEWIKTYIDKNK 102 (178)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~m~~~~ 102 (178)
..+...|++++|...|+......
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~ 78 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANA 78 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC
Confidence 34444444444444444444433
No 100
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.76 E-value=0.0022 Score=39.69 Aligned_cols=101 Identities=12% Similarity=-0.014 Sum_probs=74.5
Q ss_pred hHHHHHHHHHhhcCChhHHHHHHHHhHhCCC--CCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068 38 VLWTAMIDGYLRVNRFREALTLFQEMQTSNI--MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID 115 (178)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 115 (178)
.++-.+...+.+.|++++|.+.|+++.+..- ......+..+..++.+.|++++|.+.++.+.+.......
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------- 74 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK-------- 74 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc--------
Confidence 3556677788899999999999999876531 111346667888999999999999999998876432110
Q ss_pred HHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 116 MYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 116 ~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
....+..+...+.+.|+.++|...++++.+.
T Consensus 75 -------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 75 -------------APDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred -------------ccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 1123445556677889999999999999876
No 101
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.73 E-value=0.0013 Score=51.59 Aligned_cols=93 Identities=13% Similarity=0.138 Sum_probs=62.4
Q ss_pred HHHHHHHHhcCChhHHHHHhccCCC--CC-hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcccc
Q 036068 10 TAIVSRYINRGQVDIARQCFDQMPE--RD-YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLR 86 (178)
Q Consensus 10 ~~li~~~~~~~~~~~a~~~~~~m~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 86 (178)
.-+...|-..|++++|++.+++..+ |+ +..|.+--+.|-..|++++|.+.++....... -|...-+.....+.+.|
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~ 276 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAG 276 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCC
Confidence 4455666677777777777776553 32 44566666677777777777777777666653 36666666677777777
Q ss_pred chhhHHHHHHHHHHhCc
Q 036068 87 ALDLGEWIKTYIDKNKV 103 (178)
Q Consensus 87 ~~~~a~~~~~~m~~~~~ 103 (178)
+.++|.+++....+.+.
T Consensus 277 ~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 277 RIEEAEKTASLFTREDV 293 (517)
T ss_pred CHHHHHHHHHhhcCCCC
Confidence 77777777777766554
No 102
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.71 E-value=0.0016 Score=48.99 Aligned_cols=86 Identities=10% Similarity=0.024 Sum_probs=40.9
Q ss_pred HHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhH
Q 036068 15 RYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLG 91 (178)
Q Consensus 15 ~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 91 (178)
.....|++++|++.|++..+ .+...|..+-.+|.+.|++++|+..+++..+.. +.+...|..+-.+|.+.|++++|
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence 33444555555555554432 133444444445555555555555555554432 12334444444455555555555
Q ss_pred HHHHHHHHHh
Q 036068 92 EWIKTYIDKN 101 (178)
Q Consensus 92 ~~~~~~m~~~ 101 (178)
...|+...+.
T Consensus 90 ~~~~~~al~l 99 (356)
T PLN03088 90 KAALEKGASL 99 (356)
T ss_pred HHHHHHHHHh
Confidence 5555554443
No 103
>PLN02789 farnesyltranstransferase
Probab=97.71 E-value=0.0081 Score=44.49 Aligned_cols=167 Identities=8% Similarity=0.021 Sum_probs=108.6
Q ss_pred HHHHHHHHHHhcC-ChhHHHHHhccCCC---CChhHHHHHHHHHhhcCCh--hHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068 8 SWTAIVSRYINRG-QVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRF--REALTLFQEMQTSNIMGDEFTIVSILTA 81 (178)
Q Consensus 8 ~~~~li~~~~~~~-~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 81 (178)
+|+..-..+...| ++++++.+++++.+ ++..+|+.--..+.+.|+. +++.++++++.+..- -|..+|+-.--+
T Consensus 73 aW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~ 151 (320)
T PLN02789 73 VWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWV 151 (320)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 4555545555556 56777877776653 3555666554445555542 567778878777653 366777777777
Q ss_pred hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhc---CChh----hhc-----------cchhhHHHHHHHHHhc
Q 036068 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC---ADVE----KAQ-----------KDKFSWTTMIVGLAIS 143 (178)
Q Consensus 82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---~~~~----~a~-----------~~~~~~~~li~~~~~~ 143 (178)
+.+.|+++++.+.++.+++.++. +...|+..-..+.+. |..+ ... .|...|+.+...+...
T Consensus 152 l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~ 230 (320)
T PLN02789 152 LRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDD 230 (320)
T ss_pred HHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcC
Confidence 77888899999999999888754 566777666555544 2222 111 4788888888888773
Q ss_pred ----CChhHHHHHHHHHHHcCCCCChhHHHHHHhhhhc
Q 036068 144 ----GNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177 (178)
Q Consensus 144 ----~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~ 177 (178)
++..+|.+.+.+..+.+ ..+......|++.|++
T Consensus 231 ~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 231 KEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred CcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 34466888888866543 2355667777776654
No 104
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.71 E-value=0.00013 Score=59.63 Aligned_cols=141 Identities=12% Similarity=0.073 Sum_probs=110.3
Q ss_pred CChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHH
Q 036068 20 GQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKT 96 (178)
Q Consensus 20 ~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 96 (178)
+..++|+++|.+... +|...-|-+-..++..|++.+|..+|.+..+... -+..+|..+.++|...|++..|.++|+
T Consensus 626 k~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe 704 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYE 704 (1018)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHH
Confidence 456789999987654 4778888888899999999999999999988764 255678889999999999999999997
Q ss_pred HHH-HhCcccchHHHHHHHHHHHhcCChhhhc------------cchhhHHHHHHHH------------------HhcCC
Q 036068 97 YID-KNKVKNDIFAGNALIDMYCICADVEKAQ------------KDKFSWTTMIVGL------------------AISGN 145 (178)
Q Consensus 97 ~m~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~------------~~~~~~~~li~~~------------------~~~~~ 145 (178)
... +.+...++.+.+-|-.++.+.|.+.++. ....-||..+... ...+.
T Consensus 705 ~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~ 784 (1018)
T KOG2002|consen 705 NCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKE 784 (1018)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 654 5566778899999999999999999987 1344455444322 22356
Q ss_pred hhHHHHHHHHHHHcCC
Q 036068 146 GDKALDMFSQMLRASI 161 (178)
Q Consensus 146 ~~~a~~~~~~m~~~g~ 161 (178)
.+.|.++|.+|...+-
T Consensus 785 le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 785 LEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 6888899999887653
No 105
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.69 E-value=5.2e-05 Score=44.55 Aligned_cols=77 Identities=12% Similarity=0.154 Sum_probs=44.7
Q ss_pred cCChhHHHHHhccCCC--C---ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHH
Q 036068 19 RGQVDIARQCFDQMPE--R---DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEW 93 (178)
Q Consensus 19 ~~~~~~a~~~~~~m~~--~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 93 (178)
.|+++.|+.+++++.+ | +...+-.+-.+|.+.|++++|..++++ .+.+. .+......+.+++.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4667777777777653 2 223344466677777777777777776 22221 123344445666777777777777
Q ss_pred HHHH
Q 036068 94 IKTY 97 (178)
Q Consensus 94 ~~~~ 97 (178)
.++.
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7653
No 106
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.65 E-value=0.0033 Score=51.25 Aligned_cols=121 Identities=12% Similarity=0.034 Sum_probs=104.4
Q ss_pred ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc-HHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHH
Q 036068 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD-EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALI 114 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 114 (178)
++..+-.|-....+.|..++|..+|+...+.. |+ ......+..++.+.+++++|....+...+..+. +......+-
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHH
Confidence 67788888899999999999999999998874 44 567778889999999999999999999998754 577788888
Q ss_pred HHHHhcCChhhhc----------c-chhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 115 DMYCICADVEKAQ----------K-DKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 115 ~~~~~~~~~~~a~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
..+.+.|++++|. | +..++-.+-..+-..|+.++|...|++..+.
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8899999999997 2 3677778888888999999999999999874
No 107
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.0034 Score=48.87 Aligned_cols=169 Identities=19% Similarity=0.172 Sum_probs=114.1
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHH---------------------
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTL--------------------- 59 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~--------------------- 59 (178)
..+.+|-++-..|.--|++.+|.+.|.+-.. | =...|-..-.+|+..|+-|+|+..
T Consensus 310 ~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgme 389 (611)
T KOG1173|consen 310 SKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGME 389 (611)
T ss_pred CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHH
Confidence 4567788888888888999999999887542 1 223444444455544444444444
Q ss_pred -------------HHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHH----hCcc--cchHHHHHHHHHHHhc
Q 036068 60 -------------FQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK----NKVK--NDIFAGNALIDMYCIC 120 (178)
Q Consensus 60 -------------~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~--~~~~~~~~ll~~~~~~ 120 (178)
|.+-.... +-|+...+-+--..-..+.+.+|..+|+.... .+.+ .-..+++.|-..|.|+
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 44433221 22334444444444556778888888865541 1111 1234577788889999
Q ss_pred CChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhh
Q 036068 121 ADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175 (178)
Q Consensus 121 ~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~ 175 (178)
+.+++|. .|..++.++--.|...|+++.|.+.|++.+ .+.|+..+...++..+
T Consensus 469 ~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLA 532 (611)
T ss_pred hhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHH
Confidence 9999997 588899999999999999999999999977 5689998888877644
No 108
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.60 E-value=0.01 Score=41.66 Aligned_cols=123 Identities=9% Similarity=-0.088 Sum_probs=88.2
Q ss_pred CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc----HHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchH--
Q 036068 35 RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD----EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIF-- 108 (178)
Q Consensus 35 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-- 108 (178)
.....+-.+...+.+.|++++|...|++..... |+ ...+..+..++.+.|++++|...++.+.+..+.....
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 366677788889999999999999999987753 32 2466778889999999999999999998876532222
Q ss_pred HHHHHHHHHHhc--------CChhhhc----------cch-hhH-----------------HHHHHHHHhcCChhHHHHH
Q 036068 109 AGNALIDMYCIC--------ADVEKAQ----------KDK-FSW-----------------TTMIVGLAISGNGDKALDM 152 (178)
Q Consensus 109 ~~~~ll~~~~~~--------~~~~~a~----------~~~-~~~-----------------~~li~~~~~~~~~~~a~~~ 152 (178)
++..+-..+... |+.++|. |+. ..+ -.+...+.+.|++++|...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 188 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINR 188 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 344444444433 4555554 322 121 1344667888999999999
Q ss_pred HHHHHHc
Q 036068 153 FSQMLRA 159 (178)
Q Consensus 153 ~~~m~~~ 159 (178)
+++..+.
T Consensus 189 ~~~al~~ 195 (235)
T TIGR03302 189 FETVVEN 195 (235)
T ss_pred HHHHHHH
Confidence 9999875
No 109
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.59 E-value=0.0036 Score=51.12 Aligned_cols=121 Identities=11% Similarity=0.131 Sum_probs=87.3
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC----CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE----RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 79 (178)
-++..|.-+.+++.+.|++.+|+.+|..+.. .+...|--+-+.|...|..++|.+.|.+..... +-+...--.|-
T Consensus 412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~La 490 (895)
T KOG2076|consen 412 DDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLA 490 (895)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHH
Confidence 3455678889999999999999999998875 377788889999999999999999999987764 22334444566
Q ss_pred HHhccccchhhHHHHHHHHH--------HhCcccchHHHHHHHHHHHhcCChhh
Q 036068 80 TARANLRALDLGEWIKTYID--------KNKVKNDIFAGNALIDMYCICADVEK 125 (178)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~ll~~~~~~~~~~~ 125 (178)
..+-+.|+.++|.+.+..+. ..+..|.....-...+.+...|+.++
T Consensus 491 sl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 491 SLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 66778888888888887743 22344444444445555555555554
No 110
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.57 E-value=0.002 Score=40.95 Aligned_cols=50 Identities=4% Similarity=-0.033 Sum_probs=34.7
Q ss_pred CCCCcHHHHHHHHHHhccccchhhHHHHHHHHHH-hCcccchHHHHHHHHH
Q 036068 67 NIMGDEFTIVSILTARANLRALDLGEWIKTYIDK-NKVKNDIFAGNALIDM 116 (178)
Q Consensus 67 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~ 116 (178)
...|+..+..+++.+|+..+++..|.++++...+ .+++.+..+|..|+.-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4567777777778887777778777777776654 3455556666666653
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.55 E-value=0.00069 Score=54.00 Aligned_cols=167 Identities=15% Similarity=0.090 Sum_probs=116.0
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCC--CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhC-----C--C--------
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMP--ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTS-----N--I-------- 68 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~--~-------- 68 (178)
+..|.-+|.+|...|+.++|..+..+-. .||..-|..+.+......-+++|.++.++.-.. | +
T Consensus 424 lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~ 503 (777)
T KOG1128|consen 424 LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSE 503 (777)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHH
Confidence 3467888999999999999888877543 467778888887777777778888777764322 0 0
Q ss_pred ------------CCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc---------
Q 036068 69 ------------MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------- 127 (178)
Q Consensus 69 ------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--------- 127 (178)
.....+|-.+--+..+.++++.+.+.|..-..-.+ -+...||.+-.+|.+.++-.+|.
T Consensus 504 ~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 504 ADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred HHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 11122333333344566778888888877766542 24677999999999999888887
Q ss_pred --cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCChhHHHHHHh
Q 036068 128 --KDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAYVGVLS 173 (178)
Q Consensus 128 --~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~t~~~li~ 173 (178)
.+...|...+-...+.|.++.|.+.+.+|.+.. -.-|...-..++.
T Consensus 583 n~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~ 631 (777)
T KOG1128|consen 583 NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVR 631 (777)
T ss_pred CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHH
Confidence 467778888888899999999999999987631 1225444444443
No 112
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.55 E-value=0.0025 Score=42.56 Aligned_cols=90 Identities=12% Similarity=-0.100 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCC--cHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHH
Q 036068 37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG--DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALI 114 (178)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 114 (178)
...|..+...+...|++++|...|++.......+ ...++..+-..+...|++++|...++...+.... ...++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence 3344555555555566666666666654432111 1234555555566666666666666555544221 233344444
Q ss_pred HHHH-------hcCChhhhc
Q 036068 115 DMYC-------ICADVEKAQ 127 (178)
Q Consensus 115 ~~~~-------~~~~~~~a~ 127 (178)
..|. +.|+++.|.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~ 133 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAE 133 (168)
T ss_pred HHHHHhhHHHHHcccHHHHH
Confidence 4444 555555443
No 113
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.55 E-value=0.0012 Score=47.44 Aligned_cols=102 Identities=11% Similarity=0.119 Sum_probs=73.1
Q ss_pred CCcHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhc
Q 036068 69 MGDEFTIVSILTARAN-----LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAIS 143 (178)
Q Consensus 69 ~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~ 143 (178)
+.|..+|.+.+..+.. .++.+-....++.|.+.|++.|..+|+.|+..+=|-.-. ....+...+..|=+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi-----P~nvfQ~~F~HYP~- 137 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI-----PQNVFQKVFLHYPQ- 137 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc-----cHHHHHHHHhhCch-
Confidence 4566677777666643 356666677778888888888888888888876543222 22334444444443
Q ss_pred CChhHHHHHHHHHHHcCCCCChhHHHHHHhhhhc
Q 036068 144 GNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177 (178)
Q Consensus 144 ~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~ 177 (178)
+-+.+..++++|...|+.||-++-..|+.+|++
T Consensus 138 -QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr 170 (406)
T KOG3941|consen 138 -QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGR 170 (406)
T ss_pred -hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcc
Confidence 345788999999999999999999999999875
No 114
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.0047 Score=43.92 Aligned_cols=140 Identities=16% Similarity=0.126 Sum_probs=86.0
Q ss_pred HHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh----ccccch
Q 036068 13 VSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR----ANLRAL 88 (178)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~----~~~~~~ 88 (178)
...|.+.|++++|....+.. -+......=+..+.+..+.+-|...+++|..-. +..|.+-|.+++ ...+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLG--ENLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhh
Confidence 44577788888888888772 234444344445556667778887778776642 445655454444 344567
Q ss_pred hhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCCh-hHHHHHHHHH
Q 036068 89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNG-DKALDMFSQM 156 (178)
Q Consensus 89 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~-~~a~~~~~~m 156 (178)
.+|.-+|++|.+. ..|++.+.+...-++...|++++|. .++.+.-.+|..-...|.. +...+.+.++
T Consensus 190 qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 190 QDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred hhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 7888888888653 4567777777777777777777776 3444444444444444443 3344455555
Q ss_pred HH
Q 036068 157 LR 158 (178)
Q Consensus 157 ~~ 158 (178)
..
T Consensus 269 k~ 270 (299)
T KOG3081|consen 269 KL 270 (299)
T ss_pred Hh
Confidence 43
No 115
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.52 E-value=0.01 Score=39.05 Aligned_cols=110 Identities=12% Similarity=-0.012 Sum_probs=78.3
Q ss_pred HHHhccCC-CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcc
Q 036068 26 RQCFDQMP-ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVK 104 (178)
Q Consensus 26 ~~~~~~m~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 104 (178)
+..+..+. +.+....-.+-.-+...|++++|.++|+.+.... .-+..-|-.|--++-..|++++|...|.......+
T Consensus 23 l~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~- 100 (157)
T PRK15363 23 LRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI- 100 (157)
T ss_pred HHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-
Confidence 44455555 5555555556666778899999999999988765 22455666677777788999999999998888774
Q ss_pred cchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHH
Q 036068 105 NDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGL 140 (178)
Q Consensus 105 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~ 140 (178)
-++..+-.+-.++.+.|+.+.| ...|...|..|
T Consensus 101 ddp~~~~~ag~c~L~lG~~~~A---~~aF~~Ai~~~ 133 (157)
T PRK15363 101 DAPQAPWAAAECYLACDNVCYA---IKALKAVVRIC 133 (157)
T ss_pred CCchHHHHHHHHHHHcCCHHHH---HHHHHHHHHHh
Confidence 4677777777777777777765 44555555555
No 116
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.52 E-value=0.011 Score=49.41 Aligned_cols=150 Identities=11% Similarity=0.043 Sum_probs=109.4
Q ss_pred CcchhHHHHHHHHHHhcCChhHHHHHhccCCC--CChh-HHHHHHHHHhhcCChhHHHHH------------------HH
Q 036068 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPE--RDYV-LWTAMIDGYLRVNRFREALTL------------------FQ 61 (178)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~-~~~~li~~~~~~~~~~~a~~~------------------~~ 61 (178)
+.+...|..|+..+.+.+++++|.++.+.-.+ |+.. .|-.+-..+.+.++.+.+..+ .+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~ 107 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICD 107 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHH
Confidence 46677899999999999999999999986543 3222 222222244444444444333 33
Q ss_pred HhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHH
Q 036068 62 EMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLA 141 (178)
Q Consensus 62 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~ 141 (178)
.|...+ -+...+-.+..+|-+.|+.+++..+|+++.+.. +-++.+.|.+-..|... +.++| ...+...+..+.
T Consensus 108 ~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA---~~m~~KAV~~~i 180 (906)
T PRK14720 108 KILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA---ITYLKKAIYRFI 180 (906)
T ss_pred HHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH---HHHHHHHHHHHH
Confidence 333321 233567778888899999999999999999988 45799999999999999 88877 455666677788
Q ss_pred hcCChhHHHHHHHHHHHc
Q 036068 142 ISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 142 ~~~~~~~a~~~~~~m~~~ 159 (178)
..+++.++.+++.++.+.
T Consensus 181 ~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred hhhcchHHHHHHHHHHhc
Confidence 888999999999999875
No 117
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.52 E-value=0.0027 Score=47.75 Aligned_cols=81 Identities=9% Similarity=-0.113 Sum_probs=64.4
Q ss_pred HHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChh
Q 036068 45 DGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124 (178)
Q Consensus 45 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 124 (178)
..+...|++++|.+.|++..+.. .-+...|..+..++.+.|++++|...++...+.... +...|..+-.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHH
Confidence 45567788999999999988765 335677778888888999999999999888887643 5667778888888899998
Q ss_pred hhc
Q 036068 125 KAQ 127 (178)
Q Consensus 125 ~a~ 127 (178)
+|.
T Consensus 88 eA~ 90 (356)
T PLN03088 88 TAK 90 (356)
T ss_pred HHH
Confidence 887
No 118
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.51 E-value=0.00039 Score=38.87 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=34.9
Q ss_pred hhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhC
Q 036068 48 LRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK 102 (178)
Q Consensus 48 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 102 (178)
.+.|++++|.+.|++..... +-+......+..+|.+.|++++|..+++.+....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 35567777777777766653 2255566667777777777777777777666654
No 119
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.46 E-value=0.0094 Score=39.93 Aligned_cols=118 Identities=14% Similarity=0.050 Sum_probs=84.0
Q ss_pred ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc--HHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHH
Q 036068 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD--EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNAL 113 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 113 (178)
....+..+-..+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+....+.... +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 556778888889999999999999999876543322 467888889999999999999999988886533 45666777
Q ss_pred HHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 036068 114 IDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165 (178)
Q Consensus 114 l~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 165 (178)
...|...|+...+..+... ....+++|.+++++..+. .|+.
T Consensus 113 g~~~~~~g~~~~a~~~~~~---------A~~~~~~A~~~~~~a~~~--~p~~ 153 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDE---------AEALFDKAAEYWKQAIRL--APNN 153 (172)
T ss_pred HHHHHHcCChHhHhhCHHH---------HHHHHHHHHHHHHHHHhh--Cchh
Confidence 7778887776655432110 112356677777776653 3543
No 120
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.44 E-value=0.00094 Score=39.12 Aligned_cols=81 Identities=7% Similarity=0.016 Sum_probs=53.4
Q ss_pred cCChhHHHHHHHHhHhCCCC-CcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhcc
Q 036068 50 VNRFREALTLFQEMQTSNIM-GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128 (178)
Q Consensus 50 ~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 128 (178)
.|+++.|..+++++.+..-. ++...+..+..++.+.|++++|..+++. .+.+... ...
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-~~~------------------- 60 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-PDI------------------- 60 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-HHH-------------------
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-HHH-------------------
Confidence 57899999999999887431 2455566688999999999999999988 3222211 111
Q ss_pred chhhHHHHHHHHHhcCChhHHHHHHHH
Q 036068 129 DKFSWTTMIVGLAISGNGDKALDMFSQ 155 (178)
Q Consensus 129 ~~~~~~~li~~~~~~~~~~~a~~~~~~ 155 (178)
.-.+..++.+.|++++|.+++++
T Consensus 61 ----~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 61 ----HYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp ----HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred ----HHHHHHHHHHhCCHHHHHHHHhc
Confidence 11234566677777777777664
No 121
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.43 E-value=0.0015 Score=42.45 Aligned_cols=106 Identities=15% Similarity=0.083 Sum_probs=70.3
Q ss_pred chhHHHHHHH---HHHhcCChhHHHHHhccCCC-------C------------------ChhHHHHHHHHHhhcCChhHH
Q 036068 5 DVISWTAIVS---RYINRGQVDIARQCFDQMPE-------R------------------DYVLWTAMIDGYLRVNRFREA 56 (178)
Q Consensus 5 ~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~-------~------------------~~~~~~~li~~~~~~~~~~~a 56 (178)
|+..|..++. .....|+.+.+.+.+++... + -......++..+...|++++|
T Consensus 2 D~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 2 DVDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence 3444555533 33556777777666665532 0 222355567777789999999
Q ss_pred HHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHH-----HhCcccchHHHH
Q 036068 57 LTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYID-----KNKVKNDIFAGN 111 (178)
Q Consensus 57 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-----~~~~~~~~~~~~ 111 (178)
....++..... +.+...|..+|.++.+.|+...|.+.|+.+. +.|++|++.+-.
T Consensus 82 ~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 82 LRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 99999998876 5578899999999999999999999998764 468999877643
No 122
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.40 E-value=0.0024 Score=40.56 Aligned_cols=95 Identities=13% Similarity=0.023 Sum_probs=60.2
Q ss_pred cHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHH
Q 036068 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKAL 150 (178)
Q Consensus 71 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~ 150 (178)
|..++.++|.++++.|+.+....+++.. -|+..+...-..- ...-....|+..+..+++.+|+..|++..|+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~--WgI~~~~~~~~~~------~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al 72 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV--WGIDVNGKKKEGD------YPPSSPLYPTSRLLIAIVHSFGYNGDIFSAL 72 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh--cCCCCCCccccCc------cCCCCCCCCCHHHHHHHHHHHHhcccHHHHH
Confidence 4567777888888888887777776533 2332221100000 1111112277888888888888888888888
Q ss_pred HHHHHHHHc-CCCCChhHHHHHHh
Q 036068 151 DMFSQMLRA-SIKPDEVAYVGVLS 173 (178)
Q Consensus 151 ~~~~~m~~~-g~~p~~~t~~~li~ 173 (178)
++.+...+. +++.+..++..|++
T Consensus 73 ~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 73 KLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHH
Confidence 888888764 77777777777765
No 123
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.40 E-value=0.0013 Score=36.44 Aligned_cols=58 Identities=7% Similarity=-0.055 Sum_probs=41.5
Q ss_pred HHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhC
Q 036068 44 IDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK 102 (178)
Q Consensus 44 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 102 (178)
-..+.+.|++++|.+.|++..+.. +-+...+..+-.++.+.|++++|...++...+..
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 345677788888888888877765 2356677777777778888888888887776654
No 124
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.40 E-value=0.017 Score=49.79 Aligned_cols=135 Identities=12% Similarity=0.044 Sum_probs=78.9
Q ss_pred HHHHHhccCC-CC-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC-CC-----CC-------------------------
Q 036068 24 IARQCFDQMP-ER-DYVLWTAMIDGYLRVNRFREALTLFQEMQTS-NI-----MG------------------------- 70 (178)
Q Consensus 24 ~a~~~~~~m~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~-----~~------------------------- 70 (178)
.|.++-+..+ +| ....|-.-|....+.++.++|.++.++.+.. +. ..
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 3444444444 34 3445666777777777888887777776432 00 00
Q ss_pred ------cHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------c---chh
Q 036068 71 ------DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------K---DKF 131 (178)
Q Consensus 71 ------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~---~~~ 131 (178)
....|..|...|.+.+++++|.++++.|.+.- .....+|......+.+.++-+.|. | .+.
T Consensus 1523 Acqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1523 ACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred HHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 11234445555666666777777777776542 245667777777777777655554 2 333
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 132 SWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 132 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
.-...+..-.+.|+.+.+..+|+..+..
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~a 1629 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSA 1629 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhh
Confidence 4444555556677777777777766653
No 125
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.39 E-value=0.033 Score=44.04 Aligned_cols=68 Identities=18% Similarity=0.221 Sum_probs=47.3
Q ss_pred HHHHHhcCChhHHHHHhccCCC--CChh-HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHH-HHHHHh
Q 036068 13 VSRYINRGQVDIARQCFDQMPE--RDYV-LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIV-SILTAR 82 (178)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~~~ 82 (178)
...+...|++++|++.+++-.+ .|.. .....-..+.+.|+.++|..+|..+.+.+ |+-..|- .+..+.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHH
Confidence 3455688999999999987654 3444 44455667888999999999999998886 4444443 444443
No 126
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.38 E-value=0.011 Score=39.46 Aligned_cols=88 Identities=8% Similarity=-0.107 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCC--C----ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPE--R----DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 81 (178)
.|..+...+...|++++|...|++... + ...+|..+-..+...|+.++|...+++..+.. +....++..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 455556666666777777766665531 1 12355566666666677777777776665542 2223445555555
Q ss_pred hc-------cccchhhHHHHHH
Q 036068 82 RA-------NLRALDLGEWIKT 96 (178)
Q Consensus 82 ~~-------~~~~~~~a~~~~~ 96 (178)
+. +.|+++.|...++
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHH
Confidence 55 5556655544443
No 127
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.36 E-value=0.0031 Score=50.48 Aligned_cols=146 Identities=11% Similarity=0.089 Sum_probs=109.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccc
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRA 87 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 87 (178)
.=-.+...+.+.|-...|..+|++. ..|.-+|..|...|+-++|..+..+..++ +||..-|..+.+......-
T Consensus 400 ~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHH
Confidence 3345678888999999999999975 45777888899999999999988887773 7899999999998888877
Q ss_pred hhhHHHHHHHHHHh-----Cc----------------------ccchHHHHHHHHHHHhcCChhhhc----------c-c
Q 036068 88 LDLGEWIKTYIDKN-----KV----------------------KNDIFAGNALIDMYCICADVEKAQ----------K-D 129 (178)
Q Consensus 88 ~~~a~~~~~~m~~~-----~~----------------------~~~~~~~~~ll~~~~~~~~~~~a~----------~-~ 129 (178)
+++|.++.+....+ |. +....+|-.+=.+..+.++++.+. | +
T Consensus 473 yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~ 552 (777)
T KOG1128|consen 473 YEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN 552 (777)
T ss_pred HHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc
Confidence 88888877654322 00 011223333333334455555554 3 6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 036068 130 KFSWTTMIVGLAISGNGDKALDMFSQMLRAS 160 (178)
Q Consensus 130 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 160 (178)
...||.+-.+|.+.++-.+|...+.+..+.+
T Consensus 553 ~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 553 AEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 8899999999999999999999999998865
No 128
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.35 E-value=0.0013 Score=47.84 Aligned_cols=108 Identities=15% Similarity=0.176 Sum_probs=76.5
Q ss_pred hHHHHHHHH-HHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcH---HHHHHHH
Q 036068 7 ISWTAIVSR-YINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDE---FTIVSIL 79 (178)
Q Consensus 7 ~~~~~li~~-~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll 79 (178)
.+|-..... +...++.+.|..+|+...+ .+...|..-+..+.+.++.+.|..+|++.... +.++. ..|..++
T Consensus 36 ~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i 114 (280)
T PF05843_consen 36 HVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFI 114 (280)
T ss_dssp HHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHH
Confidence 344433333 2236777779999998765 48888999999999999999999999998765 33332 4888899
Q ss_pred HHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHH
Q 036068 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117 (178)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 117 (178)
+.=.+.|+++.+..+.+++.+.- |+......+++-|
T Consensus 115 ~fE~~~Gdl~~v~~v~~R~~~~~--~~~~~~~~f~~ry 150 (280)
T PF05843_consen 115 EFESKYGDLESVRKVEKRAEELF--PEDNSLELFSDRY 150 (280)
T ss_dssp HHHHHHS-HHHHHHHHHHHHHHT--TTS-HHHHHHCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHh--hhhhHHHHHHHHh
Confidence 88889999999999999988863 3444555555555
No 129
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.0036 Score=44.46 Aligned_cols=113 Identities=12% Similarity=0.130 Sum_probs=89.8
Q ss_pred HHHHHhcCChhHHHHHhccCCCC-ChhHHHHHHHHHh----hcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccc
Q 036068 13 VSRYINRGQVDIARQCFDQMPER-DYVLWTAMIDGYL----RVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRA 87 (178)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 87 (178)
+..+.+..+++.|...+++|.+- +..|.+-|-.++. ..+...+|+-+|++|.++ ..|+..+.+-..-++...++
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 56677889999999999999985 4445554555555 446789999999999764 47899999999999999999
Q ss_pred hhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 88 LDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 88 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
+++|+.+++........ ++.+...+|-.-...|...++.
T Consensus 223 ~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred HHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHH
Confidence 99999999999887654 5777777777777777665443
No 130
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.31 E-value=0.0022 Score=35.85 Aligned_cols=65 Identities=12% Similarity=0.059 Sum_probs=45.3
Q ss_pred ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcccc-chhhHHHHHHHHHHh
Q 036068 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLR-ALDLGEWIKTYIDKN 101 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~ 101 (178)
+...|..+-..+...|++++|...|++..+.. +-+...|..+-.++.+.| ++++|.+.++...+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 44566777777777777777777777776654 235667777777777777 677777777766553
No 131
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.31 E-value=0.00053 Score=38.28 Aligned_cols=60 Identities=15% Similarity=0.257 Sum_probs=48.5
Q ss_pred HhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHH
Q 036068 17 INRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSI 78 (178)
Q Consensus 17 ~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 78 (178)
.+.|++++|.++|+++.+ | +...+-.+...|.+.|++++|.++++++.... |+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~--~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD--PDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG--TTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCHHHHHHH
Confidence 578999999999999853 4 77788889999999999999999999998874 664554444
No 132
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.31 E-value=0.022 Score=45.44 Aligned_cols=164 Identities=14% Similarity=0.149 Sum_probs=117.1
Q ss_pred hHHHHHHHHHHhcCChhHHHHHhccCCC--C---ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068 7 ISWTAIVSRYINRGQVDIARQCFDQMPE--R---DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81 (178)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~--~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 81 (178)
..|-.-+....++|++......|+.... | -...|...+......+.++-+..++++-++. .|. .-.-.|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~--~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APE--AREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHH--HHHHHHHH
Confidence 3455566667777777777777775432 1 3346778888888888888999999988775 243 36778888
Q ss_pred hccccchhhHHHHHHHHHH------hCcccchHHHHHHHHHHHhcCChhhhc-------------c--chhhHHHHHHHH
Q 036068 82 RANLRALDLGEWIKTYIDK------NKVKNDIFAGNALIDMYCICADVEKAQ-------------K--DKFSWTTMIVGL 140 (178)
Q Consensus 82 ~~~~~~~~~a~~~~~~m~~------~~~~~~~~~~~~ll~~~~~~~~~~~a~-------------~--~~~~~~~li~~~ 140 (178)
+++.+++++|.+-+..... ..-+.+-..|.-+.+...++-+.-... + -...|..|.+-|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 8999999999888876542 122455667777777777654433322 2 357899999999
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhhh
Q 036068 141 AISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176 (178)
Q Consensus 141 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~ 176 (178)
.+.|++++|..+|++-... ..+..-|..+.++|+
T Consensus 259 Ir~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYA 292 (835)
T ss_pred HHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHH
Confidence 9999999999999998765 345555666666665
No 133
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.26 E-value=0.0014 Score=42.62 Aligned_cols=68 Identities=13% Similarity=0.161 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhH-----hCCCCCcHHHH
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQ-----TSNIMGDEFTI 75 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~-----~~~~~~~~~~~ 75 (178)
....++..+...|++++|..+.+.+.. | |...|..+|.+|...|+..+|.+.|+++. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 456677788889999999999998864 4 78899999999999999999999999974 35999998764
No 134
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.24 E-value=0.035 Score=42.90 Aligned_cols=136 Identities=14% Similarity=0.144 Sum_probs=75.9
Q ss_pred cCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcH-HHHHHHHHHhccccchhhHHHH
Q 036068 19 RGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDE-FTIVSILTARANLRALDLGEWI 94 (178)
Q Consensus 19 ~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~ 94 (178)
.++++.|.++|+.... .++..|---+..=.++..+..|..+|++.... -|-+ ..|-..+..=-..|+...|.++
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4556667777776553 35555555555555666666666666665443 2222 2233333333445566666666
Q ss_pred HHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 95 KTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 95 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
|+.-.+ .+|+...|.+.|..-.+-...+.|. |++.+|--...--.++|....|..+|.+..+
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie 235 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIE 235 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 655543 3556666666666555555555554 5555555555555566666666666665554
No 135
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.21 E-value=0.011 Score=39.71 Aligned_cols=81 Identities=11% Similarity=0.029 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCC--CC----hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHH
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMPE--RD----YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 79 (178)
...|..+...+.+.|++++|...|++..+ ++ ...+..+...+.+.|++++|...+++..+.. +-+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 34577788889999999999999998752 22 3578888899999999999999999988753 22455666666
Q ss_pred HHhccccc
Q 036068 80 TARANLRA 87 (178)
Q Consensus 80 ~~~~~~~~ 87 (178)
.++...|+
T Consensus 114 ~~~~~~g~ 121 (172)
T PRK02603 114 VIYHKRGE 121 (172)
T ss_pred HHHHHcCC
Confidence 66766655
No 136
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.20 E-value=0.0069 Score=39.80 Aligned_cols=93 Identities=6% Similarity=0.014 Sum_probs=77.6
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCC--CC-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccc
Q 036068 9 WTAIVSRYINRGQVDIARQCFDQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL 85 (178)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 85 (178)
.-.+-..+...|++++|.++|+.+- .| +..-|-.|--.+-..|++++|+..|.+...... -|...+-.+-.++...
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 3346667788999999999999875 34 666777788888899999999999999888774 4788888899999999
Q ss_pred cchhhHHHHHHHHHHhC
Q 036068 86 RALDLGEWIKTYIDKNK 102 (178)
Q Consensus 86 ~~~~~a~~~~~~m~~~~ 102 (178)
|+.+.|.+.|+..+...
T Consensus 117 G~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 117 DNVCYAIKALKAVVRIC 133 (157)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999998776543
No 137
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.19 E-value=0.0076 Score=43.42 Aligned_cols=102 Identities=12% Similarity=0.072 Sum_probs=80.6
Q ss_pred HHHHhccCC--CCChhHHHHHHHHHhh-----cCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccch---------
Q 036068 25 ARQCFDQMP--ERDYVLWTAMIDGYLR-----VNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL--------- 88 (178)
Q Consensus 25 a~~~~~~m~--~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~--------- 88 (178)
....|...+ ++|-.+|-..+..+.. .+.++-....++.|.+.|+..|..+|+.||+.+-+..-.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 344555555 5688888888887764 356788888899999999999999999999988765421
Q ss_pred -------hhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhh
Q 036068 89 -------DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126 (178)
Q Consensus 89 -------~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 126 (178)
+=+..++++|...|+.||-.+-..++..+++.+-.-.-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K 177 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKK 177 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHH
Confidence 23678899999999999999999999999988765443
No 138
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.16 E-value=0.007 Score=43.55 Aligned_cols=97 Identities=8% Similarity=-0.031 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCC--CCh----hHHHHHHHHHhhcCChhHHHHHHHHhHhCC--CCCcHHHHHHHH
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPE--RDY----VLWTAMIDGYLRVNRFREALTLFQEMQTSN--IMGDEFTIVSIL 79 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll 79 (178)
.|...+..+.+.|++++|...|+.+.+ |+. ..+--+-..|...|++++|...|+.+.+.- -......+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 466656555677888888888888764 432 355567778888888888888888887542 111234444556
Q ss_pred HHhccccchhhHHHHHHHHHHhCcc
Q 036068 80 TARANLRALDLGEWIKTYIDKNKVK 104 (178)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~m~~~~~~ 104 (178)
.++.+.|+.++|..+|+.+.+..+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 6677888888888888888876543
No 139
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.033 Score=46.89 Aligned_cols=84 Identities=14% Similarity=0.125 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcccc
Q 036068 7 ISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLR 86 (178)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 86 (178)
.+|+.+..+-.+.|.+.+|.+-|-+. .|+..|..+++...+.|.|++-.+.+.-.++..-.|.+.+ .+|.+|++.+
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~ 1180 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTN 1180 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhc
Confidence 35666666666666666665554332 3445566666666666666666665544444444444433 4566666666
Q ss_pred chhhHHHH
Q 036068 87 ALDLGEWI 94 (178)
Q Consensus 87 ~~~~a~~~ 94 (178)
+..+.+++
T Consensus 1181 rl~elE~f 1188 (1666)
T KOG0985|consen 1181 RLTELEEF 1188 (1666)
T ss_pred hHHHHHHH
Confidence 55554444
No 140
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.14 E-value=0.024 Score=35.67 Aligned_cols=58 Identities=14% Similarity=0.109 Sum_probs=43.3
Q ss_pred HHHhhcCChhHHHHHHHHhHhCCCCCc--HHHHHHHHHHhccccchhhHHHHHHHHHHhC
Q 036068 45 DGYLRVNRFREALTLFQEMQTSNIMGD--EFTIVSILTARANLRALDLGEWIKTYIDKNK 102 (178)
Q Consensus 45 ~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 102 (178)
.++-..|+.++|..+|++-...|.... ...+-.+-..+...|++++|..+++......
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~ 68 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF 68 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 455667888888888888888776544 3455566777888888888888888777653
No 141
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.14 E-value=0.059 Score=41.72 Aligned_cols=161 Identities=11% Similarity=0.139 Sum_probs=81.5
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCC--CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhC-CC-CCcHHHHHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMP--ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTS-NI-MGDEFTIVSIL 79 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~-~~~~~~~~~ll 79 (178)
|+...|++.|+.=.+-..++.|.++++... .|++.+|---...=.++|.+..|.++|....+. |- ..+...+.++.
T Consensus 172 P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA 251 (677)
T KOG1915|consen 172 PDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFA 251 (677)
T ss_pred CcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444455555555555555555555554432 344444444444444445544454444443221 10 00111222222
Q ss_pred HHhccccchhhHHHHHHHHHHhCccc-chHHHHHHHHHHHhcCChhhhc-------------------cchhhHHHHHHH
Q 036068 80 TARANLRALDLGEWIKTYIDKNKVKN-DIFAGNALIDMYCICADVEKAQ-------------------KDKFSWTTMIVG 139 (178)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~-------------------~~~~~~~~li~~ 139 (178)
..=.++..++.|.-+|+..++.=++. ....|...+..--+.|+..... -|..+|--.++.
T Consensus 252 ~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL 331 (677)
T KOG1915|consen 252 EFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRL 331 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHH
Confidence 22223334445555554444432111 1344444444444455544433 377788888888
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCh
Q 036068 140 LAISGNGDKALDMFSQMLRASIKPDE 165 (178)
Q Consensus 140 ~~~~~~~~~a~~~~~~m~~~g~~p~~ 165 (178)
-...|+.+...++|++.+. +++|-.
T Consensus 332 ~e~~g~~~~Ire~yErAIa-nvpp~~ 356 (677)
T KOG1915|consen 332 EESVGDKDRIRETYERAIA-NVPPAS 356 (677)
T ss_pred HHhcCCHHHHHHHHHHHHc-cCCchh
Confidence 8889999999999999886 677743
No 142
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.11 E-value=0.025 Score=46.96 Aligned_cols=98 Identities=7% Similarity=0.083 Sum_probs=48.4
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCCCC------hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERD------YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVS 77 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 77 (178)
.++...+.|...|.-.|++..++.+...+...+ ...|--+-++|=..|++++|...|.+-....-.--...+.-
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 345555566666666666666666655554321 11233445555555666666655555433321111223333
Q ss_pred HHHHhccccchhhHHHHHHHHHHh
Q 036068 78 ILTARANLRALDLGEWIKTYIDKN 101 (178)
Q Consensus 78 ll~~~~~~~~~~~a~~~~~~m~~~ 101 (178)
+-+.+.+.|+++.+...|+.+.+.
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~ 371 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQ 371 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHh
Confidence 444555555555555555555544
No 143
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.11 E-value=0.1 Score=42.01 Aligned_cols=158 Identities=13% Similarity=0.065 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhc
Q 036068 7 ISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARA 83 (178)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 83 (178)
.+|..-...|.+.+.++-|..+|....+ .+...|......=-..|..++...+|++....- +-...-|....+-+-
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKW 595 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHH
Confidence 3566667777777777777777776654 255566666666556677777778888877663 223345555566667
Q ss_pred cccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cchhhHHHHHHHHHhcCChhHHHHHH
Q 036068 84 NLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KDKFSWTTMIVGLAISGNGDKALDMF 153 (178)
Q Consensus 84 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~~~~~~~li~~~~~~~~~~~a~~~~ 153 (178)
..|+...|..++....+.... +...|-..+..-+.+.+++.|. ++...|-.-+..--..+..++|++++
T Consensus 596 ~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rll 674 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLL 674 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence 778888888888877776644 6777777777777777777775 56666666666666677778888877
Q ss_pred HHHHHcCCCCChhHH
Q 036068 154 SQMLRASIKPDEVAY 168 (178)
Q Consensus 154 ~~m~~~g~~p~~~t~ 168 (178)
++.++. .|+..-+
T Consensus 675 Ee~lk~--fp~f~Kl 687 (913)
T KOG0495|consen 675 EEALKS--FPDFHKL 687 (913)
T ss_pred HHHHHh--CCchHHH
Confidence 776653 5655433
No 144
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.11 E-value=0.073 Score=40.19 Aligned_cols=152 Identities=13% Similarity=0.111 Sum_probs=94.2
Q ss_pred HHHHHHHhcCChhHHHHHhccCCCC-------ChhHHHHHHHHHhh---cCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068 11 AIVSRYINRGQVDIARQCFDQMPER-------DYVLWTAMIDGYLR---VNRFREALTLFQEMQTSNIMGDEFTIVSILT 80 (178)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 80 (178)
.++-+|-...+++.+.++++.++.. ....--...-++.+ .|+-++|.+++..+....-.++..||..+-+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555788999999999999999863 11111122234445 7999999999999766666788889988877
Q ss_pred Hhccc---------cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCC-hhhhc----------------------c
Q 036068 81 ARANL---------RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD-VEKAQ----------------------K 128 (178)
Q Consensus 81 ~~~~~---------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~----------------------~ 128 (178)
.|... ...++|...|..--+. .|+...--.+.-.+...|. .+... .
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 76322 2345566655433221 2222111111112222222 11110 3
Q ss_pred chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 036068 129 DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165 (178)
Q Consensus 129 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 165 (178)
|.=.+.+++.+.+-.|+.++|.+.+++|.+.. +|.-
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~-~~~W 339 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLK-PPAW 339 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-Ccch
Confidence 44455788899999999999999999999763 4443
No 145
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.08 E-value=0.0052 Score=44.31 Aligned_cols=89 Identities=12% Similarity=0.084 Sum_probs=74.3
Q ss_pred hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHH
Q 036068 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKAL 150 (178)
Q Consensus 82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~ 150 (178)
..+.+++++|.+.|...++..+ .+..-|..--.+|++.|+++.|. .-..+|..|-.+|...|++++|.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 3567889999999999988753 36777888899999999999988 24678889999999999999999
Q ss_pred HHHHHHHHcCCCCChhHHHHHHh
Q 036068 151 DMFSQMLRASIKPDEVAYVGVLS 173 (178)
Q Consensus 151 ~~~~~m~~~g~~p~~~t~~~li~ 173 (178)
+.|++.++ +.|+..+|..=|+
T Consensus 170 ~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 170 EAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHhhhc--cCCCcHHHHHHHH
Confidence 99999886 5899888876554
No 146
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.05 E-value=0.0017 Score=35.95 Aligned_cols=55 Identities=18% Similarity=0.279 Sum_probs=47.1
Q ss_pred HHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC
Q 036068 12 IVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTS 66 (178)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 66 (178)
+...+.+.|++++|.+.|++..+ | +...+..+-..+...|++++|...|++..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45678899999999999998875 3 6778888889999999999999999998765
No 147
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.04 E-value=0.011 Score=48.10 Aligned_cols=104 Identities=13% Similarity=0.055 Sum_probs=60.4
Q ss_pred HHHHHhcCChhHHHHHhccCCCCChh--HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhh
Q 036068 13 VSRYINRGQVDIARQCFDQMPERDYV--LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDL 90 (178)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 90 (178)
|.+-.....|.+|+.+++.++..++. -|..+...|+..|+++.|.++|.+- .-++-.|..|.+.|+++.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 44455566677777777776654333 3566666777777777777666542 123445566667777766
Q ss_pred HHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 91 GEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 91 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
|.++-.+. .|.+.....|-+-..-.-+.|.+.+|.
T Consensus 810 a~kla~e~--~~~e~t~~~yiakaedldehgkf~eae 844 (1636)
T KOG3616|consen 810 AFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAE 844 (1636)
T ss_pred HHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhh
Confidence 66654333 344444444544445555566666555
No 148
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.99 E-value=0.026 Score=40.36 Aligned_cols=165 Identities=11% Similarity=0.042 Sum_probs=111.7
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCC--C--------ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHH
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMPE--R--------DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTI 75 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 75 (178)
..-|++|++.+.-...+.+....++.=.. . -...-++++..+-..+++.-....+++..+..-+-+..-.
T Consensus 136 gnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~ 215 (366)
T KOG2796|consen 136 GNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLL 215 (366)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHH
Confidence 34466777777666666666555554332 1 2334556777777788888889999998887767777888
Q ss_pred HHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH-----HHHhcCChhhhc-----------cchhhHHHHHHH
Q 036068 76 VSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID-----MYCICADVEKAQ-----------KDKFSWTTMIVG 139 (178)
Q Consensus 76 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~-----~~~~~~~~~~a~-----------~~~~~~~~li~~ 139 (178)
..+.+.-.+.||.+.|...++...+..-..+..+.+.++. .|.-.+++..+. .|...-|.=.-.
T Consensus 216 s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc 295 (366)
T KOG2796|consen 216 SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC 295 (366)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence 8888889999999999999998877655555555555543 233344444443 245555554555
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCChhHHHHHH
Q 036068 140 LAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172 (178)
Q Consensus 140 ~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 172 (178)
..-.|+...|+...+.|++. .|...+-++++
T Consensus 296 llYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 296 LLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred HHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 55678999999999999864 56665555443
No 149
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.98 E-value=0.0046 Score=34.92 Aligned_cols=58 Identities=12% Similarity=-0.013 Sum_probs=41.9
Q ss_pred HHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCc
Q 036068 45 DGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV 103 (178)
Q Consensus 45 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 103 (178)
..|.+.+++++|.++++++...+ +.+...+...-.++.+.|++++|.+.++...+.++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 45677778888888888877764 33556666677777788888888888877776654
No 150
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.049 Score=43.02 Aligned_cols=84 Identities=14% Similarity=0.098 Sum_probs=50.4
Q ss_pred HHHHHHHHhccccchhhHHHHHHHHHHhCccc-chHHHHHHHHHHHh-cCChhhhcc--chhhHHHHH---HHHHhcCCh
Q 036068 74 TIVSILTARANLRALDLGEWIKTYIDKNKVKN-DIFAGNALIDMYCI-CADVEKAQK--DKFSWTTMI---VGLAISGNG 146 (178)
Q Consensus 74 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~-~~~~~~a~~--~~~~~~~li---~~~~~~~~~ 146 (178)
+...-.+.|-+.+++++|..+|+.+.+.+.+- +...-..++..-.. .+++....| ...+|..+. ..+...|++
T Consensus 112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky 191 (652)
T KOG2376|consen 112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY 191 (652)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence 44444566788899999999999998876532 22222222222111 121233332 234555554 445678999
Q ss_pred hHHHHHHHHHH
Q 036068 147 DKALDMFSQML 157 (178)
Q Consensus 147 ~~a~~~~~~m~ 157 (178)
.+|.++++..+
T Consensus 192 ~qA~elL~kA~ 202 (652)
T KOG2376|consen 192 NQAIELLEKAL 202 (652)
T ss_pred HHHHHHHHHHH
Confidence 99999998883
No 151
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.96 E-value=0.0067 Score=49.20 Aligned_cols=97 Identities=16% Similarity=0.133 Sum_probs=63.4
Q ss_pred HHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhh
Q 036068 46 GYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK 125 (178)
Q Consensus 46 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 125 (178)
+-.....|.+|+.+++-+..++.. ..-|..+.+.|...|+++.|+++|.+ ...++-.|..|.+.|.|++
T Consensus 741 aai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e---------~~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTE---------ADLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHh---------cchhHHHHHHHhccccHHH
Confidence 334456677777777777665432 33566777888888888888888743 2235667888888888888
Q ss_pred hc----------cchhhHHHHHHHHHhcCChhHHHHHH
Q 036068 126 AQ----------KDKFSWTTMIVGLAISGNGDKALDMF 153 (178)
Q Consensus 126 a~----------~~~~~~~~li~~~~~~~~~~~a~~~~ 153 (178)
|. .....|-+-..-+-++|++.+|.++|
T Consensus 810 a~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 810 AFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 87 23444544445555666666665544
No 152
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.047 Score=46.01 Aligned_cols=106 Identities=11% Similarity=0.125 Sum_probs=79.0
Q ss_pred HHHHhcCChhHHHHHhccCCC-------------------------CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCC
Q 036068 14 SRYINRGQVDIARQCFDQMPE-------------------------RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI 68 (178)
Q Consensus 14 ~~~~~~~~~~~a~~~~~~m~~-------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 68 (178)
..+..++-+++|..+|++... .....|.-+-.+=.+.|.+.+|.+.|-+
T Consensus 1056 ~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik------ 1129 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK------ 1129 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh------
Confidence 445566667777777776542 1445677777777777777777765544
Q ss_pred CCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 69 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
.-|...|.-+++.+.+.|.+++-.+++....+..-+|.+ =+.+|-+|++.++..+..
T Consensus 1130 adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE 1186 (1666)
T KOG0985|consen 1130 ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELE 1186 (1666)
T ss_pred cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHH
Confidence 236678999999999999999999999888887766654 468999999999988876
No 153
>PLN02789 farnesyltranstransferase
Probab=96.92 E-value=0.081 Score=39.29 Aligned_cols=117 Identities=9% Similarity=-0.035 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCCC---ChhHHHHHHHHHhhcC-ChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068 9 WTAIVSRYINRGQVDIARQCFDQMPER---DYVLWTAMIDGYLRVN-RFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84 (178)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 84 (178)
+..+-..+...++.++|+.+.++..+. +..+|+.--..+.+.| +++++++.++++.+.+-+ +..+|+----.+.+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~ 118 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHH
Confidence 334444445555666666666655432 3333433333344444 356666666666554322 33344433222333
Q ss_pred ccc--hhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 85 LRA--LDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 85 ~~~--~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
.+. .+++..+++.+.+... -+.++|+..-..+.+.|+++++.
T Consensus 119 l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL 162 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDEL 162 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHH
Confidence 333 2445555555555443 24555555555555555555554
No 154
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.91 E-value=0.011 Score=33.94 Aligned_cols=70 Identities=9% Similarity=-0.103 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHH
Q 036068 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALD 151 (178)
Q Consensus 72 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~ 151 (178)
..+++.+-.+|.+.|++++|...++...+. .......... ...+++.+-..+...|++++|++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~----------------~a~~~~~lg~~~~~~g~~~~A~~ 67 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPD----------------TANTLNNLGECYYRLGDYEEALE 67 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHH----------------HHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHH----------------HHHHHHHHHHHHHHcCCHHHHHH
Confidence 357788888999999999999999877754 2111111111 13457778888889999999999
Q ss_pred HHHHHHH
Q 036068 152 MFSQMLR 158 (178)
Q Consensus 152 ~~~~m~~ 158 (178)
++++..+
T Consensus 68 ~~~~al~ 74 (78)
T PF13424_consen 68 YYQKALD 74 (78)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988654
No 155
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.014 Score=45.61 Aligned_cols=112 Identities=16% Similarity=0.109 Sum_probs=86.3
Q ss_pred HHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC------CCCCcHHHHHHHHHHhccc
Q 036068 15 RYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTS------NIMGDEFTIVSILTARANL 85 (178)
Q Consensus 15 ~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~~~~~ll~~~~~~ 85 (178)
-|.+.+++..|.++|.+... | |+...+.+--.....+.+.+|...|+.-+.. .......+++.|-.+|.+.
T Consensus 389 ey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 45566677777777776543 3 7777777777777788899999999886521 1123556788888999999
Q ss_pred cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 86 RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 86 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
+.+++|...++...... +.+..++.++--.|...|+++.|.
T Consensus 469 ~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Ai 509 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAI 509 (611)
T ss_pred hhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHH
Confidence 99999999998888765 457889999999999999999986
No 156
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.82 E-value=0.042 Score=40.09 Aligned_cols=85 Identities=12% Similarity=0.041 Sum_probs=52.0
Q ss_pred cCChhHHHHHhccCCC-CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHH
Q 036068 19 RGQVDIARQCFDQMPE-RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTY 97 (178)
Q Consensus 19 ~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 97 (178)
.+++..+..+.++.+. .+..+.+-.-....+.|+.+.|.+-|+...+-+---....|+..+- ..+.++++.|.++.++
T Consensus 125 e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSE 203 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISE 203 (459)
T ss_pred cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHH
Confidence 3344444444444442 2344444444455577888888888888766544444566665554 4456788888888888
Q ss_pred HHHhCcc
Q 036068 98 IDKNKVK 104 (178)
Q Consensus 98 m~~~~~~ 104 (178)
++++|+.
T Consensus 204 IieRG~r 210 (459)
T KOG4340|consen 204 IIERGIR 210 (459)
T ss_pred HHHhhhh
Confidence 8877653
No 157
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.82 E-value=0.1 Score=37.18 Aligned_cols=116 Identities=9% Similarity=-0.015 Sum_probs=61.3
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcH-HHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH
Q 036068 40 WTAMIDGYLRVNRFREALTLFQEMQTSNIMGDE-FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC 118 (178)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 118 (178)
|.-++-+....|+.+.|..+++++..+= |.. ..-..-.-.+-..|++++|.++++.+.+.. +.|..++--=+...-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 3334444555566666666666655442 221 111111111234456666666666666655 334444444444444
Q ss_pred hcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 119 ICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 119 ~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
..|...+|. .|...|.-+-.-|...|++++|-=.++++.-
T Consensus 132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 455554554 4666666666666666666666666666654
No 158
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.80 E-value=0.14 Score=40.70 Aligned_cols=130 Identities=14% Similarity=0.052 Sum_probs=82.7
Q ss_pred CChhHHHHHHHHHhhcC-----ChhHHHHHHHHhHhCCCCCc-HHHHHHHHHHhcccc--------chhhHHHHHHHHHH
Q 036068 35 RDYVLWTAMIDGYLRVN-----RFREALTLFQEMQTSNIMGD-EFTIVSILTARANLR--------ALDLGEWIKTYIDK 100 (178)
Q Consensus 35 ~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~--------~~~~a~~~~~~m~~ 100 (178)
.|...|...+++..... +.++|.++|++..+. .|+ ...|..+..++.... +...+.+.......
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 47788888888765432 267888888888776 355 233333333222111 12222333332222
Q ss_pred h-CcccchHHHHHHHHHHHhcCChhhhc----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHH
Q 036068 101 N-KVKNDIFAGNALIDMYCICADVEKAQ----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168 (178)
Q Consensus 101 ~-~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 168 (178)
. ....++..+.++--.+...|++++|. |+...|..+...+...|+.++|.+.|++.... .|...||
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~ 489 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTL 489 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchH
Confidence 2 12334567777766666778888887 67778888889999999999999999998753 4555444
No 159
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.76 E-value=0.0032 Score=35.17 Aligned_cols=62 Identities=16% Similarity=0.351 Sum_probs=53.6
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcC-ChhHHHHHHHHhHhC
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVN-RFREALTLFQEMQTS 66 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~ 66 (178)
++.+|..+-..+.+.|++++|+..|++..+ .+...|..+-.++.+.| ++++|.+.|++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 467899999999999999999999998763 37778888889999999 799999999987653
No 160
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.75 E-value=0.042 Score=39.60 Aligned_cols=104 Identities=18% Similarity=0.103 Sum_probs=71.4
Q ss_pred hHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcH----HHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHH
Q 036068 38 VLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDE----FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNAL 113 (178)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 113 (178)
..|...+..+.+.|++++|...|+.+.+.- |+. ..+--+-.++...|++++|...|+.+.+..+. ++....
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~-s~~~~d-- 218 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK-SPKAAD-- 218 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CcchhH--
Confidence 346666666667789999999999987753 332 35556778888899999999999888876432 222222
Q ss_pred HHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh
Q 036068 114 IDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 166 (178)
Q Consensus 114 l~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 166 (178)
.+-.+...+...|+.++|..+|++..+. .|+..
T Consensus 219 ------------------Al~klg~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 219 ------------------AMFKVGVIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred ------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 2223445566788888889888888765 45544
No 161
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.72 E-value=0.0051 Score=35.30 Aligned_cols=63 Identities=13% Similarity=0.066 Sum_probs=42.1
Q ss_pred hHHHHHHHHHhhcCChhHHHHHHHHhHhC----CC-CCc-HHHHHHHHHHhccccchhhHHHHHHHHHH
Q 036068 38 VLWTAMIDGYLRVNRFREALTLFQEMQTS----NI-MGD-EFTIVSILTARANLRALDLGEWIKTYIDK 100 (178)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 100 (178)
.+++.+-..|...|++++|++.|++.... |- .|. ..++..+-.++...|++++|.+.++...+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45667777777778888887777775432 21 122 55677777788888888888888776543
No 162
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.18 Score=38.47 Aligned_cols=120 Identities=9% Similarity=-0.027 Sum_probs=65.1
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCCCChh------HHHHHHHHHhhcCChhHHHHHHHHhHhCC----------
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYV------LWTAMIDGYLRVNRFREALTLFQEMQTSN---------- 67 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~------~~~~li~~~~~~~~~~~a~~~~~~m~~~~---------- 67 (178)
.|++....+.+.+...|+.++|...|++.+.-|+. .|..|+. +.|+.+....+...+....
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~---~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLG---QEGGCEQDSALMDYLFAKVKYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHH---hccCHhhHHHHHHHHHhhhhcchhhhhhh
Confidence 46777888889999999999999999987643222 2333332 2233333333322222110
Q ss_pred --------------------CCC---cHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChh
Q 036068 68 --------------------IMG---DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124 (178)
Q Consensus 68 --------------------~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 124 (178)
|.. +...|-.=-..+...++.++|.-.|+..+.-. +.+...|..|+.+|...|...
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHH
Confidence 111 11112111123445556666665555554433 235667777777777777777
Q ss_pred hhc
Q 036068 125 KAQ 127 (178)
Q Consensus 125 ~a~ 127 (178)
+|.
T Consensus 386 EA~ 388 (564)
T KOG1174|consen 386 EAN 388 (564)
T ss_pred HHH
Confidence 765
No 163
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.56 E-value=0.052 Score=35.13 Aligned_cols=81 Identities=7% Similarity=0.098 Sum_probs=58.5
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCCC------ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHH
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPER------DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSI 78 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 78 (178)
+...+-.-.....+.|++++|.+.|+.+... ....---|+.+|.+.+++++|...+++..+..-..--.-|...
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 3334344455666899999999999998752 4456667889999999999999999998887543333556666
Q ss_pred HHHhccc
Q 036068 79 LTARANL 85 (178)
Q Consensus 79 l~~~~~~ 85 (178)
+.+++.-
T Consensus 89 ~~gL~~~ 95 (142)
T PF13512_consen 89 MRGLSYY 95 (142)
T ss_pred HHHHHHH
Confidence 6665533
No 164
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=0.068 Score=41.48 Aligned_cols=148 Identities=10% Similarity=0.088 Sum_probs=104.8
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccc
Q 036068 9 WTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL 85 (178)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 85 (178)
|--+...|.+..+-.+....|++..+ .|..+|..--..+.-.+++++|..=|++-.+.. +-++..|-.+--+.-+.
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQ 441 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHH
Confidence 66677788888888888888887653 377777777777777788999998888877653 12334444444444577
Q ss_pred cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cc-------hhhH-HHHHHHHHhcCChh
Q 036068 86 RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KD-------KFSW-TTMIVGLAISGNGD 147 (178)
Q Consensus 86 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~-------~~~~-~~li~~~~~~~~~~ 147 (178)
++++++...|++.++.- +..+.+|+..-..+.-.+++++|. |+ ..++ +.-+..+.-.+++.
T Consensus 442 ~k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~ 520 (606)
T KOG0547|consen 442 HKIAESMKTFEEAKKKF-PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDIN 520 (606)
T ss_pred HHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHH
Confidence 88999999999988764 556889999999999999998887 11 1111 11111222448888
Q ss_pred HHHHHHHHHHH
Q 036068 148 KALDMFSQMLR 158 (178)
Q Consensus 148 ~a~~~~~~m~~ 158 (178)
.|.+++++..+
T Consensus 521 ~a~~Ll~KA~e 531 (606)
T KOG0547|consen 521 QAENLLRKAIE 531 (606)
T ss_pred HHHHHHHHHHc
Confidence 99999888775
No 165
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.53 E-value=0.057 Score=45.28 Aligned_cols=118 Identities=7% Similarity=0.018 Sum_probs=78.9
Q ss_pred hHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcc-----cchHHHHH
Q 036068 38 VLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVK-----NDIFAGNA 112 (178)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~~~~~~ 112 (178)
..+-.|..+|-+.|+.++|.++|+++.+.. +-|+.+.|.+.-.+... ++++|.+++....+.-+. .=...|..
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k 194 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSK 194 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence 456667778888899999999999998887 45788888888888888 888888888766554221 11111222
Q ss_pred HHHHHHhcCChhh-------------hccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 113 LIDMYCICADVEK-------------AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 113 ll~~~~~~~~~~~-------------a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
++..=. .+.+. -..-+.++-.+-..|-..++++++.++++.+++.
T Consensus 195 ~~~~~~--~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 195 LVHYNS--DDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH 252 (906)
T ss_pred HHhcCc--ccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence 221100 01111 0034556666777888888999999999999875
No 166
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.49 E-value=0.18 Score=35.93 Aligned_cols=62 Identities=11% Similarity=0.017 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCC--CChh-HH---HHHHHHHhhcCChhHHHHHHHHhHhCC
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMPE--RDYV-LW---TAMIDGYLRVNRFREALTLFQEMQTSN 67 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~-~~---~~li~~~~~~~~~~~a~~~~~~m~~~~ 67 (178)
...+-.....+.+.|++++|.+.|+++.. |+.. .- -.+..++.+.+++++|...+++..+..
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 33333345555667888888888887754 3221 11 234566677888888888888876653
No 167
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.48 E-value=0.16 Score=35.11 Aligned_cols=148 Identities=9% Similarity=0.040 Sum_probs=80.6
Q ss_pred CCcchhHHHHHHHHHHhcCChhHHHHHhccCCC--C----ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHH
Q 036068 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPE--R----DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTI 75 (178)
Q Consensus 2 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 75 (178)
|+-+...+-.....+.+.|++++|.+.|+++.. | -....-.+..++.+.|++++|...++++.+.--.....-+
T Consensus 1 p~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~ 80 (203)
T PF13525_consen 1 PEDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADY 80 (203)
T ss_dssp ----HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhh
Confidence 444555555567778889999999999999874 2 2334456778899999999999999998765311112222
Q ss_pred HHHHHHhc-------------cccchhhHHHHHHHHHHhCcccchHHHH---HHHHHHHhcCChhhhccchhhHHHHHHH
Q 036068 76 VSILTARA-------------NLRALDLGEWIKTYIDKNKVKNDIFAGN---ALIDMYCICADVEKAQKDKFSWTTMIVG 139 (178)
Q Consensus 76 ~~ll~~~~-------------~~~~~~~a~~~~~~m~~~~~~~~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~li~~ 139 (178)
...+.+.+ ..+...+|...|+.+++.-+.. ..+-. .+...--+....+ -.+..-
T Consensus 81 A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S-~y~~~A~~~l~~l~~~la~~e---------~~ia~~ 150 (203)
T PF13525_consen 81 ALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNS-EYAEEAKKRLAELRNRLAEHE---------LYIARF 150 (203)
T ss_dssp HHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTS-TTHHHHHHHHHHHHHHHHHHH---------HHHHHH
T ss_pred HHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCc-hHHHHHHHHHHHHHHHHHHHH---------HHHHHH
Confidence 22333222 1223456777777777664332 21111 1111111111111 124456
Q ss_pred HHhcCChhHHHHHHHHHHHc
Q 036068 140 LAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 140 ~~~~~~~~~a~~~~~~m~~~ 159 (178)
|.+.|.+..|..-++.+++.
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH
Confidence 77777777777777777765
No 168
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.47 E-value=0.26 Score=38.86 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 130 KFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 130 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
...|..+|.--..-|+...+..+-+++..
T Consensus 472 ~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 472 KEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 35566666666666666666666666543
No 169
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.079 Score=38.39 Aligned_cols=99 Identities=8% Similarity=0.026 Sum_probs=63.2
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhc---CChhHHHHHHHHhHhCCCCCcHHHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRV---NRFREALTLFQEMQTSNIMGDEFTIVS 77 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~ 77 (178)
-|+..|..|-..|.+.|+++.|..-|.+-.+ +|...+..+-+++... ....++..+|++..+.. .-++.+...
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 3556677777777777777777777775542 4555555555544433 24566777777776654 234555555
Q ss_pred HHHHhccccchhhHHHHHHHHHHhCc
Q 036068 78 ILTARANLRALDLGEWIKTYIDKNKV 103 (178)
Q Consensus 78 ll~~~~~~~~~~~a~~~~~~m~~~~~ 103 (178)
+-..+...|++.+|...|+.|.+...
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 66667777777777777777777653
No 170
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.44 E-value=0.041 Score=42.31 Aligned_cols=63 Identities=10% Similarity=-0.009 Sum_probs=53.2
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCC--CCCh----hHHHHHHHHHhhcCChhHHHHHHHHhHhC
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMP--ERDY----VLWTAMIDGYLRVNRFREALTLFQEMQTS 66 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~--~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 66 (178)
.+...|+.+-.+|.+.|++++|+..|++.. .|+. .+|..+-.+|.+.|+.++|.+.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456678999999999999999999999854 3543 35889999999999999999999998775
No 171
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.44 E-value=0.43 Score=39.75 Aligned_cols=71 Identities=14% Similarity=0.201 Sum_probs=54.3
Q ss_pred HhcCChhHHHHHhccCCCC---ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchh
Q 036068 17 INRGQVDIARQCFDQMPER---DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALD 89 (178)
Q Consensus 17 ~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 89 (178)
.|.|+.++|..+++....+ |..|...+-..|...+..++|..+|++.... -|+..-...++.+|.|.+++.
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk 127 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYK 127 (932)
T ss_pred HHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHH
Confidence 4778888888888776542 7778888888888888888888888887655 467777777777777776654
No 172
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.41 E-value=0.1 Score=41.35 Aligned_cols=124 Identities=6% Similarity=-0.139 Sum_probs=84.2
Q ss_pred CCcchhHHHHHHHHHHhcCC-----hhHHHHHhccCCC--C-ChhHHHHHHHHHhhcC--------ChhHHHHHHHHhHh
Q 036068 2 KNKDVISWTAIVSRYINRGQ-----VDIARQCFDQMPE--R-DYVLWTAMIDGYLRVN--------RFREALTLFQEMQT 65 (178)
Q Consensus 2 ~~p~~~~~~~li~~~~~~~~-----~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~ 65 (178)
|+.|...|...+++.....+ .+.|.++|++..+ | +...|..+..++.... +...+.+..++...
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 45778889999988655332 6789999998864 5 3344554444333221 12334444443333
Q ss_pred C-CCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 66 S-NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 66 ~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
. ....+...|.++--.....|++++|...+++....+ |+...|..+-..+...|+.++|.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~ 473 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAA 473 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHH
Confidence 2 123445677777666667799999999999999887 46788999999999999999987
No 173
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.41 E-value=0.39 Score=38.93 Aligned_cols=146 Identities=18% Similarity=0.143 Sum_probs=81.2
Q ss_pred HHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccc
Q 036068 11 AIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRA 87 (178)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 87 (178)
......-..|++..|..++...-+ | +...|-.-+..-+.+.+++.|..+|.+-... .|+...|..-++.-.-.+.
T Consensus 589 M~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~ 666 (913)
T KOG0495|consen 589 MYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDN 666 (913)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhh
Confidence 333444445566555555554432 1 4445555566666666777777777765553 4566666655555555666
Q ss_pred hhhHHHHHHHHHHhCc---------------------------------ccchHHHHHHHHHHHhcCChhhhc-------
Q 036068 88 LDLGEWIKTYIDKNKV---------------------------------KNDIFAGNALIDMYCICADVEKAQ------- 127 (178)
Q Consensus 88 ~~~a~~~~~~m~~~~~---------------------------------~~~~~~~~~ll~~~~~~~~~~~a~------- 127 (178)
.++|.+++++..+.-. +..+-.|-.+...--+.|.+..|.
T Consensus 667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrar 746 (913)
T KOG0495|consen 667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRAR 746 (913)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 6666666655544321 112222333333333333333332
Q ss_pred ----cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 128 ----KDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 128 ----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
.+...|-..|+.-.+.|..+.|..+..+.+.
T Consensus 747 lkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 747 LKNPKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred hcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3677777777777788888877777766654
No 174
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.41 E-value=0.23 Score=36.19 Aligned_cols=167 Identities=8% Similarity=0.012 Sum_probs=105.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCC-------CC--ChhHHHHHHHHHhhcCChhHHHHHHHHhHh----CCCCCc--H
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMP-------ER--DYVLWTAMIDGYLRVNRFREALTLFQEMQT----SNIMGD--E 72 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~-------~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~--~ 72 (178)
.|......|-..+++++|.+.|.+.- .+ -...|......|.+. ++++|...+++..+ .| .|+ .
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA 114 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHH
Confidence 46777777888888888887777653 21 223455555565555 88888888887543 34 334 3
Q ss_pred HHHHHHHHHhccc-cchhhHHHHHHHHHHh----Cc-ccchHHHHHHHHHHHhcCChhhhc-------------c----c
Q 036068 73 FTIVSILTARANL-RALDLGEWIKTYIDKN----KV-KNDIFAGNALIDMYCICADVEKAQ-------------K----D 129 (178)
Q Consensus 73 ~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~-------------~----~ 129 (178)
..+..+-..|-+. +++++|.+.|+...+. |- ......+..+...+.+.|++++|. + +
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 4777888888888 8999999999776542 31 112455677788899999999987 1 1
Q ss_pred hh-hHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCC--hhHHHHHHhhhh
Q 036068 130 KF-SWTTMIVGLAISGNGDKALDMFSQMLRA--SIKPD--EVAYVGVLSACT 176 (178)
Q Consensus 130 ~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~--~~t~~~li~a~~ 176 (178)
.. .|-..+..+...||...|.+.+++.... ++..+ ......||.||-
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 11 2223344555679999999999998753 44333 355666666664
No 175
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.019 Score=41.97 Aligned_cols=90 Identities=13% Similarity=0.154 Sum_probs=70.2
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCC-C--------ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHH
Q 036068 9 WTAIVSRYINRGQVDIARQCFDQMPE-R--------DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79 (178)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~-~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 79 (178)
-..++..-....+++++...+-+++. | +.++|-.++..| +.++++.++..=...|+-||..+++.+|
T Consensus 67 Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky----~pq~~i~~l~npIqYGiF~dqf~~c~l~ 142 (418)
T KOG4570|consen 67 VDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKY----DPQKAIYTLVNPIQYGIFPDQFTFCLLM 142 (418)
T ss_pred hhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHcc----ChHHHHHHHhCcchhccccchhhHHHHH
Confidence 34445555556778888888777764 1 445555555444 7889999998888999999999999999
Q ss_pred HHhccccchhhHHHHHHHHHHhC
Q 036068 80 TARANLRALDLGEWIKTYIDKNK 102 (178)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~m~~~~ 102 (178)
+.+.+.+++.+|.++...|....
T Consensus 143 D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 143 DSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999998888765
No 176
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.39 E-value=0.2 Score=39.56 Aligned_cols=142 Identities=12% Similarity=0.150 Sum_probs=87.2
Q ss_pred HHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc-HHHHHHHHHHhccccchh-
Q 036068 15 RYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD-EFTIVSILTARANLRALD- 89 (178)
Q Consensus 15 ~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~- 89 (178)
-+.+.|++.+|.-.|+...+ | +...|.-|-..-..+++-..|+..+++.++.. |+ ....-.|.-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD--PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhHHH
Confidence 35577888888888876543 3 45566666666666666666776666665542 22 222223333333332222
Q ss_pred ----------------------------------------hHHHHHHHH-HHhCcccchHHHHHHHHHHHhcCChhhhc-
Q 036068 90 ----------------------------------------LGEWIKTYI-DKNKVKNDIFAGNALIDMYCICADVEKAQ- 127 (178)
Q Consensus 90 ----------------------------------------~a~~~~~~m-~~~~~~~~~~~~~~ll~~~~~~~~~~~a~- 127 (178)
...++|-.+ .+.+.++|+.+...|=-.|--.|++++|.
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 233333222 23333456666666666666777777776
Q ss_pred ----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 128 ----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 128 ----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
.|...||.|-..++...+.++|+.-|++.++
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence 3788889988888888888999988888875
No 177
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.38 E-value=0.079 Score=43.80 Aligned_cols=106 Identities=15% Similarity=0.152 Sum_probs=65.8
Q ss_pred HhcCChhHHHHHhccCCCC-ChhHHHHHHHHHh--hcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHH
Q 036068 17 INRGQVDIARQCFDQMPER-DYVLWTAMIDGYL--RVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEW 93 (178)
Q Consensus 17 ~~~~~~~~a~~~~~~m~~~-~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 93 (178)
...+++.+|.+...++.++ .-..|...+.++. +.|+.++|..+++.....+.. |..|..++-.+|.+.++.++|..
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 3456666676666665432 2223444555443 677777777777777666544 77777777777777788888888
Q ss_pred HHHHHHHhCcccchHHHHHHHHHHHhcCChhh
Q 036068 94 IKTYIDKNKVKNDIFAGNALIDMYCICADVEK 125 (178)
Q Consensus 94 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 125 (178)
+|++..+.. |+......+..+|.|.+++.+
T Consensus 99 ~Ye~~~~~~--P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 99 LYERANQKY--PSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHHHhhC--CcHHHHHHHHHHHHHHHHHHH
Confidence 877776653 335555555555555554443
No 178
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.37 E-value=0.33 Score=37.65 Aligned_cols=125 Identities=12% Similarity=0.046 Sum_probs=73.8
Q ss_pred hcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHH
Q 036068 18 NRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWI 94 (178)
Q Consensus 18 ~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 94 (178)
..|++++|++.|-++.. .+..+.--+...|....+...|++++.+.... ++-|......|...|-+.|+..+|++.
T Consensus 536 ~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~ 614 (840)
T KOG2003|consen 536 ALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQC 614 (840)
T ss_pred HhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhh
Confidence 45667777776666543 34444444555555556666666655554332 233445555555555555555544443
Q ss_pred ----------------------------------HHHHHHhCcccchHHHHHHHHHH-HhcCChhhhc-----------c
Q 036068 95 ----------------------------------KTYIDKNKVKNDIFAGNALIDMY-CICADVEKAQ-----------K 128 (178)
Q Consensus 95 ----------------------------------~~~m~~~~~~~~~~~~~~ll~~~-~~~~~~~~a~-----------~ 128 (178)
|+.. .=+.|+..-|..++..+ .+.|++.+|. .
T Consensus 615 ~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~eka--aliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 615 HYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKA--ALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred hhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHH--HhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence 3222 23578888898887654 4578998887 3
Q ss_pred chhhHHHHHHHHHhcCC
Q 036068 129 DKFSWTTMIVGLAISGN 145 (178)
Q Consensus 129 ~~~~~~~li~~~~~~~~ 145 (178)
|..+..-|++.+...|-
T Consensus 693 dldclkflvri~~dlgl 709 (840)
T KOG2003|consen 693 DLDCLKFLVRIAGDLGL 709 (840)
T ss_pred chHHHHHHHHHhccccc
Confidence 66777777776665553
No 179
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.23 Score=35.45 Aligned_cols=147 Identities=16% Similarity=0.173 Sum_probs=101.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCC--CChh----HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPE--RDYV----LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 81 (178)
.|-.+.-+....|+.+.|...++++.. |+.. ....++. ..|++++|.++++.+.+.+ +-|..++--=+-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lE---a~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLE---ATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHH---HhhchhhHHHHHHHHhccC-cchhHHHHHHHHH
Confidence 356666777788999999999888764 3222 2333333 4578999999999999987 4456666644444
Q ss_pred hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cc-hhhHHHHHHHHHhc---CChh
Q 036068 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KD-KFSWTTMIVGLAIS---GNGD 147 (178)
Q Consensus 82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~-~~~~~~li~~~~~~---~~~~ 147 (178)
....|+--+|.+-+....+. +..|...|.-+-..|...|++++|. |. ...+..+...+--. .+.+
T Consensus 130 lka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 55556656777666665554 3679999999999999999999997 43 33333444433333 4567
Q ss_pred HHHHHHHHHHHc
Q 036068 148 KALDMFSQMLRA 159 (178)
Q Consensus 148 ~a~~~~~~m~~~ 159 (178)
.+.++|.+.++.
T Consensus 209 ~arkyy~~alkl 220 (289)
T KOG3060|consen 209 LARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHHh
Confidence 788888888765
No 180
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.095 Score=39.23 Aligned_cols=155 Identities=14% Similarity=0.115 Sum_probs=82.1
Q ss_pred HHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhc-------CChhHHHHHHHHhHhCCCCCc----H-------
Q 036068 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRV-------NRFREALTLFQEMQTSNIMGD----E------- 72 (178)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~-------~~~~~a~~~~~~m~~~~~~~~----~------- 72 (178)
.|+-.|.+++++.+|..+.+++..-++.-|-.=--.++.. ....-|...|+-.-+++..-| .
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 4566788999999999999988754444332211112222 224455666655544432211 1
Q ss_pred ---------HHHH---------------HHHHHhccccchhhHHHHHHHHHHhCcccchHHHH-HHHHHHHhcCChhhhc
Q 036068 73 ---------FTIV---------------SILTARANLRALDLGEWIKTYIDKNKVKNDIFAGN-ALIDMYCICADVEKAQ 127 (178)
Q Consensus 73 ---------~~~~---------------~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~ 127 (178)
.+|. .+.++.+..|.+.+|+++|-.+..-.++ +..+|. .+..+|.+++.++.|.
T Consensus 370 FL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHH
Confidence 1111 2334555556667777776555433333 344444 3455677777776665
Q ss_pred ---------cchhhH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHH
Q 036068 128 ---------KDKFSW-TTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168 (178)
Q Consensus 128 ---------~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 168 (178)
.+..+. ..+..-|-+.++|--|-..|+++... .|+.+-|
T Consensus 449 ~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 449 DMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 112222 22335556677777776677666543 4554433
No 181
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.26 E-value=0.021 Score=32.15 Aligned_cols=60 Identities=18% Similarity=0.288 Sum_probs=49.8
Q ss_pred HHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHH
Q 036068 13 VSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFT 74 (178)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 74 (178)
-..+.+.+++++|.++++.+.+ | +...|...-..+.+.|++++|.+.|++..+.+ |+...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~--p~~~~ 64 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS--PDDPD 64 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC--CCcHH
Confidence 3568899999999999998874 3 67778788889999999999999999998764 55444
No 182
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.16 E-value=0.089 Score=39.05 Aligned_cols=106 Identities=12% Similarity=0.030 Sum_probs=79.8
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH
Q 036068 39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC 118 (178)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 118 (178)
+.+.-|.-+...|+...|.++-++. + .|+..-|..-++++++.++|++-+++-.. .-+|.-|...+..+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 3444566667778887777765554 2 47999999999999999999887776322 234566888999999
Q ss_pred hcCChhhhc---cchhhHHHHHHHHHhcCChhHHHHHHHH
Q 036068 119 ICADVEKAQ---KDKFSWTTMIVGLAISGNGDKALDMFSQ 155 (178)
Q Consensus 119 ~~~~~~~a~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ 155 (178)
+.|+..+|. |. ..+..-+..|.+.|++.+|.+.-.+
T Consensus 249 ~~~~~~eA~~yI~k-~~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPK-IPDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHh-CChHHHHHHHHHCCCHHHHHHHHHH
Confidence 999998887 33 4558889999999999999875433
No 183
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.35 Score=35.20 Aligned_cols=110 Identities=10% Similarity=0.077 Sum_probs=71.1
Q ss_pred ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccc---cchhhHHHHHHHHHHhCcccchHHHHH
Q 036068 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL---RALDLGEWIKTYIDKNKVKNDIFAGNA 112 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~ 112 (178)
|...|-.|-..|...|+.+.|...|..-.+.. .++...+..+-.++... ....++..++++..+....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-------- 225 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-------- 225 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc--------
Confidence 77778888888888888888888887766543 23455555555554322 2355777777777765422
Q ss_pred HHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHH
Q 036068 113 LIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172 (178)
Q Consensus 113 ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 172 (178)
|+.+-..|-..+...|++.+|...++.|++. -|.......+|
T Consensus 226 ----------------~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~i 267 (287)
T COG4235 226 ----------------NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLI 267 (287)
T ss_pred ----------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHH
Confidence 3444555666777788888888888888875 34333343333
No 184
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.06 E-value=0.65 Score=39.44 Aligned_cols=146 Identities=11% Similarity=0.033 Sum_probs=96.0
Q ss_pred HHHHHhcCChhHHHHHhccCCC----CCh----hHHHHHHHHHhhcCChhHHHHHHHHhHhC----CC-CCcHHHHHHHH
Q 036068 13 VSRYINRGQVDIARQCFDQMPE----RDY----VLWTAMIDGYLRVNRFREALTLFQEMQTS----NI-MGDEFTIVSIL 79 (178)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~----~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~ll 79 (178)
-..+...|++++|...+++..+ .+. ...+.+-..+...|++++|...+++.... |- .+-..+...+.
T Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 459 AQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 3445678999999888876432 222 23455666677899999999999887542 21 11123455566
Q ss_pred HHhccccchhhHHHHHHHHHH----hCcc--c-chHHHHHHHHHHHhcCChhhhc--------------c--chhhHHHH
Q 036068 80 TARANLRALDLGEWIKTYIDK----NKVK--N-DIFAGNALIDMYCICADVEKAQ--------------K--DKFSWTTM 136 (178)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~m~~----~~~~--~-~~~~~~~ll~~~~~~~~~~~a~--------------~--~~~~~~~l 136 (178)
..+...|++++|...+++... .+.. + ....+..+-..+...|++++|. + ....+..+
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 678889999999998876554 2221 1 1223444555677779998885 1 12233445
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 036068 137 IVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 137 i~~~~~~~~~~~a~~~~~~m~~ 158 (178)
.......|+.++|.+.+++...
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5667789999999999988864
No 185
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=95.91 E-value=0.079 Score=31.79 Aligned_cols=63 Identities=11% Similarity=-0.015 Sum_probs=50.8
Q ss_pred ChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHH-hCcccchHHHHHHHHH
Q 036068 52 RFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK-NKVKNDIFAGNALIDM 116 (178)
Q Consensus 52 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~ 116 (178)
+.=++.+.++.+....+.|+.....+.+++|.+.+++..|.++++..+. .|. ....|..+++-
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lqe 85 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQE 85 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHHH
Confidence 3445777788888999999999999999999999999999999998874 332 34467776653
No 186
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.90 E-value=0.13 Score=40.53 Aligned_cols=60 Identities=12% Similarity=-0.059 Sum_probs=24.0
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHH
Q 036068 40 WTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK 100 (178)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 100 (178)
...|--.|--.|++++|.++|+..+... +-|...||-|--.++...+.++|...|.+..+
T Consensus 433 Q~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 433 QSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence 3333333333444444444444443332 12233444444444444444444444444443
No 187
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.90 E-value=0.14 Score=37.60 Aligned_cols=116 Identities=14% Similarity=0.246 Sum_probs=70.3
Q ss_pred hhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc--cc----chhhHHHHHHHHHHhCc---ccchHHHHHHHHHHHhcCCh
Q 036068 53 FREALTLFQEMQTSNIMGDEFTIVSILTARAN--LR----ALDLGEWIKTYIDKNKV---KNDIFAGNALIDMYCICADV 123 (178)
Q Consensus 53 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~m~~~~~---~~~~~~~~~ll~~~~~~~~~ 123 (178)
+++..++++.|.+.|...+..+|.+....... .. ...++..+|+.|++..+ .++..++..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 56677888888999988888777764444433 22 24578889999998764 3445556666544 33334
Q ss_pred hhhc------------------cchhhHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCChhHHHH
Q 036068 124 EKAQ------------------KDKFSWTTMIVGLAISGN--GDKALDMFSQMLRASIKPDEVAYVG 170 (178)
Q Consensus 124 ~~a~------------------~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~t~~~ 170 (178)
+... .+......++...-...+ ..++.++++.+.+.|+++....|..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 3332 122222222222222222 3478889999999998877766653
No 188
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.83 E-value=0.097 Score=37.93 Aligned_cols=77 Identities=8% Similarity=0.002 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHH-----hCcccchHHHHHH
Q 036068 39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK-----NKVKNDIFAGNAL 113 (178)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~~~l 113 (178)
++.-++..+...|+.+.+.+.++++.... +-+...|..+|.+|.+.|+...|...|+.+.+ .|+.|.+.+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 44445555555555555555555555543 23455555555555555555555555554443 4555555555555
Q ss_pred HHH
Q 036068 114 IDM 116 (178)
Q Consensus 114 l~~ 116 (178)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 189
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=95.81 E-value=0.017 Score=37.35 Aligned_cols=52 Identities=10% Similarity=0.012 Sum_probs=22.3
Q ss_pred HHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHH
Q 036068 44 IDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIK 95 (178)
Q Consensus 44 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 95 (178)
|..+.+.+..+....+++.+...+..-+....+.++..|++.++.++..+++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 3334444444444444444444333333444445555555544444443333
No 190
>PRK15331 chaperone protein SicA; Provisional
Probab=95.80 E-value=0.071 Score=35.35 Aligned_cols=76 Identities=12% Similarity=-0.063 Sum_probs=32.7
Q ss_pred hcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhh
Q 036068 49 RVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126 (178)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 126 (178)
..|++++|..+|+-+...+. -+..-+..|--++-..+++++|...|......+. -|+...-..-.+|...|+.+.|
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 44555555555555544331 1222233333333444555555555544333321 1222233334445555555554
No 191
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.72 E-value=0.033 Score=26.83 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH
Q 036068 132 SWTTMIVGLAISGNGDKALDMFSQML 157 (178)
Q Consensus 132 ~~~~li~~~~~~~~~~~a~~~~~~m~ 157 (178)
+|+.|-..|.+.|++++|.++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47888999999999999999999955
No 192
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.71 E-value=0.18 Score=38.92 Aligned_cols=147 Identities=7% Similarity=0.099 Sum_probs=97.2
Q ss_pred HHhcCChhHHHHHhccCCCC---C------hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh--cc
Q 036068 16 YINRGQVDIARQCFDQMPER---D------YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR--AN 84 (178)
Q Consensus 16 ~~~~~~~~~a~~~~~~m~~~---~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~ 84 (178)
+-+.+++.++..+|.++-+. + ...-+.+|++|... +.+.....+.+..+.. | ...|..+..+. -+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHH
Confidence 34678999999999988642 2 33455678888765 5677777777766542 3 34566666654 57
Q ss_pred ccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc---
Q 036068 85 LRALDLGEWIKTYIDKN--KVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA--- 159 (178)
Q Consensus 85 ~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 159 (178)
.+++++|.+.+..-... +..+.-- + -++....+|...=+..+.++...|++.++..++++|.+.
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~L--d---------~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llk 160 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWL--D---------TNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLK 160 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchh--h---------hhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhh
Confidence 78899999988776654 3333211 0 012222245555577888889999999999999888764
Q ss_pred -CCCCChhHHHHHHhhhhc
Q 036068 160 -SIKPDEVAYVGVLSACTH 177 (178)
Q Consensus 160 -g~~p~~~t~~~li~a~~~ 177 (178)
....+..+|+.++-.+++
T Consensus 161 rE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 161 RECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred hhhcccHHHHHHHHHHHhH
Confidence 334788888876555554
No 193
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.66 E-value=0.094 Score=38.05 Aligned_cols=99 Identities=8% Similarity=0.003 Sum_probs=74.7
Q ss_pred HHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhH
Q 036068 15 RYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLG 91 (178)
Q Consensus 15 ~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 91 (178)
-+.+.++|.+|+..|.+..+ .|.+-|.-=-.+|.+.|.++.|++=-+.-.... +....+|..|=.+|...|++++|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 35677889999999998764 478888888899999999999987655554443 22356899999999999999999
Q ss_pred HHHHHHHHHhCcccchHHHHHHHHH
Q 036068 92 EWIKTYIDKNKVKNDIFAGNALIDM 116 (178)
Q Consensus 92 ~~~~~~m~~~~~~~~~~~~~~ll~~ 116 (178)
.+.|+..... +|+-.+|-.=+..
T Consensus 169 ~~aykKaLel--dP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 169 IEAYKKALEL--DPDNESYKSNLKI 191 (304)
T ss_pred HHHHHhhhcc--CCCcHHHHHHHHH
Confidence 9998877664 5665565554443
No 194
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.65 E-value=0.61 Score=36.92 Aligned_cols=118 Identities=15% Similarity=0.224 Sum_probs=74.9
Q ss_pred hhHHHHHHHHhHhCC-CCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCccc-chHHHHHHHHHHHhcCChhhhc---
Q 036068 53 FREALTLFQEMQTSN-IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKN-DIFAGNALIDMYCICADVEKAQ--- 127 (178)
Q Consensus 53 ~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~--- 127 (178)
.+.....+++++..- +.|+ .+|...|+.-.+..-++.|..+|....+.+..+ ++.+.+++|..||... .+-|.
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD-~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKD-KETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCC-hhHHHHHH
Confidence 444555555554432 3333 567777888778777888888888888777666 6778888888777543 33343
Q ss_pred -------cchhhH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh--hHHHHHH
Q 036068 128 -------KDKFSW-TTMIVGLAISGNGDKALDMFSQMLRASIKPDE--VAYVGVL 172 (178)
Q Consensus 128 -------~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~t~~~li 172 (178)
+|...| +..++-+...|+-..+..+|++.+..++.||. ..|..+|
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l 479 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRML 479 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHH
Confidence 333333 55666666777777777777777777555543 3444433
No 195
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.65 E-value=0.22 Score=31.91 Aligned_cols=69 Identities=10% Similarity=0.023 Sum_probs=51.5
Q ss_pred ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCccc
Q 036068 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKN 105 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 105 (178)
+....+..+..+.+.|.-++-.++++++.+.+ .+++.....+..+|.+.|+..++.+++.+.-+.|.+-
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~kE 153 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLKE 153 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchHH
Confidence 55667888899999999999999999887643 6788888999999999999999999999998888753
No 196
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=95.62 E-value=0.9 Score=36.68 Aligned_cols=100 Identities=12% Similarity=0.128 Sum_probs=75.9
Q ss_pred CcchhHH--HHHHHHHHhcCChhHHHHHhccCCCCChhHHHH---HHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHH
Q 036068 3 NKDVISW--TAIVSRYINRGQVDIARQCFDQMPERDYVLWTA---MIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVS 77 (178)
Q Consensus 3 ~p~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 77 (178)
+|++..| --++..+-+.|+++.|...++.....++..+.. =-+.+.-.|++++|..++++..+.. .||...-.-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsK 444 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSK 444 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHH
Confidence 4555554 446777888999999999999887754443333 3367778899999999999988776 457666557
Q ss_pred HHHHhccccchhhHHHHHHHHHHhCc
Q 036068 78 ILTARANLRALDLGEWIKTYIDKNKV 103 (178)
Q Consensus 78 ll~~~~~~~~~~~a~~~~~~m~~~~~ 103 (178)
..+-..+.++.++|.++.....+.|.
T Consensus 445 cAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 445 CAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHccccHHHHHHHHHhhhccc
Confidence 77777888999999999988888775
No 197
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.58 E-value=0.92 Score=38.54 Aligned_cols=93 Identities=11% Similarity=-0.008 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCC-------C----ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC--CCCC--cH
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPE-------R----DYVLWTAMIDGYLRVNRFREALTLFQEMQTS--NIMG--DE 72 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~--~~ 72 (178)
++..+...+...|+++.|...+++... + ....+..+-..+...|++++|...+++.... ...+ ..
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 612 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQL 612 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHH
Confidence 445566677788888888887766432 1 1223334445566778999998888876442 1112 23
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHH
Q 036068 73 FTIVSILTARANLRALDLGEWIKTYIDK 100 (178)
Q Consensus 73 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 100 (178)
..+..+.......|++++|...+.....
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455567788888888888876644
No 198
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.56 E-value=0.46 Score=32.52 Aligned_cols=93 Identities=8% Similarity=0.044 Sum_probs=45.1
Q ss_pred CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCc-ccchHHHHHH
Q 036068 35 RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV-KNDIFAGNAL 113 (178)
Q Consensus 35 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l 113 (178)
|++..--.|-.+..+.|+..+|...|++-..--..-|......+.++....+++..+...++.+.+... -.++.+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 344444445555555555666655555544332333445555555555555555555555555554331 0112222233
Q ss_pred HHHHHhcCChhhhc
Q 036068 114 IDMYCICADVEKAQ 127 (178)
Q Consensus 114 l~~~~~~~~~~~a~ 127 (178)
-..|...|...+|.
T Consensus 167 aR~laa~g~~a~Ae 180 (251)
T COG4700 167 ARTLAAQGKYADAE 180 (251)
T ss_pred HHHHHhcCCchhHH
Confidence 44455555555443
No 199
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.55 E-value=0.26 Score=38.40 Aligned_cols=124 Identities=15% Similarity=0.147 Sum_probs=71.0
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccch
Q 036068 9 WTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88 (178)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 88 (178)
.+.++..+-+.|..+.|+++...-. .-.+...+.|+.+.|.++-++ ..+...|..|-+...+.|++
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~--------~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~ 363 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPD--------HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNI 363 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HH--------HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChH--------HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCH
Confidence 4455555555555555555544321 112223344555555443332 23667888888888888888
Q ss_pred hhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc------cchhhHHHHHHHHHhcCChhHHHHHHHH
Q 036068 89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ------KDKFSWTTMIVGLAISGNGDKALDMFSQ 155 (178)
Q Consensus 89 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~------~~~~~~~~li~~~~~~~~~~~a~~~~~~ 155 (178)
+.|++.++...+ +..|+-.|.-.|+.+... ...--+|..+.++...|+.++..+++.+
T Consensus 364 ~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 364 ELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888765432 555666666666665543 2233466777777778888888777654
No 200
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=95.53 E-value=0.14 Score=31.02 Aligned_cols=76 Identities=13% Similarity=0.070 Sum_probs=50.3
Q ss_pred HHHHHHHHhhcCChh--HHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068 40 WTAMIDGYLRVNRFR--EALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116 (178)
Q Consensus 40 ~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 116 (178)
|+.--..|....+.+ +..+-++.+....+.|+.....+.+++|.+.+++..|.++++.++..-- +....|..+++-
T Consensus 11 F~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~-~~~~~Y~~~lqE 88 (108)
T PF02284_consen 11 FDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG-NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-T-TTHHHHHHHH
T ss_pred HHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-ChHHHHHHHHHH
Confidence 333334444444433 5667778888899999999999999999999999999999998875432 223377777764
No 201
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=95.53 E-value=0.019 Score=37.15 Aligned_cols=80 Identities=13% Similarity=0.103 Sum_probs=58.3
Q ss_pred HHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----cchhhHHHHHHHHHhcCChhHHHH
Q 036068 77 SILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----KDKFSWTTMIVGLAISGNGDKALD 151 (178)
Q Consensus 77 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----~~~~~~~~li~~~~~~~~~~~a~~ 151 (178)
.+++.+.+.+.++....+++.+.+.+...+....+.++..|++.++.+... .+..-...++..|.+.|.++++.-
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd~~~~~~~c~~~~l~~~a~~ 91 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYDLDKALRLCEKHGLYEEAVY 91 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-CTHHHHHHHTTTSHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccccCHHHHHHHHHhcchHHHHHH
Confidence 367788888999999999999998877778999999999999999877766 222334455666666666666666
Q ss_pred HHHHH
Q 036068 152 MFSQM 156 (178)
Q Consensus 152 ~~~~m 156 (178)
+|.++
T Consensus 92 Ly~~~ 96 (143)
T PF00637_consen 92 LYSKL 96 (143)
T ss_dssp HHHCC
T ss_pred HHHHc
Confidence 66554
No 202
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.49 E-value=0.49 Score=32.38 Aligned_cols=121 Identities=11% Similarity=0.015 Sum_probs=83.8
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC----CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCC-CCcHHHHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE----RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI-MGDEFTIVSI 78 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l 78 (178)
|++..--.|-.+..+.|+..+|...|++-.. .|....-.+-++....++...|...++++-+..- ..+..+-..+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 5666666788888888999999888887654 3777777777888888888888888888766531 1123355567
Q ss_pred HHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhh
Q 036068 79 LTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126 (178)
Q Consensus 79 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 126 (178)
-+.+...|++.+|+.-|+.....-..| ..-.-.-..+.+.|+.+++
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg~--~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPGP--QARIYYAEMLAKQGRLREA 212 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCH--HHHHHHHHHHHHhcchhHH
Confidence 788888888888888888888764433 3333333334555555544
No 203
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.48 E-value=0.3 Score=37.74 Aligned_cols=88 Identities=9% Similarity=-0.095 Sum_probs=67.2
Q ss_pred ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcH----HHHHHHHHHhccccchhhHHHHHHHHHHhC-c-------
Q 036068 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDE----FTIVSILTARANLRALDLGEWIKTYIDKNK-V------- 103 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~------- 103 (178)
+...|+.+-.+|.+.|++++|+..|++-.+.+ |+. .+|..+-.+|.+.|+.++|.+.++...+.+ .
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~~i~~ 151 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFSTILN 151 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHHHHHh
Confidence 66789999999999999999999999987764 563 468999999999999999999998887752 1
Q ss_pred ccch------HHHHHHHHHHHhcCChhh
Q 036068 104 KNDI------FAGNALIDMYCICADVEK 125 (178)
Q Consensus 104 ~~~~------~~~~~ll~~~~~~~~~~~ 125 (178)
.|+. .-+..++..+.+.|....
T Consensus 152 DpdL~plR~~pef~eLlee~rk~G~~~g 179 (453)
T PLN03098 152 DPDLAPFRASPEFKELQEEARKGGEDIG 179 (453)
T ss_pred CcchhhhcccHHHHHHHHHHHHhCCccC
Confidence 1111 245566666666665443
No 204
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.44 E-value=0.31 Score=35.40 Aligned_cols=75 Identities=15% Similarity=0.192 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHh-----CCCCCcHHHHHHH
Q 036068 7 ISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQT-----SNIMGDEFTIVSI 78 (178)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~~~l 78 (178)
.++..++..+...|+++.+.+.++++.. | +...|..+|.+|.+.|+...|...|+++.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 3566778888888888888888887753 3 777888888888888888888888888755 5778877776666
Q ss_pred HHH
Q 036068 79 LTA 81 (178)
Q Consensus 79 l~~ 81 (178)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 555
No 205
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.39 E-value=0.61 Score=37.74 Aligned_cols=137 Identities=12% Similarity=0.000 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhC------CCCCcHHHHHHHHH
Q 036068 7 ISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTS------NIMGDEFTIVSILT 80 (178)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~~~~~ll~ 80 (178)
..|...+...-+.|-.+-+..+++.-.+-++..-+.-|..+++.+++++|-+.+...... ..+.+...|.-+-+
T Consensus 139 rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcd 218 (835)
T KOG2047|consen 139 RIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCD 218 (835)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHH
Confidence 357777777777888888888888877767777888888899999999998888776542 23455666666666
Q ss_pred Hhccccch---hhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cchhhHHHHHHHHHhc
Q 036068 81 ARANLRAL---DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KDKFSWTTMIVGLAIS 143 (178)
Q Consensus 81 ~~~~~~~~---~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~~~~~~~li~~~~~~ 143 (178)
..++.-+. -....++..+..+-...-...|++|.+.|.+.|++++|. -++.-|..+.+.|+..
T Consensus 219 lis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~F 294 (835)
T KOG2047|consen 219 LISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQF 294 (835)
T ss_pred HHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHH
Confidence 55554432 234445555544433444677899999999999998886 3455566666666543
No 206
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.36 E-value=0.25 Score=32.02 Aligned_cols=118 Identities=11% Similarity=0.053 Sum_probs=75.8
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHhHhCC--CCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068 39 LWTAMIDGYLRVNRFREALTLFQEMQTSN--IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116 (178)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 116 (178)
.|+.-... .+.|++++|.+.|+.+..+- -+-....-..++.++.+.+++++|...+++.++..+..--.-|-..+.+
T Consensus 13 ly~~a~~~-l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 13 LYQEAQEA-LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHH-HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 34443333 56789999999999998762 1223466778899999999999999999999998865444556666666
Q ss_pred HHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 036068 117 YCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165 (178)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 165 (178)
++.-...+.. +..+...=...+....|+.-|+++++. -|++
T Consensus 92 L~~~~~~~~~------~~~~~~~drD~~~~~~A~~~f~~lv~~--yP~S 132 (142)
T PF13512_consen 92 LSYYEQDEGS------LQSFFRSDRDPTPARQAFRDFEQLVRR--YPNS 132 (142)
T ss_pred HHHHHHhhhH------HhhhcccccCcHHHHHHHHHHHHHHHH--CcCC
Confidence 5544433311 111111111233456777777777764 4554
No 207
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.88 Score=35.80 Aligned_cols=156 Identities=15% Similarity=0.120 Sum_probs=98.8
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCCC---ChhHHHH-------HHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHH
Q 036068 9 WTAIVSRYINRGQVDIARQCFDQMPER---DYVLWTA-------MIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSI 78 (178)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~-------li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 78 (178)
++..-.++...|.+.+...+-+.-.+. ...-|+. +-.+|.+.++++.|...|++-+.....|+..+=...
T Consensus 260 ~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~ 339 (539)
T KOG0548|consen 260 LNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKE 339 (539)
T ss_pred HHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHH
Confidence 444555566666665555444443321 1112222 233666677888888888887665544443321111
Q ss_pred -------------------------HHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhH
Q 036068 79 -------------------------LTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSW 133 (178)
Q Consensus 79 -------------------------l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 133 (178)
-+.+.+.|++..|...|.+++++. +-|...|...-.+|.+.|.+..|..|-...
T Consensus 340 ~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ 418 (539)
T KOG0548|consen 340 AEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKC 418 (539)
T ss_pred HHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 235677899999999999999988 457889999999999999999998432222
Q ss_pred H----HHHHHHHhc-------CChhHHHHHHHHHHHcCCCCChhH
Q 036068 134 T----TMIVGLAIS-------GNGDKALDMFSQMLRASIKPDEVA 167 (178)
Q Consensus 134 ~----~li~~~~~~-------~~~~~a~~~~~~m~~~g~~p~~~t 167 (178)
. ..+.+|.+. .++++|.+.|.+-++. .|+..-
T Consensus 419 ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e 461 (539)
T KOG0548|consen 419 IELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAE 461 (539)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHH
Confidence 1 334455544 5778888888877664 355433
No 208
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.05 E-value=0.82 Score=33.68 Aligned_cols=90 Identities=14% Similarity=0.041 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCCC---ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHH-HHHHhcc
Q 036068 9 WTAIVSRYINRGQVDIARQCFDQMPER---DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVS-ILTARAN 84 (178)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-ll~~~~~ 84 (178)
+++.+..+.+..++++|++++..-.++ +......|-..|-...++..|-.++.++... .|...-|.. -.+.+-+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 567777888999999999998866543 6667778888888999999999999998765 466665542 3455667
Q ss_pred ccchhhHHHHHHHHHH
Q 036068 85 LRALDLGEWIKTYIDK 100 (178)
Q Consensus 85 ~~~~~~a~~~~~~m~~ 100 (178)
.+.+.+|..+...|.+
T Consensus 91 A~i~ADALrV~~~~~D 106 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLD 106 (459)
T ss_pred hcccHHHHHHHHHhcC
Confidence 7888888888877654
No 209
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.02 E-value=0.26 Score=33.32 Aligned_cols=55 Identities=7% Similarity=0.166 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCCC------ChhHHHHHHHHHhhcCChhHHHHHHHHh
Q 036068 9 WTAIVSRYINRGQVDIARQCFDQMPER------DYVLWTAMIDGYLRVNRFREALTLFQEM 63 (178)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m 63 (178)
+..+.+.|++.|+++.|.+.|.++++. -+..+-.+|+.....+++..+.....+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 444555555555555555555555542 2223344455555555555555554443
No 210
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=94.87 E-value=1.7 Score=35.20 Aligned_cols=163 Identities=13% Similarity=0.156 Sum_probs=93.5
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCC---CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccc
Q 036068 9 WTAIVSRYINRGQVDIARQCFDQMP---ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL 85 (178)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 85 (178)
|+.+--.+-...++++|+..|.... +-|...|.-|--.=++.|+++.......++.+.. ......|..+..+..-.
T Consensus 78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~ 156 (700)
T KOG1156|consen 78 WHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLL 156 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHH
Confidence 4433333333444555555444322 1233333333333333444444444444443331 11234566666677777
Q ss_pred cchhhHHHHHHHHHHhC-cccchHHHHHHHH------HHHhcCChhhhc----------cchhhH-HHHHHHHHhcCChh
Q 036068 86 RALDLGEWIKTYIDKNK-VKNDIFAGNALID------MYCICADVEKAQ----------KDKFSW-TTMIVGLAISGNGD 147 (178)
Q Consensus 86 ~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~------~~~~~~~~~~a~----------~~~~~~-~~li~~~~~~~~~~ 147 (178)
|+...|..+++...+.. -.|+...+..... ...+.|..+.|. .|-..+ .+-..-+.+.++.+
T Consensus 157 g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lE 236 (700)
T KOG1156|consen 157 GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLE 236 (700)
T ss_pred HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHH
Confidence 88999999999888766 3566666654433 344567777776 233333 34446677899999
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHhh
Q 036068 148 KALDMFSQMLRASIKPDEVAYVGVLSA 174 (178)
Q Consensus 148 ~a~~~~~~m~~~g~~p~~~t~~~li~a 174 (178)
+|..+|..++.. .||..-|.-.+..
T Consensus 237 eA~~~y~~Ll~r--nPdn~~Yy~~l~~ 261 (700)
T KOG1156|consen 237 EAVKVYRRLLER--NPDNLDYYEGLEK 261 (700)
T ss_pred hHHHHHHHHHhh--CchhHHHHHHHHH
Confidence 999999999987 5887766655443
No 211
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.69 E-value=0.66 Score=34.70 Aligned_cols=138 Identities=11% Similarity=0.055 Sum_probs=90.9
Q ss_pred cCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC---CCCCcHHHHHHHHHHhccccchhhHH
Q 036068 19 RGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTS---NIMGDEFTIVSILTARANLRALDLGE 92 (178)
Q Consensus 19 ~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~ 92 (178)
.|+..+|-..++++.+ | |...++.--.++..+|+.+.-...++++.-. +++-....-..+..++...|-+++|+
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 4555566666666554 2 7777888888888888888888888887544 33222333445566778889999999
Q ss_pred HHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----cc-----------hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 036068 93 WIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----KD-----------KFSWTTMIVGLAISGNGDKALDMFSQML 157 (178)
Q Consensus 93 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----~~-----------~~~~~~li~~~~~~~~~~~a~~~~~~m~ 157 (178)
+.-++..+.+ +.|.....+....+-..|++.++. .. ..-|=...-.+...+.++.|+++|++=.
T Consensus 196 k~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 196 KQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 8887777665 346666777777777778777776 11 1112222333445589999999997543
No 212
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.69 E-value=0.18 Score=25.35 Aligned_cols=35 Identities=20% Similarity=0.381 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhH
Q 036068 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 167 (178)
Q Consensus 131 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t 167 (178)
.+|..+...|.+.|++++|.++|++.++. .|+...
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~~ 36 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--DPDDPE 36 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCHH
Confidence 35778889999999999999999999985 576543
No 213
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.68 E-value=0.56 Score=31.72 Aligned_cols=65 Identities=9% Similarity=0.054 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc--HHHHHHHHHHhccccchhhHHHHHHHHHHh
Q 036068 37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD--EFTIVSILTARANLRALDLGEWIKTYIDKN 101 (178)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 101 (178)
...+..+...|.+.|+.+.|.+.|.++......+. ...+..+|+.....+++..+...+......
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34678899999999999999999999988755444 456778888999999999988888766543
No 214
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.65 E-value=0.94 Score=31.24 Aligned_cols=113 Identities=10% Similarity=-0.025 Sum_probs=67.6
Q ss_pred HHHHhhcCChhHHHHHHHHhHhCC--CCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcC
Q 036068 44 IDGYLRVNRFREALTLFQEMQTSN--IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121 (178)
Q Consensus 44 i~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 121 (178)
-..+...|++++|.+.|+++...- -+--......+..++-+.|+++.|...++.+++..+.....-+-..+.+.+...
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 345567899999999999998752 122234556788899999999999999999998765443333444444443322
Q ss_pred Chhhh----------ccchhhHHHHHHHHHhcCChhHHHHHHHHH
Q 036068 122 DVEKA----------QKDKFSWTTMIVGLAISGNGDKALDMFSQM 156 (178)
Q Consensus 122 ~~~~a----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 156 (178)
..... ..-...+..++.-|=......+|...+.++
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l 136 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAEL 136 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHH
T ss_pred hCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHH
Confidence 22222 123445556666666666666665544444
No 215
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.56 E-value=0.11 Score=24.98 Aligned_cols=23 Identities=9% Similarity=0.277 Sum_probs=13.3
Q ss_pred HHHHHHHHhhcCChhHHHHHHHH
Q 036068 40 WTAMIDGYLRVNRFREALTLFQE 62 (178)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~~~~~ 62 (178)
|+.|-..|.+.|++++|.++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555566666666666666665
No 216
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.52 E-value=0.56 Score=30.10 Aligned_cols=126 Identities=16% Similarity=0.140 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068 37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116 (178)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 116 (178)
......++..+.+.+..+....+++.+...+. .+....+.++..|++.+. ++..+.+ .. ..+......++..
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l---~~---~~~~yd~~~~~~~ 78 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERL---DN---KSNHYDIEKVGKL 78 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHH---Hh---ccccCCHHHHHHH
Confidence 33456788889888999999999999988873 677889999999987643 2333333 32 1233334456777
Q ss_pred HHhcCChhhhc---cchhhHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCCChhHHHHHHhhhh
Q 036068 117 YCICADVEKAQ---KDKFSWTTMIVGLAIS-GNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176 (178)
Q Consensus 117 ~~~~~~~~~a~---~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~ 176 (178)
+.+.+.++.+. ....-|...+..+... ++++.|.+++.+ .-+...|..++..|.
T Consensus 79 c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 79 CEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred HHHcCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 77777666554 1122233344444444 666666666665 235667777776654
No 217
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.51 E-value=1 Score=37.73 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCChhhhc------cchhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 036068 110 GNALIDMYCICADVEKAQ------KDKFSWTTMIVGLAISGNGDKALDMFSQML 157 (178)
Q Consensus 110 ~~~ll~~~~~~~~~~~a~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 157 (178)
|-.++...|-.|+.++|. .|....-.|.+.|-+.|++.+|...|-+.+
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 334555556666666665 477777888899999999999998887754
No 218
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=94.49 E-value=0.79 Score=29.86 Aligned_cols=77 Identities=10% Similarity=0.070 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCC---------CChhHHHHHHHHHhhcCC-hhHHHHHHHHhHhCCCCCcHHHHHHH
Q 036068 9 WTAIVSRYINRGQVDIARQCFDQMPE---------RDYVLWTAMIDGYLRVNR-FREALTLFQEMQTSNIMGDEFTIVSI 78 (178)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~---------~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~l 78 (178)
.|.++.-....+++....++++.+.. .+...|++++.+.++... .--+..+|+.|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34444444555555555555555431 244455555555544443 23345555555555555555555555
Q ss_pred HHHhccc
Q 036068 79 LTARANL 85 (178)
Q Consensus 79 l~~~~~~ 85 (178)
|+++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 5555544
No 219
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=94.45 E-value=1.2 Score=31.72 Aligned_cols=140 Identities=12% Similarity=0.014 Sum_probs=84.7
Q ss_pred ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcH--HHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHH
Q 036068 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDE--FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNAL 113 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 113 (178)
+...+-.....+.+.|++++|.+.|+++...--.+.. ...-.+..++.+.+++++|...++...+..+...-.-+...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 4444334455556789999999999999886422211 11235667889999999999999999987654444444444
Q ss_pred HHHHHh--cC---------------Chh---hhc----------cch----------------hhH--HHHHHHHHhcCC
Q 036068 114 IDMYCI--CA---------------DVE---KAQ----------KDK----------------FSW--TTMIVGLAISGN 145 (178)
Q Consensus 114 l~~~~~--~~---------------~~~---~a~----------~~~----------------~~~--~~li~~~~~~~~ 145 (178)
+.+.+. .+ +.. +|. |+. ..- -.+..-|.+.|.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~ 190 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGA 190 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 544431 11 111 111 110 000 123345778888
Q ss_pred hhHHHHHHHHHHHc--CCCCChhHHHHHHhhh
Q 036068 146 GDKALDMFSQMLRA--SIKPDEVAYVGVLSAC 175 (178)
Q Consensus 146 ~~~a~~~~~~m~~~--g~~p~~~t~~~li~a~ 175 (178)
+..|..-++.+.+. +-+........++.+|
T Consensus 191 y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay 222 (243)
T PRK10866 191 YVAVVNRVEQMLRDYPDTQATRDALPLMENAY 222 (243)
T ss_pred hHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence 88888888888874 3334445555555555
No 220
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.44 E-value=2.1 Score=34.35 Aligned_cols=155 Identities=13% Similarity=0.178 Sum_probs=100.5
Q ss_pred CChhHHHHHhccCCCC-ChhHHHHHHHHHhhcC--ChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHH
Q 036068 20 GQVDIARQCFDQMPER-DYVLWTAMIDGYLRVN--RFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKT 96 (178)
Q Consensus 20 ~~~~~a~~~~~~m~~~-~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 96 (178)
+.-+.+.++-...+.. -...+.+++...-+.. ...++..++...-...-.-......+.++.....|+++.|.+++.
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3444555555555542 2444555555443322 356677777766554322234566677788889999999999998
Q ss_pred --------HHHHhCcccchHHHHHHHHHHHhcCChhhhc--------------cchhhHHHHH----HHHHhcCChhHHH
Q 036068 97 --------YIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------------KDKFSWTTMI----VGLAISGNGDKAL 150 (178)
Q Consensus 97 --------~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--------------~~~~~~~~li----~~~~~~~~~~~a~ 150 (178)
.+.+.+.. +.+...++..|.+.++-+.|. +.....+.++ .--.+.|+.++|.
T Consensus 401 ~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~ 478 (652)
T KOG2376|consen 401 LFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEAS 478 (652)
T ss_pred HHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHH
Confidence 55555544 456677777777776666554 2223333333 3334679999999
Q ss_pred HHHHHHHHcCCCCChhHHHHHHhhhhc
Q 036068 151 DMFSQMLRASIKPDEVAYVGVLSACTH 177 (178)
Q Consensus 151 ~~~~~m~~~g~~p~~~t~~~li~a~~~ 177 (178)
.+++++.+.+ ++|..+...++.+|++
T Consensus 479 s~leel~k~n-~~d~~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 479 SLLEELVKFN-PNDTDLLVQLVTAYAR 504 (652)
T ss_pred HHHHHHHHhC-CchHHHHHHHHHHHHh
Confidence 9999999842 6889999999998874
No 221
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.40 E-value=0.19 Score=25.25 Aligned_cols=27 Identities=15% Similarity=-0.020 Sum_probs=12.8
Q ss_pred HHHHHHHhccccchhhHHHHHHHHHHh
Q 036068 75 IVSILTARANLRALDLGEWIKTYIDKN 101 (178)
Q Consensus 75 ~~~ll~~~~~~~~~~~a~~~~~~m~~~ 101 (178)
+..+-.++.+.|++++|.++++...+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444444445555555555444444
No 222
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.38 E-value=0.81 Score=29.34 Aligned_cols=84 Identities=8% Similarity=0.128 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 84 (178)
.-..++..+.+.+.......+++.+.+ .+....+.++..|++.+. ++..+.++. . ++......+++.|.+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~ 81 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEK 81 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHH
Confidence 346788999889999999999998754 367789999999998753 555555552 1 233444557888888
Q ss_pred ccchhhHHHHHHHH
Q 036068 85 LRALDLGEWIKTYI 98 (178)
Q Consensus 85 ~~~~~~a~~~~~~m 98 (178)
.+-++++..++..+
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 88888877777655
No 223
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.09 E-value=0.73 Score=33.12 Aligned_cols=97 Identities=10% Similarity=0.051 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCC--C----ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCC-CCCcH-HHHHHHH
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPE--R----DYVLWTAMIDGYLRVNRFREALTLFQEMQTSN-IMGDE-FTIVSIL 79 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~-~~~~~ll 79 (178)
.|+.-+.. .+.|++..|..-|....+ | ....+==|-.++...|++++|...|..+.+.- -.|.. ..+..|-
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 57766654 467889999999988764 1 22333347889999999999999999987642 22222 5777888
Q ss_pred HHhccccchhhHHHHHHHHHHhCccc
Q 036068 80 TARANLRALDLGEWIKTYIDKNKVKN 105 (178)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~m~~~~~~~ 105 (178)
.+..+.|+.++|...|+++.+.-+..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 88899999999999999999876543
No 224
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=94.04 E-value=2.8 Score=34.68 Aligned_cols=117 Identities=13% Similarity=0.018 Sum_probs=89.5
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHh
Q 036068 40 WTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119 (178)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 119 (178)
|...-..+.+.+..++|..++.+..... .-....|...-..+...|..++|.+.|.......+. ++...+++-..+.+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 4455667778888888888888876553 345566666666777888899999988877765533 46677888888888
Q ss_pred cCChhhhc-------------cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 120 CADVEKAQ-------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 120 ~~~~~~a~-------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
.|+..-+. .+...|-.+-..+-+.|+.+.|.+.|.-..+
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 88766555 4788999999999999999999999987654
No 225
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=94.02 E-value=3 Score=34.52 Aligned_cols=97 Identities=13% Similarity=0.117 Sum_probs=68.6
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCC-cHHHHHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG-DEFTIVSIL 79 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll 79 (178)
.|...|..+.-+..+.|++..+-+.|++... .-...|+.+--.|...|....|..+++.-....-.| +...+-..-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 5778899999999999999999999998654 356678888888899999888988887754332123 334444444
Q ss_pred HHhc-cccchhhHHHHHHHHHH
Q 036068 80 TARA-NLRALDLGEWIKTYIDK 100 (178)
Q Consensus 80 ~~~~-~~~~~~~a~~~~~~m~~ 100 (178)
+.|. +.+..+++..+-....+
T Consensus 401 klc~e~l~~~eegldYA~kai~ 422 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAIS 422 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHH
Confidence 4443 45666666666655554
No 226
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.02 E-value=2.3 Score=33.23 Aligned_cols=111 Identities=11% Similarity=0.147 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCC-----CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHH-HHHHHHH
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPE-----RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFT-IVSILTA 81 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~ll~~ 81 (178)
+|...+....+..-+..|..+|-+.++ +++..++..|..++. |+..-|..+|+.=... -||... -...+..
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~f 475 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 455555555555556666666655543 355556666655543 3445555555553222 123222 2334444
Q ss_pred hccccchhhHHHHHH----HHHHhCcccchHHHHHHHHHHHhcCChh
Q 036068 82 RANLRALDLGEWIKT----YIDKNKVKNDIFAGNALIDMYCICADVE 124 (178)
Q Consensus 82 ~~~~~~~~~a~~~~~----~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 124 (178)
+.+.++-+.|..+|+ ++.+... -..|..+|+.-.+.|++.
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~---k~iy~kmi~YEs~~G~lN 519 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQL---KRIYDKMIEYESMVGSLN 519 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhh---hHHHHHHHHHHHhhcchH
Confidence 555555555555555 2222211 224555555555555544
No 227
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.01 E-value=0.8 Score=37.59 Aligned_cols=102 Identities=16% Similarity=0.146 Sum_probs=67.1
Q ss_pred HHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchh
Q 036068 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALD 89 (178)
Q Consensus 10 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 89 (178)
+--+.-+..-|+-.+|.++-.+.+-||-..|-.=+.+++..++|++-+++-+.++ ++.-|..+..+|.+.|+.+
T Consensus 688 ~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~ 761 (829)
T KOG2280|consen 688 HDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKD 761 (829)
T ss_pred HHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHH
Confidence 4445566677777778888777777777777777777777777776655444332 1345666777777888887
Q ss_pred hHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhh
Q 036068 90 LGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126 (178)
Q Consensus 90 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 126 (178)
+|.+++..... +.-.+.+|.+.|++.+|
T Consensus 762 EA~KYiprv~~---------l~ekv~ay~~~~~~~eA 789 (829)
T KOG2280|consen 762 EAKKYIPRVGG---------LQEKVKAYLRVGDVKEA 789 (829)
T ss_pred HHhhhhhccCC---------hHHHHHHHHHhccHHHH
Confidence 77777533211 11456667777766654
No 228
>PRK15331 chaperone protein SicA; Provisional
Probab=93.88 E-value=1.2 Score=29.62 Aligned_cols=75 Identities=15% Similarity=-0.038 Sum_probs=42.2
Q ss_pred ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHH
Q 036068 83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALD 151 (178)
Q Consensus 83 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~ 151 (178)
-..|++++|+.+|..+.-.++. +..-|-.|-.++-..+++++|. .|+..+-..-.++...|+.++|..
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHH
Confidence 4556666666666666554432 2333455555555556666655 345555555566666666666666
Q ss_pred HHHHHHH
Q 036068 152 MFSQMLR 158 (178)
Q Consensus 152 ~~~~m~~ 158 (178)
.|....+
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 6665554
No 229
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.79 E-value=0.19 Score=24.53 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 131 FSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 131 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
.+++.|...|...|++++|.+++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4788999999999999999999999875
No 230
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.77 E-value=1.4 Score=33.27 Aligned_cols=141 Identities=10% Similarity=0.073 Sum_probs=78.9
Q ss_pred HHHHHhcCChhHHHHHhccCCC---CChhHHHHHH-HHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccch
Q 036068 13 VSRYINRGQVDIARQCFDQMPE---RDYVLWTAMI-DGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88 (178)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 88 (178)
++-+...+++..|..+++.-.. ......+..| ..+...|++++|...+.-+.... .|+...+..+.-+..-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 5566677788888887775432 1122333333 35567788888888887766643 45555555555555666777
Q ss_pred hhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 89 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
.+|.++-... +-++.--..+...--|.++-++.. ....---.|.+.---.-.+.+|.++|++.+..
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777664322 223444445555555666655433 11111112222222234567888899888765
No 231
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=93.73 E-value=0.55 Score=39.85 Aligned_cols=117 Identities=15% Similarity=0.076 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH--H
Q 036068 39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID--M 116 (178)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~--~ 116 (178)
.|..|-..|+..-+...|..+|++..+.. .-+........+.|++..+++.|..+.-...+.. +.....+|..-. .
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhcccc
Confidence 34455555554445555555555544432 1234445555556666666666555521111110 000111111111 1
Q ss_pred HHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 036068 117 YCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQML 157 (178)
Q Consensus 117 ~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 157 (178)
|-+.++..++. .|...|..+..+|...|++..|..+|.+..
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 22333333332 367777777777777777777777776654
No 232
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.73 E-value=2.7 Score=35.44 Aligned_cols=56 Identities=13% Similarity=0.120 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCC------------------------CChhHHHHHHHHHhhcCChhHHHHHHHHh
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPE------------------------RDYVLWTAMIDGYLRVNRFREALTLFQEM 63 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m 63 (178)
.|.=+-..+-..|+.+.|+.+|...+. .|....-.|-+.|...|++.+|..+|.+.
T Consensus 914 L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 914 LYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 333345555667888888888876652 26666667888888889999998888764
No 233
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.65 E-value=2.7 Score=32.85 Aligned_cols=133 Identities=13% Similarity=0.062 Sum_probs=94.2
Q ss_pred ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCC-CCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHH
Q 036068 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSN-IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALI 114 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 114 (178)
-...|...|....+..-.+.|..+|-+..+.| +.+++..++++|..++. |+...|..+|+.=...- .-++.--+..+
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f-~d~~~y~~kyl 473 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKF-PDSTLYKEKYL 473 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhC-CCchHHHHHHH
Confidence 45578888888888888999999999999988 68889999999998875 57888889887543332 22233344556
Q ss_pred HHHHhcCChhhhc-----------cc--hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHH
Q 036068 115 DMYCICADVEKAQ-----------KD--KFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172 (178)
Q Consensus 115 ~~~~~~~~~~~a~-----------~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 172 (178)
..+.+.++-+.|. .+ ...|..+|.--..-|+...|..+=++|.+. -|-..+...+.
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~ 542 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFT 542 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHH
Confidence 6666666655554 23 567888888888888888888777777653 44444444433
No 234
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=93.54 E-value=2.9 Score=35.83 Aligned_cols=150 Identities=15% Similarity=0.094 Sum_probs=100.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCC-CCCcHHHHHHHHHHhc
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN-IMGDEFTIVSILTARA 83 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~ 83 (178)
.|..|-..|..--+...|...|++..+ .+...+..+...|++..+++.|..+.-.--+.. .......|.-.--.+.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL 573 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL 573 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence 466666667666677778888876654 477788889999999999999998832221111 0111122222223356
Q ss_pred cccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc---------cchhhHHHHH--HHHHhcCChhHHHHH
Q 036068 84 NLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ---------KDKFSWTTMI--VGLAISGNGDKALDM 152 (178)
Q Consensus 84 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~---------~~~~~~~~li--~~~~~~~~~~~a~~~ 152 (178)
+.++..++..-|+......+ .|...|..+..+|.+.|.+..|. +....|.... ..-|..|.+++++..
T Consensus 574 ea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~ 652 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDA 652 (1238)
T ss_pred CccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 77777778777777766653 47888999999999999998887 3344444443 334567888888888
Q ss_pred HHHHHH
Q 036068 153 FSQMLR 158 (178)
Q Consensus 153 ~~~m~~ 158 (178)
+.....
T Consensus 653 l~~ii~ 658 (1238)
T KOG1127|consen 653 LGLIIY 658 (1238)
T ss_pred HHHHHH
Confidence 777653
No 235
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.47 E-value=1.6 Score=30.09 Aligned_cols=79 Identities=14% Similarity=0.043 Sum_probs=58.5
Q ss_pred HHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHH---hCcccchHHHHHHHHHHHhcCC
Q 036068 46 GYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK---NKVKNDIFAGNALIDMYCICAD 122 (178)
Q Consensus 46 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~ll~~~~~~~~ 122 (178)
.+.+.|+ +.|.+.|-++...+..-++..-..+...|. ..+.+++.+++....+ .+-.+++..+.+|...|.+.|+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3445565 778888888888877667777777777776 4578888888876654 2336788888899998888888
Q ss_pred hhhh
Q 036068 123 VEKA 126 (178)
Q Consensus 123 ~~~a 126 (178)
++.|
T Consensus 194 ~e~A 197 (203)
T PF11207_consen 194 YEQA 197 (203)
T ss_pred hhhh
Confidence 8865
No 236
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.46 E-value=0.52 Score=39.10 Aligned_cols=109 Identities=13% Similarity=0.077 Sum_probs=54.4
Q ss_pred HHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHH----hhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcccc
Q 036068 11 AIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGY----LRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLR 86 (178)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 86 (178)
.-|+.+.+...+..|..+.+.-.. |..+-..++..| .+.|+.++|..-|-+-... +.|. .+++-|....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq 411 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHH
Confidence 345666666777777776665443 222333333322 3456666666555443221 1111 1344444445
Q ss_pred chhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 87 ALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 87 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
++.+-..+++.+.+.|.. +...-+.|+.+|.|.++.++..
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ 451 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLT 451 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHH
Confidence 555555555555555543 2333455555666555555443
No 237
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.39 E-value=3.1 Score=32.60 Aligned_cols=112 Identities=17% Similarity=0.140 Sum_probs=78.0
Q ss_pred HHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhH
Q 036068 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLG 91 (178)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 91 (178)
-.+...+.|+++.|.++.++.. +...|..|-....+.|+++-|.++|++... |..++-.|.-.|+.+..
T Consensus 324 rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 324 RFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred HhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHH
Confidence 3456678999999999999887 566999999999999999999999998532 45566677777887777
Q ss_pred HHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHH
Q 036068 92 EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKAL 150 (178)
Q Consensus 92 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~ 150 (178)
.++.+.....|- +|.....+...|+.++ -+..+.+.|++.+|-
T Consensus 393 ~kl~~~a~~~~~------~n~af~~~~~lgd~~~----------cv~lL~~~~~~~~A~ 435 (443)
T PF04053_consen 393 SKLAKIAEERGD------INIAFQAALLLGDVEE----------CVDLLIETGRLPEAA 435 (443)
T ss_dssp HHHHHHHHHTT-------HHHHHHHHHHHT-HHH----------HHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHccC------HHHHHHHHHHcCCHHH----------HHHHHHHcCCchHHH
Confidence 777766666652 4444555555566553 345556666666554
No 238
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.38 E-value=0.94 Score=36.88 Aligned_cols=117 Identities=11% Similarity=0.027 Sum_probs=69.4
Q ss_pred CChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHH
Q 036068 20 GQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYID 99 (178)
Q Consensus 20 ~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 99 (178)
|-.+.+.++-+++...+..+...+-..+.+...+..|-++|++|-.. ..+.+.....+++++|+.+-+..-
T Consensus 730 gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 730 GWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred cHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCc
Confidence 33333333333444445555555555555566666777777766332 235666777778888777654332
Q ss_pred HhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 100 KNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 100 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
+ .-+.+|-.--+-++...++++| -.+|-+.|+-.+|.++++++...
T Consensus 801 e----~~~dVy~pyaqwLAE~DrFeEA----------qkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 801 E----FKDDVYMPYAQWLAENDRFEEA----------QKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred c----ccccccchHHHHhhhhhhHHHH----------HHHHHHhcchHHHHHHHHHhhhh
Confidence 2 2233344444445555555554 46788999999999999998764
No 239
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.33 E-value=3 Score=32.27 Aligned_cols=151 Identities=13% Similarity=0.029 Sum_probs=107.1
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCC--CC-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHH-HHH
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSI-LTA 81 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-l~~ 81 (178)
+..|-.=-..+...|+.++|.--|+... .| +...|.-|++.|...|.+.+|.-.-+...+. +.-++.+.+.+ ...
T Consensus 334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V 412 (564)
T KOG1174|consen 334 HEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLV 412 (564)
T ss_pred chHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhccee
Confidence 3344434466778999999999998755 44 8899999999999999999988766553332 23455665544 233
Q ss_pred hccc-cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cchhhHHHHHHHHHhcCChhHHH
Q 036068 82 RANL-RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KDKFSWTTMIVGLAISGNGDKAL 150 (178)
Q Consensus 82 ~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~~~~~~~li~~~~~~~~~~~a~ 150 (178)
|... .--++|..+++.-.+..+.. ....+.+...+..-|..+++. +|...-+.|-+.++..+.+.+|.
T Consensus 413 ~~~dp~~rEKAKkf~ek~L~~~P~Y-~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am 491 (564)
T KOG1174|consen 413 LFPDPRMREKAKKFAEKSLKINPIY-TPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAM 491 (564)
T ss_pred eccCchhHHHHHHHHHhhhccCCcc-HHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHH
Confidence 4333 33467888877666554332 445566777777778877776 78888899999999999999999
Q ss_pred HHHHHHHH
Q 036068 151 DMFSQMLR 158 (178)
Q Consensus 151 ~~~~~m~~ 158 (178)
+.|...++
T Consensus 492 ~~y~~ALr 499 (564)
T KOG1174|consen 492 EYYYKALR 499 (564)
T ss_pred HHHHHHHh
Confidence 98887765
No 240
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=93.03 E-value=3 Score=31.48 Aligned_cols=112 Identities=13% Similarity=0.073 Sum_probs=83.1
Q ss_pred HHhhcCChhHHHHHHHHhHhCCC------------CCcH--HHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHH
Q 036068 46 GYLRVNRFREALTLFQEMQTSNI------------MGDE--FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGN 111 (178)
Q Consensus 46 ~~~~~~~~~~a~~~~~~m~~~~~------------~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 111 (178)
.+.+.|.++.|..=|+..+.+.- .+.. +.....+..+...|+...|+.....+.+.. +.+...+.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~ 193 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQ 193 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHH
Confidence 45677889999998988877631 1111 122234455667789999999999988875 56888888
Q ss_pred HHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 112 ALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 112 ~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
.-..+|...|++..|. .+..++--+-..+-..|+.+.++...++.++
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 8999999999999987 3566666666777788888888888887775
No 241
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.84 E-value=2 Score=28.82 Aligned_cols=24 Identities=8% Similarity=-0.115 Sum_probs=10.8
Q ss_pred HhCCCCCcHHHHHHHHHHhccccc
Q 036068 64 QTSNIMGDEFTIVSILTARANLRA 87 (178)
Q Consensus 64 ~~~~~~~~~~~~~~ll~~~~~~~~ 87 (178)
.+.++.|+...+..+++.+.+.|+
T Consensus 21 ~~~~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 21 NQHNIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCC
Confidence 334444444444444444444444
No 242
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.78 E-value=2.4 Score=30.98 Aligned_cols=105 Identities=14% Similarity=0.012 Sum_probs=59.2
Q ss_pred cCChhHHHHHhccCCC-----CChhHHHHHHHHHhhcCC--hhHHHHHHHHhHh-CCCCCcHHHHHHHHHHhccccchhh
Q 036068 19 RGQVDIARQCFDQMPE-----RDYVLWTAMIDGYLRVNR--FREALTLFQEMQT-SNIMGDEFTIVSILTARANLRALDL 90 (178)
Q Consensus 19 ~~~~~~a~~~~~~m~~-----~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~~~~~~ 90 (178)
+..+.+|+.+|+...- .|..+-..|++......+ ...-.++.+.+.. .|..++..+...+++.+++.+++++
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 4445667777773221 366677777776665221 2222223333322 2346677777778888888888888
Q ss_pred HHHHHHHHHHh-CcccchHHHHHHHHHHHhcCCh
Q 036068 91 GEWIKTYIDKN-KVKNDIFAGNALIDMYCICADV 123 (178)
Q Consensus 91 a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~ 123 (178)
..+++...... ++..|...|...|......|+.
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~ 254 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQ 254 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCH
Confidence 77777666554 4444455555555444444443
No 243
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.68 E-value=1 Score=35.50 Aligned_cols=76 Identities=14% Similarity=0.007 Sum_probs=47.8
Q ss_pred hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cc-hhhHHHHHHHHHhcCChhHHH
Q 036068 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KD-KFSWTTMIVGLAISGNGDKAL 150 (178)
Q Consensus 82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~-~~~~~~li~~~~~~~~~~~a~ 150 (178)
.+..|+++.|..+|...+...+. +-..|..-..+|.+.|++++|. |+ ...|+-.-.+..-.|++++|+
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHH
Confidence 44556666666666665554432 4445566666666666666665 33 345666666777778888888
Q ss_pred HHHHHHHH
Q 036068 151 DMFSQMLR 158 (178)
Q Consensus 151 ~~~~~m~~ 158 (178)
.-|.+-++
T Consensus 91 ~ay~~GL~ 98 (539)
T KOG0548|consen 91 LAYSEGLE 98 (539)
T ss_pred HHHHHHhh
Confidence 88877665
No 244
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=92.61 E-value=1.7 Score=27.42 Aligned_cols=101 Identities=15% Similarity=0.021 Sum_probs=69.8
Q ss_pred HHHHHHhcCChhHHHHHhccCCCC---C---hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc----HHHHHHHHHH
Q 036068 12 IVSRYINRGQVDIARQCFDQMPER---D---YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD----EFTIVSILTA 81 (178)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~---~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~ 81 (178)
+-.++-..|+.++|+.+|++.... + ...+--+-..+...|++++|..+|++..... |+ ......+.-+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 456677899999999999976542 2 2345557778889999999999999987652 33 2222233446
Q ss_pred hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH
Q 036068 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC 118 (178)
Q Consensus 82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 118 (178)
+...|+.++|.+.+-.... ++..-|.--|..|.
T Consensus 85 L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 7888999999888755443 23335666666554
No 245
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=92.50 E-value=3.1 Score=30.31 Aligned_cols=118 Identities=9% Similarity=0.022 Sum_probs=62.7
Q ss_pred hHHHHHHHHHhhcCChhHHHHHHHHhH---hCCCCCc--HHHHHHHHHHhccccchhhHHHHHHHHHHh------Ccccc
Q 036068 38 VLWTAMIDGYLRVNRFREALTLFQEMQ---TSNIMGD--EFTIVSILTARANLRALDLGEWIKTYIDKN------KVKND 106 (178)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~~~~~m~---~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~~~~ 106 (178)
..|......+.+.++...|-..|.+.- +.+ .|+ +..|...+..|.+.|++..+-+++..+-+. .++.-
T Consensus 56 ~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~A 134 (282)
T PF14938_consen 56 EAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKA 134 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 344455555555555444444443321 111 222 234455555566666666665555544321 11222
Q ss_pred hHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 107 IFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 107 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
...|...+..|...|.... -..++..+...+.+.|++++|.++|++....
T Consensus 135 i~~Y~~A~~~y~~e~~~~~---a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 135 IEYYQKAAELYEQEGSPHS---AAECLLKAADLYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHH---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCChhh---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3445555555555553332 2456677888899999999999999998764
No 246
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=92.50 E-value=2 Score=28.05 Aligned_cols=98 Identities=18% Similarity=0.128 Sum_probs=68.3
Q ss_pred hHhCCCCCcH--HHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHH
Q 036068 63 MQTSNIMGDE--FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGL 140 (178)
Q Consensus 63 m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~ 140 (178)
|.+.+..++. ...+.++.-....+.+....++++.+..- ..-.-.|. .+...|++++.+.
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l-------------~~~~~~~~-----~~~ssf~~if~Sl 89 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFL-------------NTDNIIGW-----LDNSSFHIIFKSL 89 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHh-------------hHHHHhhh-----cccchHHHHHHHH
Confidence 4545555554 34667777777777888888888777111 11000111 3566889999999
Q ss_pred HhcCC-hhHHHHHHHHHHHcCCCCChhHHHHHHhhhhcC
Q 036068 141 AISGN-GDKALDMFSQMLRASIKPDEVAYVGVLSACTHN 178 (178)
Q Consensus 141 ~~~~~-~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~~ 178 (178)
.+..- ---+..+|+-|++.+.+++..-|..+|.+|.++
T Consensus 90 snSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 90 SNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 77766 456788999999988999999999999998764
No 247
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.34 E-value=1.5 Score=32.00 Aligned_cols=86 Identities=7% Similarity=0.028 Sum_probs=66.6
Q ss_pred CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhC-CCCCcHHHHHHHHHHhccccchhhHHHHHHH-----HHHhCcccch
Q 036068 34 ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTS-NIMGDEFTIVSILTARANLRALDLGEWIKTY-----IDKNKVKNDI 107 (178)
Q Consensus 34 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-----m~~~~~~~~~ 107 (178)
.++..+...+|..+++.++|.+-+++|+..... +..-|...|..+|+...+.|+..-...+... +.+.|+..+.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~ 278 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTD 278 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCH
Confidence 458888889999999999999999999887555 5566788899999999999998888777752 4466677766
Q ss_pred HHHHHHHHHHHh
Q 036068 108 FAGNALIDMYCI 119 (178)
Q Consensus 108 ~~~~~ll~~~~~ 119 (178)
..-..+-..+-+
T Consensus 279 ~L~~~L~~LF~~ 290 (292)
T PF13929_consen 279 ELRSQLSELFKK 290 (292)
T ss_pred HHHHHHHHHHHh
Confidence 666666555544
No 248
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.32 E-value=1 Score=32.63 Aligned_cols=120 Identities=9% Similarity=0.049 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHhccCC----CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHH---
Q 036068 7 ISWTAIVSRYINRGQVDIARQCFDQMP----ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL--- 79 (178)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll--- 79 (178)
.+-+.++..+.-.|.+.-...++++.. +.++.....|.+.-.+.||.+.|...|++..+..-..|..+++.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 345667777777777766666666554 3477778888888888888888888888776544444544444443
Q ss_pred --HHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 80 --TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 80 --~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
..+.-.+++..|...+.+....... ++...|.=.-...-.|+..+|.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAi 306 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDAL 306 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHH
Confidence 3445556677777777767665532 3333333333344456666665
No 249
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=92.18 E-value=0.78 Score=23.68 Aligned_cols=38 Identities=8% Similarity=0.068 Sum_probs=32.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhh
Q 036068 137 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174 (178)
Q Consensus 137 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a 174 (178)
+....+.|-..++..++++|.+.|+..+...|..+++-
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 34456788899999999999999999999999988864
No 250
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=91.91 E-value=4.3 Score=30.68 Aligned_cols=111 Identities=10% Similarity=0.069 Sum_probs=65.8
Q ss_pred HHHhcCChhHHHHHhccCCCCC----------------hhHHH--HHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHH
Q 036068 15 RYINRGQVDIARQCFDQMPERD----------------YVLWT--AMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIV 76 (178)
Q Consensus 15 ~~~~~~~~~~a~~~~~~m~~~~----------------~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 76 (178)
.+.+.|.++.|..=|+...+.+ ...|+ ..+..+...|+..-|+.....+++-. +-|+..+-
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~ 193 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQ 193 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHH
Confidence 4567788888777777664311 11122 23445566677777877777777754 44666666
Q ss_pred HHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 77 SILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 77 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
.-..+|...|++..|..=++...+..-. ++.++--+-..+...|+.+.++
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL 243 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSL 243 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHH
Confidence 6677777777777776655554443322 3444444555555566655554
No 251
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=91.88 E-value=1.6 Score=28.43 Aligned_cols=69 Identities=4% Similarity=-0.031 Sum_probs=56.4
Q ss_pred HHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 58 TLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 58 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
++.+.+++.|++++..= ..+++.+.+.++.-.|.++++.+.+.++..+..|.-.-++.+...|-+....
T Consensus 7 ~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~~~~ 75 (145)
T COG0735 7 DAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVHRLE 75 (145)
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEEEEE
Confidence 34566777888877543 5678888888888999999999999999999888888889999998877665
No 252
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.83 E-value=2.6 Score=27.97 Aligned_cols=91 Identities=12% Similarity=0.016 Sum_probs=52.7
Q ss_pred HHHHHHhcCChhHHHHHhccCC--CCChhHHHHH-HHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccch
Q 036068 12 IVSRYINRGQVDIARQCFDQMP--ERDYVLWTAM-IDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88 (178)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 88 (178)
++..-.+.++.+++..++.-++ .|......++ -..+...|+|.+|.++|+++.+.. |...-...|+-.|... .-
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~-~~ 92 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYA-LG 92 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHH-cC
Confidence 3444556788999999998876 3533333222 234567889999999999987764 4433334444444322 22
Q ss_pred hhHHHHH-HHHHHhCccc
Q 036068 89 DLGEWIK-TYIDKNKVKN 105 (178)
Q Consensus 89 ~~a~~~~-~~m~~~~~~~ 105 (178)
+..++.+ +++...+..|
T Consensus 93 D~~Wr~~A~evle~~~d~ 110 (160)
T PF09613_consen 93 DPSWRRYADEVLESGADP 110 (160)
T ss_pred ChHHHHHHHHHHhcCCCh
Confidence 3334444 3455555444
No 253
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.79 E-value=0.54 Score=22.77 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=12.6
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHh
Q 036068 39 LWTAMIDGYLRVNRFREALTLFQEM 63 (178)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m 63 (178)
+++.|-..|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 4445555555555555555555553
No 254
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.73 E-value=0.62 Score=21.59 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 131 FSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 131 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
.+|..+...+...|++++|++.|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46788889999999999999999998864
No 255
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.52 E-value=4 Score=31.50 Aligned_cols=143 Identities=9% Similarity=-0.069 Sum_probs=90.8
Q ss_pred HHHhcCChhHHHHHhccCCC-CChhHHHHHHHHHh--hcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH-----------
Q 036068 15 RYINRGQVDIARQCFDQMPE-RDYVLWTAMIDGYL--RVNRFREALTLFQEMQTSNIMGDEFTIVSILT----------- 80 (178)
Q Consensus 15 ~~~~~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~----------- 80 (178)
++.-.|+++.|.+.--...+ .....+...+++.+ -.++.+.+..-|++-++.+ |+...-.+.-.
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhh
Confidence 44456666666665554443 23334555555443 4567788888888876653 55443332222
Q ss_pred --HhccccchhhHHHHHHHHHHhC---cccchHHHHHHHHHHHhcCChhhhc---------cchhhHHHHHHHHH--hcC
Q 036068 81 --ARANLRALDLGEWIKTYIDKNK---VKNDIFAGNALIDMYCICADVEKAQ---------KDKFSWTTMIVGLA--ISG 144 (178)
Q Consensus 81 --~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~---------~~~~~~~~li~~~~--~~~ 144 (178)
-..+.|.+..|.+.|.+.+... .+++...|-.......+.|+.++|. .+...+-.+.++-| ..+
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 2256688999999999887643 4556666777777788899999987 23444444444444 358
Q ss_pred ChhHHHHHHHHHHHc
Q 036068 145 NGDKALDMFSQMLRA 159 (178)
Q Consensus 145 ~~~~a~~~~~~m~~~ 159 (178)
+|++|.+-|++..+.
T Consensus 336 ~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHhh
Confidence 889999888877654
No 256
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=91.28 E-value=1.7 Score=27.69 Aligned_cols=59 Identities=8% Similarity=-0.017 Sum_probs=46.0
Q ss_pred HHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068 56 ALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID 115 (178)
Q Consensus 56 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 115 (178)
..+.++.+....+.|+......-+++|.+.+|+..|..+++.++..- .+.-.+|..++.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~-g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC-GAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc-ccHHHHHHHHHH
Confidence 45566777778899999999999999999999999999999887542 222335666554
No 257
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.90 E-value=0.82 Score=23.17 Aligned_cols=25 Identities=16% Similarity=0.376 Sum_probs=15.8
Q ss_pred HHHHHhhcCChhHHHHHHHHhHhCC
Q 036068 43 MIDGYLRVNRFREALTLFQEMQTSN 67 (178)
Q Consensus 43 li~~~~~~~~~~~a~~~~~~m~~~~ 67 (178)
|-.+|...|+.+.|.++++++...|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4456666666666666666666544
No 258
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.86 E-value=3.6 Score=31.42 Aligned_cols=89 Identities=12% Similarity=0.126 Sum_probs=69.5
Q ss_pred HHHHhcCChhHHHHHhccCCC------------------CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHH
Q 036068 14 SRYINRGQVDIARQCFDQMPE------------------RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTI 75 (178)
Q Consensus 14 ~~~~~~~~~~~a~~~~~~m~~------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 75 (178)
..+.+.|++..|...|++..+ .-..++.-|.-.+.+.+++.+|+..=++.+..+ .+|.-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 467889999998888776431 133456677788889999999999888888876 4566666
Q ss_pred HHHHHHhccccchhhHHHHHHHHHHhCc
Q 036068 76 VSILTARANLRALDLGEWIKTYIDKNKV 103 (178)
Q Consensus 76 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 103 (178)
--=-+++...++++.|...|+.+++-.+
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 6667788999999999999999988653
No 259
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=90.76 E-value=3.6 Score=28.04 Aligned_cols=94 Identities=10% Similarity=0.020 Sum_probs=57.8
Q ss_pred hhHHHHHHHHhHhCCCCCc--HHHHHH-----HHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhh
Q 036068 53 FREALTLFQEMQTSNIMGD--EFTIVS-----ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK 125 (178)
Q Consensus 53 ~~~a~~~~~~m~~~~~~~~--~~~~~~-----ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 125 (178)
.+.|..+|+.+.+.--.|. ...... .+-.|.+.|.+++|.++++++.. .|+......-+....+..+...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd~~h 161 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKDPAH 161 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHcccccc
Confidence 5789999999877643331 122222 33468999999999999999987 3455555666666666555443
Q ss_pred hccchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 126 AQKDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 126 a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
.++..+.-..-.++..++++.-.+
T Consensus 162 ---------~~lqnFSy~~~~~ki~~~ve~~~~ 185 (200)
T cd00280 162 ---------PVLQNFSYSHFMQKMKSYVELVLD 185 (200)
T ss_pred ---------HHHHhccHHHHHHHHHHHHHHHhc
Confidence 344444333333455555555443
No 260
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.74 E-value=2.5 Score=34.92 Aligned_cols=107 Identities=11% Similarity=0.060 Sum_probs=77.9
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH
Q 036068 39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC 118 (178)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 118 (178)
+.+--+.-+...|+..+|.++-.+.+ .||...|.-=+.+++..+++++-+++-+.. .++--|...+..+.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk------ksPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK------KSPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc------CCCCCchhHHHHHH
Confidence 34445556677788888877655543 588899999999999999998777663332 22445777888999
Q ss_pred hcCChhhhc---cchhhHHHHHHHHHhcCChhHHHHHHHH
Q 036068 119 ICADVEKAQ---KDKFSWTTMIVGLAISGNGDKALDMFSQ 155 (178)
Q Consensus 119 ~~~~~~~a~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ 155 (178)
+.|+.++|. |-..-+.-...+|.+.|++.+|-++--+
T Consensus 756 ~~~n~~EA~KYiprv~~l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGLQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hcccHHHHhhhhhccCChHHHHHHHHHhccHHHHHHHHHH
Confidence 999999998 3333444688999999999988875433
No 261
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.59 E-value=5.4 Score=29.33 Aligned_cols=110 Identities=14% Similarity=0.154 Sum_probs=47.1
Q ss_pred hhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHh---cCChh
Q 036068 48 LRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI---CADVE 124 (178)
Q Consensus 48 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~---~~~~~ 124 (178)
...|+..+|..+|+......-. +...-..+..+|...|+.+.|..++..+-..--.........-|..+.+ .++..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 3445555555555554443211 2233344555555555555555555544322211111111121222222 22222
Q ss_pred hhc------c-chhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 125 KAQ------K-DKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 125 ~a~------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
... | |...--.+...+...|+.+.|++.+=.+.+
T Consensus 224 ~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 224 DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222 2 334444455566666666666665544443
No 262
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.56 E-value=5.1 Score=28.96 Aligned_cols=88 Identities=19% Similarity=0.039 Sum_probs=53.0
Q ss_pred HHHHHHHhccccchhhHHHHHHHHHHhCcc--cchHHHHHHHHHHHhcCChhhhc--------------cchhhHHHHHH
Q 036068 75 IVSILTARANLRALDLGEWIKTYIDKNKVK--NDIFAGNALIDMYCICADVEKAQ--------------KDKFSWTTMIV 138 (178)
Q Consensus 75 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~--------------~~~~~~~~li~ 138 (178)
|+.-+..+. .|++.+|++-|...++..+. ..+..+-.|-.++...|++++|. .-...+--|-.
T Consensus 145 Y~~A~~~~k-sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDLYK-SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 444444333 33466666666655554432 22444555556666666666654 12345556677
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCh
Q 036068 139 GLAISGNGDKALDMFSQMLRASIKPDE 165 (178)
Q Consensus 139 ~~~~~~~~~~a~~~~~~m~~~g~~p~~ 165 (178)
...+.|+.++|-.+|++..+. -|+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~--YP~t 248 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR--YPGT 248 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH--CCCC
Confidence 788899999999999998875 4544
No 263
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.51 E-value=3.5 Score=27.06 Aligned_cols=88 Identities=11% Similarity=0.038 Sum_probs=52.0
Q ss_pred HHHhcCChhHHHHHhccCC--CC---ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchh
Q 036068 15 RYINRGQVDIARQCFDQMP--ER---DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALD 89 (178)
Q Consensus 15 ~~~~~~~~~~a~~~~~~m~--~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 89 (178)
.-...++.+++..+++.|+ .| ...++... .+...|+|++|.++|+++.+.+.. ..|..-+.++|-...-|
T Consensus 19 ~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~~~---~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 19 YALRSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSAGA---PPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccCCC---chHHHHHHHHHHHhcCC
Confidence 3345888999999998876 34 34444443 356788999999999999887522 24444444444333333
Q ss_pred hHHHHH-HHHHHhCcccch
Q 036068 90 LGEWIK-TYIDKNKVKNDI 107 (178)
Q Consensus 90 ~a~~~~-~~m~~~~~~~~~ 107 (178)
-.++.+ +.+...+-+++.
T Consensus 94 p~Wr~~A~~~le~~~~~~a 112 (153)
T TIGR02561 94 AEWHVHADEVLARDADADA 112 (153)
T ss_pred hHHHHHHHHHHHhCCCHhH
Confidence 333333 334444444443
No 264
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.31 E-value=5.2 Score=28.72 Aligned_cols=70 Identities=11% Similarity=0.124 Sum_probs=45.3
Q ss_pred HHHHHhcCChhHHHHHhccCCCC------ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC-CCCCcHHHHHHHHHHhc
Q 036068 13 VSRYINRGQVDIARQCFDQMPER------DYVLWTAMIDGYLRVNRFREALTLFQEMQTS-NIMGDEFTIVSILTARA 83 (178)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~ 83 (178)
...-.+.|++++|.+-|+.+.+. ...+--.++-++-+.+++++|....++..+. +-.|| .-|...|.+++
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs 117 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLS 117 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHH
Confidence 33445688888888888888742 3344555667777888888888888886654 33333 33444444443
No 265
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=90.24 E-value=0.8 Score=33.55 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=37.9
Q ss_pred cchh-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHh
Q 036068 128 KDKF-SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173 (178)
Q Consensus 128 ~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 173 (178)
+|.. -||.-|...++.||+++|+.+++|.++.|+.---.||.--+.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~ 300 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVK 300 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhh
Confidence 4444 457999999999999999999999999998877777765544
No 266
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.22 E-value=0.57 Score=21.34 Aligned_cols=28 Identities=21% Similarity=0.434 Sum_probs=22.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 036068 135 TMIVGLAISGNGDKALDMFSQMLRASIKPD 164 (178)
Q Consensus 135 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 164 (178)
.+...+.+.|++++|.+.|+++++. .|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~--~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR--YPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH--STT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH--CcC
Confidence 4556777899999999999999875 454
No 267
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.08 E-value=1.1 Score=20.53 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=23.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 132 SWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 132 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
.|..+-..+.+.|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4667788899999999999999998864
No 268
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.01 E-value=3.7 Score=26.53 Aligned_cols=51 Identities=10% Similarity=-0.156 Sum_probs=22.9
Q ss_pred HhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHH
Q 036068 47 YLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYI 98 (178)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 98 (178)
.+..|+.+.|++.|.+-...- +-....||.-.+++.-.|+.++|..=+++.
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~A 103 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKA 103 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHH
Confidence 344445555555554443321 123344555555555455544444444333
No 269
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.90 E-value=6.3 Score=29.01 Aligned_cols=111 Identities=12% Similarity=0.043 Sum_probs=80.5
Q ss_pred HHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhh
Q 036068 14 SRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDL 90 (178)
Q Consensus 14 ~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 90 (178)
......|++.+|..+|+.... .+...--.+.+.|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345678888888888887653 35666778889999999999999999998766433333343445666777777777
Q ss_pred HHHHHHHHHHhCccc-chHHHHHHHHHHHhcCChhhhc
Q 036068 91 GEWIKTYIDKNKVKN-DIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 91 a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
...+-+.+.. .| |...--.+-..+...|+.+.|.
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Al 256 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAAL 256 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 7777666655 34 5666667777888899998875
No 270
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=89.76 E-value=0.78 Score=37.01 Aligned_cols=147 Identities=10% Similarity=-0.013 Sum_probs=33.5
Q ss_pred HHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcc
Q 036068 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVK 104 (178)
Q Consensus 25 a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 104 (178)
..+++.+.+-.+...-.-++..|.+.|..+.|.++.+.+-.+-. ...-|..-+.-+.+.++.+.+..+-..+.+....
T Consensus 393 i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~ 470 (566)
T PF07575_consen 393 IEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEEYCN 470 (566)
T ss_dssp HHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---------------------
T ss_pred HHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhc
Confidence 33444444444555666777888888888888887777654422 2345667777778888887777776666654433
Q ss_pred cchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhh
Q 036068 105 NDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174 (178)
Q Consensus 105 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a 174 (178)
.+......+++......-...-.--...|.-+-.. .+.|++.+|.+.+-.+.+.+..|...-...|.++
T Consensus 471 ~~~~~~~~ll~~i~~~~~~~~~L~fla~yreF~~~-~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 471 NGEPLDDDLLDNIGSPMLLSQRLSFLAKYREFYEL-YDEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CCCcccHHHHHHhcchhhhhhhhHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 33333333333222222111111111222222222 2348888888888888888888877666665554
No 271
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=89.62 E-value=4 Score=26.39 Aligned_cols=108 Identities=10% Similarity=0.009 Sum_probs=48.6
Q ss_pred HHhcCChhHHHHHhccCCC-CChhHHHHHHHHHhhcCChhHHHHHHHHhHhC-CC----------------CCcHHHHHH
Q 036068 16 YINRGQVDIARQCFDQMPE-RDYVLWTAMIDGYLRVNRFREALTLFQEMQTS-NI----------------MGDEFTIVS 77 (178)
Q Consensus 16 ~~~~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~----------------~~~~~~~~~ 77 (178)
+.-.|.+++..+++.+... .+..-+|=+|.-....-+=+-.++.++.+-+. .+ .-+..-...
T Consensus 12 ~ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~vD~ 91 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYVDL 91 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHHHH
T ss_pred HHHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHHHH
Confidence 4457888888888887654 35555555554444433434444444443221 00 011223344
Q ss_pred HHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChh
Q 036068 78 ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124 (178)
Q Consensus 78 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 124 (178)
.+....+.|+-++-.+++..+.+.+ ++++...-.+-.+|.+.|+..
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r 137 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTR 137 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchh
Confidence 4555566666666666666665533 444554444444444444443
No 272
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=89.49 E-value=4.1 Score=26.33 Aligned_cols=89 Identities=11% Similarity=-0.124 Sum_probs=50.5
Q ss_pred HHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHH---HHHHhccccch
Q 036068 15 RYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVS---ILTARANLRAL 88 (178)
Q Consensus 15 ~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---ll~~~~~~~~~ 88 (178)
+.+..|+++.|++.|.+... .....||.--.++.-.|+.++|++=+++-.+..-.-+...+.+ --..|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 45566777777777765432 3666677777777777777777766666555322222222222 22234555666
Q ss_pred hhHHHHHHHHHHhCc
Q 036068 89 DLGEWIKTYIDKNKV 103 (178)
Q Consensus 89 ~~a~~~~~~m~~~~~ 103 (178)
+.|..=|+...+.|.
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 666666666655553
No 273
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.49 E-value=0.51 Score=22.29 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=17.8
Q ss_pred CcchhHHHHHHHHHHhcCChhHHH
Q 036068 3 NKDVISWTAIVSRYINRGQVDIAR 26 (178)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~ 26 (178)
|-|+.+|+.+-..+...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 356667788888888888887775
No 274
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.35 E-value=0.9 Score=19.86 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=11.5
Q ss_pred HHHHHHHHhcCChhHHHHHhc
Q 036068 10 TAIVSRYINRGQVDIARQCFD 30 (178)
Q Consensus 10 ~~li~~~~~~~~~~~a~~~~~ 30 (178)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344555555666666655554
No 275
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.95 E-value=1.1 Score=22.73 Aligned_cols=26 Identities=8% Similarity=0.212 Sum_probs=22.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcC
Q 036068 135 TMIVGLAISGNGDKALDMFSQMLRAS 160 (178)
Q Consensus 135 ~li~~~~~~~~~~~a~~~~~~m~~~g 160 (178)
.|..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 36789999999999999999999754
No 276
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.58 E-value=1.5 Score=20.12 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=23.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 132 SWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 132 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
+|..+-..|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 567778889999999999999999876
No 277
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.58 E-value=1.5 Score=20.17 Aligned_cols=27 Identities=19% Similarity=0.447 Sum_probs=14.4
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHhHh
Q 036068 39 LWTAMIDGYLRVNRFREALTLFQEMQT 65 (178)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 65 (178)
.|..+-..|...|++++|...|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 444555555555666666655555544
No 278
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=88.38 E-value=7.5 Score=27.94 Aligned_cols=122 Identities=11% Similarity=0.069 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHhhcCChhHHHHHHHHhHhCC--CCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHH
Q 036068 37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSN--IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALI 114 (178)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 114 (178)
...|+.-+.. .+.|++++|.+.|+.+.++. -+-...+-..++.++-+.+++++|....++..+..+.....-|-.-|
T Consensus 35 ~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 3345554444 56789999999999998763 23345677788888999999999999999998876655455566667
Q ss_pred HHHHhcCChhhhc--------------------c----------------chhhH-H-HHHHHHHhcCChhHHHHHHHHH
Q 036068 115 DMYCICADVEKAQ--------------------K----------------DKFSW-T-TMIVGLAISGNGDKALDMFSQM 156 (178)
Q Consensus 115 ~~~~~~~~~~~a~--------------------~----------------~~~~~-~-~li~~~~~~~~~~~a~~~~~~m 156 (178)
.+++..-..+... | |.... + .+..-|.+.|.+..|..-+++|
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v 193 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEV 193 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 7766555444443 1 21111 2 3346678889999999999999
Q ss_pred HHc
Q 036068 157 LRA 159 (178)
Q Consensus 157 ~~~ 159 (178)
++.
T Consensus 194 ~e~ 196 (254)
T COG4105 194 LEN 196 (254)
T ss_pred Hhc
Confidence 986
No 279
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=87.98 E-value=8.3 Score=29.57 Aligned_cols=92 Identities=8% Similarity=0.058 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHhccCC---CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHH-HHHHHh
Q 036068 7 ISWTAIVSRYINRGQVDIARQCFDQMP---ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIV-SILTAR 82 (178)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~~~ 82 (178)
.++..+..++.+.+++..|+..-++.. .+|+-..-.--.++...|+++.|+..|+++.+.. |+-.... -++.+-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHH
Confidence 467889999999999999998888654 4577666666788899999999999999998864 5544444 444444
Q ss_pred ccccchh-hHHHHHHHHHH
Q 036068 83 ANLRALD-LGEWIKTYIDK 100 (178)
Q Consensus 83 ~~~~~~~-~a~~~~~~m~~ 100 (178)
-+..+.. ...++|..|-.
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4444433 34677777754
No 280
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=87.79 E-value=5.6 Score=31.17 Aligned_cols=111 Identities=10% Similarity=0.120 Sum_probs=65.1
Q ss_pred HHHHHHHHhcCChhHHHHHhccCCCC-ChhHHHHHHHHHh--hcCChhHHHHHHHHhHhC--C------------CCCcH
Q 036068 10 TAIVSRYINRGQVDIARQCFDQMPER-DYVLWTAMIDGYL--RVNRFREALTLFQEMQTS--N------------IMGDE 72 (178)
Q Consensus 10 ~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~--~------------~~~~~ 72 (178)
+.+|++|. ..+++.+...+.+.++. ....|-.|..++. +.+++.+|.+.+..=.++ + ..+|-
T Consensus 50 grilnAff-l~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df 128 (549)
T PF07079_consen 50 GRILNAFF-LNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDF 128 (549)
T ss_pred hHHHHHHH-HhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHH
Confidence 45666666 34566666666555532 2333444444332 556777777666554332 1 12222
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHH----hCcccchHHHHHHHHHHHhcC
Q 036068 73 FTIVSILTARANLRALDLGEWIKTYIDK----NKVKNDIFAGNALIDMYCICA 121 (178)
Q Consensus 73 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~~~~~ll~~~~~~~ 121 (178)
.-=++.+.++...|++.++..+++++.. +....+..+|+.++-.+++.-
T Consensus 129 ~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSY 181 (549)
T PF07079_consen 129 FLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSY 181 (549)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHH
Confidence 3334567778888888888888877664 445578888888777666643
No 281
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=87.48 E-value=4.8 Score=24.61 Aligned_cols=75 Identities=11% Similarity=-0.001 Sum_probs=41.7
Q ss_pred hhHHHHHhccCCCC-ChhHHHHH--HHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHH
Q 036068 22 VDIARQCFDQMPER-DYVLWTAM--IDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYI 98 (178)
Q Consensus 22 ~~~a~~~~~~m~~~-~~~~~~~l--i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 98 (178)
.++|..+-+.+... +..-.-.| +.++.+.|++++|..+.+.+ ..||...|.++- -.+.|--+....-+..|
T Consensus 21 HqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~rl 94 (115)
T TIGR02508 21 HQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNRL 94 (115)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHHH
Confidence 45566665555432 11222223 34566777777777666655 357776664443 34556666666666666
Q ss_pred HHhC
Q 036068 99 DKNK 102 (178)
Q Consensus 99 ~~~~ 102 (178)
..+|
T Consensus 95 a~sg 98 (115)
T TIGR02508 95 AASG 98 (115)
T ss_pred HhCC
Confidence 6665
No 282
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=87.25 E-value=2.3 Score=21.94 Aligned_cols=30 Identities=0% Similarity=-0.140 Sum_probs=13.8
Q ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHH
Q 036068 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALI 114 (178)
Q Consensus 85 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 114 (178)
.|-.+++..+++.|.+.|+..+...+..++
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 334444444445554444444444444443
No 283
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=87.18 E-value=12 Score=28.94 Aligned_cols=141 Identities=15% Similarity=0.091 Sum_probs=74.9
Q ss_pred hcCChhHHHHHhccCCC-CChhH--HHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHH
Q 036068 18 NRGQVDIARQCFDQMPE-RDYVL--WTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWI 94 (178)
Q Consensus 18 ~~~~~~~a~~~~~~m~~-~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 94 (178)
-.|++++|.+-|+-|.. |.... ...|.-.--+.|+.+.|.+.-.+-.+.. +--.+.+...+...|..|+++.|.++
T Consensus 132 ~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 132 LEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred hcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHH
Confidence 36777777777777764 21111 1122222234566666655544443332 11246677888888888888888888
Q ss_pred HHHHHHhC-cccchHHHHHHHHHHHhcCC-----hhhhc----------cchhhHHH-HHHHHHhcCChhHHHHHHHHHH
Q 036068 95 KTYIDKNK-VKNDIFAGNALIDMYCICAD-----VEKAQ----------KDKFSWTT-MIVGLAISGNGDKALDMFSQML 157 (178)
Q Consensus 95 ~~~m~~~~-~~~~~~~~~~ll~~~~~~~~-----~~~a~----------~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~ 157 (178)
++.-.+.. ++++..--.-.+-.-.+... ...|. ||...--. -...+.+.|+..++-.+++.+=
T Consensus 211 vd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aW 290 (531)
T COG3898 211 VDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAW 290 (531)
T ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHH
Confidence 87655433 34443322222221222111 11111 44333222 2367778888888888888776
Q ss_pred Hc
Q 036068 158 RA 159 (178)
Q Consensus 158 ~~ 159 (178)
+.
T Consensus 291 K~ 292 (531)
T COG3898 291 KA 292 (531)
T ss_pred hc
Confidence 65
No 284
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=86.99 E-value=0.92 Score=29.08 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=22.2
Q ss_pred cCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068 50 VNRFREALTLFQEMQTSNIMGDEFTIVSILTAR 82 (178)
Q Consensus 50 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 82 (178)
.|.-..|-.+|.+|+++|-+|| .|+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 3566778888888888888887 455666543
No 285
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.85 E-value=11 Score=28.06 Aligned_cols=146 Identities=13% Similarity=0.169 Sum_probs=82.6
Q ss_pred HHHHHHhcCChhHHHHHhccCCC--CChhHHHHHHHHHhhcCChhHHHHHHHHhHhC--------CCCCcHHHHHHHHHH
Q 036068 12 IVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFQEMQTS--------NIMGDEFTIVSILTA 81 (178)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------~~~~~~~~~~~ll~~ 81 (178)
..++.-+.|+|+...+....... ++...|..+... ..++.+++....++.... ........|..++..
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~l 81 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNEDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKL 81 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCCChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 35677788999998888887775 344555555544 778888888877776442 111122233333222
Q ss_pred hccccchhhHHHHH--------------HHHHH--hCcccchHHHHHHHHHHHhcCC-hhhhccchhhHHHHHHHHHhcC
Q 036068 82 RANLRALDLGEWIK--------------TYIDK--NKVKNDIFAGNALIDMYCICAD-VEKAQKDKFSWTTMIVGLAISG 144 (178)
Q Consensus 82 ~~~~~~~~~a~~~~--------------~~m~~--~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~li~~~~~~~ 144 (178)
. ...+++++.++. +...+ ....++..+|..++..-.-.-. .........+|..+...+.+.|
T Consensus 82 q-~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g 160 (352)
T PF02259_consen 82 Q-QLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAG 160 (352)
T ss_pred h-HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCC
Confidence 1 112222222222 11111 1235566677766654322211 1111134567888888899999
Q ss_pred ChhHHHHHHHHHHHcC
Q 036068 145 NGDKALDMFSQMLRAS 160 (178)
Q Consensus 145 ~~~~a~~~~~~m~~~g 160 (178)
.++.|...+.++...+
T Consensus 161 ~~~~A~~~l~~~~~~~ 176 (352)
T PF02259_consen 161 NFQLALSALNRLFQLN 176 (352)
T ss_pred CcHHHHHHHHHHhccC
Confidence 9999999888887643
No 286
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.83 E-value=2.8 Score=30.97 Aligned_cols=99 Identities=12% Similarity=0.129 Sum_probs=62.2
Q ss_pred hhHHHHHhccCCC-------CChhHHHHHHHHHhhcCC----hhHHHHHHHHhHhCCCCCcH--HHHHHHHHHhccccc-
Q 036068 22 VDIARQCFDQMPE-------RDYVLWTAMIDGYLRVNR----FREALTLFQEMQTSNIMGDE--FTIVSILTARANLRA- 87 (178)
Q Consensus 22 ~~~a~~~~~~m~~-------~~~~~~~~li~~~~~~~~----~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~- 87 (178)
...|.++|+.|++ ++-.++..|+.. ..++ .+.+..+|+.+.+.|...+- .....++..+.....
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 4568999999985 366677777665 3333 46678888888887765442 333333333333322
Q ss_pred -hhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCCh
Q 036068 88 -LDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123 (178)
Q Consensus 88 -~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 123 (178)
..++.++++.+.+.|+++....|..+ ..++-.++.
T Consensus 197 ~v~r~~~l~~~l~~~~~kik~~~yp~l-GlLall~~~ 232 (297)
T PF13170_consen 197 KVARVIELYNALKKNGVKIKYMHYPTL-GLLALLEDP 232 (297)
T ss_pred HHHHHHHHHHHHHHcCCccccccccHH-HHHHhcCCc
Confidence 34788899999999998877665544 333333333
No 287
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.49 E-value=12 Score=28.11 Aligned_cols=90 Identities=11% Similarity=0.061 Sum_probs=51.9
Q ss_pred ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC---CCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHH
Q 036068 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTS---NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNA 112 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 112 (178)
...+...++..-....+++.+...+=++... ...|+ .+..++++.|.+. +++++..++..=++.|+-||.++++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~-~~~~~~irlllky-~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRN-WTIHTWIRLLLKY-DPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcc-ccHHHHHHHHHcc-ChHHHHHHHhCcchhccccchhhHHH
Confidence 4444555555555556666666665555432 11222 2223344444332 55566666666667777777777777
Q ss_pred HHHHHHhcCChhhhc
Q 036068 113 LIDMYCICADVEKAQ 127 (178)
Q Consensus 113 ll~~~~~~~~~~~a~ 127 (178)
+|+.+.+.+++.+|.
T Consensus 141 l~D~flk~~n~~~aa 155 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAA 155 (418)
T ss_pred HHHHHHhcccHHHHH
Confidence 777777777777663
No 288
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=86.39 E-value=17 Score=30.39 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=10.7
Q ss_pred chHHHHHHHHHHHhcCChhhh
Q 036068 106 DIFAGNALIDMYCICADVEKA 126 (178)
Q Consensus 106 ~~~~~~~ll~~~~~~~~~~~a 126 (178)
+......+-+.+.+.|.-++|
T Consensus 851 ~s~llp~~a~mf~svGMC~qA 871 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQA 871 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHH
Confidence 444445555555555555544
No 289
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.32 E-value=17 Score=29.79 Aligned_cols=92 Identities=16% Similarity=0.157 Sum_probs=56.8
Q ss_pred hcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-
Q 036068 49 RVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ- 127 (178)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~- 127 (178)
+.|+.+.|.++..+. -+..-|..|-++..+.+++..|.+.+..... |..|+-.+...|+.+...
T Consensus 649 ~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 445566665554442 2456788888888888888888888765443 334444555555544222
Q ss_pred -----cchhhHHHHHHHHHhcCChhHHHHHHHH
Q 036068 128 -----KDKFSWTTMIVGLAISGNGDKALDMFSQ 155 (178)
Q Consensus 128 -----~~~~~~~~li~~~~~~~~~~~a~~~~~~ 155 (178)
...-..|..+-+|...|+++++++++.+
T Consensus 714 la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 714 LASLAKKQGKNNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHhhcccchHHHHHHHcCCHHHHHHHHHh
Confidence 2223345566677778888888877654
No 290
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.05 E-value=2.9 Score=29.44 Aligned_cols=81 Identities=10% Similarity=-0.081 Sum_probs=59.0
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhC--cccchHHHHHHHHH
Q 036068 39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK--VKNDIFAGNALIDM 116 (178)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~ 116 (178)
|.+.-++.+.+.+..++++...++-.+.+ +-|..+-..+++.+|-.|++++|..=++...... ..+...+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34556677888889999998888766654 3456666778999999999999987777665443 34556778888876
Q ss_pred HHhc
Q 036068 117 YCIC 120 (178)
Q Consensus 117 ~~~~ 120 (178)
-...
T Consensus 82 ea~R 85 (273)
T COG4455 82 EAAR 85 (273)
T ss_pred HHHH
Confidence 4443
No 291
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=86.04 E-value=14 Score=28.40 Aligned_cols=81 Identities=9% Similarity=0.013 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHhHhCC---CCCcHHHHHHHHHHhcc---ccchhhHHHHHHHHHHhCcccchHHHHH
Q 036068 39 LWTAMIDGYLRVNRFREALTLFQEMQTSN---IMGDEFTIVSILTARAN---LRALDLGEWIKTYIDKNKVKNDIFAGNA 112 (178)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 112 (178)
+...++-+|....+++...++.+.+...- +.-....---...++.+ .|+-++|.+++..+......+++.++..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33355557899999999999999987751 11122222344556666 8999999999998666666778888887
Q ss_pred HHHHHHh
Q 036068 113 LIDMYCI 119 (178)
Q Consensus 113 ll~~~~~ 119 (178)
+-..|-.
T Consensus 223 ~GRIyKD 229 (374)
T PF13281_consen 223 LGRIYKD 229 (374)
T ss_pred HHHHHHH
Confidence 7776654
No 292
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=85.45 E-value=2.8 Score=25.87 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=26.3
Q ss_pred chhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 129 DKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 129 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
...-|..|+.-|...|.+++|++++.++.+
T Consensus 38 ~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 38 EHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 344577899999999999999999999987
No 293
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.11 E-value=8.4 Score=25.85 Aligned_cols=65 Identities=15% Similarity=0.052 Sum_probs=51.1
Q ss_pred HHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc------------------------------------cchh-hHH
Q 036068 92 EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ------------------------------------KDKF-SWT 134 (178)
Q Consensus 92 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~------------------------------------~~~~-~~~ 134 (178)
.++++.+.+.++.|....+..+++.+.+.|++.... .-.. .+.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~~ 93 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGTAYE 93 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhhhHH
Confidence 456677778899999999999999999999988765 1223 566
Q ss_pred HHHHHHHhcCChhHHHHHHHHH
Q 036068 135 TMIVGLAISGNGDKALDMFSQM 156 (178)
Q Consensus 135 ~li~~~~~~~~~~~a~~~~~~m 156 (178)
.++..+...|++-+|+++.++.
T Consensus 94 ~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 94 EIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HHHHHHHhCCCHHHHHHHHHHc
Confidence 7777788888888888888774
No 294
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=84.49 E-value=3.1 Score=22.74 Aligned_cols=46 Identities=11% Similarity=0.117 Sum_probs=28.3
Q ss_pred hhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHH
Q 036068 53 FREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK 100 (178)
Q Consensus 53 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 100 (178)
++...++++.+... +.|-.--..+|.++...|++++|.++++.+.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34445555555433 34555666777778888888888777776654
No 295
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=84.43 E-value=7.2 Score=23.86 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=11.6
Q ss_pred HHHHHHhhcCChhHHHHHHHHh
Q 036068 42 AMIDGYLRVNRFREALTLFQEM 63 (178)
Q Consensus 42 ~li~~~~~~~~~~~a~~~~~~m 63 (178)
.++..|...|+.++|...++++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3444555556666666655554
No 296
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=84.01 E-value=18 Score=29.97 Aligned_cols=75 Identities=13% Similarity=0.027 Sum_probs=51.0
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc------c--chhhHHHHHHHHHhcC
Q 036068 73 FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ------K--DKFSWTTMIVGLAISG 144 (178)
Q Consensus 73 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~------~--~~~~~~~li~~~~~~~ 144 (178)
.+...+..-+.+...+..|-++|..|-+ ...+++.+...+++.+|. | -...|-.-.+-++..+
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEND 818 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhh
Confidence 3444444455666667777777766543 235677888889999887 1 1223445567778899
Q ss_pred ChhHHHHHHHHH
Q 036068 145 NGDKALDMFSQM 156 (178)
Q Consensus 145 ~~~~a~~~~~~m 156 (178)
+|++|.+.|.+.
T Consensus 819 rFeEAqkAfhkA 830 (1081)
T KOG1538|consen 819 RFEEAQKAFHKA 830 (1081)
T ss_pred hHHHHHHHHHHh
Confidence 999999999775
No 297
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=83.44 E-value=14 Score=29.39 Aligned_cols=80 Identities=15% Similarity=0.123 Sum_probs=54.0
Q ss_pred HHHHHhhcCChhHHHHHHHHhHhCC-CCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHhc
Q 036068 43 MIDGYLRVNRFREALTLFQEMQTSN-IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV-KNDIFAGNALIDMYCIC 120 (178)
Q Consensus 43 li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~ 120 (178)
|-...-+.|+.++|.+.|++|.+.. ..-.......|+.++...+.+.++..++..-.+... +.-...|+..+-.+-..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence 4445557799999999999987653 222344677889999999999999998877654432 23345577666544444
Q ss_pred CC
Q 036068 121 AD 122 (178)
Q Consensus 121 ~~ 122 (178)
++
T Consensus 345 ~d 346 (539)
T PF04184_consen 345 GD 346 (539)
T ss_pred cc
Confidence 43
No 298
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.41 E-value=28 Score=29.93 Aligned_cols=170 Identities=14% Similarity=0.098 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCCCC-------hhHHHHHHHHHhhcCCh--hHHHHHHHHhHhCCCCCcHHHHHH-
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPERD-------YVLWTAMIDGYLRVNRF--REALTLFQEMQTSNIMGDEFTIVS- 77 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~-------~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~- 77 (178)
-|..|+..|...|+.++|+++|.+..+.+ ..-+.-+++.+-+.+.. +..++.-+=..+..-.-....++.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 47889999999999999999999886522 11222344444444443 333332222222211101111111
Q ss_pred -----------HHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCC----h----hhhc-----------
Q 036068 78 -----------ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD----V----EKAQ----------- 127 (178)
Q Consensus 78 -----------ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~----~----~~a~----------- 127 (178)
-+-.|......+-+..+++.+....-.++....+.++..|++.=+ . +++.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 122344555667788888888877667778888888888876433 0 0110
Q ss_pred ----------------cchhhHHHHHHHHHhcCChhHHHHHHHHHHH------------c-CCCCChhHHHHHHhhhhc
Q 036068 128 ----------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR------------A-SIKPDEVAYVGVLSACTH 177 (178)
Q Consensus 128 ----------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~------------~-g~~p~~~t~~~li~a~~~ 177 (178)
+...-|.-.-.-+.+.|+.++|+.++-..+. . .-.++...|.++++.|.+
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~ 744 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLN 744 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhc
Confidence 1222222222223388899999987766543 1 234577888888887754
No 299
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=83.38 E-value=2.7 Score=22.97 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=20.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 134 TTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 134 ~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
-.+|.++...|++++|.++++++.+
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3578999999999999999998875
No 300
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=83.30 E-value=3.3 Score=30.48 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHH
Q 036068 37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVS 77 (178)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 77 (178)
..-|+.-|..-.+.||+++|+.++++-++.|+.--..+|-.
T Consensus 257 e~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 257 ESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 33477888888888888888888888888887644445433
No 301
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=83.28 E-value=11 Score=25.22 Aligned_cols=66 Identities=8% Similarity=-0.084 Sum_probs=49.9
Q ss_pred HHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 61 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
+.+++.|++++..= ..++..+....+.-.|.++++.+.+.+...+..|..--|..+...|-+....
T Consensus 15 ~~L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~~ 80 (169)
T PRK11639 15 KLCAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKVE 80 (169)
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEEe
Confidence 33556787766544 3556666556667789999999999998888888888888899888887764
No 302
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=82.31 E-value=9 Score=23.42 Aligned_cols=62 Identities=15% Similarity=0.259 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCChhHHHHHhccCCCCC--hhHHHHHHHHHhhc--CChhHHHHHHHHhHhCCCCCc
Q 036068 10 TAIVSRYINRGQVDIARQCFDQMPERD--YVLWTAMIDGYLRV--NRFREALTLFQEMQTSNIMGD 71 (178)
Q Consensus 10 ~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~~~ 71 (178)
..+|..|...|+.++|..-++++..|+ ......++...... ..-+.+..++.++...+..+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~ 71 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPSQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISK 71 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GGGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-H
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCH
Confidence 456778888999999999999987761 11222333333332 223445666677776665443
No 303
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=81.91 E-value=18 Score=26.59 Aligned_cols=83 Identities=7% Similarity=-0.078 Sum_probs=52.8
Q ss_pred HHHHHhcCChhHHHH----HhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh-----c
Q 036068 13 VSRYINRGQVDIARQ----CFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR-----A 83 (178)
Q Consensus 13 i~~~~~~~~~~~a~~----~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-----~ 83 (178)
|.+++..++|.++.. .|+.-++--.......|-.|.|.++...+.++-..=+..--.-+...|.++...| .
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 778888888888654 3444444456667777888888888877776665544321111223355555444 5
Q ss_pred cccchhhHHHHH
Q 036068 84 NLRALDLGEWIK 95 (178)
Q Consensus 84 ~~~~~~~a~~~~ 95 (178)
=.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 568888888876
No 304
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=81.67 E-value=9.9 Score=23.43 Aligned_cols=55 Identities=16% Similarity=0.270 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCChhHHHHHhccCCC----------CChhHHHHHHHHHhhcCChhHHHHHHHHhHh
Q 036068 10 TAIVSRYINRGQVDIARQCFDQMPE----------RDYVLWTAMIDGYLRVNRFREALTLFQEMQT 65 (178)
Q Consensus 10 ~~li~~~~~~~~~~~a~~~~~~m~~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 65 (178)
++|+.+|... +...+..+++.=.. ....-|..|+..|...|..++|.++|.++..
T Consensus 3 TaLlk~Yl~~-~~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 3 TALLKCYLET-NPSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHh-CHHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4566666666 55555555543211 1233466777777777777777777776655
No 305
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.12 E-value=5.9 Score=22.94 Aligned_cols=46 Identities=9% Similarity=0.000 Sum_probs=30.4
Q ss_pred hcCChhHHHHHHHHhHhCCCCCcH--HHHHHHHHHhccccchhhHHHH
Q 036068 49 RVNRFREALTLFQEMQTSNIMGDE--FTIVSILTARANLRALDLGEWI 94 (178)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~ 94 (178)
..++.++|+..|...++.-..|.. .++..++++++.-|+++++...
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678888888887665332221 4666778888888887776554
No 306
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=81.02 E-value=27 Score=27.95 Aligned_cols=51 Identities=12% Similarity=0.017 Sum_probs=41.8
Q ss_pred HHHHHhccccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHhcCChhhhc
Q 036068 77 SILTARANLRALDLGEWIKTYIDKNKVK-NDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 77 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
-+..++.+.|+.++|.+.+.+|.+.... ....+...|+..+...+.+.+++
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q 315 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQ 315 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHH
Confidence 4566777899999999999999875433 34668889999999999999987
No 307
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=80.98 E-value=28 Score=28.12 Aligned_cols=146 Identities=7% Similarity=0.004 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCC--CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccc
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL 85 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 85 (178)
..-+++..|+++-+++.+..+-.+|.. .+-..|-.++..|..+ ..++-..+|+++.+..+. |+..-..+..-|-+
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yEk- 144 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYEK- 144 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHHH-
Confidence 355677888888888888888877763 5777888888888888 457888888888776543 33333344444433
Q ss_pred cchhhHHHHHHHHHHhCcc-----cchHHHHHHHHHHHhcCChhhhc-------------cchhhHHHHHHHHHhcCChh
Q 036068 86 RALDLGEWIKTYIDKNKVK-----NDIFAGNALIDMYCICADVEKAQ-------------KDKFSWTTMIVGLAISGNGD 147 (178)
Q Consensus 86 ~~~~~a~~~~~~m~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~-------------~~~~~~~~li~~~~~~~~~~ 147 (178)
.+.+.+..+|.....+-++ .--.+|.-+...-.. +.+... .-.+.+.-+-..|....++.
T Consensus 145 ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~d--D~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~ 222 (711)
T COG1747 145 IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGD--DKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWT 222 (711)
T ss_pred hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccc--cHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHH
Confidence 5556666666554433222 112344444431111 111100 24555666677788888899
Q ss_pred HHHHHHHHHHH
Q 036068 148 KALDMFSQMLR 158 (178)
Q Consensus 148 ~a~~~~~~m~~ 158 (178)
+|+++++.+++
T Consensus 223 eai~Ilk~il~ 233 (711)
T COG1747 223 EAIRILKHILE 233 (711)
T ss_pred HHHHHHHHHhh
Confidence 99988886554
No 308
>PRK13342 recombination factor protein RarA; Reviewed
Probab=80.84 E-value=24 Score=27.38 Aligned_cols=115 Identities=14% Similarity=0.026 Sum_probs=66.6
Q ss_pred hhHHHHHHHHhHhC---CC-CCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhcc
Q 036068 53 FREALTLFQEMQTS---NI-MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128 (178)
Q Consensus 53 ~~~a~~~~~~m~~~---~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 128 (178)
.++...++++.... |+ ..+......++..+ .|+...+..+++.....+...+......++..... .++ .
T Consensus 153 ~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~--~~d---~ 225 (413)
T PRK13342 153 EEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRAA--RYD---K 225 (413)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhh--ccC---C
Confidence 45666666665432 43 45555555565543 68888888888876654333444444444432111 111 1
Q ss_pred chhhHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCChhHHHHHHhh
Q 036068 129 DKFSWTTMIVGLAI---SGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174 (178)
Q Consensus 129 ~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a 174 (178)
+.....-++.++.+ .++.+.|+..+.+|.+.|..|....=..++.+
T Consensus 226 ~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 226 DGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred CccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 11223344444444 58999999999999999988886554444433
No 309
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=80.80 E-value=26 Score=27.77 Aligned_cols=161 Identities=13% Similarity=0.066 Sum_probs=72.0
Q ss_pred HHHHhcCChhHHHHHhccCCC-----C--ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh-ccc
Q 036068 14 SRYINRGQVDIARQCFDQMPE-----R--DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR-ANL 85 (178)
Q Consensus 14 ~~~~~~~~~~~a~~~~~~m~~-----~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~ 85 (178)
+.+...|++++|.+.|++... + ....+--+.-.+.-..+|++|.+.|.++.+.. .-+..+|.-+.-+| ...
T Consensus 275 R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l 353 (468)
T PF10300_consen 275 RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLML 353 (468)
T ss_pred HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhh
Confidence 344456677777777775332 0 11122233444555567777777777776643 22333443333332 344
Q ss_pred cch-------hhHHHHHHHHHH-------hCcccchHHHHHHHHHHHhcCC--hhhhccchhhHH--HHHHHHHhcCChh
Q 036068 86 RAL-------DLGEWIKTYIDK-------NKVKNDIFAGNALIDMYCICAD--VEKAQKDKFSWT--TMIVGLAISGNGD 147 (178)
Q Consensus 86 ~~~-------~~a~~~~~~m~~-------~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~--~li~~~~~~~~~~ 147 (178)
++. ++|.+++..... +..+.+..+..- +.-|.+.+. ..++..-...+. .+-.++.+.++-.
T Consensus 354 ~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK-~~~~~~~~~~~~~d~~~~~p~~El~y~WNg~~~~~~~~ 432 (468)
T PF10300_consen 354 GREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRK-AQKYEKQAKVDLVDAILVLPALELMYFWNGFPRMPKEE 432 (468)
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHH-HHHHHhcCCCcchhhhhcCHHHHHHHHHhccccCChHH
Confidence 444 556666654432 111112222111 223333321 111211111111 1223444444444
Q ss_pred HHHHHHHHHHHc---CCCCChhHHHHHHhhhh
Q 036068 148 KALDMFSQMLRA---SIKPDEVAYVGVLSACT 176 (178)
Q Consensus 148 ~a~~~~~~m~~~---g~~p~~~t~~~li~a~~ 176 (178)
.-...+.+..+. ...+|......||.|.+
T Consensus 433 l~~~~~~~l~~~~~~~~~~De~~l~~lL~g~~ 464 (468)
T PF10300_consen 433 LEIKSLLELEESKNSEEDPDERALRHLLKGAC 464 (468)
T ss_pred HHHHHHHHHHhcccccCCccHHHHHHHHHHHH
Confidence 332344444332 35678888888888754
No 310
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=80.77 E-value=20 Score=26.37 Aligned_cols=118 Identities=9% Similarity=0.073 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCC---------CCChh--------HHHHHHHHHhhcCChhHHHHHHHHhHhC--CC
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMP---------ERDYV--------LWTAMIDGYLRVNRFREALTLFQEMQTS--NI 68 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~---------~~~~~--------~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~ 68 (178)
....-.+-+.-+.|+..|.+.-++-- +.+.. ..-.=|.+++..++|.++....-+-... .+
T Consensus 37 lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEkl 116 (309)
T PF07163_consen 37 LLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKL 116 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccC
Confidence 34444455556677777666655421 11111 1122367888999999988766554432 34
Q ss_pred CCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHh-----cCChhhhc
Q 036068 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI-----CADVEKAQ 127 (178)
Q Consensus 69 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-----~~~~~~a~ 127 (178)
+|. +.-..|-.|.+.+++..+.++-+.-.+..-..+..-|..+...|.. .|.+++|.
T Consensus 117 Ppk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAe 178 (309)
T PF07163_consen 117 PPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAE 178 (309)
T ss_pred CHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHH
Confidence 444 4445566678888988888888766654434444557777776654 47777764
No 311
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.63 E-value=3.5 Score=17.53 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 131 FSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 131 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
..|..+...+...|++++|...+++.++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3567778888999999999999988775
No 312
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=79.24 E-value=6.6 Score=26.78 Aligned_cols=66 Identities=8% Similarity=-0.190 Sum_probs=44.2
Q ss_pred ChhHHHHHHHHHhhcCChhHHHH---HHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCc
Q 036068 36 DYVLWTAMIDGYLRVNRFREALT---LFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV 103 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~---~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 103 (178)
.-..+...+.......+.+.... ..++..+ ..|+..+|..++.++...|+.++|.+...++...-+
T Consensus 107 ~~~~~~~~l~~~~~~~~~~~l~~~~~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 107 LFDYYAALLLLARLPPDPEMLEAYIEWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33334444444445555444333 3333333 369999999999999999999999999999887653
No 313
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=79.19 E-value=13 Score=23.09 Aligned_cols=79 Identities=10% Similarity=0.132 Sum_probs=48.8
Q ss_pred chhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc--------cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 87 ALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 87 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
.-++|..|.+.+...+- -...+--+-+..+.+.|+++.|. ||...|-+|- -.+.|-.+++..-+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHh
Confidence 35677777777777654 22333344466677888888876 6777776654 3577888888888887776
Q ss_pred cCCCCChhHHH
Q 036068 159 ASIKPDEVAYV 169 (178)
Q Consensus 159 ~g~~p~~~t~~ 169 (178)
+| .|....|.
T Consensus 98 ~g-~~~~q~Fa 107 (116)
T PF09477_consen 98 SG-SPELQAFA 107 (116)
T ss_dssp -S-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 54 34444443
No 314
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.47 E-value=20 Score=26.60 Aligned_cols=41 Identities=15% Similarity=0.180 Sum_probs=24.1
Q ss_pred chhhHHHHHHHHHhcCChhHHHHHHHHHH-----HcCCCCChhHHH
Q 036068 129 DKFSWTTMIVGLAISGNGDKALDMFSQML-----RASIKPDEVAYV 169 (178)
Q Consensus 129 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~-----~~g~~p~~~t~~ 169 (178)
+...|-.|+..++..||-..|..=|+++. +.|+..|...+.
T Consensus 312 ~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 312 SEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred hhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 44556666666666676666655555553 237766665544
No 315
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=78.33 E-value=7.9 Score=23.84 Aligned_cols=50 Identities=12% Similarity=-0.013 Sum_probs=33.8
Q ss_pred HHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 78 ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 78 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
++..+...+..-.|.++++.+.+.+...+..|.--.++.+...|-.....
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~~ 55 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREIE 55 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEEE
Confidence 44555555555667777777777777677777777777777777766544
No 316
>PRK09462 fur ferric uptake regulator; Provisional
Probab=78.24 E-value=16 Score=23.79 Aligned_cols=66 Identities=6% Similarity=-0.051 Sum_probs=49.8
Q ss_pred HHhHhCCCCCcHHHHHHHHHHhccc-cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 61 QEMQTSNIMGDEFTIVSILTARANL-RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 61 ~~m~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
+.+.+.|++++..= ..++..+... +..-.|.++++.+.+.+...+..|.--.|..+...|-+....
T Consensus 6 ~~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~~~~ 72 (148)
T PRK09462 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHN 72 (148)
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 44567788766543 4556666554 467789999999999998888888888888999988886654
No 317
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=78.13 E-value=8.3 Score=22.79 Aligned_cols=62 Identities=10% Similarity=-0.077 Sum_probs=33.4
Q ss_pred HHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCCh
Q 036068 56 ALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123 (178)
Q Consensus 56 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 123 (178)
+.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. +|.. .|...++++-.+|+-
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~----aF~~Fl~aLreT~~~ 82 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEG----WFSKFLQALRETEHH 82 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCc----HHHHHHHHHHHcCch
Confidence 34556666666642 44444444333345566666666666666 4433 356666666655553
No 318
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=78.02 E-value=22 Score=25.30 Aligned_cols=151 Identities=12% Similarity=-0.004 Sum_probs=79.6
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCCCCh-hHHHHHHHHH--hhcCChhHHHHHHHHhHhCC-CCCcHHHHHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDY-VLWTAMIDGY--LRVNRFREALTLFQEMQTSN-IMGDEFTIVSIL 79 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~li~~~--~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll 79 (178)
.-+.+||-+--.+...|+++.|.+.|+..-+-|+ .-|..+=++. --.|+++.|.+=|.+..... -.|=..-|.-+.
T Consensus 97 ~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 97 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 3355688888888889999999999987765222 2233332221 13466777766555544432 122222232222
Q ss_pred HHhccccchhhHHHHH-HHHHHhCcccchHHHHHHHHHH--Hhc--------------CChhhhccchhhHHHHHHHHHh
Q 036068 80 TARANLRALDLGEWIK-TYIDKNKVKNDIFAGNALIDMY--CIC--------------ADVEKAQKDKFSWTTMIVGLAI 142 (178)
Q Consensus 80 ~~~~~~~~~~~a~~~~-~~m~~~~~~~~~~~~~~ll~~~--~~~--------------~~~~~a~~~~~~~~~li~~~~~ 142 (178)
. +.-++.+|..-+ ++..+ .|..-|...|-.| .+. ++-.-|..-..||--|-..+..
T Consensus 177 E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~ 249 (297)
T COG4785 177 E---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLS 249 (297)
T ss_pred H---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc
Confidence 2 222333333222 22111 1212222211111 110 2222222457788889999999
Q ss_pred cCChhHHHHHHHHHHHcCC
Q 036068 143 SGNGDKALDMFSQMLRASI 161 (178)
Q Consensus 143 ~~~~~~a~~~~~~m~~~g~ 161 (178)
.|+.++|..+|+-....+|
T Consensus 250 ~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 250 LGDLDEATALFKLAVANNV 268 (297)
T ss_pred cccHHHHHHHHHHHHHHhH
Confidence 9999999999988776543
No 319
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=77.65 E-value=24 Score=25.48 Aligned_cols=82 Identities=16% Similarity=0.219 Sum_probs=53.4
Q ss_pred hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc------------------------cchhhHHHHH
Q 036068 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ------------------------KDKFSWTTMI 137 (178)
Q Consensus 82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~------------------------~~~~~~~~li 137 (178)
|.+..+-+--.++.+.....++..+..-..+++ +...|++..|. |.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 445555444444555445555555555555554 34566666665 5666666777
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChh
Q 036068 138 VGLAISGNGDKALDMFSQMLRASIKPDEV 166 (178)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 166 (178)
..|. .+++++|.++++++-+.|+.|...
T Consensus 247 ~~~~-~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 247 QACL-KRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred HHHH-hccHHHHHHHHHHHHHcCCCHHHH
Confidence 6654 688999999999999999988653
No 320
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=77.17 E-value=6.6 Score=24.45 Aligned_cols=52 Identities=13% Similarity=0.035 Sum_probs=40.3
Q ss_pred HHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 76 VSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 76 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
..++..+.+.+..-.|.++++.+.+.+...+..|.---|+.+.+.|-.....
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~~~ 62 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRKIE 62 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEEEE
Confidence 4567777777778889999999999888888888888888888888777655
No 321
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.06 E-value=44 Score=28.28 Aligned_cols=53 Identities=15% Similarity=0.126 Sum_probs=35.9
Q ss_pred HHHHHhcCChhHHHHHhccCCCC-----ChhHHHHHHHHHhhcCChhHHHHHHHHhHh
Q 036068 13 VSRYINRGQVDIARQCFDQMPER-----DYVLWTAMIDGYLRVNRFREALTLFQEMQT 65 (178)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 65 (178)
|+-+.+.+.+++|+...+.-... -...+...|..+...|++++|-+..-+|..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g 420 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG 420 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc
Confidence 34456777888888887766542 334566777777777777777776666654
No 322
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.77 E-value=28 Score=25.88 Aligned_cols=49 Identities=6% Similarity=-0.117 Sum_probs=23.0
Q ss_pred HHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChh
Q 036068 75 IVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124 (178)
Q Consensus 75 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 124 (178)
++...+.|..+|.+.+|.++.+..++-. +.+...+-.++..+...|+--
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~i 330 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEI 330 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccch
Confidence 3334444555555555555555444433 233444444555555555433
No 323
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=76.65 E-value=30 Score=27.41 Aligned_cols=72 Identities=15% Similarity=0.202 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCChhHHHHHhccCCCC---ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccc
Q 036068 10 TAIVSRYINRGQVDIARQCFDQMPER---DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL 85 (178)
Q Consensus 10 ~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 85 (178)
..|+.-|...|++.+|...++++.-| -...+..++.+..+.|+-...+.++++.-..|+. |-+.+-++|.+.
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI----T~nQMtkGf~RV 587 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI----TTNQMTKGFERV 587 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce----eHHHhhhhhhhh
Confidence 34566666666666666666666554 3345666666666666655566666665555532 444555555443
No 324
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=76.41 E-value=7.7 Score=29.43 Aligned_cols=47 Identities=11% Similarity=0.184 Sum_probs=23.9
Q ss_pred HHhhcCChhHHHHHHHHhHhCCCCC-cHHHHHHHHHHhccccchhhHHHH
Q 036068 46 GYLRVNRFREALTLFQEMQTSNIMG-DEFTIVSILTARANLRALDLGEWI 94 (178)
Q Consensus 46 ~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~ 94 (178)
-|.+.|.+++|+++|..-.. +.| |.+++..-..+|.+...+..|+.=
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~D 153 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEED 153 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHh
Confidence 34555556666665554322 233 555555555555555555544443
No 325
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=75.50 E-value=13 Score=21.33 Aligned_cols=82 Identities=6% Similarity=-0.013 Sum_probs=44.4
Q ss_pred HHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHH---HHHHHHHHhccccchhh
Q 036068 14 SRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEF---TIVSILTARANLRALDL 90 (178)
Q Consensus 14 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~~~~~~ 90 (178)
...++.|+++-+..+++.-.+.+. -+..+...+..|+. ++++.+.+.|..++.. -.+.+..+ +..|+
T Consensus 2 ~~A~~~~~~~~~~~ll~~~~~~~~--~~~~l~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~--- 71 (89)
T PF12796_consen 2 HIAAQNGNLEILKFLLEKGADINL--GNTALHYAAENGNL----EIVKLLLENGADINSQDKNGNTALHYA-AENGN--- 71 (89)
T ss_dssp HHHHHTTTHHHHHHHHHTTSTTTS--SSBHHHHHHHTTTH----HHHHHHHHTTTCTT-BSTTSSBHHHHH-HHTTH---
T ss_pred HHHHHcCCHHHHHHHHHCcCCCCC--CCCHHHHHHHcCCH----HHHHHHHHhcccccccCCCCCCHHHHH-HHcCC---
Confidence 456778888888888884433333 22244445566664 3445555566555543 23334443 33444
Q ss_pred HHHHHHHHHHhCcccc
Q 036068 91 GEWIKTYIDKNKVKND 106 (178)
Q Consensus 91 a~~~~~~m~~~~~~~~ 106 (178)
.++++.+.+.|..++
T Consensus 72 -~~~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 72 -LEIVKLLLEHGADVN 86 (89)
T ss_dssp -HHHHHHHHHTTT-TT
T ss_pred -HHHHHHHHHcCCCCC
Confidence 456666777776664
No 326
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=75.20 E-value=6.6 Score=31.16 Aligned_cols=87 Identities=16% Similarity=0.116 Sum_probs=59.1
Q ss_pred HHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhH
Q 036068 15 RYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLG 91 (178)
Q Consensus 15 ~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 91 (178)
.+...|+++.+.+.+....+ .+..+-.++++...+.|++++|.+.-.-|+...++ +.....+..-..-..+-++++
T Consensus 332 i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 332 IFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHH
Confidence 34567788888777776654 46667778888888888888888887777777664 444444444444455667777
Q ss_pred HHHHHHHHHhC
Q 036068 92 EWIKTYIDKNK 102 (178)
Q Consensus 92 ~~~~~~m~~~~ 102 (178)
...|+++....
T Consensus 411 ~~~wk~~~~~~ 421 (831)
T PRK15180 411 YHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHhccC
Confidence 77777765544
No 327
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=75.03 E-value=27 Score=24.84 Aligned_cols=74 Identities=8% Similarity=-0.031 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC--CCCCcHHHHHHHHHH
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTS--NIMGDEFTIVSILTA 81 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~ 81 (178)
|.+.-++.+.+.+++++++...++=.+ | |...-..++..|+-.|+|++|..-++-.-.. .-.+-...|..+|++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 345567888999999999988875432 3 7777888999999999999998777665433 223445677776664
No 328
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=74.74 E-value=14 Score=22.46 Aligned_cols=30 Identities=3% Similarity=-0.055 Sum_probs=17.2
Q ss_pred cchhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 036068 128 KDKFSWTTMIVGLAISGNGDKALDMFSQML 157 (178)
Q Consensus 128 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 157 (178)
|++....+.+++|-+.+|+-.|.++++-.+
T Consensus 40 P~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 40 PEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred CCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344445555556666666666666666555
No 329
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=74.59 E-value=10 Score=25.84 Aligned_cols=53 Identities=11% Similarity=0.033 Sum_probs=34.0
Q ss_pred HHHHHHHhccccchhhHHHHHHHHHH-hCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 75 IVSILTARANLRALDLGEWIKTYIDK-NKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 75 ~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
+...+.......+.+......+...+ ....|++.++..++..+...|+.++|.
T Consensus 111 ~~~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~ 164 (193)
T PF11846_consen 111 YAALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEAR 164 (193)
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 33334443444454444444443332 234688999999999999999999986
No 330
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=74.09 E-value=46 Score=27.04 Aligned_cols=114 Identities=11% Similarity=0.083 Sum_probs=60.8
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCCCC-hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh-
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERD-YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR- 82 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~- 82 (178)
.+..+..|++.+ |.-+.++..++++++.. . ...+..++++....|-......+.+.+....+ ++...-..+..+.
T Consensus 309 ~~~~f~~lv~~l-R~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~-~~~ea~~~~~~~~~ 385 (574)
T smart00638 309 AAAKFLRLVRLL-RTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKI-TPLEAAQLLAVLPH 385 (574)
T ss_pred hHHHHHHHHHHH-HhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 444566666554 35566667777777665 4 67888999999999865444444444444444 3333223333332
Q ss_pred -ccccchhhHHHHHHHHHHhCcccch-------HHHHHHHHHHHhcC
Q 036068 83 -ANLRALDLGEWIKTYIDKNKVKNDI-------FAGNALIDMYCICA 121 (178)
Q Consensus 83 -~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~~ 121 (178)
.+.-..+-...+++.+......+.. ..+..++..+|...
T Consensus 386 ~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~ 432 (574)
T smart00638 386 TARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNT 432 (574)
T ss_pred hhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCC
Confidence 2333344444444444434444444 34445555455443
No 331
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=73.80 E-value=43 Score=26.59 Aligned_cols=118 Identities=11% Similarity=-0.005 Sum_probs=75.6
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHhHhCC-CCCcH-----HHHHHHHHHhcc----ccchhhHHHHHHHHHHhCcccchHH
Q 036068 40 WTAMIDGYLRVNRFREALTLFQEMQTSN-IMGDE-----FTIVSILTARAN----LRALDLGEWIKTYIDKNKVKNDIFA 109 (178)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~ 109 (178)
+..+++..+-.|+=+.+++.+.+-.+.+ +.-.. ..|..++..++. ....+.+.++++.+.++- |+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHH
Confidence 3345666666788888888888765533 32221 244555555543 345778999999998874 45555
Q ss_pred HHHHH-HHHHhcCChhhhc---------------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 110 GNALI-DMYCICADVEKAQ---------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 110 ~~~ll-~~~~~~~~~~~a~---------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
|...- ..+...|++++|. -....+--+.-.+.-.++|++|.+.|.++.+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 54443 3455678888887 11222223334466789999999999999985
No 332
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.70 E-value=42 Score=28.96 Aligned_cols=127 Identities=10% Similarity=0.059 Sum_probs=68.5
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHhHhCC--CCC-cHHHHHHHHHHhccccch--hhHHHHHHHHHHhCcccchHHHHHH
Q 036068 39 LWTAMIDGYLRVNRFREALTLFQEMQTSN--IMG-DEFTIVSILTARANLRAL--DLGEWIKTYIDKNKVKNDIFAGNAL 113 (178)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~-~~~~~~~ll~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~l 113 (178)
.|..|+..|...|+-++|+++|.+....- ..+ -..-+--++.-+.+.+.. +.++++-++..+....-...+++..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 47888899999999999999998876531 000 111222244444444443 5555555555554443333333330
Q ss_pred HHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhhh
Q 036068 114 IDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176 (178)
Q Consensus 114 l~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~ 176 (178)
-.. ..+... .--+-.|......+.+..+++.+....-.++....+.++.-|+
T Consensus 586 ~~~--~~~sis---------~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 586 DKQ--EAESIS---------RDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred Chh--hhccCC---------HHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 000 000000 1133455666677777777777776655666666666666554
No 333
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.92 E-value=60 Score=27.84 Aligned_cols=150 Identities=13% Similarity=0.081 Sum_probs=98.3
Q ss_pred HHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHH
Q 036068 13 VSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGE 92 (178)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 92 (178)
-+.+.+.|++++|..-|-+-...-.. ..+|.-|....++..--..++.+.+.|+. +...-+.|+.+|.+.++.++..
T Consensus 375 gd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ 451 (933)
T KOG2114|consen 375 GDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLT 451 (933)
T ss_pred HHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHH
Confidence 34567789999988877764432111 24566777777788888888899999875 5556688999999999998887
Q ss_pred HHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhcc----chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHH
Q 036068 93 WIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK----DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAY 168 (178)
Q Consensus 93 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 168 (178)
++.+...+.....| ....+..+-+.+-.++|.. -...-..+-..+-..+++++|++++..|.-....+...+|
T Consensus 452 efI~~~~~g~~~fd---~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille~~~ny~eAl~yi~slp~~e~l~~l~ky 528 (933)
T KOG2114|consen 452 EFISKCDKGEWFFD---VETALEILRKSNYLDEAELLATKFKKHEWVLDILLEDLHNYEEALRYISSLPISELLRTLNKY 528 (933)
T ss_pred HHHhcCCCcceeee---HHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 77655442111112 4456666667777777761 1112234445556788999999998877543333443333
No 334
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=72.68 E-value=12 Score=19.73 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=27.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHh
Q 036068 135 TMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173 (178)
Q Consensus 135 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 173 (178)
.+..++.+.|++++|.+..+.+++. .|+..-...|-.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHHHH
Confidence 4557889999999999999999975 788766655543
No 335
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.99 E-value=29 Score=23.79 Aligned_cols=129 Identities=13% Similarity=0.040 Sum_probs=82.2
Q ss_pred ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHH-HHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHH
Q 036068 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEF-TIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALI 114 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 114 (178)
....|..-+.. .+.+..++|+..|.++.+.|-..-.. .---.-....+.|+...|...|++.-+....|-+.--..-+
T Consensus 58 sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 44456555554 45667899999999998877542211 11112233568889999999999988765555433111112
Q ss_pred ---HHHHhcCChhhhc-------cchh-----hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 036068 115 ---DMYCICADVEKAQ-------KDKF-----SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165 (178)
Q Consensus 115 ---~~~~~~~~~~~a~-------~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 165 (178)
..+.-+|.+++.. -+.. .-..|--+-.+.|++.+|...|.++...--.|-.
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprn 202 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRN 202 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHH
Confidence 2345677777765 1222 2345666667899999999999999876445543
No 336
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=71.97 E-value=3.5 Score=26.55 Aligned_cols=32 Identities=25% Similarity=0.463 Sum_probs=25.0
Q ss_pred hcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhh
Q 036068 142 ISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175 (178)
Q Consensus 142 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~ 175 (178)
.-|.-..|..+|++|+++|-+||. ++.|+.++
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 346667789999999999999985 66666654
No 337
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=71.91 E-value=8.4 Score=29.22 Aligned_cols=76 Identities=5% Similarity=-0.183 Sum_probs=51.1
Q ss_pred HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhh----HHHHHHHHHhcCChhHHHHHHHHH
Q 036068 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFS----WTTMIVGLAISGNGDKALDMFSQM 156 (178)
Q Consensus 81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~----~~~li~~~~~~~~~~~a~~~~~~m 156 (178)
-|.+.|.+++|...|..-+... +.++.++..-..+|.+...+..|..|-.. =...+.+|.+.+.-.+++....+.
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 5678899999999998766543 22778888888899999998888733211 123456666665555555544444
Q ss_pred H
Q 036068 157 L 157 (178)
Q Consensus 157 ~ 157 (178)
.
T Consensus 185 K 185 (536)
T KOG4648|consen 185 K 185 (536)
T ss_pred H
Confidence 3
No 338
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=71.40 E-value=19 Score=21.35 Aligned_cols=63 Identities=13% Similarity=0.033 Sum_probs=43.4
Q ss_pred HHHHhccCCCCChhHHHHHHHHHh---hcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHH
Q 036068 25 ARQCFDQMPERDYVLWTAMIDGYL---RVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGE 92 (178)
Q Consensus 25 a~~~~~~m~~~~~~~~~~li~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 92 (178)
+.++++.+.++++.|..-.=..-+ +.|+.+.|.++++.+. +| |+ .|..+++++.+.|+-..|.
T Consensus 21 ~~~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~~--aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QK--EG--WFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--Cc--HHHHHHHHHHHcCchhhhh
Confidence 455666666666666654444444 6688999999999988 54 44 6677888888887765554
No 339
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=70.81 E-value=33 Score=23.90 Aligned_cols=76 Identities=13% Similarity=0.042 Sum_probs=53.0
Q ss_pred HHHhcCChhHHHHHhccCCC-C---ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC---CCCCcHHHHHHHHHHhccccc
Q 036068 15 RYINRGQVDIARQCFDQMPE-R---DYVLWTAMIDGYLRVNRFREALTLFQEMQTS---NIMGDEFTIVSILTARANLRA 87 (178)
Q Consensus 15 ~~~~~~~~~~a~~~~~~m~~-~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~~~ 87 (178)
-+.+.|+- .|.+.|-.+.. | ++...-.|-..|. ..+.+++..++-+..+. +-.+|+..+.+|.+.+-+.++
T Consensus 116 ~Wsr~~d~-~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGDQ-EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCcH-HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 35555664 45555655553 3 4444445555555 56889999999887653 336789999999999999999
Q ss_pred hhhHH
Q 036068 88 LDLGE 92 (178)
Q Consensus 88 ~~~a~ 92 (178)
++.|.
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 98874
No 340
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=70.80 E-value=21 Score=21.77 Aligned_cols=24 Identities=25% Similarity=0.553 Sum_probs=13.7
Q ss_pred HHHHHHhcCChhHHHHHhccCCCC
Q 036068 12 IVSRYINRGQVDIARQCFDQMPER 35 (178)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~ 35 (178)
++..|...+++++|.+-+.++..|
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L~~~ 31 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLELKLP 31 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHhCCC
Confidence 455555556666666666655544
No 341
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=70.59 E-value=32 Score=28.79 Aligned_cols=78 Identities=9% Similarity=0.045 Sum_probs=55.5
Q ss_pred HHHHHHhhcCChhHHHHHHHHhHhC--CCCCcHHHHHHHHHHhccccchhhHH---HHHHHHHHhCcccchHHHHHHHHH
Q 036068 42 AMIDGYLRVNRFREALTLFQEMQTS--NIMGDEFTIVSILTARANLRALDLGE---WIKTYIDKNKVKNDIFAGNALIDM 116 (178)
Q Consensus 42 ~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~---~~~~~m~~~~~~~~~~~~~~ll~~ 116 (178)
+|+++|..+|++..+.++++.+... |-..=...||..|+...+.|.++... ..-+.+++..+.-+..||..++..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 8999999999999999999998654 33334567888899999999875321 112334445566678888888765
Q ss_pred HHh
Q 036068 117 YCI 119 (178)
Q Consensus 117 ~~~ 119 (178)
-..
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 443
No 342
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=70.53 E-value=32 Score=24.58 Aligned_cols=50 Identities=12% Similarity=-0.096 Sum_probs=27.2
Q ss_pred HHHHHHhccccchhhHHHHHHHHHH----hC-cccchHHHHHHHHHHHhcCChhh
Q 036068 76 VSILTARANLRALDLGEWIKTYIDK----NK-VKNDIFAGNALIDMYCICADVEK 125 (178)
Q Consensus 76 ~~ll~~~~~~~~~~~a~~~~~~m~~----~~-~~~~~~~~~~ll~~~~~~~~~~~ 125 (178)
.-+..-|.+.|++++|.++++.+.. .| ..+...+...+..++.+.|+.++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~ 236 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVED 236 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHH
Confidence 3455556666666666666655532 22 23344555555566666666554
No 343
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.40 E-value=39 Score=24.57 Aligned_cols=24 Identities=13% Similarity=0.264 Sum_probs=15.8
Q ss_pred chhhHHHHHHHHHhcCChhHHHHHH
Q 036068 129 DKFSWTTMIVGLAISGNGDKALDMF 153 (178)
Q Consensus 129 ~~~~~~~li~~~~~~~~~~~a~~~~ 153 (178)
+..+...|+.+|- .|+.|++..++
T Consensus 227 d~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 227 DSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 6667777777775 56666665543
No 344
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=70.16 E-value=36 Score=27.52 Aligned_cols=114 Identities=13% Similarity=-0.034 Sum_probs=64.6
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHhHhCCC-CCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHH
Q 036068 39 LWTAMIDGYLRVNRFREALTLFQEMQTSNI-MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117 (178)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 117 (178)
....|+.-|.+.+++++|..++..|.-.-. .-.-.+.+.+.+.+.+..--++.+..++.....-..|...........|
T Consensus 410 ~~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey 489 (545)
T PF11768_consen 410 GLVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEY 489 (545)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHH
Confidence 344688899999999999999999865421 1123445556666666655555566666665544433322222222222
Q ss_pred HhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 036068 118 CICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS 160 (178)
Q Consensus 118 ~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 160 (178)
.. |=...-.-++..+.+.+++++|+.+--++-...
T Consensus 490 ~d--------~V~~~aRRfFhhLLR~~rfekAFlLAvdi~~~D 524 (545)
T PF11768_consen 490 RD--------PVSDLARRFFHHLLRYQRFEKAFLLAVDIGDRD 524 (545)
T ss_pred HH--------HHHHHHHHHHHHHHHhhHHHHHHHHHHhccchH
Confidence 21 001112345666677788888877666554433
No 345
>PF13934 ELYS: Nuclear pore complex assembly
Probab=69.75 E-value=37 Score=24.04 Aligned_cols=103 Identities=8% Similarity=0.018 Sum_probs=53.0
Q ss_pred HHHHHHHH--HhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcccc
Q 036068 9 WTAIVSRY--INRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLR 86 (178)
Q Consensus 9 ~~~li~~~--~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 86 (178)
|..+++++ ..++++++|.+.+-+-.-+ ...-.-++.++...|+.+.|..+++-..-....+ .....++.. ...+
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~ps~~-~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~--~~~~~~~~~-La~~ 154 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHPSLI-PWFPDKILQALLRRGDPKLALRYLRAVGPPLSSP--EALTLYFVA-LANG 154 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCCCCC-cccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCH--HHHHHHHHH-HHcC
Confidence 34445544 3456677777776444221 1112246777777788888887777654432222 222223333 4446
Q ss_pred chhhHHHHHHHHHHhCcccchHHHHHHHHHHH
Q 036068 87 ALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC 118 (178)
Q Consensus 87 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 118 (178)
.+.+|+.+-+...+.. ....+..++....
T Consensus 155 ~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 155 LVTEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred CHHHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 7777776654444321 1344555555444
No 346
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=69.43 E-value=23 Score=21.62 Aligned_cols=83 Identities=13% Similarity=0.111 Sum_probs=48.7
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcccc--chhhHHHHHHHHHHhCcccchHHHHHHHHHH
Q 036068 40 WTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLR--ALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117 (178)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 117 (178)
...++..|...+++++|.+.+.++..... -......++..+...+ .-+.+..++..+.+.+.......-..+-..+
T Consensus 5 i~~~l~ey~~~~D~~ea~~~l~~L~~~~~--~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~~~ 82 (113)
T smart00544 5 IFLIIEEYLSSGDTDEAVHCLLELKLPEQ--HHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANVISTKQFEKGFWRLL 82 (113)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCCcc--hHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHH
Confidence 34577788899999999999998865432 2234445566555443 3445666777777766543333333333333
Q ss_pred HhcCChh
Q 036068 118 CICADVE 124 (178)
Q Consensus 118 ~~~~~~~ 124 (178)
....+.+
T Consensus 83 ~~l~dl~ 89 (113)
T smart00544 83 EDIEDLE 89 (113)
T ss_pred hhChhhh
Confidence 3334333
No 347
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=69.25 E-value=26 Score=22.18 Aligned_cols=59 Identities=8% Similarity=-0.027 Sum_probs=39.8
Q ss_pred ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc-HHHHHHHHHHhccccchhhHHHHHHH
Q 036068 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD-EFTIVSILTARANLRALDLGEWIKTY 97 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 97 (178)
|..-....|.. ++. .+.+.++|+.|..+|+.-. +.-|......+.+.|++++|.++++.
T Consensus 65 D~RylkiWi~y-a~~--~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 65 DERYLKIWIKY-ADL--SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp -HHHHHHHHHH-HTT--BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHH--ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 55544444443 332 2388889999988776444 56777888888888999999988864
No 348
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.02 E-value=43 Score=24.17 Aligned_cols=146 Identities=14% Similarity=0.151 Sum_probs=70.6
Q ss_pred hcCChhHHHHHhccCCC-----C----ChhHHHHHHHHHhhcCChhHHHHHHHHhHh--CCCCCcH--HHHHHHHHHhcc
Q 036068 18 NRGQVDIARQCFDQMPE-----R----DYVLWTAMIDGYLRVNRFREALTLFQEMQT--SNIMGDE--FTIVSILTARAN 84 (178)
Q Consensus 18 ~~~~~~~a~~~~~~m~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~--~~~~~ll~~~~~ 84 (178)
-.+++++|-++|.+... + --..|--.-....+.|.-++|-..|-++-. +.+.|.. .....-|..|..
T Consensus 26 g~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~ 105 (288)
T KOG1586|consen 26 GSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTD 105 (288)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHh
Confidence 34567777777765432 1 112333334444444544444444444321 1112221 233344455555
Q ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhH-HHHH---HHHHhcCChhHHHHHHHHHHHcC
Q 036068 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSW-TTMI---VGLAISGNGDKALDMFSQMLRAS 160 (178)
Q Consensus 85 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~li---~~~~~~~~~~~a~~~~~~m~~~g 160 (178)
.|++..|-.....+-+. ++.+..-+...|..|-..+++=........- .+++ .--+..+++.+|..+|++.-...
T Consensus 106 ~Grf~~aAk~~~~iaEi-yEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 106 MGRFTMAAKHHIEIAEI-YESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred hhHHHHHHhhhhhHHHH-HhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555544444333322 2344455666666666655554433222111 2232 33345688899999999987764
Q ss_pred CCCC
Q 036068 161 IKPD 164 (178)
Q Consensus 161 ~~p~ 164 (178)
+.-+
T Consensus 185 ~~n~ 188 (288)
T KOG1586|consen 185 LDNN 188 (288)
T ss_pred ccch
Confidence 4333
No 349
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=67.67 E-value=19 Score=19.98 Aligned_cols=49 Identities=8% Similarity=-0.002 Sum_probs=25.1
Q ss_pred CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068 35 RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84 (178)
Q Consensus 35 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 84 (178)
++...++-++..+++-.-.++++..+.+...+|. .+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3444555555555555555666666666655553 244444444444443
No 350
>PRK09687 putative lyase; Provisional
Probab=67.05 E-value=48 Score=24.32 Aligned_cols=71 Identities=11% Similarity=0.006 Sum_probs=46.9
Q ss_pred ccchHHHHHHHHHHHhcCChhhhc------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhhhc
Q 036068 104 KNDIFAGNALIDMYCICADVEKAQ------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177 (178)
Q Consensus 104 ~~~~~~~~~ll~~~~~~~~~~~a~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~ 177 (178)
.++..+-...+.++++.|+..-.. .+....-..+.++...|+. +|+..+.++.+. .||...-...+.+|.+
T Consensus 203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGTVGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCchHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 445666666777777776633221 2333445677888888885 688888888864 4688888777777764
No 351
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=66.78 E-value=21 Score=20.92 Aligned_cols=33 Identities=9% Similarity=-0.097 Sum_probs=16.4
Q ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcC
Q 036068 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121 (178)
Q Consensus 85 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 121 (178)
..+.+++.++++.+..+|. ..|....+++-..|
T Consensus 43 ~tr~~q~~~LLd~L~~RG~----~AF~~F~~aL~~~~ 75 (84)
T cd08326 43 GSRRDQARQLLIDLETRGK----QAFPAFLSALRETG 75 (84)
T ss_pred CCHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhcC
Confidence 3445556666665555542 23444444444444
No 352
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=66.74 E-value=58 Score=25.39 Aligned_cols=94 Identities=12% Similarity=0.080 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCCC----------------ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC--C
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMPER----------------DYVLWTAMIDGYLRVNRFREALTLFQEMQTS--N 67 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~ 67 (178)
+.+=-.++.++....++.+.++..+....| .-.+.-.|++..+-.||+..|+++++.+.-. +
T Consensus 75 ~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~ 154 (404)
T PF10255_consen 75 VYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKG 154 (404)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccch
Confidence 333344677788888888877777775433 3334566888999999999999998876321 1
Q ss_pred ----CCC-cHHHHHHHHHHhccccchhhHHHHHHHHH
Q 036068 68 ----IMG-DEFTIVSILTARANLRALDLGEWIKTYID 99 (178)
Q Consensus 68 ----~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 99 (178)
+.+ .+.++--+-.+|...+++.+|.+.|....
T Consensus 155 l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 155 LYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred hhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 121 23455666777888889999999887654
No 353
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.74 E-value=65 Score=25.81 Aligned_cols=99 Identities=11% Similarity=0.007 Sum_probs=60.7
Q ss_pred HHHHHHh-HhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHH
Q 036068 57 LTLFQEM-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTT 135 (178)
Q Consensus 57 ~~~~~~m-~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 135 (178)
.+.+++. ...|+..+......+.. ...|++..|..++++....+- ...++..+...+ |- .+......
T Consensus 186 ~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~~--~~it~~~V~~~l---g~-----~~~~~~~~ 253 (484)
T PRK14956 186 QDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFTD--SKLTGVKIRKMI---GY-----HGIEFLTS 253 (484)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhCC--CCcCHHHHHHHh---CC-----CCHHHHHH
Confidence 3334443 33566666666555544 345888889999887664321 123344443333 11 24555667
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCChhH
Q 036068 136 MIVGLAISGNGDKALDMFSQMLRASIKPDEVA 167 (178)
Q Consensus 136 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t 167 (178)
++.+....+....|+.++++|.+.|..|....
T Consensus 254 l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~ 285 (484)
T PRK14956 254 FIKSLIDPDNHSKSLEILESLYQEGQDIYKFL 285 (484)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHH
Confidence 77777766677899999999999998876543
No 354
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=66.60 E-value=48 Score=24.16 Aligned_cols=149 Identities=11% Similarity=0.094 Sum_probs=84.1
Q ss_pred HhcCChhHHHHHhccCCC----CChhHHHHHHHHH-------hhcC-ChhHHHHHHHHhHhC--------CCCCc-----
Q 036068 17 INRGQVDIARQCFDQMPE----RDYVLWTAMIDGY-------LRVN-RFREALTLFQEMQTS--------NIMGD----- 71 (178)
Q Consensus 17 ~~~~~~~~a~~~~~~m~~----~~~~~~~~li~~~-------~~~~-~~~~a~~~~~~m~~~--------~~~~~----- 71 (178)
.+.|+++.|..++.+.+. .++.....|-..+ .+.+ +.+.|...+++-.+. ...|+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 468999999999998764 2444444443333 2346 888998888875432 22233
Q ss_pred HHHHHHHHHHhccccchh---hHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------c-chhhHHHHH
Q 036068 72 EFTIVSILTARANLRALD---LGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------K-DKFSWTTMI 137 (178)
Q Consensus 72 ~~~~~~ll~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~-~~~~~~~li 137 (178)
..++..++.++...+..+ +|..+++.+.+.... .+.++-.-+..+.+.++.+.+. + ....+...+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 356777788888777655 455566666544332 3555555566666644444332 1 334455544
Q ss_pred HHHH--hcCChhHHHHHHHHHHHcCCCCChh
Q 036068 138 VGLA--ISGNGDKALDMFSQMLRASIKPDEV 166 (178)
Q Consensus 138 ~~~~--~~~~~~~a~~~~~~m~~~g~~p~~~ 166 (178)
..+- .......|...+++++...+.|...
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCChh
Confidence 4442 1233445556666666555555543
No 355
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=66.44 E-value=50 Score=24.33 Aligned_cols=87 Identities=11% Similarity=-0.041 Sum_probs=44.7
Q ss_pred ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHH-----hCcccchHHH
Q 036068 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK-----NKVKNDIFAG 110 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~ 110 (178)
.+..-..-+..+...|++..|+++..+..+.- . ...-|+.+=..- .++++.......+.+ .-..-|+..|
T Consensus 126 ~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~L~---~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y 200 (291)
T PF10475_consen 126 TVQQTQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRHLS---SQLQETLELIEEQLDSDLSKVCQDFDPDKY 200 (291)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 44444556666777788888888877765421 0 000111000000 112222222222221 1125677888
Q ss_pred HHHHHHHHhcCChhhhc
Q 036068 111 NALIDMYCICADVEKAQ 127 (178)
Q Consensus 111 ~~ll~~~~~~~~~~~a~ 127 (178)
..++.+|.-.|+...+.
T Consensus 201 ~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 201 SKVQEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHHHHhhhHHHH
Confidence 88888888888776655
No 356
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=66.17 E-value=17 Score=23.64 Aligned_cols=39 Identities=8% Similarity=0.115 Sum_probs=32.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhh
Q 036068 136 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174 (178)
Q Consensus 136 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a 174 (178)
++..+.+.|-..++..++++|.+.|+..+...|+-+++-
T Consensus 115 vL~~ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~ 153 (157)
T COG2405 115 VLALAKSKGLISKDKPILDELIEKGFRISRSILEEILRK 153 (157)
T ss_pred HHHHHHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 344455678888999999999999999999999887753
No 357
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=66.01 E-value=83 Score=26.73 Aligned_cols=113 Identities=11% Similarity=0.017 Sum_probs=63.3
Q ss_pred hHHHHHHHHhHh--------CCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCc--c-----cchHHHHHHHH---
Q 036068 54 REALTLFQEMQT--------SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV--K-----NDIFAGNALID--- 115 (178)
Q Consensus 54 ~~a~~~~~~m~~--------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~-----~~~~~~~~ll~--- 115 (178)
++...++++... .++..+......++... .|+..++..+++.+..... . .+.......+.
T Consensus 171 edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~~ 248 (725)
T PRK13341 171 EDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQRA 248 (725)
T ss_pred HHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHHHhh
Confidence 445555655543 34555666666666644 7888888888887654211 1 11111111111
Q ss_pred -HHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhh
Q 036068 116 -MYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174 (178)
Q Consensus 116 -~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a 174 (178)
.|-+.|+ .....-..++.. ++.++++.|+.++.+|++.|..|....=..++-+
T Consensus 249 ~~ydk~gd-----~hyd~Isa~~ks-irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~a 302 (725)
T PRK13341 249 VLYDKEGD-----AHFDTISAFIKS-LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAA 302 (725)
T ss_pred hhcccCCC-----CCHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1222222 112222333333 4568999999999999999988876555544443
No 358
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=65.80 E-value=35 Score=22.40 Aligned_cols=58 Identities=10% Similarity=0.071 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCC-----CCChhHHHHHHHHHhhcCChhHHHHHHHHhHh
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMP-----ERDYVLWTAMIDGYLRVNRFREALTLFQEMQT 65 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 65 (178)
.+......+...+++..+...+.... ......+......+...+..+.+.+.+.....
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALA 123 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 33444444445555554444444332 12333333333444444444444444444443
No 359
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=65.26 E-value=56 Score=27.47 Aligned_cols=90 Identities=14% Similarity=0.155 Sum_probs=64.0
Q ss_pred HHHHHHHhcCChhHHHHHhccCCC------CChhHHHHHHHHHhhcCChhH--HHHHHHHhH-hCCCCCcHHHHHHHHHH
Q 036068 11 AIVSRYINRGQVDIARQCFDQMPE------RDYVLWTAMIDGYLRVNRFRE--ALTLFQEMQ-TSNIMGDEFTIVSILTA 81 (178)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~------~~~~~~~~li~~~~~~~~~~~--a~~~~~~m~-~~~~~~~~~~~~~ll~~ 81 (178)
+|+++|...|++-.+.++++.+.. .-...||.-|+.+.+.|.++- ..+-..+.+ ..-+.-|..||..++++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 799999999999999999987753 256678899999999997543 333233322 22345578899888888
Q ss_pred hccccchhhHHHHHHHHHH
Q 036068 82 RANLRALDLGEWIKTYIDK 100 (178)
Q Consensus 82 ~~~~~~~~~a~~~~~~m~~ 100 (178)
-...-.-....-++..++.
T Consensus 113 sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 113 SLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred hcChHhHHhccHHHHHHHH
Confidence 7775555556666666655
No 360
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.91 E-value=66 Score=27.70 Aligned_cols=47 Identities=9% Similarity=0.051 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCChhhhc---cchhhHHHHHHHHHhcCChhHHHHHHHHH
Q 036068 110 GNALIDMYCICADVEKAQ---KDKFSWTTMIVGLAISGNGDKALDMFSQM 156 (178)
Q Consensus 110 ~~~ll~~~~~~~~~~~a~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m 156 (178)
..+........|+.+... .-...|..++.-+++++.+++|++++..-
T Consensus 507 retv~~l~~~~~~~e~ll~fA~l~~d~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 507 RETVYQLLASHGRQEELLQFANLIKDYEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444445555555554 23445778889999999999999887653
No 361
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=64.70 E-value=35 Score=23.64 Aligned_cols=94 Identities=12% Similarity=0.227 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCC------CChhHHHHHHH-HHhhcCC--hhHHHHHHHHhHhCCCCCcHH---
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMPE------RDYVLWTAMID-GYLRVNR--FREALTLFQEMQTSNIMGDEF--- 73 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~------~~~~~~~~li~-~~~~~~~--~~~a~~~~~~m~~~~~~~~~~--- 73 (178)
+.-++...-.....|++++|..-++++.+ .-...|..+.. +++..+. +-+|..++.-+...+ .|+..
T Consensus 29 i~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~-~ps~~EL~ 107 (204)
T COG2178 29 IVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGR-LPSPEELG 107 (204)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCC-CCCHHHcC
Confidence 34455566666778888888888887764 24455666665 5665553 455665555544332 23321
Q ss_pred -HHHHHHHHh--------------ccccchhhHHHHHHHHHH
Q 036068 74 -TIVSILTAR--------------ANLRALDLGEWIKTYIDK 100 (178)
Q Consensus 74 -~~~~ll~~~--------------~~~~~~~~a~~~~~~m~~ 100 (178)
.+-..|.+. .+.|+++.|++.++.|.+
T Consensus 108 V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 108 VPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 111122222 344677777777777754
No 362
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=64.02 E-value=25 Score=21.57 Aligned_cols=48 Identities=10% Similarity=0.098 Sum_probs=33.6
Q ss_pred HHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchh
Q 036068 42 AMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALD 89 (178)
Q Consensus 42 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 89 (178)
.++..+...+..-.|.++++++.+.+..++..|.--.|+.+.+.|-..
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 355566666666678888888888876677777767777777666543
No 363
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=63.93 E-value=32 Score=21.17 Aligned_cols=53 Identities=15% Similarity=0.197 Sum_probs=29.0
Q ss_pred HHHHHhcCChhhhc--------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHH
Q 036068 114 IDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169 (178)
Q Consensus 114 l~~~~~~~~~~~a~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~ 169 (178)
+..+...|++++|. ||...|-+|-. .+.|..+++..-+.+|..+| .|....|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 34445555555554 55555555432 35566666666666666655 35554444
No 364
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=63.85 E-value=86 Score=28.11 Aligned_cols=13 Identities=23% Similarity=0.455 Sum_probs=5.8
Q ss_pred HHHHhcCChhhhc
Q 036068 115 DMYCICADVEKAQ 127 (178)
Q Consensus 115 ~~~~~~~~~~~a~ 127 (178)
..||+...+++|.
T Consensus 1034 ~ll~ka~~~~eAl 1046 (1265)
T KOG1920|consen 1034 ALLCKAKEWEEAL 1046 (1265)
T ss_pred HHHhhHhHHHHHH
Confidence 3344444444444
No 365
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=63.59 E-value=32 Score=21.15 Aligned_cols=45 Identities=7% Similarity=-0.014 Sum_probs=26.4
Q ss_pred cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHh
Q 036068 128 KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173 (178)
Q Consensus 128 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 173 (178)
|++....+.+.+|.+.+++-.|.++++-.+.. +.+....|-.+++
T Consensus 43 P~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 43 PEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred CChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 56666667777777777777888887777653 2233335655554
No 366
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=62.49 E-value=70 Score=24.66 Aligned_cols=55 Identities=9% Similarity=-0.013 Sum_probs=35.8
Q ss_pred HHhhcCChhHHHHHHHHhHhCCCCCcHH--HHHHHHHHh--ccccchhhHHHHHHHHHHh
Q 036068 46 GYLRVNRFREALTLFQEMQTSNIMGDEF--TIVSILTAR--ANLRALDLGEWIKTYIDKN 101 (178)
Q Consensus 46 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~--~~~~~~~~a~~~~~~m~~~ 101 (178)
.+.+.+++..|.++|+++... +.++.. .+..+..+| -..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344778888888888888876 554444 344444444 3445677888888766654
No 367
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=62.15 E-value=45 Score=22.35 Aligned_cols=67 Identities=10% Similarity=-0.080 Sum_probs=44.4
Q ss_pred hHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchh
Q 036068 23 DIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALD 89 (178)
Q Consensus 23 ~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 89 (178)
+.+.++++...-+....-..++..+...++.-.|.++++++.+.+..++..|.--.|+.+.+.|-..
T Consensus 11 ~~~~~~L~~~GlR~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 11 AQAEKLCAQRNVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 3444455444334444455666666666667789999999998887777777666677777666544
No 368
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=62.00 E-value=25 Score=24.39 Aligned_cols=55 Identities=7% Similarity=0.160 Sum_probs=40.8
Q ss_pred HHHHHHhhcCChhHHHHHHHHhHhCCC--------------CCcHHHHHHHHHHhccccchhhHHHHHH
Q 036068 42 AMIDGYLRVNRFREALTLFQEMQTSNI--------------MGDEFTIVSILTARANLRALDLGEWIKT 96 (178)
Q Consensus 42 ~li~~~~~~~~~~~a~~~~~~m~~~~~--------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 96 (178)
++|-.|-+.-+|.+..++++.|.+..+ .+.-...|.....|.+.|.+|.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 466677777789999999998876432 3333566777788888888888888875
No 369
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.97 E-value=84 Score=25.39 Aligned_cols=88 Identities=9% Similarity=0.036 Sum_probs=48.0
Q ss_pred hCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcC
Q 036068 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISG 144 (178)
Q Consensus 65 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~ 144 (178)
+.|+..+......+++.. .|++..|..+++.+...|- ...+...+-..+ |. .+......++.+.. .|
T Consensus 193 ~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~--~~It~~~V~~~l---g~-----~~~~~i~~ll~al~-~~ 259 (509)
T PRK14958 193 EENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGN--GKVLIADVKTML---GT-----IEPLLLFDILEALA-AK 259 (509)
T ss_pred HcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCC--CCcCHHHHHHHH---CC-----CCHHHHHHHHHHHH-cC
Confidence 345555554444444432 3666666666665554331 111111111111 11 23334445555554 58
Q ss_pred ChhHHHHHHHHHHHcCCCCCh
Q 036068 145 NGDKALDMFSQMLRASIKPDE 165 (178)
Q Consensus 145 ~~~~a~~~~~~m~~~g~~p~~ 165 (178)
+.++++.++++|.+.|..|..
T Consensus 260 d~~~~l~~~~~l~~~g~~~~~ 280 (509)
T PRK14958 260 AGDRLLGCVTRLVEQGVDFSN 280 (509)
T ss_pred CHHHHHHHHHHHHHcCCCHHH
Confidence 999999999999999988754
No 370
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=61.79 E-value=44 Score=22.10 Aligned_cols=95 Identities=12% Similarity=0.082 Sum_probs=68.5
Q ss_pred hcCChhHHHHHHHHhHhCCCCCcH---HHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHh--cCCh
Q 036068 49 RVNRFREALTLFQEMQTSNIMGDE---FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI--CADV 123 (178)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~~~ 123 (178)
..++.+++..+++.|.-. .|+. .++-..+ +...|++++|.++++.+...+... .|..-+.++|- .|+.
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~~---p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGAP---PYGKALLALCLNAKGDA 94 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCCc---hHHHHHHHHHHHhcCCh
Confidence 478899999999998654 4443 3443333 468899999999999998876432 34444444443 4444
Q ss_pred hhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 124 EKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 124 ~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
+ |..-.......|.-..+..+.+.+..
T Consensus 95 ~--------Wr~~A~~~le~~~~~~a~~Lv~al~g 121 (153)
T TIGR02561 95 E--------WHVHADEVLARDADADAVALVRALLG 121 (153)
T ss_pred H--------HHHHHHHHHHhCCCHhHHHHHHHHhc
Confidence 4 88888888888899999999998873
No 371
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=61.76 E-value=69 Score=24.34 Aligned_cols=137 Identities=15% Similarity=0.034 Sum_probs=80.3
Q ss_pred HHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHH-HHHHHHhHhCCCCCcHHHHHHHHHHhccccchhh
Q 036068 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREA-LTLFQEMQTSNIMGDEFTIVSILTARANLRALDL 90 (178)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a-~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 90 (178)
+-+.++|.++-+.+..+-+.+..-.......|..++....-.++. ..+.++.... ||......++++.+.......
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~ 248 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDL 248 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhH
Confidence 345555555555555555555543444555666666655544443 3344444333 899999999999998877777
Q ss_pred HHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 036068 91 GEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQML 157 (178)
Q Consensus 91 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 157 (178)
....+..+.+.....+..+.-.+ -+|+ -....|.......+..++..++...--.+|.++.
T Consensus 249 ~~~~i~~~L~~~~~~~~e~Li~I---AgR~---W~~L~d~~~l~~fle~LA~~~~~~lF~qlfaDLv 309 (340)
T PF12069_consen 249 VAILIDALLQSPRLCHPEVLIAI---AGRC---WQWLKDPQLLRLFLERLAQQDDQALFNQLFADLV 309 (340)
T ss_pred HHHHHHHHhcCcccCChHHHHHH---HhcC---chhcCCHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 77767777766544444433322 2222 2222466677777777777776444444555554
No 372
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=61.40 E-value=21 Score=20.90 Aligned_cols=63 Identities=16% Similarity=0.150 Sum_probs=44.2
Q ss_pred HHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhH
Q 036068 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLG 91 (178)
Q Consensus 25 a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 91 (178)
+..+++.+.+.++.+-...-..-+...+.+++.++++.+..+| ...|..+.+++...|....|
T Consensus 18 ~~~v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG----~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRG----KQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCchHHH
Confidence 3446666666777777666666666677888988888888886 24677777777776655444
No 373
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=61.31 E-value=25 Score=19.18 Aligned_cols=35 Identities=11% Similarity=0.141 Sum_probs=18.2
Q ss_pred hhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068 48 LRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR 82 (178)
Q Consensus 48 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 82 (178)
.+.|++=+|.++++++-...-.+....+-.+|+..
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A 44 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLA 44 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHH
Confidence 44566777777777765433233444555555543
No 374
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=60.59 E-value=93 Score=25.48 Aligned_cols=165 Identities=12% Similarity=0.063 Sum_probs=100.8
Q ss_pred CcchhHHHHHHHHHHhcCChhHHHHHhccCCCC---Chh---HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHH
Q 036068 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPER---DYV---LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIV 76 (178)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 76 (178)
+++..+|+.-+....+.|+++.+.-+|+...-| =.. -|...+... |+.+.|..++..-.+--++ +.....
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~---~~~~~~~~~~~~~~~i~~k-~~~~i~ 369 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESS---GDVSLANNVLARACKIHVK-KTPIIH 369 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHc---CchhHHHHHHHhhhhhcCC-CCcHHH
Confidence 356778999999999999999999999987754 111 233344443 7888887777665544332 322222
Q ss_pred HHHHH-hccccchhhHHHHHHHHHHhCcccch-HHHHHHHHHHHhcCChhhhc-------------cchhhHHHHHHHHH
Q 036068 77 SILTA-RANLRALDLGEWIKTYIDKNKVKNDI-FAGNALIDMYCICADVEKAQ-------------KDKFSWTTMIVGLA 141 (178)
Q Consensus 77 ~ll~~-~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~-------------~~~~~~~~li~~~~ 141 (178)
.+-.. +-..|+++.|..+++.+...- |+. .+--.=+....+.|..+.+. .+....+.+..-++
T Consensus 370 L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~ 447 (577)
T KOG1258|consen 370 LLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFA 447 (577)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHH
Confidence 22223 345578999999999888765 432 22222244445556665554 13333333333332
Q ss_pred -----hcCChhHHHHHHHHHHHcCCCCChhHHHHHHhh
Q 036068 142 -----ISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174 (178)
Q Consensus 142 -----~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a 174 (178)
-.++.+.|..++.++.+. ++++-..|..+++-
T Consensus 448 r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~ 484 (577)
T KOG1258|consen 448 RLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRF 484 (577)
T ss_pred HHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHH
Confidence 347888898888888763 55666666666553
No 375
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=60.50 E-value=69 Score=23.94 Aligned_cols=49 Identities=10% Similarity=0.115 Sum_probs=27.1
Q ss_pred HHHhhcCChhHHHHHHHHhHhCCCCCcH-------HHHHHHHHHhccccchhhHHH
Q 036068 45 DGYLRVNRFREALTLFQEMQTSNIMGDE-------FTIVSILTARANLRALDLGEW 93 (178)
Q Consensus 45 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~ 93 (178)
+-..+.+++++|...+.+++..|+.-+. .+...+.+.|.+.|+.....+
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH
Confidence 3344556666666666666666654443 234455556666665544333
No 376
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=60.36 E-value=23 Score=23.09 Aligned_cols=39 Identities=5% Similarity=-0.078 Sum_probs=31.7
Q ss_pred HHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHH
Q 036068 79 LTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117 (178)
Q Consensus 79 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 117 (178)
+-.+.+.|-+.+...+++.|++.|+..+...++.++.-.
T Consensus 116 L~~ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 116 LALAKSKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred HHHHHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 334456678888999999999999999999998887643
No 377
>PF05476 PET122: PET122; InterPro: IPR008732 The nuclear PET122 gene of Saccharomyces cerevisiae encodes a mitochondrial-localised protein that activates initiation of translation of the mitochondrial mRNA from the COX3 gene, which encodes subunit III of cytochrome c oxidase [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005740 mitochondrial envelope
Probab=60.35 E-value=63 Score=23.44 Aligned_cols=111 Identities=6% Similarity=-0.047 Sum_probs=73.1
Q ss_pred HHHhcCChhHHHHHhccCCC--CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCC--CCCcHHHHHHHHHHhccccchhh
Q 036068 15 RYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN--IMGDEFTIVSILTARANLRALDL 90 (178)
Q Consensus 15 ~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~ 90 (178)
.-|-+|++++|+..++.++. -|.......+.--++.|.++...-+|.+..... +........-+.+.+...|+.--
T Consensus 19 ~~CLNr~Fd~vL~~~R~~p~~emd~~fLq~yL~~S~qwgHv~Si~yIW~k~Vmr~~~L~V~P~lLCDi~nlal~~~k~fi 98 (267)
T PF05476_consen 19 LQCLNREFDDVLAELRQIPVDEMDYSFLQLYLARSCQWGHVPSIDYIWYKYVMRRKVLLVEPRLLCDIGNLALHEGKYFI 98 (267)
T ss_pred HHHhhhhHHHHHHHHHcCcHhHhhHHHHHHHHHHHHHHhcchHHHHHHHHHHhhccccccChhHHHHHHHHHHhcCCCcC
Confidence 34458999999999999985 488888888888889999999999998865432 22333455577777777777555
Q ss_pred HHHHH---HHHHHhCc---ccch---HHHHHHHHHHHhcCChhh
Q 036068 91 GEWIK---TYIDKNKV---KNDI---FAGNALIDMYCICADVEK 125 (178)
Q Consensus 91 a~~~~---~~m~~~~~---~~~~---~~~~~ll~~~~~~~~~~~ 125 (178)
..+++ +.+-..+. +.+. ....+=+.+|+|.-....
T Consensus 99 p~ql~~hy~~~y~~~~~~~e~~~~~YeLlRikVE~FAkgt~~~t 142 (267)
T PF05476_consen 99 PSQLYMHYQKFYGKGTSQPEWDQYEYELLRIKVESFAKGTMHKT 142 (267)
T ss_pred HHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHHHHhcCCcccc
Confidence 55554 44443432 1222 223444777777654333
No 378
>PRK09687 putative lyase; Provisional
Probab=60.34 E-value=65 Score=23.62 Aligned_cols=60 Identities=8% Similarity=0.130 Sum_probs=31.8
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCCh----hHHHHHHHHh
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRF----REALTLFQEM 63 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~m 63 (178)
+|..+....+.++...|..+-...+..-+.++|...-...+.++++.|+. +++...+..+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 44455555566666665544433333333455555555566666666652 3455555555
No 379
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.31 E-value=55 Score=22.78 Aligned_cols=89 Identities=8% Similarity=-0.047 Sum_probs=49.2
Q ss_pred HHHHHHhcCChhHHHHHhccCC-CCChhHHHH-----HHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccc
Q 036068 12 IVSRYINRGQVDIARQCFDQMP-ERDYVLWTA-----MIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL 85 (178)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~-----li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 85 (178)
+...+..++++++|..-++... .+.-..+.. |-+.....|..++|+..++.....+-. ......--+.+...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHc
Confidence 3455666777777777766543 232222222 334455667777777777665554321 11222233456677
Q ss_pred cchhhHHHHHHHHHHhC
Q 036068 86 RALDLGEWIKTYIDKNK 102 (178)
Q Consensus 86 ~~~~~a~~~~~~m~~~~ 102 (178)
|+-++|..-|+.-.+.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 77777777777666664
No 380
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=60.11 E-value=44 Score=26.16 Aligned_cols=106 Identities=15% Similarity=0.000 Sum_probs=64.7
Q ss_pred cCChhHHHHHhccCCCCChh---------------HHHHHHHHHhhcCChhHHHHHHHHhHh---CCCCCcHHHHHHHHH
Q 036068 19 RGQVDIARQCFDQMPERDYV---------------LWTAMIDGYLRVNRFREALTLFQEMQT---SNIMGDEFTIVSILT 80 (178)
Q Consensus 19 ~~~~~~a~~~~~~m~~~~~~---------------~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~ll~ 80 (178)
.++.+.+...|.+-..-|.. .|..=-.-..+.|.+.+|.++|.+-.. .++.|++..|.....
T Consensus 216 ~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~ 295 (486)
T KOG0550|consen 216 NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRAL 295 (486)
T ss_pred ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHh
Confidence 45566677777765431111 122223345677889999999888654 345667777877778
Q ss_pred HhccccchhhHHHHHHHHHHhCcccchHHHHHHH--HHHHhcCChhhhc
Q 036068 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALI--DMYCICADVEKAQ 127 (178)
Q Consensus 81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll--~~~~~~~~~~~a~ 127 (178)
+..+.|+.++|..-.+...+.. + ......+. .+|.-.++|++|.
T Consensus 296 v~~rLgrl~eaisdc~~Al~iD--~-syikall~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 296 VNIRLGRLREAISDCNEALKID--S-SYIKALLRRANCHLALEKWEEAV 341 (486)
T ss_pred hhcccCCchhhhhhhhhhhhcC--H-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899988888776665532 1 22222222 2344456666665
No 381
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=59.75 E-value=45 Score=26.79 Aligned_cols=109 Identities=13% Similarity=-0.014 Sum_probs=65.9
Q ss_pred hhcCChhHH-HHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhh
Q 036068 48 LRVNRFREA-LTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126 (178)
Q Consensus 48 ~~~~~~~~a-~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 126 (178)
...|++-.| .++++-+.+..-.|+..-..+. .+...|+++.+.+.++...+. +-.+..+...++....+.|+++.|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 334555444 3444555554445554443333 345678888888877665543 234566778888888888888887
Q ss_pred c-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 127 Q-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 127 ~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
. .+...........-..|-++++.-.+++....
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 6 23333333334444567788888888887653
No 382
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=59.74 E-value=22 Score=22.03 Aligned_cols=48 Identities=8% Similarity=0.035 Sum_probs=33.0
Q ss_pred HHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccch
Q 036068 41 TAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88 (178)
Q Consensus 41 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 88 (178)
..++..+.+.+..-.|.++++.+.+.+...+..|.---|+.+.+.|-.
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 356677777777788888999998888777777666666666665543
No 383
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=59.72 E-value=70 Score=23.74 Aligned_cols=64 Identities=9% Similarity=0.110 Sum_probs=48.4
Q ss_pred CCcchhHHHHHHHHHHhcCChhHHHHHhccCCCC-------ChhHHHHHHHHHhhcCChhHHHHHHHHhHh
Q 036068 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPER-------DYVLWTAMIDGYLRVNRFREALTLFQEMQT 65 (178)
Q Consensus 2 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 65 (178)
|+....+|..+...+.+.|+++.|...+.++.+. +....-.-....-..|+.++|+..+++...
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456678899999999999999999988887752 334444455666677888899888888766
No 384
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.47 E-value=55 Score=22.50 Aligned_cols=112 Identities=13% Similarity=0.030 Sum_probs=71.9
Q ss_pred HHhcCChhHHHHHhccCCCCChhHHHHHH-----HHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH---Hhccccc
Q 036068 16 YINRGQVDIARQCFDQMPERDYVLWTAMI-----DGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT---ARANLRA 87 (178)
Q Consensus 16 ~~~~~~~~~a~~~~~~m~~~~~~~~~~li-----~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~---~~~~~~~ 87 (178)
+++.+..++|+.-|..+.+-+...|-.|- ......|+...|...|++.-...-.|-..-=..-++ .+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 45678889999999988876555555443 234567899999999999877654444331111122 3456777
Q ss_pred hhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 88 LDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 88 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
++++..-.+-+...+-+--...-..|--+--+.|++.+|.
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~ 187 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAK 187 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHH
Confidence 8777777766655554444444556655666778887764
No 385
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=59.04 E-value=78 Score=24.12 Aligned_cols=88 Identities=11% Similarity=0.093 Sum_probs=58.4
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHhHhC---CCCCcHHHHH--HHHHHhccccchhhHHHHHHHHHH-----hCcccchHH
Q 036068 40 WTAMIDGYLRVNRFREALTLFQEMQTS---NIMGDEFTIV--SILTARANLRALDLGEWIKTYIDK-----NKVKNDIFA 109 (178)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~ 109 (178)
...++...-+.++.++|+++++++.+. --.|++..|. .+.+++...|+.+++.+++....+ .++++++++
T Consensus 78 vei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 78 VEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHS 157 (380)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhh
Confidence 334556666777899999999998653 2355665544 455666788999999999988877 677775544
Q ss_pred -HHHHHHH-HHhcCChhhhc
Q 036068 110 -GNALIDM-YCICADVEKAQ 127 (178)
Q Consensus 110 -~~~ll~~-~~~~~~~~~a~ 127 (178)
|..+-.- |-+.|+++...
T Consensus 158 ~fY~lssqYyk~~~d~a~yY 177 (380)
T KOG2908|consen 158 SFYSLSSQYYKKIGDFASYY 177 (380)
T ss_pred hHHHHHHHHHHHHHhHHHHH
Confidence 4444333 44456666543
No 386
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=58.94 E-value=23 Score=18.35 Aligned_cols=29 Identities=17% Similarity=0.368 Sum_probs=22.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 036068 137 IVGLAISGNGDKALDMFSQMLRASIKPDE 165 (178)
Q Consensus 137 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 165 (178)
|+.+.+.|--.+++.+.-++.+.|+.|..
T Consensus 11 iS~lLntgLd~etL~ici~L~e~GVnPea 39 (48)
T PF12554_consen 11 ISDLLNTGLDRETLSICIELCENGVNPEA 39 (48)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHCCCCHHH
Confidence 34556678888999999999999988763
No 387
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=58.84 E-value=1.1e+02 Score=25.97 Aligned_cols=30 Identities=13% Similarity=0.187 Sum_probs=17.7
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCC
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMP 33 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 33 (178)
|.+..|..+.+.-...-.++.|...|-+..
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~ 719 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCG 719 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhc
Confidence 556666666665555555666665555543
No 388
>TIGR01914 cas_Csa4 CRISPR-associated protein, Csa4 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein that tends to be found near CRISPR repeats. The species range for this species, so far, is exclusively archaeal. It is found so far in only four different species, and includes two tandem genes in Pyrococcus furiosus DSM 3638. This subfamily is found in a CRISPR/Cas locus we designate APERN, so the family is designated Csa4, for CRISPR/Cas Subtype Protein 4.
Probab=58.48 E-value=58 Score=24.62 Aligned_cols=65 Identities=12% Similarity=0.020 Sum_probs=33.6
Q ss_pred hcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH
Q 036068 49 RVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC 118 (178)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 118 (178)
|..+.-...++.+.+.+.+ | ..-.++.++... ++.+.....++.+.+.|..+++...+.|...++
T Consensus 288 K~r~~y~~~kfvd~L~r~d--~--e~~~~L~~ai~~-~~~~~~Ysa~R~~k~~g~~~~~~~v~~lae~l~ 352 (354)
T TIGR01914 288 KARDFYSWPKFVDFLARRD--P--EISLQLTDAILN-GDEEAFYTALRELKKSGVRYDPEQVDALAEILA 352 (354)
T ss_pred hhhhhcchHHHHHHHhccC--h--HHHHHHHHHHHc-CChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Confidence 3334444555555555442 2 334445554443 333444555555666666666666666665543
No 389
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=58.39 E-value=50 Score=21.65 Aligned_cols=155 Identities=14% Similarity=0.031 Sum_probs=104.0
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCC--CCh-hHHHHHHH-HHhhcCChhHHHHHHHHhHhCCC--CCcHHHHHHH
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPE--RDY-VLWTAMID-GYLRVNRFREALTLFQEMQTSNI--MGDEFTIVSI 78 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~-~~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l 78 (178)
....+..........+++..+.+.+..... ++. ........ .+...|+.+.|...+.+...... ......+...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 173 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLAL 173 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHh
Confidence 344566666777778888888888887764 222 23333333 78899999999999999855221 1233444445
Q ss_pred HHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cc-hhhHHHHHHHHHhcCChh
Q 036068 79 LTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KD-KFSWTTMIVGLAISGNGD 147 (178)
Q Consensus 79 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~-~~~~~~li~~~~~~~~~~ 147 (178)
...+...++.+.+...+....+.........+..+-..+...++.+.+. ++ ...+..+...+...+..+
T Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (291)
T COG0457 174 GALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYE 253 (291)
T ss_pred hhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHH
Confidence 5556778889999999988887654324677777888888888777776 22 234444444445667788
Q ss_pred HHHHHHHHHHHc
Q 036068 148 KALDMFSQMLRA 159 (178)
Q Consensus 148 ~a~~~~~~m~~~ 159 (178)
.+...+.+....
T Consensus 254 ~~~~~~~~~~~~ 265 (291)
T COG0457 254 EALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHh
Confidence 888888877654
No 390
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=57.67 E-value=33 Score=19.44 Aligned_cols=67 Identities=9% Similarity=0.009 Sum_probs=40.8
Q ss_pred hccC-CCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHH
Q 036068 29 FDQM-PERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK 100 (178)
Q Consensus 29 ~~~m-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 100 (178)
++.+ .++|...-...+..+++.++ .++...+.++.+ .++..+-...+.++.+.|+.+ +...+..+.+
T Consensus 5 ~~~l~~~~~~~vr~~a~~~L~~~~~-~~~~~~L~~~l~---d~~~~vr~~a~~aL~~i~~~~-~~~~L~~~l~ 72 (88)
T PF13646_consen 5 LQLLQNDPDPQVRAEAARALGELGD-PEAIPALIELLK---DEDPMVRRAAARALGRIGDPE-AIPALIKLLQ 72 (88)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHCCTH-HHHHHHHHHHHT---SSSHHHHHHHHHHHHCCHHHH-THHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc
Confidence 3334 45666666667777777664 466666666664 366677777777777777543 4444444443
No 391
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=57.16 E-value=93 Score=24.41 Aligned_cols=97 Identities=16% Similarity=0.005 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCC-----CChh--HHHHHHHHHhh---cCChhHHHHHHHHhHhCCCCCcHH-HHH
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPE-----RDYV--LWTAMIDGYLR---VNRFREALTLFQEMQTSNIMGDEF-TIV 76 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~--~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~-~~~ 76 (178)
.+...+...+..|+|+.|+++++.-++ +|+. .-..|+.+-.. ..+...|...-.+ ...+.|+-. .-.
T Consensus 190 A~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~--a~KL~pdlvPaav 267 (531)
T COG3898 190 AARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALE--ANKLAPDLVPAAV 267 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH--HhhcCCccchHHH
Confidence 456778888888999998888886542 3222 12223322211 1123333332222 223344432 223
Q ss_pred HHHHHhccccchhhHHHHHHHHHHhCcccc
Q 036068 77 SILTARANLRALDLGEWIKTYIDKNKVKND 106 (178)
Q Consensus 77 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 106 (178)
.-.+++.+.|+..++-.+++.+=+..+.|+
T Consensus 268 ~AAralf~d~~~rKg~~ilE~aWK~ePHP~ 297 (531)
T COG3898 268 VAARALFRDGNLRKGSKILETAWKAEPHPD 297 (531)
T ss_pred HHHHHHHhccchhhhhhHHHHHHhcCCChH
Confidence 345667778888888888877777655544
No 392
>PRK11906 transcriptional regulator; Provisional
Probab=56.81 E-value=99 Score=24.59 Aligned_cols=148 Identities=6% Similarity=-0.042 Sum_probs=85.8
Q ss_pred hHH--HHHHHHHHhcC-----ChhHHHHHhccCC---CCC---hhHHHHHHHHHh-----h----cCChhHHHHHHHHhH
Q 036068 7 ISW--TAIVSRYINRG-----QVDIARQCFDQMP---ERD---YVLWTAMIDGYL-----R----VNRFREALTLFQEMQ 64 (178)
Q Consensus 7 ~~~--~~li~~~~~~~-----~~~~a~~~~~~m~---~~~---~~~~~~li~~~~-----~----~~~~~~a~~~~~~m~ 64 (178)
..| ...+++..... ..+.|..+|.+.. +-| ...|..+-..+. . ..+..+|.++-++-.
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 55666655522 3456888888776 322 333333322222 1 233556666666666
Q ss_pred hCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cc---hh
Q 036068 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KD---KF 131 (178)
Q Consensus 65 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~---~~ 131 (178)
+.+ .-|......+-.+..-.++++.+...|++....++. ...+|...-...+-.|+.++|. |. ..
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 665 446777777777777777899999999988876643 3555555555566778888776 11 11
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH
Q 036068 132 SWTTMIVGLAISGNGDKALDMFSQML 157 (178)
Q Consensus 132 ~~~~li~~~~~~~~~~~a~~~~~~m~ 157 (178)
....-++.|+ ....+.|..+|-+-.
T Consensus 410 ~~~~~~~~~~-~~~~~~~~~~~~~~~ 434 (458)
T PRK11906 410 VIKECVDMYV-PNPLKNNIKLYYKET 434 (458)
T ss_pred HHHHHHHHHc-CCchhhhHHHHhhcc
Confidence 1112222444 455677777765533
No 393
>PHA02875 ankyrin repeat protein; Provisional
Probab=56.47 E-value=90 Score=24.00 Aligned_cols=12 Identities=0% Similarity=0.036 Sum_probs=5.5
Q ss_pred HHHHHcCCCCCh
Q 036068 154 SQMLRASIKPDE 165 (178)
Q Consensus 154 ~~m~~~g~~p~~ 165 (178)
+-+.+.|..|+.
T Consensus 219 ~~Ll~~gad~n~ 230 (413)
T PHA02875 219 RLFIKRGADCNI 230 (413)
T ss_pred HHHHHCCcCcch
Confidence 333444555543
No 394
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=56.16 E-value=89 Score=23.85 Aligned_cols=79 Identities=13% Similarity=0.235 Sum_probs=52.8
Q ss_pred HHHHHHHhcCChhHHHHHhccCC-------CCChhHHHH--HHHHHhhcCChhHHHHHHHHhHh-----CCCCCcHHH-H
Q 036068 11 AIVSRYINRGQVDIARQCFDQMP-------ERDYVLWTA--MIDGYLRVNRFREALTLFQEMQT-----SNIMGDEFT-I 75 (178)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~-------~~~~~~~~~--li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~-~ 75 (178)
.++...-+.++.++|+++++++. +|+.+.|-. ..+.+...|+..++.+.+++.++ .|++|++.+ |
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 34555556778999999999886 356666654 44566678999999999999877 677776543 3
Q ss_pred HHHHHH-hccccchh
Q 036068 76 VSILTA-RANLRALD 89 (178)
Q Consensus 76 ~~ll~~-~~~~~~~~ 89 (178)
..+-.- |.+.|++.
T Consensus 160 Y~lssqYyk~~~d~a 174 (380)
T KOG2908|consen 160 YSLSSQYYKKIGDFA 174 (380)
T ss_pred HHHHHHHHHHHHhHH
Confidence 333333 33444443
No 395
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=55.49 E-value=71 Score=22.56 Aligned_cols=78 Identities=8% Similarity=-0.048 Sum_probs=40.4
Q ss_pred hccccchhhHHHHHHHHHHhCcccchHHHHHH----HHHHHhcCChhhhc-------cchhhHHHHH----HHHHhcCCh
Q 036068 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNAL----IDMYCICADVEKAQ-------KDKFSWTTMI----VGLAISGNG 146 (178)
Q Consensus 82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l----l~~~~~~~~~~~a~-------~~~~~~~~li----~~~~~~~~~ 146 (178)
+.+.|++++|..-|...+..-++.....-.++ ..++.+.+.++.|. .--.||+..+ .+|-+...+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 34556666666666666655433322222222 22455555555554 1112233222 345666777
Q ss_pred hHHHHHHHHHHHc
Q 036068 147 DKALDMFSQMLRA 159 (178)
Q Consensus 147 ~~a~~~~~~m~~~ 159 (178)
++|++=|+++++.
T Consensus 185 eealeDyKki~E~ 197 (271)
T KOG4234|consen 185 EEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHh
Confidence 7888777777654
No 396
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=55.34 E-value=50 Score=20.71 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=12.1
Q ss_pred HHHHHhhcCChhHHHHHHHHhHhCC
Q 036068 43 MIDGYLRVNRFREALTLFQEMQTSN 67 (178)
Q Consensus 43 li~~~~~~~~~~~a~~~~~~m~~~~ 67 (178)
+|..+.++...++|+++.+-|.++|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3344444444455555555555544
No 397
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=55.05 E-value=1.2e+02 Score=24.94 Aligned_cols=121 Identities=8% Similarity=0.046 Sum_probs=81.4
Q ss_pred ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHH-HHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHH
Q 036068 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTI-VSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALI 114 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 114 (178)
+...|+.||.---...+.+.+..+++.++.. -|...-| -....-=.+.|..+.+..+|++-.+ +++.+...|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 5556666776655555667777777777755 3554433 2333333567777888888877666 3456777777777
Q ss_pred HHHHhc-CChhhhc--------------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 115 DMYCIC-ADVEKAQ--------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 115 ~~~~~~-~~~~~a~--------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
..++.. |+.+... .....|...|.--..+++++.+.++|+++++.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 665553 3333322 47778889998889999999999999999874
No 398
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=54.51 E-value=1.3e+02 Score=25.44 Aligned_cols=99 Identities=12% Similarity=0.062 Sum_probs=57.5
Q ss_pred hHHHHHHHHh-HhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhh
Q 036068 54 REALTLFQEM-QTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFS 132 (178)
Q Consensus 54 ~~a~~~~~~m-~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 132 (178)
++....+.+. ...|+..+......+++.. .|++..+..+++.+...|- +..+...+-...... +...
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~--g~It~e~V~~lLG~~--------d~~~ 248 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGS--GKVAENDVRQMIGAV--------DKQY 248 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcC--CCcCHHHHHHHHccc--------CHHH
Confidence 3334444433 3456666666666666654 4788888888877665431 111222222221111 2223
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 036068 133 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165 (178)
Q Consensus 133 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 165 (178)
...|+.++.+ ++..+++.++++|.+.|+.+..
T Consensus 249 If~LldAL~~-~d~~~al~~l~~L~~~G~d~~~ 280 (709)
T PRK08691 249 LYELLTGIIN-QDGAALLAKAQEMAACAVGFDN 280 (709)
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHHH
Confidence 4556666554 8999999999999998876653
No 399
>PRK07632 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=54.17 E-value=1.1e+02 Score=25.84 Aligned_cols=34 Identities=18% Similarity=0.358 Sum_probs=26.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHH
Q 036068 136 MIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169 (178)
Q Consensus 136 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~ 169 (178)
.+..+...|+.+.|.++|+.|....+.|...|+.
T Consensus 123 ~vAl~l~~~~~~~a~~~y~~ls~~~f~paTPtl~ 156 (699)
T PRK07632 123 IVALYLANGDKAKAKQFISAMVEQRYQPATPTFL 156 (699)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCeecCCCccc
Confidence 3344456788999999999999888888776654
No 400
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=53.96 E-value=83 Score=22.86 Aligned_cols=86 Identities=13% Similarity=0.120 Sum_probs=48.2
Q ss_pred HHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCC-CCC-----cHHHHHHHHHHhccc
Q 036068 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN-IMG-----DEFTIVSILTARANL 85 (178)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~-----~~~~~~~ll~~~~~~ 85 (178)
++-.|+|.-+...=..+|+....| ..|+..+.+.|+.+.|-.++--+...+ ... +...-.-++....+.
T Consensus 159 Ivv~C~RKtE~~~W~~LF~~lg~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~ 233 (258)
T PF07064_consen 159 IVVNCARKTEVRYWPYLFDYLGSP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALES 233 (258)
T ss_pred HHHHHHHhhHHHHHHHHHHhcCCH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhc
Confidence 334444444444444444444322 245666667777777766665554332 122 334455666777777
Q ss_pred cchhhHHHHHHHHHHhC
Q 036068 86 RALDLGEWIKTYIDKNK 102 (178)
Q Consensus 86 ~~~~~a~~~~~~m~~~~ 102 (178)
++++-+.++.+.+..-+
T Consensus 234 ~~w~Lc~eL~RFL~~ld 250 (258)
T PF07064_consen 234 GDWDLCFELVRFLKALD 250 (258)
T ss_pred ccHHHHHHHHHHHHHhC
Confidence 88888888877776544
No 401
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=53.63 E-value=45 Score=19.73 Aligned_cols=17 Identities=6% Similarity=0.049 Sum_probs=9.0
Q ss_pred cchhhHHHHHHHHHHhC
Q 036068 86 RALDLGEWIKTYIDKNK 102 (178)
Q Consensus 86 ~~~~~a~~~~~~m~~~~ 102 (178)
...+++.++++.+..+|
T Consensus 48 t~~~k~~~Lld~L~~RG 64 (90)
T cd08332 48 TSFSQNVALLNLLPKRG 64 (90)
T ss_pred CcHHHHHHHHHHHHHhC
Confidence 34455555555555554
No 402
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.52 E-value=72 Score=23.09 Aligned_cols=82 Identities=11% Similarity=0.039 Sum_probs=44.9
Q ss_pred HHhhcCChhHHHHHHHHhHh---C--CCCCcHHHHHHHHHHhccccchhhHHHHHHHHH----HhCcccchHHHHHHHHH
Q 036068 46 GYLRVNRFREALTLFQEMQT---S--NIMGDEFTIVSILTARANLRALDLGEWIKTYID----KNKVKNDIFAGNALIDM 116 (178)
Q Consensus 46 ~~~~~~~~~~a~~~~~~m~~---~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~~~~~ll~~ 116 (178)
.+...+.+++|.++|.+--. . +-..--..|.-......+.|.-.++-..|-++- +..+..-+.....-|..
T Consensus 23 lfgg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieI 102 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEI 102 (288)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHH
Confidence 34455678888888876311 1 111112345555566666666555544443332 22222234556666788
Q ss_pred HHhcCChhhhc
Q 036068 117 YCICADVEKAQ 127 (178)
Q Consensus 117 ~~~~~~~~~a~ 127 (178)
|...|++..|-
T Consensus 103 yt~~Grf~~aA 113 (288)
T KOG1586|consen 103 YTDMGRFTMAA 113 (288)
T ss_pred HHhhhHHHHHH
Confidence 88888888765
No 403
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=53.48 E-value=29 Score=24.77 Aligned_cols=77 Identities=14% Similarity=0.142 Sum_probs=55.5
Q ss_pred hhHHHHHhccCCCC--ChhHHHHHHHHHhhcCChhHHHHHHHHhHh----CC-CCCcHHHHHHHHHHhccccchhhHHHH
Q 036068 22 VDIARQCFDQMPER--DYVLWTAMIDGYLRVNRFREALTLFQEMQT----SN-IMGDEFTIVSILTARANLRALDLGEWI 94 (178)
Q Consensus 22 ~~~a~~~~~~m~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~ 94 (178)
+..|.+.|..-... -...--.+-..|.+.|++++|.++|+.+.. .| ..+...+...+..+..+.|+.+....+
T Consensus 161 L~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 161 LEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34566666655542 555556788889999999999999999842 22 345567778888899999998887766
Q ss_pred HHHH
Q 036068 95 KTYI 98 (178)
Q Consensus 95 ~~~m 98 (178)
.=+|
T Consensus 241 ~leL 244 (247)
T PF11817_consen 241 SLEL 244 (247)
T ss_pred HHHH
Confidence 5444
No 404
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=53.15 E-value=1.3e+02 Score=27.18 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=9.6
Q ss_pred HHHHHHhcCChhHHHHHHH
Q 036068 136 MIVGLAISGNGDKALDMFS 154 (178)
Q Consensus 136 li~~~~~~~~~~~a~~~~~ 154 (178)
.+..+|+...+++|.++..
T Consensus 1032 av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1032 AVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred HHHHHhhHhHHHHHHHHHH
Confidence 3444455555555555443
No 405
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=52.81 E-value=56 Score=20.51 Aligned_cols=37 Identities=8% Similarity=0.027 Sum_probs=26.6
Q ss_pred HHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHH
Q 036068 77 SILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALI 114 (178)
Q Consensus 77 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 114 (178)
++++-+.++...++|.++.+.|.+.|- .+...-+.|-
T Consensus 66 tViD~lrRC~T~EEALEVInylek~GE-It~e~A~eLr 102 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRGE-ITPEEAKELR 102 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 456667778888999999999999993 4444434333
No 406
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=52.71 E-value=56 Score=21.35 Aligned_cols=62 Identities=6% Similarity=0.059 Sum_probs=39.2
Q ss_pred HHHHHHhhcC---ChhHHHHHHHHhHhCCCC-CcHHHHHHHHHHhccccchhhHHHHHHHHHHhCc
Q 036068 42 AMIDGYLRVN---RFREALTLFQEMQTSNIM-GDEFTIVSILTARANLRALDLGEWIKTYIDKNKV 103 (178)
Q Consensus 42 ~li~~~~~~~---~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 103 (178)
.+-.++.++. +..+.+.+|+++.+..-+ ......--|.-++.+.++++.+.++++.+.+...
T Consensus 37 ~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~ 102 (149)
T KOG3364|consen 37 NLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP 102 (149)
T ss_pred HHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC
Confidence 3444555544 456667788887763211 1223334466678888899999998888887653
No 407
>PLN03025 replication factor C subunit; Provisional
Probab=52.34 E-value=96 Score=23.09 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=25.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh
Q 036068 133 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 166 (178)
Q Consensus 133 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 166 (178)
-..++... ..+++++|+..+.+|...|+.|...
T Consensus 228 i~~~i~~~-~~~~~~~a~~~l~~ll~~g~~~~~I 260 (319)
T PLN03025 228 VKNIVRNC-LKGKFDDACDGLKQLYDLGYSPTDI 260 (319)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 33444444 4689999999999999999988643
No 408
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=52.31 E-value=32 Score=20.36 Aligned_cols=59 Identities=7% Similarity=0.039 Sum_probs=38.0
Q ss_pred HHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccch
Q 036068 26 RQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88 (178)
Q Consensus 26 ~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 88 (178)
..+++.+.+.++.|-...-...+...+.+++.++++.+..+| | ..|..+..++...+..
T Consensus 23 ~~v~~~L~~~gvlt~~~~~~I~~~~t~~~k~~~Lld~L~~RG--~--~AF~~F~~aL~~~~~~ 81 (90)
T cd08332 23 DELLIHLLQKDILTDSMAESIMAKPTSFSQNVALLNLLPKRG--P--RAFSAFCEALRETSQE 81 (90)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHhC--h--hHHHHHHHHHHhcChH
Confidence 345555555555555555555555567788888888888886 2 4677777777655543
No 409
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=52.25 E-value=21 Score=24.81 Aligned_cols=53 Identities=17% Similarity=0.254 Sum_probs=42.2
Q ss_pred HHHHHHHHhcCChhHHHHHhccCCC------------------CChhHHHHHHHHHhhcCChhHHHHHHHH
Q 036068 10 TAIVSRYINRGQVDIARQCFDQMPE------------------RDYVLWTAMIDGYLRVNRFREALTLFQE 62 (178)
Q Consensus 10 ~~li~~~~~~~~~~~a~~~~~~m~~------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~ 62 (178)
-+++-.|.+..+|.+...+++.|.+ +--...|.....+.++|.+|.|..++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 3567778888889988888887742 2344678888999999999999998885
No 410
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.96 E-value=1.1e+02 Score=23.57 Aligned_cols=82 Identities=12% Similarity=-0.063 Sum_probs=36.5
Q ss_pred HHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhC---CCCCcHHHHHHHHHHhccccchh
Q 036068 16 YINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTS---NIMGDEFTIVSILTARANLRALD 89 (178)
Q Consensus 16 ~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~~~~~ 89 (178)
+...|-+++|.+.-++..+ -|.-.-.++-+.+.-.|+..++.++..+-... +--.-...|--..-.+...+.++
T Consensus 185 L~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye 264 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYE 264 (491)
T ss_pred HHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchh
Confidence 3344555555555554433 13333344444444445555554443332111 00001122333333455667777
Q ss_pred hHHHHHHH
Q 036068 90 LGEWIKTY 97 (178)
Q Consensus 90 ~a~~~~~~ 97 (178)
.|+++|+.
T Consensus 265 ~aleIyD~ 272 (491)
T KOG2610|consen 265 KALEIYDR 272 (491)
T ss_pred HHHHHHHH
Confidence 77887753
No 411
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=51.78 E-value=35 Score=19.94 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=21.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcC
Q 036068 135 TMIVGLAISGNGDKALDMFSQMLRAS 160 (178)
Q Consensus 135 ~li~~~~~~~~~~~a~~~~~~m~~~g 160 (178)
++++.+.++.--++|+++++-|.+.|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 45667777888889999999998877
No 412
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=51.73 E-value=22 Score=15.45 Aligned_cols=27 Identities=4% Similarity=-0.199 Sum_probs=13.2
Q ss_pred chhhHHHHHHHHHHhCcccchHHHHHHH
Q 036068 87 ALDLGEWIKTYIDKNKVKNDIFAGNALI 114 (178)
Q Consensus 87 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll 114 (178)
+.+.+..+|+.+.+... .++..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~-~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFP-KSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCC-CChHHHHHHH
Confidence 44555566665554432 3444444443
No 413
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=51.38 E-value=66 Score=20.95 Aligned_cols=62 Identities=15% Similarity=0.037 Sum_probs=40.5
Q ss_pred HHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcccc
Q 036068 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLR 86 (178)
Q Consensus 25 a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 86 (178)
+.+.+++-.-+-+..-..++..+.+.++.-.|.++++++.+.+...+..|.--.++.+...|
T Consensus 8 ~~~~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34444443333344455677788877777889999999988876666666555566665554
No 414
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=51.37 E-value=43 Score=18.81 Aligned_cols=35 Identities=14% Similarity=0.331 Sum_probs=26.7
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhh
Q 036068 140 LAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSA 174 (178)
Q Consensus 140 ~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a 174 (178)
....|+.+.+.+++++..+.|+.|.......+..+
T Consensus 11 al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~ 45 (79)
T PF02607_consen 11 ALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPA 45 (79)
T ss_dssp HHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34578999999999999988888877766666554
No 415
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=51.27 E-value=65 Score=24.51 Aligned_cols=38 Identities=21% Similarity=0.220 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHH
Q 036068 37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFT 74 (178)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 74 (178)
...--.|++.|...|-...|.+.|+.+.-+.+.-|...
T Consensus 217 ~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~ 254 (365)
T PF09797_consen 217 YQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLG 254 (365)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhH
Confidence 33333455666666666666666666554444444443
No 416
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=49.95 E-value=68 Score=20.66 Aligned_cols=49 Identities=18% Similarity=0.125 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 036068 109 AGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASI 161 (178)
Q Consensus 109 ~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 161 (178)
-|...+.++...|.-. +|. .+..++.-....|+++.|+++.+-.++.|.
T Consensus 31 ~Y~p~v~g~L~~g~g~---qd~-Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l 79 (132)
T PF05944_consen 31 KYLPWVEGVLASGSGA---QDD-VLMTVMVWLFDVGDFDGALDIAEYAIEHGL 79 (132)
T ss_pred hHHHHHHHHHHcCCCC---cCc-hHHhhHhhhhcccCHHHHHHHHHHHHHcCC
Confidence 5777788888777643 233 444677788889999999999999999875
No 417
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=49.82 E-value=86 Score=21.82 Aligned_cols=121 Identities=8% Similarity=-0.104 Sum_probs=62.7
Q ss_pred hHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHH-HHHHHHHHhccccchhhHHHHHHHHHHhCcc--cchHHHHHH-
Q 036068 38 VLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEF-TIVSILTARANLRALDLGEWIKTYIDKNKVK--NDIFAGNAL- 113 (178)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~l- 113 (178)
...+.+++.+...|+++.|-++|.-+.+.. ..|.. .|..=+..+.+.+.-....+.++.|...-.. ......+..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~~ 120 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRRI 120 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhhc
Confidence 356678888888999999999998887764 23433 3444445555555444444555555432110 000011111
Q ss_pred HHHHHhcCChhhhc--cchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 114 IDMYCICADVEKAQ--KDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 114 l~~~~~~~~~~~a~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
+.-..+.|.....- .-...|..++..-.+....+++.++.++|.+-
T Consensus 121 ~~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~El 168 (199)
T PF04090_consen 121 IAPVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDEL 168 (199)
T ss_pred ccccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 11122222222110 11224555665555556667778888887764
No 418
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=49.50 E-value=91 Score=22.02 Aligned_cols=106 Identities=12% Similarity=0.065 Sum_probs=66.6
Q ss_pred ChhHHHHHHHHHhhcCC----hhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccc--cchhhHHHHHHHHHHhCcccchHH
Q 036068 36 DYVLWTAMIDGYLRVNR----FREALTLFQEMQTSNIMGDEFTIVSILTARANL--RALDLGEWIKTYIDKNKVKNDIFA 109 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~----~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~m~~~~~~~~~~~ 109 (178)
+..|...||..+-+... +++-.++|+.+ .-|..+.+.|=+. |.++. -++-+.+...|+..++.+
T Consensus 92 s~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i---------~~Wr~vF~~~D~D~SG~I~~-sEL~~Al~~~Gy~Lspq~ 161 (221)
T KOG0037|consen 92 SIETCRLMISMFDRDNSGTIGFKEFKALWKYI---------NQWRNVFRTYDRDRSGTIDS-SELRQALTQLGYRLSPQF 161 (221)
T ss_pred CHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH---------HHHHHHHHhcccCCCCcccH-HHHHHHHHHcCcCCCHHH
Confidence 66677777777765443 33333334332 3355555555332 33332 456667778899999999
Q ss_pred HHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 036068 110 GNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQML 157 (178)
Q Consensus 110 ~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 157 (178)
++.|++-|.+.+.- ...+.-.|.+|++...+-++++-++.-.
T Consensus 162 ~~~lv~kyd~~~~g------~i~FD~FI~ccv~L~~lt~~Fr~~D~~q 203 (221)
T KOG0037|consen 162 YNLLVRKYDRFGGG------RIDFDDFIQCCVVLQRLTEAFRRRDTAQ 203 (221)
T ss_pred HHHHHHHhccccCC------ceeHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999977522 3457888888887766666555544433
No 419
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=48.94 E-value=53 Score=19.18 Aligned_cols=62 Identities=10% Similarity=-0.002 Sum_probs=36.1
Q ss_pred HHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHH
Q 036068 26 RQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGE 92 (178)
Q Consensus 26 ~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 92 (178)
.+++..|.-=+......+.......|+.+.|..+++.+. . .|+ -|..+++++...|.-..|.
T Consensus 21 ~~il~~L~~Lt~~d~e~I~a~~~~~G~~~aa~~Ll~~L~-r--~~~--Wf~~Fl~AL~~~~~~~LA~ 82 (84)
T cd08789 21 EEVLPYLTCLTAEDKERIQAAENNSGNIKAAWTLLDTLV-R--RDN--WLEPFLDALRECGLGHLAR 82 (84)
T ss_pred HHHHhhCCcCCHHHHHHHHHHHhcCChHHHHHHHHHHHh-c--cCC--hHHHHHHHHHHcCCHHHHH
Confidence 334444442233334444555556788888888888887 3 233 4566777777776655443
No 420
>PRK11906 transcriptional regulator; Provisional
Probab=48.39 E-value=1.4e+02 Score=23.82 Aligned_cols=98 Identities=10% Similarity=-0.019 Sum_probs=63.1
Q ss_pred hhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc-HHHHHHHHHHhccccchhhHHHHHHH
Q 036068 22 VDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD-EFTIVSILTARANLRALDLGEWIKTY 97 (178)
Q Consensus 22 ~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 97 (178)
..+|.++.++..+ .|...-..+-.+..-.++.+.|...|++-...+ || +.+|...--.+.-.|+.++|.+.++.
T Consensus 320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 320 AQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3445555554432 367776667676777888999999999977764 55 34444444445567889999999888
Q ss_pred HHHhCc-ccchHHHHHHHHHHHhcC
Q 036068 98 IDKNKV-KNDIFAGNALIDMYCICA 121 (178)
Q Consensus 98 m~~~~~-~~~~~~~~~ll~~~~~~~ 121 (178)
..+..+ ..........++.|+..+
T Consensus 398 alrLsP~~~~~~~~~~~~~~~~~~~ 422 (458)
T PRK11906 398 SLQLEPRRRKAVVIKECVDMYVPNP 422 (458)
T ss_pred HhccCchhhHHHHHHHHHHHHcCCc
Confidence 555432 333444555566777665
No 421
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.33 E-value=92 Score=21.74 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=46.5
Q ss_pred HHHHHHhcCChhHHHHHhccCCCCChhH--HHHHHHHHhhcCChhHHHHHHHHhHhCC
Q 036068 12 IVSRYINRGQVDIARQCFDQMPERDYVL--WTAMIDGYLRVNRFREALTLFQEMQTSN 67 (178)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~ 67 (178)
|.+.....|.+|+|+.+++....++... ...--+.+...|+.++|..-|.+-+..+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 5567788999999999999999875544 4455568899999999999999988875
No 422
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=48.16 E-value=1.2e+02 Score=22.97 Aligned_cols=22 Identities=5% Similarity=0.276 Sum_probs=11.7
Q ss_pred cchhhHHHHHHHHHhcCChhHH
Q 036068 128 KDKFSWTTMIVGLAISGNGDKA 149 (178)
Q Consensus 128 ~~~~~~~~li~~~~~~~~~~~a 149 (178)
+...+|.-|+.++|.+|+.+..
T Consensus 319 rhlK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 319 RHLKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHHHhhhHHHHHHhcCChHHHH
Confidence 4455555555555555555443
No 423
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=47.67 E-value=92 Score=21.53 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=21.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 134 TTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 134 ~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
...+..|.+.|.+++|.+++++....
T Consensus 115 ~~aV~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 115 EQAVAVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHhcC
Confidence 34667889999999999999998763
No 424
>PRK09857 putative transposase; Provisional
Probab=47.48 E-value=1.1e+02 Score=22.58 Aligned_cols=66 Identities=6% Similarity=-0.036 Sum_probs=41.7
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccc
Q 036068 40 WTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKND 106 (178)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 106 (178)
+..++....+.++.++..++++.+.+. +.......-++..-+.+.|.-+++.++-..|...|+..+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 456666656667776667777666554 222333444566666666766677777788888887654
No 425
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=47.25 E-value=1.3e+02 Score=23.01 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=11.5
Q ss_pred HHHHHHHhcCChhHHHHHhccC
Q 036068 11 AIVSRYINRGQVDIARQCFDQM 32 (178)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m 32 (178)
.....|++-||.+.|.+.+.+.
T Consensus 109 ~kaeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 109 RKAEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHHHhccHHHHHHHHHHH
Confidence 3344555555555555555543
No 426
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=47.23 E-value=85 Score=21.01 Aligned_cols=101 Identities=13% Similarity=0.065 Sum_probs=61.9
Q ss_pred HhhcCChhHHHHHHHHhHhCCCCCcHHHHHHH-HHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH-HHHhcCChh
Q 036068 47 YLRVNRFREALTLFQEMQTSNIMGDEFTIVSI-LTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID-MYCICADVE 124 (178)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~-~~~~~~~~~ 124 (178)
-.+.++.+++..+++-+.-. +|.......+ ...+.+.|++.+|.++++.+..... .......|+. ++...|+.+
T Consensus 20 al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~--~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAP--GFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCC--CChHHHHHHHHHHHHcCChH
Confidence 34677899999999998664 4554433222 2235788999999999999877652 2222222222 233344443
Q ss_pred hhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 125 ~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
|..........+.-..+..+.+.+...
T Consensus 96 --------Wr~~A~evle~~~d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 96 --------WRRYADEVLESGADPDARALVRALLAR 122 (160)
T ss_pred --------HHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 666666666666566666666666543
No 427
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=46.13 E-value=72 Score=19.88 Aligned_cols=78 Identities=12% Similarity=0.003 Sum_probs=44.4
Q ss_pred CChhHHHHHhccCCCC-ChhHH--HHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHH
Q 036068 20 GQVDIARQCFDQMPER-DYVLW--TAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKT 96 (178)
Q Consensus 20 ~~~~~a~~~~~~m~~~-~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 96 (178)
...++|..+.+.+.+. +..-- -+-+..+.+.|++++|+ ..- ...-.||...|.++ +-.+.|--+++...+.
T Consensus 20 HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~AL--l~~--~~~~~pdL~p~~AL--~a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEAL--LLP--QCHCYPDLEPWAAL--CAWKLGLASALESRLT 93 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHH--HHH--TTS--GGGHHHHHH--HHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHH--Hhc--ccCCCccHHHHHHH--HHHhhccHHHHHHHHH
Confidence 3467777777776642 22222 23345677889999982 222 22336787777444 4457777778888888
Q ss_pred HHHHhCc
Q 036068 97 YIDKNKV 103 (178)
Q Consensus 97 ~m~~~~~ 103 (178)
++..+|-
T Consensus 94 rla~~g~ 100 (116)
T PF09477_consen 94 RLASSGS 100 (116)
T ss_dssp HHCT-SS
T ss_pred HHHhCCC
Confidence 7777663
No 428
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=46.00 E-value=1.2e+02 Score=22.18 Aligned_cols=85 Identities=9% Similarity=0.033 Sum_probs=56.6
Q ss_pred hHHHHHHHHHhhcCChh---HHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHH
Q 036068 38 VLWTAMIDGYLRVNRFR---EALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALI 114 (178)
Q Consensus 38 ~~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 114 (178)
.+...|+.+|...+..+ +|.++++.+..... -....+..-++.+.+.++.+.+.+.+..|...- ......+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 35677888888877654 56666666654432 124566667788888899999999999998863 22345667777
Q ss_pred HHHHhcCChh
Q 036068 115 DMYCICADVE 124 (178)
Q Consensus 115 ~~~~~~~~~~ 124 (178)
..+....+..
T Consensus 163 ~~i~~l~~~~ 172 (278)
T PF08631_consen 163 HHIKQLAEKS 172 (278)
T ss_pred HHHHHHHhhC
Confidence 6665444433
No 429
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.48 E-value=1.8e+02 Score=24.29 Aligned_cols=32 Identities=16% Similarity=0.276 Sum_probs=23.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 036068 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 164 (178)
Q Consensus 132 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 164 (178)
....++.+.. .|+...+++++++|.+.|..|.
T Consensus 253 ~i~~LldaL~-~~d~~~al~~l~~l~~~G~~~~ 284 (618)
T PRK14951 253 HVFRLIDALA-QGDGRTVVETADELRLNGLSAA 284 (618)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 3444555555 4889999999999998887654
No 430
>PF08314 Sec39: Secretory pathway protein Sec39; InterPro: IPR013244 Sec39 was originally identified as a protein involved in ER-Golgi transport in a large scale promoter shut down analysis of essential yeast genes []. A subsequent study found that Sec39p (Dsl3p) is required for Golgi-ER retrograde transport and is part of a very stable protein complex that also includes Dsl1p (in mammals ZW10), Tip20p (Rint-1) and the ER localized Q-SNARE proteins Ufe1p (syntaxin-18), Sec20p and Use1p []. This was confirmed in a genome-wide analysis of protein complexes []. ; PDB: 3K8P_D.
Probab=44.74 E-value=1.9e+02 Score=24.45 Aligned_cols=153 Identities=8% Similarity=0.066 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHh-----------hcCChhHHHHHHHHhHhC-CCCC
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYL-----------RVNRFREALTLFQEMQTS-NIMG 70 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~-----------~~~~~~~a~~~~~~m~~~-~~~~ 70 (178)
......+++++...|+++.|.+++..-.. +.......++.+.. ..|...+|.++++-+... .-.+
T Consensus 432 ~~~~~~~l~~LL~~~~f~la~~~~~~~~~~~l~~~~~~~lvl~~~~e~fd~Asn~n~~~g~lk~A~~~L~l~~~~~~~~~ 511 (715)
T PF08314_consen 432 DEIEEIFLEALLSSGRFSLAKSLYEESSSSPLSSEKVEDLVLKAAWEFFDNASNGNRTRGGLKKARECLNLFPPTFPNSP 511 (715)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHTT---TT-HHHHHHHHHHHHHHHHH-SS--TTSHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccCcCCccH
Confidence 34567889999999999999999998653 23333444443322 235577788877777554 0012
Q ss_pred cHHHHHHHHHHhccccchhh------------------HHHHHHHHHHhCcccchHHHHHHHH---HHHhcCCh-----h
Q 036068 71 DEFTIVSILTARANLRALDL------------------GEWIKTYIDKNKVKNDIFAGNALID---MYCICADV-----E 124 (178)
Q Consensus 71 ~~~~~~~ll~~~~~~~~~~~------------------a~~~~~~m~~~~~~~~~~~~~~ll~---~~~~~~~~-----~ 124 (178)
...-...+|.+.....++.- -..+.+.+.+.+.+. -..+..++. -++..|.. +
T Consensus 512 ~~~~~~~Li~a~~~Ls~f~l~l~~g~p~~P~~ir~~~dpl~LI~~vLe~np~a-Y~~~~~ll~l~~~L~~~~~~~~~~~~ 590 (715)
T PF08314_consen 512 RIQREKDLIKATHALSEFSLVLQPGVPFLPVQIRLHSDPLSLISKVLEQNPKA-YKQLEKLLDLANNLVLAGSDESSESD 590 (715)
T ss_dssp HHHHHHHHHHHHHHHTTS-----------HHHHHTTT-THHHHHHHHHHSTTG-GG-HHHHHHHHHHHHHH-----TT--
T ss_pred HHHHHHHHHHHHHHHHhCCeecCCCCCCCCceeeccCChHHHHHHHHHhCchh-hcCHHHHHHHHHHHHHHhcccccccc
Confidence 34445566666655544432 344555555554321 111122222 22222111 1
Q ss_pred hhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 125 KAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 125 ~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
....-.......|.+....+||+-|.++..++.+.
T Consensus 591 ~~~~~~ri~~~~i~~AL~~~Df~~Ay~~~~~ll~~ 625 (715)
T PF08314_consen 591 DEAAERRILSMCIEAALVEDDFETAYSYCLELLDP 625 (715)
T ss_dssp -SSTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11112233344567777889999999988887764
No 431
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=44.61 E-value=1.2e+02 Score=22.07 Aligned_cols=58 Identities=19% Similarity=0.286 Sum_probs=42.3
Q ss_pred HHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccc
Q 036068 26 RQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL 85 (178)
Q Consensus 26 ~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 85 (178)
..+|+-..+|.+.....++..+.+ +++++|.++++++.+.|..|. ...+++++.+...
T Consensus 228 enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~-Dii~~~FRv~K~~ 285 (333)
T KOG0991|consen 228 ENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPE-DIITTLFRVVKNM 285 (333)
T ss_pred hhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHhc
Confidence 444444556777777777777655 579999999999999998765 4557777776554
No 432
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=44.56 E-value=66 Score=18.96 Aligned_cols=53 Identities=13% Similarity=0.155 Sum_probs=31.2
Q ss_pred hhcCChhHHHHHHHHhH----hCCCCCc----HHHHHHHHHHhccccchhhHHHHHHHHHH
Q 036068 48 LRVNRFREALTLFQEMQ----TSNIMGD----EFTIVSILTARANLRALDLGEWIKTYIDK 100 (178)
Q Consensus 48 ~~~~~~~~a~~~~~~m~----~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 100 (178)
.+.|++.+|.+-+.+.. ..+.... ......+.......|++++|.+.+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 46678888865555543 3332221 12223344456677889999888877664
No 433
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=44.36 E-value=1.4e+02 Score=22.54 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=21.7
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCC
Q 036068 139 GLAISGNGDKALDMFSQMLRASIKPD 164 (178)
Q Consensus 139 ~~~~~~~~~~a~~~~~~m~~~g~~p~ 164 (178)
-....|+..+|..+++++...|..|=
T Consensus 217 dail~g~~~~a~~~l~~L~~~ge~p~ 242 (334)
T COG1466 217 DALLKGDVKKALRLLRDLLLEGEEPL 242 (334)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCcHH
Confidence 44568999999999999999887663
No 434
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=43.97 E-value=1.4e+02 Score=22.61 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHhcCChhhhc
Q 036068 107 IFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 107 ~~~~~~ll~~~~~~~~~~~a~ 127 (178)
..+|..|+.++|..|+.+-..
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 456888999999999888654
No 435
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=43.87 E-value=24 Score=28.03 Aligned_cols=94 Identities=10% Similarity=0.075 Sum_probs=53.5
Q ss_pred hhHHHHHhccCCC--CC----------hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc-----
Q 036068 22 VDIARQCFDQMPE--RD----------YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN----- 84 (178)
Q Consensus 22 ~~~a~~~~~~m~~--~~----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----- 84 (178)
-..-+++|++++- |. ...|++|..++.++-.+.+. .+=++|...|-. -+-++-+|.+
T Consensus 463 ~q~~le~F~~I~Iedprv~e~ctk~~~psPy~iL~~cl~Rn~g~~d~-~ik~E~i~~~nq-----kse~im~~Gkht~~~ 536 (650)
T KOG4334|consen 463 QQGFLELFKKIKIEDPRVVEMCTKCAIPSPYNILRDCLSRNLGWNDL-VIKKEMIGNGNQ-----KSEVIMILGKHTEEA 536 (650)
T ss_pred chhHHHHhhcccccCchHHHHhhhcCCCCHHHHHHHHHHhhcCCcce-eeeeeccCCCCc-----cceeEeeeccceeee
Confidence 3446777877652 32 22477777777766555311 112334333322 2222223322
Q ss_pred -ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcC
Q 036068 85 -LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121 (178)
Q Consensus 85 -~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 121 (178)
+.....+.++-++-+-.-..|...||.+++..|++..
T Consensus 537 ~cknkr~gkQlASQ~ilq~lHPh~~twGSlLriYGr~s 574 (650)
T KOG4334|consen 537 ECKNKRQGKQLASQRILQKLHPHLLTWGSLLRIYGRLS 574 (650)
T ss_pred eeechhHHHHHHHHHHHHHhCHHhhhHHHHHHHhhhhh
Confidence 2344566777766555567899999999999999873
No 436
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=43.78 E-value=69 Score=18.98 Aligned_cols=43 Identities=14% Similarity=-0.075 Sum_probs=34.4
Q ss_pred HHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHH
Q 036068 58 TLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK 100 (178)
Q Consensus 58 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 100 (178)
++|+.-...|+..|...|.+++....-.=.++...++++.|-.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6788888888888888888888888777777777777777764
No 437
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=43.45 E-value=86 Score=19.97 Aligned_cols=58 Identities=10% Similarity=-0.050 Sum_probs=35.4
Q ss_pred ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc-HHHHHHHHHHhccccchhhHHHHHH
Q 036068 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD-EFTIVSILTARANLRALDLGEWIKT 96 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~ 96 (178)
|+.-....|.---.. ++..++|+.|.++||.-. +.-|......+-..|++.+|.++|+
T Consensus 65 D~RyLkiWi~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 65 DPRYLKIWLKYADNC---DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444444444333222 335667888887776544 3455566666777788888888775
No 438
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=42.58 E-value=2.3e+02 Score=24.67 Aligned_cols=29 Identities=21% Similarity=0.438 Sum_probs=19.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 036068 134 TTMIVGLAISGNGDKALDMFSQMLRASIKP 163 (178)
Q Consensus 134 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 163 (178)
..++.+.. .++...++.+++++.+.|..|
T Consensus 252 ~~lidAL~-~~D~a~al~~l~~Li~~G~dp 280 (824)
T PRK07764 252 DEAVDALA-AGDGAALFGTVDRVIEAGHDP 280 (824)
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHHHcCCCH
Confidence 34444444 577888888888888777654
No 439
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=42.02 E-value=52 Score=24.85 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=19.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc-CCCCChhHHH
Q 036068 135 TMIVGLAISGNGDKALDMFSQMLRA-SIKPDEVAYV 169 (178)
Q Consensus 135 ~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~t~~ 169 (178)
.|++.|.+.|.+++|+++..-..+- .-.|+...+.
T Consensus 111 ~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~ 146 (338)
T PF04124_consen 111 QLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVK 146 (338)
T ss_pred HHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHH
Confidence 4666777777777777766555432 2334444333
No 440
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=41.50 E-value=40 Score=18.53 Aligned_cols=20 Identities=20% Similarity=0.409 Sum_probs=15.7
Q ss_pred ChhHHHHHHHHhHhCCCCCc
Q 036068 52 RFREALTLFQEMQTSNIMGD 71 (178)
Q Consensus 52 ~~~~a~~~~~~m~~~~~~~~ 71 (178)
+++.|...|.+++..|-.|.
T Consensus 40 d~~~Al~~F~~lk~~~~IP~ 59 (63)
T smart00804 40 DYERALKNFTELKSEGSIPP 59 (63)
T ss_pred CHHHHHHHHHHHHhcCCCCh
Confidence 78999999999988664443
No 441
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=41.45 E-value=1.9e+02 Score=23.44 Aligned_cols=33 Identities=9% Similarity=0.225 Sum_probs=25.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 036068 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165 (178)
Q Consensus 132 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 165 (178)
..-.|+.+.. .|+.++|+.+++++...|..|..
T Consensus 260 ~if~L~~ai~-~~d~~~Al~~l~~L~~~g~~~~~ 292 (507)
T PRK06645 260 VIIEFVEYII-HRETEKAINLINKLYGSSVNLEI 292 (507)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHHH
Confidence 3344555544 59999999999999999987764
No 442
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=41.43 E-value=2e+02 Score=23.62 Aligned_cols=86 Identities=12% Similarity=0.087 Sum_probs=59.2
Q ss_pred ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID 115 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 115 (178)
|-...-+++..+..+-.+.-+..+-.+|+..| -+...|..++++|... ..++-..+|+++.+..+. ++..-.-|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44455567788888777888888888888876 4677888888888887 666777888888777654 4444445555
Q ss_pred HHHhcCChhhh
Q 036068 116 MYCICADVEKA 126 (178)
Q Consensus 116 ~~~~~~~~~~a 126 (178)
.|-+ ++.+.+
T Consensus 141 ~yEk-ik~sk~ 150 (711)
T COG1747 141 KYEK-IKKSKA 150 (711)
T ss_pred HHHH-hchhhH
Confidence 5554 444443
No 443
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=41.38 E-value=36 Score=21.58 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=20.9
Q ss_pred hcCChhHHHHHHHHhHhCCCCCcHHHHH
Q 036068 49 RVNRFREALTLFQEMQTSNIMGDEFTIV 76 (178)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 76 (178)
-.|+.+.|.++++.+...|+.|....|.
T Consensus 9 L~G~~~ra~riL~~L~~Eg~ep~~lLw~ 36 (125)
T PF14840_consen 9 LAGDAKRALRILQGLQAEGVEPPILLWA 36 (125)
T ss_dssp HTT-HHHHHHHHHHHHHTT--HHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCccHHHHHHH
Confidence 3588999999999999999988876553
No 444
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.33 E-value=2.1e+02 Score=23.94 Aligned_cols=97 Identities=16% Similarity=0.161 Sum_probs=62.1
Q ss_pred HHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHH
Q 036068 14 SRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEW 93 (178)
Q Consensus 14 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 93 (178)
+...+.|+++.|.++..+.. +..-|..|-++..+.++...|.++|.+-.. |..|+-.+...|+-+....
T Consensus 645 elal~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhhhhcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 44567889999988876544 567789999999999999999999887433 3445555555666555555
Q ss_pred HHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 94 IKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 94 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
+-+...+.|.. +.. ..+|...|++++..
T Consensus 714 la~~~~~~g~~-N~A-----F~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 714 LASLAKKQGKN-NLA-----FLAYFLSGDYEECL 741 (794)
T ss_pred HHHHHHhhccc-chH-----HHHHHHcCCHHHHH
Confidence 54555555532 222 22344455555554
No 445
>PF13934 ELYS: Nuclear pore complex assembly
Probab=41.22 E-value=1.3e+02 Score=21.33 Aligned_cols=134 Identities=13% Similarity=-0.012 Sum_probs=69.5
Q ss_pred CCcchhHHHHHHHHHHhcCChhH-----HHHHhccCCCC--------------ChhHHHHHHHHHhh--cCChhHHHHHH
Q 036068 2 KNKDVISWTAIVSRYINRGQVDI-----ARQCFDQMPER--------------DYVLWTAMIDGYLR--VNRFREALTLF 60 (178)
Q Consensus 2 ~~p~~~~~~~li~~~~~~~~~~~-----a~~~~~~m~~~--------------~~~~~~~li~~~~~--~~~~~~a~~~~ 60 (178)
|+++......+++.+...+--.. ..-++..+... =...|..++.++.- .+++++|.+.+
T Consensus 22 PP~s~~~L~~Ll~~i~~~~~~~~~K~~l~~YlLlD~~~~~~~~~~~~Fa~~f~ip~~~~~~~~g~W~LD~~~~~~A~~~L 101 (226)
T PF13934_consen 22 PPKSDNDLRALLDLILSSNVSLLKKHSLFYYLLLDLDDTRPSELAESFARAFGIPPKYIKFIQGFWLLDHGDFEEALELL 101 (226)
T ss_pred CccCHHHHHHHHHHHhcCCcCHHHhHHHHHHHHHhcCccccccHHHHHHHHhCCCHHHHHHHHHHHHhChHhHHHHHHHh
Confidence 77776667777777666543221 11122222211 11245566776664 35566665554
Q ss_pred HHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccc-hHHHHHHHHHHHhcCChhhhc------cch---
Q 036068 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKND-IFAGNALIDMYCICADVEKAQ------KDK--- 130 (178)
Q Consensus 61 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~------~~~--- 130 (178)
- .-.+.|+-. .-++.++...++.+.|..+++... +.++ ......++.. ..++.+.+|. ++.
T Consensus 102 ~---~ps~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~ 172 (226)
T PF13934_consen 102 S---HPSLIPWFP--DKILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRR 172 (226)
T ss_pred C---CCCCCcccH--HHHHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhH
Confidence 2 222333322 247777777788888777776542 2222 2223333333 5567777776 333
Q ss_pred hhHHHHHHHHHhcC
Q 036068 131 FSWTTMIVGLAISG 144 (178)
Q Consensus 131 ~~~~~li~~~~~~~ 144 (178)
..+..++..+....
T Consensus 173 ~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 173 RLFEQLLEHCLEEC 186 (226)
T ss_pred HHHHHHHHHHHHHh
Confidence 36777777666433
No 446
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=41.08 E-value=2e+02 Score=23.62 Aligned_cols=112 Identities=12% Similarity=0.190 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCCC--ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc-
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPER--DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN- 84 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~- 84 (178)
.+..|++. .+.-+.++..++++++... ....++.+++++...|-...+ .+..++...+-..+...-..++....-
T Consensus 348 ~f~~Lv~~-lr~l~~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~~av-~~i~~~I~~~~~~~~ea~~~l~~l~~~~ 425 (618)
T PF01347_consen 348 KFSRLVRL-LRTLSYEDLEELYKQLKSKSKKEQARKIFLDALPQAGTNPAV-KFIKDLIKSKKLTDDEAAQLLASLPFHV 425 (618)
T ss_dssp HHHHHHHH-HTTS-HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-SHHHH-HHHHHHHHTT-S-HHHHHHHHHHHHHT-
T ss_pred HHHHHHHH-HhcCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHcCCCCHHHHHHHHHHHHhhc
Confidence 35555554 4566778888888888776 788999999999999975544 455554444433343333333333222
Q ss_pred -ccchhhHHHHHHHHHHhCcccc-------hHHHHHHHHHHHhcC
Q 036068 85 -LRALDLGEWIKTYIDKNKVKND-------IFAGNALIDMYCICA 121 (178)
Q Consensus 85 -~~~~~~a~~~~~~m~~~~~~~~-------~~~~~~ll~~~~~~~ 121 (178)
.-..+-...+++.+.......+ ..++..++..+|...
T Consensus 426 ~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~ 470 (618)
T PF01347_consen 426 RRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNS 470 (618)
T ss_dssp ----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred CCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecc
Confidence 2222333333333332222222 345666677777663
No 447
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=40.90 E-value=1.3e+02 Score=21.39 Aligned_cols=30 Identities=10% Similarity=0.181 Sum_probs=15.6
Q ss_pred hhHHHHHhccCCC-----------CChhHHHHHHHHHhhcC
Q 036068 22 VDIARQCFDQMPE-----------RDYVLWTAMIDGYLRVN 51 (178)
Q Consensus 22 ~~~a~~~~~~m~~-----------~~~~~~~~li~~~~~~~ 51 (178)
.+.|..++..|.- .-..-|..+-.++.+.|
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g 177 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHG 177 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcC
Confidence 4555666666542 13444555555555554
No 448
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=40.68 E-value=83 Score=24.01 Aligned_cols=43 Identities=12% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhh
Q 036068 133 WTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175 (178)
Q Consensus 133 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~ 175 (178)
|-++.+.....|.++.++.+|++....|-.|=...=..|++.+
T Consensus 143 WIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 143 WICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
No 449
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=40.01 E-value=41 Score=19.81 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=27.5
Q ss_pred HHHHHhhcCChhHHHHHHHHhHh-CCCCCcHHHHHHHHHHhccccchhhH
Q 036068 43 MIDGYLRVNRFREALTLFQEMQT-SNIMGDEFTIVSILTARANLRALDLG 91 (178)
Q Consensus 43 li~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~~~~~~a 91 (178)
+.......|+.+.|..+++.+.+ .+ |+ -|..+++++.+.|.-..|
T Consensus 40 I~a~~~~~g~~~aa~~Ll~~L~~~r~--~~--wf~~Fl~AL~~~g~~~la 85 (88)
T cd08812 40 ILAEERNKGNIAAAEELLDRLERCDK--PG--WFQAFLDALRRTGNDDLA 85 (88)
T ss_pred HHHHHhccChHHHHHHHHHHHHHhcc--CC--cHHHHHHHHHHcCCccHH
Confidence 33333344788888888888876 32 33 455677777666654443
No 450
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=40.00 E-value=74 Score=21.97 Aligned_cols=68 Identities=10% Similarity=0.089 Sum_probs=40.6
Q ss_pred CCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCccc
Q 036068 33 PERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKN 105 (178)
Q Consensus 33 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 105 (178)
+...+.....++..|...|+.+...++.-.| .|+..-...+++.|.+.+-++.-.-++......-+.|
T Consensus 18 ~~lpp~v~k~lv~~y~~~~~~~~lE~lI~~L-----D~~~LDidq~i~lC~~~~LydalIYv~n~~l~DYvTP 85 (196)
T PF12816_consen 18 KSLPPEVFKALVEHYASKGRLERLEQLILHL-----DPSSLDIDQVIKLCKKHGLYDALIYVWNRALNDYVTP 85 (196)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHhC-----CHHhcCHHHHHHHHHHCCCCCeeeeeeeccccCCcHH
Confidence 3446677778888888888877777666554 2333334556666776666665544444443333333
No 451
>PF14518 Haem_oxygenas_2: Iron-containing redox enzyme; PDB: 3BJD_B.
Probab=39.81 E-value=16 Score=22.02 Aligned_cols=55 Identities=13% Similarity=0.006 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHH
Q 036068 37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIK 95 (178)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 95 (178)
....|.....+.......++.-.+-- .+. .....|..+++++.+.|-.+++...|
T Consensus 47 ~~~~n~~~~~~~~~~~~~~~lG~~~~-~E~---~~~~~~~~~~~~l~r~g~~~~~~~yf 101 (106)
T PF14518_consen 47 LALINLFLALCLHRSHYPEALGALLA-TES---SVPQIYRRLIKGLRRLGLDEEDLEYF 101 (106)
T ss_dssp HHHHHHHHHH--H-SSTHHHHHHHHH-HHT---HHHHHHHHHHHHHHHTT--TTTTHHH
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHH-Hhh---cChHHHHHHHHHHHHcCCCccccchh
Confidence 33444444444444555666555542 221 23445777888887777544454444
No 452
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=39.74 E-value=26 Score=24.88 Aligned_cols=20 Identities=30% Similarity=0.645 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHcCCCCChh
Q 036068 147 DKALDMFSQMLRASIKPDEV 166 (178)
Q Consensus 147 ~~a~~~~~~m~~~g~~p~~~ 166 (178)
..|+.+|+.+.+.|++|+..
T Consensus 67 ~~Al~i~~lL~~~Gv~ps~v 86 (269)
T COG3294 67 NSALAIYKLLLEKGVKPSGV 86 (269)
T ss_pred chHHHHHHHHHhcCCCcccc
Confidence 36899999999999999874
No 453
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=39.65 E-value=2.6e+02 Score=24.44 Aligned_cols=142 Identities=14% Similarity=0.044 Sum_probs=80.1
Q ss_pred hcCChhHHHHHhccCCC--------CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHH---HH--HHHhcc
Q 036068 18 NRGQVDIARQCFDQMPE--------RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIV---SI--LTARAN 84 (178)
Q Consensus 18 ~~~~~~~a~~~~~~m~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~---~l--l~~~~~ 84 (178)
..|+++++.++.+...+ ..+..+..+..+..-.|++++|....++-.+..-.-+...+. .+ ...+..
T Consensus 470 ~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~ 549 (894)
T COG2909 470 NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEA 549 (894)
T ss_pred hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 36777777766664432 366777888888888899999998887765542223333222 22 223455
Q ss_pred ccc--hhhHHHHHHHHHHh-----Cc-ccchHHHHHHHHHHHhcCChhhhc-----------c--chhhH--HHHHHHHH
Q 036068 85 LRA--LDLGEWIKTYIDKN-----KV-KNDIFAGNALIDMYCICADVEKAQ-----------K--DKFSW--TTMIVGLA 141 (178)
Q Consensus 85 ~~~--~~~a~~~~~~m~~~-----~~-~~~~~~~~~ll~~~~~~~~~~~a~-----------~--~~~~~--~~li~~~~ 141 (178)
.|. .++.+..+...... .. .+-..+...+..++.+....+... | -.... ..|+....
T Consensus 550 qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~ 629 (894)
T COG2909 550 QGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEF 629 (894)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHH
Confidence 663 22333333322211 11 223345556666666622211111 1 11111 25667778
Q ss_pred hcCChhHHHHHHHHHHHc
Q 036068 142 ISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 142 ~~~~~~~a~~~~~~m~~~ 159 (178)
..|+.++|....+++...
T Consensus 630 ~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 630 LRGDLDKALAQLDELERL 647 (894)
T ss_pred hcCCHHHHHHHHHHHHHH
Confidence 899999999999998864
No 454
>COG3682 Predicted transcriptional regulator [Transcription]
Probab=39.65 E-value=95 Score=19.77 Aligned_cols=36 Identities=6% Similarity=-0.147 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChh
Q 036068 88 LDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124 (178)
Q Consensus 88 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 124 (178)
...+.+++..+.+. .+++..|..++|.-+++.|-..
T Consensus 20 ~~t~~eI~~~l~~~-~ews~sTV~TLl~RL~KKg~l~ 55 (123)
T COG3682 20 PATVREIIEELPAD-REWSYSTVKTLLNRLVKKGLLT 55 (123)
T ss_pred CccHHHHHHHHhhc-ccccHHHHHHHHHHHHhccchh
Confidence 33445555555544 4555556666666666555444
No 455
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=39.59 E-value=81 Score=18.57 Aligned_cols=16 Identities=6% Similarity=-0.033 Sum_probs=7.0
Q ss_pred chhhHHHHHHHHHHhC
Q 036068 87 ALDLGEWIKTYIDKNK 102 (178)
Q Consensus 87 ~~~~a~~~~~~m~~~~ 102 (178)
..++|.++++.+..+|
T Consensus 43 ~~~qa~~Lld~L~trG 58 (86)
T cd08323 43 QKEKAVMLINMILTKD 58 (86)
T ss_pred hHHHHHHHHHHHHhcC
Confidence 3444444444444443
No 456
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=39.33 E-value=2.2e+02 Score=23.41 Aligned_cols=130 Identities=13% Similarity=0.128 Sum_probs=82.3
Q ss_pred HHHHhccCCCC---ChhHHHHH-HHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh--ccccchhhHHHHHHHH
Q 036068 25 ARQCFDQMPER---DYVLWTAM-IDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR--ANLRALDLGEWIKTYI 98 (178)
Q Consensus 25 a~~~~~~m~~~---~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~m 98 (178)
+..++.++... +-..|-.+ ++++.+.|+.+.|..++.++.. .+.+.....-.++.+- ....++..|.+.+...
T Consensus 47 s~~yl~qa~qs~~~~~~~~~llAa~al~~e~k~~qA~~Ll~ql~~-~Ltd~Q~~~~~LL~ael~la~~q~~~Al~~L~~~ 125 (604)
T COG3107 47 SQFYLQQAQQSSGEQQNDWLLLAARALVEEGKTAQAQALLNQLPQ-ELTDAQRAEKSLLAAELALAQKQPAAALQQLAKL 125 (604)
T ss_pred HHHHHHHHhhcCchhhhhHHHHHHHHHHHcCChHHHHHHHHhccc-cCCHHHHHHHHHHHHHHHHhccChHHHHHHHhhc
Confidence 33444444432 33345443 4678889999999999999876 6777777777777764 4556788899988887
Q ss_pred HHhCcccc--hHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHH
Q 036068 99 DKNKVKND--IFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQ 155 (178)
Q Consensus 99 ~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 155 (178)
.....++. ...|..-+...-..|+.=++.+-.....-++.+=.+..+.++-..++.+
T Consensus 126 ~~~~ls~~Qq~Ry~q~~a~a~ea~~~~~~a~rari~~~~lL~~k~~q~nid~tW~ll~~ 184 (604)
T COG3107 126 LPADLSQNQQARYYQARADALEARGDSIDAARARIAQDPLLSGKAKQANIDKTWQLLSE 184 (604)
T ss_pred chhhcCHHHHHHHHHHHHHHHhcccchHHHHHHHHHhhhhccchhHHHhHHHHHHHhhh
Confidence 76666655 3445566666666666555544344444444444455556666666553
No 457
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=39.26 E-value=1.2e+02 Score=20.59 Aligned_cols=74 Identities=3% Similarity=-0.174 Sum_probs=40.0
Q ss_pred ChhHHHHHHHHhHhCC--CCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhh
Q 036068 52 RFREALTLFQEMQTSN--IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK 125 (178)
Q Consensus 52 ~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 125 (178)
+...+-.++++..+.= -..+...|..+..+.....+.++....++.+.+.=++++..+...++..+.+....++
T Consensus 77 d~h~va~lLK~flreLP~PLi~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~ 152 (190)
T cd04400 77 DVHTVAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRALELKDLVSQLPQANYDLLYVLFSFLRKIIEHSD 152 (190)
T ss_pred CHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 4555555555544431 1123456666666554443444444455556655455666777777777776554443
No 458
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=39.24 E-value=1e+02 Score=19.71 Aligned_cols=50 Identities=10% Similarity=0.270 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCChhHHHHHhccCC-CCChhHHH-HHHHHHhhcCChhHHHHH
Q 036068 10 TAIVSRYINRGQVDIARQCFDQMP-ERDYVLWT-AMIDGYLRVNRFREALTL 59 (178)
Q Consensus 10 ~~li~~~~~~~~~~~a~~~~~~m~-~~~~~~~~-~li~~~~~~~~~~~a~~~ 59 (178)
-++..++.-.|..++|.++++..+ .++-...| .+++.|.++.+.++..++
T Consensus 70 EAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~ 121 (127)
T PF04034_consen 70 EALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEI 121 (127)
T ss_pred HHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 345555555666666666665554 12222222 355666665555454443
No 459
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=38.77 E-value=1.2e+02 Score=23.73 Aligned_cols=57 Identities=14% Similarity=0.200 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCC--C---------ChhHHHHHHHHHhhcCChhHHHHHHHHhH
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPE--R---------DYVLWTAMIDGYLRVNRFREALTLFQEMQ 64 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 64 (178)
+.-.|++.++--||+..|+++++.+.- + .+.+|-.+-=+|.-.+++.+|.+.|...+
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999997752 1 44455556667777889999999998863
No 460
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=38.00 E-value=90 Score=20.40 Aligned_cols=38 Identities=13% Similarity=0.110 Sum_probs=21.8
Q ss_pred HHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068 43 MIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80 (178)
Q Consensus 43 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 80 (178)
+|..+.+.+....+.++.+.+.+.|+..+..|..-.++
T Consensus 6 ~i~~Li~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~ 43 (146)
T TIGR01529 6 RIKEIITEEKISTQEELVALLKAEGIEVTQATVSRDLR 43 (146)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 34445555566666666666666666655555544443
No 461
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=37.76 E-value=1.6e+02 Score=21.57 Aligned_cols=96 Identities=6% Similarity=-0.114 Sum_probs=0.0
Q ss_pred C-CcchhHHHHHHHHHHhcCChhHHHHHhccCCC-CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHH
Q 036068 2 K-NKDVISWTAIVSRYINRGQVDIARQCFDQMPE-RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79 (178)
Q Consensus 2 ~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 79 (178)
| +.++..-..++....+.|+.+....+++.... ++......++.+++...+.+...++++.....+..++......+.
T Consensus 164 ~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~ 243 (324)
T PF11838_consen 164 ESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLA 243 (324)
T ss_dssp TSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHH
Q ss_pred HHh-ccccchhhHHHHHHH
Q 036068 80 TAR-ANLRALDLGEWIKTY 97 (178)
Q Consensus 80 ~~~-~~~~~~~~a~~~~~~ 97 (178)
... ....-.+.+.+.+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 244 GLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHH-CSTTCHHHHHHHHHH
T ss_pred HHhcCChhhHHHHHHHHHH
No 462
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=37.21 E-value=1.3e+02 Score=22.46 Aligned_cols=58 Identities=10% Similarity=-0.004 Sum_probs=37.9
Q ss_pred HHHhhcCChhHHHHHHHHhHhCCCCCcHHHHH--HHHHHhccccchhhHHHHHHHHHHhC
Q 036068 45 DGYLRVNRFREALTLFQEMQTSNIMGDEFTIV--SILTARANLRALDLGEWIKTYIDKNK 102 (178)
Q Consensus 45 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~ 102 (178)
..+...+.++.|+..+++-......|-...+. .+.+.|.+.|..+-|..++..+.+..
T Consensus 221 ~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~~ 280 (301)
T TIGR03362 221 RALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQI 280 (301)
T ss_pred HHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 44556677888888887633322234444444 34456788899999998888887654
No 463
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=36.60 E-value=55 Score=25.81 Aligned_cols=51 Identities=12% Similarity=0.085 Sum_probs=39.2
Q ss_pred HHHhhcCChhHHHHHHHHhHhCCCCCcH----HHHHHHHHHhccccchhhHHHHHH
Q 036068 45 DGYLRVNRFREALTLFQEMQTSNIMGDE----FTIVSILTARANLRALDLGEWIKT 96 (178)
Q Consensus 45 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~ 96 (178)
.-+|+.|+.....++|+...+.|.. |. .+|..+-++|.-.+++++|.++..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 4678999999999999998888743 44 455666677777888888888763
No 464
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=36.29 E-value=2.4e+02 Score=23.00 Aligned_cols=100 Identities=9% Similarity=-0.071 Sum_probs=53.7
Q ss_pred hhHHHHHhccCCCCChhHH-HHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccc--cchhhHHHHHHHH
Q 036068 22 VDIARQCFDQMPERDYVLW-TAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL--RALDLGEWIKTYI 98 (178)
Q Consensus 22 ~~~a~~~~~~m~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~m 98 (178)
.+.....+..+..++..++ +..++-+-+.|-.++|...+..+...- +|+...|.-+++.=... =++..+..+|+.+
T Consensus 444 ~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a 522 (568)
T KOG2396|consen 444 LDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRA 522 (568)
T ss_pred HHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHH
Confidence 3445555555556655554 345666666677777777777776652 45555665555532111 1155556666655
Q ss_pred HH-hCcccchHHHHHHHHHHHhcCChh
Q 036068 99 DK-NKVKNDIFAGNALIDMYCICADVE 124 (178)
Q Consensus 99 ~~-~~~~~~~~~~~~ll~~~~~~~~~~ 124 (178)
.. .| .++..|-..+..-...|..+
T Consensus 523 ~~~fg--~d~~lw~~y~~~e~~~g~~e 547 (568)
T KOG2396|consen 523 LREFG--ADSDLWMDYMKEELPLGRPE 547 (568)
T ss_pred HHHhC--CChHHHHHHHHhhccCCCcc
Confidence 53 33 45555555544433444433
No 465
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=36.20 E-value=30 Score=28.19 Aligned_cols=62 Identities=10% Similarity=0.137 Sum_probs=29.6
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCCC--ChhHHHHHHHHHhhcCChhHHHHHHHHhHh
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPER--DYVLWTAMIDGYLRVNRFREALTLFQEMQT 65 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 65 (178)
.+-..-.-++..|.+.|..+.+.++.+.+-.. ...-|..-+.-+.+.|+...+..+-+.+.+
T Consensus 403 ~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 403 DTNDDAEKLLEICAELGLEDVAREICKILGQRLLKEGRYGEALSWFIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp -SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444466778888888888888888776543 334566777777777777766666665554
No 466
>PRK07914 hypothetical protein; Reviewed
Probab=36.16 E-value=1.8e+02 Score=21.65 Aligned_cols=25 Identities=12% Similarity=0.056 Sum_probs=21.4
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCh
Q 036068 141 AISGNGDKALDMFSQMLRASIKPDE 165 (178)
Q Consensus 141 ~~~~~~~~a~~~~~~m~~~g~~p~~ 165 (178)
.-.|+..+|..+++++...|..|-.
T Consensus 206 i~~g~~~~A~~~l~~L~~~ge~p~~ 230 (320)
T PRK07914 206 AVAGDVAGAAEALRWAMMRGEPHVV 230 (320)
T ss_pred HHCCCHHHHHHHHHHHHHCCCchHH
Confidence 4589999999999999999987743
No 467
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.01 E-value=3e+02 Score=24.10 Aligned_cols=83 Identities=10% Similarity=-0.000 Sum_probs=40.7
Q ss_pred HHHHHHhccccch---hhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cchhhHHHHHHHHHh
Q 036068 76 VSILTARANLRAL---DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KDKFSWTTMIVGLAI 142 (178)
Q Consensus 76 ~~ll~~~~~~~~~---~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~~~~~~~li~~~~~ 142 (178)
..++.-+.+.+.. ..+...++.....-...++..+|.++..|++..+-+... ...+-.+..++.|.+
T Consensus 594 ~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~~le~~~~~~~~~~YDl~~alRlc~~ 673 (911)
T KOG2034|consen 594 PPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLLYLEIIKFMKSRVHYDLDYALRLCLK 673 (911)
T ss_pred HHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHHHHHHHhhccccceecHHHHHHHHHH
Confidence 3444444444322 233333333333333456788888888888765433322 122223445555655
Q ss_pred cCC------hhHHHHHHHHHHH
Q 036068 143 SGN------GDKALDMFSQMLR 158 (178)
Q Consensus 143 ~~~------~~~a~~~~~~m~~ 158 (178)
.+. ...+..+|.++.+
T Consensus 674 ~~~~ra~V~l~~~l~l~~~aVd 695 (911)
T KOG2034|consen 674 FKKTRACVFLLCMLNLFEDAVD 695 (911)
T ss_pred hCccceeeeHHHHHHHHHHHHH
Confidence 553 3344455555554
No 468
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=35.98 E-value=55 Score=15.58 Aligned_cols=13 Identities=15% Similarity=0.598 Sum_probs=6.1
Q ss_pred HhhcCChhHHHHH
Q 036068 47 YLRVNRFREALTL 59 (178)
Q Consensus 47 ~~~~~~~~~a~~~ 59 (178)
+-..|+.++|.++
T Consensus 11 ~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 11 FYQKGKYDEAIHF 23 (36)
T ss_dssp HHHTT-HHHHHHH
T ss_pred HHHHhhHHHHHHH
Confidence 3344555555555
No 469
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=35.88 E-value=1.4e+02 Score=20.94 Aligned_cols=62 Identities=19% Similarity=0.156 Sum_probs=36.5
Q ss_pred HHHHHhhcCC-------hhHHHHHHHHhHhCCCC----CcHHHHH-HHHHHhccccchhhHHHHHHHHHHhCcc
Q 036068 43 MIDGYLRVNR-------FREALTLFQEMQTSNIM----GDEFTIV-SILTARANLRALDLGEWIKTYIDKNKVK 104 (178)
Q Consensus 43 li~~~~~~~~-------~~~a~~~~~~m~~~~~~----~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 104 (178)
+-..|-..|+ ...|.+.|.+-.+..-. .+..+.. .+-....+.|++++|.+.|+.+...+-.
T Consensus 124 lAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 124 LAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 3344555555 34555566555443222 2223333 3344567899999999999999876543
No 470
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=35.84 E-value=1.8e+02 Score=25.83 Aligned_cols=75 Identities=7% Similarity=-0.132 Sum_probs=54.1
Q ss_pred HhhcCChhHHHHHHHHhHhCCCCCcHH-HHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcC
Q 036068 47 YLRVNRFREALTLFQEMQTSNIMGDEF-TIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121 (178)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 121 (178)
|.....+.++.++|..|...|+..... .|-..-..+.+.+.+.+|..+|+.=++..-.|-...-..+-....+.+
T Consensus 88 ~~~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~F~~r~~ 163 (974)
T KOG1166|consen 88 LELREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLRQYSNFQQRLM 163 (974)
T ss_pred HHHHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence 345667899999999999999877654 555666677888889999999988887777775544444433333333
No 471
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.80 E-value=2.3e+02 Score=22.72 Aligned_cols=24 Identities=8% Similarity=0.105 Sum_probs=13.8
Q ss_pred cCChhHHHHHHHHhHhCCCCCcHH
Q 036068 50 VNRFREALTLFQEMQTSNIMGDEF 73 (178)
Q Consensus 50 ~~~~~~a~~~~~~m~~~~~~~~~~ 73 (178)
.++.++|+.++.+|...|..|...
T Consensus 256 ~~d~~~Al~~l~~ll~~Gedp~~i 279 (472)
T PRK14962 256 NGDVKRVFTVLDDVYYSGKDYEVL 279 (472)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHH
Confidence 355666666666666665554443
No 472
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=35.69 E-value=46 Score=26.17 Aligned_cols=46 Identities=13% Similarity=0.180 Sum_probs=31.7
Q ss_pred HHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhc-------CChhHHHHH
Q 036068 14 SRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRV-------NRFREALTL 59 (178)
Q Consensus 14 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~-------~~~~~a~~~ 59 (178)
..+++.|+......+|+...+....-+.+|-..|++. +++++|++.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~y 77 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKY 77 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhh
Confidence 4578999999999999988776555555555555554 455666543
No 473
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=35.36 E-value=1.6e+02 Score=20.87 Aligned_cols=21 Identities=10% Similarity=-0.129 Sum_probs=10.0
Q ss_pred HhccccchhhHHHHHHHHHHh
Q 036068 81 ARANLRALDLGEWIKTYIDKN 101 (178)
Q Consensus 81 ~~~~~~~~~~a~~~~~~m~~~ 101 (178)
+|.+..++++|..=|+.+...
T Consensus 177 ayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHh
Confidence 344444455555555444443
No 474
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=35.19 E-value=98 Score=18.25 Aligned_cols=32 Identities=25% Similarity=0.328 Sum_probs=17.4
Q ss_pred ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCC
Q 036068 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSN 67 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 67 (178)
|...--.+-..+...|++++|++.+-++.+..
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 44444455556666667777766666665543
No 475
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=35.15 E-value=55 Score=15.32 Aligned_cols=23 Identities=13% Similarity=0.416 Sum_probs=18.5
Q ss_pred ChhHHHHHHHHHHHcCCCCChhHHH
Q 036068 145 NGDKALDMFSQMLRASIKPDEVAYV 169 (178)
Q Consensus 145 ~~~~a~~~~~~m~~~g~~p~~~t~~ 169 (178)
.++.|..+|++.... .|+..+|.
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~Wi 24 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWI 24 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHH
Confidence 578999999999874 68877764
No 476
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=34.96 E-value=4.1e+02 Score=26.32 Aligned_cols=84 Identities=5% Similarity=-0.080 Sum_probs=36.9
Q ss_pred HHHHHhcCChhHHHHHhcc----CCCC--ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcccc
Q 036068 13 VSRYINRGQVDIARQCFDQ----MPER--DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLR 86 (178)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~----m~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 86 (178)
..+-.+++.+..|...++. ..+. ...-|-.+...|+..+++|...-+...... .|+ ...-|.-....|
T Consensus 1390 a~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e~~g 1463 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHEASG 1463 (2382)
T ss_pred HHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHHhhc
Confidence 3344556666666666665 2221 222233344455555555554443332101 111 111222333445
Q ss_pred chhhHHHHHHHHHHhC
Q 036068 87 ALDLGEWIKTYIDKNK 102 (178)
Q Consensus 87 ~~~~a~~~~~~m~~~~ 102 (178)
+++.|...|+.+.+.+
T Consensus 1464 ~~~da~~Cye~~~q~~ 1479 (2382)
T KOG0890|consen 1464 NWADAAACYERLIQKD 1479 (2382)
T ss_pred cHHHHHHHHHHhhcCC
Confidence 5555555555555443
No 477
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=34.80 E-value=1.7e+02 Score=20.92 Aligned_cols=122 Identities=10% Similarity=-0.002 Sum_probs=59.3
Q ss_pred hhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 48 LRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 48 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
...|+++.|+++.+...++|... +..|..=.-+++ .++....-..-.+.|-+.++.....+...-......+.+
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~-Pd~f~R~~~t~v----aeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~v- 167 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTM-PDQFRRTLANFV----AEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEV- 167 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCC-CccccCCchHHH----HHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHH-
Confidence 45688999999999988887532 222211111111 011222222233445444444433333322212212211
Q ss_pred cchhhHHHHHHHH---------HhcCChhHHHHHHHHHHH----cCCCCChhHHHHHHhhhh
Q 036068 128 KDKFSWTTMIVGL---------AISGNGDKALDMFSQMLR----ASIKPDEVAYVGVLSACT 176 (178)
Q Consensus 128 ~~~~~~~~li~~~---------~~~~~~~~a~~~~~~m~~----~g~~p~~~t~~~li~a~~ 176 (178)
....|..+-..+ ...++...|+.++++... .||+-+..-....|++..
T Consensus 168 -rAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~l~~~lr~~~ 228 (230)
T PHA02537 168 -RAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKKDIERLERRLKALA 228 (230)
T ss_pred -HHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcc
Confidence 112222232333 234577899999998875 367766666666666543
No 478
>PF06368 Met_asp_mut_E: Methylaspartate mutase E chain (MutE); InterPro: IPR006396 Glutamate mutase (methylaspartate mutase) catalyses the reversible interconversion of L-glutamate and L-threo-3-methylaspartate, the first step in the pathway of glutamate fermentation []. Catalysis is initiated using the cobalamin cofactor. The E subunit is the catalytic subunit (MutE) []. ; GO: 0016866 intramolecular transferase activity, 0031419 cobalamin binding, 0019670 anaerobic glutamate catabolic process; PDB: 1CB7_D 1I9C_B 1CCW_D.
Probab=34.63 E-value=19 Score=28.02 Aligned_cols=48 Identities=13% Similarity=0.025 Sum_probs=29.6
Q ss_pred cCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHH
Q 036068 50 VNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK 100 (178)
Q Consensus 50 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 100 (178)
.+.+++..++++.+.+.| .+|..+ +-|++|.|.+++++|...+++=.+
T Consensus 28 v~~~~~~i~lL~~l~~~g-~~d~lp--~TiDSyTR~n~y~~A~~~l~~s~~ 75 (441)
T PF06368_consen 28 VALPEEMIELLQYLRDEG-GADVLP--LTIDSYTRQNDYEEAERGLEESIE 75 (441)
T ss_dssp -SSHHHHHHHHHHHHHTT---SSEE--EEB-HHHHTT-HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcc-CCCeec--eeeecccccccHHHHHHHHHhchh
Confidence 356777788888877764 233322 246778888888888888765555
No 479
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.63 E-value=2.5e+02 Score=22.77 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=24.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 036068 132 SWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 164 (178)
Q Consensus 132 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 164 (178)
....++.++ ..+++++|+.++++|...|..|.
T Consensus 244 ~if~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 244 RLRGIAAAL-AQGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 344555555 56999999999999999986654
No 480
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=34.61 E-value=2.7e+02 Score=24.67 Aligned_cols=97 Identities=12% Similarity=0.100 Sum_probs=0.0
Q ss_pred CCcchhHHHHHHHHHHhcC--ChhHHHHHhccCCCCChhHHHHHHHHHhhcCC----hhHHHHHHHH----hHhCCCCCc
Q 036068 2 KNKDVISWTAIVSRYINRG--QVDIARQCFDQMPERDYVLWTAMIDGYLRVNR----FREALTLFQE----MQTSNIMGD 71 (178)
Q Consensus 2 ~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~----~~~a~~~~~~----m~~~~~~~~ 71 (178)
+.-...-...+|.+|++.+ ++++|+.++.++++.+...-...+...+-.-+ ++.|+-.|+- |....-.-|
T Consensus 808 ~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~alkyl~fLvDvn~Ly~~ALG~YDl~Lal~VAq~SQkD 887 (928)
T PF04762_consen 808 PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEALKYLCFLVDVNKLYDVALGTYDLELALMVAQQSQKD 887 (928)
T ss_pred cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHHHhHheeeccHHHHHHHHhhhcCHHHHHHHHHHhccC
Q ss_pred HHHHHHHHHHhccc-------------cchhhHHHHHHHH
Q 036068 72 EFTIVSILTARANL-------------RALDLGEWIKTYI 98 (178)
Q Consensus 72 ~~~~~~ll~~~~~~-------------~~~~~a~~~~~~m 98 (178)
+.=|..+|+-+-+. +++++|.+-+..+
T Consensus 888 PKEYLPfL~~L~~l~~~~rry~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 888 PKEYLPFLQELQKLPPLYRRYKIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred hHHHHHHHHHHHhCChhheeeeHhhhhCCHHHHHHHHHhh
No 481
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.11 E-value=1.9e+02 Score=21.24 Aligned_cols=165 Identities=9% Similarity=0.052 Sum_probs=82.9
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCC---CChhH------HHHHHHHHhhcCChhHHHHHHHHh----HhCCCCCcHHHH
Q 036068 9 WTAIVSRYINRGQVDIARQCFDQMPE---RDYVL------WTAMIDGYLRVNRFREALTLFQEM----QTSNIMGDEFTI 75 (178)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~------~~~li~~~~~~~~~~~a~~~~~~m----~~~~~~~~~~~~ 75 (178)
|-.-..+|-...++++|..-+.+..+ .|... |....-..-+...+.++..++++- .+.| .|+...-
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-spdtAAm 112 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-SPDTAAM 112 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CcchHHH
Confidence 55556667777777777766655431 12222 222222222333455555555552 2334 4443321
Q ss_pred HHHHHH--hccccchhhHHHHHHHHHHh---C--cccchHHHHHHHHHHHhcCChhhhc----------------cc-hh
Q 036068 76 VSILTA--RANLRALDLGEWIKTYIDKN---K--VKNDIFAGNALIDMYCICADVEKAQ----------------KD-KF 131 (178)
Q Consensus 76 ~~ll~~--~~~~~~~~~a~~~~~~m~~~---~--~~~~~~~~~~ll~~~~~~~~~~~a~----------------~~-~~ 131 (178)
++=++ ..+..++++|.++|++-..- + -.--...+..+-..+.+...+++|. ++ -.
T Consensus 113 -aleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k 191 (308)
T KOG1585|consen 113 -ALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCK 191 (308)
T ss_pred -HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHH
Confidence 12121 23445677777777654321 1 0111233445555566666666654 11 12
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcC---CCCChhHHHHHHhhh
Q 036068 132 SWTTMIVGLAISGNGDKALDMFSQMLRAS---IKPDEVAYVGVLSAC 175 (178)
Q Consensus 132 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~t~~~li~a~ 175 (178)
.|-..|..+....++..|...+++--..+ -.-+..+...||.+|
T Consensus 192 ~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay 238 (308)
T KOG1585|consen 192 AYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY 238 (308)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence 24455566666778888888887744321 123456666677666
No 482
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=33.40 E-value=1.5e+02 Score=19.94 Aligned_cols=71 Identities=7% Similarity=-0.004 Sum_probs=42.8
Q ss_pred ChhHHHHHHHHhHhCC----CCCcH---HHHHHHHHHhccccchhhHHHHHHHHHH-hCcccchHHHHHHHHHHHhcCCh
Q 036068 52 RFREALTLFQEMQTSN----IMGDE---FTIVSILTARANLRALDLGEWIKTYIDK-NKVKNDIFAGNALIDMYCICADV 123 (178)
Q Consensus 52 ~~~~a~~~~~~m~~~~----~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~~~~ 123 (178)
+-++|..+|..+.+.. ..++. ......+..+.+.. --++++.+.+ .|+.+.......++..+.+.-..
T Consensus 108 ~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~----~p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~ 183 (199)
T smart00164 108 DEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEY----DPDLYKHLKDKLGIDPSLYALRWFLTLFARELPL 183 (199)
T ss_pred CHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHH----CHHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCH
Confidence 4567777777765432 22332 22333333333333 3467777775 88888888888888888876555
Q ss_pred hhh
Q 036068 124 EKA 126 (178)
Q Consensus 124 ~~a 126 (178)
+.+
T Consensus 184 ~~~ 186 (199)
T smart00164 184 EIV 186 (199)
T ss_pred HHH
Confidence 543
No 483
>TIGR02878 spore_ypjB sporulation protein YpjB. Members of this protein, YpjB, family are restricted to a subset of endospore-forming bacteria, including Bacillus species but not CLostridium or some others. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon, where sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect. This protein family is not, however, a part of the endospore formation minimal gene set.
Probab=33.15 E-value=1.8e+02 Score=20.78 Aligned_cols=15 Identities=20% Similarity=0.368 Sum_probs=7.2
Q ss_pred hhcCChhHHHHHHHH
Q 036068 48 LRVNRFREALTLFQE 62 (178)
Q Consensus 48 ~~~~~~~~a~~~~~~ 62 (178)
.+.|++++|.+++..
T Consensus 16 ~K~~~yeeAkqvL~y 30 (233)
T TIGR02878 16 TKQARYEEAKQVLEY 30 (233)
T ss_pred HHhhhHHHHHHHHHH
Confidence 344455555544444
No 484
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=32.70 E-value=85 Score=21.69 Aligned_cols=73 Identities=10% Similarity=0.114 Sum_probs=48.2
Q ss_pred CcchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHH
Q 036068 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIV 76 (178)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 76 (178)
...+.+...++..|...|+.+.++++.-.+.-.... .+.++..|-+.|.++.-.-+|.+....=+.|=...+.
T Consensus 19 ~lpp~v~k~lv~~y~~~~~~~~lE~lI~~LD~~~LD-idq~i~lC~~~~LydalIYv~n~~l~DYvTPL~~ll~ 91 (196)
T PF12816_consen 19 SLPPEVFKALVEHYASKGRLERLEQLILHLDPSSLD-IDQVIKLCKKHGLYDALIYVWNRALNDYVTPLEELLE 91 (196)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHhcC-HHHHHHHHHHCCCCCeeeeeeeccccCCcHHHHHHHH
Confidence 445677889999999999999999999888643222 2456666777776666655555544443444333333
No 485
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=32.64 E-value=5.1e+02 Score=25.78 Aligned_cols=118 Identities=9% Similarity=0.060 Sum_probs=69.0
Q ss_pred HHHHhcCChhHHHHHhcc-CCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHH
Q 036068 14 SRYINRGQVDIARQCFDQ-MPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGE 92 (178)
Q Consensus 14 ~~~~~~~~~~~a~~~~~~-m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 92 (178)
..|+.-+++|.+.-+... ...| ..+ --|-.....|++..|..+|+++...+ ++...+++-+++.--..+.++.+.
T Consensus 1428 ~lY~~i~dpDgV~Gv~~~r~a~~--sl~-~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i 1503 (2382)
T KOG0890|consen 1428 NLYGSIHDPDGVEGVSARRFADP--SLY-QQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEI 1503 (2382)
T ss_pred HHHHhcCCcchhhhHHHHhhcCc--cHH-HHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHH
Confidence 366666666665555552 2222 222 23444567789999999999998875 334667777777777777777766
Q ss_pred HHHHHHHHhCcccchHHHHH-HHHHHHhcCChhhhc-----cchhhHHHH
Q 036068 93 WIKTYIDKNKVKNDIFAGNA-LIDMYCICADVEKAQ-----KDKFSWTTM 136 (178)
Q Consensus 93 ~~~~~m~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~-----~~~~~~~~l 136 (178)
-..+.......+ ....++. =+.+-=+.++++... .+..+|.+.
T Consensus 1504 ~~~dg~~~~~se-~~~~~~s~~~eaaW~l~qwD~~e~~l~~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1504 LHLDGLIINRSE-EVDELNSLGVEAAWRLSQWDLLESYLSDRNIEYWSVE 1552 (2382)
T ss_pred hhhcchhhccCH-HHHHHHHHHHHHHhhhcchhhhhhhhhcccccchhHH
Confidence 665555544322 2223332 244445556665544 345556555
No 486
>PRK09462 fur ferric uptake regulator; Provisional
Probab=32.33 E-value=1.4e+02 Score=19.29 Aligned_cols=51 Identities=10% Similarity=0.041 Sum_probs=33.7
Q ss_pred hHHHHHHHHHhhc-CChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccch
Q 036068 38 VLWTAMIDGYLRV-NRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88 (178)
Q Consensus 38 ~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 88 (178)
..-..++..+... +..-.|.++++++.+.+...+..|.--.|+.+.+.|-.
T Consensus 17 ~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 17 LPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3344555666554 45677888888888887666777766666666666544
No 487
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=31.98 E-value=2.2e+02 Score=21.35 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=20.3
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCC
Q 036068 141 AISGNGDKALDMFSQMLRASIKPD 164 (178)
Q Consensus 141 ~~~~~~~~a~~~~~~m~~~g~~p~ 164 (178)
.-.|+..+|..+++++...|..|-
T Consensus 222 i~~~~~~~a~~~l~~ll~~g~~p~ 245 (343)
T PRK06585 222 ALAGDLAAFERALDRALAEGTAPV 245 (343)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCHH
Confidence 447899999999999999888774
No 488
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=31.93 E-value=3e+02 Score=22.92 Aligned_cols=146 Identities=9% Similarity=0.026 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChhHHHHHhcc--CCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh---ccc
Q 036068 11 AIVSRYINRGQVDIARQCFDQ--MPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR---ANL 85 (178)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~--m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~---~~~ 85 (178)
.....+.-.|+++.|.+++-+ .-..+.+++.+.+..|.-.+-.+....-+-.....+..| ..+..+|..| .+.
T Consensus 263 ~Yf~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~--ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 263 LYFQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPP--LNFARLIGQYTRSFEI 340 (613)
T ss_dssp -HHHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT--------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCC--cCHHHHHHHHHHHHhc
Q ss_pred cchhhHHHHHHHHHHhCcccchHHHHHHHHH-HHhcCChhhhc-------------------------------------
Q 036068 86 RALDLGEWIKTYIDKNKVKNDIFAGNALIDM-YCICADVEKAQ------------------------------------- 127 (178)
Q Consensus 86 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~------------------------------------- 127 (178)
.++.+|.+++-.+....-+.....+...+.- ....++++...
T Consensus 341 td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~ 420 (613)
T PF04097_consen 341 TDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQA 420 (613)
T ss_dssp T-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHH
Q ss_pred ----cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 128 ----KDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 128 ----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
.+.--+.--|..|--.|++++|++++.+.+.
T Consensus 421 A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~Ls 455 (613)
T PF04097_consen 421 AREAEERGRFEDAILLYHLAEEYDKVLSLLNRLLS 455 (613)
T ss_dssp HHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHH
No 489
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=31.74 E-value=1.5e+02 Score=19.25 Aligned_cols=29 Identities=3% Similarity=-0.050 Sum_probs=13.8
Q ss_pred chhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 036068 129 DKFSWTTMIVGLAISGNGDKALDMFSQML 157 (178)
Q Consensus 129 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 157 (178)
+...-..-+++|-+.+|+-.|.++|+-++
T Consensus 83 ~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 83 SPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred ChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33334444445555555555555555444
No 490
>TIGR03236 dnd_assoc_1 dnd system-associated protein 1. A DNA sulfur modification system, dnd (degradation during electrophoresis), is sparsely and sporadically distributed among the bacteria. Members of this protein family are strictly limited to species with the dnd operon, and are found close to the dnd operon on the chromosomes of Bacillus cereus E33L, Hahella chejuensis KCTC 2396, and Pseudoalteromonas haloplanktis TAC12.
Probab=31.57 E-value=2.1e+02 Score=22.11 Aligned_cols=45 Identities=18% Similarity=0.101 Sum_probs=36.1
Q ss_pred hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhh
Q 036068 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126 (178)
Q Consensus 82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 126 (178)
|+...+-=.-.+++.+..++|+--|..+=..+|..|-|.|.+++.
T Consensus 306 ~Vg~~~Kl~l~~L~~eFekRGvffD~~SkqeiI~fyEkin~lEKk 350 (363)
T TIGR03236 306 AVGEREKLPLNRLIEEFSKRGVAFDRQSQQMLIEFYERHGNLERM 350 (363)
T ss_pred HhCCcccchHHHHHHHHHhcCceeCchhHHHHHHHHHHhCccccc
Confidence 333334445678899999999999999999999999999988864
No 491
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=31.38 E-value=1.1e+02 Score=18.27 Aligned_cols=47 Identities=19% Similarity=0.202 Sum_probs=21.0
Q ss_pred HHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHH
Q 036068 46 GYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWI 94 (178)
Q Consensus 46 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 94 (178)
-|-+.|..+.+.+.+.+-....- ...|...|+.++...+.-.-|+.+
T Consensus 41 ~y~r~gL~EqvyQ~L~~W~~~eg--~~Atv~~Lv~AL~~c~l~~lAe~l 87 (90)
T cd08780 41 EYDREGLYEQAYQLLRRFIQSEG--KKATLQRLVQALEENGLTSLAEDL 87 (90)
T ss_pred hcccccHHHHHHHHHHHHHHhcc--ccchHHHHHHHHHHccchHHHHHH
Confidence 34444555555555555433211 114444555555444444444443
No 492
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=31.37 E-value=2.3e+02 Score=21.36 Aligned_cols=51 Identities=12% Similarity=-0.015 Sum_probs=38.0
Q ss_pred HHHHHhccccchhhHHHHHHHHHHhCcccchHH-------HHHHHHHHHhcCChhhhc
Q 036068 77 SILTARANLRALDLGEWIKTYIDKNKVKNDIFA-------GNALIDMYCICADVEKAQ 127 (178)
Q Consensus 77 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-------~~~ll~~~~~~~~~~~a~ 127 (178)
-+.+-..+.+++++|+..+.++...|...+..+ ...+-..|...|+....-
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~ 65 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLG 65 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHH
Confidence 345566788899999999999998887666544 445667788888777654
No 493
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=31.04 E-value=1.2e+02 Score=17.91 Aligned_cols=52 Identities=10% Similarity=0.077 Sum_probs=26.4
Q ss_pred HHHHHHhHhCCCCCcHHHHHHHHHHhcccc---chhhHHHHHHHHHHhCcccchHHHHH
Q 036068 57 LTLFQEMQTSNIMGDEFTIVSILTARANLR---ALDLGEWIKTYIDKNKVKNDIFAGNA 112 (178)
Q Consensus 57 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ 112 (178)
.++++.+.+.|+- +..-...+. ++.. +.++|..+++.+..+|..--+..+++
T Consensus 19 ~~l~d~L~q~~VL-t~~d~EeI~---~~~t~~~r~~ka~~LLdiL~~rG~~Af~~F~~a 73 (86)
T cd08785 19 SRLTPYLRQCKVL-DEQDEEEVL---SSPRLPIRANRTGRLLDILATRGKRGYVAFLES 73 (86)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHh---CCCccccHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 3466666666643 333322222 2333 33677777777777665543333333
No 494
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=31.02 E-value=1.3e+02 Score=23.01 Aligned_cols=35 Identities=9% Similarity=-0.129 Sum_probs=15.3
Q ss_pred hccccchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116 (178)
Q Consensus 82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 116 (178)
+.+.|-+..|.++.+.+..-.+.-|+.-.-.+|+.
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~ 147 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDY 147 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHH
Confidence 34444444444444444444433344333333443
No 495
>PF07864 DUF1651: Protein of unknown function (DUF1651); InterPro: IPR012447 The proteins in this entry have not been characterised.
Probab=30.55 E-value=51 Score=18.66 Aligned_cols=21 Identities=10% Similarity=0.316 Sum_probs=17.6
Q ss_pred ChhHHHHHHHHHHHcCCCCCh
Q 036068 145 NGDKALDMFSQMLRASIKPDE 165 (178)
Q Consensus 145 ~~~~a~~~~~~m~~~g~~p~~ 165 (178)
..+.|.+.+++|++.|..+..
T Consensus 51 ~~~~A~e~W~~L~~~GW~~~~ 71 (75)
T PF07864_consen 51 TREEARELWKELQKTGWRRCE 71 (75)
T ss_pred EHHHHHHHHHHHHHcCCEECC
Confidence 468999999999999987654
No 496
>PF02840 Prp18: Prp18 domain; InterPro: IPR004098 The splicing factor Prp18 is required for the second step of pre-mRNA splicing. PRP18 appears to be primarily associated with the U5 snRNP. The structure of a large fragment of the Saccharomyces cerevisiae Prp18 is known []. This fragment is fully active in yeast splicing in vitro and includes the sequences of Prp18 that have been evolutionarily conserved. The core structure consists of five alpha-helices that adopt a novel fold. The most highly conserved region of Prp18, a nearly invariant stretch of 19 aa, forms part of a loop between two alpha-helices and may interact with the U5 small nuclear ribonucleoprotein particles [].; GO: 0008380 RNA splicing, 0005681 spliceosomal complex; PDB: 1DVK_A.
Probab=30.10 E-value=1.4e+02 Score=19.65 Aligned_cols=47 Identities=9% Similarity=0.076 Sum_probs=32.1
Q ss_pred HHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhC
Q 036068 56 ALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK 102 (178)
Q Consensus 56 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 102 (178)
-.-+|..++...+.++...-..-|--+++.+++.+|.+.|=.|.-.+
T Consensus 43 l~PL~~~Lk~~~l~~dil~~L~~Iv~~~q~r~y~~And~Yl~LsIGn 89 (144)
T PF02840_consen 43 LKPLFKKLKKRTLPEDILDSLATIVYHLQQREYVKANDAYLKLSIGN 89 (144)
T ss_dssp HHHHHHHHHCT-S-HHHHHHHHHHHHHHCCCGHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC
Confidence 35567777777777776655555555677899999999887776443
No 497
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=30.01 E-value=2.5e+02 Score=21.39 Aligned_cols=66 Identities=14% Similarity=0.108 Sum_probs=43.7
Q ss_pred HHHHHHHHhhcCC---hhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccc
Q 036068 40 WTAMIDGYLRVNR---FREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKND 106 (178)
Q Consensus 40 ~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 106 (178)
-..++..+.+.++ +-+|..+++...... +-+...=..+++.|...|-.+.|.+.|..+.-..+..|
T Consensus 183 ~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~D 251 (365)
T PF09797_consen 183 AHSLLDLYSKTKDSEYLLQAIALLEHALKKS-PHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLD 251 (365)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHH
Confidence 3445555555554 445666666665553 44556666788899999999999999987765544433
No 498
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.90 E-value=1.3e+02 Score=24.76 Aligned_cols=77 Identities=12% Similarity=-0.020 Sum_probs=42.4
Q ss_pred HHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHH
Q 036068 59 LFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIV 138 (178)
Q Consensus 59 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~ 138 (178)
+++.+--.|+.|+..||++ ..+++..++...|++.|--.-..|=.--|..--. .=+.
T Consensus 255 IleDl~~LgIkpd~~TyTS--------DyF~~i~dycv~likeGKAYvDDTp~E~Mr~ER~---------------~gv~ 311 (712)
T KOG1147|consen 255 ILEDLSLLGIKPDRVTYTS--------DYFDEIMDYCVKLIKEGKAYVDDTPTEQMRDERE---------------QGVE 311 (712)
T ss_pred HHHHHHHhCcCcceeeech--------hhHHHHHHHHHHHHhcCcccccCCcHHHHHHHHh---------------cccc
Confidence 4455566788888888753 4456666666666665521100000011110000 1123
Q ss_pred HHHhcCChhHHHHHHHHHHH
Q 036068 139 GLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 139 ~~~~~~~~~~a~~~~~~m~~ 158 (178)
.-++....|+-+++|++|.+
T Consensus 312 Sk~R~~~vEenl~iw~EM~k 331 (712)
T KOG1147|consen 312 SKCRSNSVEENLRIWEEMKK 331 (712)
T ss_pred ccccCCCHHHHHHHHHHHhc
Confidence 34778889999999999986
No 499
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=29.87 E-value=17 Score=19.46 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=23.7
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhHHHHHHhhh
Q 036068 143 SGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175 (178)
Q Consensus 143 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~ 175 (178)
.|-.++...+|++|-.++..|....|+-.+.-|
T Consensus 5 igy~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy 37 (55)
T PF07443_consen 5 IGYHEELIAVFKQMPSRNYDPKTRKWNFSLEDY 37 (55)
T ss_pred ccCCHHHHHHHHcCcccccCccceeeeeeHHHH
Confidence 366678889999998888777776665554433
No 500
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=29.70 E-value=1.3e+02 Score=19.60 Aligned_cols=39 Identities=3% Similarity=-0.068 Sum_probs=28.3
Q ss_pred HHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068 78 ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116 (178)
Q Consensus 78 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 116 (178)
+|..+.+.+....+.++++.+.+.|+..+..|..-.+.-
T Consensus 6 ~i~~Li~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~e 44 (146)
T TIGR01529 6 RIKEIITEEKISTQEELVALLKAEGIEVTQATVSRDLRE 44 (146)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 455566777777888888888888888877776665443
Done!