Query 036068
Match_columns 178
No_of_seqs 168 out of 1454
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 15:20:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036068.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036068hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 2.3E-37 7.9E-42 237.4 18.0 171 7-177 27-222 (501)
2 4g26_A Pentatricopeptide repea 100.0 7.3E-32 2.5E-36 206.9 16.3 154 25-178 9-188 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 1.5E-24 5.1E-29 173.8 8.7 138 7-144 128-286 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.9 3.6E-24 1.2E-28 171.6 10.1 118 37-177 127-248 (1134)
5 2xpi_A Anaphase-promoting comp 99.8 1.2E-17 4E-22 130.0 16.5 172 4-177 303-528 (597)
6 2xpi_A Anaphase-promoting comp 99.8 2.4E-17 8.1E-22 128.3 17.6 170 4-176 371-561 (597)
7 2vq2_A PILW, putative fimbrial 99.5 4.1E-12 1.4E-16 86.6 17.0 156 3-159 5-176 (225)
8 2pl2_A Hypothetical conserved 99.5 5.2E-12 1.8E-16 86.8 17.3 169 1-174 1-194 (217)
9 1w3b_A UDP-N-acetylglucosamine 99.5 3.8E-12 1.3E-16 94.2 17.8 120 37-158 237-367 (388)
10 2ho1_A Type 4 fimbrial biogene 99.5 7E-12 2.4E-16 87.3 18.0 152 6-158 37-203 (252)
11 2y4t_A DNAJ homolog subfamily 99.5 2.1E-12 7.2E-17 97.1 15.6 153 5-158 25-239 (450)
12 2y4t_A DNAJ homolog subfamily 99.5 7.2E-12 2.5E-16 94.2 18.1 121 5-127 93-231 (450)
13 3as5_A MAMA; tetratricopeptide 99.5 1.8E-11 6.1E-16 80.8 18.1 152 6-159 8-173 (186)
14 1w3b_A UDP-N-acetylglucosamine 99.5 1E-11 3.5E-16 91.9 18.4 85 73-158 238-333 (388)
15 1b89_A Protein (clathrin heavy 99.5 3.5E-14 1.2E-18 106.3 4.2 155 6-177 32-189 (449)
16 4eqf_A PEX5-related protein; a 99.5 6.6E-12 2.3E-16 92.1 16.1 167 6-175 65-291 (365)
17 3vtx_A MAMA; tetratricopeptide 99.4 1.2E-11 4.3E-16 82.3 15.9 160 5-168 4-177 (184)
18 2ho1_A Type 4 fimbrial biogene 99.4 6.6E-12 2.2E-16 87.4 15.1 167 4-173 69-250 (252)
19 2q7f_A YRRB protein; TPR, prot 99.4 2.4E-11 8.3E-16 83.9 17.5 158 4-165 55-226 (243)
20 3mkr_A Coatomer subunit epsilo 99.4 7E-11 2.4E-15 84.8 19.5 154 5-165 100-268 (291)
21 3mkr_A Coatomer subunit epsilo 99.4 1.6E-11 5.5E-16 88.1 16.1 164 3-174 62-243 (291)
22 2vq2_A PILW, putative fimbrial 99.4 5.9E-11 2E-15 80.8 18.1 167 4-173 40-223 (225)
23 2q7f_A YRRB protein; TPR, prot 99.4 1.1E-11 3.7E-16 85.6 13.1 170 3-175 20-203 (243)
24 1fch_A Peroxisomal targeting s 99.4 7.4E-11 2.5E-15 86.3 17.7 169 5-175 63-295 (368)
25 1b89_A Protein (clathrin heavy 99.4 6.6E-12 2.3E-16 94.1 12.1 136 5-158 93-235 (449)
26 4eqf_A PEX5-related protein; a 99.4 2E-11 7E-16 89.5 14.0 155 4-159 97-310 (365)
27 3hym_B Cell division cycle pro 99.4 7.5E-11 2.6E-15 84.8 16.1 152 6-158 125-298 (330)
28 1fch_A Peroxisomal targeting s 99.4 9.3E-11 3.2E-15 85.8 16.9 156 3-159 95-314 (368)
29 2pl2_A Hypothetical conserved 99.3 3E-11 1E-15 83.0 12.1 152 3-157 36-212 (217)
30 3hym_B Cell division cycle pro 99.3 2.5E-10 8.6E-15 82.0 17.4 153 5-159 89-265 (330)
31 3uq3_A Heat shock protein STI1 99.3 1.3E-10 4.5E-15 80.7 15.2 153 5-158 37-235 (258)
32 3uq3_A Heat shock protein STI1 99.3 1.7E-10 5.7E-15 80.1 15.2 170 5-175 4-217 (258)
33 4gyw_A UDP-N-acetylglucosamine 99.3 1.4E-10 4.7E-15 92.8 15.6 153 4-158 7-173 (723)
34 3cv0_A Peroxisome targeting si 99.3 5.3E-10 1.8E-14 80.2 17.2 153 5-158 54-268 (327)
35 3cv0_A Peroxisome targeting si 99.3 6.6E-10 2.3E-14 79.7 16.9 169 5-175 20-250 (327)
36 3ieg_A DNAJ homolog subfamily 99.3 6.4E-10 2.2E-14 80.6 16.3 150 6-158 37-216 (359)
37 1xnf_A Lipoprotein NLPI; TPR, 99.2 4.2E-10 1.4E-14 79.0 14.3 152 5-159 42-244 (275)
38 2fo7_A Synthetic consensus TPR 99.2 8.5E-10 2.9E-14 68.7 13.5 128 7-159 2-132 (136)
39 3ieg_A DNAJ homolog subfamily 99.2 9.8E-10 3.4E-14 79.6 15.7 169 5-175 2-198 (359)
40 2gw1_A Mitochondrial precursor 99.2 1.1E-09 3.7E-14 83.4 16.0 151 6-158 270-443 (514)
41 4abn_A Tetratricopeptide repea 99.2 5.7E-10 2E-14 85.2 14.2 154 3-159 99-287 (474)
42 2gw1_A Mitochondrial precursor 99.2 1E-09 3.5E-14 83.5 15.2 162 3-167 301-484 (514)
43 4i17_A Hypothetical protein; T 99.2 2.6E-09 8.7E-14 73.4 15.9 165 4-172 5-220 (228)
44 3nf1_A KLC 1, kinesin light ch 99.1 1.1E-09 3.9E-14 77.9 13.1 155 4-158 25-223 (311)
45 3fp2_A TPR repeat-containing p 99.1 2.2E-09 7.6E-14 82.2 15.4 151 7-159 244-407 (537)
46 3u4t_A TPR repeat-containing p 99.1 8.5E-09 2.9E-13 72.3 17.2 153 6-159 3-171 (272)
47 1ouv_A Conserved hypothetical 99.1 1.6E-08 5.6E-13 71.2 18.3 149 5-159 5-179 (273)
48 3edt_B KLC 2, kinesin light ch 99.1 9.9E-10 3.4E-14 77.0 11.3 154 5-158 42-280 (283)
49 2h6f_A Protein farnesyltransfe 99.1 8.9E-09 3E-13 76.6 16.0 148 7-156 132-302 (382)
50 1xnf_A Lipoprotein NLPI; TPR, 99.1 3.9E-09 1.3E-13 74.0 13.5 141 17-159 16-173 (275)
51 2ond_A Cleavage stimulation fa 99.1 1.2E-08 4E-13 73.5 15.9 156 2-159 95-270 (308)
52 1hh8_A P67PHOX, NCF-2, neutrop 99.1 3.2E-08 1.1E-12 67.0 16.9 146 5-159 5-150 (213)
53 3fp2_A TPR repeat-containing p 99.1 5.2E-09 1.8E-13 80.2 14.3 120 6-127 276-398 (537)
54 2h6f_A Protein farnesyltransfe 99.1 1.4E-08 4.9E-13 75.5 16.0 162 5-170 96-279 (382)
55 3urz_A Uncharacterized protein 99.1 7E-09 2.4E-13 70.6 13.0 163 6-172 4-197 (208)
56 3qky_A Outer membrane assembly 99.0 2.1E-08 7.1E-13 70.3 15.4 161 3-166 12-229 (261)
57 2ond_A Cleavage stimulation fa 99.0 1.1E-07 3.7E-12 68.5 19.4 166 4-172 48-248 (308)
58 3vtx_A MAMA; tetratricopeptide 99.0 4.3E-08 1.5E-12 64.9 16.1 135 36-174 4-150 (184)
59 3nf1_A KLC 1, kinesin light ch 99.0 6.3E-09 2.2E-13 74.1 12.7 154 5-158 68-306 (311)
60 1ouv_A Conserved hypothetical 99.0 1E-07 3.5E-12 67.0 18.8 150 5-160 37-216 (273)
61 3u4t_A TPR repeat-containing p 99.0 6.2E-08 2.1E-12 67.8 16.8 158 8-169 76-258 (272)
62 3as5_A MAMA; tetratricopeptide 99.0 3.8E-08 1.3E-12 64.5 14.6 136 37-175 8-154 (186)
63 4abn_A Tetratricopeptide repea 99.0 2.8E-09 9.4E-14 81.5 9.9 152 4-156 135-318 (474)
64 1na0_A Designed protein CTPR3; 98.9 2.8E-08 9.7E-13 60.9 11.8 114 4-119 7-123 (125)
65 2vsy_A XCC0866; transferase, g 98.9 4.9E-08 1.7E-12 76.0 14.9 139 19-159 2-157 (568)
66 2r5s_A Uncharacterized protein 98.9 8.5E-08 2.9E-12 63.3 14.1 148 8-158 8-172 (176)
67 2pzi_A Probable serine/threoni 98.9 2.7E-08 9.4E-13 79.2 13.0 144 17-165 402-567 (681)
68 3gw4_A Uncharacterized protein 98.9 5.6E-08 1.9E-12 65.1 12.6 142 17-158 3-175 (203)
69 2lni_A Stress-induced-phosphop 98.9 8.8E-08 3E-12 59.5 12.3 117 3-121 13-132 (133)
70 4gyw_A UDP-N-acetylglucosamine 98.9 1.2E-07 4.2E-12 75.9 15.9 135 36-174 8-154 (723)
71 3edt_B KLC 2, kinesin light ch 98.8 3.8E-08 1.3E-12 68.9 11.0 143 17-159 12-198 (283)
72 2yhc_A BAMD, UPF0169 lipoprote 98.8 2.8E-07 9.6E-12 63.3 15.1 154 5-159 3-213 (225)
73 2ooe_A Cleavage stimulation fa 98.8 3E-07 1E-11 70.9 16.8 152 5-159 271-454 (530)
74 3qou_A Protein YBBN; thioredox 98.8 1.1E-07 3.9E-12 67.8 13.3 151 5-158 116-283 (287)
75 4i17_A Hypothetical protein; T 98.8 3.6E-07 1.2E-11 62.5 15.3 126 36-164 6-149 (228)
76 3u3w_A Transcriptional activat 98.8 2.2E-07 7.6E-12 66.3 14.7 150 9-158 78-265 (293)
77 2vyi_A SGTA protein; chaperone 98.8 1.1E-07 3.9E-12 58.6 11.0 118 4-123 10-130 (131)
78 3ulq_A Response regulator aspa 98.8 1.3E-07 4.6E-12 69.8 12.6 153 6-158 184-367 (383)
79 1qqe_A Vesicular transport pro 98.8 2E-07 7E-12 66.5 12.8 151 8-158 39-227 (292)
80 4ga2_A E3 SUMO-protein ligase 98.8 8E-08 2.7E-12 62.0 9.7 106 15-122 6-114 (150)
81 3mv2_B Coatomer subunit epsilo 98.8 3.1E-07 1.1E-11 66.1 13.4 150 4-159 98-282 (310)
82 2qfc_A PLCR protein; TPR, HTH, 98.7 6.4E-07 2.2E-11 63.9 13.8 152 7-158 76-265 (293)
83 2fo7_A Synthetic consensus TPR 98.7 2.6E-07 8.9E-12 57.1 10.4 98 4-102 33-133 (136)
84 2kck_A TPR repeat; tetratricop 98.7 2E-07 7E-12 56.0 9.6 101 3-104 3-109 (112)
85 2ooe_A Cleavage stimulation fa 98.7 8.8E-07 3E-11 68.3 15.0 154 4-159 319-492 (530)
86 4a1s_A PINS, partner of inscut 98.7 5.8E-08 2E-12 72.0 8.1 151 8-158 50-251 (411)
87 3gyz_A Chaperone protein IPGC; 98.7 1.7E-07 5.7E-12 60.7 8.6 93 8-101 38-133 (151)
88 1xi4_A Clathrin heavy chain; a 98.7 2.1E-06 7.3E-11 72.5 16.9 141 5-156 1104-1247(1630)
89 3q15_A PSP28, response regulat 98.7 7.3E-07 2.5E-11 65.8 13.1 153 6-158 182-364 (378)
90 3gyz_A Chaperone protein IPGC; 98.7 1E-06 3.4E-11 57.0 12.2 127 9-166 12-138 (151)
91 1qqe_A Vesicular transport pro 98.6 4.3E-07 1.5E-11 64.8 11.2 152 6-157 77-267 (292)
92 4a1s_A PINS, partner of inscut 98.6 2.5E-07 8.4E-12 68.6 10.0 152 7-158 87-291 (411)
93 1a17_A Serine/threonine protei 98.6 1.7E-06 5.9E-11 55.7 12.9 129 6-157 13-144 (166)
94 4gco_A Protein STI-1; structur 98.6 6.1E-07 2.1E-11 56.1 10.3 106 6-113 13-121 (126)
95 2ifu_A Gamma-SNAP; membrane fu 98.6 6.5E-07 2.2E-11 64.4 11.8 149 8-157 38-222 (307)
96 3rjv_A Putative SEL1 repeat pr 98.6 2.5E-06 8.6E-11 58.0 14.1 156 4-163 16-201 (212)
97 4ga2_A E3 SUMO-protein ligase 98.6 4.7E-07 1.6E-11 58.3 9.9 115 6-122 31-149 (150)
98 3ro2_A PINS homolog, G-protein 98.6 2.8E-07 9.7E-12 65.8 9.7 154 6-159 123-332 (338)
99 2pzi_A Probable serine/threoni 98.6 3.3E-07 1.1E-11 73.0 10.8 139 4-145 431-583 (681)
100 4gco_A Protein STI-1; structur 98.6 3.6E-06 1.2E-10 52.5 13.6 106 37-169 13-118 (126)
101 3ulq_A Response regulator aspa 98.6 1.4E-06 4.8E-11 64.3 13.5 148 12-159 109-293 (383)
102 3ro2_A PINS homolog, G-protein 98.6 2.8E-07 9.7E-12 65.8 9.5 28 132-159 225-252 (338)
103 1xi4_A Clathrin heavy chain; a 98.6 2.3E-06 7.8E-11 72.3 15.4 139 4-158 1132-1308(1630)
104 3sf4_A G-protein-signaling mod 98.6 3.9E-07 1.3E-11 67.1 10.1 95 5-99 8-114 (406)
105 3sf4_A G-protein-signaling mod 98.6 5.6E-07 1.9E-11 66.3 10.8 151 8-158 89-295 (406)
106 3q15_A PSP28, response regulat 98.6 3.3E-06 1.1E-10 62.2 14.4 148 12-159 107-290 (378)
107 1a17_A Serine/threonine protei 98.6 1.2E-06 4E-11 56.5 10.6 89 37-127 13-101 (166)
108 3q49_B STIP1 homology and U bo 98.6 9.5E-07 3.2E-11 55.3 9.9 99 3-102 6-107 (137)
109 2dba_A Smooth muscle cell asso 98.6 2.8E-06 9.5E-11 53.6 12.0 109 3-113 25-139 (148)
110 4g1t_A Interferon-induced prot 98.5 1.1E-05 3.6E-10 60.9 17.1 154 5-159 50-276 (472)
111 2e2e_A Formate-dependent nitri 98.5 8.5E-07 2.9E-11 58.2 9.6 117 18-159 22-144 (177)
112 1elw_A TPR1-domain of HOP; HOP 98.5 2.5E-06 8.7E-11 51.4 11.1 108 4-113 2-112 (118)
113 2vgx_A Chaperone SYCD; alterna 98.5 1.7E-06 5.7E-11 55.6 10.7 97 5-102 20-119 (148)
114 3mv2_B Coatomer subunit epsilo 98.5 5.8E-06 2E-10 59.5 14.3 134 25-158 85-239 (310)
115 3qou_A Protein YBBN; thioredox 98.5 3.4E-06 1.2E-10 60.1 13.2 147 24-175 104-265 (287)
116 3sz7_A HSC70 cochaperone (SGT) 98.5 2.3E-06 8E-11 55.5 11.2 99 4-103 9-110 (164)
117 3upv_A Heat shock protein STI1 98.5 2.3E-06 7.7E-11 53.0 10.6 97 5-102 3-102 (126)
118 1na0_A Designed protein CTPR3; 98.5 4.5E-06 1.5E-10 50.8 11.9 98 37-159 9-106 (125)
119 4g1t_A Interferon-induced prot 98.5 5.5E-07 1.9E-11 68.0 8.7 96 73-168 335-469 (472)
120 2lni_A Stress-induced-phosphop 98.5 7.8E-06 2.7E-10 50.4 12.6 99 36-159 15-113 (133)
121 2vsy_A XCC0866; transferase, g 98.5 3E-06 1E-10 65.9 12.8 122 4-127 21-148 (568)
122 2vyi_A SGTA protein; chaperone 98.5 5.1E-06 1.7E-10 51.0 11.6 99 36-159 11-109 (131)
123 2xcb_A PCRH, regulatory protei 98.5 1.3E-06 4.3E-11 55.5 8.7 97 5-102 17-116 (142)
124 2r5s_A Uncharacterized protein 98.5 5.8E-06 2E-10 54.3 12.0 123 4-127 38-164 (176)
125 1p5q_A FKBP52, FK506-binding p 98.4 5.4E-06 1.8E-10 60.5 12.5 119 37-156 147-291 (336)
126 3upv_A Heat shock protein STI1 98.4 1.3E-05 4.5E-10 49.4 12.7 98 37-159 4-101 (126)
127 1elr_A TPR2A-domain of HOP; HO 98.4 1.5E-06 5.1E-11 53.5 8.2 111 5-117 3-122 (131)
128 2vgx_A Chaperone SYCD; alterna 98.4 8.8E-06 3E-10 52.2 12.0 98 36-158 20-117 (148)
129 1p5q_A FKBP52, FK506-binding p 98.4 2.3E-06 7.9E-11 62.4 10.2 132 5-140 146-295 (336)
130 3qky_A Outer membrane assembly 98.4 2.4E-05 8.1E-10 54.6 15.1 124 34-159 12-177 (261)
131 2c2l_A CHIP, carboxy terminus 98.4 3.3E-06 1.1E-10 60.0 10.4 98 4-102 2-102 (281)
132 4gcn_A Protein STI-1; structur 98.4 1.9E-05 6.3E-10 49.2 12.8 114 38-171 9-122 (127)
133 1hh8_A P67PHOX, NCF-2, neutrop 98.4 9.6E-06 3.3E-10 54.6 12.3 118 3-120 34-169 (213)
134 2xcb_A PCRH, regulatory protei 98.4 1.2E-05 4.1E-10 50.9 12.0 98 36-158 17-114 (142)
135 3q49_B STIP1 homology and U bo 98.4 1.7E-05 6E-10 49.4 12.6 99 35-158 7-105 (137)
136 3gw4_A Uncharacterized protein 98.4 1.2E-05 4E-10 53.6 12.4 151 4-157 24-194 (203)
137 2xm6_A Protein corresponding t 98.4 0.00011 3.9E-09 55.9 18.7 149 5-159 38-216 (490)
138 2fbn_A 70 kDa peptidylprolyl i 98.4 1.8E-06 6.1E-11 57.9 7.8 145 12-157 10-184 (198)
139 3sz7_A HSC70 cochaperone (SGT) 98.4 1.4E-05 4.8E-10 51.8 11.9 90 36-127 10-99 (164)
140 2kck_A TPR repeat; tetratricop 98.4 1.5E-05 5.1E-10 47.5 11.3 101 36-159 5-106 (112)
141 2xm6_A Protein corresponding t 98.4 5.4E-05 1.9E-09 57.7 16.7 146 7-158 76-251 (490)
142 3u3w_A Transcriptional activat 98.4 6.2E-05 2.1E-09 53.5 16.1 119 40-158 78-224 (293)
143 1elw_A TPR1-domain of HOP; HOP 98.4 3E-05 1E-09 46.5 12.6 102 37-165 4-105 (118)
144 1elr_A TPR2A-domain of HOP; HO 98.3 2.4E-05 8.3E-10 47.9 12.1 115 37-171 4-118 (131)
145 3ro3_A PINS homolog, G-protein 98.3 7.3E-06 2.5E-10 52.1 10.0 135 6-158 9-157 (164)
146 2fbn_A 70 kDa peptidylprolyl i 98.3 8.1E-06 2.8E-10 54.6 10.3 120 6-127 38-176 (198)
147 2dba_A Smooth muscle cell asso 98.3 8.1E-05 2.8E-09 46.7 14.3 103 35-165 26-132 (148)
148 1hxi_A PEX5, peroxisome target 98.3 2.5E-06 8.6E-11 52.8 6.9 94 8-102 19-115 (121)
149 3dra_A Protein farnesyltransfe 98.3 0.00016 5.6E-09 52.1 16.9 152 5-158 102-286 (306)
150 1hz4_A MALT regulatory protein 98.3 6.4E-05 2.2E-09 55.0 15.2 151 8-158 95-281 (373)
151 4e6h_A MRNA 3'-END-processing 98.3 5.5E-05 1.9E-09 60.3 15.2 168 4-175 376-584 (679)
152 4gcn_A Protein STI-1; structur 98.2 6.6E-06 2.3E-10 51.3 8.0 105 6-112 8-121 (127)
153 2e2e_A Formate-dependent nitri 98.2 1.9E-05 6.4E-10 51.7 10.0 100 4-104 42-147 (177)
154 1wao_1 Serine/threonine protei 98.2 2.3E-05 8E-10 59.9 11.5 117 9-127 9-130 (477)
155 1hz4_A MALT regulatory protein 98.2 0.00015 5E-09 53.1 15.4 151 9-159 17-203 (373)
156 4f3v_A ESX-1 secretion system 98.2 0.00014 4.9E-09 51.6 14.6 133 9-165 105-241 (282)
157 3k9i_A BH0479 protein; putativ 98.2 6.2E-06 2.1E-10 50.5 6.6 85 50-158 3-89 (117)
158 2xev_A YBGF; tetratricopeptide 98.2 2.1E-05 7.1E-10 48.5 8.9 93 9-103 5-107 (129)
159 4b4t_Q 26S proteasome regulato 98.1 5.2E-05 1.8E-09 56.5 12.1 146 13-158 11-203 (434)
160 1hxi_A PEX5, peroxisome target 98.1 3.6E-05 1.2E-09 47.5 9.5 96 39-159 19-114 (121)
161 3rkv_A Putative peptidylprolyl 98.1 2.7E-05 9.3E-10 50.3 9.2 97 6-103 11-128 (162)
162 2qfc_A PLCR protein; TPR, HTH, 98.1 0.00023 8E-09 50.5 14.7 122 38-159 76-225 (293)
163 1ihg_A Cyclophilin 40; ppiase 98.1 2.7E-05 9.2E-10 57.6 10.1 118 7-126 224-360 (370)
164 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 2E-05 6.8E-10 59.9 9.2 119 6-126 268-404 (457)
165 3rjv_A Putative SEL1 repeat pr 98.1 0.00061 2.1E-08 46.1 15.9 118 35-159 16-158 (212)
166 2xev_A YBGF; tetratricopeptide 98.1 0.00025 8.4E-09 43.5 12.8 101 42-166 7-110 (129)
167 2yhc_A BAMD, UPF0169 lipoprote 98.1 0.00038 1.3E-08 47.4 14.5 127 37-165 4-180 (225)
168 3ro3_A PINS homolog, G-protein 98.0 3.3E-05 1.1E-09 49.0 7.8 90 38-127 10-109 (164)
169 2ifu_A Gamma-SNAP; membrane fu 98.0 8.8E-05 3E-09 53.2 10.7 119 39-158 38-183 (307)
170 3n71_A Histone lysine methyltr 98.0 5.1E-05 1.8E-09 58.2 10.0 112 48-159 320-464 (490)
171 3urz_A Uncharacterized protein 98.0 6.6E-05 2.3E-09 50.7 9.6 113 12-127 60-177 (208)
172 3rkv_A Putative peptidylprolyl 98.0 0.00018 6.2E-09 46.3 11.3 99 37-159 11-126 (162)
173 1wao_1 Serine/threonine protei 98.0 2E-05 6.8E-10 60.3 7.4 108 45-154 14-134 (477)
174 3k9i_A BH0479 protein; putativ 98.0 1.9E-05 6.7E-10 48.2 6.0 99 18-117 2-107 (117)
175 4b4t_Q 26S proteasome regulato 97.9 0.00025 8.4E-09 52.8 12.6 151 8-158 57-244 (434)
176 2c2l_A CHIP, carboxy terminus 97.9 0.00025 8.5E-09 50.2 11.7 90 36-127 3-92 (281)
177 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00013 4.5E-09 55.4 10.7 121 36-157 267-413 (457)
178 4e6h_A MRNA 3'-END-processing 97.8 0.00063 2.2E-08 54.3 13.7 155 5-159 342-533 (679)
179 3e4b_A ALGK; tetratricopeptide 97.8 0.0022 7.4E-08 48.6 16.2 145 8-160 178-352 (452)
180 3n71_A Histone lysine methyltr 97.8 9.3E-05 3.2E-09 56.8 8.6 113 15-127 318-455 (490)
181 4f3v_A ESX-1 secretion system 97.8 0.00078 2.7E-08 47.9 12.6 105 8-114 137-248 (282)
182 1na3_A Designed protein CTPR2; 97.8 0.00049 1.7E-08 39.3 9.8 81 37-119 9-89 (91)
183 2l6j_A TPR repeat-containing p 97.8 0.00026 8.7E-09 42.1 8.8 63 38-101 5-67 (111)
184 2if4_A ATFKBP42; FKBP-like, al 97.8 0.00021 7.3E-09 52.1 9.3 119 38-159 180-328 (338)
185 3q7a_A Farnesyltransferase alp 97.7 0.0049 1.7E-07 45.2 16.1 153 4-158 121-330 (349)
186 2l6j_A TPR repeat-containing p 97.7 0.00014 4.9E-09 43.2 6.9 90 4-95 2-101 (111)
187 1na3_A Designed protein CTPR2; 97.7 0.00019 6.5E-09 41.0 7.0 78 5-83 8-88 (91)
188 1ihg_A Cyclophilin 40; ppiase 97.7 0.00041 1.4E-08 51.3 9.8 97 38-158 224-335 (370)
189 2hr2_A Hypothetical protein; a 97.7 0.00027 9.1E-09 45.9 7.8 93 8-100 13-130 (159)
190 2hr2_A Hypothetical protein; a 97.6 0.0017 5.7E-08 42.1 11.1 115 39-172 13-149 (159)
191 3e4b_A ALGK; tetratricopeptide 97.6 0.0072 2.5E-07 45.7 16.4 146 6-157 141-314 (452)
192 3ma5_A Tetratricopeptide repea 97.6 0.00066 2.3E-08 40.0 8.2 64 36-100 6-69 (100)
193 2kat_A Uncharacterized protein 97.5 0.00028 9.5E-09 42.6 6.4 65 36-101 18-82 (115)
194 3qwp_A SET and MYND domain-con 97.5 0.00054 1.9E-08 51.7 8.2 88 12-99 293-398 (429)
195 2if4_A ATFKBP42; FKBP-like, al 97.4 0.0003 1E-08 51.3 6.1 109 6-116 179-307 (338)
196 2kat_A Uncharacterized protein 97.4 0.0071 2.4E-07 36.2 11.1 71 54-126 2-72 (115)
197 3qww_A SET and MYND domain-con 97.3 0.0018 6.3E-08 48.9 9.6 89 49-158 310-410 (433)
198 3dra_A Protein farnesyltransfe 97.3 0.012 4.2E-07 42.3 13.4 38 86-124 124-161 (306)
199 3qwp_A SET and MYND domain-con 97.3 0.0035 1.2E-07 47.3 10.6 96 43-158 293-399 (429)
200 3qww_A SET and MYND domain-con 97.3 0.00047 1.6E-08 52.1 5.8 83 18-100 310-410 (433)
201 3ma5_A Tetratricopeptide repea 97.2 0.0079 2.7E-07 35.2 9.8 85 71-159 6-90 (100)
202 1klx_A Cysteine rich protein B 97.2 0.0063 2.2E-07 38.1 9.5 110 21-161 10-128 (138)
203 1zu2_A Mitochondrial import re 97.1 0.002 6.9E-08 41.6 6.9 112 49-176 14-135 (158)
204 3mkq_A Coatomer beta'-subunit; 97.1 0.019 6.4E-07 46.2 13.8 76 10-99 633-708 (814)
205 3mkq_A Coatomer beta'-subunit; 97.0 0.0057 2E-07 49.2 10.3 46 16-63 662-707 (814)
206 3q7a_A Farnesyltransferase alp 97.0 0.064 2.2E-06 39.3 14.5 153 9-165 57-241 (349)
207 1dce_A Protein (RAB geranylger 96.9 0.084 2.9E-06 41.3 15.1 145 17-165 39-225 (567)
208 2kc7_A BFR218_protein; tetratr 96.8 0.016 5.4E-07 33.5 8.7 57 45-102 8-65 (99)
209 3dss_A Geranylgeranyl transfer 96.8 0.051 1.8E-06 39.5 12.5 140 22-165 90-271 (331)
210 3dss_A Geranylgeranyl transfer 96.5 0.13 4.5E-06 37.3 14.2 153 3-158 105-303 (331)
211 2uy1_A Cleavage stimulation fa 96.5 0.15 5.1E-06 39.1 14.3 149 6-158 213-412 (493)
212 2kc7_A BFR218_protein; tetratr 96.5 0.0039 1.3E-07 36.2 4.2 56 12-67 6-65 (99)
213 1zu2_A Mitochondrial import re 96.2 0.01 3.5E-07 38.4 5.3 96 17-115 13-132 (158)
214 3mkq_B Coatomer subunit alpha; 96.2 0.088 3E-06 34.6 9.8 98 13-127 12-109 (177)
215 1wy6_A Hypothetical protein ST 96.2 0.082 2.8E-06 33.3 9.0 69 36-105 90-158 (172)
216 1klx_A Cysteine rich protein B 96.1 0.035 1.2E-06 34.6 7.5 90 12-104 31-129 (138)
217 1dce_A Protein (RAB geranylger 96.1 0.045 1.5E-06 42.8 9.4 114 5-120 62-191 (567)
218 3bee_A Putative YFRE protein; 96.1 0.056 1.9E-06 31.4 7.6 48 53-101 25-72 (93)
219 2v5f_A Prolyl 4-hydroxylase su 95.9 0.12 4.1E-06 30.4 8.8 63 41-103 9-77 (104)
220 1v54_E Cytochrome C oxidase po 95.8 0.13 4.4E-06 30.5 8.3 64 52-116 25-88 (109)
221 3bee_A Putative YFRE protein; 95.8 0.036 1.2E-06 32.2 6.2 65 3-67 3-73 (93)
222 4fhn_B Nucleoporin NUP120; pro 95.8 0.71 2.4E-05 39.2 16.0 137 10-148 816-989 (1139)
223 3lvg_A Clathrin heavy chain 1; 95.8 0.00056 1.9E-08 52.2 -2.4 135 6-151 54-220 (624)
224 4h7y_A Dual specificity protei 95.7 0.16 5.3E-06 32.5 9.0 112 2-115 9-136 (161)
225 1pc2_A Mitochondria fission pr 95.2 0.32 1.1E-05 31.1 10.5 91 52-167 13-106 (152)
226 2ff4_A Probable regulatory pro 95.1 0.17 5.8E-06 37.6 8.9 71 41-112 175-250 (388)
227 3ly7_A Transcriptional activat 95.0 0.74 2.5E-05 34.0 14.2 131 36-170 193-348 (372)
228 2v5f_A Prolyl 4-hydroxylase su 94.8 0.25 8.6E-06 29.0 7.6 77 70-165 3-79 (104)
229 3ly7_A Transcriptional activat 94.6 0.22 7.6E-06 36.7 8.2 57 69-127 274-330 (372)
230 3u64_A Protein TP_0956; tetrat 94.6 0.23 8E-06 35.4 8.0 92 23-114 180-284 (301)
231 2y69_E Cytochrome C oxidase su 94.5 0.49 1.7E-05 29.6 8.3 64 52-116 68-131 (152)
232 2uy1_A Cleavage stimulation fa 94.3 0.26 9E-06 37.7 8.5 113 7-126 287-403 (493)
233 4gns_B Protein CSD3, chitin bi 94.1 0.69 2.4E-05 37.5 10.8 114 41-156 252-397 (754)
234 2nsz_A Programmed cell death p 93.9 0.64 2.2E-05 28.7 8.5 70 9-78 10-84 (129)
235 2ff4_A Probable regulatory pro 93.8 0.23 7.9E-06 36.8 7.2 68 9-76 174-249 (388)
236 1pc2_A Mitochondria fission pr 93.7 0.35 1.2E-05 30.9 6.9 68 35-103 30-102 (152)
237 1ug3_A EIF4GI, eukaryotic prot 93.5 1.3 4.3E-05 32.3 10.5 141 9-155 14-166 (339)
238 2ion_A PDCD4, programmed cell 92.8 0.67 2.3E-05 29.6 7.2 74 9-82 12-90 (152)
239 3u64_A Protein TP_0956; tetrat 92.3 2.2 7.5E-05 30.5 10.6 125 20-169 135-281 (301)
240 4fhn_B Nucleoporin NUP120; pro 92.3 4.8 0.00017 34.3 15.8 147 10-158 846-1049(1139)
241 3mkq_B Coatomer subunit alpha; 91.8 1.8 6.1E-05 28.4 13.0 95 46-155 14-114 (177)
242 3lvg_A Clathrin heavy chain 1; 91.3 0.0044 1.5E-07 47.5 -5.0 113 36-156 53-170 (624)
243 1nzn_A CGI-135 protein, fissio 90.6 1.9 6.6E-05 26.5 8.5 90 51-165 15-107 (126)
244 1wy6_A Hypothetical protein ST 90.3 2.3 7.9E-05 26.9 10.7 122 16-161 17-156 (172)
245 2nsz_A Programmed cell death p 89.8 2.3 8E-05 26.2 8.4 82 39-121 9-92 (129)
246 2ion_A PDCD4, programmed cell 89.4 2.8 9.7E-05 26.7 8.4 92 39-131 11-104 (152)
247 2xig_A Ferric uptake regulatio 89.4 2.8 9.5E-05 26.5 7.6 67 60-127 15-81 (150)
248 4b4t_R RPN7, 26S proteasome re 89.3 3.2 0.00011 31.1 9.0 94 8-101 133-237 (429)
249 4b4t_R RPN7, 26S proteasome re 89.3 5.6 0.00019 29.8 10.6 61 39-99 133-195 (429)
250 2fe3_A Peroxide operon regulat 88.9 3 0.0001 26.2 7.5 66 61-127 11-76 (145)
251 1nzn_A CGI-135 protein, fissio 88.6 1.6 5.4E-05 26.9 5.7 68 35-103 33-105 (126)
252 4gns_B Protein CSD3, chitin bi 88.5 1.6 5.6E-05 35.4 7.2 117 10-127 252-391 (754)
253 1mzb_A Ferric uptake regulatio 88.1 2.8 9.6E-05 25.9 6.9 66 61-127 7-73 (136)
254 2w57_A Ferric uptake regulatio 88.1 3.5 0.00012 26.0 7.4 66 61-127 6-72 (150)
255 2zu6_B Programmed cell death p 87.4 3.9 0.00013 29.3 8.0 25 11-35 171-195 (307)
256 2uwj_G Type III export protein 87.4 3 0.0001 24.6 7.6 51 46-102 48-98 (115)
257 3esl_A Checkpoint serine/threo 87.3 5 0.00017 26.9 9.9 72 35-106 75-149 (202)
258 3eiq_C Programmed cell death p 86.7 5.8 0.0002 29.1 8.7 93 40-133 220-314 (358)
259 2p58_C Putative type III secre 86.7 3.4 0.00012 24.4 7.4 75 21-102 22-99 (116)
260 3eyy_A Putative iron uptake re 85.5 2.7 9.2E-05 26.4 5.8 65 61-127 8-72 (145)
261 4ets_A Ferric uptake regulatio 85.5 5.4 0.00018 25.6 7.7 73 54-127 14-89 (162)
262 2fu4_A Ferric uptake regulatio 84.1 3.8 0.00013 22.6 7.3 65 61-126 6-71 (83)
263 1v54_E Cytochrome C oxidase po 83.6 3.9 0.00013 24.2 5.3 45 128-173 43-87 (109)
264 3ltj_A Alpharep-4; protein eng 82.7 7.7 0.00026 25.2 17.8 148 3-159 25-180 (201)
265 1y8m_A FIS1; mitochondria, unk 81.8 4.8 0.00016 25.3 5.6 69 35-103 37-108 (144)
266 1ug3_A EIF4GI, eukaryotic prot 80.9 3.5 0.00012 29.9 5.5 74 40-114 14-88 (339)
267 4a1g_A Mitotic checkpoint seri 78.7 10 0.00035 24.1 9.8 68 36-106 67-135 (152)
268 3mwm_A ZUR, putative metal upt 78.0 6.1 0.00021 24.5 5.3 64 63-127 5-68 (139)
269 3o48_A Mitochondria fission 1 78.0 10 0.00034 23.6 7.1 68 36-103 39-109 (134)
270 2b7e_A PRE-mRNA processing pro 77.6 1.2 4.2E-05 23.3 1.6 34 53-86 2-36 (59)
271 2y69_E Cytochrome C oxidase su 76.4 8.2 0.00028 24.2 5.3 45 128-173 86-130 (152)
272 2zu6_B Programmed cell death p 76.1 16 0.00054 26.2 7.6 93 39-132 168-262 (307)
273 3bu8_A Telomeric repeat-bindin 76.1 16 0.00053 24.8 7.7 83 53-137 88-177 (235)
274 1zbp_A Hypothetical protein VP 75.6 10 0.00034 26.7 6.2 115 44-159 4-129 (273)
275 3ffl_A Anaphase-promoting comp 75.5 14 0.00047 23.9 6.9 117 40-157 23-149 (167)
276 2o03_A Probable zinc uptake re 75.1 6.3 0.00021 24.1 4.8 51 77-127 15-65 (131)
277 3eiq_C Programmed cell death p 74.8 23 0.00077 26.0 8.3 62 10-71 221-287 (358)
278 3l6a_A Eukaryotic translation 74.6 23 0.00078 26.0 11.8 92 8-99 14-114 (364)
279 3ygs_P Procaspase 9; apoptosis 73.5 4.3 0.00015 23.6 3.5 38 51-92 51-88 (97)
280 3txn_A 26S proteasome regulato 73.3 26 0.00089 26.1 14.8 119 8-127 21-159 (394)
281 2rg8_A Programmed cell death p 73.1 16 0.00054 23.5 7.3 27 9-35 13-39 (165)
282 4gq2_M Nucleoporin NUP120; bet 72.9 41 0.0014 28.2 12.7 51 12-63 816-866 (950)
283 3hra_A Ankyrin repeat family p 72.4 12 0.00041 24.0 5.9 144 13-165 9-173 (201)
284 3t8k_A Uncharacterized protein 71.4 18 0.00061 23.4 7.5 93 14-106 11-108 (186)
285 3ltm_A Alpha-REP4; protein eng 71.3 18 0.00063 23.5 18.3 148 3-159 30-185 (211)
286 4b4t_P 26S proteasome regulato 71.3 31 0.001 26.0 14.0 25 6-30 56-80 (445)
287 4aez_C MAD3, mitotic spindle c 70.2 23 0.00078 24.1 9.0 68 36-106 116-184 (223)
288 2wvi_A Mitotic checkpoint seri 70.0 19 0.00065 23.2 9.9 70 35-107 61-131 (164)
289 2wpv_A GET4, UPF0363 protein Y 69.9 28 0.00095 25.0 15.8 80 48-127 64-154 (312)
290 1zbp_A Hypothetical protein VP 69.5 26 0.0009 24.6 11.8 103 13-127 4-120 (273)
291 3esl_A Checkpoint serine/threo 69.3 23 0.00077 23.7 9.9 67 74-163 82-148 (202)
292 2d2s_A Exocyst complex compone 68.5 14 0.00047 25.3 5.6 81 12-95 24-114 (235)
293 3ffl_A Anaphase-promoting comp 67.6 22 0.00076 23.0 8.5 93 7-99 21-149 (167)
294 2rg8_A Programmed cell death p 64.6 25 0.00086 22.5 7.9 94 39-134 12-106 (165)
295 4b4t_P 26S proteasome regulato 62.7 47 0.0016 25.0 11.4 106 40-148 140-256 (445)
296 4h7y_A Dual specificity protei 62.4 28 0.00095 22.3 11.6 112 35-172 11-135 (161)
297 2keb_A DNA polymerase subunit 62.2 21 0.00072 20.8 6.1 58 54-113 26-88 (101)
298 3l6a_A Eukaryotic translation 61.5 45 0.0016 24.5 10.7 92 39-130 14-106 (364)
299 2fe3_A Peroxide operon regulat 60.8 27 0.00093 21.6 5.9 65 24-88 8-72 (145)
300 2wpv_A GET4, UPF0363 protein Y 60.5 44 0.0015 24.0 11.9 113 39-153 35-157 (312)
301 2uwj_G Type III export protein 60.4 24 0.00081 20.9 8.2 77 88-169 22-106 (115)
302 2p58_C Putative type III secre 60.1 24 0.00083 20.9 7.5 77 88-169 23-107 (116)
303 3txn_A 26S proteasome regulato 60.0 51 0.0017 24.5 11.5 87 11-98 104-207 (394)
304 3lpz_A GET4 (YOR164C homolog); 56.6 54 0.0019 23.8 11.8 93 61-153 83-190 (336)
305 2p1h_A APAF-1, apoptotic prote 55.4 20 0.00068 20.3 4.0 37 49-89 48-84 (94)
306 3f3f_C Nucleoporin NUP85; stru 53.5 50 0.0017 25.9 6.8 51 73-125 517-567 (570)
307 3qil_A Clathrin heavy chain 1; 52.6 32 0.0011 21.0 4.5 53 39-94 34-86 (125)
308 3t8k_A Uncharacterized protein 51.8 45 0.0015 21.4 8.0 57 47-107 13-70 (186)
309 2o03_A Probable zinc uptake re 51.6 34 0.0012 20.7 4.8 47 42-88 15-61 (131)
310 4ady_A RPN2, 26S proteasome re 50.3 1.2E+02 0.004 25.7 10.8 44 107-158 215-258 (963)
311 3mwm_A ZUR, putative metal upt 50.0 29 0.001 21.3 4.4 48 41-88 17-64 (139)
312 4ets_A Ferric uptake regulatio 49.9 38 0.0013 21.5 5.0 64 25-88 20-85 (162)
313 3k1s_A PTS system, cellobiose- 49.6 39 0.0013 20.1 6.1 77 82-159 32-108 (109)
314 2xig_A Ferric uptake regulatio 48.9 46 0.0016 20.7 6.0 64 25-88 14-77 (150)
315 4b4t_O 26S proteasome regulato 48.9 74 0.0025 23.5 7.0 83 44-126 83-188 (393)
316 3ltm_A Alpha-REP4; protein eng 48.8 51 0.0018 21.2 15.0 113 3-123 61-173 (211)
317 1wgl_A TOLL-interacting protei 48.8 27 0.00094 18.1 4.2 25 141-165 34-58 (59)
318 3kea_A K1L; tropism, ANK repea 48.7 43 0.0015 23.1 5.6 46 12-57 34-79 (285)
319 2yru_A Steroid receptor RNA ac 47.4 32 0.0011 20.8 4.0 44 59-102 48-91 (118)
320 2d2s_A Exocyst complex compone 46.9 66 0.0023 21.9 6.4 83 42-127 23-111 (235)
321 3cqc_A Nuclear pore complex pr 46.8 16 0.00054 25.6 3.0 27 9-35 37-63 (270)
322 3twr_A Tankyrase-2; ankyrin re 46.6 45 0.0015 20.4 5.0 86 11-105 10-101 (165)
323 2ijq_A Hypothetical protein; s 46.3 56 0.0019 20.9 6.1 53 48-100 43-103 (161)
324 3eyy_A Putative iron uptake re 45.9 51 0.0018 20.4 5.4 62 26-88 7-68 (145)
325 3eu9_A Huntingtin-interacting 45.4 31 0.0011 22.5 4.3 16 16-31 16-31 (240)
326 1uzc_A Hypothetical protein FL 44.3 22 0.00076 19.3 2.7 37 52-88 13-49 (71)
327 3bqo_A Telomeric repeat-bindin 44.0 25 0.00084 23.5 3.3 82 53-137 94-180 (211)
328 4a1g_A Mitotic checkpoint seri 43.5 61 0.0021 20.5 9.8 55 89-165 82-136 (152)
329 1oai_A Nuclear RNA export fact 41.9 28 0.00096 18.0 2.8 21 51-71 34-54 (59)
330 1wdy_A 2-5A-dependent ribonucl 41.3 78 0.0027 21.1 6.2 58 10-71 6-66 (285)
331 2ko4_A Mediator of RNA polymer 41.2 46 0.0016 18.5 4.0 29 35-63 34-62 (81)
332 2f6m_A Suppressor protein STP2 41.2 41 0.0014 17.9 3.6 45 131-176 3-47 (65)
333 1ixm_A SPO0B, protein (sporula 41.0 33 0.0011 22.6 3.7 25 134-158 36-60 (192)
334 2dod_A Transcription elongatio 40.2 26 0.0009 19.6 2.7 37 52-88 15-51 (82)
335 3t5v_B Nuclear mRNA export pro 39.6 1.2E+02 0.0042 23.0 7.6 63 39-101 178-249 (455)
336 1k1a_A B-cell lymphoma 3-encod 39.1 78 0.0027 20.6 5.7 19 12-30 12-30 (241)
337 3kae_A CDC27, possible protein 39.1 82 0.0028 20.8 8.3 77 19-97 46-139 (242)
338 4b4t_S RPN3, 26S proteasome re 38.3 1.4E+02 0.0048 23.2 11.8 60 7-66 232-299 (523)
339 2rfa_A Transient receptor pote 38.3 81 0.0028 20.5 7.6 145 12-163 6-184 (232)
340 1pbw_A Rhogap domain, phosphat 38.0 87 0.003 20.8 5.6 73 52-124 75-151 (216)
341 3aji_A 26S proteasome non-ATPa 37.6 53 0.0018 21.3 4.5 138 12-164 9-166 (231)
342 3us6_A Histidine-containing ph 37.5 76 0.0026 19.9 7.9 41 9-49 10-51 (153)
343 4aez_C MAD3, mitotic spindle c 36.8 98 0.0034 21.0 9.0 54 89-164 131-184 (223)
344 3pvs_A Replication-associated 36.1 1.4E+02 0.0047 22.5 10.4 115 54-173 168-298 (447)
345 1q2z_A ATP-dependent DNA helic 35.6 22 0.00075 21.5 2.0 52 52-103 42-94 (120)
346 2w57_A Ferric uptake regulatio 34.8 82 0.0028 19.5 5.1 52 37-88 16-68 (150)
347 1qsa_A Protein (soluble lytic 34.8 1.7E+02 0.0059 23.2 10.6 77 10-88 76-152 (618)
348 1mzb_A Ferric uptake regulatio 34.6 78 0.0027 19.2 5.5 53 36-88 16-69 (136)
349 3kea_A K1L; tropism, ANK repea 34.5 1.1E+02 0.0038 20.9 6.9 15 16-30 69-83 (285)
350 3kae_A CDC27, possible protein 33.7 55 0.0019 21.6 3.7 130 14-156 10-140 (242)
351 3f3f_C Nucleoporin NUP85; stru 32.7 1.7E+02 0.006 23.0 6.9 16 135-150 554-569 (570)
352 2wvi_A Mitotic checkpoint seri 32.1 1E+02 0.0035 19.8 9.3 55 89-165 77-131 (164)
353 3v30_A DNA-binding protein rfx 31.3 92 0.0031 19.0 5.0 84 13-106 6-96 (172)
354 2crb_A Nuclear receptor bindin 31.1 58 0.002 18.8 3.1 19 44-62 22-40 (97)
355 3ltj_A Alpharep-4; protein eng 30.5 1.1E+02 0.0036 19.5 14.6 114 3-124 56-169 (201)
356 3o48_A Mitochondria fission 1 28.9 1.1E+02 0.0036 19.0 8.9 75 67-166 35-112 (134)
357 3lpz_A GET4 (YOR164C homolog); 28.9 1.7E+02 0.0057 21.3 17.7 145 7-158 36-215 (336)
358 1lsh_A Lipovitellin (LV-1N, LV 28.2 2.8E+02 0.0096 23.7 15.6 111 8-121 312-430 (1056)
359 1oxz_A ADP-ribosylation factor 28.0 74 0.0025 20.9 3.7 18 141-158 142-159 (186)
360 1rw2_A ATP-dependent DNA helic 27.9 28 0.00095 22.1 1.6 30 53-82 74-104 (152)
361 3cqc_A Nuclear pore complex pr 27.3 47 0.0016 23.2 2.8 25 132-156 36-60 (270)
362 3lxu_X Tripeptidyl-peptidase 2 26.6 3.4E+02 0.012 24.1 8.3 35 49-85 1296-1330(1354)
363 2etb_A Transient receptor pote 26.4 1.3E+02 0.0044 19.9 5.0 16 138-153 141-156 (256)
364 3t5v_B Nuclear mRNA export pro 26.3 1.5E+02 0.0053 22.5 5.6 53 74-126 178-239 (455)
365 3hzj_A Rabgap1L, RAB GTPase-ac 25.3 1.3E+02 0.0046 21.1 5.0 37 66-102 183-219 (310)
366 1wcr_A PTS system, N, N'-diace 25.2 68 0.0023 18.8 2.8 17 140-156 28-44 (103)
367 2p22_A Suppressor protein STP2 25.2 1.2E+02 0.0042 19.7 4.2 51 69-120 108-158 (174)
368 3qye_A TBC1 domain family memb 25.2 1.2E+02 0.0041 21.6 4.8 28 93-120 209-236 (331)
369 2jp7_A MRNA export factor MEX6 25.1 38 0.0013 17.5 1.5 20 52-72 34-53 (57)
370 2qq8_A TBC1 domain family memb 25.0 1.2E+02 0.004 21.8 4.7 31 94-124 215-245 (334)
371 2qcx_A Transcriptional activat 24.0 1.8E+02 0.0062 20.0 7.8 91 32-124 131-232 (263)
372 3jxi_A Vanilloid receptor-rela 23.3 1.7E+02 0.0057 19.3 7.2 17 137-153 144-160 (260)
373 3crd_A Raidd; caspase recruitm 22.6 1E+02 0.0035 17.6 3.3 32 49-84 47-78 (100)
374 3utm_A Tankyrase-1; tankyrase, 22.5 1.6E+02 0.0056 20.3 5.1 85 11-105 26-117 (351)
375 2rpa_A Katanin P60 ATPase-cont 22.2 1.1E+02 0.0037 16.9 3.1 24 135-158 17-40 (78)
376 2r9g_A AAA ATPase, central reg 22.1 1.8E+02 0.0063 19.4 8.7 54 49-103 26-84 (204)
377 2e2a_A Protein (enzyme IIA); h 22.0 1.3E+02 0.0045 17.6 5.7 75 81-156 29-103 (105)
378 2f8y_A Notch homolog 1, transl 21.9 1.6E+02 0.0056 18.7 6.1 49 12-61 28-79 (223)
379 3m0z_A Putative aldolase; MCSG 21.8 83 0.0028 21.6 3.0 79 22-100 147-246 (249)
380 3f6q_A Integrin-linked protein 21.7 1.5E+02 0.0051 18.2 5.8 84 13-105 9-98 (179)
381 1zl8_A LIN-7; heterodimer, alp 21.6 90 0.0031 15.6 4.6 21 52-72 8-28 (53)
382 2qfz_A TBC1 domain family memb 21.0 2.3E+02 0.008 20.2 5.8 35 93-127 230-264 (345)
383 3ljn_A Hypothetical protein; a 21.0 2.2E+02 0.0077 20.0 6.3 93 5-103 17-112 (364)
384 3c1d_A Protein ORAA, regulator 20.6 1.7E+02 0.0057 18.4 5.6 53 52-106 45-97 (159)
385 1jog_A Hypothetical protein HI 20.1 60 0.0021 20.2 2.0 70 38-112 41-115 (146)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.3e-37 Score=237.38 Aligned_cols=171 Identities=9% Similarity=0.078 Sum_probs=163.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHhccCC----CCChhHHHHHHHHHhhcCC---------hhHHHHHHHHhHhCCCCCcHH
Q 036068 7 ISWTAIVSRYINRGQVDIARQCFDQMP----ERDYVLWTAMIDGYLRVNR---------FREALTLFQEMQTSNIMGDEF 73 (178)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~li~~~~~~~~---------~~~a~~~~~~m~~~~~~~~~~ 73 (178)
.+++.+|++|++.|++++|.++|++|+ +||..+||+||.+|++.+. .++|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 457889999999999999999999997 4899999999999998765 688999999999999999999
Q ss_pred HHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc------------cchhhHHHHHHHHH
Q 036068 74 TIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ------------KDKFSWTTMIVGLA 141 (178)
Q Consensus 74 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~------------~~~~~~~~li~~~~ 141 (178)
||+++|.+|++.|++++|.++|++|.+.|+.|+..||+++|.+|++.|++++|. ||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999997 89999999999999
Q ss_pred hcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhhhc
Q 036068 142 ISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACTH 177 (178)
Q Consensus 142 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~ 177 (178)
+.|++++|.+++++|.+.|+.|+..||+.|+..|+.
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999998864
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=7.3e-32 Score=206.93 Aligned_cols=154 Identities=18% Similarity=0.171 Sum_probs=135.9
Q ss_pred HHHHhccCCCC-----ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccc---------hhh
Q 036068 25 ARQCFDQMPER-----DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRA---------LDL 90 (178)
Q Consensus 25 a~~~~~~m~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~---------~~~ 90 (178)
+..+.++++++ ....++.+|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 45555666542 3446889999999999999999999999999999999999999999987654 678
Q ss_pred HHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc------------cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 91 GEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 91 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
|.++|++|.+.|+.||..||+++|.+|++.|++++|. ||..+||+||.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999997 8999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHHhhhhcC
Q 036068 159 ASIKPDEVAYVGVLSACTHN 178 (178)
Q Consensus 159 ~g~~p~~~t~~~li~a~~~~ 178 (178)
.|+.||..||++||++|+++
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHhhC
Confidence 99999999999999999864
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.91 E-value=1.5e-24 Score=173.79 Aligned_cols=138 Identities=11% Similarity=0.052 Sum_probs=120.6
Q ss_pred hHHHHHHHHHHhcCChhHHHHHhccCC-------CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHH
Q 036068 7 ISWTAIVSRYINRGQVDIARQCFDQMP-------ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79 (178)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 79 (178)
.+||++|++|++.|++++|.++|++|. .||+.|||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 489999999999999999999998764 4899999999999999999999999999999999999999999999
Q ss_pred HHhccccch-hhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-------c------chhhHHHHHHHHHhcC
Q 036068 80 TARANLRAL-DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-------K------DKFSWTTMIVGLAISG 144 (178)
Q Consensus 80 ~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-------~------~~~~~~~li~~~~~~~ 144 (178)
.++|+.|+. ++|.+++++|.+.|+.||..+|+.++.+..+.+-++.+. | .+.+.+.|...|.+.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 999999985 789999999999999999999998887777765555443 2 2455566666676655
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.91 E-value=3.6e-24 Score=171.58 Aligned_cols=118 Identities=10% Similarity=0.060 Sum_probs=103.5
Q ss_pred hhHHHHHHHHHhhcCChhHHHHHHHHhH---hCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHH
Q 036068 37 YVLWTAMIDGYLRVNRFREALTLFQEMQ---TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNAL 113 (178)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 113 (178)
..|||+||++|++.|++++|.++|++|. ..|+.||..|||+||++||+.|++++|.++|++|.+.|+.||..|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT---- 202 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS---- 202 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH----
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH----
Confidence 3489999999999999999999998876 458999999999999999999999999999999999999985555
Q ss_pred HHHHHhcCChhhhccchhhHHHHHHHHHhcCCh-hHHHHHHHHHHHcCCCCChhHHHHHHhhhhc
Q 036068 114 IDMYCICADVEKAQKDKFSWTTMIVGLAISGNG-DKALDMFSQMLRASIKPDEVAYVGVLSACTH 177 (178)
Q Consensus 114 l~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~t~~~li~a~~~ 177 (178)
||+||.++|+.|+. ++|.++|++|.+.|+.||..||++++.++.+
T Consensus 203 -------------------YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 203 -------------------YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp -------------------HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred -------------------HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 55566666666663 6899999999999999999999988877643
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.78 E-value=1.2e-17 Score=129.99 Aligned_cols=172 Identities=15% Similarity=-0.003 Sum_probs=122.3
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC-------------------------------------CChhHHHHHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE-------------------------------------RDYVLWTAMIDG 46 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-------------------------------------~~~~~~~~li~~ 46 (178)
+++.+|+.++.++.+.|++++|.++|+++.+ .+..+|+.+...
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 382 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIY 382 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 5666777777777777777777777776631 245566667777
Q ss_pred HhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhh
Q 036068 47 YLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126 (178)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 126 (178)
|.+.|++++|.++|+++.+.. +.+..+|+.++.++.+.|++++|.++|+.+.+.+. .+..+|+.+...|.+.|++++|
T Consensus 383 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 383 YLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777766543 23456777777777777777777777777766543 3567777777777777777777
Q ss_pred c-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC--hhHHHHHHhhhhc
Q 036068 127 Q-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRA----SIKPD--EVAYVGVLSACTH 177 (178)
Q Consensus 127 ~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~--~~t~~~li~a~~~ 177 (178)
. .+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 461 NEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 6 35777888888888888888888888888765 66777 5677777777653
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.77 E-value=2.4e-17 Score=128.28 Aligned_cols=170 Identities=14% Similarity=0.124 Sum_probs=112.1
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 80 (178)
.++.+|+.+...|.+.|++++|.++|+++.+ .+..+|+.++..|.+.|++++|.++|+++.+.+ +.+..+|..+..
T Consensus 371 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 449 (597)
T 2xpi_A 371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGM 449 (597)
T ss_dssp TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHH
Confidence 4566677777777777777777777776542 356677777777777777777777777776654 335666777777
Q ss_pred HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------------cc--hhhHHHHHHHHHh
Q 036068 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------------KD--KFSWTTMIVGLAI 142 (178)
Q Consensus 81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------------~~--~~~~~~li~~~~~ 142 (178)
+|.+.|++++|.++|+.+.+... .++.+|+.+...|.+.|++++|. |+ ..+|+.+...|.+
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 77777777777777777666543 25666777777777777776665 22 4566677777777
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhHHHHHHhhhh
Q 036068 143 SGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176 (178)
Q Consensus 143 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~ 176 (178)
.|++++|.++|+++.+.+ +.+..+|..+..+|.
T Consensus 529 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~ 561 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLLS-TNDANVHTAIALVYL 561 (597)
T ss_dssp TTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 777777777777766543 235566666665554
No 7
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.50 E-value=4.1e-12 Score=86.60 Aligned_cols=156 Identities=8% Similarity=-0.065 Sum_probs=123.9
Q ss_pred CcchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHH
Q 036068 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79 (178)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 79 (178)
+.++..|..+...+.+.|++++|.+.|++..+ .+...+..+...+...|++++|.+.+++..+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 45667788888889999999999998887653 367788888888888999999999998887764 33567788888
Q ss_pred HHhccc-cchhhHHHHHHHHHHhCccc-chHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCCh
Q 036068 80 TARANL-RALDLGEWIKTYIDKNKVKN-DIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNG 146 (178)
Q Consensus 80 ~~~~~~-~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~ 146 (178)
..+... |++++|...++.+.+.+..| +...+..+...+.+.|++++|. .+...+..+...+.+.|++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 888888 99999999998888732222 3677888888888899988887 2467778888888888999
Q ss_pred hHHHHHHHHHHHc
Q 036068 147 DKALDMFSQMLRA 159 (178)
Q Consensus 147 ~~a~~~~~~m~~~ 159 (178)
++|.+++++..+.
T Consensus 164 ~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 164 GDADYYFKKYQSR 176 (225)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999888888764
No 8
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.49 E-value=5.2e-12 Score=86.79 Aligned_cols=169 Identities=14% Similarity=0.030 Sum_probs=140.5
Q ss_pred CCCcchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHH
Q 036068 1 MKNKDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVS 77 (178)
Q Consensus 1 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 77 (178)
|| +++..+..+-..+.+.|++++|...|++..+ .+...+..+-..+.+.|++++|...|++..+.. +-+...+..
T Consensus 1 ~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 78 (217)
T 2pl2_A 1 MQ-TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMV 78 (217)
T ss_dssp ----CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 55 7778889999999999999999999998653 377889999999999999999999999998875 335678888
Q ss_pred HHHHhccc-----------cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cchhhHHHH
Q 036068 78 ILTARANL-----------RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KDKFSWTTM 136 (178)
Q Consensus 78 ll~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~~~~~~~l 136 (178)
+-.++.+. |++++|...++...+..+. +...+..+-..|...|++++|. .+...+..+
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 89999999 9999999999999987643 5778889999999999999987 356778889
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCC-hhHHHHHHhh
Q 036068 137 IVGLAISGNGDKALDMFSQMLRASIKPD-EVAYVGVLSA 174 (178)
Q Consensus 137 i~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~li~a 174 (178)
...+...|++++|...|++..+. .|+ ...+..+-..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~ 194 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASA 194 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHH
Confidence 99999999999999999999875 454 3444444333
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.49 E-value=3.8e-12 Score=94.22 Aligned_cols=120 Identities=12% Similarity=0.002 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068 37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116 (178)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 116 (178)
..++..+...|.+.|++++|.+.|+++.+.+ +.+..++..+..++.+.|++++|.+.++.+.+.. +.+..++..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 3344444444444444444544444444432 1123344444444555555555555554444433 2234444455555
Q ss_pred HHhcCChhhhc----------c-chhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 117 YCICADVEKAQ----------K-DKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 117 ~~~~~~~~~a~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
+.+.|++++|. | +..++..+...+.+.|++++|.+.|+++.+
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555554443 1 234455555555555555555555555543
No 10
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.49 E-value=7e-12 Score=87.28 Aligned_cols=152 Identities=9% Similarity=-0.074 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR 82 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 82 (178)
+..|..+...+...|++++|.+.|++..+ .+...+..+...|...|++++|.+.|++..+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 34455555555555555555555555432 244455555555555555555555555554442 12344555555555
Q ss_pred ccccchhhHHHHHHHHHHhCccc-chHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHH
Q 036068 83 ANLRALDLGEWIKTYIDKNKVKN-DIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKAL 150 (178)
Q Consensus 83 ~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~ 150 (178)
.+.|++++|.++++.+.+.+..| +...+..+...|.+.|++++|. .+...+..+...+...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555554421122 3444555555555555555554 13444445555555555555555
Q ss_pred HHHHHHHH
Q 036068 151 DMFSQMLR 158 (178)
Q Consensus 151 ~~~~~m~~ 158 (178)
+++++..+
T Consensus 196 ~~~~~~~~ 203 (252)
T 2ho1_A 196 QYYDLFAQ 203 (252)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 55555443
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.48 E-value=2.1e-12 Score=97.08 Aligned_cols=153 Identities=14% Similarity=0.073 Sum_probs=80.8
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 81 (178)
++..|..+...+.+.|++++|..+|+++.+ .+...|..+...|...|++++|...|+++.+.+ +.+...+..+..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 344555555666666666666666655432 244455555555555555555555555554443 1234444555555
Q ss_pred hccccchhhHHHHHHHHHHhCc------------------------------------------------ccchHHHHHH
Q 036068 82 RANLRALDLGEWIKTYIDKNKV------------------------------------------------KNDIFAGNAL 113 (178)
Q Consensus 82 ~~~~~~~~~a~~~~~~m~~~~~------------------------------------------------~~~~~~~~~l 113 (178)
+.+.|++++|.+.++.+.+... +.+..++..+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 183 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELR 183 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 5555555555555555444321 1234445555
Q ss_pred HHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 114 IDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 114 l~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
...|.+.|++++|. .+..+|..+...+...|++++|.+.|+++.+
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555554 2455566666666666666666666666654
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.47 E-value=7.2e-12 Score=94.17 Aligned_cols=121 Identities=11% Similarity=-0.002 Sum_probs=91.8
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCC--C-Ch---hHHHHHHHH------------HhhcCChhHHHHHHHHhHhC
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPE--R-DY---VLWTAMIDG------------YLRVNRFREALTLFQEMQTS 66 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~---~~~~~li~~------------~~~~~~~~~a~~~~~~m~~~ 66 (178)
+..+|..+...+.+.|++++|.+.|+++.+ | +. ..+..+... +.+.|++++|...|+++.+.
T Consensus 93 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 172 (450)
T 2y4t_A 93 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV 172 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455666777777777777777777776653 2 33 555555443 67777777777777777665
Q ss_pred CCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 67 NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 67 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
. +.+...+..+..++.+.|++++|.+.++.+.+... .+..++..+...|.+.|++++|.
T Consensus 173 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~ 231 (450)
T 2y4t_A 173 C-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSL 231 (450)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHH
T ss_pred C-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHH
Confidence 4 34667888889999999999999999999988753 46889999999999999999986
No 13
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.47 E-value=1.8e-11 Score=80.81 Aligned_cols=152 Identities=9% Similarity=0.018 Sum_probs=133.4
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR 82 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 82 (178)
...|..+...+...|++++|.+.++++.+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 44578889999999999999999999875 377788899999999999999999999988764 34677888899999
Q ss_pred ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHH
Q 036068 83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALD 151 (178)
Q Consensus 83 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~ 151 (178)
...|++++|.+.++...+... .+...+..+...+.+.|++++|. .+...+..+...+...|++++|.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999988754 46788889999999999999987 356788999999999999999999
Q ss_pred HHHHHHHc
Q 036068 152 MFSQMLRA 159 (178)
Q Consensus 152 ~~~~m~~~ 159 (178)
.+++..+.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99998864
No 14
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.47 E-value=1e-11 Score=91.87 Aligned_cols=85 Identities=13% Similarity=-0.042 Sum_probs=40.6
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHH
Q 036068 73 FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLA 141 (178)
Q Consensus 73 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~ 141 (178)
.++..+..++.+.|++++|.+.++.+.+..+. ++.++..+...+.+.|++++|. .+..+|+.+...+.
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence 34444444444444444444444444443321 2334444444455555544444 23445555555555
Q ss_pred hcCChhHHHHHHHHHHH
Q 036068 142 ISGNGDKALDMFSQMLR 158 (178)
Q Consensus 142 ~~~~~~~a~~~~~~m~~ 158 (178)
+.|++++|.+.++++.+
T Consensus 317 ~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALE 333 (388)
T ss_dssp TTTCHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHh
Confidence 55555555555555544
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.45 E-value=3.5e-14 Score=106.34 Aligned_cols=155 Identities=13% Similarity=0.119 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccc
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL 85 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 85 (178)
+.+|..+..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|.+.++...+. .+++.+.+.++.+|.+.
T Consensus 32 ~~vWs~La~A~l~~g~~~eAIdsfik--a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Kl 107 (449)
T 1b89_A 32 PAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKT 107 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHh
Confidence 35899999999999999999999975 467779999999999999999999977766553 45678888999999999
Q ss_pred cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc---cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 036068 86 RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ---KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIK 162 (178)
Q Consensus 86 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 162 (178)
|+++++.++++ .|+..+|+.+...|...|.+++|. .....|..++.++.+.|++++|.+.++++
T Consensus 108 g~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA------ 174 (449)
T 1b89_A 108 NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA------ 174 (449)
T ss_dssp -CHHHHTTTTT-------CC----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHH------
T ss_pred CCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHc------
Confidence 99999888874 366779999999999999999998 56678999999999999999999999987
Q ss_pred CChhHHHHHHhhhhc
Q 036068 163 PDEVAYVGVLSACTH 177 (178)
Q Consensus 163 p~~~t~~~li~a~~~ 177 (178)
-+..+|..++.+|..
T Consensus 175 ~~~~~Wk~v~~aCv~ 189 (449)
T 1b89_A 175 NSTRTWKEVCFACVD 189 (449)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHH
Confidence 367888888888853
No 16
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.45 E-value=6.6e-12 Score=92.13 Aligned_cols=167 Identities=10% Similarity=0.075 Sum_probs=99.2
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR 82 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 82 (178)
...|..+...+.+.|++++|.+.|+++.+ .+...|..+...|.+.|++++|.+.|++..+.. +.+..++..+..++
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 33455555555555555555555555432 244455555555555555555555555544432 12344444444445
Q ss_pred ccccchhhHHH--------------------------------------------HHHHHHHhCcc-cchHHHHHHHHHH
Q 036068 83 ANLRALDLGEW--------------------------------------------IKTYIDKNKVK-NDIFAGNALIDMY 117 (178)
Q Consensus 83 ~~~~~~~~a~~--------------------------------------------~~~~m~~~~~~-~~~~~~~~ll~~~ 117 (178)
.+.|++++|.. +++.+.+..+. .++.++..+...|
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 55555444444 44444444322 1567788888888
Q ss_pred HhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-hhHHHHHHhhh
Q 036068 118 CICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPD-EVAYVGVLSAC 175 (178)
Q Consensus 118 ~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~li~a~ 175 (178)
.+.|++++|. .+..+|+.+...+.+.|++++|.+.|++..+. .|+ ...+..+-.+|
T Consensus 224 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISC 291 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHH
Confidence 8888888887 35778888888888899999999999888875 344 45555554443
No 17
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.45 E-value=1.2e-11 Score=82.26 Aligned_cols=160 Identities=11% Similarity=0.051 Sum_probs=137.9
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 81 (178)
++.+|..+-..+.+.|++++|.+.|++..+ .+...|..+...|.+.|++++|...+++..... .-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 567899999999999999999999998753 378889999999999999999999999987765 3356677778888
Q ss_pred hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHH
Q 036068 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKAL 150 (178)
Q Consensus 82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~ 150 (178)
+...++++.+...+....+..+ .+...+..+-..|.+.|++++|. .+...|..+...+.+.|++++|.
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 8999999999999999888764 36788899999999999999998 36778999999999999999999
Q ss_pred HHHHHHHHcCCCCChhHH
Q 036068 151 DMFSQMLRASIKPDEVAY 168 (178)
Q Consensus 151 ~~~~~m~~~g~~p~~~t~ 168 (178)
+.|++.++. .|+...|
T Consensus 162 ~~~~~al~~--~p~~a~~ 177 (184)
T 3vtx_A 162 KYFKKALEK--EEKKAKY 177 (184)
T ss_dssp HHHHHHHHT--THHHHHH
T ss_pred HHHHHHHhC--CccCHHH
Confidence 999999874 4655444
No 18
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.44 E-value=6.6e-12 Score=87.43 Aligned_cols=167 Identities=11% Similarity=0.029 Sum_probs=141.9
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCC-cHHHHHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG-DEFTIVSIL 79 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll 79 (178)
.+...|..+...+.+.|++++|.+.|++..+ .+...+..+...|...|++++|.+.|++..+.+..| +...+..+.
T Consensus 69 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la 148 (252)
T 2ho1_A 69 SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLG 148 (252)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHH
Confidence 4667889999999999999999999998753 377889999999999999999999999998743344 567888889
Q ss_pred HHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhH
Q 036068 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDK 148 (178)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~ 148 (178)
.++.+.|++++|.+.++...+... .+...+..+...|.+.|++++|. .+...+..+...+...|++++
T Consensus 149 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (252)
T 2ho1_A 149 LVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDT 227 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHH
Confidence 999999999999999999988764 35788999999999999999997 356778888899999999999
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHh
Q 036068 149 ALDMFSQMLRASIKPDEVAYVGVLS 173 (178)
Q Consensus 149 a~~~~~~m~~~g~~p~~~t~~~li~ 173 (178)
|.++++++.+. .|+...+..++.
T Consensus 228 A~~~~~~~~~~--~p~~~~~~~~l~ 250 (252)
T 2ho1_A 228 AASYGLQLKRL--YPGSLEYQEFQA 250 (252)
T ss_dssp HHHHHHHHHHH--CTTSHHHHHHHT
T ss_pred HHHHHHHHHHH--CCCCHHHHHHHh
Confidence 99999999875 576666555543
No 19
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.44 E-value=2.4e-11 Score=83.85 Aligned_cols=158 Identities=16% Similarity=0.136 Sum_probs=122.1
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 80 (178)
.+...|..+...+.+.|++++|.+.|++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 55 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 133 (243)
T 2q7f_A 55 EDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGT 133 (243)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4566777788888888888888888887643 366777888888888888888888888877764 335667777888
Q ss_pred HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHH
Q 036068 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKA 149 (178)
Q Consensus 81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a 149 (178)
.+.+.|++++|...++...+... .+...+..+...+.+.|++++|. .+..+|..+...+.+.|++++|
T Consensus 134 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 212 (243)
T 2q7f_A 134 VLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA 212 (243)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHH
Confidence 88888888888888888877653 35677788888888888888876 3566778888888888888888
Q ss_pred HHHHHHHHHcCCCCCh
Q 036068 150 LDMFSQMLRASIKPDE 165 (178)
Q Consensus 150 ~~~~~~m~~~g~~p~~ 165 (178)
.+.+++..+. .|+.
T Consensus 213 ~~~~~~~~~~--~p~~ 226 (243)
T 2q7f_A 213 LEMLDKAIDI--QPDH 226 (243)
T ss_dssp HHHHHHHHHH--CTTC
T ss_pred HHHHHHHHcc--Ccch
Confidence 8888888764 3544
No 20
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.42 E-value=7e-11 Score=84.80 Aligned_cols=154 Identities=14% Similarity=0.079 Sum_probs=106.0
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHH---HHHHHHH
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFT---IVSILTA 81 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~ll~~ 81 (178)
++..+..+...+.+.|++++|.+.+++ ..+...+..+...|.+.|++++|.+.|+++.+.. |+... ...++..
T Consensus 100 ~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l 175 (291)
T 3mkr_A 100 NTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSL 175 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHH
Confidence 344556666777777888888877777 3466777777778888888888888888877664 44321 1223344
Q ss_pred hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhH-H
Q 036068 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDK-A 149 (178)
Q Consensus 82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~-a 149 (178)
+...|++++|..+|+.+.+.. +.++..++.+...+.+.|++++|. .+..++..++..+...|+.++ +
T Consensus 176 ~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa 254 (291)
T 3mkr_A 176 AAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVT 254 (291)
T ss_dssp HHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred HhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHH
Confidence 445577888888888877764 346777777888888888888876 256677777777777787765 5
Q ss_pred HHHHHHHHHcCCCCCh
Q 036068 150 LDMFSQMLRASIKPDE 165 (178)
Q Consensus 150 ~~~~~~m~~~g~~p~~ 165 (178)
.++++++++. .|+.
T Consensus 255 ~~~~~~~~~~--~P~~ 268 (291)
T 3mkr_A 255 NRYLSQLKDA--HRSH 268 (291)
T ss_dssp HHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHh--CCCC
Confidence 6777777754 3544
No 21
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.42 E-value=1.6e-11 Score=88.12 Aligned_cols=164 Identities=9% Similarity=0.039 Sum_probs=107.7
Q ss_pred CcchhHHHHHHHHHHhcCChhHHHHHhccCC----CC-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHH
Q 036068 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMP----ER-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVS 77 (178)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 77 (178)
+|+..++..+...+.+.++.++|.+.++++. .| +...+..+-..+...|++++|.+.+++ ..+...+..
T Consensus 62 ~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~ 135 (291)
T 3mkr_A 62 APELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAM 135 (291)
T ss_dssp CHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHH
T ss_pred ChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHH
Confidence 3566667777777777777777777777652 24 344455555677777777777777766 345667777
Q ss_pred HHHHhccccchhhHHHHHHHHHHhCcccch-HHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCC
Q 036068 78 ILTARANLRALDLGEWIKTYIDKNKVKNDI-FAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGN 145 (178)
Q Consensus 78 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~ 145 (178)
+...+.+.|++++|.+.++.+.+..+.... ......+..+...|++++|. .+...|+.+...+.+.|+
T Consensus 136 l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 215 (291)
T 3mkr_A 136 TVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR 215 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Confidence 777788888888888888887776522110 11122333344457777776 367778888888888888
Q ss_pred hhHHHHHHHHHHHcCCCC-ChhHHHHHHhh
Q 036068 146 GDKALDMFSQMLRASIKP-DEVAYVGVLSA 174 (178)
Q Consensus 146 ~~~a~~~~~~m~~~g~~p-~~~t~~~li~a 174 (178)
+++|.+.|++.++. .| +..++..+...
T Consensus 216 ~~eA~~~l~~al~~--~p~~~~~l~~l~~~ 243 (291)
T 3mkr_A 216 WEAAEGVLQEALDK--DSGHPETLINLVVL 243 (291)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 88888888888764 34 44555555433
No 22
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.42 E-value=5.9e-11 Score=80.80 Aligned_cols=167 Identities=14% Similarity=0.017 Sum_probs=140.1
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhc-CChhHHHHHHHHhHhCCCCCc-HHHHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRV-NRFREALTLFQEMQTSNIMGD-EFTIVSI 78 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~-~~~~~~l 78 (178)
.+...|..+...+...|++++|.+.+++..+ .+...+..+...+... |++++|...+++..+.+..|+ ...+..+
T Consensus 40 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 119 (225)
T 2vq2_A 40 KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNK 119 (225)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHH
Confidence 4567889999999999999999999998753 4777899999999999 999999999999988433333 6788889
Q ss_pred HHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------c--chhhHHHHHHHHHhcCCh
Q 036068 79 LTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------K--DKFSWTTMIVGLAISGNG 146 (178)
Q Consensus 79 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~--~~~~~~~li~~~~~~~~~ 146 (178)
..++.+.|++++|...++...+.... +...+..+...+.+.|++++|. | +...+..+...+...|+.
T Consensus 120 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (225)
T 2vq2_A 120 GICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNA 198 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcH
Confidence 99999999999999999999887643 5788999999999999999987 4 456677777888999999
Q ss_pred hHHHHHHHHHHHcCCCCChhHHHHHHh
Q 036068 147 DKALDMFSQMLRASIKPDEVAYVGVLS 173 (178)
Q Consensus 147 ~~a~~~~~~m~~~g~~p~~~t~~~li~ 173 (178)
+++..+++.+.+. .|+...+..++.
T Consensus 199 ~~a~~~~~~~~~~--~p~~~~~~~~l~ 223 (225)
T 2vq2_A 199 QAAYEYEAQLQAN--FPYSEELQTVLT 223 (225)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHC
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHhc
Confidence 9999999998864 577766665553
No 23
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.39 E-value=1.1e-11 Score=85.62 Aligned_cols=170 Identities=12% Similarity=0.031 Sum_probs=124.1
Q ss_pred CcchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHH
Q 036068 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79 (178)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 79 (178)
..+...|..+...+.+.|++++|...|++..+ .+...+..+...+...|++++|.+.|++..+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 45566788889999999999999999998753 377888899999999999999999999988764 34678888999
Q ss_pred HHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhH
Q 036068 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDK 148 (178)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~ 148 (178)
..+.+.|++++|.+.++...+... .+...+..+...+.+.|++++|. .+...+..+...+.+.|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999988764 35778999999999999999997 367788889999999999999
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHhhh
Q 036068 149 ALDMFSQMLRASIKPDEVAYVGVLSAC 175 (178)
Q Consensus 149 a~~~~~~m~~~g~~p~~~t~~~li~a~ 175 (178)
|.+.+++..+.. +.+...+..+...|
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~ 203 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTY 203 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 999999998752 23455555555444
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.38 E-value=7.4e-11 Score=86.31 Aligned_cols=169 Identities=12% Similarity=0.078 Sum_probs=114.2
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 81 (178)
+...|..+...+.+.|++++|...|+++.+ .+...|..+...+.+.|++++|.+.|++..+.. +.+..++..+..+
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~ 141 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVS 141 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 345566677777777777777777776642 355667777777777777777777777776654 2355666667777
Q ss_pred hccccchhhHHHHHHHHHHhCc-----------------------------------------------cc---chHHHH
Q 036068 82 RANLRALDLGEWIKTYIDKNKV-----------------------------------------------KN---DIFAGN 111 (178)
Q Consensus 82 ~~~~~~~~~a~~~~~~m~~~~~-----------------------------------------------~~---~~~~~~ 111 (178)
+.+.|++++|...++.+.+... .| +..++.
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 221 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 221 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHH
Confidence 7777777666666665554321 11 466777
Q ss_pred HHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhh
Q 036068 112 ALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175 (178)
Q Consensus 112 ~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~ 175 (178)
.+...|.+.|++++|. .+...|..+...+.+.|++++|.+.|++..+.. +.+...+..+-..|
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 295 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISC 295 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 8888888888888887 256778888888888888888888888887642 22344554444443
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.38 E-value=6.6e-12 Score=94.13 Aligned_cols=136 Identities=9% Similarity=-0.008 Sum_probs=76.4
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 84 (178)
++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|.++ ..|..+..++.+
T Consensus 93 ~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~ 160 (449)
T 1b89_A 93 ESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVH 160 (449)
T ss_dssp ----------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHH
Confidence 34556667777777777777666664 356667777777777777777777777765 367777778888
Q ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-------cchhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 036068 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-------KDKFSWTTMIVGLAISGNGDKALDMFSQML 157 (178)
Q Consensus 85 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 157 (178)
.|++++|.+.+... .++.+|..++.++...|+++.|. .+..-...++..|.+.|++++|..+++..+
T Consensus 161 Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 161 LGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp TTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 88888877777766 26778888888888888888887 122223457778888888888888888876
Q ss_pred H
Q 036068 158 R 158 (178)
Q Consensus 158 ~ 158 (178)
.
T Consensus 235 ~ 235 (449)
T 1b89_A 235 G 235 (449)
T ss_dssp T
T ss_pred C
Confidence 4
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.37 E-value=2e-11 Score=89.50 Aligned_cols=155 Identities=13% Similarity=-0.017 Sum_probs=125.3
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCC-------------
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN------------- 67 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------------- 67 (178)
.+..+|..+...+.+.|++++|.+.|++..+ .+...|..+...|...|++++|...|++..+..
T Consensus 97 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 176 (365)
T 4eqf_A 97 GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGS 176 (365)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccc
Confidence 4566777788888888888888888877653 356677777777777777777777777764421
Q ss_pred -----------------------------CCC---cHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068 68 -----------------------------IMG---DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID 115 (178)
Q Consensus 68 -----------------------------~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 115 (178)
..| +..++..+...+.+.|++++|...++...+..+ .+..+|..+..
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 255 (365)
T 4eqf_A 177 PGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGA 255 (365)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 012 577888999999999999999999999998764 36889999999
Q ss_pred HHHhcCChhhhc----------c-chhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 116 MYCICADVEKAQ----------K-DKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 116 ~~~~~~~~~~a~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
.|.+.|++++|. | +..+|..+...|.+.|++++|.+.|++..+.
T Consensus 256 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 256 TLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999998 3 5788999999999999999999999999864
No 27
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.36 E-value=7.5e-11 Score=84.81 Aligned_cols=152 Identities=14% Similarity=0.020 Sum_probs=83.6
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR 82 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 82 (178)
...|..+...+...|++++|.+.|++..+ .+...+..+...|...|++++|.+.|++..+.. +.+...+..+...+
T Consensus 125 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 203 (330)
T 3hym_B 125 GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVA 203 (330)
T ss_dssp THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 34455555555555555555555554432 133444455555555666666666666555543 22345555566666
Q ss_pred ccccchhhHHHHHHHHHHhC--------cccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhc
Q 036068 83 ANLRALDLGEWIKTYIDKNK--------VKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAIS 143 (178)
Q Consensus 83 ~~~~~~~~a~~~~~~m~~~~--------~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~ 143 (178)
.+.|++++|...++...+.. .+....++..+...|.+.|++++|. .+...|..+...+.+.
T Consensus 204 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 283 (330)
T 3hym_B 204 FQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLM 283 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHh
Confidence 66666666666665555431 1223455666666666666666655 2455556666666666
Q ss_pred CChhHHHHHHHHHHH
Q 036068 144 GNGDKALDMFSQMLR 158 (178)
Q Consensus 144 ~~~~~a~~~~~~m~~ 158 (178)
|++++|.+.|++..+
T Consensus 284 g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 284 GNFENAVDYFHTALG 298 (330)
T ss_dssp TCHHHHHHHHHTTTT
T ss_pred ccHHHHHHHHHHHHc
Confidence 666666666666554
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.35 E-value=9.3e-11 Score=85.78 Aligned_cols=156 Identities=14% Similarity=0.013 Sum_probs=128.7
Q ss_pred CcchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCC-----------
Q 036068 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI----------- 68 (178)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----------- 68 (178)
+.+..+|..+...+.+.|++++|.+.|++..+ .+...+..+...|...|++++|.+.|+++.+...
T Consensus 95 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 174 (368)
T 1fch_A 95 PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEE 174 (368)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC----
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 34566788888888888998888888887653 3677788888888888888888888877654321
Q ss_pred ------------------------------------CC---cHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHH
Q 036068 69 ------------------------------------MG---DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFA 109 (178)
Q Consensus 69 ------------------------------------~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 109 (178)
.| +..++..+...+.+.|++++|...++...+... .+..+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~ 253 (368)
T 1fch_A 175 GAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLL 253 (368)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHH
Confidence 12 467888899999999999999999999988753 35788
Q ss_pred HHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 110 GNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 110 ~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
+..+...|.+.|++++|. .+...+..+...+.+.|++++|.+.|++..+.
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999997 35778999999999999999999999999864
No 29
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.33 E-value=3e-11 Score=82.98 Aligned_cols=152 Identities=13% Similarity=0.047 Sum_probs=120.3
Q ss_pred CcchhHHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhc-----------CChhHHHHHHHHhHhCCC
Q 036068 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRV-----------NRFREALTLFQEMQTSNI 68 (178)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~~~ 68 (178)
+.++..|..+...+.+.|++++|...|++..+ | +...+..+-..+.+. |++++|...|++..+..
T Consensus 36 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~- 114 (217)
T 2pl2_A 36 PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN- 114 (217)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-
Confidence 45677889999999999999999999998753 4 677888899999999 99999999999988864
Q ss_pred CCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------c-chhhHHHHH
Q 036068 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------K-DKFSWTTMI 137 (178)
Q Consensus 69 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~-~~~~~~~li 137 (178)
+-+...+..+-.++.+.|++++|...++...+.. .++..+..+-..|...|++++|. | +...+..+.
T Consensus 115 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la 192 (217)
T 2pl2_A 115 PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYA 192 (217)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 2356788889999999999999999999999988 67889999999999999999997 3 677888899
Q ss_pred HHHHhcCChhHHHHHHHHHH
Q 036068 138 VGLAISGNGDKALDMFSQML 157 (178)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~m~ 157 (178)
..+.+.|++++|.+.|++..
T Consensus 193 ~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 193 SALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHTC---------------
T ss_pred HHHHHccCHHHHHHHHHHHh
Confidence 99999999999999998754
No 30
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.33 E-value=2.5e-10 Score=82.02 Aligned_cols=153 Identities=15% Similarity=0.078 Sum_probs=95.3
Q ss_pred chhHHHHHHHHHHhcC-ChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068 5 DVISWTAIVSRYINRG-QVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 80 (178)
+...|..+...+...| ++++|.+.|++..+ .+...|..+...+...|++++|.+.|++..+.. +.+...+..+..
T Consensus 89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 167 (330)
T 3hym_B 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGL 167 (330)
T ss_dssp STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHH
Confidence 4455666666666666 66666666665432 245566666666666666666666666665543 223445555666
Q ss_pred HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc--------------------cchhhHHHHHHHH
Q 036068 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------------------KDKFSWTTMIVGL 140 (178)
Q Consensus 81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--------------------~~~~~~~~li~~~ 140 (178)
.+...|++++|.+.++...+... .+..++..+...|.+.|++++|. .+...|..+...+
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 66666777777777766665542 24566666666677777776665 0134666667777
Q ss_pred HhcCChhHHHHHHHHHHHc
Q 036068 141 AISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 141 ~~~~~~~~a~~~~~~m~~~ 159 (178)
.+.|++++|.+.+++..+.
T Consensus 247 ~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhh
Confidence 7777777777777776654
No 31
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.32 E-value=1.3e-10 Score=80.67 Aligned_cols=153 Identities=9% Similarity=0.003 Sum_probs=93.9
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCC--C-C-------hhHHHHHHHHHhhcCChhHHHHHHHHhHhCC-------
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPE--R-D-------YVLWTAMIDGYLRVNRFREALTLFQEMQTSN------- 67 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------- 67 (178)
+...|..+...+...|++++|.+.+++..+ | + ...|..+...+.+.|++++|...|++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 116 (258)
T 3uq3_A 37 DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILT 116 (258)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHH
Confidence 345566666666666666666666665542 1 1 4566666666666777777776666665521
Q ss_pred -----------------C-CCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc--
Q 036068 68 -----------------I-MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-- 127 (178)
Q Consensus 68 -----------------~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-- 127 (178)
. +.+...+..+...+.+.|++++|...++...+.... +..++..+...|.+.|++++|.
T Consensus 117 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 195 (258)
T 3uq3_A 117 KLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIAD 195 (258)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHH
Confidence 1 112345555666666666777777777666665432 4566666666667777766665
Q ss_pred ---------cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 128 ---------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 128 ---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
.+...|..+...+.+.|++++|.+.|++..+
T Consensus 196 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 196 CNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2355666666677777777777777766654
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.31 E-value=1.7e-10 Score=80.14 Aligned_cols=170 Identities=13% Similarity=0.023 Sum_probs=138.1
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCC--CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCC--CCc----HHHHH
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI--MGD----EFTIV 76 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~~~~~ 76 (178)
....|..+...+.+.|++++|.+.|++..+ .+...|..+...+...|++++|.+.|++..+..- .++ ..++.
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456788899999999999999999987642 6788999999999999999999999999876431 112 57888
Q ss_pred HHHHHhccccchhhHHHHHHHHHHhC-------------------------cccchHHHHHHHHHHHhcCChhhhc----
Q 036068 77 SILTARANLRALDLGEWIKTYIDKNK-------------------------VKNDIFAGNALIDMYCICADVEKAQ---- 127 (178)
Q Consensus 77 ~ll~~~~~~~~~~~a~~~~~~m~~~~-------------------------~~~~~~~~~~ll~~~~~~~~~~~a~---- 127 (178)
.+..++.+.|++++|...++...+.. .+.+...+..+...+...|++++|.
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 163 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYT 163 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999999999999888742 1234667888888999999999997
Q ss_pred -------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhh
Q 036068 128 -------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175 (178)
Q Consensus 128 -------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~ 175 (178)
.+...|..+...+.+.|++++|.+.+++..+.. +.+...+..+-..+
T Consensus 164 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 217 (258)
T 3uq3_A 164 EMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 217 (258)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHH
Confidence 367788999999999999999999999998753 22345555554443
No 33
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.29 E-value=1.4e-10 Score=92.78 Aligned_cols=153 Identities=9% Similarity=-0.011 Sum_probs=135.3
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 80 (178)
-++..|+.+-..+.+.|++++|.+.|++..+ | +...|..|-..|.+.|++++|.+.|++..+.. +-+...|..+-.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3467899999999999999999999998753 3 77899999999999999999999999988864 235788999999
Q ss_pred HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHH
Q 036068 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKA 149 (178)
Q Consensus 81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a 149 (178)
++.+.|++++|.+.|++..+.... +...|+.+-..|.+.|++++|. .+...|..+...+...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 999999999999999999987643 5788999999999999999998 3678899999999999999999
Q ss_pred HHHHHHHHH
Q 036068 150 LDMFSQMLR 158 (178)
Q Consensus 150 ~~~~~~m~~ 158 (178)
.+.+++.++
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888764
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.29 E-value=5.3e-10 Score=80.21 Aligned_cols=153 Identities=12% Similarity=-0.025 Sum_probs=79.6
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCC-------------
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI------------- 68 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------------- 68 (178)
+...|..+...+.+.|++++|.+.|++..+ .+...+..+...+...|++++|.+.+++..+...
T Consensus 54 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (327)
T 3cv0_A 54 REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD 133 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH
Confidence 344555556666666666666666665432 2455555566666666666666666655543210
Q ss_pred -----------------------------------CCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHH
Q 036068 69 -----------------------------------MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNAL 113 (178)
Q Consensus 69 -----------------------------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 113 (178)
+.+...+..+...+.+.|++++|...++...+... .+..++..+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l 212 (327)
T 3cv0_A 134 VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKL 212 (327)
T ss_dssp ------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHH
Confidence 11233444444445555555555555555544432 234445555
Q ss_pred HHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 114 IDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 114 l~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
...|.+.|++++|. .+...|..+...+.+.|++++|.+.+++..+
T Consensus 213 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 213 GATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55555555555554 2344555555555566666666666655554
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.27 E-value=6.6e-10 Score=79.72 Aligned_cols=169 Identities=11% Similarity=0.037 Sum_probs=127.8
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 81 (178)
+...|..+...+.+.|++++|..+|+++.+ .+...+..+...+...|++++|.+.|++..+.. +.+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 556677889999999999999999998753 377788899999999999999999999998864 3466788888888
Q ss_pred hccccchhhHHHHHHHHHHhCc------------------------------------------------ccchHHHHHH
Q 036068 82 RANLRALDLGEWIKTYIDKNKV------------------------------------------------KNDIFAGNAL 113 (178)
Q Consensus 82 ~~~~~~~~~a~~~~~~m~~~~~------------------------------------------------~~~~~~~~~l 113 (178)
+.+.|++++|.+.++...+... +.+..++..+
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 178 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASL 178 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 8888888888777766554321 1245667777
Q ss_pred HHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhh
Q 036068 114 IDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175 (178)
Q Consensus 114 l~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~ 175 (178)
...|.+.|++++|. .+...|..+...+...|++++|.+.|++..+.. +.+...+..+...+
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 250 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSY 250 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 77788888888876 256677888888888888888888888887642 22344555444433
No 36
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.25 E-value=6.4e-10 Score=80.62 Aligned_cols=150 Identities=11% Similarity=0.012 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCC----cHHHHHHH
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG----DEFTIVSI 78 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~~l 78 (178)
+..|..+...+.+.|++++|...|++..+ | +...|..+...+...|++++|...|++..+.. | +...+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l 114 (359)
T 3ieg_A 37 YIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQL 114 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHH
Confidence 34455555555555555555555554432 2 44455555555555555555555555554432 2 22222222
Q ss_pred ------------HHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHH
Q 036068 79 ------------LTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTT 135 (178)
Q Consensus 79 ------------l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~ 135 (178)
...+...|++++|.++++.+.+..+ .+..++..+...+...|++++|. .+...|..
T Consensus 115 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 193 (359)
T 3ieg_A 115 VKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYK 193 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 2445555555555555555555432 23455555555555666655554 24455555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 036068 136 MIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 136 li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
+...+...|++++|.+.|++..+
T Consensus 194 la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 194 ISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55666666666666666666554
No 37
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.24 E-value=4.2e-10 Score=79.00 Aligned_cols=152 Identities=11% Similarity=-0.081 Sum_probs=114.1
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 81 (178)
+..+|..+...+...|++++|...|++..+ .+...|..+...|...|++++|.+.|++..+.. +.+...+..+..+
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~ 120 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA 120 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHH
Confidence 466788888889999999999998887653 367788888888889999999999998887764 2356788888888
Q ss_pred hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------------------------------
Q 036068 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ---------------------------------- 127 (178)
Q Consensus 82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~---------------------------------- 127 (178)
+.+.|++++|...++...+.... .......+..+...|++++|.
T Consensus 121 ~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 198 (275)
T 1xnf_A 121 LYYGGRDKLAQDDLLAFYQDDPN--DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLME 198 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHH
Confidence 88889999988888888775432 222222222333334444443
Q ss_pred ---------c-----chhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 128 ---------K-----DKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 128 ---------~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
+ +...|..+...+.+.|++++|...|++..+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 199 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 1 2577888999999999999999999999875
No 38
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.22 E-value=8.5e-10 Score=68.72 Aligned_cols=128 Identities=15% Similarity=0.216 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhc
Q 036068 7 ISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARA 83 (178)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 83 (178)
..|..+...+.+.|++++|..+++++.+ .+...+..+...+...|++++|...|+++.+.+ +.+...+..+...+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 3577788888999999999999987653 367778888888889999999999999987765 345677888888899
Q ss_pred cccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 84 NLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 84 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
+.|++++|.++++.+.+.... +...+..+...+.+.|++++|.+.++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPR------------------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT------------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCC------------------------ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 999999999999888776432 2234566777888889999999999998764
No 39
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.22 E-value=9.8e-10 Score=79.65 Aligned_cols=169 Identities=15% Similarity=0.048 Sum_probs=138.4
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 81 (178)
|+..|..+...+.+.|++++|.+.|++..+ .+...+..+...+...|++++|...|++..+.. +-+...+..+..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 567788899999999999999999998753 367889999999999999999999999998764 3366889999999
Q ss_pred hccccchhhHHHHHHHHHHhCcc--cchHHHHHH------------HHHHHhcCChhhhc-----------cchhhHHHH
Q 036068 82 RANLRALDLGEWIKTYIDKNKVK--NDIFAGNAL------------IDMYCICADVEKAQ-----------KDKFSWTTM 136 (178)
Q Consensus 82 ~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~l------------l~~~~~~~~~~~a~-----------~~~~~~~~l 136 (178)
+.+.|++++|...++...+.... .+...+..+ ...+...|++++|. .+...+..+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 99999999999999999887541 244555554 57899999999997 367788899
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhh
Q 036068 137 IVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175 (178)
Q Consensus 137 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~ 175 (178)
...+...|++++|.+.+++..+.. +.+...+..+-..+
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 198 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLY 198 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 999999999999999999998752 23455555554443
No 40
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.20 E-value=1.1e-09 Score=83.41 Aligned_cols=151 Identities=11% Similarity=0.038 Sum_probs=81.7
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR 82 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 82 (178)
...|..+...+...|++++|...+++..+ .+...|..+...+...|++++|...|++..+.. +.+...+..+...+
T Consensus 270 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 348 (514)
T 2gw1_A 270 VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLA 348 (514)
T ss_dssp HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHH
Confidence 34445555555555555555555554332 244455555556666666666666666655543 22344555555566
Q ss_pred ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cc-------hhhHHHHHHHHHh---
Q 036068 83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KD-------KFSWTTMIVGLAI--- 142 (178)
Q Consensus 83 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~-------~~~~~~li~~~~~--- 142 (178)
.+.|++++|...++.+.+... .+..++..+...|.+.|++++|. |+ ...|..+...+..
T Consensus 349 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 427 (514)
T 2gw1_A 349 YRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPT 427 (514)
T ss_dssp TTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCC
T ss_pred HHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhh
Confidence 666666666666665555432 23455555555666666665554 11 1155555566666
Q ss_pred cCChhHHHHHHHHHHH
Q 036068 143 SGNGDKALDMFSQMLR 158 (178)
Q Consensus 143 ~~~~~~a~~~~~~m~~ 158 (178)
.|++++|.+.+++..+
T Consensus 428 ~~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 428 VENFIEATNLLEKASK 443 (514)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666666554
No 41
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.20 E-value=5.7e-10 Score=85.22 Aligned_cols=154 Identities=12% Similarity=-0.009 Sum_probs=136.1
Q ss_pred CcchhHHHHHHHHHHhcCCh-hHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHH
Q 036068 3 NKDVISWTAIVSRYINRGQV-DIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSI 78 (178)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 78 (178)
+.+...|..+-..+...|++ ++|.+.|++..+ .+...|..+-..|.+.|++++|.+.|++..+.. |+...+..+
T Consensus 99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~l 176 (474)
T 4abn_A 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNL 176 (474)
T ss_dssp CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHH
T ss_pred chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHH
Confidence 34677888999999999999 999999998753 368899999999999999999999999998874 778889999
Q ss_pred HHHhccc---------cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhc--------CChhhhc----------c---
Q 036068 79 LTARANL---------RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC--------ADVEKAQ----------K--- 128 (178)
Q Consensus 79 l~~~~~~---------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--------~~~~~a~----------~--- 128 (178)
-.++.+. |++++|.+.++...+..+. +...|..+-..|... |++++|. |
T Consensus 177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 9999999 9999999999999987643 578899999999888 8898887 5
Q ss_pred -chhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 129 -DKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 129 -~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
+...|..+...|...|++++|.+.|++..+.
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5778899999999999999999999999875
No 42
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.19 E-value=1e-09 Score=83.54 Aligned_cols=162 Identities=11% Similarity=-0.010 Sum_probs=137.1
Q ss_pred CcchhHHHHHHHHHHhcCChhHHHHHhccCC---CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHH
Q 036068 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMP---ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79 (178)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 79 (178)
+.+..+|..+...+.+.|++++|...|++.. ..+...+..+...+...|++++|.+.|++..+.. +.+...+..+.
T Consensus 301 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 379 (514)
T 2gw1_A 301 SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFA 379 (514)
T ss_dssp TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHH
Confidence 3467789999999999999999999999864 2477889999999999999999999999988764 33567888999
Q ss_pred HHhccccchhhHHHHHHHHHHhCccc-c----hHHHHHHHHHHHh---cCChhhhc-----------cchhhHHHHHHHH
Q 036068 80 TARANLRALDLGEWIKTYIDKNKVKN-D----IFAGNALIDMYCI---CADVEKAQ-----------KDKFSWTTMIVGL 140 (178)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~m~~~~~~~-~----~~~~~~ll~~~~~---~~~~~~a~-----------~~~~~~~~li~~~ 140 (178)
..+.+.|++++|...++.+.+..... . ..++..+...+.+ .|++++|. .+..++..+...+
T Consensus 380 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 459 (514)
T 2gw1_A 380 EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMK 459 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 99999999999999999988754332 1 3489999999999 99999997 3677888999999
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCChhH
Q 036068 141 AISGNGDKALDMFSQMLRASIKPDEVA 167 (178)
Q Consensus 141 ~~~~~~~~a~~~~~~m~~~g~~p~~~t 167 (178)
.+.|++++|.+.|++..+. .|+...
T Consensus 460 ~~~g~~~~A~~~~~~a~~~--~~~~~~ 484 (514)
T 2gw1_A 460 LQQEDIDEAITLFEESADL--ARTMEE 484 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CSSHHH
T ss_pred HHhcCHHHHHHHHHHHHHh--ccccHH
Confidence 9999999999999999875 465443
No 43
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.19 E-value=2.6e-09 Score=73.39 Aligned_cols=165 Identities=13% Similarity=0.022 Sum_probs=133.3
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC----CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE----RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 79 (178)
.|+..|...-..+.+.|++++|.+.|++..+ ++...+..+-..+...|++++|.+.|++..+.. +-+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 5667888899999999999999999997642 577777778889999999999999999988765 23567888899
Q ss_pred HHhccccchhhHHHHHHHHHHhCcccch-------HHHHHHHHHHHhcCChhhhc----------c---chhhHHHHHHH
Q 036068 80 TARANLRALDLGEWIKTYIDKNKVKNDI-------FAGNALIDMYCICADVEKAQ----------K---DKFSWTTMIVG 139 (178)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~----------~---~~~~~~~li~~ 139 (178)
.++.+.|++++|...++...+..+. +. ..|..+-..+.+.|++++|. | +...|..+...
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 9999999999999999999887643 34 45777777888899999987 3 35677778888
Q ss_pred HHhcCCh---------------------------hHHHHHHHHHHHcCCCCChhHHHHHH
Q 036068 140 LAISGNG---------------------------DKALDMFSQMLRASIKPDEVAYVGVL 172 (178)
Q Consensus 140 ~~~~~~~---------------------------~~a~~~~~~m~~~g~~p~~~t~~~li 172 (178)
+...|+. ++|+..|++..+. .|+......++
T Consensus 163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l 220 (228)
T 4i17_A 163 FYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL--SPNRTEIKQMQ 220 (228)
T ss_dssp HHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 8888877 8899999998875 56655444433
No 44
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.15 E-value=1.1e-09 Score=77.92 Aligned_cols=155 Identities=12% Similarity=0.067 Sum_probs=127.3
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC--------C---ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC------
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE--------R---DYVLWTAMIDGYLRVNRFREALTLFQEMQTS------ 66 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------ 66 (178)
.+..+|..+...+...|++++|...|++..+ . ....+..+...|...|++++|...+++..+.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3466789999999999999999999998754 1 4557888889999999999999999998654
Q ss_pred CC-CCcHHHHHHHHHHhccccchhhHHHHHHHHHHh------Cc-ccchHHHHHHHHHHHhcCChhhhc-----------
Q 036068 67 NI-MGDEFTIVSILTARANLRALDLGEWIKTYIDKN------KV-KNDIFAGNALIDMYCICADVEKAQ----------- 127 (178)
Q Consensus 67 ~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~ll~~~~~~~~~~~a~----------- 127 (178)
+- .....++..+...+...|++++|...++...+. +. +....++..+...|...|++++|.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 22 334567888999999999999999999888764 22 234667888899999999999987
Q ss_pred --------cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 128 --------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 128 --------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
....++..+...+...|++++|.+++++..+
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1244678888999999999999999999986
No 45
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.15 E-value=2.2e-09 Score=82.24 Aligned_cols=151 Identities=9% Similarity=-0.089 Sum_probs=132.7
Q ss_pred hHHHHHHHHHHhcCChhHHHHHhccCC--CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068 7 ISWTAIVSRYINRGQVDIARQCFDQMP--ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84 (178)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 84 (178)
.+|..+...+...|++++|.+.|++.. .|+...|..+...+...|++++|.+.|++..+.. +.+..++..+...+.+
T Consensus 244 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 244 LALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHh
Confidence 357777888999999999999999876 3667888899999999999999999999998765 3467889999999999
Q ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHH
Q 036068 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMF 153 (178)
Q Consensus 85 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~ 153 (178)
.|++++|...++...+.... +...+..+...|.+.|++++|. .+...|..+...+...|++++|.+.|
T Consensus 323 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQY 401 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999987643 5788999999999999999997 35778899999999999999999999
Q ss_pred HHHHHc
Q 036068 154 SQMLRA 159 (178)
Q Consensus 154 ~~m~~~ 159 (178)
++..+.
T Consensus 402 ~~a~~~ 407 (537)
T 3fp2_A 402 DIAKRL 407 (537)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 998764
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.14 E-value=8.5e-09 Score=72.27 Aligned_cols=153 Identities=7% Similarity=-0.081 Sum_probs=124.4
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc--HHHHHHHHH
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD--EFTIVSILT 80 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~ 80 (178)
...+......+.+.|++++|...|++..+ | +...+..+...|...|++++|.+.+++..+..-.|+ ...|..+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 34456678889999999999999998753 3 566888999999999999999999999988432222 345888999
Q ss_pred HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHH
Q 036068 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKA 149 (178)
Q Consensus 81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a 149 (178)
++.+.|++++|...++...+.... +..++..+-..|...|++++|. .+...|..+...+...+++++|
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987643 5788999999999999999997 3566666666344455699999
Q ss_pred HHHHHHHHHc
Q 036068 150 LDMFSQMLRA 159 (178)
Q Consensus 150 ~~~~~~m~~~ 159 (178)
.+.|++..+.
T Consensus 162 ~~~~~~a~~~ 171 (272)
T 3u4t_A 162 DSSFVKVLEL 171 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.13 E-value=1.6e-08 Score=71.19 Aligned_cols=149 Identities=11% Similarity=-0.001 Sum_probs=81.1
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCCC-ChhHHHHHHHHHhh----cCChhHHHHHHHHhHhCCCCCcHHHHHHHH
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPER-DYVLWTAMIDGYLR----VNRFREALTLFQEMQTSNIMGDEFTIVSIL 79 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 79 (178)
++.++..+-..+.+.|++++|.+.|++..++ +...+..+-..|.. .+++++|.+.|++..+.+ +...+..+-
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 4445555566666666666666666654433 34455555555555 666666666666655554 444555555
Q ss_pred HHhcc----ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHh----cCChhhhc---------cchhhHHHHHHHHHh
Q 036068 80 TARAN----LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI----CADVEKAQ---------KDKFSWTTMIVGLAI 142 (178)
Q Consensus 80 ~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~---------~~~~~~~~li~~~~~ 142 (178)
..+.+ .+++++|...++...+.+ ++..+..+-..|.. .+++++|. .+...+..+-..|..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 158 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 55555 566666666665555543 34455555555555 55555554 233444444444444
Q ss_pred ----cCChhHHHHHHHHHHHc
Q 036068 143 ----SGNGDKALDMFSQMLRA 159 (178)
Q Consensus 143 ----~~~~~~a~~~~~~m~~~ 159 (178)
.+++++|.+.|++..+.
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~ 179 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDL 179 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHC
Confidence 55555555555555543
No 48
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.11 E-value=9.9e-10 Score=77.04 Aligned_cols=154 Identities=10% Similarity=-0.014 Sum_probs=122.6
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCC----------C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC------C
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPE----------R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTS------N 67 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~ 67 (178)
...+|..+...+...|++++|...+++..+ | ...++..+...|...|++++|.+.|++..+. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 456788899999999999999999987642 1 4557888899999999999999999987654 1
Q ss_pred -CCCcHHHHHHHHHHhccccchhhHHHHHHHHHHh------C-cccchHHHHHHHHHHHhcCChhhhc----------c-
Q 036068 68 -IMGDEFTIVSILTARANLRALDLGEWIKTYIDKN------K-VKNDIFAGNALIDMYCICADVEKAQ----------K- 128 (178)
Q Consensus 68 -~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~-~~~~~~~~~~ll~~~~~~~~~~~a~----------~- 128 (178)
-+....++..+...+...|++++|...++...+. + .+....++..+...|.+.|++++|. +
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1234567888888999999999999999888765 1 2224667888889999999999887 0
Q ss_pred -------------------------------------------------chhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 129 -------------------------------------------------DKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 129 -------------------------------------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
...++..+...|...|++++|.++|++.++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 123567788899999999999999998775
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.09 E-value=8.9e-09 Score=76.63 Aligned_cols=148 Identities=9% Similarity=0.048 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHhcCC-hhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068 7 ISWTAIVSRYINRGQ-VDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR 82 (178)
Q Consensus 7 ~~~~~li~~~~~~~~-~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 82 (178)
..|+.+-..+.+.|+ +++|+..|++..+ .+...|+.+-..+.+.|++++|+..|++..+.. +-+...|..+-.++
T Consensus 132 ~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~ 210 (382)
T 2h6f_A 132 TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVI 210 (382)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHH
Confidence 334444444444443 4444444444331 234444444444444444444544444444433 12344444444444
Q ss_pred ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHh-cCChhhhc----------------cchhhHHHHHHHHHhcC-
Q 036068 83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI-CADVEKAQ----------------KDKFSWTTMIVGLAISG- 144 (178)
Q Consensus 83 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~----------------~~~~~~~~li~~~~~~~- 144 (178)
.+.|++++|...++.+++..+. +...|+.+-..+.+ .|..++|. .+...|+.+...+...|
T Consensus 211 ~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~ 289 (382)
T 2h6f_A 211 QEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGL 289 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCG
T ss_pred HHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCc
Confidence 4555555555555555544322 34445555444444 33323331 13444555554455444
Q ss_pred -ChhHHHHHHHHH
Q 036068 145 -NGDKALDMFSQM 156 (178)
Q Consensus 145 -~~~~a~~~~~~m 156 (178)
++++|++.+.++
T Consensus 290 ~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 290 SKYPNLLNQLLDL 302 (382)
T ss_dssp GGCHHHHHHHHHH
T ss_pred cchHHHHHHHHHh
Confidence 355555555554
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.09 E-value=3.9e-09 Score=73.98 Aligned_cols=141 Identities=9% Similarity=-0.152 Sum_probs=118.3
Q ss_pred HhcCChhHHHHHhccCCCC-------ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchh
Q 036068 17 INRGQVDIARQCFDQMPER-------DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALD 89 (178)
Q Consensus 17 ~~~~~~~~a~~~~~~m~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 89 (178)
...|++++|.+.|+++.+. +...|..+...+...|++++|...|++..+.. +.+..++..+..++.+.|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 3567899999999977642 56788899999999999999999999998875 336789999999999999999
Q ss_pred hHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 90 LGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 90 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
+|...++...+... .+..++..+...|.+.|++++|. |+..........+...|++++|...+++....
T Consensus 95 ~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 95 AAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999999998764 35788999999999999999997 55555555556667789999999999887764
No 51
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.08 E-value=1.2e-08 Score=73.51 Aligned_cols=156 Identities=10% Similarity=0.040 Sum_probs=125.5
Q ss_pred CCcchhHHHHHHHHHHhcCChhHHHHHhccCCC--C-Chh-HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHH
Q 036068 2 KNKDVISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYV-LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVS 77 (178)
Q Consensus 2 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 77 (178)
++.+...|..+...+.+.|++++|.++|++..+ | +.. .|..+...+.+.|++++|.++|++..+.. +++...|..
T Consensus 95 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~ 173 (308)
T 2ond_A 95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVT 173 (308)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 344566899999999999999999999998754 3 344 89999999999999999999999988764 334555544
Q ss_pred HHHHh-ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-------------c--chhhHHHHHHHHH
Q 036068 78 ILTAR-ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-------------K--DKFSWTTMIVGLA 141 (178)
Q Consensus 78 ll~~~-~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-------------~--~~~~~~~li~~~~ 141 (178)
..... ...|++++|..+|+...+..+ .++..|..++..+.+.|+.++|. | ....|..++....
T Consensus 174 ~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~ 252 (308)
T 2ond_A 174 AALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES 252 (308)
T ss_dssp HHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 43332 236999999999999888653 36888999999999999999986 1 2347888888889
Q ss_pred hcCChhHHHHHHHHHHHc
Q 036068 142 ISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 142 ~~~~~~~a~~~~~~m~~~ 159 (178)
+.|+.++|..+++++.+.
T Consensus 253 ~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 253 NIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHSCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999999874
No 52
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.07 E-value=3.2e-08 Score=66.97 Aligned_cols=146 Identities=11% Similarity=-0.080 Sum_probs=108.2
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 84 (178)
+...+..+...+.+.|++++|.+.|++...++...|..+...|.+.|++++|.+.|++..+.. +.+...+..+..++.+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 445567788889999999999999999988899999999999999999999999999988765 3467788899999999
Q ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 85 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
.|++++|.+.++...+......... +...|. .........+..+...+.+.|++++|.+.|++..+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLID-------YKILGL-QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEE-------CGGGTB-CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHH-------HHHhcc-ccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 9999999999999887543211000 000000 000012345566666677777777777777776653
No 53
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.07 E-value=5.2e-09 Score=80.16 Aligned_cols=120 Identities=9% Similarity=0.008 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR 82 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 82 (178)
...|..+...+.+.|++++|.+.|++..+ .+..+|..+...+...|++++|...|++..+.. +.+...+..+..++
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 354 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLL 354 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 44455555555555555555555554432 244455555555555555555555555554432 11234455555555
Q ss_pred ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 83 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
.+.|++++|..+++...+... .+..++..+...+.+.|++++|.
T Consensus 355 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~ 398 (537)
T 3fp2_A 355 YKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAI 398 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHH
Confidence 555555555555555554432 23444555555555555555554
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.06 E-value=1.4e-08 Score=75.48 Aligned_cols=162 Identities=10% Similarity=0.028 Sum_probs=136.5
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCC-hhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNR-FREALTLFQEMQTSNIMGDEFTIVSILT 80 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 80 (178)
+...|+.+-..+.+.|++++|++.+++..+ .+...|+.+-..+.+.|+ +++|+..|++..+.. +-+...|..+-.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 345688899999999999999999998763 377889999999999997 999999999998875 336788999999
Q ss_pred HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHh-cCChhH
Q 036068 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAI-SGNGDK 148 (178)
Q Consensus 81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~-~~~~~~ 148 (178)
++.+.|++++|...++...+.... +...|..+-..+.+.|++++|. .+...|+.+...+.+ .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchH
Confidence 999999999999999999998754 6889999999999999999998 478899999999999 666688
Q ss_pred H-----HHHHHHHHHcCCCCCh-hHHHH
Q 036068 149 A-----LDMFSQMLRASIKPDE-VAYVG 170 (178)
Q Consensus 149 a-----~~~~~~m~~~g~~p~~-~t~~~ 170 (178)
| ++.|++.++. .|+. ..|..
T Consensus 254 A~~~~el~~~~~Al~l--~P~~~~a~~~ 279 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKL--VPHNESAWNY 279 (382)
T ss_dssp HHHHHHHHHHHHHHHH--STTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--CCCCHHHHHH
Confidence 8 5888888764 4644 34433
No 55
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.05 E-value=7e-09 Score=70.58 Aligned_cols=163 Identities=15% Similarity=0.079 Sum_probs=123.8
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHH----------------HHHHHhhcCChhHHHHHHHHhHhC
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTA----------------MIDGYLRVNRFREALTLFQEMQTS 66 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~----------------li~~~~~~~~~~~a~~~~~~m~~~ 66 (178)
+..+-.....+.+.|++++|...|++..+ | +...|.. +-..|.+.|++++|...|++..+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34445556678899999999999998764 3 4455666 888999999999999999999887
Q ss_pred CCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cch--hhHH
Q 036068 67 NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KDK--FSWT 134 (178)
Q Consensus 67 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~~--~~~~ 134 (178)
. +-+...+..+-.++...|++++|...|+...+..+. +..++..+-..|...|+.+... ++. ..+.
T Consensus 84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 161 (208)
T 3urz_A 84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARY 161 (208)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHH
Confidence 5 336788999999999999999999999999988643 5777888877776655433221 222 2334
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHH
Q 036068 135 TMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172 (178)
Q Consensus 135 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 172 (178)
..-.++...|++++|...|++.++ ..|+......+-
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 445566678999999999999886 468876655543
No 56
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.04 E-value=2.1e-08 Score=70.30 Aligned_cols=161 Identities=10% Similarity=0.008 Sum_probs=125.5
Q ss_pred CcchhHHHHHHHHHHhcCChhHHHHHhccCCC--C-C---hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCC--CCcHHH
Q 036068 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPE--R-D---YVLWTAMIDGYLRVNRFREALTLFQEMQTSNI--MGDEFT 74 (178)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~ 74 (178)
+.+...+-.+...+.+.|++++|.+.|+++.+ | + ...+..+-..|.+.|++++|...|++..+..- ......
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 45667777888999999999999999998864 3 3 56788888999999999999999999987631 122456
Q ss_pred HHHHHHHhcc--------ccchhhHHHHHHHHHHhCcccchHHH-----------------HHHHHHHHhcCChhhhc--
Q 036068 75 IVSILTARAN--------LRALDLGEWIKTYIDKNKVKNDIFAG-----------------NALIDMYCICADVEKAQ-- 127 (178)
Q Consensus 75 ~~~ll~~~~~--------~~~~~~a~~~~~~m~~~~~~~~~~~~-----------------~~ll~~~~~~~~~~~a~-- 127 (178)
+..+..++.+ .|++++|...|+.+.+..+. +.... ..+-..|.+.|++++|.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 6677778877 99999999999999987643 23333 44567789999999997
Q ss_pred --------cc----hhhHHHHHHHHHhc----------CChhHHHHHHHHHHHcCCCCChh
Q 036068 128 --------KD----KFSWTTMIVGLAIS----------GNGDKALDMFSQMLRASIKPDEV 166 (178)
Q Consensus 128 --------~~----~~~~~~li~~~~~~----------~~~~~a~~~~~~m~~~g~~p~~~ 166 (178)
|+ ...+..+...|... |++++|...|++..+. .|+..
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~ 229 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSP 229 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCT
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCCh
Confidence 33 34566777777765 8999999999999875 46653
No 57
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.04 E-value=1.1e-07 Score=68.45 Aligned_cols=166 Identities=11% Similarity=0.105 Sum_probs=128.3
Q ss_pred cchhHHHHHHHHHH-------hcCCh-------hHHHHHhccCCC---C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHh
Q 036068 4 KDVISWTAIVSRYI-------NRGQV-------DIARQCFDQMPE---R-DYVLWTAMIDGYLRVNRFREALTLFQEMQT 65 (178)
Q Consensus 4 p~~~~~~~li~~~~-------~~~~~-------~~a~~~~~~m~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 65 (178)
-++..|..+...+. +.|++ ++|..+|++..+ | +...|..+...+.+.|++++|.++|++..+
T Consensus 48 ~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 127 (308)
T 2ond_A 48 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 127 (308)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 45566777777765 35886 899999997543 3 666899999999999999999999999988
Q ss_pred CCCCCc-HH-HHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHH-HhcCChhhhc-----------cchh
Q 036068 66 SNIMGD-EF-TIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY-CICADVEKAQ-----------KDKF 131 (178)
Q Consensus 66 ~~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~~~~a~-----------~~~~ 131 (178)
. .|+ .. .|..+...+.+.|++++|..+|+...+... .+...|....... ...|+.+.|. .+..
T Consensus 128 ~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 204 (308)
T 2ond_A 128 I--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPE 204 (308)
T ss_dssp S--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred c--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 5 454 33 799999999999999999999999988754 3455555443332 2368888886 3678
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCC--hhHHHHHH
Q 036068 132 SWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPD--EVAYVGVL 172 (178)
Q Consensus 132 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~--~~t~~~li 172 (178)
.|..++..+.+.|++++|..+|++.++.. +.|+ ...|..++
T Consensus 205 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~ 248 (308)
T 2ond_A 205 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL 248 (308)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999863 5664 33444433
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.03 E-value=4.3e-08 Score=64.90 Aligned_cols=135 Identities=12% Similarity=0.059 Sum_probs=112.7
Q ss_pred ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID 115 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 115 (178)
+...|..+-..|.+.|++++|.+.|++..+.. +-+...+..+..++.+.|++++|...+......... +...+..+-.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 56789999999999999999999999988875 336788899999999999999999999999887644 5677888888
Q ss_pred HHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-hhHHHHHHhh
Q 036068 116 MYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPD-EVAYVGVLSA 174 (178)
Q Consensus 116 ~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~li~a 174 (178)
.+...++++.+. .+...+..+...+.+.|++++|.+.|++..+. .|+ ...+..+-.+
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~ 150 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLA 150 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHH
Confidence 899999999887 36778888999999999999999999999875 353 4445444333
No 59
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.03 E-value=6.3e-09 Score=74.05 Aligned_cols=154 Identities=10% Similarity=-0.006 Sum_probs=122.1
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCC-----------CChhHHHHHHHHHhhcCChhHHHHHHHHhHhC------C
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPE-----------RDYVLWTAMIDGYLRVNRFREALTLFQEMQTS------N 67 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~ 67 (178)
...++..+...+...|++++|...+++..+ .....+..+...|...|++++|.+.|++..+. +
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 147 (311)
T 3nf1_A 68 VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 147 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC
Confidence 345688889999999999999999887642 14557888889999999999999999987654 2
Q ss_pred C-CCcHHHHHHHHHHhccccchhhHHHHHHHHHHh------C-cccchHHHHHHHHHHHhcCChhhhc----------c-
Q 036068 68 I-MGDEFTIVSILTARANLRALDLGEWIKTYIDKN------K-VKNDIFAGNALIDMYCICADVEKAQ----------K- 128 (178)
Q Consensus 68 ~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~-~~~~~~~~~~ll~~~~~~~~~~~a~----------~- 128 (178)
- ......+..+...+.+.|++++|.++++...+. + .+....++..+...|.+.|++++|. +
T Consensus 148 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 148 DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2 223466788888999999999999999888765 2 2224567888888999999999886 0
Q ss_pred -------------------------------------------------chhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 129 -------------------------------------------------DKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 129 -------------------------------------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
+..+|..+...|.+.|++++|.++|++..+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 228 REFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 235577888999999999999999998875
No 60
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.03 E-value=1e-07 Score=67.05 Aligned_cols=150 Identities=13% Similarity=-0.019 Sum_probs=115.0
Q ss_pred chhHHHHHHHHHHh----cCChhHHHHHhccCCC-CChhHHHHHHHHHhh----cCChhHHHHHHHHhHhCCCCCcHHHH
Q 036068 5 DVISWTAIVSRYIN----RGQVDIARQCFDQMPE-RDYVLWTAMIDGYLR----VNRFREALTLFQEMQTSNIMGDEFTI 75 (178)
Q Consensus 5 ~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~ 75 (178)
+...+..+-..+.. .+++++|...|++..+ .+...+..+-..|.. .+++++|.+.|++..+.+ +...+
T Consensus 37 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 113 (273)
T 1ouv_A 37 ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGC 113 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHH
Confidence 34566777788888 8888888888887653 367777778888888 888888888888887765 56677
Q ss_pred HHHHHHhcc----ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHh----cCChhhhc---------cchhhHHHHHH
Q 036068 76 VSILTARAN----LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI----CADVEKAQ---------KDKFSWTTMIV 138 (178)
Q Consensus 76 ~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~---------~~~~~~~~li~ 138 (178)
..+-..+.+ .+++++|...++...+.+ +...+..+-..|.. .+++++|. .+...+..+-.
T Consensus 114 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 190 (273)
T 1ouv_A 114 ASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGN 190 (273)
T ss_dssp HHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777777 888888888888888765 45566667777777 77888776 35667777777
Q ss_pred HHHh----cCChhHHHHHHHHHHHcC
Q 036068 139 GLAI----SGNGDKALDMFSQMLRAS 160 (178)
Q Consensus 139 ~~~~----~~~~~~a~~~~~~m~~~g 160 (178)
.|.. .+++++|.+.|++..+.+
T Consensus 191 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 216 (273)
T 1ouv_A 191 MYHHGEGATKNFKEALARYSKACELE 216 (273)
T ss_dssp HHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCccHHHHHHHHHHHHhCC
Confidence 8888 888888888888887764
No 61
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.01 E-value=6.2e-08 Score=67.83 Aligned_cols=158 Identities=9% Similarity=-0.013 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 84 (178)
.|..+...+.+.|++++|.+.|++..+ .+...|..+...|...|++++|.+.|++..+.. +.+...+..+...+..
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH
Confidence 366677777777777777777776542 355677777777777777777777777776652 2344555555523333
Q ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCC---hhhhc-------------cc------hhhHHHHHHHHHh
Q 036068 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICAD---VEKAQ-------------KD------KFSWTTMIVGLAI 142 (178)
Q Consensus 85 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~-------------~~------~~~~~~li~~~~~ 142 (178)
.+++++|.+.++...+..+. +...+..+...+...|+ +++|. |+ ...|..+...|.+
T Consensus 155 ~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 44788888888877776533 35666667777777776 55554 23 1467778888899
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhHHH
Q 036068 143 SGNGDKALDMFSQMLRASIKPDEVAYV 169 (178)
Q Consensus 143 ~~~~~~a~~~~~~m~~~g~~p~~~t~~ 169 (178)
.|++++|.+.|++..+. .|+.....
T Consensus 234 ~~~~~~A~~~~~~al~~--~p~~~~a~ 258 (272)
T 3u4t_A 234 NRDKVKADAAWKNILAL--DPTNKKAI 258 (272)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--CccHHHHH
Confidence 99999999999999875 46654433
No 62
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.00 E-value=3.8e-08 Score=64.54 Aligned_cols=136 Identities=15% Similarity=0.072 Sum_probs=111.6
Q ss_pred hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068 37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116 (178)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 116 (178)
...|..+...+...|++++|.+.|++..+.. +.+...+..+...+.+.|++++|...++...+... .+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 3457778888999999999999999987764 34678888999999999999999999999988753 467888999999
Q ss_pred HHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhh
Q 036068 117 YCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175 (178)
Q Consensus 117 ~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~ 175 (178)
+...|++++|. .+...+..+...+...|++++|.+++++..+.. +.+...+..+...+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 154 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSY 154 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHH
Confidence 99999999987 367788888899999999999999999998763 23445555554443
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.99 E-value=2.8e-09 Score=81.46 Aligned_cols=152 Identities=11% Similarity=-0.009 Sum_probs=130.4
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCC--CCChhHHHHHHHHHhhc---------CChhHHHHHHHHhHhCCCCCcH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMP--ERDYVLWTAMIDGYLRV---------NRFREALTLFQEMQTSNIMGDE 72 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~~~~~~~ 72 (178)
.+...|..+...+.+.|++++|.+.|++.. .|+...+..+-..|... |++++|.+.|++..+.. +-+.
T Consensus 135 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 213 (474)
T 4abn_A 135 ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDG 213 (474)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCH
Confidence 357789999999999999999999999875 36778888899999999 99999999999988875 3357
Q ss_pred HHHHHHHHHhccc--------cchhhHHHHHHHHHHhCcc--cchHHHHHHHHHHHhcCChhhhc-----------cchh
Q 036068 73 FTIVSILTARANL--------RALDLGEWIKTYIDKNKVK--NDIFAGNALIDMYCICADVEKAQ-----------KDKF 131 (178)
Q Consensus 73 ~~~~~ll~~~~~~--------~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~ 131 (178)
..|..+..++... |++++|...|+...+.... .+...|..+-..|.+.|++++|. .+..
T Consensus 214 ~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 293 (474)
T 4abn_A 214 RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE 293 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 8888899999888 9999999999999987542 47889999999999999999997 3566
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHH
Q 036068 132 SWTTMIVGLAISGNGDKALDMFSQM 156 (178)
Q Consensus 132 ~~~~li~~~~~~~~~~~a~~~~~~m 156 (178)
.+..+...+...|++++|.+.+.++
T Consensus 294 a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 294 PQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7888889999999999999765443
No 64
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.95 E-value=2.8e-08 Score=60.92 Aligned_cols=114 Identities=13% Similarity=0.135 Sum_probs=92.8
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 80 (178)
.+...|..+...+.+.|++++|.+.|+++.+ .+...+..+...+.+.|++++|...|+++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGN 85 (125)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 3467888999999999999999999998753 367788899999999999999999999988764 346778889999
Q ss_pred HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHh
Q 036068 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI 119 (178)
Q Consensus 81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 119 (178)
++.+.|++++|...++...+..+. +...+..+-..+.+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHh
Confidence 999999999999999998887543 45555555544443
No 65
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.92 E-value=4.9e-08 Score=75.97 Aligned_cols=139 Identities=9% Similarity=-0.041 Sum_probs=97.9
Q ss_pred cCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHH
Q 036068 19 RGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIK 95 (178)
Q Consensus 19 ~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 95 (178)
.|++++|.+.|++..+ .+...|..+-..+.+.|++++|.+.|++..+.. +-+...+..+..++.+.|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4677888888887654 256778888888888888888888888887764 235677888888888888888888888
Q ss_pred HHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhc---CChhHHHHHHHHHHHc
Q 036068 96 TYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAIS---GNGDKALDMFSQMLRA 159 (178)
Q Consensus 96 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~ 159 (178)
+...+... .+...+..+-..|.+.|++++|. .+...+..+...+... |+.++|.+.+++..+.
T Consensus 81 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 88887653 35677888888888888888887 3566778888888888 9999999999988875
No 66
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.92 E-value=8.5e-08 Score=63.32 Aligned_cols=148 Identities=15% Similarity=0.029 Sum_probs=114.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH-hc
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA-RA 83 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~ 83 (178)
.+......+.+.|++++|...|++..+ .+...+..+-..+.+.|++++|...|++..+.. |+...+...... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 455677889999999999999999875 377789999999999999999999999987653 344333222211 12
Q ss_pred cccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------cc---hhhHHHHHHHHHhcCChhHHH
Q 036068 84 NLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------KD---KFSWTTMIVGLAISGNGDKAL 150 (178)
Q Consensus 84 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~---~~~~~~li~~~~~~~~~~~a~ 150 (178)
+.+...++...++...+..+. ++..+..+-..+...|++++|. |+ ...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 223344578888888876543 5788889999999999999987 33 457888999999999999999
Q ss_pred HHHHHHHH
Q 036068 151 DMFSQMLR 158 (178)
Q Consensus 151 ~~~~~m~~ 158 (178)
..|++.+.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 67
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.90 E-value=2.7e-08 Score=79.21 Aligned_cols=144 Identities=8% Similarity=-0.089 Sum_probs=123.4
Q ss_pred HhcCChhHHHHHhccCC-----------CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccc
Q 036068 17 INRGQVDIARQCFDQMP-----------ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL 85 (178)
Q Consensus 17 ~~~~~~~~a~~~~~~m~-----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 85 (178)
...|++++|.+.+++.. ..+...+..+-..+.+.|++++|.+.|++..+.. +-+...|..+-.++.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 78999999999998765 2367788888999999999999999999988764 33667888888999999
Q ss_pred cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHH
Q 036068 86 RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFS 154 (178)
Q Consensus 86 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~ 154 (178)
|++++|...|+...+..+. +...+..+-..|.+.|++++ . .+...|..+...+.+.|++++|.+.|+
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999988743 57888899999999999988 7 367788999999999999999999999
Q ss_pred HHHHcCCCCCh
Q 036068 155 QMLRASIKPDE 165 (178)
Q Consensus 155 ~m~~~g~~p~~ 165 (178)
+..+. .|+.
T Consensus 559 ~al~l--~P~~ 567 (681)
T 2pzi_A 559 EVPPT--SRHF 567 (681)
T ss_dssp TSCTT--STTH
T ss_pred hhccc--Cccc
Confidence 88753 5654
No 68
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.89 E-value=5.6e-08 Score=65.07 Aligned_cols=142 Identities=12% Similarity=-0.001 Sum_probs=101.7
Q ss_pred HhcCChhHHHH---HhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHh----CCCC-CcHHHHHHHHHHhccccch
Q 036068 17 INRGQVDIARQ---CFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQT----SNIM-GDEFTIVSILTARANLRAL 88 (178)
Q Consensus 17 ~~~~~~~~a~~---~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~-~~~~~~~~ll~~~~~~~~~ 88 (178)
...|++++|.+ ++..-+......+..+-..+...|++++|...+++..+ .+.. ....++..+-..+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 46788999888 66554444667788888888899999999998888655 2222 2345677777888889999
Q ss_pred hhHHHHHHHHHHh----Ccc--cchHHHHHHHHHHHhcCChhhhc-------------cc----hhhHHHHHHHHHhcCC
Q 036068 89 DLGEWIKTYIDKN----KVK--NDIFAGNALIDMYCICADVEKAQ-------------KD----KFSWTTMIVGLAISGN 145 (178)
Q Consensus 89 ~~a~~~~~~m~~~----~~~--~~~~~~~~ll~~~~~~~~~~~a~-------------~~----~~~~~~li~~~~~~~~ 145 (178)
++|...++...+. +-. .....+..+-..+...|++++|. .+ ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 9998888776653 212 22455777788888899998886 11 2335677788889999
Q ss_pred hhHHHHHHHHHHH
Q 036068 146 GDKALDMFSQMLR 158 (178)
Q Consensus 146 ~~~a~~~~~~m~~ 158 (178)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988875
No 69
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.88 E-value=8.8e-08 Score=59.53 Aligned_cols=117 Identities=9% Similarity=-0.042 Sum_probs=95.9
Q ss_pred CcchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHH
Q 036068 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79 (178)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 79 (178)
+.++..|..+...+.+.|++++|...|++..+ .+...+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 45667789999999999999999999998643 377888889999999999999999999988764 33677888899
Q ss_pred HHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcC
Q 036068 80 TARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121 (178)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 121 (178)
.++.+.|++++|.+.++...+.... +...+..+...+.+.|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 9999999999999999998877533 4566666666666554
No 70
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.88 E-value=1.2e-07 Score=75.91 Aligned_cols=135 Identities=13% Similarity=-0.019 Sum_probs=115.4
Q ss_pred ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID 115 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 115 (178)
+...|+.|-..|.+.|++++|.+.|++..+.. +-+...+..+-.++.+.|++++|.+.|++..+.... +...|..+-.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 46689999999999999999999999988864 235788999999999999999999999999987643 5788999999
Q ss_pred HHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh-hHHHHHHhh
Q 036068 116 MYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE-VAYVGVLSA 174 (178)
Q Consensus 116 ~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~t~~~li~a 174 (178)
.|.+.|++++|. .+...|+.+...+.+.|++++|++.|++.++. .|+. ..+..+..+
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~ 154 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHC 154 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhH
Confidence 999999999997 36788999999999999999999999999875 4653 445544443
No 71
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.85 E-value=3.8e-08 Score=68.85 Aligned_cols=143 Identities=11% Similarity=-0.009 Sum_probs=112.6
Q ss_pred HhcCChhHHHHHhccCCC-------C----ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC------CC-CCcHHHHHHH
Q 036068 17 INRGQVDIARQCFDQMPE-------R----DYVLWTAMIDGYLRVNRFREALTLFQEMQTS------NI-MGDEFTIVSI 78 (178)
Q Consensus 17 ~~~~~~~~a~~~~~~m~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~l 78 (178)
...|++++|.+.|++..+ + ...++..+-..|...|++++|...+++..+. +- .....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 456777776666665432 2 4567888999999999999999999998654 22 2345688899
Q ss_pred HHHhccccchhhHHHHHHHHHHhC-------cccchHHHHHHHHHHHhcCChhhhc-------------------cchhh
Q 036068 79 LTARANLRALDLGEWIKTYIDKNK-------VKNDIFAGNALIDMYCICADVEKAQ-------------------KDKFS 132 (178)
Q Consensus 79 l~~~~~~~~~~~a~~~~~~m~~~~-------~~~~~~~~~~ll~~~~~~~~~~~a~-------------------~~~~~ 132 (178)
..++...|++++|...++...+.. .+....++..+...|...|++++|. ....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999998887641 1334677888999999999999987 12456
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 133 WTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 133 ~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
+..+...+...|++++|.+++++..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 788889999999999999999998863
No 72
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.85 E-value=2.8e-07 Score=63.25 Aligned_cols=154 Identities=7% Similarity=-0.048 Sum_probs=114.5
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCC--CC----hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCC-CcH-HHHH
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPE--RD----YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM-GDE-FTIV 76 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~-~~~~ 76 (178)
+...+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|.+.|++..+..-. +.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 445566678889999999999999998863 32 346777889999999999999999998875421 111 1333
Q ss_pred HHHHHhc------------------cccchhhHHHHHHHHHHhCcccchHHH-----------------HHHHHHHHhcC
Q 036068 77 SILTARA------------------NLRALDLGEWIKTYIDKNKVKNDIFAG-----------------NALIDMYCICA 121 (178)
Q Consensus 77 ~ll~~~~------------------~~~~~~~a~~~~~~m~~~~~~~~~~~~-----------------~~ll~~~~~~~ 121 (178)
.+-.++. ..|++++|...|+.+.+..+. +...+ -.+-..|.+.|
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~ 161 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG 161 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3333333 367899999999999887543 23222 23445688899
Q ss_pred Chhhhc----------cch----hhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 122 DVEKAQ----------KDK----FSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 122 ~~~~a~----------~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
++++|. |+. ..+..+...+.+.|+.++|.+.++++...
T Consensus 162 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 162 AWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 999987 432 46788889999999999999999998876
No 73
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.85 E-value=3e-07 Score=70.91 Aligned_cols=152 Identities=10% Similarity=0.086 Sum_probs=117.5
Q ss_pred chhHHHHHHHHHHh-------cCChh-------HHHHHhccCCC---C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC
Q 036068 5 DVISWTAIVSRYIN-------RGQVD-------IARQCFDQMPE---R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTS 66 (178)
Q Consensus 5 ~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~m~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 66 (178)
+...|......+.+ .|+++ +|.++|++..+ | +...|..+...+.+.|++++|.++|++..+.
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 45667777777765 68887 88999987653 4 6778889999999999999999999998885
Q ss_pred CCCCc--HHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH-HHHhcCChhhhc----------c-chhh
Q 036068 67 NIMGD--EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID-MYCICADVEKAQ----------K-DKFS 132 (178)
Q Consensus 67 ~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~----------~-~~~~ 132 (178)
.|+ ...|..+...+.+.|++++|.++|+...+.... +...+-.... .+...|+.+.|. | +...
T Consensus 351 --~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~ 427 (530)
T 2ooe_A 351 --EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY 427 (530)
T ss_dssp --SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred --cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHH
Confidence 454 257888888888999999999999988876432 2333332222 234678888876 3 5788
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 133 WTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 133 ~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
|..++..+.+.|+.++|..+|++....
T Consensus 428 ~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 428 VLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 899999999999999999999999886
No 74
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.84 E-value=1.1e-07 Score=67.77 Aligned_cols=151 Identities=12% Similarity=-0.023 Sum_probs=114.9
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHH-HH
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSI-LT 80 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-l~ 80 (178)
+...+..+...+.+.|++++|...|++..+ | +...+..+...+.+.|++++|...+++..... |+....... ..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~ 193 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHH
Confidence 344566677888889999999999998753 3 66788888889999999999999999887653 444332222 22
Q ss_pred HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------c---chhhHHHHHHHHHhcCChh
Q 036068 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------K---DKFSWTTMIVGLAISGNGD 147 (178)
Q Consensus 81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~---~~~~~~~li~~~~~~~~~~ 147 (178)
.+.+.++.++|...++...+..+ .+...+..+-..|...|++++|. | +...+..+...+...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 35677778888888888887764 36778888888899999999887 2 2567888888888899999
Q ss_pred HHHHHHHHHHH
Q 036068 148 KALDMFSQMLR 158 (178)
Q Consensus 148 ~a~~~~~~m~~ 158 (178)
+|...|++-+.
T Consensus 273 ~a~~~~r~al~ 283 (287)
T 3qou_A 273 ALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 88888877653
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.84 E-value=3.6e-07 Score=62.52 Aligned_cols=126 Identities=11% Similarity=-0.016 Sum_probs=107.8
Q ss_pred ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID 115 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 115 (178)
|...+...-..+.+.|++++|...|++..+..-.++...+..+..++.+.|++++|...++...+..+. +..++..+-.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 567788888899999999999999999988764367777777999999999999999999999987644 6788999999
Q ss_pred HHHhcCChhhhc----------c-ch-------hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 036068 116 MYCICADVEKAQ----------K-DK-------FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 164 (178)
Q Consensus 116 ~~~~~~~~~~a~----------~-~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 164 (178)
.|.+.|++++|. | +. ..|..+-..+...|++++|.+.|++.++. .|+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~ 149 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSK 149 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCC
Confidence 999999999998 3 33 45777888889999999999999999864 566
No 76
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.84 E-value=2.2e-07 Score=66.27 Aligned_cols=150 Identities=9% Similarity=-0.073 Sum_probs=114.5
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCC-----CC----hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCC-Cc----HHH
Q 036068 9 WTAIVSRYINRGQVDIARQCFDQMPE-----RD----YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM-GD----EFT 74 (178)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~ 74 (178)
+...+..+.+.|++++|.+++++..+ ++ ...+..+...+...+++++|...|++....... ++ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 34457888999999999999998653 12 123334666777888999999999998873222 22 346
Q ss_pred HHHHHHHhccccchhhHHHHHHHHHH----h-Cccc-chHHHHHHHHHHHhcCChhhhcc-----------------chh
Q 036068 75 IVSILTARANLRALDLGEWIKTYIDK----N-KVKN-DIFAGNALIDMYCICADVEKAQK-----------------DKF 131 (178)
Q Consensus 75 ~~~ll~~~~~~~~~~~a~~~~~~m~~----~-~~~~-~~~~~~~ll~~~~~~~~~~~a~~-----------------~~~ 131 (178)
++.+-.+|...|++++|...++...+ . +..+ ...++..+-..|.+.|++++|.. -..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 88999999999999999999988774 1 2222 24578899999999999999981 156
Q ss_pred hHHHHHHHHHhcCC-hhHHHHHHHHHHH
Q 036068 132 SWTTMIVGLAISGN-GDKALDMFSQMLR 158 (178)
Q Consensus 132 ~~~~li~~~~~~~~-~~~a~~~~~~m~~ 158 (178)
+|..+-..+.+.|+ +++|.+.|++...
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 78888899999995 6999999988865
No 77
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.81 E-value=1.1e-07 Score=58.64 Aligned_cols=118 Identities=7% Similarity=-0.066 Sum_probs=97.7
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 80 (178)
.+...|..+...+...|++++|...|++..+ .+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 4566788899999999999999999998653 377788889999999999999999999988764 335778888889
Q ss_pred HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCCh
Q 036068 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123 (178)
Q Consensus 81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 123 (178)
++.+.|++++|...++...+... .+...+..+...+.+.|+.
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhcC
Confidence 99999999999999999888764 3566777777777777764
No 78
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.79 E-value=1.3e-07 Score=69.78 Aligned_cols=153 Identities=11% Similarity=-0.035 Sum_probs=119.6
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCC-----C----ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC----CC-CCc
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMPE-----R----DYVLWTAMIDGYLRVNRFREALTLFQEMQTS----NI-MGD 71 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~ 71 (178)
..+++.+-..+...|++++|.+.|++..+ + ...++..+-..|...|++++|.+.|++..+. +. +..
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 45788899999999999999999987653 1 2247888899999999999999999997662 33 334
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHh----CcccchHHHHHHHHHHHhcCC---hhhhc----------cchhhHH
Q 036068 72 EFTIVSILTARANLRALDLGEWIKTYIDKN----KVKNDIFAGNALIDMYCICAD---VEKAQ----------KDKFSWT 134 (178)
Q Consensus 72 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~ll~~~~~~~~---~~~a~----------~~~~~~~ 134 (178)
..++..+..++.+.|++++|...++...+. +-+.....+..+-..|...|+ .++|. .....+.
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~ 343 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 678888999999999999999999877653 222233446677777888888 55554 2344677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 036068 135 TMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 135 ~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
.+...|...|++++|.+.|++..+
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888999999999999999999876
No 79
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.77 E-value=2e-07 Score=66.54 Aligned_cols=151 Identities=6% Similarity=-0.072 Sum_probs=117.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCC-------C--ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC----CCCC-cHH
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPE-------R--DYVLWTAMIDGYLRVNRFREALTLFQEMQTS----NIMG-DEF 73 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~-------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~ 73 (178)
.|......|...|++++|.+.|++..+ + ...+|+.+-..|.+.|++++|...|++..+. |-.. -..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 577778888899999999888876542 1 2568889999999999999999999887543 2111 145
Q ss_pred HHHHHHHHhccc-cchhhHHHHHHHHHHhCccc-----chHHHHHHHHHHHhcCChhhhc----------cch-h-----
Q 036068 74 TIVSILTARANL-RALDLGEWIKTYIDKNKVKN-----DIFAGNALIDMYCICADVEKAQ----------KDK-F----- 131 (178)
Q Consensus 74 ~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~----------~~~-~----- 131 (178)
++..+-..|.+. |++++|...++...+..... ...++..+-..|.+.|++++|. |+. .
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 788888899996 99999999998877643211 1456888899999999999997 221 1
Q ss_pred --hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 132 --SWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 132 --~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
.|..+...+...|++++|...|++.++
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 467777888999999999999999875
No 80
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.77 E-value=8e-08 Score=61.95 Aligned_cols=106 Identities=6% Similarity=-0.142 Sum_probs=69.5
Q ss_pred HHHhcCChhHHHHHhccCCCC---ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhH
Q 036068 15 RYINRGQVDIARQCFDQMPER---DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLG 91 (178)
Q Consensus 15 ~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 91 (178)
.+...|++++|++.+.+.... +...+-.+-..|.+.|++++|.+.|++..+.. +-+..+|..+-.++.+.|++++|
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 344567778888777766543 34455567777888888888888888877764 23567777888888888888888
Q ss_pred HHHHHHHHHhCcccchHHHHHHHHHHHhcCC
Q 036068 92 EWIKTYIDKNKVKNDIFAGNALIDMYCICAD 122 (178)
Q Consensus 92 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 122 (178)
...|+...+..+. ++.++..+-..|.+.|+
T Consensus 85 ~~~~~~al~~~p~-~~~~~~~la~~~~~~~~ 114 (150)
T 4ga2_A 85 VECYRRSVELNPT-QKDLVLKIAELLCKNDV 114 (150)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 8888887776532 23344333333333333
No 81
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.77 E-value=3.1e-07 Score=66.10 Aligned_cols=150 Identities=13% Similarity=0.080 Sum_probs=90.7
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC-----CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCC-----cHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE-----RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG-----DEF 73 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~ 73 (178)
++..++..+..++...|++++|++++.+... -+...+-.++..+.+.|+.+.|.+.+++|.+. .| +..
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~ 175 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNE 175 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchH
Confidence 4444555677777777888888777776522 25556777777777788888888888777664 45 245
Q ss_pred HHHHHHHHhc----cccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhcc---------------------
Q 036068 74 TIVSILTARA----NLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK--------------------- 128 (178)
Q Consensus 74 ~~~~ll~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~--------------------- 128 (178)
+...+..++. ..+++++|..+|+++.+... +..+...++.++.+.|++++|..
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p--~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~ 253 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQTFP--TWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLY 253 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSC--SHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSS
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCC--CcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCC
Confidence 5555555522 23377777778777765532 22222333336777777777761
Q ss_pred chhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 129 DKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 129 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
|..+.-.+|......|+ +|.+++.++++.
T Consensus 254 ~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 254 KPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 33334233444444555 677777777764
No 82
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.71 E-value=6.4e-07 Score=63.88 Aligned_cols=152 Identities=8% Similarity=-0.092 Sum_probs=114.1
Q ss_pred hHHHHHHHHHHhcCChhHHHHHhccCCC---CC------hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCC---CCc--H
Q 036068 7 ISWTAIVSRYINRGQVDIARQCFDQMPE---RD------YVLWTAMIDGYLRVNRFREALTLFQEMQTSNI---MGD--E 72 (178)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~--~ 72 (178)
..+...+..+...|++++|.+.+++..+ .+ ...+..+...+...|++++|...+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455678889999999999999875432 11 12234455667788999999999998765321 122 4
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHH---hCc-cc--chHHHHHHHHHHHhcCChhhhc----------cc-------
Q 036068 73 FTIVSILTARANLRALDLGEWIKTYIDK---NKV-KN--DIFAGNALIDMYCICADVEKAQ----------KD------- 129 (178)
Q Consensus 73 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~-~~--~~~~~~~ll~~~~~~~~~~~a~----------~~------- 129 (178)
.+++.+-..|...|++++|...++...+ ... .+ ...++..+-..|.+.|++++|. ++
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 5888899999999999999999988763 221 11 2368889999999999999998 22
Q ss_pred hhhHHHHHHHHHhcCChhHH-HHHHHHHHH
Q 036068 130 KFSWTTMIVGLAISGNGDKA-LDMFSQMLR 158 (178)
Q Consensus 130 ~~~~~~li~~~~~~~~~~~a-~~~~~~m~~ 158 (178)
..+|..+...|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788888999999999999 777877653
No 83
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.71 E-value=2.6e-07 Score=57.14 Aligned_cols=98 Identities=14% Similarity=0.186 Sum_probs=85.0
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 80 (178)
.+...|..+...+...|++++|...|+++.+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+..
T Consensus 33 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 111 (136)
T 2fo7_A 33 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGN 111 (136)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 4667788899999999999999999998753 467788889999999999999999999998765 335778888999
Q ss_pred HhccccchhhHHHHHHHHHHhC
Q 036068 81 ARANLRALDLGEWIKTYIDKNK 102 (178)
Q Consensus 81 ~~~~~~~~~~a~~~~~~m~~~~ 102 (178)
++.+.|++++|...++.+.+..
T Consensus 112 ~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 112 AYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHccHHHHHHHHHHHHccC
Confidence 9999999999999999888764
No 84
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.71 E-value=2e-07 Score=55.96 Aligned_cols=101 Identities=8% Similarity=0.045 Sum_probs=86.3
Q ss_pred CcchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCC--cHHHHHH
Q 036068 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMG--DEFTIVS 77 (178)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ 77 (178)
+.+...|..+...+.+.|++++|...|++..+ .+...|..+-..+...|++++|...|++..+.. +. +...+..
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 81 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA 81 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence 45667788899999999999999999997653 467788889999999999999999999988764 23 5788889
Q ss_pred HHHHhccc-cchhhHHHHHHHHHHhCcc
Q 036068 78 ILTARANL-RALDLGEWIKTYIDKNKVK 104 (178)
Q Consensus 78 ll~~~~~~-~~~~~a~~~~~~m~~~~~~ 104 (178)
+..++.+. |++++|.+.++...+....
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 99999999 9999999999999887654
No 85
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.69 E-value=8.8e-07 Score=68.31 Aligned_cols=154 Identities=10% Similarity=0.041 Sum_probs=122.2
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC--C-Ch-hHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE--R-DY-VLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 79 (178)
.+...|..++..+.+.|++++|.++|++..+ | +. ..|......+.+.|+.++|.++|++..+.. +.+...|....
T Consensus 319 ~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a 397 (530)
T 2ooe_A 319 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAA 397 (530)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHH
Confidence 4577899999999999999999999998753 3 33 478889998999999999999999988753 22333333222
Q ss_pred HH-hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------c-c----hhhHHHHHHHHHhc
Q 036068 80 TA-RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------K-D----KFSWTTMIVGLAIS 143 (178)
Q Consensus 80 ~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~-~----~~~~~~li~~~~~~ 143 (178)
.. +...|++++|..+|+...+..+ .++..|..++..+.+.|+.+.|. | + ...|...+.-....
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~ 476 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 476 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHS
T ss_pred HHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 22 3358999999999998887653 36889999999999999999886 2 2 23788888888889
Q ss_pred CChhHHHHHHHHHHHc
Q 036068 144 GNGDKALDMFSQMLRA 159 (178)
Q Consensus 144 ~~~~~a~~~~~~m~~~ 159 (178)
|+.+.+..+++++.+.
T Consensus 477 G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 477 GDLASILKVEKRRFTA 492 (530)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998864
No 86
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.69 E-value=5.8e-08 Score=72.04 Aligned_cols=151 Identities=13% Similarity=0.097 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCC--C-Ch----hHHHHHHHHHhhcCChhHHHHHHHHhHhC----C-CCCcHHHH
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPE--R-DY----VLWTAMIDGYLRVNRFREALTLFQEMQTS----N-IMGDEFTI 75 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~-~~~~~~~~ 75 (178)
.+..+...+.+.|++++|...|++..+ | +. ..|..+...|...|++++|...+++..+. + .......+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 344555666677777777777766542 2 22 35666666666777777777776665432 1 11223455
Q ss_pred HHHHHHhccccchhhHHHHHHHHHHhC-----cccchHHHHHHHHHHHhcCC-----------------hhhhc------
Q 036068 76 VSILTARANLRALDLGEWIKTYIDKNK-----VKNDIFAGNALIDMYCICAD-----------------VEKAQ------ 127 (178)
Q Consensus 76 ~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~ll~~~~~~~~-----------------~~~a~------ 127 (178)
..+...+...|++++|...++...+.. ......++..+-..|...|+ +++|.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 566666666677777766666554331 11223455556666666666 55554
Q ss_pred -----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 128 -----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 128 -----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
.....+..+...+...|++++|.+.+++..+
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 251 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLR 251 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 0122455555556666666666666655543
No 87
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.66 E-value=1.7e-07 Score=60.73 Aligned_cols=93 Identities=12% Similarity=0.078 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 84 (178)
.+..+-..+.+.|++++|...|++..+ | +...|..+-.+|...|++++|...|++..+.. +-+...|..+-.++.+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 344444444444444444444444331 2 34444444444444444444444444444432 1123444444444444
Q ss_pred ccchhhHHHHHHHHHHh
Q 036068 85 LRALDLGEWIKTYIDKN 101 (178)
Q Consensus 85 ~~~~~~a~~~~~~m~~~ 101 (178)
.|++++|...|+...+.
T Consensus 117 lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQH 133 (151)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 44444444444444443
No 88
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.66 E-value=2.1e-06 Score=72.45 Aligned_cols=141 Identities=12% Similarity=0.106 Sum_probs=99.6
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 84 (178)
+..+|..+-.++.+.|++++|.+-|.+- .|...|..++.++.+.|++++|.+.|..-.+.. ++....+.+..+|++
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAK 1179 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK 1179 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHh
Confidence 3567888888888888888888888664 577778888888888888888888887755543 232233347777777
Q ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc---cchhhHHHHHHHHHhcCChhHHHHHHHHH
Q 036068 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ---KDKFSWTTMIVGLAISGNGDKALDMFSQM 156 (178)
Q Consensus 85 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m 156 (178)
.+++++.+.+. + .++...|..+-..+...|+++.|. .....|..+...+++.|++++|.+.+++.
T Consensus 1180 l~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1180 TNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred hcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 77776544442 1 234445556677777777777776 34567777788888888888888777765
No 89
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.66 E-value=7.3e-07 Score=65.77 Aligned_cols=153 Identities=12% Similarity=-0.047 Sum_probs=117.4
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCC-----C----ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC----CCCCcH
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMPE-----R----DYVLWTAMIDGYLRVNRFREALTLFQEMQTS----NIMGDE 72 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~ 72 (178)
..+++.+-..+...|++++|.+.|++..+ + ...+++.+-..|...|++++|.+.|++..+. +.+...
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 261 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP 261 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence 45788899999999999999999887643 1 2346778888999999999999999997661 223346
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHhCc----ccchHHHHHHHHHHHhcCC---hhhhc----------cchhhHHH
Q 036068 73 FTIVSILTARANLRALDLGEWIKTYIDKNKV----KNDIFAGNALIDMYCICAD---VEKAQ----------KDKFSWTT 135 (178)
Q Consensus 73 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~----~~~~~~~~~ll~~~~~~~~---~~~a~----------~~~~~~~~ 135 (178)
.++..+..++.+.|++++|...++...+... +.....+..+-..|...++ ..+|. .....+..
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 341 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 7888899999999999999999998876432 2234455666666667777 55554 12345667
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 036068 136 MIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 136 li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
+...|...|++++|.+.|++..+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88999999999999999998865
No 90
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.66 E-value=1e-06 Score=57.01 Aligned_cols=127 Identities=11% Similarity=-0.029 Sum_probs=91.4
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccch
Q 036068 9 WTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88 (178)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 88 (178)
+..+.+.+...+.+.++.++ ...+...+..+-..+.+.|++++|...|++..... +-+...|..+-.++.+.|++
T Consensus 12 ~~~l~~~~~~~~~l~~al~l----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~ 86 (151)
T 3gyz_A 12 STAVIDAINSGATLKDINAI----PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQF 86 (151)
T ss_dssp HHHHHHHHHTSCCTGGGCCS----CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHCCCCHHHHhCC----CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccH
Confidence 34444554444444333221 11256677778888899999999999999988875 34677888888999999999
Q ss_pred hhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh
Q 036068 89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 166 (178)
Q Consensus 89 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 166 (178)
++|...|+...+..+. +...|..+-..|.+.|++++|...|++.++. .|+..
T Consensus 87 ~~Ai~~~~~al~l~P~------------------------~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 87 QQAADLYAVAFALGKN------------------------DYTPVFHTGQCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHHHHHHHHHSSS------------------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHHHHHHHhhCCC------------------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 9999999998887643 3445667777778888888888888888875 35543
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.64 E-value=4.3e-07 Score=64.84 Aligned_cols=152 Identities=8% Similarity=-0.073 Sum_probs=113.5
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCC-----CC----hhHHHHHHHHHhhc-CChhHHHHHHHHhHhCC----CCCc
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMPE-----RD----YVLWTAMIDGYLRV-NRFREALTLFQEMQTSN----IMGD 71 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~----~~~~ 71 (178)
..+|+.+...|.+.|++++|...|++..+ .+ ..+++.+-..|... |++++|...|++..+.. -.+.
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 46789999999999999999998887653 11 45788888999996 99999999999976531 1111
Q ss_pred -HHHHHHHHHHhccccchhhHHHHHHHHHHhCcccch------HHHHHHHHHHHhcCChhhhc----------cchh---
Q 036068 72 -EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDI------FAGNALIDMYCICADVEKAQ----------KDKF--- 131 (178)
Q Consensus 72 -~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~~~~~ll~~~~~~~~~~~a~----------~~~~--- 131 (178)
..++..+...+.+.|++++|...++...+....... ..+..+...|...|++++|. |+..
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 357888899999999999999999999886644322 25677788899999999987 2211
Q ss_pred ---hHHHHHHHHH--hcCChhHHHHHHHHHH
Q 036068 132 ---SWTTMIVGLA--ISGNGDKALDMFSQML 157 (178)
Q Consensus 132 ---~~~~li~~~~--~~~~~~~a~~~~~~m~ 157 (178)
.+..++..+. ..+++++|+..|+++.
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 2344555554 4567888888887654
No 92
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.63 E-value=2.5e-07 Score=68.62 Aligned_cols=152 Identities=13% Similarity=0.041 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHhcCChhHHHHHhccCCC---------CChhHHHHHHHHHhhcCChhHHHHHHHHhHhC----C-CCCcH
Q 036068 7 ISWTAIVSRYINRGQVDIARQCFDQMPE---------RDYVLWTAMIDGYLRVNRFREALTLFQEMQTS----N-IMGDE 72 (178)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~-~~~~~ 72 (178)
..|..+...+...|++++|.+.+++..+ .....+..+-..|...|++++|...+++..+. + .....
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 166 (411)
T 4a1s_A 87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG 166 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 4677788888888888888888776542 14456777777888888888888888776543 1 11224
Q ss_pred HHHHHHHHHhccccc-----------------hhhHHHHHHHHHHh----Cc-ccchHHHHHHHHHHHhcCChhhhc---
Q 036068 73 FTIVSILTARANLRA-----------------LDLGEWIKTYIDKN----KV-KNDIFAGNALIDMYCICADVEKAQ--- 127 (178)
Q Consensus 73 ~~~~~ll~~~~~~~~-----------------~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~--- 127 (178)
.++..+...+...|+ +++|.+.++...+. +. .....++..+-..|...|++++|.
T Consensus 167 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (411)
T 4a1s_A 167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH 246 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 466677777777888 77777777665432 11 122346667777778888887776
Q ss_pred -------c---c----hhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 128 -------K---D----KFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 128 -------~---~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
+ + ...+..+...+...|++++|.+.+++..+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 247 QERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1 1 22666777777777777777777777664
No 93
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.63 E-value=1.7e-06 Score=55.70 Aligned_cols=129 Identities=12% Similarity=-0.034 Sum_probs=93.5
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR 82 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 82 (178)
...|..+...+...|++++|...|++..+ .+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 44577788888889999999998887642 367778888888888999999999998887764 33567788888888
Q ss_pred ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 036068 83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQML 157 (178)
Q Consensus 83 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 157 (178)
.+.|++++|...++...+.... +...+.. -.....+.+.|++++|.+.+.+..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~---------------------~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMK---------------------YQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHH---------------------HHHHHHHHHHHHHHHHHHcccchH
Confidence 8899999999999888876533 2222211 122233455677778888777654
No 94
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.63 E-value=6.1e-07 Score=56.07 Aligned_cols=106 Identities=8% Similarity=0.036 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR 82 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 82 (178)
...|...-..+.+.|++++|.+.|++..+ .+...|..+-.+|.+.|++++|.+.|++..+.. +.+...|..+-.++
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 45677888899999999999999998653 478889999999999999999999999988765 34577888999999
Q ss_pred ccccchhhHHHHHHHHHHhCcccchHHHHHH
Q 036068 83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNAL 113 (178)
Q Consensus 83 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 113 (178)
.+.|++++|.+.|+...+..+. +...+..+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l 121 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPS-NEEAREGV 121 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcC-CHHHHHHH
Confidence 9999999999999999887543 34444433
No 95
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.63 E-value=6.5e-07 Score=64.39 Aligned_cols=149 Identities=8% Similarity=-0.030 Sum_probs=115.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCC-------C--ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC----CCCC-cHH
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPE-------R--DYVLWTAMIDGYLRVNRFREALTLFQEMQTS----NIMG-DEF 73 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~-------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~ 73 (178)
.|......|...|++++|.+.|.+..+ + -..+|+.+...|.+.|++++|...|++..+. |-.. -..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 577788889999999999988887642 1 2457888889999999999999999986442 2111 246
Q ss_pred HHHHHHHHhccccchhhHHHHHHHHHHhCccc-----chHHHHHHHHHHHhcCChhhhc----------cc-------hh
Q 036068 74 TIVSILTARANLRALDLGEWIKTYIDKNKVKN-----DIFAGNALIDMYCICADVEKAQ----------KD-------KF 131 (178)
Q Consensus 74 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~----------~~-------~~ 131 (178)
++..+-.+|.+ |++++|...++...+..... ...+++.+-..|.+.|++++|. ++ ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 77888888988 99999999998776542211 2567888899999999999997 11 22
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH
Q 036068 132 SWTTMIVGLAISGNGDKALDMFSQML 157 (178)
Q Consensus 132 ~~~~li~~~~~~~~~~~a~~~~~~m~ 157 (178)
.+..+...+...|++++|...|++.+
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 56666677778899999999999988
No 96
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.62 E-value=2.5e-06 Score=58.02 Aligned_cols=156 Identities=12% Similarity=0.046 Sum_probs=122.7
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCCC-ChhHHHHHHHHHhhcC----ChhHHHHHHHHhHhCCCCCcHHHHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPER-DYVLWTAMIDGYLRVN----RFREALTLFQEMQTSNIMGDEFTIVSI 78 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~~~~~~~~~~~~l 78 (178)
-++..+..+-..+...+++++|...|++.-+. +...+..|-..|.. + +.++|.+.|++..+.| +...+..+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~L 91 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVL 91 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 35667788888999999999999999987654 67777777778877 6 8999999999998876 55677777
Q ss_pred HHHhcc----ccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHh----cCChhhhc----------cchhhHHHHHHH
Q 036068 79 LTARAN----LRALDLGEWIKTYIDKNKVK-NDIFAGNALIDMYCI----CADVEKAQ----------KDKFSWTTMIVG 139 (178)
Q Consensus 79 l~~~~~----~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~----~~~~~~a~----------~~~~~~~~li~~ 139 (178)
-..|.. .+++++|.++++...+.|.. ..+..+..|-..|.. .++.++|. .+...+..|-..
T Consensus 92 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~ 171 (212)
T 3rjv_A 92 ARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMM 171 (212)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 777876 78999999999999887753 136677777777877 67777776 356677777777
Q ss_pred HHhc-C-----ChhHHHHHHHHHHHcCCCC
Q 036068 140 LAIS-G-----NGDKALDMFSQMLRASIKP 163 (178)
Q Consensus 140 ~~~~-~-----~~~~a~~~~~~m~~~g~~p 163 (178)
|... | +.++|...|++..+.|...
T Consensus 172 y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 172 FQQGEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp HHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred HHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 7654 3 8999999999998887533
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.62 E-value=4.7e-07 Score=58.28 Aligned_cols=115 Identities=10% Similarity=-0.069 Sum_probs=93.1
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR 82 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 82 (178)
...+-.+-..|.+.|++++|.+.|++..+ .+...|..+-..|.+.|++++|...|++..+.. +-+...+..+...+
T Consensus 31 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 109 (150)
T 4ga2_A 31 SIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELL 109 (150)
T ss_dssp HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 44566788999999999999999998753 478899999999999999999999999998864 23577888999999
Q ss_pred ccccchhhHHHH-HHHHHHhCcccchHHHHHHHHHHHhcCC
Q 036068 83 ANLRALDLGEWI-KTYIDKNKVKNDIFAGNALIDMYCICAD 122 (178)
Q Consensus 83 ~~~~~~~~a~~~-~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 122 (178)
.+.|+++++.+. ++...+..+ -++.+|...-..+.+.|+
T Consensus 110 ~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 110 CKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCCC
T ss_pred HHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCc
Confidence 999999876655 577777654 357777777777766664
No 98
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.62 E-value=2.8e-07 Score=65.80 Aligned_cols=154 Identities=13% Similarity=0.082 Sum_probs=120.1
Q ss_pred hhHHHHHHHHHHhcCC--------------------hhHHHHHhccCCC-----C----ChhHHHHHHHHHhhcCChhHH
Q 036068 6 VISWTAIVSRYINRGQ--------------------VDIARQCFDQMPE-----R----DYVLWTAMIDGYLRVNRFREA 56 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m~~-----~----~~~~~~~li~~~~~~~~~~~a 56 (178)
..++..+...+...|+ +++|.+.+++..+ + ....+..+...+...|++++|
T Consensus 123 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 202 (338)
T 3ro2_A 123 ARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 202 (338)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 3478888899999999 8999888877542 1 344788888899999999999
Q ss_pred HHHHHHhHhC----CC-CCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcc-----cchHHHHHHHHHHHhcCChhhh
Q 036068 57 LTLFQEMQTS----NI-MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVK-----NDIFAGNALIDMYCICADVEKA 126 (178)
Q Consensus 57 ~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a 126 (178)
.+.+++..+. +. .....++..+...+...|++++|...++...+.... ....++..+...|...|++++|
T Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 282 (338)
T 3ro2_A 203 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 282 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999987543 11 112347788888999999999999999877653211 1256778888899999999999
Q ss_pred c-------------c----chhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 127 Q-------------K----DKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 127 ~-------------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
. . ...++..+...+.+.|++++|.+.+++..+.
T Consensus 283 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 283 IDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 7 1 1447778889999999999999999998864
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.61 E-value=3.3e-07 Score=73.04 Aligned_cols=139 Identities=16% Similarity=0.019 Sum_probs=114.7
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 80 (178)
.+...|..+...+.+.|++++|.+.|++..+ .+...|..+-..|.+.|++++|.+.|++..+.. +-+...+..+-.
T Consensus 431 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~ 509 (681)
T 2pzi_A 431 ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAA 509 (681)
T ss_dssp TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHH
T ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 4566788899999999999999999998764 377889999999999999999999999988865 235678889999
Q ss_pred HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------c-chhhHHHHHHHHHhcCC
Q 036068 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------K-DKFSWTTMIVGLAISGN 145 (178)
Q Consensus 81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~-~~~~~~~li~~~~~~~~ 145 (178)
++.+.|++++ .+.|+...+.... +...|..+-..|.+.|++++|. | +...|..+...+...++
T Consensus 510 ~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 510 TAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999 9999999987643 5778999999999999999997 3 35666667777666554
No 100
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.61 E-value=3.6e-06 Score=52.48 Aligned_cols=106 Identities=9% Similarity=-0.008 Sum_probs=83.6
Q ss_pred hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068 37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116 (178)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 116 (178)
...+...-..|.+.|++++|.+.|++..+.. +.+...|..+-.++.+.|++++|...++...+....
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------------ 79 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK------------ 79 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh------------
Confidence 3456677788899999999999999987764 346788888889999999999999999888876432
Q ss_pred HHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHH
Q 036068 117 YCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYV 169 (178)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~ 169 (178)
+...|..+...+...|++++|.+.|++.++. .|+.....
T Consensus 80 ------------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--~P~~~~a~ 118 (126)
T 4gco_A 80 ------------FIKGYIRKAACLVAMREWSKAQRAYEDALQV--DPSNEEAR 118 (126)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred ------------hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcCCHHHH
Confidence 3445777788888899999999999998874 57654443
No 101
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.61 E-value=1.4e-06 Score=64.26 Aligned_cols=148 Identities=9% Similarity=-0.119 Sum_probs=114.3
Q ss_pred HHHHHHhcCChhHHHHHhccCCC-----C----ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC----C--CCCcHHHHH
Q 036068 12 IVSRYINRGQVDIARQCFDQMPE-----R----DYVLWTAMIDGYLRVNRFREALTLFQEMQTS----N--IMGDEFTIV 76 (178)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~--~~~~~~~~~ 76 (178)
.-..+...|++++|.+.|++..+ + ...++..+-..|...|++++|...+++..+. + ......++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 45567789999999999987643 2 3457888889999999999999999886542 1 111245788
Q ss_pred HHHHHhccccchhhHHHHHHHHHHhCc-----ccchHHHHHHHHHHHhcCChhhhc-------------c----chhhHH
Q 036068 77 SILTARANLRALDLGEWIKTYIDKNKV-----KNDIFAGNALIDMYCICADVEKAQ-------------K----DKFSWT 134 (178)
Q Consensus 77 ~ll~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~~~~ll~~~~~~~~~~~a~-------------~----~~~~~~ 134 (178)
.+-.+|...|++++|...++...+... .....++..+-..|...|++++|. . ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888899999999999999987765421 112357888889999999999987 1 234577
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 135 TMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 135 ~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
.+...+.+.|++++|.+.+++..+.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~ 293 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAY 293 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 8889999999999999999988753
No 102
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.61 E-value=2.8e-07 Score=65.79 Aligned_cols=28 Identities=11% Similarity=0.198 Sum_probs=15.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 132 SWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 132 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
++..+...+...|++++|.+.+++..+.
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~ 252 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLL 252 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555555555556666666666555554
No 103
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.60 E-value=2.3e-06 Score=72.30 Aligned_cols=139 Identities=13% Similarity=0.089 Sum_probs=92.4
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC--CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 81 (178)
-|...|..++.++.+.|++++|.+.+...++ ++....+.+..+|++.+++++...+. . .++...|..+-..
T Consensus 1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~ 1204 (1630)
T 1xi4_A 1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDR 1204 (1630)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHH
Confidence 4566788899999999999999999965442 23333334777777777766433332 1 2344555566666
Q ss_pred hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc------c---------------------------
Q 036068 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ------K--------------------------- 128 (178)
Q Consensus 82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~------~--------------------------- 128 (178)
|...|++++|..+|+.. ..|..+...|++.|+++.|. .
T Consensus 1205 le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~ 1275 (1630)
T 1xi4_A 1205 CYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLH 1275 (1630)
T ss_pred HHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 77777777777776653 35666666666666666665 2
Q ss_pred ---chhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 129 ---DKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 129 ---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
+...+..++..|.+.|.+++|..+++.-+.
T Consensus 1276 Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1276 IVVHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 333455777788888999999999977654
No 104
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.59 E-value=3.9e-07 Score=67.12 Aligned_cols=95 Identities=11% Similarity=0.062 Sum_probs=44.3
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCC--C-C----hhHHHHHHHHHhhcCChhHHHHHHHHhHhC----CCCC-cH
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPE--R-D----YVLWTAMIDGYLRVNRFREALTLFQEMQTS----NIMG-DE 72 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~ 72 (178)
....+...-..+.+.|++++|...|++..+ | + ...|..+...|...|++++|...+++.... +-.| ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 333444455555555555555555554431 1 1 234444555555555555555555543221 1111 12
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHH
Q 036068 73 FTIVSILTARANLRALDLGEWIKTYID 99 (178)
Q Consensus 73 ~~~~~ll~~~~~~~~~~~a~~~~~~m~ 99 (178)
.++..+...+...|++++|...++...
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al 114 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHL 114 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444445555555555555554443
No 105
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.59 E-value=5.6e-07 Score=66.26 Aligned_cols=151 Identities=13% Similarity=0.051 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCC-----CC----hhHHHHHHHHHhhcCC--------------------hhHHHH
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPE-----RD----YVLWTAMIDGYLRVNR--------------------FREALT 58 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~~~--------------------~~~a~~ 58 (178)
+|..+...+...|++++|...+++..+ ++ ..++..+-..|...|+ +++|.+
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 344455555555555555555544332 11 2244455555555555 555555
Q ss_pred HHHHhHhC----CCCC-cHHHHHHHHHHhccccchhhHHHHHHHHHHhCcc-----cchHHHHHHHHHHHhcCChhhhc-
Q 036068 59 LFQEMQTS----NIMG-DEFTIVSILTARANLRALDLGEWIKTYIDKNKVK-----NDIFAGNALIDMYCICADVEKAQ- 127 (178)
Q Consensus 59 ~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~- 127 (178)
.+++..+. +-.| ...++..+...+...|++++|...++...+.... ....++..+...|...|++++|.
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 55543221 1111 1234445555555556666666555554432110 01224555555555666666554
Q ss_pred ---------c-------chhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 128 ---------K-------DKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 128 ---------~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
+ ...++..+...+...|++++|.+.+++..+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 0 134455555556666666666666655543
No 106
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.56 E-value=3.3e-06 Score=62.24 Aligned_cols=148 Identities=8% Similarity=-0.045 Sum_probs=115.4
Q ss_pred HHHHHHhcCChhHHHHHhccCCC-----C----ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC----CC-CC-cHHHHH
Q 036068 12 IVSRYINRGQVDIARQCFDQMPE-----R----DYVLWTAMIDGYLRVNRFREALTLFQEMQTS----NI-MG-DEFTIV 76 (178)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~-~~~~~~ 76 (178)
.-..+...|++++|...|++..+ + ....+..+-..|...|++++|...+++..+. +- .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456789999999999987643 2 3457888888999999999999999886542 11 11 256788
Q ss_pred HHHHHhccccchhhHHHHHHHHHHh----Ccc-cchHHHHHHHHHHHhcCChhhhc----------------cchhhHHH
Q 036068 77 SILTARANLRALDLGEWIKTYIDKN----KVK-NDIFAGNALIDMYCICADVEKAQ----------------KDKFSWTT 135 (178)
Q Consensus 77 ~ll~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~----------------~~~~~~~~ 135 (178)
.+-.+|...|++++|.+.++...+. +.. ....++..+-..|...|++++|. ....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 8889999999999999999877653 211 22457888888999999999997 13556778
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc
Q 036068 136 MIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 136 li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
+...+.+.|++++|.+.+++..+.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 889999999999999999999874
No 107
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.56 E-value=1.2e-06 Score=56.52 Aligned_cols=89 Identities=8% Similarity=-0.055 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068 37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116 (178)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 116 (178)
...+..+-..+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...++...+... .+...+..+...
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 4456667777788888888888888877654 23567777777888888888888888888777653 356677777888
Q ss_pred HHhcCChhhhc
Q 036068 117 YCICADVEKAQ 127 (178)
Q Consensus 117 ~~~~~~~~~a~ 127 (178)
+.+.|++++|.
T Consensus 91 ~~~~~~~~~A~ 101 (166)
T 1a17_A 91 NMALGKFRAAL 101 (166)
T ss_dssp HHHTTCHHHHH
T ss_pred HHHhccHHHHH
Confidence 88888888876
No 108
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.56 E-value=9.5e-07 Score=55.31 Aligned_cols=99 Identities=10% Similarity=-0.015 Sum_probs=84.1
Q ss_pred CcchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHH
Q 036068 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSIL 79 (178)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 79 (178)
+.+...|..+...+.+.|++++|...|++..+ .+...|..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 46778889999999999999999999997643 367788889999999999999999999988765 33577888899
Q ss_pred HHhccccchhhHHHHHHHHHHhC
Q 036068 80 TARANLRALDLGEWIKTYIDKNK 102 (178)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~m~~~~ 102 (178)
.++.+.|++++|...++...+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHC
Confidence 99999999999999998887654
No 109
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=2.8e-06 Score=53.61 Aligned_cols=109 Identities=17% Similarity=0.038 Sum_probs=84.5
Q ss_pred CcchhHHHHHHHHHHhcCChhHHHHHhccCCC--CC----hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHH
Q 036068 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPE--RD----YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIV 76 (178)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 76 (178)
+.+...+..+...+.+.|++++|.+.|++..+ |+ ...|..+...|...|++++|...+++..+.. +.+...+.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 34667788888999999999999999987653 44 5678888888899999999999999887764 23567778
Q ss_pred HHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHH
Q 036068 77 SILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNAL 113 (178)
Q Consensus 77 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 113 (178)
.+..++.+.|++++|...++...+.... +...+..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 139 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEAL 139 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHH
Confidence 8888889999999999999888876532 34444433
No 110
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.55 E-value=1.1e-05 Score=60.92 Aligned_cols=154 Identities=12% Similarity=0.019 Sum_probs=100.1
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCC------------CChhHHHHHHHHHhhcCChhHHHHHHHHhHhC-----C
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPE------------RDYVLWTAMIDGYLRVNRFREALTLFQEMQTS-----N 67 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~ 67 (178)
.+..||.+-..+...|++++|++.|++..+ ....+|+.+-..|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 345688888999999999999888876421 24567888888999999999999888876542 1
Q ss_pred -CCC-cHHHHHHHHHHhc--cccchhhHHHHHHHHHHhCcccchHHHHHHHHH---HHhcCChhhhc-------------
Q 036068 68 -IMG-DEFTIVSILTARA--NLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM---YCICADVEKAQ------------- 127 (178)
Q Consensus 68 -~~~-~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~------------- 127 (178)
..+ ...++...-.++. ..+++++|...|+...+..+. ++..+..+... +...++.++|.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 011 2344544433433 345678888888877766532 33334333333 22334434332
Q ss_pred ------------------------------------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 128 ------------------------------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 128 ------------------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
.+...+..+...|...|++++|.+.+++..+.
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 24556677777788888888888888887764
No 111
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.54 E-value=8.5e-07 Score=58.25 Aligned_cols=117 Identities=8% Similarity=0.083 Sum_probs=72.2
Q ss_pred hcCChhHHHHHhccCC---CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH-hccccch--hhH
Q 036068 18 NRGQVDIARQCFDQMP---ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA-RANLRAL--DLG 91 (178)
Q Consensus 18 ~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~~~~--~~a 91 (178)
..|++++|...+++.. ..+...|..+-..|...|++++|...|++..+.. +.+...+..+..+ +.+.|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 4556666666665543 2355666667777777777777777777766543 2244555556666 5566666 777
Q ss_pred HHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 92 EWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 92 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
...++...+..+. +...+..+...+...|++++|...|++..+.
T Consensus 101 ~~~~~~al~~~p~------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDSN------------------------EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCTT------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCC------------------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777766665422 2344566667777888888888888888764
No 112
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.54 E-value=2.5e-06 Score=51.43 Aligned_cols=108 Identities=13% Similarity=0.073 Sum_probs=87.5
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 80 (178)
+++..|..+...+...|++++|...|++..+ .+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3466788899999999999999999998753 377788888899999999999999999988764 335778888899
Q ss_pred HhccccchhhHHHHHHHHHHhCcccchHHHHHH
Q 036068 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNAL 113 (178)
Q Consensus 81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 113 (178)
++.+.|++++|...++...+..+. +...+..+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 112 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEAN-NPQLKEGL 112 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHH
Confidence 999999999999999998876543 34444433
No 113
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.53 E-value=1.7e-06 Score=55.59 Aligned_cols=97 Identities=7% Similarity=-0.024 Sum_probs=67.7
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 81 (178)
+...+..+...+.+.|++++|...|++... .+...|..+-.+|...|++++|.+.|++..+.. +-+...+..+-.+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 445566677777777888887777776542 366667777777777777888877777776654 2245666677777
Q ss_pred hccccchhhHHHHHHHHHHhC
Q 036068 82 RANLRALDLGEWIKTYIDKNK 102 (178)
Q Consensus 82 ~~~~~~~~~a~~~~~~m~~~~ 102 (178)
+...|++++|...|+...+..
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 777778877777777766543
No 114
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.53 E-value=5.8e-06 Score=59.52 Aligned_cols=134 Identities=7% Similarity=-0.089 Sum_probs=98.7
Q ss_pred HHHHhccCC---CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCC-CCcHHHHHHHHHHhccccchhhHHHHHHHHHH
Q 036068 25 ARQCFDQMP---ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI-MGDEFTIVSILTARANLRALDLGEWIKTYIDK 100 (178)
Q Consensus 25 a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 100 (178)
+...|++.. .++..++..+-.++...|++++|++++.+-...+- .-+...+...+..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 455555443 24555666888899999999999999999866653 23667888899999999999999999999988
Q ss_pred hCc---ccchHHHHHHHHH--HHhcC--Chhhhc----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 101 NKV---KNDIFAGNALIDM--YCICA--DVEKAQ----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 101 ~~~---~~~~~~~~~ll~~--~~~~~--~~~~a~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
... ..+..+...+..+ ....| +..+|. |+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 743 1135666666666 33334 777776 4423344555588999999999999998765
No 115
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.53 E-value=3.4e-06 Score=60.07 Aligned_cols=147 Identities=14% Similarity=0.034 Sum_probs=106.3
Q ss_pred HHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCc
Q 036068 24 IARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV 103 (178)
Q Consensus 24 ~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 103 (178)
...+.++.....+...+..+-..+.+.|++++|...|++..+.. +-+...+..+...+.+.|++++|...++......+
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p 182 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ 182 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc
Confidence 34444444444456667778888899999999999999998875 33567888999999999999999999998877654
Q ss_pred ccchHHHHH-HHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---hhHH
Q 036068 104 KNDIFAGNA-LIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPD---EVAY 168 (178)
Q Consensus 104 ~~~~~~~~~-ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~t~ 168 (178)
+...... ....+.+.++.+.|. .+...+..+...+...|++++|.+.|.++++. .|+ ...+
T Consensus 183 --~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~ 258 (287)
T 3qou_A 183 --DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTR 258 (287)
T ss_dssp --SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHH
T ss_pred --chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHH
Confidence 3332222 222355555555443 36788899999999999999999999999985 354 3445
Q ss_pred HHHHhhh
Q 036068 169 VGVLSAC 175 (178)
Q Consensus 169 ~~li~a~ 175 (178)
..+...+
T Consensus 259 ~~l~~~~ 265 (287)
T 3qou_A 259 XTFQEIL 265 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444443
No 116
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.52 E-value=2.3e-06 Score=55.54 Aligned_cols=99 Identities=7% Similarity=-0.085 Sum_probs=82.2
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 80 (178)
.+...|..+...+.+.|++++|.+.|++..+ .+...|..+-..|.+.|++++|...|++..+.. +-+...|..+-.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4566788888999999999999999987653 377788888889999999999999999988765 335778888888
Q ss_pred HhccccchhhHHHHHHHHHHhCc
Q 036068 81 ARANLRALDLGEWIKTYIDKNKV 103 (178)
Q Consensus 81 ~~~~~~~~~~a~~~~~~m~~~~~ 103 (178)
++.+.|++++|...|+...+...
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHccCHHHHHHHHHHHHHhCC
Confidence 99999999999999988887654
No 117
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.52 E-value=2.3e-06 Score=52.98 Aligned_cols=97 Identities=9% Similarity=0.015 Sum_probs=82.8
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 81 (178)
+...|..+-..+.+.|++++|...|++..+ .+...|..+-.+|.+.|++++|...|++..+.. +-+...+..+-.+
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 456788888999999999999999997653 377889999999999999999999999988765 3357788889999
Q ss_pred hccccchhhHHHHHHHHHHhC
Q 036068 82 RANLRALDLGEWIKTYIDKNK 102 (178)
Q Consensus 82 ~~~~~~~~~a~~~~~~m~~~~ 102 (178)
+...|++++|...++...+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhC
Confidence 999999999999999888765
No 118
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.51 E-value=4.5e-06 Score=50.78 Aligned_cols=98 Identities=12% Similarity=0.147 Sum_probs=79.8
Q ss_pred hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068 37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116 (178)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 116 (178)
...|..+...+...|++++|.+.|++..+.. +.+..++..+..++.+.|++++|..+++.+.+....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------------ 75 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------------ 75 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc------------
Confidence 5678888889999999999999999988764 346778888999999999999999999988876422
Q ss_pred HHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 117 YCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
+..++..+...+...|++++|.+.++++.+.
T Consensus 76 ------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 76 ------------NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 2334566777788888999999999998875
No 119
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.49 E-value=5.5e-07 Score=68.01 Aligned_cols=96 Identities=8% Similarity=-0.054 Sum_probs=43.8
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHhCcccchH--HHHHHHH-HHHhcCChhhhc----------------------
Q 036068 73 FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIF--AGNALID-MYCICADVEKAQ---------------------- 127 (178)
Q Consensus 73 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~-~~~~~~~~~~a~---------------------- 127 (178)
.++..+-..+.+.|++++|...|+...+....+... .+..+.. .+...|+.++|.
T Consensus 335 ~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~ 414 (472)
T 4g1t_A 335 RVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDK 414 (472)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred hhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 344555566667777777777777766654333211 1111111 223455555553
Q ss_pred -------------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCChhHH
Q 036068 128 -------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRAS-IKPDEVAY 168 (178)
Q Consensus 128 -------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~t~ 168 (178)
.+..+|+.+-..|...|++++|.+.|++.++.| ..|+..++
T Consensus 415 l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 415 LQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 256778888888888899999999998888753 55665544
No 120
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.49 E-value=7.8e-06 Score=50.45 Aligned_cols=99 Identities=12% Similarity=0.031 Sum_probs=80.5
Q ss_pred ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID 115 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 115 (178)
+...|..+...+.+.|++++|.+.|++..+.. +.+...+..+..++.+.|++++|.+.++...+....
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----------- 82 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT----------- 82 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-----------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----------
Confidence 66788889999999999999999999988764 336788889999999999999999999988886432
Q ss_pred HHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 116 MYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 116 ~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
+...|..+...+.+.|++++|.+.|++..+.
T Consensus 83 -------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 83 -------------FIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp -------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 2334566667777888888888888888764
No 121
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.48 E-value=3e-06 Score=65.93 Aligned_cols=122 Identities=9% Similarity=0.030 Sum_probs=106.0
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 80 (178)
.+...|..+...+.+.|++++|.+.|++..+ .+...|..+-..|.+.|++++|.+.|++..+.. +-+...+..+..
T Consensus 21 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 99 (568)
T 2vsy_A 21 QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGH 99 (568)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3567889999999999999999999998654 367789999999999999999999999988865 335778899999
Q ss_pred HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhc---CChhhhc
Q 036068 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC---ADVEKAQ 127 (178)
Q Consensus 81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~ 127 (178)
++.+.|++++|.+.++...+... .+...+..+...+.+. |+.++|.
T Consensus 100 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~ 148 (568)
T 2vsy_A 100 ALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLS 148 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHH
Confidence 99999999999999999988764 3577888999999999 8888876
No 122
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.48 E-value=5.1e-06 Score=50.98 Aligned_cols=99 Identities=10% Similarity=0.012 Sum_probs=78.2
Q ss_pred ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID 115 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 115 (178)
+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|.+.++...+....
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----------- 78 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA----------- 78 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-----------
Confidence 55677888889999999999999999987764 336778888899999999999999999988876432
Q ss_pred HHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 116 MYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 116 ~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
+...+..+...+...|++++|...|++..+.
T Consensus 79 -------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 79 -------------YSKAYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp -------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 1234556666777788888888888888765
No 123
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.47 E-value=1.3e-06 Score=55.55 Aligned_cols=97 Identities=12% Similarity=0.012 Sum_probs=64.0
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 81 (178)
+...+..+...+.+.|++++|...|++... | +...|..+-..|.+.|++++|...|++..+.. +-+...+..+-.+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 344555666677777777777777776542 2 55666666677777777777777777766654 2345566666677
Q ss_pred hccccchhhHHHHHHHHHHhC
Q 036068 82 RANLRALDLGEWIKTYIDKNK 102 (178)
Q Consensus 82 ~~~~~~~~~a~~~~~~m~~~~ 102 (178)
+...|++++|...++...+..
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 777777777777777666543
No 124
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.46 E-value=5.8e-06 Score=54.33 Aligned_cols=123 Identities=9% Similarity=-0.021 Sum_probs=93.6
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC--CChhHHHHHHHH-HhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDG-YLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 80 (178)
.+...|..+...+.+.|++++|...|++..+ |+...+..+... +.+.++..+|...|++..+.. +-+...+..+-.
T Consensus 38 ~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~ 116 (176)
T 2r5s_A 38 SRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAV 116 (176)
T ss_dssp TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4567788999999999999999999999875 333333222111 223233455788888887764 225788889999
Q ss_pred HhccccchhhHHHHHHHHHHhCccc-chHHHHHHHHHHHhcCChhhhc
Q 036068 81 ARANLRALDLGEWIKTYIDKNKVKN-DIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 81 ~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
++.+.|++++|...++...+..+.+ +...+..+...+...|+.++|.
T Consensus 117 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 117 QYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 9999999999999999999887654 4678999999999999998764
No 125
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.44 E-value=5.4e-06 Score=60.47 Aligned_cols=119 Identities=11% Similarity=0.027 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc--------------HHHHHHHHHHhccccchhhHHHHHHHHHHhC
Q 036068 37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD--------------EFTIVSILTARANLRALDLGEWIKTYIDKNK 102 (178)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 102 (178)
...|..+-..|.+.|++++|...|++..+..-... ...|..+-.++.+.|++++|...++...+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 33444455555555555555555555544321110 2455555555555555555555555555543
Q ss_pred cccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHH-HHHHHHH
Q 036068 103 VKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKA-LDMFSQM 156 (178)
Q Consensus 103 ~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a-~~~~~~m 156 (178)
+ .+...+..+-.+|...|++++|. .+...+..+...+.+.|+.+++ ..+|++|
T Consensus 227 p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 227 S-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 23445555555555555555554 1344555555666666666655 3344444
No 126
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.43 E-value=1.3e-05 Score=49.41 Aligned_cols=98 Identities=10% Similarity=-0.063 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068 37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116 (178)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 116 (178)
...|..+-..+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|...++...+..+.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------------ 70 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN------------ 70 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------------
Confidence 3456677788889999999999999988765 346788888999999999999999999988876532
Q ss_pred HHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 117 YCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
+...|..+...+...|++++|.+.|++..+.
T Consensus 71 ------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 71 ------------FVRAYIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 2334566667777788888888888887754
No 127
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.43 E-value=1.5e-06 Score=53.50 Aligned_cols=111 Identities=8% Similarity=-0.020 Sum_probs=87.9
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCC--CCc----HHHH
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI--MGD----EFTI 75 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~~~~ 75 (178)
....|..+...+...|++++|...|++..+ .+...+..+...+...|++++|...+++...... .++ ..++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 356788889999999999999999997653 4677888889999999999999999999876531 112 6778
Q ss_pred HHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHH
Q 036068 76 VSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117 (178)
Q Consensus 76 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 117 (178)
..+..++.+.|++++|.+.++...+.. |+......+-...
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 122 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 888899999999999999999988865 3555555554443
No 128
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.43 E-value=8.8e-06 Score=52.16 Aligned_cols=98 Identities=11% Similarity=-0.011 Sum_probs=73.6
Q ss_pred ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID 115 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 115 (178)
+...+..+-..+.+.|++++|...|++..... +.+...|..+-.++.+.|++++|...++...+..+. ++.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~------- 90 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPR------- 90 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTH-------
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-Cch-------
Confidence 55667777888889999999999999987765 336778888888899999999999999988876532 233
Q ss_pred HHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 116 MYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 116 ~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
.|..+...+...|++++|...|++.++
T Consensus 91 ----------------~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 91 ----------------FPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp ----------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555566666666777777766665
No 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.42 E-value=2.3e-06 Score=62.43 Aligned_cols=132 Identities=11% Similarity=0.015 Sum_probs=108.7
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCC--C-C---------------hhHHHHHHHHHhhcCChhHHHHHHHHhHhC
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPE--R-D---------------YVLWTAMIDGYLRVNRFREALTLFQEMQTS 66 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 66 (178)
+...|..+-..+.+.|++++|...|++..+ | + ...|..+-..|.+.|++++|...+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355788899999999999999999998653 3 2 478999999999999999999999999887
Q ss_pred CCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHH
Q 036068 67 NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGL 140 (178)
Q Consensus 67 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~ 140 (178)
. +.+...+..+-.++.+.|++++|...|+...+..+. +...+..+-..+.+.|+.+++. ...|..++..+
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~--~~~~~~~~~~~ 295 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLARE--KKLYANMFERL 295 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHh
Confidence 5 346788999999999999999999999999987643 5778888999999999988774 22444444433
No 130
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.42 E-value=2.4e-05 Score=54.56 Aligned_cols=124 Identities=10% Similarity=-0.088 Sum_probs=99.7
Q ss_pred CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc----HHHHHHHHHHhccccchhhHHHHHHHHHHhCcc--cch
Q 036068 34 ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD----EFTIVSILTARANLRALDLGEWIKTYIDKNKVK--NDI 107 (178)
Q Consensus 34 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~~ 107 (178)
..+...+-.+-..+.+.|++++|...|++..+.. |+ ...+..+..++.+.|++++|...++...+..+. ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 3466677778888899999999999999998864 33 567888889999999999999999999987542 235
Q ss_pred HHHHHHHHHHHh--------cCChhhhc----------cc-hhhH-----------------HHHHHHHHhcCChhHHHH
Q 036068 108 FAGNALIDMYCI--------CADVEKAQ----------KD-KFSW-----------------TTMIVGLAISGNGDKALD 151 (178)
Q Consensus 108 ~~~~~ll~~~~~--------~~~~~~a~----------~~-~~~~-----------------~~li~~~~~~~~~~~a~~ 151 (178)
..+..+-..+.+ .|++++|. |+ ...+ ..+...|.+.|++++|..
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 567777778888 89999987 33 3333 445678899999999999
Q ss_pred HHHHHHHc
Q 036068 152 MFSQMLRA 159 (178)
Q Consensus 152 ~~~~m~~~ 159 (178)
.|++.++.
T Consensus 170 ~~~~~l~~ 177 (261)
T 3qky_A 170 TYEAVFDA 177 (261)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.40 E-value=3.3e-06 Score=60.02 Aligned_cols=98 Identities=10% Similarity=-0.013 Sum_probs=84.4
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILT 80 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 80 (178)
.+...+..+...+.+.|++++|...|++..+ | +...|..+-..|.+.|++++|.+.+++..+.. +-+...+..+..
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4567788899999999999999999998753 4 78889999999999999999999999988764 335678888999
Q ss_pred HhccccchhhHHHHHHHHHHhC
Q 036068 81 ARANLRALDLGEWIKTYIDKNK 102 (178)
Q Consensus 81 ~~~~~~~~~~a~~~~~~m~~~~ 102 (178)
++.+.|++++|...++...+..
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999998877654
No 132
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.40 E-value=1.9e-05 Score=49.20 Aligned_cols=114 Identities=6% Similarity=-0.090 Sum_probs=84.3
Q ss_pred hHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHH
Q 036068 38 VLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117 (178)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 117 (178)
..+.-|-..+.+.|++++|++.|++..+.. +-+...|..+-.+|.+.|++++|.+.++...+..... ...+..+.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~a--- 83 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET-RADYKLIA--- 83 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCCHHHHH---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-chhhHHHH---
Confidence 356677788899999999999999987764 3356788889999999999999999998887654321 11122222
Q ss_pred HhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHH
Q 036068 118 CICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171 (178)
Q Consensus 118 ~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 171 (178)
.+|..+-..+...|++++|++.|++.++. .||..+...|
T Consensus 84 -------------~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 84 -------------KAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp -------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred -------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 23555667788899999999999998864 5777665544
No 133
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.40 E-value=9.6e-06 Score=54.56 Aligned_cols=118 Identities=10% Similarity=-0.070 Sum_probs=95.2
Q ss_pred CcchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCC-----------
Q 036068 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI----------- 68 (178)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----------- 68 (178)
+|+...|..+...+.+.|++++|.+.|++..+ .+...|..+-..|.+.|++++|.+.|++..+..-
T Consensus 34 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 113 (213)
T 1hh8_A 34 DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILG 113 (213)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGT
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhc
Confidence 35778899999999999999999999998653 4777899999999999999999999999877531
Q ss_pred ---CC-cHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhc
Q 036068 69 ---MG-DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120 (178)
Q Consensus 69 ---~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 120 (178)
.| ....+..+..++.+.|++++|...++...+.............+..+.+.
T Consensus 114 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~ 169 (213)
T 1hh8_A 114 LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQ 169 (213)
T ss_dssp BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHHTT
T ss_pred cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHHHHHHHHhc
Confidence 11 23678888999999999999999999999877655555555555555443
No 134
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.39 E-value=1.2e-05 Score=50.90 Aligned_cols=98 Identities=12% Similarity=-0.017 Sum_probs=72.7
Q ss_pred ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID 115 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 115 (178)
+...+..+-..+.+.|++++|...|++..... +.+...|..+-.++.+.|++++|...++...+..+. ++.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~------- 87 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPR------- 87 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTH-------
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcH-------
Confidence 44556667778889999999999999988765 336778888888899999999999999998887533 233
Q ss_pred HHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 116 MYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 116 ~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
.|..+...+...|++++|...|++.++
T Consensus 88 ----------------~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 88 ----------------FPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp ----------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555566666666677777766654
No 135
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.39 E-value=1.7e-05 Score=49.36 Aligned_cols=99 Identities=6% Similarity=-0.154 Sum_probs=77.8
Q ss_pred CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHH
Q 036068 35 RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALI 114 (178)
Q Consensus 35 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 114 (178)
.+...|..+-..+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...++...+.... +
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~-------- 76 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-S-------- 76 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C--------
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-h--------
Confidence 467788888899999999999999999987765 335778888999999999999999999988886532 2
Q ss_pred HHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 115 DMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 115 ~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
...|..+...+...|++++|...|++..+
T Consensus 77 ---------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 77 ---------------VKAHFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp ---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33455666666777777777777777764
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.39 E-value=1.2e-05 Score=53.55 Aligned_cols=151 Identities=11% Similarity=-0.040 Sum_probs=111.9
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC---------CChhHHHHHHHHHhhcCChhHHHHHHHHhHhC----CCCC
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---------RDYVLWTAMIDGYLRVNRFREALTLFQEMQTS----NIMG 70 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~ 70 (178)
....++..+...+...|++++|...+++..+ .....+..+-..+...|++++|.+.+++..+. +-.|
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 103 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence 4567889999999999999999999887653 14557888888999999999999999986543 2122
Q ss_pred --cHHHHHHHHHHhccccchhhHHHHHHHHHHh----Ccc-cchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhc
Q 036068 71 --DEFTIVSILTARANLRALDLGEWIKTYIDKN----KVK-NDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAIS 143 (178)
Q Consensus 71 --~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~ 143 (178)
....+..+-..+...|++++|...++...+. +.. .-..++..+-..+.+.|++++|. ..+...+..+.+.
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~---~~~~~al~~~~~~ 180 (203)
T 3gw4_A 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQ---QHWLRARDIFAEL 180 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHH---HHHHHHHHHHHHc
Confidence 2456778888899999999999999877643 211 11344677888899999999873 4466667777777
Q ss_pred CChhHHHHHHHHHH
Q 036068 144 GNGDKALDMFSQML 157 (178)
Q Consensus 144 ~~~~~a~~~~~~m~ 157 (178)
|+....-.+...+-
T Consensus 181 ~~~~~~~~~~~~~~ 194 (203)
T 3gw4_A 181 EDSEAVNELMTRLN 194 (203)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhccc
Confidence 77665555555544
No 137
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.36 E-value=0.00011 Score=55.93 Aligned_cols=149 Identities=9% Similarity=-0.003 Sum_probs=82.0
Q ss_pred chhHHHHHHHHHHh----cCChhHHHHHhccCCC-CChhHHHHHHHHHhh----cCChhHHHHHHHHhHhCCCCCcHHHH
Q 036068 5 DVISWTAIVSRYIN----RGQVDIARQCFDQMPE-RDYVLWTAMIDGYLR----VNRFREALTLFQEMQTSNIMGDEFTI 75 (178)
Q Consensus 5 ~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~ 75 (178)
++..+..+-..|.. .+++++|...|++.-+ .+...+..|-..|.. .++.++|.+.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 34444555555555 6666777666665432 355555556666665 666666666666666554 33444
Q ss_pred HHHHHHhcc----ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHh----cCChhhhc---------cchhhHHHHHH
Q 036068 76 VSILTARAN----LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI----CADVEKAQ---------KDKFSWTTMIV 138 (178)
Q Consensus 76 ~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~---------~~~~~~~~li~ 138 (178)
..+-..|.. .+++++|...|+...+.| ++..+..+-..|.. .++.++|. .+...+..+-.
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 445555544 556666666666665554 23344444444544 44555554 24445555555
Q ss_pred HHHh----cCChhHHHHHHHHHHHc
Q 036068 139 GLAI----SGNGDKALDMFSQMLRA 159 (178)
Q Consensus 139 ~~~~----~~~~~~a~~~~~~m~~~ 159 (178)
.|.. .++.++|.+.|++..+.
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~ 216 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATS 216 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHC
Confidence 5554 55666666666655544
No 138
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.36 E-value=1.8e-06 Score=57.89 Aligned_cols=145 Identities=13% Similarity=-0.021 Sum_probs=75.2
Q ss_pred HHHHHHhcCChhHHHHHhccCCCC---ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCC-Cc--------------HH
Q 036068 12 IVSRYINRGQVDIARQCFDQMPER---DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM-GD--------------EF 73 (178)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~--------------~~ 73 (178)
.+......|+++.+.+.|+.-.+. ....+..+-..+.+.|++++|...|++..+..-. |+ ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 344455566677766666644322 4445666667777778888888888777654211 10 25
Q ss_pred HHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc----------c-chhhHHHHHHHHHh
Q 036068 74 TIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ----------K-DKFSWTTMIVGLAI 142 (178)
Q Consensus 74 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~-~~~~~~~li~~~~~ 142 (178)
.+..+..++.+.|++++|...++...+... .+...+..+-..|...|++++|. | +...+..+...+..
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 666777777778888888888877776643 24555555666666666666654 1 33444444455555
Q ss_pred cCChhHHH-HHHHHHH
Q 036068 143 SGNGDKAL-DMFSQML 157 (178)
Q Consensus 143 ~~~~~~a~-~~~~~m~ 157 (178)
.++.+++. ..|..|.
T Consensus 169 ~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHC----------
T ss_pred HHHHHHHHHHHHHHHh
Confidence 55554444 3444443
No 139
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.36 E-value=1.4e-05 Score=51.78 Aligned_cols=90 Identities=10% Similarity=-0.058 Sum_probs=70.6
Q ss_pred ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID 115 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 115 (178)
+...|..+-..+.+.|++++|.+.|++..+.. +-+...|..+..++.+.|++++|...++...+.... +...|..+-.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 56678888889999999999999999988765 336788889999999999999999999999887643 3555555555
Q ss_pred HHHhcCChhhhc
Q 036068 116 MYCICADVEKAQ 127 (178)
Q Consensus 116 ~~~~~~~~~~a~ 127 (178)
.|.+.|++++|.
T Consensus 88 ~~~~~g~~~~A~ 99 (164)
T 3sz7_A 88 ARFDMADYKGAK 99 (164)
T ss_dssp HHHHTTCHHHHH
T ss_pred HHHHccCHHHHH
Confidence 555555555553
No 140
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.36 E-value=1.5e-05 Score=47.47 Aligned_cols=101 Identities=12% Similarity=-0.019 Sum_probs=81.3
Q ss_pred ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID 115 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 115 (178)
+...|..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|.+.++...+.....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---------- 73 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE---------- 73 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT----------
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc----------
Confidence 45667778888999999999999999988764 3356788888899999999999999999888764320
Q ss_pred HHHhcCChhhhccchhhHHHHHHHHHhc-CChhHHHHHHHHHHHc
Q 036068 116 MYCICADVEKAQKDKFSWTTMIVGLAIS-GNGDKALDMFSQMLRA 159 (178)
Q Consensus 116 ~~~~~~~~~~a~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~ 159 (178)
.+...|..+...+.+. |++++|.+.+++..+.
T Consensus 74 ------------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 74 ------------YNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp ------------TCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred ------------chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 1234567777888889 9999999999998875
No 141
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.35 E-value=5.4e-05 Score=57.73 Aligned_cols=146 Identities=12% Similarity=0.014 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHh----cCChhHHHHHhccCCCC-ChhHHHHHHHHHhh----cCChhHHHHHHHHhHhCCCCCcHHHHHH
Q 036068 7 ISWTAIVSRYIN----RGQVDIARQCFDQMPER-DYVLWTAMIDGYLR----VNRFREALTLFQEMQTSNIMGDEFTIVS 77 (178)
Q Consensus 7 ~~~~~li~~~~~----~~~~~~a~~~~~~m~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 77 (178)
..+..|-..|.. .+++++|.+.|++..+. +...+..|-..|.. .+++++|.+.|++..+.| +...+..
T Consensus 76 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 152 (490)
T 2xm6_A 76 PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQS 152 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 344445555555 56666666666654332 44445555555554 456666666666655544 2333444
Q ss_pred HHHHhcc----ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHh----cCChhhhc---------cchhhHHHHHHHH
Q 036068 78 ILTARAN----LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCI----CADVEKAQ---------KDKFSWTTMIVGL 140 (178)
Q Consensus 78 ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~---------~~~~~~~~li~~~ 140 (178)
+-..|.. .+++++|.+.|+...+.| ++..+..+-..|.. .++.++|. .+...+..+...|
T Consensus 153 Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y 229 (490)
T 2xm6_A 153 MGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMY 229 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4444443 445555555555555543 23444444444444 44444443 2333344444444
Q ss_pred Hh----cCChhHHHHHHHHHHH
Q 036068 141 AI----SGNGDKALDMFSQMLR 158 (178)
Q Consensus 141 ~~----~~~~~~a~~~~~~m~~ 158 (178)
.. .+++++|.++|++..+
T Consensus 230 ~~g~g~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 230 YFGIGVTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHT
T ss_pred HcCCCCCCCHHHHHHHHHHHHH
Confidence 43 4445555555544443
No 142
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.35 E-value=6.2e-05 Score=53.50 Aligned_cols=119 Identities=8% Similarity=0.027 Sum_probs=91.6
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHhHhCC-CCCcH----HHHHHHHHHhccccchhhHHHHHHHHHHhCcc-cc----hHH
Q 036068 40 WTAMIDGYLRVNRFREALTLFQEMQTSN-IMGDE----FTIVSILTARANLRALDLGEWIKTYIDKNKVK-ND----IFA 109 (178)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~ 109 (178)
+...+..+...|++++|.+.+++..... ..|+. ..+..+...+...+++++|...++...+.... ++ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 3344778889999999999999987643 22332 23335666778888999999999998874322 22 336
Q ss_pred HHHHHHHHHhcCChhhhc------------------cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 110 GNALIDMYCICADVEKAQ------------------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 110 ~~~ll~~~~~~~~~~~a~------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
++.+-..|...|++++|. ....+|..+...|.+.|++++|.+.+++.++
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 899999999999999987 1234788899999999999999999998875
No 143
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.35 E-value=3e-05 Score=46.53 Aligned_cols=102 Identities=11% Similarity=-0.019 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068 37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116 (178)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 116 (178)
...+..+...+...|++++|...|++..... +.+...+..+..++.+.|++++|...++...+....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------------ 70 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD------------ 70 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc------------
Confidence 4567778888899999999999999987764 336778888888999999999999999888876432
Q ss_pred HHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 036068 117 YCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165 (178)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 165 (178)
+...+..+...+...|++++|.+.+++..+. .|+.
T Consensus 71 ------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~ 105 (118)
T 1elw_A 71 ------------WGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--EANN 105 (118)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTC
T ss_pred ------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--CCCC
Confidence 2334666777788889999999999988764 4544
No 144
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.33 E-value=2.4e-05 Score=47.88 Aligned_cols=115 Identities=6% Similarity=-0.057 Sum_probs=85.2
Q ss_pred hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068 37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116 (178)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 116 (178)
...|..+...+...|++++|...|++..... +.+...+..+..++.+.|++++|...++...+....... .+..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~---- 77 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE-DYRQ---- 77 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT-CHHH----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccch-hHHH----
Confidence 3567778888999999999999999988764 346778888889999999999999999888775432100 0000
Q ss_pred HHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHH
Q 036068 117 YCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGV 171 (178)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 171 (178)
...+|..+...+.+.|++++|.+.|++..+. .|+......+
T Consensus 78 ------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 78 ------------IAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp ------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 1345667778888999999999999998875 4565544443
No 145
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.33 E-value=7.3e-06 Score=52.10 Aligned_cols=135 Identities=10% Similarity=0.008 Sum_probs=96.3
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCC-----CC----hhHHHHHHHHHhhcCChhHHHHHHHHhHhC----CCCC-c
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMPE-----RD----YVLWTAMIDGYLRVNRFREALTLFQEMQTS----NIMG-D 71 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~ 71 (178)
..++..+...+...|++++|...+++..+ ++ ...+..+-..+...|++++|.+.+++..+. +-.+ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 34678888889999999999999987653 11 246777888888999999999999886543 1111 1
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHH
Q 036068 72 EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALD 151 (178)
Q Consensus 72 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~ 151 (178)
...+..+..++...|++++|.+.++...+......... .....+..+...+...|++++|.+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------------------~~~~~~~~la~~~~~~g~~~~A~~ 150 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI------------------GEGRACWSLGNAYTALGNHDQAMH 150 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH------------------HHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchH------------------hHHHHHHHHHHHHHHccCHHHHHH
Confidence 45677777888899999999998877664321111000 113346677788888999999999
Q ss_pred HHHHHHH
Q 036068 152 MFSQMLR 158 (178)
Q Consensus 152 ~~~~m~~ 158 (178)
.+++..+
T Consensus 151 ~~~~a~~ 157 (164)
T 3ro3_A 151 FAEKHLE 157 (164)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988765
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.32 E-value=8.1e-06 Score=54.62 Aligned_cols=120 Identities=6% Similarity=-0.006 Sum_probs=97.4
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCC---CCh----------------hHHHHHHHHHhhcCChhHHHHHHHHhHhC
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMPE---RDY----------------VLWTAMIDGYLRVNRFREALTLFQEMQTS 66 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~----------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 66 (178)
...+..+-..+.+.|++++|...|++..+ .+. ..|..+-..|.+.|++++|...+++..+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34577788899999999999999997643 232 78888889999999999999999998886
Q ss_pred CCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 67 NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 67 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
. +.+...+..+..++...|++++|...++...+.... +...+..+...+.+.++.+++.
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC--
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 4 346788888999999999999999999999887643 5677888888887777766654
No 147
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=8.1e-05 Score=46.66 Aligned_cols=103 Identities=11% Similarity=0.035 Sum_probs=81.1
Q ss_pred CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc----HHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHH
Q 036068 35 RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD----EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAG 110 (178)
Q Consensus 35 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 110 (178)
.+...+..+...+.+.|++++|.+.|++..+.. |+ ...+..+..++.+.+++++|...++...+....
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------ 97 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG------ 97 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc------
Confidence 367788888999999999999999999988764 55 678888888999999999999999988876432
Q ss_pred HHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 036068 111 NALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165 (178)
Q Consensus 111 ~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 165 (178)
+...|..+...+...|++++|.+.|++..+. .|+.
T Consensus 98 ------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~ 132 (148)
T 2dba_A 98 ------------------DVKALYRRSQALEKLGRLDQAVLDLQRCVSL--EPKN 132 (148)
T ss_dssp ------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSSC
T ss_pred ------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCc
Confidence 2234555666777788888888888888764 3543
No 148
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.30 E-value=2.5e-06 Score=52.79 Aligned_cols=94 Identities=6% Similarity=-0.069 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 84 (178)
.+..+...+.+.|++++|...|++..+ | +...|..+-..+...|++++|...|++..+.. +-+...+..+..++.+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 455677788899999999999988753 3 77788888889999999999999999987764 2356778888888999
Q ss_pred ccchhhHHHHHHHHHHhC
Q 036068 85 LRALDLGEWIKTYIDKNK 102 (178)
Q Consensus 85 ~~~~~~a~~~~~~m~~~~ 102 (178)
.|++++|...++...+..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 999999999998887654
No 149
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.28 E-value=0.00016 Score=52.07 Aligned_cols=152 Identities=6% Similarity=-0.059 Sum_probs=120.0
Q ss_pred chhHHHHHHHHH----Hhc---CChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChh--HHHHHHHHhHhCCCCCcH
Q 036068 5 DVISWTAIVSRY----INR---GQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFR--EALTLFQEMQTSNIMGDE 72 (178)
Q Consensus 5 ~~~~~~~li~~~----~~~---~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~~~~ 72 (178)
+..+|+.--..+ .+. +++++++++++++.+ +|...|+.--..+.+.|.++ +++++++++.+.... |.
T Consensus 102 ~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~ 180 (306)
T 3dra_A 102 NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NN 180 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CH
T ss_pred cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CH
Confidence 344455554444 444 789999999998864 58888888888888888888 999999999988743 77
Q ss_pred HHHHHHHHHhccccc------hhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc---------------cchh
Q 036068 73 FTIVSILTARANLRA------LDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ---------------KDKF 131 (178)
Q Consensus 73 ~~~~~ll~~~~~~~~------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~---------------~~~~ 131 (178)
..|+---..+.+.+. ++++.+.++.++...+ -+...|+-+-..+.+.|+...+. .+..
T Consensus 181 sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 259 (306)
T 3dra_A 181 SAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSF 259 (306)
T ss_dssp HHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHH
T ss_pred HHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHH
Confidence 777766666666666 8889999999888875 47889999988888888754433 2567
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 132 SWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 132 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
.+..+...+.+.|+.++|.++++.+.+
T Consensus 260 al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 260 ALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 888899999999999999999999886
No 150
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.28 E-value=6.4e-05 Score=55.01 Aligned_cols=151 Identities=9% Similarity=-0.027 Sum_probs=104.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCC----------C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCC----CCcH
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPE----------R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNI----MGDE 72 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~~~~ 72 (178)
++..+...+...|++++|.+.+++..+ + ....+..+-..+...|++++|...+++.....- ....
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 356677788889999998888876542 1 223556677788899999999999988755321 1123
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHhCcccc-hHHHH-----HHHHHHHhcCChhhhc----------cc-----hh
Q 036068 73 FTIVSILTARANLRALDLGEWIKTYIDKNKVKND-IFAGN-----ALIDMYCICADVEKAQ----------KD-----KF 131 (178)
Q Consensus 73 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~-----~ll~~~~~~~~~~~a~----------~~-----~~ 131 (178)
.++..+...+...|++++|...++........++ ...+. .....+...|+.++|. +. ..
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 5677788888899999999999988765422211 11122 2334477889988876 11 12
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 132 SWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 132 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
.+..+...+...|++++|.+.+++..+
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456677888889999999999988765
No 151
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.26 E-value=5.5e-05 Score=60.30 Aligned_cols=168 Identities=7% Similarity=0.035 Sum_probs=109.8
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC-------------CC------------hhHHHHHHHHHhhcCChhHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE-------------RD------------YVLWTAMIDGYLRVNRFREALT 58 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-------------~~------------~~~~~~li~~~~~~~~~~~a~~ 58 (178)
++...|-..+...-+.|+++.|.++|++..+ |+ ...|...+....+.|+.+.|.+
T Consensus 376 ~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~ 455 (679)
T 4e6h_A 376 NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRK 455 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHH
Confidence 3455566677777788888888888887653 21 2356667777777778888888
Q ss_pred HHHHhHhC-C-CCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc---------
Q 036068 59 LFQEMQTS-N-IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------- 127 (178)
Q Consensus 59 ~~~~m~~~-~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--------- 127 (178)
+|.+..+. + ..+......+.+.-.+ .++.+.|..+|+...+. .+.++..|...+......|+.+.|.
T Consensus 456 vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 456 IFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 88887665 2 1222223223333222 34578888888877776 3345666777777777777777665
Q ss_pred -c----chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhh
Q 036068 128 -K----DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSAC 175 (178)
Q Consensus 128 -~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~ 175 (178)
+ ....|...+.--.+.|+.+.+..+.+++.+. .|+......+++=|
T Consensus 534 ~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 534 ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 2 3456777777777888888888888888875 46666655555433
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.24 E-value=6.6e-06 Score=51.28 Aligned_cols=105 Identities=11% Similarity=0.059 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCC--CCCc----HHHHH
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN--IMGD----EFTIV 76 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~----~~~~~ 76 (178)
...+..+-..+.+.|++++|++.|++..+ .+...|..+-.+|.+.|++++|++.+++..+.. ..++ ..+|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 34677889999999999999999998653 478889999999999999999999999976532 1111 24677
Q ss_pred HHHHHhccccchhhHHHHHHHHHHhCcccchHHHHH
Q 036068 77 SILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNA 112 (178)
Q Consensus 77 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 112 (178)
.+-.++...|++++|.+.|+...+.. |++.+...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~--~~~~~~~~ 121 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEF--RDPELVKK 121 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--CCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC--cCHHHHHH
Confidence 77888899999999999999887754 45554443
No 153
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.21 E-value=1.9e-05 Score=51.71 Aligned_cols=100 Identities=6% Similarity=0.092 Sum_probs=84.9
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHH-HhhcCCh--hHHHHHHHHhHhCCCCCcHHHHHH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDG-YLRVNRF--REALTLFQEMQTSNIMGDEFTIVS 77 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~-~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~ 77 (178)
.+...|..+...+...|++++|...|++..+ .+...+..+... +...|++ ++|...|++..+.. +-+...+..
T Consensus 42 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 120 (177)
T 2e2e_A 42 QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALML 120 (177)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 4667899999999999999999999998763 367777778888 7789998 99999999998875 335678888
Q ss_pred HHHHhccccchhhHHHHHHHHHHhCcc
Q 036068 78 ILTARANLRALDLGEWIKTYIDKNKVK 104 (178)
Q Consensus 78 ll~~~~~~~~~~~a~~~~~~m~~~~~~ 104 (178)
+..++.+.|++++|...++...+....
T Consensus 121 la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 121 LASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 899999999999999999999887543
No 154
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.19 E-value=2.3e-05 Score=59.88 Aligned_cols=117 Identities=14% Similarity=0.011 Sum_probs=92.2
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccc
Q 036068 9 WTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL 85 (178)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 85 (178)
|..+...+.+.|++++|.+.|++..+ .+...|..+-.+|.+.|++++|.+.+++..+.. +-+...+..+-.++.+.
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 34445566789999999999997653 368889999999999999999999999998875 33577888899999999
Q ss_pred cchhhHHHHHHHHHHhCcccchHHHHHHHHH--HHhcCChhhhc
Q 036068 86 RALDLGEWIKTYIDKNKVKNDIFAGNALIDM--YCICADVEKAQ 127 (178)
Q Consensus 86 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~ 127 (178)
|++++|.+.++...+.... +...+..+-.+ +.+.|++++|.
T Consensus 88 g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~ 130 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAI 130 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998887643 34455555444 77777777775
No 155
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.19 E-value=0.00015 Score=53.06 Aligned_cols=151 Identities=11% Similarity=0.011 Sum_probs=109.2
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCC----CCChh----HHHHHHHHHhhcCChhHHHHHHHHhHhC----CCC-CcHHHH
Q 036068 9 WTAIVSRYINRGQVDIARQCFDQMP----ERDYV----LWTAMIDGYLRVNRFREALTLFQEMQTS----NIM-GDEFTI 75 (178)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~ 75 (178)
+......+...|++++|...+++.. ..+.. .++.+-..+...|++++|.+.+++.... |.. ....++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444556778999999999987642 22222 4566667888899999999999987542 211 012345
Q ss_pred HHHHHHhccccchhhHHHHHHHHHHhC----cc--c-chHHHHHHHHHHHhcCChhhhc----------c------chhh
Q 036068 76 VSILTARANLRALDLGEWIKTYIDKNK----VK--N-DIFAGNALIDMYCICADVEKAQ----------K------DKFS 132 (178)
Q Consensus 76 ~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~--~-~~~~~~~ll~~~~~~~~~~~a~----------~------~~~~ 132 (178)
..+-..+...|++++|...++...+.. .. | ....+..+-..+...|++++|. + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 667778889999999999998776532 21 2 2445667778899999999987 1 1245
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 133 WTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 133 ~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
+..+...+...|++++|...+++..+.
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~ 203 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENL 203 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777888899999999999999998764
No 156
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.19 E-value=0.00014 Score=51.64 Aligned_cols=133 Identities=12% Similarity=0.036 Sum_probs=96.6
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCC--CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc--HHHHHHHHHHhcc
Q 036068 9 WTAIVSRYINRGQVDIARQCFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD--EFTIVSILTARAN 84 (178)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~ 84 (178)
+-.....+...|++++|.++|+.+.. |+....-.+-..+.+.+++++|...|+...... .|. ...+..+-.++.+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence 34567788899999999999999874 433344455568889999999999998654432 121 3467778888999
Q ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 036068 85 LRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 164 (178)
Q Consensus 85 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 164 (178)
.|++++|...|++.......|... .......-.++.+.|+.++|..+|+++... .|+
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~---------------------~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~ 240 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACA---------------------RAIAWYLAMARRSQGNESAAVALLEWLQTT--HPE 240 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTH---------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCC
T ss_pred CCCHHHHHHHHHHHhcCCCCcccc---------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence 999999999999887543324321 112344556677889999999999999875 466
Q ss_pred h
Q 036068 165 E 165 (178)
Q Consensus 165 ~ 165 (178)
.
T Consensus 241 ~ 241 (282)
T 4f3v_A 241 P 241 (282)
T ss_dssp H
T ss_pred H
Confidence 3
No 157
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.17 E-value=6.2e-06 Score=50.45 Aligned_cols=85 Identities=8% Similarity=-0.006 Sum_probs=47.1
Q ss_pred cCChhHHHHHHHHhHhCC--CCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 50 VNRFREALTLFQEMQTSN--IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 50 ~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
.|++++|...|++..+.+ -+-+...+..+..++.+.|++++|...++...+..+..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------------------- 60 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH---------------------- 60 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----------------------
Confidence 456667777777766643 12234556666666777777777777777666654321
Q ss_pred cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 128 KDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 128 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
...+..+...+.+.|++++|.+.+++..+
T Consensus 61 --~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 61 --QALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22334445555555666666666665554
No 158
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.16 E-value=2.1e-05 Score=48.46 Aligned_cols=93 Identities=11% Similarity=0.029 Sum_probs=74.8
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCC--C-Ch---hHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc----HHHHHHH
Q 036068 9 WTAIVSRYINRGQVDIARQCFDQMPE--R-DY---VLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD----EFTIVSI 78 (178)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l 78 (178)
+..+...+.+.|++++|.+.|++..+ | +. ..+..+-..+.+.|++++|...|++..+.. |+ ...+..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHH
Confidence 34467788899999999999998753 3 33 467778888999999999999999987764 33 5667778
Q ss_pred HHHhccccchhhHHHHHHHHHHhCc
Q 036068 79 LTARANLRALDLGEWIKTYIDKNKV 103 (178)
Q Consensus 79 l~~~~~~~~~~~a~~~~~~m~~~~~ 103 (178)
..++.+.|++++|...++.+.+..+
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 8889999999999999999888753
No 159
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=5.2e-05 Score=56.48 Aligned_cols=146 Identities=9% Similarity=-0.091 Sum_probs=108.1
Q ss_pred HHHHHhcCChhHHHHHhccCCCC--------------------ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC-CCCCc
Q 036068 13 VSRYINRGQVDIARQCFDQMPER--------------------DYVLWTAMIDGYLRVNRFREALTLFQEMQTS-NIMGD 71 (178)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~--------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~ 71 (178)
.+.+.+.|++++|.+.|.+..+. ....+..|...|.+.|++++|.+.+.+.... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 56678899999999999876421 1124777899999999999999999987542 11122
Q ss_pred H----HHHHHHHHHhccccchhhHHHHHHHHHHh----Cccc-chHHHHHHHHHHHhcCChhhhc---------------
Q 036068 72 E----FTIVSILTARANLRALDLGEWIKTYIDKN----KVKN-DIFAGNALIDMYCICADVEKAQ--------------- 127 (178)
Q Consensus 72 ~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~--------------- 127 (178)
. .+.+.+-..+...|+++++.+++...... +..+ -..++..+...|...|++++|.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 22333334456778899999998776542 2222 2567788899999999999997
Q ss_pred --cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 128 --KDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 128 --~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
.....+..++..|...|++++|..++++.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 1355788899999999999999999998875
No 160
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.13 E-value=3.6e-05 Score=47.46 Aligned_cols=96 Identities=16% Similarity=0.000 Sum_probs=75.0
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH
Q 036068 39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC 118 (178)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 118 (178)
.+-.+-..+.+.|++++|...|++..+.. +-+...|..+-.++.+.|++++|...++...+..+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-------------- 83 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-------------- 83 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------
Confidence 45556677888999999999999988764 336778888888899999999999999988887543
Q ss_pred hcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 119 ICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 119 ~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
+...+..+...+.+.|++++|...|++.++.
T Consensus 84 ----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 84 ----------DIAVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2334566777778888888999999888753
No 161
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.12 E-value=2.7e-05 Score=50.27 Aligned_cols=97 Identities=18% Similarity=0.137 Sum_probs=79.2
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCCC---------------------ChhHHHHHHHHHhhcCChhHHHHHHHHhH
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMPER---------------------DYVLWTAMIDGYLRVNRFREALTLFQEMQ 64 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 64 (178)
+..+...-..+.+.|++++|...|.+..+- +...|..+-.+|.+.|++++|...+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445777888899999999999998875421 33577888889999999999999999988
Q ss_pred hCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCc
Q 036068 65 TSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV 103 (178)
Q Consensus 65 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 103 (178)
+.. +.+...|..+-.++...|++++|...++...+..+
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 765 34577888899999999999999999998888754
No 162
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.11 E-value=0.00023 Score=50.48 Aligned_cols=122 Identities=7% Similarity=-0.003 Sum_probs=92.6
Q ss_pred hHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc-H----HHHHHHHHHhccccchhhHHHHHHHHHHhCc---ccc--h
Q 036068 38 VLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD-E----FTIVSILTARANLRALDLGEWIKTYIDKNKV---KND--I 107 (178)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~~~--~ 107 (178)
..+...+..+...|++++|.+.+++..+...... . ..+..+...+...|++++|...++...+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455677888999999999999988776532211 1 2234455667888999999999988775321 111 4
Q ss_pred HHHHHHHHHHHhcCChhhhc-------------cc-----hhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 108 FAGNALIDMYCICADVEKAQ-------------KD-----KFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 108 ~~~~~ll~~~~~~~~~~~a~-------------~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
.+++.+-..|...|++++|. ++ ..+++.+...|.+.|++++|.+.+++.++.
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 58889999999999999987 22 258889999999999999999999998753
No 163
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.11 E-value=2.7e-05 Score=57.61 Aligned_cols=118 Identities=8% Similarity=-0.004 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHhcCChhHHHHHhccCCC-------------------CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCC
Q 036068 7 ISWTAIVSRYINRGQVDIARQCFDQMPE-------------------RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN 67 (178)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~-------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 67 (178)
..|..+-..+.+.|++++|.+.|++..+ .+...|..+-..|.+.|++++|.+.+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 3477788889999999999999987653 245678888889999999999999999988764
Q ss_pred CCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhh
Q 036068 68 IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126 (178)
Q Consensus 68 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 126 (178)
+-+...+..+-.++.+.|++++|...++...+.... +...+..+-..+.+.++.+++
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 235778888888999999999999999988887533 455666666666655555543
No 164
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.09 E-value=2e-05 Score=59.91 Aligned_cols=119 Identities=8% Similarity=0.015 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCC--C-C---------------hhHHHHHHHHHhhcCChhHHHHHHHHhHhCC
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMPE--R-D---------------YVLWTAMIDGYLRVNRFREALTLFQEMQTSN 67 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~-~---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 67 (178)
...|..+-..+.+.|++++|...|++..+ | + ...|..+-.+|.+.|++++|...+++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34566777788888888888888886643 2 2 4677777778888888888888888877764
Q ss_pred CCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhh
Q 036068 68 IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126 (178)
Q Consensus 68 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 126 (178)
+-+...|..+-.++.+.|++++|...|+...+..+. +...+..+-..+.+.++.+++
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 335677777778888888888888888877766432 345566666666666666554
No 165
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.09 E-value=0.00061 Score=46.05 Aligned_cols=118 Identities=11% Similarity=0.016 Sum_probs=97.4
Q ss_pred CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcccc----chhhHHHHHHHHHHhCcccchHHH
Q 036068 35 RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLR----ALDLGEWIKTYIDKNKVKNDIFAG 110 (178)
Q Consensus 35 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~m~~~~~~~~~~~~ 110 (178)
.+...+..|-..|...+++++|.+.|++..+.| +...+..+-..|.. + ++++|.++|+...+.| ++..+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 477888888889999999999999999998876 55667777777877 6 8999999999998765 45566
Q ss_pred HHHHHHHHh----cCChhhhc---------cc----hhhHHHHHHHHHh----cCChhHHHHHHHHHHHc
Q 036068 111 NALIDMYCI----CADVEKAQ---------KD----KFSWTTMIVGLAI----SGNGDKALDMFSQMLRA 159 (178)
Q Consensus 111 ~~ll~~~~~----~~~~~~a~---------~~----~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~ 159 (178)
..|-..|.. .+++++|. .+ ...+..|-..|.. .+++++|+..|++..+.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 677677766 77888877 23 6888889899988 88999999999999886
No 166
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.08 E-value=0.00025 Score=43.47 Aligned_cols=101 Identities=12% Similarity=0.028 Sum_probs=73.0
Q ss_pred HHHHHHhhcCChhHHHHHHHHhHhCCCCCcH---HHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH
Q 036068 42 AMIDGYLRVNRFREALTLFQEMQTSNIMGDE---FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYC 118 (178)
Q Consensus 42 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 118 (178)
.+-..+.+.|++++|.+.|++..+..- .+. ..+..+..++.+.|++++|...++...+..+....
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~----------- 74 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK----------- 74 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT-----------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc-----------
Confidence 455677889999999999999887542 122 47777888899999999999999998887543210
Q ss_pred hcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh
Q 036068 119 ICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEV 166 (178)
Q Consensus 119 ~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 166 (178)
....+..+...+.+.|++++|...|++..+. .|+..
T Consensus 75 ----------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~ 110 (129)
T 2xev_A 75 ----------AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ--YPGSD 110 (129)
T ss_dssp ----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTSH
T ss_pred ----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCh
Confidence 0223445566677788888888888888764 35543
No 167
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.06 E-value=0.00038 Score=47.43 Aligned_cols=127 Identities=12% Similarity=0.025 Sum_probs=89.7
Q ss_pred hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCC-C-cHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccch--HHHHH
Q 036068 37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM-G-DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDI--FAGNA 112 (178)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ 112 (178)
...+-.+...+.+.|++++|...|+++.+..-. | ....+..+..++.+.|++++|...++.+.+..+.... ..+-.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555667788999999999999999875321 1 2357778889999999999999999999987654322 23443
Q ss_pred HHHHHHh------------------cCChhhhc----------cc-hhhH-----------------HHHHHHHHhcCCh
Q 036068 113 LIDMYCI------------------CADVEKAQ----------KD-KFSW-----------------TTMIVGLAISGNG 146 (178)
Q Consensus 113 ll~~~~~------------------~~~~~~a~----------~~-~~~~-----------------~~li~~~~~~~~~ 146 (178)
+-..+.+ .|+.++|. |+ ...+ -.+...+.+.|++
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~ 163 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW 163 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 4444443 45677775 33 2222 2345677889999
Q ss_pred hHHHHHHHHHHHcCCCCCh
Q 036068 147 DKALDMFSQMLRASIKPDE 165 (178)
Q Consensus 147 ~~a~~~~~~m~~~g~~p~~ 165 (178)
++|...|+++++. .|+.
T Consensus 164 ~~A~~~~~~~l~~--~p~~ 180 (225)
T 2yhc_A 164 VAVVNRVEGMLRD--YPDT 180 (225)
T ss_dssp HHHHHHHHHHHHH--STTS
T ss_pred HHHHHHHHHHHHH--CcCC
Confidence 9999999999975 4554
No 168
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.00 E-value=3.3e-05 Score=48.95 Aligned_cols=90 Identities=12% Similarity=0.039 Sum_probs=51.6
Q ss_pred hHHHHHHHHHhhcCChhHHHHHHHHhHhCCC---CC--cHHHHHHHHHHhccccchhhHHHHHHHHHHhCc----cc-ch
Q 036068 38 VLWTAMIDGYLRVNRFREALTLFQEMQTSNI---MG--DEFTIVSILTARANLRALDLGEWIKTYIDKNKV----KN-DI 107 (178)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~----~~-~~ 107 (178)
.++..+-..+...|++++|...+++..+..- .+ ...++..+...+...|++++|...++...+... .+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 3555666666677777777777766543210 00 113556666666777777777777765543211 11 13
Q ss_pred HHHHHHHHHHHhcCChhhhc
Q 036068 108 FAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 108 ~~~~~ll~~~~~~~~~~~a~ 127 (178)
..+..+-..+...|++++|.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~ 109 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAI 109 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHH
Confidence 45556666667777777665
No 169
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.00 E-value=8.8e-05 Score=53.17 Aligned_cols=119 Identities=8% Similarity=-0.078 Sum_probs=92.8
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHhHhC----CCCC-cHHHHHHHHHHhccccchhhHHHHHHHHHHh----Ccc-cchH
Q 036068 39 LWTAMIDGYLRVNRFREALTLFQEMQTS----NIMG-DEFTIVSILTARANLRALDLGEWIKTYIDKN----KVK-NDIF 108 (178)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~ 108 (178)
.|+.....|...|++++|...|.+..+. +-.+ -..+|+.+..+|.+.|++++|...++...+. |-. ....
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5666778888999999999999886543 2111 1457888889999999999999999876653 211 1246
Q ss_pred HHHHHHHHHHhcCChhhhc----------c-------chhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 109 AGNALIDMYCICADVEKAQ----------K-------DKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 109 ~~~~ll~~~~~~~~~~~a~----------~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
+++.+-..|.. |++++|. + ...+++.+...+.+.|++++|.+.|++..+
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77788888888 9999987 1 146788889999999999999999999886
No 170
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.00 E-value=5.1e-05 Score=58.20 Aligned_cols=112 Identities=10% Similarity=-0.108 Sum_probs=61.4
Q ss_pred hhcCChhHHHHHHHHhHhC---CCCC----cHHHHHHHHHHhccccchhhHHHHHHHHHHh-----Cc-cc-chHHHHHH
Q 036068 48 LRVNRFREALTLFQEMQTS---NIMG----DEFTIVSILTARANLRALDLGEWIKTYIDKN-----KV-KN-DIFAGNAL 113 (178)
Q Consensus 48 ~~~~~~~~a~~~~~~m~~~---~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~~-~~-~~~~~~~l 113 (178)
...|++++|..++++.++. -+.| ...+++.+..+|...|++++|+.++++..+. |. .| ...+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3455555555555554321 1111 1345555555555556665555555544321 11 11 23345555
Q ss_pred HHHHHhcCChhhhc------------------c-chhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 114 IDMYCICADVEKAQ------------------K-DKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 114 l~~~~~~~~~~~a~------------------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
-..|...|++++|. | ...+.+.+-..+...+.+++|..+|.++++.
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554 1 2234456667778889999999999999873
No 171
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.00 E-value=6.6e-05 Score=50.67 Aligned_cols=113 Identities=10% Similarity=-0.032 Sum_probs=80.7
Q ss_pred HHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccc-
Q 036068 12 IVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRA- 87 (178)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~- 87 (178)
+...+.+.|++++|...|++..+ | +...|..+-..+...|++++|...|++..+.. +-+...+..+-.++...++
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHH
Confidence 88999999999999999998753 3 78889999999999999999999999998875 3356777777777765543
Q ss_pred -hhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 88 -LDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 88 -~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
.+.+...++.... ..|....+...-.++...|++++|.
T Consensus 139 ~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~ 177 (208)
T 3urz_A 139 EKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKAR 177 (208)
T ss_dssp HHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHH
Confidence 3444555544432 2232333334444566678888876
No 172
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.99 E-value=0.00018 Score=46.30 Aligned_cols=99 Identities=11% Similarity=0.019 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHhhcCChhHHHHHHHHhHhC--------C---------CCCcHHHHHHHHHHhccccchhhHHHHHHHHH
Q 036068 37 YVLWTAMIDGYLRVNRFREALTLFQEMQTS--------N---------IMGDEFTIVSILTARANLRALDLGEWIKTYID 99 (178)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 99 (178)
...+...-..+.+.|++++|...|.+..+. . -+.+...|..+..++.+.|++++|...++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445677778889999999999999997664 0 11234677888888899999999999998888
Q ss_pred HhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 100 KNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 100 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
+..+. +.. .|..+..++...|++++|...|++.++.
T Consensus 91 ~~~p~-~~~-----------------------a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREET-NEK-----------------------ALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTT-CHH-----------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCc-chH-----------------------HHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 76532 233 3455555566666666666666666553
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.98 E-value=2e-05 Score=60.27 Aligned_cols=108 Identities=9% Similarity=-0.046 Sum_probs=85.4
Q ss_pred HHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChh
Q 036068 45 DGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124 (178)
Q Consensus 45 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 124 (178)
..+.+.|++++|.+.|++..+.. +-+...+..+..++.+.|++++|.+.++...+... .+...+..+-..|.+.|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence 34567899999999999988764 33578899999999999999999999999998764 35788889999999999999
Q ss_pred hhc----------c-chhhHHHHHHH--HHhcCChhHHHHHHH
Q 036068 125 KAQ----------K-DKFSWTTMIVG--LAISGNGDKALDMFS 154 (178)
Q Consensus 125 ~a~----------~-~~~~~~~li~~--~~~~~~~~~a~~~~~ 154 (178)
+|. | +...+..+..+ +.+.|++++|.++++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 997 2 45556666555 788899999999988
No 174
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.97 E-value=1.9e-05 Score=48.17 Aligned_cols=99 Identities=12% Similarity=0.039 Sum_probs=72.1
Q ss_pred hcCChhHHHHHhccCCC-----C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhH
Q 036068 18 NRGQVDIARQCFDQMPE-----R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLG 91 (178)
Q Consensus 18 ~~~~~~~a~~~~~~m~~-----~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 91 (178)
..|++++|...|++..+ | +...|..+-..|.+.|++++|...|++..+.. +-+...+..+..++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 46888889998887653 2 45678888899999999999999999998875 33577888899999999999999
Q ss_pred HHHHHHHHHhCc-ccchHHHHHHHHHH
Q 036068 92 EWIKTYIDKNKV-KNDIFAGNALIDMY 117 (178)
Q Consensus 92 ~~~~~~m~~~~~-~~~~~~~~~ll~~~ 117 (178)
...++...+... .++...+...+..|
T Consensus 81 ~~~~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 999998877643 23333344444433
No 175
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.94 E-value=0.00025 Score=52.81 Aligned_cols=151 Identities=9% Similarity=-0.032 Sum_probs=111.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCC-----CC---h-hHHHHHHHHHhhcCChhHHHHHHHHhHh----CCCCC-cHH
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPE-----RD---Y-VLWTAMIDGYLRVNRFREALTLFQEMQT----SNIMG-DEF 73 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~---~-~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~-~~~ 73 (178)
.+..+...|.+.|++++|.+.+....+ ++ . ...+.+-..+...|+.++|.+++++... .+..+ -..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 467889999999999999999988753 11 1 1233333344466889999999888643 23222 356
Q ss_pred HHHHHHHHhccccchhhHHHHHHHHHHhC--c---ccchHHHHHHHHHHHhcCChhhhc-------------cc-----h
Q 036068 74 TIVSILTARANLRALDLGEWIKTYIDKNK--V---KNDIFAGNALIDMYCICADVEKAQ-------------KD-----K 130 (178)
Q Consensus 74 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~---~~~~~~~~~ll~~~~~~~~~~~a~-------------~~-----~ 130 (178)
++..+...+...|++++|..+++.+...- . .....++..+...|...|++++|. ++ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 78889999999999999999998876431 1 123567888899999999999987 11 2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 131 FSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 131 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
..+..+...+...|++++|...|.+..+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4456666777888999999998888764
No 176
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.91 E-value=0.00025 Score=50.24 Aligned_cols=90 Identities=8% Similarity=-0.148 Sum_probs=72.8
Q ss_pred ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID 115 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 115 (178)
+...+..+-..+.+.|++++|...|++..+.. +-+...|..+..++.+.|++++|...++...+... .+...+..+-.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 45567778888999999999999999988764 23678888899999999999999999999887653 34666777777
Q ss_pred HHHhcCChhhhc
Q 036068 116 MYCICADVEKAQ 127 (178)
Q Consensus 116 ~~~~~~~~~~a~ 127 (178)
.|...|++++|.
T Consensus 81 ~~~~~g~~~~A~ 92 (281)
T 2c2l_A 81 CQLEMESYDEAI 92 (281)
T ss_dssp HHHHTTCHHHHH
T ss_pred HHHHcCCHHHHH
Confidence 777777777775
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.90 E-value=0.00013 Score=55.36 Aligned_cols=121 Identities=7% Similarity=0.001 Sum_probs=96.0
Q ss_pred ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc--------------HHHHHHHHHHhccccchhhHHHHHHHHHHh
Q 036068 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD--------------EFTIVSILTARANLRALDLGEWIKTYIDKN 101 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 101 (178)
....|..+-..+.+.|++++|...|++..+..-... ...|..+-.++.+.+++++|...++...+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 455788888899999999999999999877531111 578889999999999999999999999987
Q ss_pred CcccchHHHHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHH-HHHHHHH
Q 036068 102 KVKNDIFAGNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKAL-DMFSQML 157 (178)
Q Consensus 102 ~~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~-~~~~~m~ 157 (178)
... +...|..+-.+|.+.|++++|. .+...+..+...+.+.++.+++. .++++|.
T Consensus 347 ~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 347 DSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 643 5788888899999999999987 35677888888888888888766 3555554
No 178
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.83 E-value=0.00063 Score=54.28 Aligned_cols=155 Identities=9% Similarity=-0.050 Sum_probs=113.2
Q ss_pred chhHHHHHHHHHHhcCChhHHH-HHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCC---------CCC-
Q 036068 5 DVISWTAIVSRYINRGQVDIAR-QCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSN---------IMG- 70 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---------~~~- 70 (178)
+...|-..+..+.+.|+.++|. ++|++... | +...|-..+....+.|++++|.++|++..... -.|
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 4556777777788889998896 88887653 3 55567778888889999999999999987631 013
Q ss_pred -----------cHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhc-CChhhhc-----------
Q 036068 71 -----------DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC-ADVEKAQ----------- 127 (178)
Q Consensus 71 -----------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~----------- 127 (178)
....|...++...+.+..+.|..+|....+.-...+..+|-.....-.+. ++.+.|.
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p 501 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA 501 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC
Confidence 23468888888888999999999999998762222344444333333344 3466654
Q ss_pred cchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 128 KDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 128 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
.+...|...+.-....|+.+.|..+|++....
T Consensus 502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 35666778888888899999999999998875
No 179
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.83 E-value=0.0022 Score=48.58 Aligned_cols=145 Identities=12% Similarity=-0.016 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcC---ChhHHHHHhccCCC---CChhHHHHHHHHHhhc----CChhHHHHHHHHhHhCCCCCcHHHHHH
Q 036068 8 SWTAIVSRYINRG---QVDIARQCFDQMPE---RDYVLWTAMIDGYLRV----NRFREALTLFQEMQTSNIMGDEFTIVS 77 (178)
Q Consensus 8 ~~~~li~~~~~~~---~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~~~~~ 77 (178)
.+..+-..+.+.| +.++|.+.|++.-+ ++...+..|-..|... ++.++|.+.|++.. .| +...+..
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~ 253 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVS 253 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHH
Confidence 4444444444455 44555555544321 2222223333344332 35555555555544 22 2222222
Q ss_pred HHHH-h--ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcC-----Chhhhc--------cchhhHHHHHHHHH
Q 036068 78 ILTA-R--ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA-----DVEKAQ--------KDKFSWTTMIVGLA 141 (178)
Q Consensus 78 ll~~-~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-----~~~~a~--------~~~~~~~~li~~~~ 141 (178)
+-.. + ...+++++|.+.|+...+.| ++..+..+-..|. .| +.++|. .+...+..|-..|.
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~ 329 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYLGQIYR 329 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3222 2 33455555555555555544 2333333333333 23 444433 23344444444444
Q ss_pred h----cCChhHHHHHHHHHHHcC
Q 036068 142 I----SGNGDKALDMFSQMLRAS 160 (178)
Q Consensus 142 ~----~~~~~~a~~~~~~m~~~g 160 (178)
. ..+.++|...|++..+.|
T Consensus 330 ~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 330 RGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp TTTTSSCCHHHHHHHHHHHHTTT
T ss_pred CCCCCCcCHHHHHHHHHHHHhhC
Confidence 3 226666666666666554
No 180
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.82 E-value=9.3e-05 Score=56.79 Aligned_cols=113 Identities=6% Similarity=-0.073 Sum_probs=83.3
Q ss_pred HHHhcCChhHHHHHhccCCC----------C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHh-----CCC-CC-cHHHHH
Q 036068 15 RYINRGQVDIARQCFDQMPE----------R-DYVLWTAMIDGYLRVNRFREALTLFQEMQT-----SNI-MG-DEFTIV 76 (178)
Q Consensus 15 ~~~~~~~~~~a~~~~~~m~~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~-~~-~~~~~~ 76 (178)
.+-..|++++|..++++..+ | ...+++.|...|...|++++|..++++.++ .|- .| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45679999999988876532 2 456899999999999999999999998654 121 22 346889
Q ss_pred HHHHHhccccchhhHHHHHHHHHH-----hCcc-c-chHHHHHHHHHHHhcCChhhhc
Q 036068 77 SILTARANLRALDLGEWIKTYIDK-----NKVK-N-DIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 77 ~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~-~-~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
.|-..|...|++++|+.++++..+ .|.. | ...+.+.+-..+...+.+++|.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae 455 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE 455 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987653 2432 2 2344556666677777777653
No 181
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.81 E-value=0.00078 Score=47.86 Aligned_cols=105 Identities=11% Similarity=-0.095 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCCC-C----hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc--HHHHHHHHH
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPER-D----YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD--EFTIVSILT 80 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~ 80 (178)
....+-..+.+.+++++|+..|+...+. + ...+..+-.++.+.|++++|++.|++.......|. .......-.
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~gl 216 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAM 216 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHH
Confidence 5555667899999999999999976653 2 23667778899999999999999999875443254 335666777
Q ss_pred HhccccchhhHHHHHHHHHHhCcccchHHHHHHH
Q 036068 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALI 114 (178)
Q Consensus 81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 114 (178)
++.+.|+.++|..+|+.+....+. ...+..|.
T Consensus 217 aL~~lGr~deA~~~l~~a~a~~P~--~~~~~aL~ 248 (282)
T 4f3v_A 217 ARRSQGNESAAVALLEWLQTTHPE--PKVAAALK 248 (282)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSCC--HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCc--HHHHHHHh
Confidence 889999999999999999998654 55555553
No 182
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.80 E-value=0.00049 Score=39.25 Aligned_cols=81 Identities=11% Similarity=0.019 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068 37 YVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116 (178)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 116 (178)
...+..+-..+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|...++...+..+. +...+..+-..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 3455666667777777777777777766553 224566667777777777777777777777665432 34445544444
Q ss_pred HHh
Q 036068 117 YCI 119 (178)
Q Consensus 117 ~~~ 119 (178)
+.+
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 433
No 183
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00026 Score=42.10 Aligned_cols=63 Identities=10% Similarity=0.006 Sum_probs=34.7
Q ss_pred hHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHh
Q 036068 38 VLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN 101 (178)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 101 (178)
..|..+-..+.+.|++++|.+.|++..+.. +.+...+..+-.++.+.|++++|...++...+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344455555555666666666666555443 224455555555566666666666666555544
No 184
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.75 E-value=0.00021 Score=52.05 Aligned_cols=119 Identities=12% Similarity=0.046 Sum_probs=56.7
Q ss_pred hHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHH------------------HHHHHHHHhccccchhhHHHHHHHHH
Q 036068 38 VLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEF------------------TIVSILTARANLRALDLGEWIKTYID 99 (178)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~------------------~~~~ll~~~~~~~~~~~a~~~~~~m~ 99 (178)
..+..+-..+.+.|++++|...|++..+.. |+.. .|..+-.++.+.+++++|...++...
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555566666777777777777655432 3322 56667777777777777777777777
Q ss_pred HhCcccchHHHHHHHHHHHhcCChhhhc----------c-chhhHHHHHHH-HHhcCChhHHHHHHHHHHHc
Q 036068 100 KNKVKNDIFAGNALIDMYCICADVEKAQ----------K-DKFSWTTMIVG-LAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 100 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~-~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~ 159 (178)
+... .+...|..+-.+|...|++++|. | +...+..+... ....+..+++..+|++|...
T Consensus 258 ~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 258 TEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 6543 24566667777777777777766 2 33344444433 23456677888888888753
No 185
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.73 E-value=0.0049 Score=45.16 Aligned_cols=153 Identities=10% Similarity=-0.039 Sum_probs=109.6
Q ss_pred cchhHHHHHHHHHHhc-C-ChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChh--------HHHHHHHHhHhCCCCC
Q 036068 4 KDVISWTAIVSRYINR-G-QVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFR--------EALTLFQEMQTSNIMG 70 (178)
Q Consensus 4 p~~~~~~~li~~~~~~-~-~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~~ 70 (178)
.+..+|+.--..+.+. + ++++++++++++.+ +|...|+.--..+.+.|.++ ++++.++++.+... -
T Consensus 121 Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~ 199 (349)
T 3q7a_A 121 KSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-R 199 (349)
T ss_dssp CCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-T
T ss_pred CcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-C
Confidence 4455676666666665 6 77888888888765 36666666555555555555 88888888888764 3
Q ss_pred cHHHHHHHHHHhccccc-------hhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhh------------------
Q 036068 71 DEFTIVSILTARANLRA-------LDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK------------------ 125 (178)
Q Consensus 71 ~~~~~~~ll~~~~~~~~-------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~------------------ 125 (178)
|...|+---..+.+.+. ++++.+.++..+...+ -+...|+-+-..+.+.|....
T Consensus 200 N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (349)
T 3q7a_A 200 NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDI 278 (349)
T ss_dssp CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-------
T ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCCcccccccccccccccccccc
Confidence 77778777777777665 5778888888877764 368888887777777665410
Q ss_pred --h-----------------ccchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 126 --A-----------------QKDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 126 --a-----------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
. .+....+..|.+.|...|+.++|.++++.+.+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 279 ETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp -------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 0 14566778888999999999999999999865
No 186
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.00014 Score=43.24 Aligned_cols=90 Identities=10% Similarity=0.127 Sum_probs=70.0
Q ss_pred cchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc-------HH
Q 036068 4 KDVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD-------EF 73 (178)
Q Consensus 4 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-------~~ 73 (178)
++...|..+...+.+.|++++|.+.|++..+ .+...|..+-..+.+.|++++|.+.+++..+.. |+ ..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 4667888899999999999999999998653 377888899999999999999999999988764 44 44
Q ss_pred HHHHHHHHhccccchhhHHHHH
Q 036068 74 TIVSILTARANLRALDLGEWIK 95 (178)
Q Consensus 74 ~~~~ll~~~~~~~~~~~a~~~~ 95 (178)
.+..+-.++...|+.+.+...+
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHH
Confidence 5555555666666665554433
No 187
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.70 E-value=0.00019 Score=41.04 Aligned_cols=78 Identities=15% Similarity=0.324 Sum_probs=61.5
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 81 (178)
+...|..+...+.+.|++++|...|++..+ .+...+..+-..+.+.|++++|.+.|++..+.. +-+...+..+-.+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 567788899999999999999999997643 367788889999999999999999999988764 2244555554444
Q ss_pred hc
Q 036068 82 RA 83 (178)
Q Consensus 82 ~~ 83 (178)
+.
T Consensus 87 ~~ 88 (91)
T 1na3_A 87 KQ 88 (91)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.67 E-value=0.00041 Score=51.28 Aligned_cols=97 Identities=7% Similarity=-0.071 Sum_probs=68.0
Q ss_pred hHHHHHHHHHhhcCChhHHHHHHHHhHhC---------------CCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhC
Q 036068 38 VLWTAMIDGYLRVNRFREALTLFQEMQTS---------------NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK 102 (178)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 102 (178)
..+..+-..+.+.|++++|.+.|++..+. --.-+...|..+..++.+.+++++|...++...+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 35777888899999999999999987761 112245678888888899999999999998888754
Q ss_pred cccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 103 VKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 103 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
.. +... |..+..+|...|++++|.+.|++.++
T Consensus 304 p~-~~~a-----------------------~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 304 PS-NTKA-----------------------LYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp TT-CHHH-----------------------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ch-hHHH-----------------------HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 32 2333 44455555555666666666666554
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.67 E-value=0.00027 Score=45.85 Aligned_cols=93 Identities=14% Similarity=-0.027 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCC--CC--------h-----hHHHHHHHHHhhcCChhHHHHHHHHhHhC-----C
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPE--RD--------Y-----VLWTAMIDGYLRVNRFREALTLFQEMQTS-----N 67 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~~--------~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~ 67 (178)
.+...-..+.+.|++++|...|++..+ |+ . ..|..+-.++.+.|++++|+..+++..+. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 455566677788888888888887643 22 2 27777778888888888888888887664 1
Q ss_pred CCCc-HHHH----HHHHHHhccccchhhHHHHHHHHHH
Q 036068 68 IMGD-EFTI----VSILTARANLRALDLGEWIKTYIDK 100 (178)
Q Consensus 68 ~~~~-~~~~----~~ll~~~~~~~~~~~a~~~~~~m~~ 100 (178)
+.|+ ...| ...-.++...|++++|...|+...+
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1343 4456 6677778888888888888877665
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.63 E-value=0.0017 Score=42.11 Aligned_cols=115 Identities=16% Similarity=0.179 Sum_probs=81.6
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc-------------HHHHHHHHHHhccccchhhHHHHHHHHHHhCccc
Q 036068 39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD-------------EFTIVSILTARANLRALDLGEWIKTYIDKNKVKN 105 (178)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 105 (178)
.+...-..+.+.|++++|.+.|++..+.. |+ ...|...-.++.+.|++++|...++..++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l---- 86 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY---- 86 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----
Confidence 44556667888999999999999987653 33 338888899999999999999999888764
Q ss_pred chHHHHHHHHHHHhcCChhhhccchhhH----HHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCChhHHHHHH
Q 036068 106 DIFAGNALIDMYCICADVEKAQKDKFSW----TTMIVGLAISGNGDKALDMFSQMLR-----ASIKPDEVAYVGVL 172 (178)
Q Consensus 106 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~t~~~li 172 (178)
+-+.+..+. .+...| ...-.++...|++++|+..|++.++ .|+.+......-.+
T Consensus 87 -----------~n~~~e~~p--d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 87 -----------FNRRGELNQ--DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp -----------HHHHCCTTS--THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred -----------hhccccCCC--chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 111111110 123455 7777888899999999999998864 35655555444433
No 191
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.63 E-value=0.0072 Score=45.72 Aligned_cols=146 Identities=12% Similarity=0.033 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHHhcCCh----hHHHHHhccCCCCChhHHHHHHHHHhhcC---ChhHHHHHHHHhHhCCCCCcHHHHHHH
Q 036068 6 VISWTAIVSRYINRGQV----DIARQCFDQMPERDYVLWTAMIDGYLRVN---RFREALTLFQEMQTSNIMGDEFTIVSI 78 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~l 78 (178)
+..+..+...+...+.+ +.+..+++.....+...+..|-..|.+.| +.++|++.|++..+.| .++...+..+
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~L 219 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSV 219 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence 34455566666666633 33444555555555557777777777777 7777777777777766 3444544555
Q ss_pred HHHhccc----cchhhHHHHHHHHHHhCcccchHHHHHHHHH-H--HhcCChhhhc---------cchhhHHHHHHHHHh
Q 036068 79 LTARANL----RALDLGEWIKTYIDKNKVKNDIFAGNALIDM-Y--CICADVEKAQ---------KDKFSWTTMIVGLAI 142 (178)
Q Consensus 79 l~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~---------~~~~~~~~li~~~~~ 142 (178)
-..|... +++++|...|+... .| ++..+..+-.. | ...++.++|. .+...+..|-..|.
T Consensus 220 g~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~- 294 (452)
T 3e4b_A 220 ARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY- 294 (452)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred HHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-
Confidence 5555444 56777777777665 22 33344444443 2 3466666665 35555666665555
Q ss_pred cC-----ChhHHHHHHHHHH
Q 036068 143 SG-----NGDKALDMFSQML 157 (178)
Q Consensus 143 ~~-----~~~~a~~~~~~m~ 157 (178)
.| ++++|.+.|++..
T Consensus 295 ~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 295 EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HCSSSCCCHHHHHHHHHTTT
T ss_pred cCCCCCCCHHHHHHHHHHHh
Confidence 44 7777777777655
No 192
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.57 E-value=0.00066 Score=40.04 Aligned_cols=64 Identities=17% Similarity=0.007 Sum_probs=35.3
Q ss_pred ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHH
Q 036068 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK 100 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 100 (178)
+...+..+-..|.+.|++++|...|++..+.. +-+...|..+-.++.+.|++++|.+.++...+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455555555566666666666666655543 12344555555566666666666666655443
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.55 E-value=0.00028 Score=42.60 Aligned_cols=65 Identities=8% Similarity=-0.103 Sum_probs=48.2
Q ss_pred ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHh
Q 036068 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN 101 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 101 (178)
+...+..+-..|...|++++|...|++..+.. +.+...+..+..++.+.|++++|...++...+.
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56677777778888888888888888877654 234567777777788888888888888776654
No 194
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.47 E-value=0.00054 Score=51.68 Aligned_cols=88 Identities=5% Similarity=-0.077 Sum_probs=54.2
Q ss_pred HHHHHHhcCChhHHHHHhccCCC-------C----ChhHHHHHHHHHhhcCChhHHHHHHHHhHh-----CC-CCCc-HH
Q 036068 12 IVSRYINRGQVDIARQCFDQMPE-------R----DYVLWTAMIDGYLRVNRFREALTLFQEMQT-----SN-IMGD-EF 73 (178)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~-~~~~-~~ 73 (178)
.+..+.+.|++++|.+++++..+ + ...+++.|...|...|++++|..++++.+. .| -.|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 34556667777777777664421 1 344667777777777777777777776543 11 1122 34
Q ss_pred HHHHHHHHhccccchhhHHHHHHHHH
Q 036068 74 TIVSILTARANLRALDLGEWIKTYID 99 (178)
Q Consensus 74 ~~~~ll~~~~~~~~~~~a~~~~~~m~ 99 (178)
+++.|-..|...|++++|+.++++..
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 66677777777777777777776544
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.41 E-value=0.0003 Score=51.26 Aligned_cols=109 Identities=13% Similarity=0.043 Sum_probs=79.2
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCC--CCh------------------hHHHHHHHHHhhcCChhHHHHHHHHhHh
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMPE--RDY------------------VLWTAMIDGYLRVNRFREALTLFQEMQT 65 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~------------------~~~~~li~~~~~~~~~~~a~~~~~~m~~ 65 (178)
...|..+-..+.+.|++++|...|++..+ |+. ..|..+-.+|.+.|++++|...+++..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34577788888999999999999998543 332 2788888999999999999999999887
Q ss_pred CCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068 66 SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116 (178)
Q Consensus 66 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 116 (178)
.. +-+...|..+-.++...|++++|...|+...+.... +...+..+...
T Consensus 259 ~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l 307 (338)
T 2if4_A 259 EE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRAL 307 (338)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 64 336788999999999999999999999988765432 34444444433
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.37 E-value=0.0071 Score=36.17 Aligned_cols=71 Identities=10% Similarity=-0.129 Sum_probs=52.3
Q ss_pred hHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhh
Q 036068 54 REALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126 (178)
Q Consensus 54 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 126 (178)
++|.+.|++..+.. +.+...+..+..++.+.|++++|...++...+.... +...|..+-..|.+.|++++|
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A 72 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGA 72 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHH
Confidence 35677788877764 346778888999999999999999999999887643 355566666666666666655
No 197
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.32 E-value=0.0018 Score=48.87 Aligned_cols=89 Identities=10% Similarity=-0.030 Sum_probs=64.0
Q ss_pred hcCChhHHHHHHHHhHh---CCCCCc----HHHHHHHHHHhccccchhhHHHHHHHHHHh-----CcccchHHHHHHHHH
Q 036068 49 RVNRFREALTLFQEMQT---SNIMGD----EFTIVSILTARANLRALDLGEWIKTYIDKN-----KVKNDIFAGNALIDM 116 (178)
Q Consensus 49 ~~~~~~~a~~~~~~m~~---~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~~~~~~ll~~ 116 (178)
..|++++|..++++.++ .-+.|+ ..+++.+..+|...|++++|+.++++..+. |. .++.+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~-~Hp~~------- 381 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV-YSLNV------- 381 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS-SCHHH-------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC-CChHH-------
Confidence 45788999999988654 212222 468889999999999999999999877642 21 12221
Q ss_pred HHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 117 YCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
..+++.|...|..+|++++|..+|++.++
T Consensus 382 -------------a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 382 -------------ASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp -------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 34577788888888888888888887764
No 198
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.31 E-value=0.012 Score=42.28 Aligned_cols=38 Identities=5% Similarity=-0.372 Sum_probs=17.4
Q ss_pred cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChh
Q 036068 86 RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124 (178)
Q Consensus 86 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 124 (178)
++++++..+++.+.+...+ +..+|+.--..+.+.|.++
T Consensus 124 ~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~ 161 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHN 161 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTT
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccC
Confidence 3444555555555444322 3444444444444444443
No 199
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.27 E-value=0.0035 Score=47.31 Aligned_cols=96 Identities=13% Similarity=0.028 Sum_probs=68.4
Q ss_pred HHHHHhhcCChhHHHHHHHHhHhCC---CCC----cHHHHHHHHHHhccccchhhHHHHHHHHHHhC---c-ccchHHHH
Q 036068 43 MIDGYLRVNRFREALTLFQEMQTSN---IMG----DEFTIVSILTARANLRALDLGEWIKTYIDKNK---V-KNDIFAGN 111 (178)
Q Consensus 43 li~~~~~~~~~~~a~~~~~~m~~~~---~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~-~~~~~~~~ 111 (178)
.+..+.+.|++++|.+++++.++.. +.| ...+++.+..+|...|++++|+.++++..+.. . +.++.+
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~-- 370 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR-- 370 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH--
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH--
Confidence 3556667899999999999876531 222 25688899999999999999999998776421 1 112222
Q ss_pred HHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 112 ALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 112 ~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
..+++.|...|..+|++++|..++++.++
T Consensus 371 ------------------a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 371 ------------------GVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp ------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34567777778888888888888877764
No 200
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.27 E-value=0.00047 Score=52.08 Aligned_cols=83 Identities=10% Similarity=-0.056 Sum_probs=65.5
Q ss_pred hcCChhHHHHHhccCCC-------C----ChhHHHHHHHHHhhcCChhHHHHHHHHhHh-----CCC-CCc-HHHHHHHH
Q 036068 18 NRGQVDIARQCFDQMPE-------R----DYVLWTAMIDGYLRVNRFREALTLFQEMQT-----SNI-MGD-EFTIVSIL 79 (178)
Q Consensus 18 ~~~~~~~a~~~~~~m~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~-~~~-~~~~~~ll 79 (178)
..|++++|..++++..+ + ...+++.|...|...|++++|..++++.++ .|- .|+ ..+++.|-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 35788898888876531 2 456899999999999999999999999754 221 233 46789999
Q ss_pred HHhccccchhhHHHHHHHHHH
Q 036068 80 TARANLRALDLGEWIKTYIDK 100 (178)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~m~~ 100 (178)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999987654
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.20 E-value=0.0079 Score=35.25 Aligned_cols=85 Identities=12% Similarity=0.014 Sum_probs=58.9
Q ss_pred cHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHH
Q 036068 71 DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKAL 150 (178)
Q Consensus 71 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~ 150 (178)
+...+..+-.++.+.|++++|...++...+..+. +...|..+-..|.+.|++++|. ..|...+...-..++...+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~---~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAI---DTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHH---HHHHHHHHHHHHHSCHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHH---HHHHHHHhhhhcCCchhHHH
Confidence 5677888889999999999999999999987643 4566777777777777777663 34444554445555655555
Q ss_pred HHHHHHHHc
Q 036068 151 DMFSQMLRA 159 (178)
Q Consensus 151 ~~~~~m~~~ 159 (178)
++-.-+...
T Consensus 82 ~l~~~l~~~ 90 (100)
T 3ma5_A 82 ELQDAKLKA 90 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 554444443
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.16 E-value=0.0063 Score=38.13 Aligned_cols=110 Identities=10% Similarity=-0.084 Sum_probs=62.2
Q ss_pred ChhHHHHHhccCCCC-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc----ccchhhHHHHH
Q 036068 21 QVDIARQCFDQMPER-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN----LRALDLGEWIK 95 (178)
Q Consensus 21 ~~~~a~~~~~~m~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~ 95 (178)
++++|.+.|++.-+. +.... |-..|...+.+++|++.|++-.+.| +...+..+-..|.. .+++++|.++|
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 455555555544321 22222 4444444455555666666655543 33444444444444 45566666666
Q ss_pred HHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCC
Q 036068 96 TYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAI----SGNGDKALDMFSQMLRASI 161 (178)
Q Consensus 96 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~ 161 (178)
+...+.| +...+..|-..|.. .++.++|.+.|++..+.|.
T Consensus 85 ~~Aa~~g--------------------------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 85 SKACGLN--------------------------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHTT--------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCC--------------------------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 5555443 33445556666666 7899999999999988764
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.12 E-value=0.002 Score=41.65 Aligned_cols=112 Identities=18% Similarity=0.041 Sum_probs=78.4
Q ss_pred hcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccch----------hhHHHHHHHHHHhCcccchHHHHHHHHHHH
Q 036068 49 RVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL----------DLGEWIKTYIDKNKVKNDIFAGNALIDMYC 118 (178)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~----------~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 118 (178)
+.+.+++|.+.+++..+.. +-+...|..+-.++.+.+++ ++|...|+..++..+. ....|..+-.+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 4456788888888887765 34677777777777777665 4888888888887644 4566666666666
Q ss_pred hcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhhh
Q 036068 119 ICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176 (178)
Q Consensus 119 ~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~ 176 (178)
..|.+ .|+. -...|++++|.+.|++.++. .|+...|...+...-
T Consensus 92 ~lg~l---~P~~---------~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 92 SFAFL---TPDE---------TEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHH---CCCH---------HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred Hhccc---Ccch---------hhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 65543 1221 01137899999999999875 688888877766543
No 204
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.09 E-value=0.019 Score=46.20 Aligned_cols=76 Identities=14% Similarity=-0.002 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchh
Q 036068 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALD 89 (178)
Q Consensus 10 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 89 (178)
..++..+-+.|.+++|.++.+.-. .- .......|++++|.++.+.+ .+...|..+...+.+.++++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~----~~----f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD----QK----FELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH----HH----HHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCCcc----hh----eehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHH
Confidence 667777788888888887764311 11 22334567777777665443 34567777777777777777
Q ss_pred hHHHHHHHHH
Q 036068 90 LGEWIKTYID 99 (178)
Q Consensus 90 ~a~~~~~~m~ 99 (178)
.|++.|..+.
T Consensus 699 ~A~~~y~~~~ 708 (814)
T 3mkq_A 699 LAIEAFTNAH 708 (814)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHcc
Confidence 7777776653
No 205
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.03 E-value=0.0057 Score=49.19 Aligned_cols=46 Identities=24% Similarity=0.395 Sum_probs=27.5
Q ss_pred HHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHh
Q 036068 16 YINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63 (178)
Q Consensus 16 ~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 63 (178)
....|+++.|.++.+.+. +...|..|-..+.+.++++.|.++|.++
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 345566666666665553 3456666666666666666666666654
No 206
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=96.96 E-value=0.064 Score=39.30 Aligned_cols=153 Identities=9% Similarity=0.007 Sum_probs=107.9
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcC-ChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068 9 WTAIVSRYINRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVN-RFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84 (178)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 84 (178)
++.+-....+.+.-++|+++++++.. .+...|+.--..+...| .+++++++++.+....-+ +..+|+---.++.+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 34434444445555689999998864 36667777666677777 599999999999887633 55666655555544
Q ss_pred c-c-chhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChh--------hhc-----------cchhhHHHHHHHHHhc
Q 036068 85 L-R-ALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE--------KAQ-----------KDKFSWTTMIVGLAIS 143 (178)
Q Consensus 85 ~-~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~-----------~~~~~~~~li~~~~~~ 143 (178)
. + +++++.++++.+.+... .+...|+.--..+.+.|.++ ++. .|...|+.....+.+.
T Consensus 136 l~~~~~~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred hcCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 4 5 78899999999988764 36788887666666655555 333 5888899888888887
Q ss_pred CC-------hhHHHHHHHHHHHcCCCCCh
Q 036068 144 GN-------GDKALDMFSQMLRASIKPDE 165 (178)
Q Consensus 144 ~~-------~~~a~~~~~~m~~~g~~p~~ 165 (178)
++ ++++++.+++.+.. .|+.
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~--~P~n 241 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHL--IPHN 241 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHH--CTTC
T ss_pred cccccchHHHHHHHHHHHHHHHh--CCCC
Confidence 76 68899999888864 4544
No 207
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.85 E-value=0.084 Score=41.28 Aligned_cols=145 Identities=10% Similarity=0.009 Sum_probs=105.1
Q ss_pred HhcCCh-hHHHHHhccCCC--C-ChhHHHHHHHHHhhcCC----------hhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068 17 INRGQV-DIARQCFDQMPE--R-DYVLWTAMIDGYLRVNR----------FREALTLFQEMQTSNIMGDEFTIVSILTAR 82 (178)
Q Consensus 17 ~~~~~~-~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 82 (178)
.+.|.+ ++|.+.++++.. | +...|+.-=..+.+.|+ +++++++++++.+..-+ +..+|.----++
T Consensus 39 ~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l 117 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLL 117 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 344444 567888887764 3 55667665555555555 89999999999887533 566776666666
Q ss_pred cccc--chhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcC-Chhhhc-----------cchhhHHHHHHHHHhc-----
Q 036068 83 ANLR--ALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA-DVEKAQ-----------KDKFSWTTMIVGLAIS----- 143 (178)
Q Consensus 83 ~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~-----------~~~~~~~~li~~~~~~----- 143 (178)
.+.+ +++++.+.++.+.+.... +.+.|+.--..+.+.| .++++. .|...|+.....+.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 7777 669999999999998754 6888988888888888 666554 4788888877776663
Q ss_pred ---------CChhHHHHHHHHHHHcCCCCCh
Q 036068 144 ---------GNGDKALDMFSQMLRASIKPDE 165 (178)
Q Consensus 144 ---------~~~~~a~~~~~~m~~~g~~p~~ 165 (178)
+.++++++++++.... .|+.
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~--~P~~ 225 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFT--DPND 225 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHH--CSSC
T ss_pred ccccccccHHHHHHHHHHHHHHHhh--CCCC
Confidence 5578999999988864 4543
No 208
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.84 E-value=0.016 Score=33.45 Aligned_cols=57 Identities=9% Similarity=-0.066 Sum_probs=33.9
Q ss_pred HHHhhcCChhHHHHHHHHhHhCCCCCcHH-HHHHHHHHhccccchhhHHHHHHHHHHhC
Q 036068 45 DGYLRVNRFREALTLFQEMQTSNIMGDEF-TIVSILTARANLRALDLGEWIKTYIDKNK 102 (178)
Q Consensus 45 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 102 (178)
..+.+.|++++|...|++..+.. +.+.. .+..+-.++.+.|++++|.+.++...+..
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34555666666666666665543 12334 55566666666666666666666666554
No 209
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=96.77 E-value=0.051 Score=39.50 Aligned_cols=140 Identities=9% Similarity=-0.006 Sum_probs=99.5
Q ss_pred hhHHHHHhccCCC---CChhHHHHHHHHHhhcC--ChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccc-hhhHHHHH
Q 036068 22 VDIARQCFDQMPE---RDYVLWTAMIDGYLRVN--RFREALTLFQEMQTSNIMGDEFTIVSILTARANLRA-LDLGEWIK 95 (178)
Q Consensus 22 ~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~ 95 (178)
+++++.+++.+.. ++..+|+.--..+.+.+ .+++++++++++.+... -|...|+----++.+.|. ++++.+.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5677777777653 47788887777777777 48899999999988763 366777666666666677 58899999
Q ss_pred HHHHHhCcccchHHHHHHHHHHHhcC--------------Chhhhc-----------cchhhHHHHHHHHHhc-------
Q 036068 96 TYIDKNKVKNDIFAGNALIDMYCICA--------------DVEKAQ-----------KDKFSWTTMIVGLAIS------- 143 (178)
Q Consensus 96 ~~m~~~~~~~~~~~~~~ll~~~~~~~--------------~~~~a~-----------~~~~~~~~li~~~~~~------- 143 (178)
+.+++..+. +...|+..-..+.+.+ .++++. .|...|+-+--.+.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~ 247 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELS 247 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccc
Confidence 999887753 6777887766666552 233332 4778887665555554
Q ss_pred ----CChhHHHHHHHHHHHcCCCCCh
Q 036068 144 ----GNGDKALDMFSQMLRASIKPDE 165 (178)
Q Consensus 144 ----~~~~~a~~~~~~m~~~g~~p~~ 165 (178)
+.++++++.++++.+. .||.
T Consensus 248 ~~~~~~l~~el~~~~elle~--~pd~ 271 (331)
T 3dss_A 248 VEKSTVLQSELESCKELQEL--EPEN 271 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred hHHHHHHHHHHHHHHHHHhh--Cccc
Confidence 4578999999999875 5765
No 210
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=96.55 E-value=0.13 Score=37.35 Aligned_cols=153 Identities=12% Similarity=-0.003 Sum_probs=106.6
Q ss_pred CcchhHHHHHHHHHHhcC--ChhHHHHHhccCCC---CChhHHHHHHHHHhhcCC-hhHHHHHHHHhHhCCCCCcHHHHH
Q 036068 3 NKDVISWTAIVSRYINRG--QVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNR-FREALTLFQEMQTSNIMGDEFTIV 76 (178)
Q Consensus 3 ~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~ 76 (178)
+.+..+|+.--..+.+.| ++++++++++++.+ .|...|+.--..+...|. ++++++.++++.+... -|...|+
T Consensus 105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~ 183 (331)
T 3dss_A 105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWH 183 (331)
T ss_dssp TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHH
T ss_pred CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHH
Confidence 356677887777777777 48999999998864 588888887777778887 5899999999988764 4777776
Q ss_pred HHHHHhccc--------------cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhc-C----------Chhhhc----
Q 036068 77 SILTARANL--------------RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC-A----------DVEKAQ---- 127 (178)
Q Consensus 77 ~ll~~~~~~--------------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-~----------~~~~a~---- 127 (178)
-....+.+. +.++++.+.+.......+ -+...|+-+-..+.+. | .++++.
T Consensus 184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ 262 (331)
T 3dss_A 184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCK 262 (331)
T ss_dssp HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHH
Confidence 555554433 457788888888887764 4788888666666555 2 122222
Q ss_pred ------cchhhHHHHHH-----HHHhcCChhHHHHHHHHHHH
Q 036068 128 ------KDKFSWTTMIV-----GLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 128 ------~~~~~~~~li~-----~~~~~~~~~~a~~~~~~m~~ 158 (178)
||. .|+.+-. +....|..+++...+.++.+
T Consensus 263 elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 263 ELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 543 4543222 22246778888999999875
No 211
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.53 E-value=0.15 Score=39.11 Aligned_cols=149 Identities=14% Similarity=0.064 Sum_probs=97.5
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCC-C-----------------------------------------ChhHHHHH
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMPE-R-----------------------------------------DYVLWTAM 43 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~-----------------------------------------~~~~~~~l 43 (178)
...|-..+..+.+.|+.+.|..++++... | ....|-..
T Consensus 213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y 292 (493)
T 2uy1_A 213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINH 292 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHH
Confidence 45566666677777777777777664210 1 01223344
Q ss_pred HHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHH--HHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcC
Q 036068 44 IDGYLRVNRFREALTLFQEMQTSNIMGDEFTIV--SILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICA 121 (178)
Q Consensus 44 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 121 (178)
+....+.++.+.|..+|++. +.. ..+...|. +.+.... .++.+.|..+|+...+.... ++..|...++...+.|
T Consensus 293 ~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~ 368 (493)
T 2uy1_A 293 LNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIG 368 (493)
T ss_dssp HHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcC
Confidence 44444567789999999988 321 12334443 2222222 23689999999988876432 3555666777777888
Q ss_pred Chhhhc-------cchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 122 DVEKAQ-------KDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 122 ~~~~a~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
+.+.|. .....|...+.--...|+.+.+..++++..+
T Consensus 369 ~~~~aR~l~er~~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 369 DEENARALFKRLEKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp CHHHHHHHHHHSCCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 887765 3577788888877888999999999988875
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.47 E-value=0.0039 Score=36.16 Aligned_cols=56 Identities=20% Similarity=0.344 Sum_probs=47.9
Q ss_pred HHHHHHhcCChhHHHHHhccCCC--C-Chh-HHHHHHHHHhhcCChhHHHHHHHHhHhCC
Q 036068 12 IVSRYINRGQVDIARQCFDQMPE--R-DYV-LWTAMIDGYLRVNRFREALTLFQEMQTSN 67 (178)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~--~-~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 67 (178)
....+.+.|++++|.+.|++..+ | +.. .|..+-..|...|++++|.+.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 45678899999999999998753 3 566 88888899999999999999999988764
No 213
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.22 E-value=0.01 Score=38.36 Aligned_cols=96 Identities=17% Similarity=0.041 Sum_probs=69.5
Q ss_pred HhcCChhHHHHHhccCCC---CChhHHHHHHHHHhhcCCh----------hHHHHHHHHhHhCCCCCcHHHHHHHHHHhc
Q 036068 17 INRGQVDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRF----------REALTLFQEMQTSNIMGDEFTIVSILTARA 83 (178)
Q Consensus 17 ~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~----------~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 83 (178)
.+.+.+++|.+.+++..+ .+...|..+-.++.+.+++ ++|+..|++..+.. +-+...|..+-.+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 455667888888876642 3777787777777777654 59999999988865 225678888888888
Q ss_pred ccc-----------chhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068 84 NLR-----------ALDLGEWIKTYIDKNKVKNDIFAGNALID 115 (178)
Q Consensus 84 ~~~-----------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 115 (178)
+.| ++++|.+.|+...+.. |+...|...+.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y~~al~ 132 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLKSLE 132 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 764 8999999999988864 44444444433
No 214
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.088 Score=34.58 Aligned_cols=98 Identities=9% Similarity=0.084 Sum_probs=65.7
Q ss_pred HHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHH
Q 036068 13 VSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGE 92 (178)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 92 (178)
.....+.|+++.|.++.+++ .+...|..|-....+.|+++-|.++|++... +..+...|.-.|+.+...
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34456789999998888776 4677899999999999999999998888543 233444445556665555
Q ss_pred HHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 93 WIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 93 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
.+-+.-...| . ++.....+.-.|+++++.
T Consensus 81 kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i 109 (177)
T 3mkq_B 81 KMQNIAQTRE-D-----FGSMLLNTFYNNSTKERS 109 (177)
T ss_dssp HHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHH
Confidence 5544444443 2 445555566677777654
No 215
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.19 E-value=0.082 Score=33.31 Aligned_cols=69 Identities=12% Similarity=-0.089 Sum_probs=59.3
Q ss_pred ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCccc
Q 036068 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKN 105 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 105 (178)
+...++..+..+...|.-++-.+++..+.. +..|++.....+..+|.+.|+..++.+++.+.-+.|++-
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~kE 158 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEKE 158 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhHH
Confidence 667788899999999999999999999654 347888999999999999999999999999999998753
No 216
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.12 E-value=0.035 Score=34.63 Aligned_cols=90 Identities=9% Similarity=-0.105 Sum_probs=72.2
Q ss_pred HHHHHHhcCChhHHHHHhccCCC-CChhHHHHHHHHHhh----cCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc--
Q 036068 12 IVSRYINRGQVDIARQCFDQMPE-RDYVLWTAMIDGYLR----VNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN-- 84 (178)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-- 84 (178)
+-..|...+.+++|.+.|++.-+ .+...+..|-..|.. .++.++|++.|++-.+.| +...+..+-..|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~ 107 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGK 107 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCC
Confidence 55556666778888888887654 477788888888887 789999999999998876 45666777777777
Q ss_pred --ccchhhHHHHHHHHHHhCcc
Q 036068 85 --LRALDLGEWIKTYIDKNKVK 104 (178)
Q Consensus 85 --~~~~~~a~~~~~~m~~~~~~ 104 (178)
.+++++|.+.++...+.|..
T Consensus 108 g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 108 GVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCH
T ss_pred CCCcCHHHHHHHHHHHHHCCCH
Confidence 78999999999999988754
No 217
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.09 E-value=0.045 Score=42.81 Aligned_cols=114 Identities=8% Similarity=-0.061 Sum_probs=88.2
Q ss_pred chhHHHHHHHHHHhcCC----------hhHHHHHhccCCC---CChhHHHHHHHHHhhcC--ChhHHHHHHHHhHhCCCC
Q 036068 5 DVISWTAIVSRYINRGQ----------VDIARQCFDQMPE---RDYVLWTAMIDGYLRVN--RFREALTLFQEMQTSNIM 69 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~ 69 (178)
+..+|+.--..+.+.|+ +++++++++++.+ ++..+|+.--..+.+.+ ++++++++++++.+....
T Consensus 62 ~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~ 141 (567)
T 1dce_A 62 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER 141 (567)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc
Confidence 34457766666666666 8899999998764 47888888888888888 679999999999987643
Q ss_pred CcHHHHHHHHHHhcccc-chhhHHHHHHHHHHhCcccchHHHHHHHHHHHhc
Q 036068 70 GDEFTIVSILTARANLR-ALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120 (178)
Q Consensus 70 ~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 120 (178)
+...|+---.++.+.+ .++++.+.++.+++..+. +...|+..-..+.+.
T Consensus 142 -N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l 191 (567)
T 1dce_A 142 -NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQL 191 (567)
T ss_dssp -CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhh
Confidence 7777877766777777 788899999888887643 678888887777764
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.06 E-value=0.056 Score=31.40 Aligned_cols=48 Identities=8% Similarity=-0.119 Sum_probs=21.6
Q ss_pred hhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHh
Q 036068 53 FREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN 101 (178)
Q Consensus 53 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 101 (178)
.++|..+|++.++.. +-+......+-..+.+.|++++|...|+.+.+.
T Consensus 25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344555555544432 112333344444444555555555555554443
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.89 E-value=0.12 Score=30.43 Aligned_cols=63 Identities=5% Similarity=-0.091 Sum_probs=40.3
Q ss_pred HHHHHHHhhcCChhHHHHHHHHhHhC------CCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCc
Q 036068 41 TAMIDGYLRVNRFREALTLFQEMQTS------NIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV 103 (178)
Q Consensus 41 ~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 103 (178)
-.|-..+.+.|+++.|...|++..+. .-.+....+..+..++.+.|++++|...++...+..+
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 34555666667777777766665432 1133556677777777777777777777777766543
No 220
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=95.85 E-value=0.13 Score=30.46 Aligned_cols=64 Identities=11% Similarity=-0.020 Sum_probs=52.5
Q ss_pred ChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068 52 RFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116 (178)
Q Consensus 52 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 116 (178)
+.=+..+.++.+....+.|+.....+.+++|.|.+++..|.++++.++..- .....+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHH
Confidence 445677888888999999999999999999999999999999999887543 2235567777764
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.84 E-value=0.036 Score=32.21 Aligned_cols=65 Identities=14% Similarity=0.108 Sum_probs=53.4
Q ss_pred CcchhHHHHHHHHHHhcCC---hhHHHHHhccCCC---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCC
Q 036068 3 NKDVISWTAIVSRYINRGQ---VDIARQCFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN 67 (178)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 67 (178)
++|+..+..+..++...++ .++|..++++..+ .++.....+-..+.+.|++++|...|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4677778888888865554 7899999998763 377788888889999999999999999998875
No 222
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.83 E-value=0.71 Score=39.25 Aligned_cols=137 Identities=13% Similarity=0.086 Sum_probs=89.2
Q ss_pred HHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCC--------------------
Q 036068 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIM-------------------- 69 (178)
Q Consensus 10 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-------------------- 69 (178)
..++..+.+.+.++.+.++....+.....+| .+-.+|...|++++|.++|++.-. |+.
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~y-l~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNSDPIAVY-LKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCCCHHHHH-HHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccCCcHHHH-HHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccccc
Confidence 3466778888888888888777765433333 455678889999999999977411 110
Q ss_pred ---CcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccc----hHHHHHHHHHHHhcCChhhhc------cc----hhh
Q 036068 70 ---GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKND----IFAGNALIDMYCICADVEKAQ------KD----KFS 132 (178)
Q Consensus 70 ---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~------~~----~~~ 132 (178)
.-..-|.-++..+.+.+.++.+.++-...++....-+ ...|..+...+...|++++|. || ...
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~c 973 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSC 973 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHH
Confidence 0112356677777788888888777666555432111 236788889999999999986 22 344
Q ss_pred HHHHHHHHHhcCChhH
Q 036068 133 WTTMIVGLAISGNGDK 148 (178)
Q Consensus 133 ~~~li~~~~~~~~~~~ 148 (178)
...|+..+|..|..+.
T Consensus 974 Lr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 974 LLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHhCCChhh
Confidence 5566666666655433
No 223
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.79 E-value=0.00056 Score=52.18 Aligned_cols=135 Identities=11% Similarity=0.064 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccc
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL 85 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 85 (178)
+.+|+.|-.+..+.+++.+|++-|- +..|+..|..+|.+..+.|.+++-...++-.++..-.| ..=+.|+-+|++.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHTS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHhh
Confidence 3457777788888887777776553 34566778888999899999888887666554443333 3335688889888
Q ss_pred cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc--------------------------------cchhhH
Q 036068 86 RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------------------------------KDKFSW 133 (178)
Q Consensus 86 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--------------------------------~~~~~~ 133 (178)
++..+.++++. .|+..-...+-+-+...|.++.|. .++.||
T Consensus 130 ~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktW 202 (624)
T 3lvg_A 130 NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTW 202 (624)
T ss_dssp CSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSH
T ss_pred CcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 88776555541 133333334444444444444443 478888
Q ss_pred HHHHHHHHhcCChhHHHH
Q 036068 134 TTMIVGLAISGNGDKALD 151 (178)
Q Consensus 134 ~~li~~~~~~~~~~~a~~ 151 (178)
..+-.+|+..+++..|.-
T Consensus 203 KeV~~ACvd~~EfrLAqi 220 (624)
T 3lvg_A 203 KEVCFACVDGKEFRLAQM 220 (624)
T ss_dssp HHHTHHHHHSCTTTTTTH
T ss_pred HHHHHHHhCchHHHHHHH
Confidence 888888888877766653
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.74 E-value=0.16 Score=32.53 Aligned_cols=112 Identities=7% Similarity=0.005 Sum_probs=78.3
Q ss_pred CCcchhHHHHHHHHHHhcCCh------hHHHHHhccCCC---C----ChhHHHHHHH---HHhhcCChhHHHHHHHHhHh
Q 036068 2 KNKDVISWTAIVSRYINRGQV------DIARQCFDQMPE---R----DYVLWTAMID---GYLRVNRFREALTLFQEMQT 65 (178)
Q Consensus 2 ~~p~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~---~----~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~ 65 (178)
.+-|..+|-..+...-+.|+. +...++|++... | ....|--|-- .+...++.++|.++|+.+.+
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 456788888888888888998 777777775431 1 2222222211 11234789999999999976
Q ss_pred CCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068 66 SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID 115 (178)
Q Consensus 66 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 115 (178)
.+-.. +..|....+.=.+.|+++.|.+++..-+..+..| ...+...+.
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 65555 7777777777789999999999999999988776 344444444
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.23 E-value=0.32 Score=31.06 Aligned_cols=91 Identities=12% Similarity=0.035 Sum_probs=60.2
Q ss_pred ChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcccc---chhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhcc
Q 036068 52 RFREALTLFQEMQTSNIMGDEFTIVSILTARANLR---ALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQK 128 (178)
Q Consensus 52 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 128 (178)
....+.+-|.+....|. ++..+...+--++++.+ +.+++..+++.+.+.. .|+.
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~--------------------- 69 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEE--------------------- 69 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHH---------------------
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-Cccc---------------------
Confidence 34566667777666654 67777777777888877 6778999998888865 2210
Q ss_pred chhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhH
Q 036068 129 DKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVA 167 (178)
Q Consensus 129 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t 167 (178)
+...+-.|-.++.+.|++++|.++++++++. .|+..-
T Consensus 70 ~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i--eP~n~Q 106 (152)
T 1pc2_A 70 QRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--EPQNNQ 106 (152)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHH
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHH
Confidence 1122334555667788888888888888764 565433
No 226
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.10 E-value=0.17 Score=37.57 Aligned_cols=71 Identities=8% Similarity=-0.078 Sum_probs=58.2
Q ss_pred HHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHH-----hCcccchHHHHH
Q 036068 41 TAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK-----NKVKNDIFAGNA 112 (178)
Q Consensus 41 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~~~ 112 (178)
..++..+...|+.+++...+..+.... +.+...+..+|.++.+.|+..+|.+.|+.+.+ .|++|++.+-..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 346677778999999999999887764 55788999999999999999999999987653 599998776433
No 227
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.01 E-value=0.74 Score=33.99 Aligned_cols=131 Identities=11% Similarity=0.029 Sum_probs=81.1
Q ss_pred ChhHHHHHHHHHhh--cC---ChhHHHHHHHHhHhCCCCCc-HHHHHHHHHHhc----ccc-chhhHHHHHHHHHH----
Q 036068 36 DYVLWTAMIDGYLR--VN---RFREALTLFQEMQTSNIMGD-EFTIVSILTARA----NLR-ALDLGEWIKTYIDK---- 100 (178)
Q Consensus 36 ~~~~~~~li~~~~~--~~---~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~----~~~-~~~~a~~~~~~m~~---- 100 (178)
+...|...+++... .+ +..+|..+|++..+. .|+ ...+..+.-++. ... ..+....+-..+..
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 77788888866543 22 357888999988776 455 233332222221 100 11111111111111
Q ss_pred hCcccchHHHHHHHHHHHhcCChhhhc----------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHH
Q 036068 101 NKVKNDIFAGNALIDMYCICADVEKAQ----------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVG 170 (178)
Q Consensus 101 ~~~~~~~~~~~~ll~~~~~~~~~~~a~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ 170 (178)
..-+.++.++..+...+...|+++.|. |+...|..+-..+.-.|++++|.+.|++.... .|...||..
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~ 348 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYW 348 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHH
Confidence 122456777777777777779999887 56656666677788899999999999998865 587777654
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.76 E-value=0.25 Score=28.97 Aligned_cols=77 Identities=12% Similarity=0.009 Sum_probs=52.6
Q ss_pred CcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHH
Q 036068 70 GDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKA 149 (178)
Q Consensus 70 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a 149 (178)
.+..-+..+-..+.+.++++.|...++...+.-.+.+. ........+..|..++.+.|++++|
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-----------------~~~~~~~i~~~L~~~~~~~g~~~~A 65 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-----------------STIDKVSVLDYLSYAVYQQGDLDKA 65 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-----------------CSSCHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-----------------CcccHHHHHHHHHHHHHHccCHHHH
Confidence 45667778888999999999999999887764211110 0012344566777777788888888
Q ss_pred HHHHHHHHHcCCCCCh
Q 036068 150 LDMFSQMLRASIKPDE 165 (178)
Q Consensus 150 ~~~~~~m~~~g~~p~~ 165 (178)
..++++..+. .|+.
T Consensus 66 ~~~~~~al~l--~P~~ 79 (104)
T 2v5f_A 66 LLLTKKLLEL--DPEH 79 (104)
T ss_dssp HHHHHHHHHH--CTTC
T ss_pred HHHHHHHHhc--CCCC
Confidence 8888887753 4554
No 229
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.60 E-value=0.22 Score=36.73 Aligned_cols=57 Identities=7% Similarity=-0.238 Sum_probs=36.3
Q ss_pred CCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 69 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
..+..+|.++...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~ 330 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAA 330 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHH
Confidence 4455666666555555577777777777776665 45555555556666677777765
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.59 E-value=0.23 Score=35.38 Aligned_cols=92 Identities=10% Similarity=-0.049 Sum_probs=69.0
Q ss_pred hHHHHHhccCCC--C---ChhHHHHHHHHHhhc-----CChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccc-cchhhH
Q 036068 23 DIARQCFDQMPE--R---DYVLWTAMIDGYLRV-----NRFREALTLFQEMQTSNIMGDEFTIVSILTARANL-RALDLG 91 (178)
Q Consensus 23 ~~a~~~~~~m~~--~---~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-~~~~~a 91 (178)
..|...+++..+ | +-..|..|...|.+. |+.++|.+.|++-++.+-.-+..++......+++. ++.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 345555554432 4 355888999999985 99999999999988865222477788899999885 999999
Q ss_pred HHHHHHHHHhCcc--cchHHHHHHH
Q 036068 92 EWIKTYIDKNKVK--NDIFAGNALI 114 (178)
Q Consensus 92 ~~~~~~m~~~~~~--~~~~~~~~ll 114 (178)
.+.++...+..+. |+....+.+-
T Consensus 260 ~~~L~kAL~a~p~~~P~~~lan~~~ 284 (301)
T 3u64_A 260 DEALDRALAIDPESVPHNKLLVILS 284 (301)
T ss_dssp HHHHHHHHHCCGGGCSSCHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCChhHHHHHH
Confidence 9999999998876 6665555443
No 231
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=94.48 E-value=0.49 Score=29.60 Aligned_cols=64 Identities=11% Similarity=-0.020 Sum_probs=51.8
Q ss_pred ChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068 52 RFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116 (178)
Q Consensus 52 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 116 (178)
|.=+..+-++.+....+.|+.....+.+++|.+.+|+..|.++++.++..- .+...+|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHH
Confidence 344567777888889999999999999999999999999999999887643 3335567777764
No 232
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=94.29 E-value=0.26 Score=37.75 Aligned_cols=113 Identities=7% Similarity=0.083 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHhcCChhHHHHHhccCCCCC--hhHHH--HHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068 7 ISWTAIVSRYINRGQVDIARQCFDQMPERD--YVLWT--AMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR 82 (178)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 82 (178)
..|...++...+.+.++.|..+|++...|+ ...|- +.+.... .++.+.|.++|+...+.- .-+...+...++..
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e 364 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 567788888888899999999999884443 23332 2222222 236999999999987753 11234456677777
Q ss_pred ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhh
Q 036068 83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126 (178)
Q Consensus 83 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 126 (178)
.+.|+.+.|..+|+... .+...|...+..-...|+.+.+
T Consensus 365 ~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~ 403 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELF 403 (493)
T ss_dssp HHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHH
T ss_pred HHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHH
Confidence 88899999999998862 2567777777776777776643
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.14 E-value=0.69 Score=37.48 Aligned_cols=114 Identities=11% Similarity=-0.058 Sum_probs=69.3
Q ss_pred HHHHHHHhhcCC-hhHHHHHHHHhHhCCCCCcHHHH--HHHHHHhccccc-hhhHHHHHHHHHHh------Cccc-ch--
Q 036068 41 TAMIDGYLRVNR-FREALTLFQEMQTSNIMGDEFTI--VSILTARANLRA-LDLGEWIKTYIDKN------KVKN-DI-- 107 (178)
Q Consensus 41 ~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~--~~ll~~~~~~~~-~~~a~~~~~~m~~~------~~~~-~~-- 107 (178)
..|+..+...++ .+.|..+|+++.... |...++ ..++..+.+.++ --+|.+++.+..+. ...+ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 345555555555 588999999988874 443332 233443333332 22344444433321 1111 11
Q ss_pred --------HHHHHHHHHHHhcCChhhhc----------c-chhhHHHHHHHHHhcCChhHHHHHHHHH
Q 036068 108 --------FAGNALIDMYCICADVEKAQ----------K-DKFSWTTMIVGLAISGNGDKALDMFSQM 156 (178)
Q Consensus 108 --------~~~~~ll~~~~~~~~~~~a~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m 156 (178)
...+.=.+.+...|+++.|. | +..+|..|...|...|+++.|+-.++-+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11222233456689999988 4 6899999999999999999999988877
No 234
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=93.93 E-value=0.64 Score=28.75 Aligned_cols=70 Identities=13% Similarity=0.270 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCCCC---hhHHHHHHHHHhhcCC--hhHHHHHHHHhHhCCCCCcHHHHHHH
Q 036068 9 WTAIVSRYINRGQVDIARQCFDQMPERD---YVLWTAMIDGYLRVNR--FREALTLFQEMQTSNIMGDEFTIVSI 78 (178)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~l 78 (178)
-..+|.-|...|+.++|.+.++++..|. ..+...+..++-+.++ -+.+..++..+...|+.+.......+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf 84 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGY 84 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHH
Confidence 4567888888888888888888887662 2234445555555432 35677777777777766555443333
No 235
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.82 E-value=0.23 Score=36.83 Aligned_cols=68 Identities=21% Similarity=0.238 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHh-----CCCCCcHHHHH
Q 036068 9 WTAIVSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQT-----SNIMGDEFTIV 76 (178)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~~ 76 (178)
...++..+...|+++++...+..+.. | +...|..+|.++.+.|+..+|.+.|++..+ .|+.|+..+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 34567788889999999988877653 4 777999999999999999999999998744 59999987643
No 236
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.71 E-value=0.35 Score=30.89 Aligned_cols=68 Identities=7% Similarity=0.001 Sum_probs=53.8
Q ss_pred CChhHHHHHHHHHhhcC---ChhHHHHHHHHhHhCCCCC--cHHHHHHHHHHhccccchhhHHHHHHHHHHhCc
Q 036068 35 RDYVLWTAMIDGYLRVN---RFREALTLFQEMQTSNIMG--DEFTIVSILTARANLRALDLGEWIKTYIDKNKV 103 (178)
Q Consensus 35 ~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 103 (178)
++..+.-.+-.++++++ +.+++..+|++..+.. .| ....+-.+--++.+.+++++|.+.++.+.+..+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP 102 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 102 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 46666666777888887 6779999999988875 34 345556677788999999999999999998764
No 237
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=93.52 E-value=1.3 Score=32.26 Aligned_cols=141 Identities=8% Similarity=-0.034 Sum_probs=80.2
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCCCCh---hHHHHHHHHHhhcC-ChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068 9 WTAIVSRYINRGQVDIARQCFDQMPERDY---VLWTAMIDGYLRVN-RFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84 (178)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 84 (178)
-..++.-|...|+.++|...++++..|.. .....+..++-+.. .-+.+..++..+.+.|+.+.......+-+.+..
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~ 93 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILEL 93 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhh
Confidence 46789999999999999999999998742 22333333333321 235577788888877776555443333333333
Q ss_pred cc----chhhHHHHHHHHHHh----CcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHH
Q 036068 85 LR----ALDLGEWIKTYIDKN----KVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQ 155 (178)
Q Consensus 85 ~~----~~~~a~~~~~~m~~~----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 155 (178)
.. |...|...+..+... |.-|-...++.+...+...|... .....++..+.+....+.+.++|++
T Consensus 94 l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~------~fl~~vl~~l~~~~g~~~l~~~~~~ 166 (339)
T 1ug3_A 94 AEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAA------SLLLEILGLLCKSMGPKKVGTLWRE 166 (339)
T ss_dssp HHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHH------HHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred ChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHH------HHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 22 456777777766543 43332233333333333333222 2344455555666666666666653
No 238
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=92.79 E-value=0.67 Score=29.59 Aligned_cols=74 Identities=12% Similarity=0.231 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCCCC---hhHHHHHHHHHhhcCC--hhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068 9 WTAIVSRYINRGQVDIARQCFDQMPERD---YVLWTAMIDGYLRVNR--FREALTLFQEMQTSNIMGDEFTIVSILTAR 82 (178)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 82 (178)
-+.+|.-|...|+.++|.+.++++..|. ..+...+..++-+.++ -+.+..++..+...|+.+.......+-+.+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~vl 90 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 90 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 4677888888889999988888887762 2334445555555332 455777788887777665555443333333
No 239
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.34 E-value=2.2 Score=30.47 Aligned_cols=125 Identities=10% Similarity=0.050 Sum_probs=75.8
Q ss_pred CChhHHHHHhccCCCCCh--hHHHHHHH-HHhhc--CC------hhHHHHHHHHhHhCCCCCc---HHHHHHHHHHhccc
Q 036068 20 GQVDIARQCFDQMPERDY--VLWTAMID-GYLRV--NR------FREALTLFQEMQTSNIMGD---EFTIVSILTARANL 85 (178)
Q Consensus 20 ~~~~~a~~~~~~m~~~~~--~~~~~li~-~~~~~--~~------~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~ 85 (178)
++..+..+.+.+....++ ..|..++. .++.. |+ ...|...+++..+. .|+ -..|..+-..|.+.
T Consensus 135 ~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~v 212 (301)
T 3u64_A 135 GDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAA 212 (301)
T ss_dssp SCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHS
T ss_pred cchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhC
Confidence 344455566666654433 35665554 33432 32 45666666766664 466 45788888888874
Q ss_pred -----cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHh-cCChhHHHHHHHHHHHc
Q 036068 86 -----RALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAI-SGNGDKALDMFSQMLRA 159 (178)
Q Consensus 86 -----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~ 159 (178)
|+.++|.+.|++..+.++.-+..++ ......+++ .|+.+++.+++++.+..
T Consensus 213 Pp~~gGd~ekA~~~ferAL~LnP~~~id~~-----------------------v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 213 PESFGGGMEKAHTAFEHLTRYCSAHDPDHH-----------------------ITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHCCTTCSHHH-----------------------HHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred CCccCCCHHHHHHHHHHHHHhCCCCCchHH-----------------------HHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 9999999999999887653223333 334444455 36667777777777765
Q ss_pred CCC--CChhHHH
Q 036068 160 SIK--PDEVAYV 169 (178)
Q Consensus 160 g~~--p~~~t~~ 169 (178)
... |+....+
T Consensus 270 ~p~~~P~~~lan 281 (301)
T 3u64_A 270 DPESVPHNKLLV 281 (301)
T ss_dssp CGGGCSSCHHHH
T ss_pred CCCCCCChhHHH
Confidence 444 5544433
No 240
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.28 E-value=4.8 Score=34.29 Aligned_cols=147 Identities=10% Similarity=0.034 Sum_probs=100.7
Q ss_pred HHHHHHHHhcCChhHHHHHhccCCCC--------------------------ChhHHHHHHHHHhhcCChhHHHHHHHHh
Q 036068 10 TAIVSRYINRGQVDIARQCFDQMPER--------------------------DYVLWTAMIDGYLRVNRFREALTLFQEM 63 (178)
Q Consensus 10 ~~li~~~~~~~~~~~a~~~~~~m~~~--------------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m 63 (178)
-.+-.++...|++++|.+.|.+.-.. -..-|..++..+.+.+.++.+.++-+.-
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA 925 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 925 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44678889999999999999876420 1123778888999999998888776654
Q ss_pred HhCCC--CCc--HHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc------------
Q 036068 64 QTSNI--MGD--EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ------------ 127 (178)
Q Consensus 64 ~~~~~--~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~------------ 127 (178)
.+..- .++ ...|..+++++...+++++|...+-.+...... ......+|...|..|..+...
T Consensus 926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd 1003 (1139)
T 4fhn_B 926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVD 1003 (1139)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHH
T ss_pred HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHH
Confidence 43321 122 225788999999999999999998777655433 456777888888888777654
Q ss_pred ------------c-c-hhhHHHHHHHHHhcCChhHHH-HHHHHHHH
Q 036068 128 ------------K-D-KFSWTTMIVGLAISGNGDKAL-DMFSQMLR 158 (178)
Q Consensus 128 ------------~-~-~~~~~~li~~~~~~~~~~~a~-~~~~~m~~ 158 (178)
+ + +.-|..|=.-....|++.+|- -+|++..+
T Consensus 1004 ~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 1004 NLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 0 1 122455556666677776544 45555544
No 241
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.83 E-value=1.8 Score=28.37 Aligned_cols=95 Identities=16% Similarity=0.201 Sum_probs=63.3
Q ss_pred HHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhh
Q 036068 46 GYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK 125 (178)
Q Consensus 46 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 125 (178)
...+.|+++.|.++.+++ -+...|..+-+...+.|+++-|++.|....+ +..+.-.|.-.|+.++
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 345678999999887765 3678899999999999999999999876644 2333334444444443
Q ss_pred hc------cchhhHHHHHHHHHhcCChhHHHHHHHH
Q 036068 126 AQ------KDKFSWTTMIVGLAISGNGDKALDMFSQ 155 (178)
Q Consensus 126 a~------~~~~~~~~li~~~~~~~~~~~a~~~~~~ 155 (178)
.. ...--+|.....+...|+++++.++|.+
T Consensus 79 L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 79 LSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 32 1122355666666677777777777644
No 242
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=91.30 E-value=0.0044 Score=47.46 Aligned_cols=113 Identities=10% Similarity=0.092 Sum_probs=92.4
Q ss_pred ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID 115 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 115 (178)
....|..|-.+..+.+++.+|++.|-+ . -|...|..++.+..+.|.+++-..++....+.. .++.+=+.|+.
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk---A---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK---A---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC---C---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh---C---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 556788999999999999998875543 2 255678899999999999999999988777653 34556679999
Q ss_pred HHHhcCChhhhc-----cchhhHHHHHHHHHhcCChhHHHHHHHHH
Q 036068 116 MYCICADVEKAQ-----KDKFSWTTMIVGLAISGNGDKALDMFSQM 156 (178)
Q Consensus 116 ~~~~~~~~~~a~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m 156 (178)
+|+|.++..+.. ||..-...+-+-|...|.++.|.-+|..+
T Consensus 125 ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~i 170 (624)
T 3lvg_A 125 ALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 170 (624)
T ss_dssp HHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGS
T ss_pred HHHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhC
Confidence 999999999876 78888888999999999999888777654
No 243
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.59 E-value=1.9 Score=26.50 Aligned_cols=90 Identities=14% Similarity=0.033 Sum_probs=57.5
Q ss_pred CChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhh---HHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 51 NRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDL---GEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 51 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
.....+.+-|.+....|. ++..+--.+.-++.+...... +..+++.+.+.+. |. .
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~-p~-~------------------- 72 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-KE-E------------------- 72 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC-HH-H-------------------
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-cc-h-------------------
Confidence 345566666666655553 666666667777777766554 7778877776541 21 0
Q ss_pred cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 036068 128 KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165 (178)
Q Consensus 128 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 165 (178)
.....-.|..++.+.|++++|.++++.+++. .|+.
T Consensus 73 -~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~--eP~n 107 (126)
T 1nzn_A 73 -QRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--EPQN 107 (126)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred -HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCC
Confidence 1122334567778888888888888888874 5654
No 244
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=90.26 E-value=2.3 Score=26.87 Aligned_cols=122 Identities=12% Similarity=0.037 Sum_probs=64.4
Q ss_pred HHhcCChhHHHHHhccCCC-CChhHHHHHHHHHhhcCChhHHHHHHHHhHhC-CC----------------CCcHHHHHH
Q 036068 16 YINRGQVDIARQCFDQMPE-RDYVLWTAMIDGYLRVNRFREALTLFQEMQTS-NI----------------MGDEFTIVS 77 (178)
Q Consensus 16 ~~~~~~~~~a~~~~~~m~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~----------------~~~~~~~~~ 77 (178)
+.-.|.+++..++..+..+ .+..-||=+|.-....-+=+-.++.++.+-+. .+ .-+......
T Consensus 17 ~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~vd~ 96 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNK 96 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHHH
T ss_pred HHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHHHH
Confidence 4557888888888887764 35555555555444444444444444443221 00 112233445
Q ss_pred HHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 036068 78 ILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQML 157 (178)
Q Consensus 78 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 157 (178)
.++.....|+.++-.+++..+.. +.+|++...-.+- .+|.+.|+..++.+++.+.-
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia-----------------------~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIA-----------------------NALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHH-----------------------HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHH-----------------------HHHHHhcchhhHHHHHHHHH
Confidence 55566666666666666666433 2244444444444 45555555555556665555
Q ss_pred HcCC
Q 036068 158 RASI 161 (178)
Q Consensus 158 ~~g~ 161 (178)
+.|+
T Consensus 153 ~kG~ 156 (172)
T 1wy6_A 153 KKGE 156 (172)
T ss_dssp HTTC
T ss_pred Hhhh
Confidence 5554
No 245
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=89.76 E-value=2.3 Score=26.16 Aligned_cols=82 Identities=12% Similarity=0.066 Sum_probs=54.0
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcccc--chhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068 39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLR--ALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116 (178)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 116 (178)
..+.++.-|...|+.++|.++++++..-. .........+..++-+.+ ..+.+..++..+.+.|+-+.......+-..
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v 87 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 87 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence 35678999999999999999999986322 223445556666666653 346788888888887766554444444443
Q ss_pred HHhcC
Q 036068 117 YCICA 121 (178)
Q Consensus 117 ~~~~~ 121 (178)
+....
T Consensus 88 ~~~l~ 92 (129)
T 2nsz_A 88 YNEIP 92 (129)
T ss_dssp HHHHH
T ss_pred HhhCh
Confidence 33333
No 246
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=89.43 E-value=2.8 Score=26.65 Aligned_cols=92 Identities=12% Similarity=0.094 Sum_probs=58.1
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcccc--chhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068 39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLR--ALDLGEWIKTYIDKNKVKNDIFAGNALIDM 116 (178)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 116 (178)
..+.+|.-|...|+.++|.++++++..-. .....+...+..++-+.+ .-+.+..++..+.+.|+-+.......+-..
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~v 89 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 89 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence 45678999999999999999999985322 223445556666666542 356678888888887766555544444444
Q ss_pred HHhcCChhhhccchh
Q 036068 117 YCICADVEKAQKDKF 131 (178)
Q Consensus 117 ~~~~~~~~~a~~~~~ 131 (178)
+....+..-=.|+..
T Consensus 90 l~~ldDl~lDiP~A~ 104 (152)
T 2ion_A 90 YNEIPDINLDVPHSY 104 (152)
T ss_dssp HHHHHHHHHHSTTHH
T ss_pred HHhChHhccCccchH
Confidence 444433333224433
No 247
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=89.39 E-value=2.8 Score=26.50 Aligned_cols=67 Identities=6% Similarity=-0.027 Sum_probs=51.3
Q ss_pred HHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 60 FQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 60 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
-+.+.+.|++++..= ..++..+...+..-.|.++++.+.+.+...+..|.--.+..+...|.+....
T Consensus 15 ~~~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 81 (150)
T 2xig_A 15 RMSIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLE 81 (150)
T ss_dssp HHHHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEE
Confidence 345677888876543 4566666666778899999999999988888889888899999999887655
No 248
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.27 E-value=3.2 Score=31.14 Aligned_cols=94 Identities=7% Similarity=-0.045 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCC------CChhHHHHHHHHHhhcCChhHHHHHHHHhHh---CCCCCcHHHHHHH
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPE------RDYVLWTAMIDGYLRVNRFREALTLFQEMQT---SNIMGDEFTIVSI 78 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~l 78 (178)
++..+.+.|.+.|+++.|.+.+.+++. .-+..+-.+|+.+...+++..+...+++... .+-.|+...-...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 345678889999999999999999874 2455677888999999999999999988643 3333443321111
Q ss_pred --HHHhccccchhhHHHHHHHHHHh
Q 036068 79 --LTARANLRALDLGEWIKTYIDKN 101 (178)
Q Consensus 79 --l~~~~~~~~~~~a~~~~~~m~~~ 101 (178)
...+...+++..|.+.|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11234567888888888666543
No 249
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.25 E-value=5.6 Score=29.83 Aligned_cols=61 Identities=7% Similarity=-0.024 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHhHhC--CCCCcHHHHHHHHHHhccccchhhHHHHHHHHH
Q 036068 39 LWTAMIDGYLRVNRFREALTLFQEMQTS--NIMGDEFTIVSILTARANLRALDLGEWIKTYID 99 (178)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 99 (178)
+...+-..|.+.|++++|.++|.++... +...-...+..+++.+...+++..+...++...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3445667777778888888888777653 223345667777777777777777777776654
No 250
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=88.90 E-value=3 Score=26.17 Aligned_cols=66 Identities=9% Similarity=-0.005 Sum_probs=51.7
Q ss_pred HHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 61 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
+.+.+.|++++..= ..++..+...+..-.|.++++.+.+.+...+..|..--+..+...|.+....
T Consensus 11 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 76 (145)
T 2fe3_A 11 ETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELT 76 (145)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEe
Confidence 45677888777543 4556666666677889999999999988888889888899999999877654
No 251
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=88.65 E-value=1.6 Score=26.90 Aligned_cols=68 Identities=6% Similarity=-0.041 Sum_probs=50.6
Q ss_pred CChhHHHHHHHHHhhcCChhH---HHHHHHHhHhCCCCC--cHHHHHHHHHHhccccchhhHHHHHHHHHHhCc
Q 036068 35 RDYVLWTAMIDGYLRVNRFRE---ALTLFQEMQTSNIMG--DEFTIVSILTARANLRALDLGEWIKTYIDKNKV 103 (178)
Q Consensus 35 ~~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 103 (178)
++..+--.+-.++++++.... ++.++.++.+.+ .| .....-.+.-++.+.|++++|.+.++.+.+..+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 105 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 555665566677777776555 888999988765 23 334445667789999999999999999998764
No 252
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.46 E-value=1.6 Score=35.37 Aligned_cols=117 Identities=14% Similarity=0.008 Sum_probs=71.8
Q ss_pred HHHHHHHHhcCC-hhHHHHHhccCCCCCh--h--HHHHHHHHHhhcCC-hhHHHHHHHHhHhC------CCCCc-H----
Q 036068 10 TAIVSRYINRGQ-VDIARQCFDQMPERDY--V--LWTAMIDGYLRVNR-FREALTLFQEMQTS------NIMGD-E---- 72 (178)
Q Consensus 10 ~~li~~~~~~~~-~~~a~~~~~~m~~~~~--~--~~~~li~~~~~~~~-~~~a~~~~~~m~~~------~~~~~-~---- 72 (178)
..++..+...|+ ++.|.++|+++.+.+. . ....+|..+.+.++ --+|.+++.+..+. ...+. .
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 345555666666 5779999998875332 2 22233444333332 23355555554321 11111 1
Q ss_pred ------HHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 73 ------FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 73 ------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
.....=.+.|...|+++-|.++-++....- +.+-.+|..|...|.+.|+++.|+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~AL 391 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKAL 391 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHH
Confidence 112222344667899999999988877764 335789999999999999999998
No 253
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=88.14 E-value=2.8 Score=25.94 Aligned_cols=66 Identities=9% Similarity=-0.010 Sum_probs=51.1
Q ss_pred HHhHhCCCCCcHHHHHHHHHHhcccc-chhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 61 QEMQTSNIMGDEFTIVSILTARANLR-ALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 61 ~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
+.+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|..--+..+...|-+....
T Consensus 7 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 73 (136)
T 1mzb_A 7 SELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHN 73 (136)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEE
Confidence 34667888877544 45666666666 67889999999999988888888888899999988877654
No 254
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=88.13 E-value=3.5 Score=26.04 Aligned_cols=66 Identities=8% Similarity=-0.038 Sum_probs=52.5
Q ss_pred HHhHhCCCCCcHHHHHHHHHHhcccc-chhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 61 QEMQTSNIMGDEFTIVSILTARANLR-ALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 61 ~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
+.+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|..--+..+...|.+....
T Consensus 6 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 72 (150)
T 2w57_A 6 QALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHH 72 (150)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEE
Confidence 45677888877544 45667776666 67889999999999988888889888899999999887654
No 255
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=87.44 E-value=3.9 Score=29.33 Aligned_cols=25 Identities=16% Similarity=0.526 Sum_probs=12.2
Q ss_pred HHHHHHHhcCChhHHHHHhccCCCC
Q 036068 11 AIVSRYINRGQVDIARQCFDQMPER 35 (178)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~~ 35 (178)
.+|.-|...|+.++|...++++..|
T Consensus 171 ~lL~EY~~~~D~~EA~~ci~EL~~p 195 (307)
T 2zu6_B 171 MLLKEYLLSGDISEAEHCLKELEVP 195 (307)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHCCG
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCC
Confidence 3444444445555555555555443
No 256
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=87.43 E-value=3 Score=24.59 Aligned_cols=51 Identities=10% Similarity=-0.032 Sum_probs=24.6
Q ss_pred HHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhC
Q 036068 46 GYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK 102 (178)
Q Consensus 46 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 102 (178)
.+.+.|++++|..+.+.+. .||...|.++- -.+.|--++++.-+..+..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC
Confidence 4445556666654443332 45555553332 234455555555555555444
No 257
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=87.25 E-value=5 Score=26.87 Aligned_cols=72 Identities=14% Similarity=-0.004 Sum_probs=55.6
Q ss_pred CChhHHHHHHHHHhh--cCChhHHHHHHHHhHhCCCCCc-HHHHHHHHHHhccccchhhHHHHHHHHHHhCcccc
Q 036068 35 RDYVLWTAMIDGYLR--VNRFREALTLFQEMQTSNIMGD-EFTIVSILTARANLRALDLGEWIKTYIDKNKVKND 106 (178)
Q Consensus 35 ~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 106 (178)
.|..-....|..--. ++...++.++|..|.++||.-. +.-|......+-..|++++|.++|+.=++.+-.|-
T Consensus 75 ND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 75 NDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 366655555543333 4557799999999999887544 56788888889999999999999999999888884
No 258
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=86.74 E-value=5.8 Score=29.12 Aligned_cols=93 Identities=13% Similarity=0.100 Sum_probs=44.7
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcccc--chhhHHHHHHHHHHhCcccchHHHHHHHHHH
Q 036068 40 WTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLR--ALDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117 (178)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 117 (178)
.+.+|.-|...|+.++|.++++++..-... .......+..++-+.+ .-+.+.+++..+.+.|+-+.......+...+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl 298 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 298 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 455566666666666666666665432211 2233334444444332 2344555555555555554444444444444
Q ss_pred HhcCChhhhccchhhH
Q 036068 118 CICADVEKAQKDKFSW 133 (178)
Q Consensus 118 ~~~~~~~~a~~~~~~~ 133 (178)
....+..-=.|....+
T Consensus 299 ~~ldDl~lDiP~A~~~ 314 (358)
T 3eiq_C 299 NEIPDINLDVPHSYSV 314 (358)
T ss_dssp HHHHHHHHHCTTHHHH
T ss_pred HhccHhhcccccHHHH
Confidence 4444444434444433
No 259
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.67 E-value=3.4 Score=24.42 Aligned_cols=75 Identities=9% Similarity=-0.021 Sum_probs=37.9
Q ss_pred ChhHHHHHhccCCC-CChhHHHHHH--HHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHH
Q 036068 21 QVDIARQCFDQMPE-RDYVLWTAMI--DGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTY 97 (178)
Q Consensus 21 ~~~~a~~~~~~m~~-~~~~~~~~li--~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 97 (178)
..++|..+-+.+.. ++ .-.-.|| ..+.+.|++++|..+.+.+. .||...|.++- -.+.|--++++.-+..
T Consensus 22 ~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESRLNR 94 (116)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHH
Confidence 34555555554432 22 2222333 34556667777766555543 46666664442 2355555555555555
Q ss_pred HHHhC
Q 036068 98 IDKNK 102 (178)
Q Consensus 98 m~~~~ 102 (178)
+..+|
T Consensus 95 la~sg 99 (116)
T 2p58_C 95 LARSQ 99 (116)
T ss_dssp HTTCC
T ss_pred HHhCC
Confidence 55554
No 260
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=85.53 E-value=2.7 Score=26.40 Aligned_cols=65 Identities=12% Similarity=0.004 Sum_probs=49.6
Q ss_pred HHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 61 QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 61 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
+.+.+.|++++..= ..++..+.+.+ .-.|.++++.+.+.+...+..|.---+..+...|.+....
T Consensus 8 ~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~ 72 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAH 72 (145)
T ss_dssp HHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEE
Confidence 45667888877543 34555555555 6789999999999988888888888889999998877654
No 261
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=85.45 E-value=5.4 Score=25.56 Aligned_cols=73 Identities=10% Similarity=0.008 Sum_probs=56.2
Q ss_pred hHHHHHHHH-hHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHhcCChhhhc
Q 036068 54 REALTLFQE-MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKN--KVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 54 ~~a~~~~~~-m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
+.+.+-+.+ +.+.|++++.. =..++..+.+.+..-.|.++++.+.+. +...+..|.---++.+...|......
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~ 89 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSIS 89 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 444444444 56678887654 356778887877888999999999998 88888888888889999999887664
No 262
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=84.06 E-value=3.8 Score=22.64 Aligned_cols=65 Identities=6% Similarity=-0.058 Sum_probs=50.0
Q ss_pred HHhHhCCCCCcHHHHHHHHHHhcccc-chhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhh
Q 036068 61 QEMQTSNIMGDEFTIVSILTARANLR-ALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKA 126 (178)
Q Consensus 61 ~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 126 (178)
+.|.+.|+..+..- ..++..+.+.+ ..-.+.++++.+.+.+...+..|..-.+..+.+.|-+...
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~ 71 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRH 71 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEE
Confidence 44667888777655 55667777665 5677899999999888778888888889999988877643
No 263
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.62 E-value=3.9 Score=24.20 Aligned_cols=45 Identities=9% Similarity=0.042 Sum_probs=25.4
Q ss_pred cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHh
Q 036068 128 KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173 (178)
Q Consensus 128 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 173 (178)
|++....+.+++|-+.+++-.|.++++-.+.. ..+...+|-.+++
T Consensus 43 P~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 43 PEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 44445555666666666666777777666543 2233445555544
No 264
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=82.70 E-value=7.7 Score=25.15 Aligned_cols=148 Identities=12% Similarity=0.053 Sum_probs=96.4
Q ss_pred CcchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR 82 (178)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 82 (178)
.||..+-...+..+.+.+.-+....+.+.+..++...-...+.++.+.+.. ++...+.++... ++...-...+.++
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~d---~~~~vr~~a~~aL 100 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALKD---EDGWVRQSAAVAL 100 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 466666667788888888877777777777778888877888888888764 444455555443 5666666777777
Q ss_pred ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc--------cchhhHHHHHHHHHhcCChhHHHHHHH
Q 036068 83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFS 154 (178)
Q Consensus 83 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--------~~~~~~~~li~~~~~~~~~~~a~~~~~ 154 (178)
.+.++.+....+.+ +.+ .++..+-...+.++++.++.+... ++...-...+.++.+.|+ +++...+.
T Consensus 101 ~~~~~~~~~~~L~~-~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~ 175 (201)
T 3ltj_A 101 GQIGDERAVEPLIK-ALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAME 175 (201)
T ss_dssp HHHCCGGGHHHHHH-HTT---CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHH
T ss_pred HHhCcHHHHHHHHH-HHc---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHH
Confidence 77776544444433 332 456777777788888877643221 444555666667777765 44566666
Q ss_pred HHHHc
Q 036068 155 QMLRA 159 (178)
Q Consensus 155 ~m~~~ 159 (178)
++.+.
T Consensus 176 ~~l~d 180 (201)
T 3ltj_A 176 KLAET 180 (201)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 66653
No 265
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=81.77 E-value=4.8 Score=25.35 Aligned_cols=69 Identities=4% Similarity=-0.021 Sum_probs=46.8
Q ss_pred CChhHHHHHHHHHhhcC---ChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCc
Q 036068 35 RDYVLWTAMIDGYLRVN---RFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV 103 (178)
Q Consensus 35 ~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 103 (178)
++..+-=..-.+++++. +..+++.+++++.+.+-.-.....--+.-++.+.|++++|.++.+.+.+..+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 44444334445555555 4567888888887764322344555667788999999999999999988754
No 266
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=80.91 E-value=3.5 Score=29.94 Aligned_cols=74 Identities=16% Similarity=0.086 Sum_probs=46.2
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcccc-chhhHHHHHHHHHHhCcccchHHHHHHH
Q 036068 40 WTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLR-ALDLGEWIKTYIDKNKVKNDIFAGNALI 114 (178)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll 114 (178)
...++.-|...|+.++|..+++++..... ........+..++-+.. .-+.+..++..+.+.|+-+.......+-
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~-~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~ 88 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSL-LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLY 88 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGG-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCccc-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 56788999999999999999999854332 12334444444544322 3455667777777776654443333333
No 267
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=78.72 E-value=10 Score=24.11 Aligned_cols=68 Identities=7% Similarity=-0.109 Sum_probs=51.9
Q ss_pred ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc-HHHHHHHHHHhccccchhhHHHHHHHHHHhCcccc
Q 036068 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD-EFTIVSILTARANLRALDLGEWIKTYIDKNKVKND 106 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 106 (178)
|..-....|..--.. +++.++|..|.++||.-. +.-|......+-..|++++|.++|+.=++++-.|-
T Consensus 67 D~RyLklWl~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 67 DPRFISYCLKFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp CHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 666555555544333 348889999999887544 56778888888999999999999999998888883
No 268
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=78.05 E-value=6.1 Score=24.51 Aligned_cols=64 Identities=3% Similarity=-0.035 Sum_probs=46.9
Q ss_pred hHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 63 MQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 63 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
+.+.|++++.. =..++..+...+..-.|.++++.+.+.+...+..|.---+..+...|.+....
T Consensus 5 ~r~~g~r~T~q-R~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 68 (139)
T 3mwm_A 5 GPPVKGRATRQ-RAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLR 68 (139)
T ss_dssp -----CHHHHH-HHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred cCCCCCccCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 44566655433 35677777777778889999999999988888888888899999999877654
No 269
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=77.97 E-value=10 Score=23.58 Aligned_cols=68 Identities=4% Similarity=-0.019 Sum_probs=42.2
Q ss_pred ChhHHHHHHHHHhhcC---ChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCc
Q 036068 36 DYVLWTAMIDGYLRVN---RFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV 103 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 103 (178)
+..+-=..-.+++++. +..+++.+++++.+.+-.-....+--+.-++.+.|++++|.+..+.+.+..+
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 3333333334444444 3556778888877765222344555666778888888888888888877643
No 270
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=77.55 E-value=1.2 Score=23.34 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=23.2
Q ss_pred hhHHHHHHHHhHhCCCCCcHHHHHHHHHHh-cccc
Q 036068 53 FREALTLFQEMQTSNIMGDEFTIVSILTAR-ANLR 86 (178)
Q Consensus 53 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~ 86 (178)
.++|.+.|.+|++..-.++..||...++.+ ++..
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DP 36 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDP 36 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCC
Confidence 367777788876655455667888888877 5543
No 271
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=76.40 E-value=8.2 Score=24.20 Aligned_cols=45 Identities=9% Similarity=0.042 Sum_probs=33.1
Q ss_pred cchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHh
Q 036068 128 KDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173 (178)
Q Consensus 128 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 173 (178)
|++....+.+.+|-+.+|+-.|.++|+-.+.. ..+....|-.+++
T Consensus 86 PeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 86 PEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 67777788888888888888888888887763 3344566766665
No 272
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=76.12 E-value=16 Score=26.18 Aligned_cols=93 Identities=12% Similarity=0.098 Sum_probs=59.6
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccc--hhhHHHHHHHHHHhCcccchHHHHHHHHH
Q 036068 39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRA--LDLGEWIKTYIDKNKVKNDIFAGNALIDM 116 (178)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 116 (178)
..+.++.-|...|+.++|.++++++..-... .......+..++-+.++ .+.+.+++..+.+.|+-+.......+-..
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~v 246 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERI 246 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999998643222 23455566666665432 46678888888888876655555544444
Q ss_pred HHhcCChhhhccchhh
Q 036068 117 YCICADVEKAQKDKFS 132 (178)
Q Consensus 117 ~~~~~~~~~a~~~~~~ 132 (178)
+....+..-=.|+...
T Consensus 247 l~~l~Dl~lDiP~A~~ 262 (307)
T 2zu6_B 247 YNEIPDINLDVPHSYS 262 (307)
T ss_dssp HHHHHHHHHHCTTHHH
T ss_pred HHhccHhhcccccHHH
Confidence 4444444332344333
No 273
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=76.08 E-value=16 Score=24.84 Aligned_cols=83 Identities=7% Similarity=0.025 Sum_probs=52.9
Q ss_pred hhHHHHHHHHhHhCCCCCcHH--HHH-----HHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhh
Q 036068 53 FREALTLFQEMQTSNIMGDEF--TIV-----SILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK 125 (178)
Q Consensus 53 ~~~a~~~~~~m~~~~~~~~~~--~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 125 (178)
.+.|+.+|+.+.+.-..+... ... ..+-.|.+.|.+++|.+++++.... .++..-...-+....+..+...
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~--~~s~~kLr~kL~~II~~Kd~~H 165 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK--DPTTQKLRNDLLNIIREKNLAH 165 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--CGGGHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC--CCCchHHHHHHHHHHhccCccc
Confidence 588999999998764332321 222 2344688999999999999988765 3444445555555666655555
Q ss_pred hccchhhHHHHH
Q 036068 126 AQKDKFSWTTMI 137 (178)
Q Consensus 126 a~~~~~~~~~li 137 (178)
-.--.++|+.++
T Consensus 166 ~~lqnFSy~~~~ 177 (235)
T 3bu8_A 166 PVIQNFSYETFQ 177 (235)
T ss_dssp HHHHTCCHHHHH
T ss_pred HHHHhccHHHHH
Confidence 443445555554
No 274
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=75.58 E-value=10 Score=26.70 Aligned_cols=115 Identities=10% Similarity=-0.033 Sum_probs=79.1
Q ss_pred HHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcc--cchHHHHHHHHHHHhcC
Q 036068 44 IDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVK--NDIFAGNALIDMYCICA 121 (178)
Q Consensus 44 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~ 121 (178)
+....+.|+.+++++....-.+.. +-|...=..+++.+|-.|++++|.+=++...+.... +...+|..+|.+=....
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~ 82 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARK 82 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHH
Confidence 345678899999999888877765 557777778999999999999999999988887543 33345666665433322
Q ss_pred Chhhhc--c-----chhhHHHHHHHHH--hcCChhHHHHHHHHHHHc
Q 036068 122 DVEKAQ--K-----DKFSWTTMIVGLA--ISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 122 ~~~~a~--~-----~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~ 159 (178)
++=... | ...-...++.+.. ..|+.++|.++-.+..+.
T Consensus 83 ~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 83 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 222222 1 2223345555554 359999999999988764
No 275
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=75.48 E-value=14 Score=23.92 Aligned_cols=117 Identities=6% Similarity=-0.129 Sum_probs=62.8
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHhHhC-CCCCc-------HHHHHHHHHHhccccchhhHHHHHHHHHHhC--cccchHH
Q 036068 40 WTAMIDGYLRVNRFREALTLFQEMQTS-NIMGD-------EFTIVSILTARANLRALDLGEWIKTYIDKNK--VKNDIFA 109 (178)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~-------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~ 109 (178)
+-.-+..+...|.++.|.-+.+.+... +..|+ ..++..+.+++...+++.+|...|++..+.. +.-...+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 334456667777888887777665432 11233 2356667788888899999999888754322 1111111
Q ss_pred HHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 036068 110 GNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQML 157 (178)
Q Consensus 110 ~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 157 (178)
...+-..-...+..+ ...+...--.+-.+|.+.+++++|+.+++.+.
T Consensus 103 ~~~~~~~ss~p~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 103 RPSTGNSASTPQSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp --------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred cccccccCCCccccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 111100000000001 11233343447788889999999999877653
No 276
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=75.14 E-value=6.3 Score=24.12 Aligned_cols=51 Identities=8% Similarity=0.022 Sum_probs=40.7
Q ss_pred HHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 77 SILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 77 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
.++..+...+..-.|.++++.+.+.+...+..|.--.+..+...|-+....
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~ 65 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLH 65 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEE
Confidence 456666666677789999999998888888888888888899888877655
No 277
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=74.78 E-value=23 Score=26.04 Aligned_cols=62 Identities=15% Similarity=0.341 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCChhHHHHHhccCCCCC---hhHHHHHHHHHhhcCC--hhHHHHHHHHhHhCCCCCc
Q 036068 10 TAIVSRYINRGQVDIARQCFDQMPERD---YVLWTAMIDGYLRVNR--FREALTLFQEMQTSNIMGD 71 (178)
Q Consensus 10 ~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~~ 71 (178)
+.+|.-|...|+.++|.+.++++..|. ..+...+..++-+.++ -+...+++..+...|+.+.
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 445555555666666666666655542 1223333333333222 2334555555555554433
No 278
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=74.59 E-value=23 Score=26.03 Aligned_cols=92 Identities=15% Similarity=0.151 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCCCC----hhHHHHHHHHHhhcCC-hhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPERD----YVLWTAMIDGYLRVNR-FREALTLFQEMQTSNIMGDEFTIVSILTAR 82 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 82 (178)
.-..+|.-|...|++++|.+.++++..|+ ...+..+..++-+... -+.+-.++..+...|+.+.......+...+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~ll 93 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVL 93 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999999885 2234444444443321 255677788888878766666666666655
Q ss_pred ccccc----hhhHHHHHHHHH
Q 036068 83 ANLRA----LDLGEWIKTYID 99 (178)
Q Consensus 83 ~~~~~----~~~a~~~~~~m~ 99 (178)
....+ ...|..++..+.
T Consensus 94 e~l~Dl~iDiP~a~~~la~f~ 114 (364)
T 3l6a_A 94 DQCPKLEVDIPLVKSYLAQFA 114 (364)
T ss_dssp HTHHHHHHHCTTHHHHHHHHH
T ss_pred hhChHhccccccHHHHHHHHH
Confidence 55554 334555554443
No 279
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=73.46 E-value=4.3 Score=23.55 Aligned_cols=38 Identities=13% Similarity=0.136 Sum_probs=24.0
Q ss_pred CChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHH
Q 036068 51 NRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGE 92 (178)
Q Consensus 51 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 92 (178)
...++|.++++.+..+| | ..|..++.++...++...|.
T Consensus 51 t~~~~ar~Lld~L~~rG--~--~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRG--S--QALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSC--T--THHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcC--h--HHHHHHHHHHHHcCcHHHHH
Confidence 35677777777777765 2 35666777776656554443
No 280
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=73.32 E-value=26 Score=26.08 Aligned_cols=119 Identities=9% Similarity=0.025 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCC--------CChhHHHHHHHHHhhcCC-hhHHHHHHHHhHhCCCCCcHHHH---
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPE--------RDYVLWTAMIDGYLRVNR-FREALTLFQEMQTSNIMGDEFTI--- 75 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~--------~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~--- 75 (178)
....|...|.+.|+.++..+++...+. +..-....|+..+....+ .+.-.++..+..+-.. -...+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 345678888999999998888887763 244445555665555332 2222222222211000 000111
Q ss_pred ---HHHHHHhccccchhhHHHHHHHHHHhCcc-----cchHHHHHHHHHHHhcCChhhhc
Q 036068 76 ---VSILTARANLRALDLGEWIKTYIDKNKVK-----NDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 76 ---~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
.-+...|...|++.+|.+++..+.+.--. .-..++-.-+..|...+++.++.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k 159 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKAR 159 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHH
Confidence 14555566666666666666555542111 11333444455555666655554
No 281
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=73.11 E-value=16 Score=23.50 Aligned_cols=27 Identities=15% Similarity=0.348 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCCC
Q 036068 9 WTAIVSRYINRGQVDIARQCFDQMPER 35 (178)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~~ 35 (178)
-..+|+-|...|+.++|..-++++..|
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~p 39 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNLG 39 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCc
Confidence 345666676777777777777777655
No 282
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=72.95 E-value=41 Score=28.20 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=41.6
Q ss_pred HHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHh
Q 036068 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEM 63 (178)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 63 (178)
++..|...|.++-+.++....+.....+| .+-.+|...|++++|.++|++.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~t~~~~y-v~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNSDPIAVY-LKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCSSHHHHH-HHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCCChHHHH-HHHHHHHHcCCHHHHHHHHHHH
Confidence 67888889999999998888887434444 5677888999999999999885
No 283
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=72.37 E-value=12 Score=23.99 Aligned_cols=144 Identities=6% Similarity=0.004 Sum_probs=70.1
Q ss_pred HHHHHhcCChhHHHHHhccCC-C---CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHH---HHHHHHHHhccc
Q 036068 13 VSRYINRGQVDIARQCFDQMP-E---RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEF---TIVSILTARANL 85 (178)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~-~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~ 85 (178)
+...+..|+.+.+..++..-. . .|..-++.|.. .++.|+.+-+ +.+.+.|..++.. ..+ .+...+..
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t-~l~~A~~~ 82 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNI-AVHNNDIEIA----KALIDRGADINLQNSISDS-PYLYAGAQ 82 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHH-HHHHTCHHHH----HHHHHTTCCTTCCCTTSCC-HHHHHHHT
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHH-HHHcCCHHHH----HHHHHcCCCCCCCCCCCCC-HHHHHHHc
Confidence 445567899999999998765 2 23333334433 4556665544 4444555544432 222 23334445
Q ss_pred cchhhHHHHHHHHHHhCcccc--------hHHH------HHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHH
Q 036068 86 RALDLGEWIKTYIDKNKVKND--------IFAG------NALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALD 151 (178)
Q Consensus 86 ~~~~~a~~~~~~m~~~~~~~~--------~~~~------~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~ 151 (178)
|+.+-+..+++. .+..++ +..+ ..++..+...|..+--.+|..-++.|..+.........-.+
T Consensus 83 ~~~~~~~~Ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~ 159 (201)
T 3hra_A 83 GRTEILAYMLKH---ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQD 159 (201)
T ss_dssp TCHHHHHHHHHH---SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHH
T ss_pred CCHHHHHHHHhc---cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHH
Confidence 665554444422 221111 1111 11233333333222112344445555555544433444567
Q ss_pred HHHHHHHcCCCCCh
Q 036068 152 MFSQMLRASIKPDE 165 (178)
Q Consensus 152 ~~~~m~~~g~~p~~ 165 (178)
+.+.+.+.|..|+.
T Consensus 160 ~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 160 IVKLLMENGADQSI 173 (201)
T ss_dssp HHHHHHHTTCCTTC
T ss_pred HHHHHHHCCCCCCc
Confidence 77778888877654
No 284
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=71.43 E-value=18 Score=23.38 Aligned_cols=93 Identities=11% Similarity=-0.054 Sum_probs=54.3
Q ss_pred HHHHhcCChhHHHHHhccCCCC-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHH---HHHHHHHhcc-ccch
Q 036068 14 SRYINRGQVDIARQCFDQMPER-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFT---IVSILTARAN-LRAL 88 (178)
Q Consensus 14 ~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~ll~~~~~-~~~~ 88 (178)
...++.|+++....++..-... +...-.+.+...+..|+.+.-.++.+.+.+.|..++... .+.|.-++.. ..+.
T Consensus 11 ~~Aa~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~ 90 (186)
T 3t8k_A 11 SAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDI 90 (186)
T ss_dssp HHHHHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCH
T ss_pred HHHHHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcch
Confidence 3446789999988888754321 211123455555677777766777788888887766532 2233333221 2233
Q ss_pred hhHHHHHHHHHHhCcccc
Q 036068 89 DLGEWIKTYIDKNKVKND 106 (178)
Q Consensus 89 ~~a~~~~~~m~~~~~~~~ 106 (178)
....++.+.+.+.|..++
T Consensus 91 ~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 91 TGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHHHHHHHHTTCCSS
T ss_pred hhHHHHHHHHHHCCCCCC
Confidence 445667777777775543
No 285
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=71.27 E-value=18 Score=23.48 Aligned_cols=148 Identities=12% Similarity=0.053 Sum_probs=87.6
Q ss_pred CcchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR 82 (178)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 82 (178)
.||..+-...+..+.+.|..+....+.+.+.++|...-...+.++.+.++. .+...+.++... ++...-...+.++
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~~---~~~~vr~~a~~aL 105 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALKD---EDGWVRQSAAVAL 105 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 345555556677777777766666666666677777777777777777763 344444444432 4555555666677
Q ss_pred ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc--------cchhhHHHHHHHHHhcCChhHHHHHHH
Q 036068 83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFS 154 (178)
Q Consensus 83 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--------~~~~~~~~li~~~~~~~~~~~a~~~~~ 154 (178)
.+.++.+....+.+ +.+ .++..+-...+.++.+.|..+... ++...-...+.++.+.+. .++...+.
T Consensus 106 ~~~~~~~~~~~L~~-~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~ 180 (211)
T 3ltm_A 106 GQIGDERAVEPLIK-ALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAME 180 (211)
T ss_dssp HHHCCGGGHHHHHH-HTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHH
T ss_pred HHhCcHHHHHHHHH-HHh---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHH
Confidence 66666443333333 332 456667777777777777643221 344455556666666665 44555555
Q ss_pred HHHHc
Q 036068 155 QMLRA 159 (178)
Q Consensus 155 ~m~~~ 159 (178)
++.+.
T Consensus 181 ~~l~d 185 (211)
T 3ltm_A 181 KLAET 185 (211)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 55543
No 286
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.27 E-value=31 Score=26.02 Aligned_cols=25 Identities=16% Similarity=0.072 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhc
Q 036068 6 VISWTAIVSRYINRGQVDIARQCFD 30 (178)
Q Consensus 6 ~~~~~~li~~~~~~~~~~~a~~~~~ 30 (178)
......++..|.+.|+|+...+.+.
T Consensus 56 ~r~l~~iv~l~~~~~~~~~l~e~i~ 80 (445)
T 4b4t_P 56 KEVLAKIVDLLASRNKWDDLNEQLT 80 (445)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHH
Confidence 4456677788888888877654444
No 287
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=70.19 E-value=23 Score=24.11 Aligned_cols=68 Identities=10% Similarity=-0.027 Sum_probs=51.7
Q ss_pred ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc-HHHHHHHHHHhccccchhhHHHHHHHHHHhCcccc
Q 036068 36 DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD-EFTIVSILTARANLRALDLGEWIKTYIDKNKVKND 106 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 106 (178)
|..-....|..--. .+.+.++|..|.++||.-. +.-|......+-..|++++|..+|+.=++++-.|-
T Consensus 116 D~RyLklWl~Ya~~---~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 116 DVRYLRIWMQYVNY---IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp CHHHHHHHHHHHTT---CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CHHHHHHHHHHHHc---cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 55555555544332 3577789999999887544 56788888888999999999999999998888873
No 288
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=69.97 E-value=19 Score=23.17 Aligned_cols=70 Identities=10% Similarity=-0.062 Sum_probs=53.4
Q ss_pred CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc-HHHHHHHHHHhccccchhhHHHHHHHHHHhCcccch
Q 036068 35 RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD-EFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDI 107 (178)
Q Consensus 35 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 107 (178)
.|..-..+.|..--.+ +.+.++|..|.++||.-. +.-|......+-..|++.+|.++|..=++.+-.|-.
T Consensus 61 nD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 61 SDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp TCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred cCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 3666666666433333 447788999999887544 567778888888999999999999999999888844
No 289
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=69.93 E-value=28 Score=25.01 Aligned_cols=80 Identities=14% Similarity=0.082 Sum_probs=43.3
Q ss_pred hhcCChhHHHHH----HHHhHhCCCCCcHHHHHHHHHHhccccchh-hHHHHHHHHH----HhCc--ccchHHHHHHHHH
Q 036068 48 LRVNRFREALTL----FQEMQTSNIMGDEFTIVSILTARANLRALD-LGEWIKTYID----KNKV--KNDIFAGNALIDM 116 (178)
Q Consensus 48 ~~~~~~~~a~~~----~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~m~----~~~~--~~~~~~~~~ll~~ 116 (178)
.+.|+...|-++ .+-..+.+++++.....-++..+.....-+ .-.++++.++ +.|- .-++.....+-..
T Consensus 64 l~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~ 143 (312)
T 2wpv_A 64 LKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSK 143 (312)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHH
T ss_pred HHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Confidence 344554444433 333445567777777777776665532211 2233333333 3321 2356667777777
Q ss_pred HHhcCChhhhc
Q 036068 117 YCICADVEKAQ 127 (178)
Q Consensus 117 ~~~~~~~~~a~ 127 (178)
|.+.|++.+|.
T Consensus 144 ~~~e~~~~~A~ 154 (312)
T 2wpv_A 144 LLEGDFVYEAE 154 (312)
T ss_dssp HHHTTCHHHHH
T ss_pred HhhcCCHHHHH
Confidence 77777777776
No 290
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=69.52 E-value=26 Score=24.61 Aligned_cols=103 Identities=11% Similarity=0.092 Sum_probs=65.2
Q ss_pred HHHHHhcCChhHHHHHhccCCC--C-ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHH----HHHHHHHHhccc
Q 036068 13 VSRYINRGQVDIARQCFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEF----TIVSILTARANL 85 (178)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~ 85 (178)
+....+.|+++++++....-.+ | |...-..|+..+|-.|+++.|..-++...+. .|+.. .|..+|+
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~----- 76 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVK----- 76 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH-----
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHH-----
Confidence 3456788999998887775432 3 8888888999999999999999888887665 34433 4444443
Q ss_pred cchhhHHHHHHHHHHhCccc-----chHHHHHHHHHHHh--cCChhhhc
Q 036068 86 RALDLGEWIKTYIDKNKVKN-----DIFAGNALIDMYCI--CADVEKAQ 127 (178)
Q Consensus 86 ~~~~~a~~~~~~m~~~~~~~-----~~~~~~~ll~~~~~--~~~~~~a~ 127 (178)
|+..-......+-.| ...-...++.+... .|+.+.|.
T Consensus 77 -----aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~ 120 (273)
T 1zbp_A 77 -----AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVS 120 (273)
T ss_dssp -----HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred -----HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHH
Confidence 334444444443322 22334455555443 47766653
No 291
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=69.26 E-value=23 Score=23.72 Aligned_cols=67 Identities=7% Similarity=-0.066 Sum_probs=39.4
Q ss_pred HHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHH
Q 036068 74 TIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMF 153 (178)
Q Consensus 74 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~ 153 (178)
.|...++.| ..+...+...+|..|...|+-..... -|......+...|++++|.++|
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~Al----------------------fYe~wA~~lE~~g~~~~A~~Vy 138 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSL----------------------FYEEFSKLLENAQFFLEAKVLL 138 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHH----------------------HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHH----------------------HHHHHHHHHHHcCCHHHHHHHH
Confidence 333344433 24446689999999999987654332 2344444445556666666666
Q ss_pred HHHHHcCCCC
Q 036068 154 SQMLRASIKP 163 (178)
Q Consensus 154 ~~m~~~g~~p 163 (178)
+.-++.+-.|
T Consensus 139 ~~GI~~~A~P 148 (202)
T 3esl_A 139 ELGAENNCRP 148 (202)
T ss_dssp HHHHHTTCBS
T ss_pred HHHHHcCCcc
Confidence 6655555544
No 292
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=68.51 E-value=14 Score=25.34 Aligned_cols=81 Identities=11% Similarity=0.001 Sum_probs=52.6
Q ss_pred HHHHHHhcCChhHHHHHhccCCC-----C-----ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068 12 IVSRYINRGQVDIARQCFDQMPE-----R-----DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81 (178)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~-----~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 81 (178)
-|+.+....++++|.+++++.++ + +...-...+..-.....-.-+..+.+++ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 47788899999999999987653 1 1122223333333333344455555555 33 3456666777888
Q ss_pred hccccchhhHHHHH
Q 036068 82 RANLRALDLGEWIK 95 (178)
Q Consensus 82 ~~~~~~~~~a~~~~ 95 (178)
+.+.|+.++|.++|
T Consensus 101 L~rLg~~~~A~~lf 114 (235)
T 2d2s_A 101 MIKLGLPEQALDLF 114 (235)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHCCChhHHHHHH
Confidence 99999999998888
No 293
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=67.59 E-value=22 Score=22.97 Aligned_cols=93 Identities=11% Similarity=0.019 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHhccCCC-----CCh-------hHHHHHHHHHhhcCChhHHHHHHHHhHhC--CC----
Q 036068 7 ISWTAIVSRYINRGQVDIARQCFDQMPE-----RDY-------VLWTAMIDGYLRVNRFREALTLFQEMQTS--NI---- 68 (178)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~---- 68 (178)
..+-.-++.+...|.++.|..+.+.+.. ++. .+...+-.++...+++..|...|++.+.. .+
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3455568888999999999988887542 332 25566778999999999999999984321 00
Q ss_pred ------------------CCcHHHHHHHHHHhccccchhhHHHHHHHHH
Q 036068 69 ------------------MGDEFTIVSILTARANLRALDLGEWIKTYID 99 (178)
Q Consensus 69 ------------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 99 (178)
..+...---+-.|+.+.+++++|..+++.+-
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 0111222236667778888888887776543
No 294
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=64.55 E-value=25 Score=22.54 Aligned_cols=94 Identities=6% Similarity=0.075 Sum_probs=52.9
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccc-hhhHHHHHHHHHHhCcccchHHHHHHHHHH
Q 036068 39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRA-LDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117 (178)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 117 (178)
....+|.-|...++.++|...++++......| ...-..+-.++-+... -+.+-.++..+.. ++-+.......+...+
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~-~~V~~~I~~aldrk~~ere~~s~LL~~L~~-~~ls~~~i~~Gf~~ll 89 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKS-GVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLL 89 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCSGGGG-HHHHHHHHHHHTSCHHHHHHHHHHHHHHBT-TTBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCcccHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 35678899999999999999999986543222 2222333334433322 3345667777644 5544444544444444
Q ss_pred HhcCChhhhccchhhHH
Q 036068 118 CICADVEKAQKDKFSWT 134 (178)
Q Consensus 118 ~~~~~~~~a~~~~~~~~ 134 (178)
....+..-=.|....+-
T Consensus 90 e~ldDl~iDiP~a~~~l 106 (165)
T 2rg8_A 90 KDLPELALDTPRAPQLV 106 (165)
T ss_dssp HHHHHHHHHCTTHHHHH
T ss_pred HhChhhcccccchHHHH
Confidence 44444443345444443
No 295
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.70 E-value=47 Score=25.01 Aligned_cols=106 Identities=13% Similarity=0.014 Sum_probs=67.8
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHhHhC--CCCCc---HHHHHHHHHHhccccchhhHHHHHHHHHH----hCcccc--hH
Q 036068 40 WTAMIDGYLRVNRFREALTLFQEMQTS--NIMGD---EFTIVSILTARANLRALDLGEWIKTYIDK----NKVKND--IF 108 (178)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~~~--~~ 108 (178)
...|...|...|++.+|.+++.++... |.... ...+...++.|...+++.+|..++..... ....|. ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 456778889999999999999998642 22212 35777888899999999999999887642 122222 23
Q ss_pred HHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhH
Q 036068 109 AGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDK 148 (178)
Q Consensus 109 ~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~ 148 (178)
.+...+..+...+++.+|. ..|..++..+...++...
T Consensus 220 ~~~~~~~~~~~e~~y~~a~---~~y~e~~~~~~~~~d~~~ 256 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVA---QYLQEIYQTDAIKSDEAK 256 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHH---HHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHhhhHHHHH---HHHHHHHhcccccCCHHH
Confidence 3445555666677777764 223344444444444433
No 296
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=62.44 E-value=28 Score=22.30 Aligned_cols=112 Identities=10% Similarity=0.053 Sum_probs=65.5
Q ss_pred CChhHHHHHHHHHhhcCCh------hHHHHHHHHhHhCCCCCcHH-HHHHHHHHh------ccccchhhHHHHHHHHHHh
Q 036068 35 RDYVLWTAMIDGYLRVNRF------REALTLFQEMQTSNIMGDEF-TIVSILTAR------ANLRALDLGEWIKTYIDKN 101 (178)
Q Consensus 35 ~~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~------~~~~~~~~a~~~~~~m~~~ 101 (178)
.|..+|=..+....+.|+. ++..++|++.... ++|+.. .|...+..+ ...++.++|.++|+.+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4778888888888888988 8888888876653 455421 111111111 2225666666666666554
Q ss_pred CcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHH
Q 036068 102 KVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVL 172 (178)
Q Consensus 102 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 172 (178)
+ ..+ ...|-....--.++|++.+|.+++.+.+..+-+| .....+.|
T Consensus 90 h------------------KkF------AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~ 135 (161)
T 4h7y_A 90 C------------------KKF------AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIAL 135 (161)
T ss_dssp C------------------TTB------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHH
T ss_pred h------------------HHH------HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHH
Confidence 1 111 1223334444467888888888888888755433 34444443
No 297
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=62.18 E-value=21 Score=20.82 Aligned_cols=58 Identities=17% Similarity=0.085 Sum_probs=39.2
Q ss_pred hHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHH-----HHhCcccchHHHHHH
Q 036068 54 REALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYI-----DKNKVKNDIFAGNAL 113 (178)
Q Consensus 54 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m-----~~~~~~~~~~~~~~l 113 (178)
-.|.++.+++..-|+.|+..+...++..|...+- + +.++..+. ...|..|+....+.+
T Consensus 26 Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 26 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 3466777888888999999888888888876553 2 33333222 345778877776654
No 298
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=61.47 E-value=45 Score=24.45 Aligned_cols=92 Identities=13% Similarity=0.129 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccc-hhhHHHHHHHHHHhCcccchHHHHHHHHHH
Q 036068 39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRA-LDLGEWIKTYIDKNKVKNDIFAGNALIDMY 117 (178)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 117 (178)
.-..+|.-|...|+.++|.++++++..-+.-.....+..+..++-+... -+.+-.++..+.+.++-+.......+...+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~ll 93 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVL 93 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999998542101113444455555544322 345667777777777655555555555544
Q ss_pred HhcCChhhhccch
Q 036068 118 CICADVEKAQKDK 130 (178)
Q Consensus 118 ~~~~~~~~a~~~~ 130 (178)
....+..-=.|..
T Consensus 94 e~l~Dl~iDiP~a 106 (364)
T 3l6a_A 94 DQCPKLEVDIPLV 106 (364)
T ss_dssp HTHHHHHHHCTTH
T ss_pred hhChHhccccccH
Confidence 4444443333433
No 299
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=60.77 E-value=27 Score=21.64 Aligned_cols=65 Identities=9% Similarity=-0.031 Sum_probs=41.9
Q ss_pred HHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccch
Q 036068 24 IARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88 (178)
Q Consensus 24 ~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 88 (178)
.+.+.+++-.-+....-..++..+...+..-.|.++++.+.+.+...+..|.---|+.+.+.|-.
T Consensus 8 ~~~~~l~~~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 8 EALETLKETGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 34444444333444445566666666666677888999998877666777776667777666544
No 300
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=60.46 E-value=44 Score=23.97 Aligned_cols=113 Identities=12% Similarity=0.041 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHH----hHhCCCCCcH-HHHHHHHHHhccccchhh---HHHHHHHHHHhC-cccc-hH
Q 036068 39 LWTAMIDGYLRVNRFREALTLFQE----MQTSNIMGDE-FTIVSILTARANLRALDL---GEWIKTYIDKNK-VKND-IF 108 (178)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~----m~~~~~~~~~-~~~~~ll~~~~~~~~~~~---a~~~~~~m~~~~-~~~~-~~ 108 (178)
.|.++..-|.+.+++++|.+++.. +.+.|-.... .-...++..|.+.+..-. ..++.+.+.... .+|. ..
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~ 114 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKD 114 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHH
Confidence 466788888888888888888755 3334321111 112234566655543211 111111111111 0111 12
Q ss_pred HHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHH
Q 036068 109 AGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMF 153 (178)
Q Consensus 109 ~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~ 153 (178)
..+..+.=..+.|.... -|+.....+-..|.+.|++.+|..-|
T Consensus 115 fi~~ai~WS~~~g~~~~--Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 115 VITGMNNWSIKFSEYKF--GDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHHHHHHTSSCTT--CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCC--CCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 22223332333333221 25556667778888888888887644
No 301
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=60.37 E-value=24 Score=20.86 Aligned_cols=77 Identities=13% Similarity=0.064 Sum_probs=48.4
Q ss_pred hhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc--------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 88 LDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 88 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
-++|..|-+.+...+. ...+--+-+..+...|++++|. ||...|-+|-. .+.|..+++..-+.++..+
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4566666666666543 2233333355677778888776 77777766643 4678888888777777765
Q ss_pred CCCCChhHHH
Q 036068 160 SIKPDEVAYV 169 (178)
Q Consensus 160 g~~p~~~t~~ 169 (178)
| .|....|.
T Consensus 98 g-~p~~q~Fa 106 (115)
T 2uwj_G 98 S-DPALADFA 106 (115)
T ss_dssp S-SHHHHHHH
T ss_pred C-CHHHHHHH
Confidence 5 35555444
No 302
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=60.14 E-value=24 Score=20.87 Aligned_cols=77 Identities=13% Similarity=0.139 Sum_probs=41.2
Q ss_pred hhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc--------cchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 88 LDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ--------KDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 88 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
-++|..|-+.+...+. ...+--+-+..+...|++++|. ||...|-+|-. .+.|..+++..-+.++..+
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 3455555555555443 2222223344556666666665 66666655543 4567777777666666655
Q ss_pred CCCCChhHHH
Q 036068 160 SIKPDEVAYV 169 (178)
Q Consensus 160 g~~p~~~t~~ 169 (178)
| .|....|.
T Consensus 99 g-~p~~q~Fa 107 (116)
T 2p58_C 99 Q-DPRIQTFV 107 (116)
T ss_dssp C-CHHHHHHH
T ss_pred C-CHHHHHHH
Confidence 4 34444443
No 303
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=60.01 E-value=51 Score=24.53 Aligned_cols=87 Identities=11% Similarity=-0.010 Sum_probs=49.7
Q ss_pred HHHHHHHhcCChhHHHHHhccCCC----C-----ChhHHHHHHHHHhhcCChhHHHHHHHHhHhC--CCCCcHHHHHHHH
Q 036068 11 AIVSRYINRGQVDIARQCFDQMPE----R-----DYVLWTAMIDGYLRVNRFREALTLFQEMQTS--NIMGDEFTIVSIL 79 (178)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~----~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll 79 (178)
.+...|...|++.+|.+++.++.+ . -...+-.-+..|...+++.++...+.+-... .+.+++.. ...+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i-~a~i 182 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV-QGAL 182 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH-HHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH-HHHH
Confidence 466777777888777777766643 1 2224555566677777777777777665432 22222222 1222
Q ss_pred HH-----hc-cccchhhHHHHHHHH
Q 036068 80 TA-----RA-NLRALDLGEWIKTYI 98 (178)
Q Consensus 80 ~~-----~~-~~~~~~~a~~~~~~m 98 (178)
+. +. ..+++..|...|-+.
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHH
Confidence 22 23 566777777666444
No 304
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=56.57 E-value=54 Score=23.82 Aligned_cols=93 Identities=10% Similarity=-0.041 Sum_probs=55.4
Q ss_pred HHhHhCCCCCcHHHHHHHHHHhccccchh-hHHHHHHHHH----HhC--cccchHHHHHHHHHHHhcCChhhhc------
Q 036068 61 QEMQTSNIMGDEFTIVSILTARANLRALD-LGEWIKTYID----KNK--VKNDIFAGNALIDMYCICADVEKAQ------ 127 (178)
Q Consensus 61 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~m~----~~~--~~~~~~~~~~ll~~~~~~~~~~~a~------ 127 (178)
+-..+.++++|.....-++..+.....-+ .-..+.+.++ +.| ..-++.....+-..|.+.+++.+|.
T Consensus 83 evy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg 162 (336)
T 3lpz_A 83 DTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLG 162 (336)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhc
Confidence 44455678888888888888776655321 1233334333 334 2335677778888899999999997
Q ss_pred cc--hhhHHHHHHHHHhcCChhHHHHHH
Q 036068 128 KD--KFSWTTMIVGLAISGNGDKALDMF 153 (178)
Q Consensus 128 ~~--~~~~~~li~~~~~~~~~~~a~~~~ 153 (178)
.+ ...|-.++.-+...+...++--++
T Consensus 163 ~~~s~~~~a~mL~ew~~~~~~~e~dlfi 190 (336)
T 3lpz_A 163 TKESPEVLARMEYEWYKQDESHTAPLYC 190 (336)
T ss_dssp CTTHHHHHHHHHHHHHHTSCGGGHHHHH
T ss_pred CCchHHHHHHHHHHHHHhcCCccHHHHH
Confidence 12 256655555555554444444333
No 305
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=55.35 E-value=20 Score=20.31 Aligned_cols=37 Identities=16% Similarity=0.087 Sum_probs=23.0
Q ss_pred hcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchh
Q 036068 49 RVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALD 89 (178)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 89 (178)
.....++|..+++.+.+.| ...|..++.++.+.+...
T Consensus 48 ~~t~~~kar~Lld~l~~kG----~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 48 EPTQQQRAAMLIKMILKKD----NDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp SSSHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCHH
T ss_pred CCChHHHHHHHHHHHHHcC----HHHHHHHHHHHHHcCHHH
Confidence 3456677777777776654 345666677666655433
No 306
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=53.50 E-value=50 Score=25.94 Aligned_cols=51 Identities=14% Similarity=0.031 Sum_probs=16.8
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhh
Q 036068 73 FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEK 125 (178)
Q Consensus 73 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 125 (178)
.-..-++..|.+.|-.+.|.++++.+-+.-.. ....+ ..+..|.|.|+++.
T Consensus 517 dd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~ 567 (570)
T 3f3f_C 517 DDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYEL 567 (570)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhh
Confidence 34455666666666666666666655543332 12233 44445666665554
No 307
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=52.60 E-value=32 Score=20.96 Aligned_cols=53 Identities=13% Similarity=-0.030 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHH
Q 036068 39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWI 94 (178)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 94 (178)
.|.-.|...+.+++.+-|.++++-..+.| +...|.+++-.|-..=+++-+.++
T Consensus 34 LykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 34 LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 34456666778888888999998888876 567788888888777666665554
No 308
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=51.84 E-value=45 Score=21.40 Aligned_cols=57 Identities=12% Similarity=0.084 Sum_probs=33.7
Q ss_pred HhhcCChhHHHHHHHHhHhCCCCCcH-HHHHHHHHHhccccchhhHHHHHHHHHHhCcccch
Q 036068 47 YLRVNRFREALTLFQEMQTSNIMGDE-FTIVSILTARANLRALDLGEWIKTYIDKNKVKNDI 107 (178)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 107 (178)
.++.|+.+....++.. ++.... ..=.+.+...+..++.+.-.++.+.+.+.|..++.
T Consensus 13 Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~ 70 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS 70 (186)
T ss_dssp HHHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCC
Confidence 3567888876655543 321111 11124555556667776667788888888876653
No 309
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=51.57 E-value=34 Score=20.74 Aligned_cols=47 Identities=19% Similarity=0.132 Sum_probs=34.3
Q ss_pred HHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccch
Q 036068 42 AMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88 (178)
Q Consensus 42 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 88 (178)
.++..+...+..-.|.++++.+.+.+...+..|.--.|+.+.+.|-.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 46666666666778888999988877666777777777777776654
No 310
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=50.29 E-value=1.2e+02 Score=25.75 Aligned_cols=44 Identities=11% Similarity=0.092 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 107 IFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 107 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
..++..++..|.+.... -|..++....+.++.+.+.++|.++.+
T Consensus 215 ~~vLr~l~~Iy~k~~~~--------dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 215 SSILRKSFDFLMNMPNC--------DYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHHHHHHHSSSC--------CHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCch--------hHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 36677777777775422 366778888888899999999988763
No 311
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=50.05 E-value=29 Score=21.34 Aligned_cols=48 Identities=19% Similarity=0.172 Sum_probs=34.6
Q ss_pred HHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccch
Q 036068 41 TAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88 (178)
Q Consensus 41 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 88 (178)
..++..+...+..-.|.++++++.+.+...+..|.---|+.+.+.|-.
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 456677777666777888999988877667777766666766666544
No 312
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=49.90 E-value=38 Score=21.54 Aligned_cols=64 Identities=8% Similarity=0.062 Sum_probs=40.2
Q ss_pred HHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhC--CCCCcHHHHHHHHHHhccccch
Q 036068 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTS--NIMGDEFTIVSILTARANLRAL 88 (178)
Q Consensus 25 a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~ 88 (178)
+.+.+++-.-+-+..-..++..+...+..-.|.++++.+.+. +...+..|.---|+.+.+.|-.
T Consensus 20 ~~~~L~~~g~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 20 FKKILRQGGLKYTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 333333333344445566777777777777888888888776 6556666665566666666544
No 313
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=49.58 E-value=39 Score=20.08 Aligned_cols=77 Identities=6% Similarity=-0.009 Sum_probs=43.0
Q ss_pred hccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036068 82 RANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRA 159 (178)
Q Consensus 82 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 159 (178)
..+.|++++|.+.++.-.+.-.. --..-+.+|..-...+..+-...=+..-..|+.+..-..-.++..++|+++...
T Consensus 32 ~Ak~gdfe~A~~~l~eA~~~l~~-AH~~QT~Liq~Ea~g~~~~~slLlvHAQDhLMta~~~~~la~e~I~lyk~~~~~ 108 (109)
T 3k1s_A 32 FAKQGKMAEADEAMVKAKEAINE-AHHFQTELIQSEARGEKTEISVLLIHAQDHLMNAITVKELAAEFIDLYKKLEAK 108 (109)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCCCCeeehhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45778888888888766543221 233344566555544443322222333445565555555566777777776543
No 314
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=48.95 E-value=46 Score=20.73 Aligned_cols=64 Identities=6% Similarity=0.013 Sum_probs=40.2
Q ss_pred HHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccch
Q 036068 25 ARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88 (178)
Q Consensus 25 a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 88 (178)
+.+.+++-.-+....-..++..+...+..-.|.++++.+.+.+...+..|.--.|+.+.+.|-.
T Consensus 14 ~~~~l~~~g~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 14 LRMSIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHHCC--CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3334443333444555567777777666778888999988876666777766666666666543
No 315
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.86 E-value=74 Score=23.50 Aligned_cols=83 Identities=10% Similarity=-0.004 Sum_probs=53.3
Q ss_pred HHHHhhcCChhHHHHHHHHhHhCC----------------CCCcHHHHHHHHHHhccccchhhHHHHHHHHHH---h--C
Q 036068 44 IDGYLRVNRFREALTLFQEMQTSN----------------IMGDEFTIVSILTARANLRALDLGEWIKTYIDK---N--K 102 (178)
Q Consensus 44 i~~~~~~~~~~~a~~~~~~m~~~~----------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~--~ 102 (178)
+.......+.+++.+.++++...- ..+.......+.+.+...++.++|..+++.... . +
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 445556678889999888764321 123345556677788889999999999977653 2 2
Q ss_pred ccc--chHHHHHHHHHHHhcCChhhh
Q 036068 103 VKN--DIFAGNALIDMYCICADVEKA 126 (178)
Q Consensus 103 ~~~--~~~~~~~ll~~~~~~~~~~~a 126 (178)
++| ....|......|...+++..+
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~ 188 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSF 188 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 333 233455556666667777654
No 316
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=48.82 E-value=51 Score=21.24 Aligned_cols=113 Identities=10% Similarity=-0.033 Sum_probs=78.3
Q ss_pred CcchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR 82 (178)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 82 (178)
.+|..+-...+.++.+.++.+....+.+.+.++|...-...+.++.+.++. ++...+.++.. .++...-...+.++
T Consensus 61 ~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL 136 (211)
T 3ltm_A 61 DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDE-RAVEPLIKALK---DEDWFVRIAAAFAL 136 (211)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-HHHHHHHHHHh---CCCHHHHHHHHHHH
Confidence 456666667788888888877777777777888888888888999988874 45555555554 35666666677777
Q ss_pred ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCCh
Q 036068 83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADV 123 (178)
Q Consensus 83 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 123 (178)
.+.++.+. ...+..+.+ .++..+-...+.++.+.+..
T Consensus 137 ~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~ 173 (211)
T 3ltm_A 137 GEIGDERA-VEPLIKALK---DEDGWVRQSAADALGEIGGE 173 (211)
T ss_dssp HHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCSH
T ss_pred HHcCCHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCch
Confidence 77776543 344433433 45677778888888888753
No 317
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=48.80 E-value=27 Score=18.10 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=15.7
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCh
Q 036068 141 AISGNGDKALDMFSQMLRASIKPDE 165 (178)
Q Consensus 141 ~~~~~~~~a~~~~~~m~~~g~~p~~ 165 (178)
...|+.+.|...+-+|...+..|++
T Consensus 34 a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 34 AQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp TTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 3456677777777666666666653
No 318
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=48.69 E-value=43 Score=23.06 Aligned_cols=46 Identities=4% Similarity=-0.074 Sum_probs=23.6
Q ss_pred HHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHH
Q 036068 12 IVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREAL 57 (178)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~ 57 (178)
.+...++.|+.+.+..+++.-..++...-.+.+...+..|+.+-+.
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~ 79 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVK 79 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 3455566778777777776533222211223444445556655443
No 319
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=47.41 E-value=32 Score=20.75 Aligned_cols=44 Identities=9% Similarity=0.003 Sum_probs=27.6
Q ss_pred HHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhC
Q 036068 59 LFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK 102 (178)
Q Consensus 59 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 102 (178)
+|+.+.+..+.|++..-..-|-.+...++++.|.+++..+....
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~~ 91 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVDH 91 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHST
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCc
Confidence 44555555665554443333444567789999999988777643
No 320
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=46.90 E-value=66 Score=21.94 Aligned_cols=83 Identities=16% Similarity=0.186 Sum_probs=48.2
Q ss_pred HHHHHHhhcCChhHHHHHHHHhHhC--CCCC----cHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHH
Q 036068 42 AMIDGYLRVNRFREALTLFQEMQTS--NIMG----DEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALID 115 (178)
Q Consensus 42 ~li~~~~~~~~~~~a~~~~~~m~~~--~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 115 (178)
--++.+....++++|.+++++..+. ++.+ ........++.-.....-..+..+.+.+.. .+++......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 3467778889999999999886542 2221 111222233333333333445555555533 445666667778
Q ss_pred HHHhcCChhhhc
Q 036068 116 MYCICADVEKAQ 127 (178)
Q Consensus 116 ~~~~~~~~~~a~ 127 (178)
.+.+.|+-+.|.
T Consensus 100 ~L~rLg~~~~A~ 111 (235)
T 2d2s_A 100 NMIKLGLPEQAL 111 (235)
T ss_dssp HHHHTTCHHHHH
T ss_pred HHHHCCChhHHH
Confidence 888888888775
No 321
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=46.80 E-value=16 Score=25.64 Aligned_cols=27 Identities=19% Similarity=0.477 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCCC
Q 036068 9 WTAIVSRYINRGQVDIARQCFDQMPER 35 (178)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~~ 35 (178)
=|.+++.|...|+++.|.++++.++..
T Consensus 37 ~n~l~R~FL~~gkl~AAr~l~~rlp~~ 63 (270)
T 3cqc_A 37 GNAIMRKFLASKKHEAAKEVFVKIPQD 63 (270)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHCChH
Confidence 378999999999999999999999864
No 322
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=46.58 E-value=45 Score=20.36 Aligned_cols=86 Identities=8% Similarity=-0.033 Sum_probs=44.3
Q ss_pred HHHHHHHhcCChhHHHHHhccCCC----CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHH--HHHHHHhcc
Q 036068 11 AIVSRYINRGQVDIARQCFDQMPE----RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTI--VSILTARAN 84 (178)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~ll~~~~~ 84 (178)
..+...++.|+.+.+..+++.-.. .+..-++. +...+..|+.+- ++.+.+.|..++.... .+.+...++
T Consensus 10 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 84 (165)
T 3twr_A 10 RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTP-LHFAAGYNRVSV----VEYLLQHGADVHAKDKGGLVPLHNACS 84 (165)
T ss_dssp HHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCH-HHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCH-HHHHHHcChHHH----HHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence 345566778999999999885432 22222333 334456666544 4444555655443211 122333334
Q ss_pred ccchhhHHHHHHHHHHhCccc
Q 036068 85 LRALDLGEWIKTYIDKNKVKN 105 (178)
Q Consensus 85 ~~~~~~a~~~~~~m~~~~~~~ 105 (178)
.|+.+ +.+.+.+.|..+
T Consensus 85 ~~~~~----~v~~Ll~~g~~~ 101 (165)
T 3twr_A 85 YGHYE----VAELLVKHGAVV 101 (165)
T ss_dssp TTCHH----HHHHHHHTTCCT
T ss_pred cCcHH----HHHHHHhCCCCC
Confidence 45543 445555566544
No 323
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=46.29 E-value=56 Score=20.93 Aligned_cols=53 Identities=11% Similarity=0.024 Sum_probs=38.2
Q ss_pred hhcCChhHHHHHHHHhHhCCCCC--cHHHHHHHHH-Hh-----ccccchhhHHHHHHHHHH
Q 036068 48 LRVNRFREALTLFQEMQTSNIMG--DEFTIVSILT-AR-----ANLRALDLGEWIKTYIDK 100 (178)
Q Consensus 48 ~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~-~~-----~~~~~~~~a~~~~~~m~~ 100 (178)
...|++-+|.++|+..-...-.+ ....|-.||+ .. .+.|+.+.|..++.....
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34489999999999987765555 5566777777 22 456888888888876654
No 324
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=45.90 E-value=51 Score=20.38 Aligned_cols=62 Identities=10% Similarity=-0.005 Sum_probs=38.0
Q ss_pred HHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccch
Q 036068 26 RQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88 (178)
Q Consensus 26 ~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 88 (178)
.+.+++-.-+....-..++..+...+ .-.|.++++++.+.+...+..|.---|+.+.+.|-.
T Consensus 7 ~~~L~~~g~r~T~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 7 KSDLRQRGYRLTPQRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHHTTTCCCCHHHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHcCCCcCHHHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 33444433333334445566666666 667888999988877666777766666666655543
No 325
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=45.39 E-value=31 Score=22.50 Aligned_cols=16 Identities=13% Similarity=0.169 Sum_probs=9.0
Q ss_pred HHhcCChhHHHHHhcc
Q 036068 16 YINRGQVDIARQCFDQ 31 (178)
Q Consensus 16 ~~~~~~~~~a~~~~~~ 31 (178)
.++.|+++.+..+++.
T Consensus 16 A~~~g~~~~~~~Ll~~ 31 (240)
T 3eu9_A 16 ATQYGIYERCRELVEA 31 (240)
T ss_dssp HHHTTCHHHHHHHHHT
T ss_pred HHHcCChHHHHHHHHc
Confidence 3456666666555554
No 326
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=44.29 E-value=22 Score=19.26 Aligned_cols=37 Identities=14% Similarity=0.049 Sum_probs=23.6
Q ss_pred ChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccch
Q 036068 52 RFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88 (178)
Q Consensus 52 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 88 (178)
..++|.+.|.+|++..-.....+|...+..+....++
T Consensus 13 t~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~~DpRY 49 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRY 49 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHTSGGG
T ss_pred CHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCccc
Confidence 3577777888776543334446777777766655444
No 327
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=43.98 E-value=25 Score=23.54 Aligned_cols=82 Identities=12% Similarity=0.061 Sum_probs=45.3
Q ss_pred hhHHHHHHHHhHhCCCCCcHHHHH-----HHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 53 FREALTLFQEMQTSNIMGDEFTIV-----SILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 53 ~~~a~~~~~~m~~~~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
.+.|+.+|+.+.+.-- +-..... ..+-.|.+.|.+++|.+++++.......+ .-....+....+..+...-.
T Consensus 94 LESAl~v~~~I~~e~~-~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~--~~lr~kL~~II~~Kd~~H~~ 170 (211)
T 3bqo_A 94 LESALMIWGSIEKEHD-KLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSH--MPFKSKLLMIISQKDTFHSF 170 (211)
T ss_dssp HHHHHHHHTTSCSCCC-HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----C--CTTHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHccCCCcHH
Confidence 5789999988876531 1111222 23346899999999999999865543221 11334444444555444433
Q ss_pred cchhhHHHHH
Q 036068 128 KDKFSWTTMI 137 (178)
Q Consensus 128 ~~~~~~~~li 137 (178)
--..+|+.++
T Consensus 171 lqnFSy~~~~ 180 (211)
T 3bqo_A 171 FQHFSYNHMM 180 (211)
T ss_dssp HHHSCHHHHH
T ss_pred HHHccHHHHH
Confidence 3344555554
No 328
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=43.50 E-value=61 Score=20.53 Aligned_cols=55 Identities=9% Similarity=0.053 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 036068 89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165 (178)
Q Consensus 89 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 165 (178)
++..++|..|...|+-..... -|..-...+...|++++|.++|+.-++.+-.|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~Al----------------------fYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSP----------------------LYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHH----------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHH----------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 347888888888877554332 3666667778889999999999998888777743
No 329
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=41.88 E-value=28 Score=18.05 Aligned_cols=21 Identities=5% Similarity=0.221 Sum_probs=16.0
Q ss_pred CChhHHHHHHHHhHhCCCCCc
Q 036068 51 NRFREALTLFQEMQTSNIMGD 71 (178)
Q Consensus 51 ~~~~~a~~~~~~m~~~~~~~~ 71 (178)
=+++.|...|.+++..|-.|.
T Consensus 34 Wd~~~A~~~F~~l~~~~~IP~ 54 (59)
T 1oai_A 34 WDYTRSAQAFTHLKAKGEIPE 54 (59)
T ss_dssp TCHHHHHHHHHHHHHTTCSCG
T ss_pred CCHHHHHHHHHHHHHcCCCCH
Confidence 478999999999987654443
No 330
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=41.26 E-value=78 Score=21.13 Aligned_cols=58 Identities=7% Similarity=0.056 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCChhHHHHHhccCCCCChh---HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc
Q 036068 10 TAIVSRYINRGQVDIARQCFDQMPERDYV---LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD 71 (178)
Q Consensus 10 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 71 (178)
++.+...++.|+++.+..+++.-...+.. .-.+.+...+..|+.+-+ +.+.+.|..++
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~g~~~~ 66 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIV----ELLLRHGADPV 66 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH----HHHHHTTCCTT
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHH----HHHHHcCCCCc
Confidence 34566677889999888888865443211 112344445566765443 44445555444
No 331
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=41.21 E-value=46 Score=18.49 Aligned_cols=29 Identities=7% Similarity=0.030 Sum_probs=15.9
Q ss_pred CChhHHHHHHHHHhhcCChhHHHHHHHHh
Q 036068 35 RDYVLWTAMIDGYLRVNRFREALTLFQEM 63 (178)
Q Consensus 35 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m 63 (178)
|++.||+-+.+.+-+..-..+++.+.+++
T Consensus 34 pgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 34 PNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp TTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 46666666655555544445555555444
No 332
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=41.15 E-value=41 Score=17.91 Aligned_cols=45 Identities=11% Similarity=-0.020 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHhhhh
Q 036068 131 FSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDEVAYVGVLSACT 176 (178)
Q Consensus 131 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~a~~ 176 (178)
..++.++..++...-.+.+...+++..+.|. .+...|.--++..+
T Consensus 3 pl~~Qll~l~Aed~AieDaiy~L~~aL~~g~-I~l~~ylK~vR~La 47 (65)
T 2f6m_A 3 DGLNQLYNLVAQDYALTDTIEALSRMLHRGT-IPLDTFVKQGRELA 47 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 3567788888888888999999999999884 56666655454443
No 333
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=40.98 E-value=33 Score=22.61 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=21.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 134 TTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 134 ~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
-.+|.|+.+.|++++|.++..++.+
T Consensus 36 LqvI~GLlql~~ydea~~yI~~~~~ 60 (192)
T 1ixm_A 36 LQLIKGNLSLQKYDRVFEMIEEMVI 60 (192)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3678999999999999999888754
No 334
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=40.17 E-value=26 Score=19.59 Aligned_cols=37 Identities=11% Similarity=-0.048 Sum_probs=24.1
Q ss_pred ChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccch
Q 036068 52 RFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88 (178)
Q Consensus 52 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 88 (178)
..++|...|.+|+...-.+...||...+...+...++
T Consensus 15 t~eea~~~Fk~LL~e~~V~p~~tWe~~~~~i~~DpRY 51 (82)
T 2dod_A 15 PLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRY 51 (82)
T ss_dssp CHHHHHHHHHHHHHHTTCCSSSCHHHHHHHHHTCSGG
T ss_pred CHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCCcc
Confidence 3577888888876543333447888777776655544
No 335
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=39.64 E-value=1.2e+02 Score=23.00 Aligned_cols=63 Identities=10% Similarity=0.056 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc--------HHHHHHHHH-HhccccchhhHHHHHHHHHHh
Q 036068 39 LWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD--------EFTIVSILT-ARANLRALDLGEWIKTYIDKN 101 (178)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--------~~~~~~ll~-~~~~~~~~~~a~~~~~~m~~~ 101 (178)
..|.|...|.+.++.+.|..+++-+...+..|+ ..+|.-.+. .+...+++.+|.+.+....+.
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 567889999999999999999999988765332 345544333 345678899998888766654
No 336
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=39.11 E-value=78 Score=20.58 Aligned_cols=19 Identities=5% Similarity=0.132 Sum_probs=13.2
Q ss_pred HHHHHHhcCChhHHHHHhc
Q 036068 12 IVSRYINRGQVDIARQCFD 30 (178)
Q Consensus 12 li~~~~~~~~~~~a~~~~~ 30 (178)
.+...++.|+.+.+..+++
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~ 30 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVN 30 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 4555566788887777776
No 337
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=39.05 E-value=82 Score=20.80 Aligned_cols=77 Identities=10% Similarity=0.083 Sum_probs=51.1
Q ss_pred cCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCc-----------------HHHHHHHHHH
Q 036068 19 RGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGD-----------------EFTIVSILTA 81 (178)
Q Consensus 19 ~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----------------~~~~~~ll~~ 81 (178)
.|.+..++-++....--+..-|..| .|-+..++.+|...++.+....+..| ...|+.+...
T Consensus 46 ngEY~R~Lf~L~~lNT~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~l 123 (242)
T 3kae_A 46 NGEYTRALFHLHKLNTCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDL 123 (242)
T ss_dssp TTCHHHHHHHHHTCCBHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHH
T ss_pred cchHhHHHHHHHhcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHH
Confidence 5566666655555443333334433 34567789999999999886554322 3457777788
Q ss_pred hccccchhhHHHHHHH
Q 036068 82 RANLRALDLGEWIKTY 97 (178)
Q Consensus 82 ~~~~~~~~~a~~~~~~ 97 (178)
|.+.|+.++|...+..
T Consensus 124 ltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 124 CTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhcCHHHhhhHhhh
Confidence 8899999999888754
No 338
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.31 E-value=1.4e+02 Score=23.24 Aligned_cols=60 Identities=12% Similarity=0.099 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHhcCChhHHHHHhccCCCCCh-------hHHHH-HHHHHhhcCChhHHHHHHHHhHhC
Q 036068 7 ISWTAIVSRYINRGQVDIARQCFDQMPERDY-------VLWTA-MIDGYLRVNRFREALTLFQEMQTS 66 (178)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-------~~~~~-li~~~~~~~~~~~a~~~~~~m~~~ 66 (178)
..+|.+++.|...+.++.|..+..+..-|.. .+|.- +-..+.-.+++.+|.+.|..-.+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3578888888888888888888887754421 12221 233445567888888877776543
No 339
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=38.27 E-value=81 Score=20.47 Aligned_cols=145 Identities=11% Similarity=0.008 Sum_probs=73.9
Q ss_pred HHHHHHhcCChhHHHHHhccCC----CCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCC----CCCcHHHHHHHHHHhc
Q 036068 12 IVSRYINRGQVDIARQCFDQMP----ERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSN----IMGDEFTIVSILTARA 83 (178)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~~~~~ll~~~~ 83 (178)
.+...++.|+.+.+..+++.-. .+|..-++.|. ..+..|+.+-+..+++.-.... ...+..-.+.+ ...+
T Consensus 6 ~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L-~~A~ 83 (232)
T 2rfa_A 6 PLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALH-IAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTAL-HIAV 83 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHH-HHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHH-HHHH
T ss_pred HHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHH-HHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHH-HHHH
Confidence 4566678899999999988622 23333333433 3456677666655555422110 01111222233 3334
Q ss_pred cccchhhHHHHHHHHHHhCcccchHH---------------HHHHHHHHHhcCChhhhc-----------cchhhHHHHH
Q 036068 84 NLRALDLGEWIKTYIDKNKVKNDIFA---------------GNALIDMYCICADVEKAQ-----------KDKFSWTTMI 137 (178)
Q Consensus 84 ~~~~~~~a~~~~~~m~~~~~~~~~~~---------------~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li 137 (178)
..|+.+ +++.+.+.|..++... -...+...++.|+.+-+. .|..-. +.+
T Consensus 84 ~~~~~~----~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~-t~L 158 (232)
T 2rfa_A 84 INQNVN----LVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGN-TVL 158 (232)
T ss_dssp HTTCHH----HHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC-CHH
T ss_pred HcCCHH----HHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC-CHH
Confidence 445544 4455555555443210 112233333444444333 233333 334
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCC
Q 036068 138 VGLAISGNGDKALDMFSQMLRASIKP 163 (178)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~m~~~g~~p 163 (178)
...+..|+.+-+.++++.+.+.|..+
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCch
Confidence 45567888888888888888877544
No 340
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1
Probab=38.02 E-value=87 Score=20.80 Aligned_cols=73 Identities=4% Similarity=-0.026 Sum_probs=40.2
Q ss_pred ChhHHHHHHHHhHhC--CCCCcHHHHHHHHHHhccccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHhcCChh
Q 036068 52 RFREALTLFQEMQTS--NIMGDEFTIVSILTARANLRALDLGEWIKTYIDK--NKVKNDIFAGNALIDMYCICADVE 124 (178)
Q Consensus 52 ~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~~ll~~~~~~~~~~ 124 (178)
+...+-.+++...+. +-..+...|..++.+.....+.++..+.++.+.+ .=..++..+...++..+.+.....
T Consensus 75 dv~~va~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~~~~~~l~~ll~~~~LP~~n~~~L~~L~~~L~~V~~~~ 151 (216)
T 1pbw_A 75 DVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTS 151 (216)
T ss_dssp CHHHHHHHHHHHHHTSSSCSSCHHHHHHHHHHGGGCCSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcc
Confidence 444444444444332 1122345677777776555555555666666665 444556667777777666654433
No 341
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=37.62 E-value=53 Score=21.32 Aligned_cols=138 Identities=12% Similarity=0.011 Sum_probs=68.7
Q ss_pred HHHHHHhcCChhHHHHHhccCCC----CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcH---HHHHHHHHHhcc
Q 036068 12 IVSRYINRGQVDIARQCFDQMPE----RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDE---FTIVSILTARAN 84 (178)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~ 84 (178)
.+...++.|+++....+++.-.. +|..-++.|. ..+..|+.+-+ +.+.+.|..++. .-.+.+ ...++
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L-~~A~~ 82 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALH-WACSAGHTEIV----EFLLQLGVPVNDKDDAGWSPL-HIAAS 82 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHH-HHHHHTCHHHH----HHHHHTTCCSCCCCTTSCCHH-HHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHH-HHHHcCcHHHH----HHHHHhCCCCCCcCCCCCCHH-HHHHH
Confidence 46777889999999998876432 2333344444 34556665544 444455544443 222233 33344
Q ss_pred ccchhhHHHHHHHHHHhCcccchHH--HHHHHHHHHhcCChhhhc-----------cchhhHHHHHHHHHhcCChhHHHH
Q 036068 85 LRALDLGEWIKTYIDKNKVKNDIFA--GNALIDMYCICADVEKAQ-----------KDKFSWTTMIVGLAISGNGDKALD 151 (178)
Q Consensus 85 ~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~-----------~~~~~~~~li~~~~~~~~~~~a~~ 151 (178)
.|+. ++++.+.+.|..++... -...+...++.|+.+-+. .+....+. +...+..|+.+-+
T Consensus 83 ~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v-- 155 (231)
T 3aji_A 83 AGXD----EIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATA-MHRAAAKGNLKMV-- 155 (231)
T ss_dssp HTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHHTCHHHH--
T ss_pred cCHH----HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcH-HHHHHHcCCHHHH--
Confidence 4554 45555666665443211 112334444555555443 22222223 3334455665544
Q ss_pred HHHHHHHcCCCCC
Q 036068 152 MFSQMLRASIKPD 164 (178)
Q Consensus 152 ~~~~m~~~g~~p~ 164 (178)
+.+.+.|..++
T Consensus 156 --~~Ll~~g~~~~ 166 (231)
T 3aji_A 156 --HILLFYKASTN 166 (231)
T ss_dssp --HHHHHTTCCSC
T ss_pred --HHHHhcCCCcc
Confidence 44445565554
No 342
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=37.55 E-value=76 Score=19.93 Aligned_cols=41 Identities=10% Similarity=0.222 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCCC-ChhHHHHHHHHHhh
Q 036068 9 WTAIVSRYINRGQVDIARQCFDQMPER-DYVLWTAMIDGYLR 49 (178)
Q Consensus 9 ~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~li~~~~~ 49 (178)
+..++..+...|-+|+...-+.+|... |......++..|..
T Consensus 10 ~~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl~ 51 (153)
T 3us6_A 10 WVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFD 51 (153)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHHH
T ss_pred HHHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Confidence 566777788888888777777777653 55666677776653
No 343
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=36.75 E-value=98 Score=21.01 Aligned_cols=54 Identities=13% Similarity=0.095 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 036068 89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPD 164 (178)
Q Consensus 89 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 164 (178)
++...+|..|...|+-..... -|......+...|++.+|.++|+.-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~Al----------------------fYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSI----------------------FYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHH----------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHH----------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 567789999988887554332 245555556667777777777777776666663
No 344
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=36.08 E-value=1.4e+02 Score=22.51 Aligned_cols=115 Identities=11% Similarity=0.038 Sum_probs=60.6
Q ss_pred hHHHHHHHHhHh--------CCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCc----ccchHHHHHHHHHHHhcC
Q 036068 54 REALTLFQEMQT--------SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKV----KNDIFAGNALIDMYCICA 121 (178)
Q Consensus 54 ~~a~~~~~~m~~--------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~----~~~~~~~~~ll~~~~~~~ 121 (178)
++...++++... .++..+......+... ..|+..++..+++.+..... .....+...+-....+..
T Consensus 168 edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~~ 245 (447)
T 3pvs_A 168 EDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERS 245 (447)
T ss_dssp HHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhhh
Confidence 444555555433 2344555566656655 35778888888877765432 111122222222222211
Q ss_pred C-hhhhccchhhHHHHHHHH---HhcCChhHHHHHHHHHHHcCCCCChhHHHHHHh
Q 036068 122 D-VEKAQKDKFSWTTMIVGL---AISGNGDKALDMFSQMLRASIKPDEVAYVGVLS 173 (178)
Q Consensus 122 ~-~~~a~~~~~~~~~li~~~---~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 173 (178)
. ++ .+....--++.++ .+.++.+.|+.++.+|++.|..|....=..++.
T Consensus 246 ~~~d---k~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~ 298 (447)
T 3pvs_A 246 ARFD---NKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAI 298 (447)
T ss_dssp CC------CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hccC---CccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 0 11 1111222344444 456899999999999999998776554444443
No 345
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=35.55 E-value=22 Score=21.49 Aligned_cols=52 Identities=10% Similarity=0.134 Sum_probs=28.5
Q ss_pred ChhHHHHHHHHhHhCCCC-CcHHHHHHHHHHhccccchhhHHHHHHHHHHhCc
Q 036068 52 RFREALTLFQEMQTSNIM-GDEFTIVSILTARANLRALDLGEWIKTYIDKNKV 103 (178)
Q Consensus 52 ~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 103 (178)
.+++|.+++..|++.-+. -.+..||.+|..+...=.-.+...+|..+.+.++
T Consensus 42 ~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~~~~~l~~FW~~iv~~~l 94 (120)
T 1q2z_A 42 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQLNHFWEIVVQDGI 94 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTSTTHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhHHHHHHHHHHCCc
Confidence 577888888887765433 2456777777766421111111344445555544
No 346
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=34.78 E-value=82 Score=19.55 Aligned_cols=52 Identities=8% Similarity=0.020 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHhhcC-ChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccch
Q 036068 37 YVLWTAMIDGYLRVN-RFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88 (178)
Q Consensus 37 ~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 88 (178)
...-..++..+...+ ..-.|.++++.+.+.+...+..|.---|+.+.+.|-.
T Consensus 16 T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 16 TLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp CHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 333445666666665 5667888999998887666777766666766666544
No 347
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=34.76 E-value=1.7e+02 Score=23.22 Aligned_cols=77 Identities=6% Similarity=-0.101 Sum_probs=57.5
Q ss_pred HHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccch
Q 036068 10 TAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88 (178)
Q Consensus 10 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 88 (178)
+..+..+++.+++.....++.. +..+...-.....+....|+..+|....+++-..|. .....+..++..+.+.|.+
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCC
Confidence 4567788889999999998887 433666666677888888998888888888776663 3556778888888766654
No 348
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=34.58 E-value=78 Score=19.20 Aligned_cols=53 Identities=9% Similarity=0.009 Sum_probs=34.5
Q ss_pred ChhHHHHHHHHHhhcC-ChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccch
Q 036068 36 DYVLWTAMIDGYLRVN-RFREALTLFQEMQTSNIMGDEFTIVSILTARANLRAL 88 (178)
Q Consensus 36 ~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 88 (178)
....-..++..+...+ ..-.|.++++.+.+.+...+..|.---|+.+.+.|-.
T Consensus 16 ~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 16 VTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp CCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3344445666666665 5677888999988887666777766666666555543
No 349
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=34.46 E-value=1.1e+02 Score=20.91 Aligned_cols=15 Identities=7% Similarity=-0.068 Sum_probs=6.7
Q ss_pred HHhcCChhHHHHHhc
Q 036068 16 YINRGQVDIARQCFD 30 (178)
Q Consensus 16 ~~~~~~~~~a~~~~~ 30 (178)
.+..|+.+-+..+++
T Consensus 69 A~~~g~~~~v~~Ll~ 83 (285)
T 3kea_A 69 AATLEDTKIVKILLF 83 (285)
T ss_dssp HTTSSSCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 334444444444444
No 350
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=33.69 E-value=55 Score=21.59 Aligned_cols=130 Identities=11% Similarity=0.028 Sum_probs=72.6
Q ss_pred HHHHhcCChhHHHHHhccCCCCChhHHHHHHH-HHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHH
Q 036068 14 SRYINRGQVDIARQCFDQMPERDYVLWTAMID-GYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGE 92 (178)
Q Consensus 14 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 92 (178)
.-+.+-.+++.+.-+-.-+-. +...|..|+. .+.-+|++..++-++... + ..+..-|.. -++-+..++..|.
T Consensus 10 ~Ks~kY~dYdt~~fLsa~L~~-~~~eY~lL~~I~LyyngEY~R~Lf~L~~l---N-T~Ts~YYk~--LCy~klKdYkkA~ 82 (242)
T 3kae_A 10 CKSIRYRDYETAIFLAACLLP-CKPEYRMLMSIVLYLNGEYTRALFHLHKL---N-TCTSKYYES--LCYKKKKDYKKAI 82 (242)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-----CTHHHHHHHHHHTTCHHHHHHHHHTC---C-BHHHHHHHH--HHHHHTTCHHHHH
T ss_pred HHHhhcccccHHHHHHHHHcc-CChHHHhhhhhhhhhcchHhHHHHHHHhc---c-hHHHHHHHH--HHHHHHHHHHHHH
Confidence 344556667665544433332 2226666665 445678888887655432 1 112222322 3567889999999
Q ss_pred HHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHH
Q 036068 93 WIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQM 156 (178)
Q Consensus 93 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 156 (178)
..++.+....++.|+.+-.-+=..+...+ .-..-|+.+...+-+.|+.++|...|..-
T Consensus 83 ~~le~il~~kvd~d~~~d~~~~~ffvd~~------DkEfFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 83 KSLESILEGKVERDPDVDARIQEMFVDPG------DEEFFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHHHHTTCSBCCCCCCHHHHTTSCCTT------CHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcccccCcccccccceeeeccc------hHHHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 99999997666544322111111111111 12344566667777789999999888653
No 351
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=32.72 E-value=1.7e+02 Score=23.01 Aligned_cols=16 Identities=13% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChhHHH
Q 036068 135 TMIVGLAISGNGDKAL 150 (178)
Q Consensus 135 ~li~~~~~~~~~~~a~ 150 (178)
.-+..|+++|+++++.
T Consensus 554 eAL~~f~rA~~~~~Vk 569 (570)
T 3f3f_C 554 ESIANFSRAGKYELVK 569 (570)
T ss_dssp ----------------
T ss_pred HHHHHHHHcCChhhcc
Confidence 4456677777777653
No 352
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=32.07 E-value=1e+02 Score=19.77 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 036068 89 DLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQMLRASIKPDE 165 (178)
Q Consensus 89 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 165 (178)
+....+|..|...|+-..... -|..-...+...|++.+|.++|+.-++.+-.|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~Al----------------------fY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQ----------------------FYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHH----------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHH----------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 447788999998887654432 3555556667788899999999988888777754
No 353
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=31.29 E-value=92 Score=19.04 Aligned_cols=84 Identities=13% Similarity=0.059 Sum_probs=45.1
Q ss_pred HHHHHhcCChhHHHHHhccCCC----CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcH---HHHHHHHHHhccc
Q 036068 13 VSRYINRGQVDIARQCFDQMPE----RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDE---FTIVSILTARANL 85 (178)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~ 85 (178)
+...++.|+++.+..+++.-.. +|..-++.|..+ +..|+.+-+..++ +.|..++. .-. +.+...++.
T Consensus 6 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~~~v~~Ll----~~g~~~~~~~~~g~-t~L~~A~~~ 79 (172)
T 3v30_A 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWA-SAFGEIETVRFLL----EWGADPHILAKERE-SALSLASTG 79 (172)
T ss_dssp HHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHH-HHTTCHHHHHHHH----HHTCCTTCCCTTCC-CHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHH-HHcCCHHHHHHHH----HcCCCchhhcccCC-CHHHHHHHC
Confidence 4556788999999999987543 344344444444 5667765544444 44444332 112 223334445
Q ss_pred cchhhHHHHHHHHHHhCcccc
Q 036068 86 RALDLGEWIKTYIDKNKVKND 106 (178)
Q Consensus 86 ~~~~~a~~~~~~m~~~~~~~~ 106 (178)
|+.+ +.+.+.+.|..++
T Consensus 80 ~~~~----~v~~Ll~~g~~~~ 96 (172)
T 3v30_A 80 GYTD----IVGLLLERDVDIN 96 (172)
T ss_dssp TCHH----HHHHHHTTTCCTT
T ss_pred CCHH----HHHHHHHcCCCCC
Confidence 5544 4455555565443
No 354
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=31.09 E-value=58 Score=18.78 Aligned_cols=19 Identities=21% Similarity=0.464 Sum_probs=9.0
Q ss_pred HHHHhhcCChhHHHHHHHH
Q 036068 44 IDGYLRVNRFREALTLFQE 62 (178)
Q Consensus 44 i~~~~~~~~~~~a~~~~~~ 62 (178)
-+.+.+.|.+++|+++.++
T Consensus 22 Ae~ll~~gkydeAIech~k 40 (97)
T 2crb_A 22 ADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHH
Confidence 3444455555555444433
No 355
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=30.55 E-value=1.1e+02 Score=19.49 Aligned_cols=114 Identities=11% Similarity=-0.014 Sum_probs=77.1
Q ss_pred CcchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHh
Q 036068 3 NKDVISWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTAR 82 (178)
Q Consensus 3 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 82 (178)
.++..+-...+.++.+.|+.+....+.+.+.+++...-...+.++.+.++.+ +...+.++.. .++...-...+.++
T Consensus 56 ~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL 131 (201)
T 3ltj_A 56 DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFAL 131 (201)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 3555566667788888888777777777778888888888888998888754 4445555554 35666666677777
Q ss_pred ccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChh
Q 036068 83 ANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVE 124 (178)
Q Consensus 83 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 124 (178)
.+.++.+ +...+..+.+ .++..+-...+.++.+.|..+
T Consensus 132 ~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~~ 169 (201)
T 3ltj_A 132 GEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGER 169 (201)
T ss_dssp HHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSHH
T ss_pred HHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCchh
Confidence 7776644 3333333333 356777788888888887543
No 356
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=28.88 E-value=1.1e+02 Score=18.99 Aligned_cols=75 Identities=12% Similarity=-0.010 Sum_probs=45.7
Q ss_pred CCCCcHHHHHHHHHHhcccc---chhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhc
Q 036068 67 NIMGDEFTIVSILTARANLR---ALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAIS 143 (178)
Q Consensus 67 ~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~ 143 (178)
+-.|+..|--.+.-++.+.. +..++..+++.+.+.+..-. ...+-.|..|+.+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~-----------------------Rd~LYyLAvg~ykl 91 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR-----------------------RECLYYLTIGCYKL 91 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH-----------------------HHHHHHHHHHHHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchh-----------------------HHHHHHHHHHHHHh
Confidence 33556665555555555554 45577888888777653211 22344555677777
Q ss_pred CChhHHHHHHHHHHHcCCCCChh
Q 036068 144 GNGDKALDMFSQMLRASIKPDEV 166 (178)
Q Consensus 144 ~~~~~a~~~~~~m~~~g~~p~~~ 166 (178)
|++++|.++.+.+++. .|+..
T Consensus 92 gdY~~Ar~y~d~lL~~--eP~N~ 112 (134)
T 3o48_A 92 GEYSMAKRYVDTLFEH--ERNNK 112 (134)
T ss_dssp TCHHHHHHHHHHHHTT--CTTCH
T ss_pred hhHHHHHHHHHHHHhh--CCCCH
Confidence 8888888888887753 56543
No 357
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=28.87 E-value=1.7e+02 Score=21.29 Aligned_cols=145 Identities=11% Similarity=0.026 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHhcCChhHHHHHhccCC-------CC--ChhHHHHHHHHHhhcCCh--hHH----HHHH-----------
Q 036068 7 ISWTAIVSRYINRGQVDIARQCFDQMP-------ER--DYVLWTAMIDGYLRVNRF--REA----LTLF----------- 60 (178)
Q Consensus 7 ~~~~~li~~~~~~~~~~~a~~~~~~m~-------~~--~~~~~~~li~~~~~~~~~--~~a----~~~~----------- 60 (178)
..|-++...|.+.+++++|.+++..-- +. -...-..+++.|.+.+-. ++. .+++
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~ 115 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRK 115 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHH
Confidence 467788889999999999888765431 11 111222344555554310 111 1111
Q ss_pred ---HHhHh----CC--CCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchh
Q 036068 61 ---QEMQT----SN--IMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKF 131 (178)
Q Consensus 61 ---~~m~~----~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 131 (178)
+++.+ .| ..-+......+-..|.+.+++.+|+..| . .|-.+++..+..++.-+.+.+.. ...|..
T Consensus 116 ~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~---i-lg~~~s~~~~a~mL~ew~~~~~~--~e~dlf 189 (336)
T 3lpz_A 116 RFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL---V-LGTKESPEVLARMEYEWYKQDES--HTAPLY 189 (336)
T ss_dssp HHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH---T-TSCTTHHHHHHHHHHHHHHTSCG--GGHHHH
T ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH---H-hcCCchHHHHHHHHHHHHHhcCC--ccHHHH
Confidence 11110 01 1122333334455555556666665554 1 34455557787776666665542 234555
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036068 132 SWTTMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 132 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
.-.+++. |...++...|..+++...+
T Consensus 190 iaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 190 CARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 5555554 4457788888887766553
No 358
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=28.19 E-value=2.8e+02 Score=23.66 Aligned_cols=111 Identities=10% Similarity=0.145 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCCCChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccc
Q 036068 8 SWTAIVSRYINRGQVDIARQCFDQMPERDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRA 87 (178)
Q Consensus 8 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 87 (178)
.+..|++. .|.-+.++..++++++... ...-..+++++...|-.+...-+.+.+....+.+.... ..+..+..-..=
T Consensus 312 ~f~~Lv~~-lR~~~~e~L~~l~~~~~~~-~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~l~~~ea~-~~l~~~~~~~~P 388 (1056)
T 1lsh_A 312 KFLRLTAF-LRNVDAGVLQSIWHKLHQQ-KDYRRWILDAVPAMATSEALLFLKRTLASEQLTSAEAT-QIVASTLSNQQA 388 (1056)
T ss_dssp HHHHHHHH-HTTSCHHHHHHHHHHHTTS-HHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCSCHHHHH-HHHHHHHHTCCC
T ss_pred HHHHHHHH-HhcCCHHHHHHHHHHHhcc-HHHHHHHHHHhHhcCCHHHHHHHHHHHHcCCCCHHHHH-HHHHHhhccCCC
Confidence 34444443 4555666667777766542 22334588999999876555544555555444433322 222222221111
Q ss_pred hhhHHHHHHHHHHhC-cccc-------hHHHHHHHHHHHhcC
Q 036068 88 LDLGEWIKTYIDKNK-VKND-------IFAGNALIDMYCICA 121 (178)
Q Consensus 88 ~~~a~~~~~~m~~~~-~~~~-------~~~~~~ll~~~~~~~ 121 (178)
-.+..+.+..+.+.. ...+ ..++..|+..||...
T Consensus 389 t~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~ 430 (1056)
T 1lsh_A 389 TRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANT 430 (1056)
T ss_dssp CHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccC
Confidence 233444444444322 1222 446778888888754
No 359
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=28.00 E-value=74 Score=20.92 Aligned_cols=18 Identities=17% Similarity=0.482 Sum_probs=8.5
Q ss_pred HhcCChhHHHHHHHHHHH
Q 036068 141 AISGNGDKALDMFSQMLR 158 (178)
Q Consensus 141 ~~~~~~~~a~~~~~~m~~ 158 (178)
.-..+...++.-|+++..
T Consensus 142 ~~ND~Ln~vl~kY~~~~~ 159 (186)
T 1oxz_A 142 QANDNLTQVINLYKQLVR 159 (186)
T ss_dssp HHHHHHHHHHHHHTTHHH
T ss_pred HhhHHHHHHHHHHHHHhc
Confidence 334444455555555544
No 360
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=27.93 E-value=28 Score=22.09 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=12.9
Q ss_pred hhHHHHHHHHhHhCCCC-CcHHHHHHHHHHh
Q 036068 53 FREALTLFQEMQTSNIM-GDEFTIVSILTAR 82 (178)
Q Consensus 53 ~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~ 82 (178)
+++|.+++..|++.-+. -.+..||.+|..+
T Consensus 74 y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~L 104 (152)
T 1rw2_A 74 FMKSIDCIRAFREEAIKFSEEQRFNNFLKAL 104 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 44555555555433221 1234455554443
No 361
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=27.32 E-value=47 Score=23.23 Aligned_cols=25 Identities=12% Similarity=0.223 Sum_probs=22.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHH
Q 036068 132 SWTTMIVGLAISGNGDKALDMFSQM 156 (178)
Q Consensus 132 ~~~~li~~~~~~~~~~~a~~~~~~m 156 (178)
.-|.+++.|...|+++.|.++++++
T Consensus 36 ~~n~l~R~FL~~gkl~AAr~l~~rl 60 (270)
T 3cqc_A 36 QGNAIMRKFLASKKHEAAKEVFVKI 60 (270)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHC
Confidence 3588999999999999999999975
No 362
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=26.61 E-value=3.4e+02 Score=24.12 Aligned_cols=35 Identities=6% Similarity=0.088 Sum_probs=19.5
Q ss_pred hcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccc
Q 036068 49 RVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANL 85 (178)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 85 (178)
..+++-.|.+++.++.+.. |+...|..++..+...
T Consensus 1296 ~~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~~l 1330 (1354)
T 3lxu_X 1296 AHGHYGRMYKYVVKLIEEK--RTRDHFVELAAINGAL 1330 (1354)
T ss_dssp HHTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHc
Confidence 4566666666666665553 4555555555544333
No 363
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=26.36 E-value=1.3e+02 Score=19.87 Aligned_cols=16 Identities=13% Similarity=-0.089 Sum_probs=7.7
Q ss_pred HHHHhcCChhHHHHHH
Q 036068 138 VGLAISGNGDKALDMF 153 (178)
Q Consensus 138 ~~~~~~~~~~~a~~~~ 153 (178)
...+..|+.+-+..++
T Consensus 141 ~~A~~~~~~~~v~~Ll 156 (256)
T 2etb_A 141 SLAACTKQWDVVTYLL 156 (256)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHH
Confidence 3344566665444333
No 364
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=26.29 E-value=1.5e+02 Score=22.47 Aligned_cols=53 Identities=11% Similarity=0.092 Sum_probs=36.9
Q ss_pred HHHHHHHHhccccchhhHHHHHHHHHHhCcccc--------hHHHHHHHH-HHHhcCChhhh
Q 036068 74 TIVSILTARANLRALDLGEWIKTYIDKNKVKND--------IFAGNALID-MYCICADVEKA 126 (178)
Q Consensus 74 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--------~~~~~~ll~-~~~~~~~~~~a 126 (178)
..+.+++.|.+.++...+..+++.+...+..|. ..+|.-.+. .++-.+++.+|
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A 239 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNA 239 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHH
Confidence 467788999999999999999999988765322 234443333 24456677665
No 365
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=25.29 E-value=1.3e+02 Score=21.08 Aligned_cols=37 Identities=14% Similarity=-0.068 Sum_probs=16.8
Q ss_pred CCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhC
Q 036068 66 SNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNK 102 (178)
Q Consensus 66 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 102 (178)
.|+.|...++.=++..+.+.=.++.+..+++.+...|
T Consensus 183 ~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g 219 (310)
T 3hzj_A 183 LNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEG 219 (310)
T ss_dssp HTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHC
T ss_pred cCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Confidence 3444444444444444444334444555555444444
No 366
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=25.19 E-value=68 Score=18.80 Aligned_cols=17 Identities=29% Similarity=0.188 Sum_probs=12.9
Q ss_pred HHhcCChhHHHHHHHHH
Q 036068 140 LAISGNGDKALDMFSQM 156 (178)
Q Consensus 140 ~~~~~~~~~a~~~~~~m 156 (178)
.++.|+|++|.+.+++-
T Consensus 28 ~Ak~g~fe~A~~~l~eA 44 (103)
T 1wcr_A 28 QAKQGDFAAAKAMMDQS 44 (103)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 46788888888877665
No 367
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=25.18 E-value=1.2e+02 Score=19.67 Aligned_cols=51 Identities=6% Similarity=-0.264 Sum_probs=39.3
Q ss_pred CCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhc
Q 036068 69 MGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCIC 120 (178)
Q Consensus 69 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 120 (178)
.|....++-++..++...-++++...++...+.|. .+..+|---++.+++.
T Consensus 108 ~~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaRe 158 (174)
T 2p22_A 108 VAKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQ 158 (174)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 44456778999999999999999999999999885 4566666666665553
No 368
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=25.16 E-value=1.2e+02 Score=21.57 Aligned_cols=28 Identities=7% Similarity=0.255 Sum_probs=12.6
Q ss_pred HHHHHHHHhCcccchHHHHHHHHHHHhc
Q 036068 93 WIKTYIDKNKVKNDIFAGNALIDMYCIC 120 (178)
Q Consensus 93 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 120 (178)
++++.+.+.|+.|...++..++..+.+.
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~ 236 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQ 236 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhh
Confidence 3444444445444444444444444433
No 369
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=25.14 E-value=38 Score=17.46 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=13.6
Q ss_pred ChhHHHHHHHHhHhCCCCCcH
Q 036068 52 RFREALTLFQEMQTSNIMGDE 72 (178)
Q Consensus 52 ~~~~a~~~~~~m~~~~~~~~~ 72 (178)
+++.|...|.+. +..++|++
T Consensus 34 d~~~A~~~F~~~-~~~IP~eA 53 (57)
T 2jp7_A 34 NYEVAIKGFQSS-MNGIPREA 53 (57)
T ss_dssp CSHHHHHHHHHS-TTTSCHHH
T ss_pred CHHHHHHHHHHH-HcCCCHHH
Confidence 678888888886 33455544
No 370
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=25.02 E-value=1.2e+02 Score=21.77 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=14.8
Q ss_pred HHHHHHHhCcccchHHHHHHHHHHHhcCChh
Q 036068 94 IKTYIDKNKVKNDIFAGNALIDMYCICADVE 124 (178)
Q Consensus 94 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 124 (178)
+++.+.+.|+.|...++..++..+.+.=.++
T Consensus 215 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~ 245 (334)
T 2qq8_A 215 LFAHFKKNNLTPDIYLIDWIFTLYSKSLPLD 245 (334)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHTTTTTTSCHH
T ss_pred HHHHHHHcCCCccchHHHHHHHHhcccCCHH
Confidence 4444455555555555555554444433333
No 371
>2qcx_A Transcriptional activator TENA; UP-DOWN bundle, hydrolase; HET: PF1; 2.20A {Bacillus subtilis} PDB: 1yak_A* 1yaf_A* 1to9_A* 1tyh_A
Probab=23.97 E-value=1.8e+02 Score=20.02 Aligned_cols=91 Identities=11% Similarity=0.005 Sum_probs=45.1
Q ss_pred CCCCChhHHHHHHHHHhhcCChhHHHHHH-----------HHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHH
Q 036068 32 MPERDYVLWTAMIDGYLRVNRFREALTLF-----------QEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDK 100 (178)
Q Consensus 32 m~~~~~~~~~~li~~~~~~~~~~~a~~~~-----------~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 100 (178)
-+.|....|...+...+..|++.+++..+ +++.+. ..|+ ..|...|+.|...+-.+.+..+.+.+.+
T Consensus 131 ~~~pat~aYt~~l~~~a~~g~~~~~laAl~pC~w~Y~~ig~~l~~~-~~~~-~~Y~~WI~~y~~~df~~~v~~~~~lld~ 208 (263)
T 2qcx_A 131 KPSPTAYSFTSHMYRSVLSGNFAEILAALLPCYWLYYEVGEKLLHC-DPGH-PIYQKWIGTYGGDWFRQQVEEQINRFDE 208 (263)
T ss_dssp CCCHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTC-CCCS-HHHHHHHHHHSSHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhc-cCCC-cHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 33456667777777777777766554332 122222 1244 6677778777765322333333333332
Q ss_pred hCcccchHHHHHHHHHHHhcCChh
Q 036068 101 NKVKNDIFAGNALIDMYCICADVE 124 (178)
Q Consensus 101 ~~~~~~~~~~~~ll~~~~~~~~~~ 124 (178)
....++......+...+.+.-+++
T Consensus 209 l~~~~s~~~~~~l~~~F~~a~~lE 232 (263)
T 2qcx_A 209 LAENSTEEVRAKMKENFVISSYYE 232 (263)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHH
Confidence 222234444445555554444333
No 372
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=23.29 E-value=1.7e+02 Score=19.35 Aligned_cols=17 Identities=6% Similarity=-0.138 Sum_probs=8.1
Q ss_pred HHHHHhcCChhHHHHHH
Q 036068 137 IVGLAISGNGDKALDMF 153 (178)
Q Consensus 137 i~~~~~~~~~~~a~~~~ 153 (178)
+...+..|+.+-+..++
T Consensus 144 L~~A~~~g~~~~v~~Ll 160 (260)
T 3jxi_A 144 LSLAACTNQPHIVHYLT 160 (260)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 33445566655444333
No 373
>3crd_A Raidd; caspase recruitment domain, apoptosis, homophilic interaction; NMR {Homo sapiens} SCOP: a.77.1.3
Probab=22.56 E-value=1e+02 Score=17.60 Aligned_cols=32 Identities=9% Similarity=0.204 Sum_probs=20.7
Q ss_pred hcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhcc
Q 036068 49 RVNRFREALTLFQEMQTSNIMGDEFTIVSILTARAN 84 (178)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 84 (178)
.....++|..+++.+...| | ..|..++.++.+
T Consensus 47 ~~t~~~k~~~Lld~L~~rG--~--~Af~~F~~aL~~ 78 (100)
T 3crd_A 47 QTTGLRKTMLLLDILPSRG--P--KAFDTFLDSLQE 78 (100)
T ss_dssp CSSSHHHHHHHHHHTTTSC--S--SCHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHHHHC--H--HHHHHHHHHHHh
Confidence 3445677888887777766 2 355666666654
No 374
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=22.48 E-value=1.6e+02 Score=20.29 Aligned_cols=85 Identities=12% Similarity=-0.037 Sum_probs=44.0
Q ss_pred HHHHHHHhcCChhHHHHHhccCCC----CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHH---HHHHHHHHhc
Q 036068 11 AIVSRYINRGQVDIARQCFDQMPE----RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEF---TIVSILTARA 83 (178)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~ 83 (178)
.-+...++.|+.+.+..++.+... +|..-.+ .+...+..|+.+-+ +.+.+.|..++.. -.+. +...+
T Consensus 26 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t-~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~-L~~A~ 99 (351)
T 3utm_A 26 DELLEAARSGNEEKLMALLTPLNVNCHASDGRKST-PLHLAAGYNRVRIV----QLLLQHGADVHAKDKGGLVP-LHNAC 99 (351)
T ss_dssp HHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCC-HHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTCCCH-HHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCC-HHHHHHHcCCHHHH----HHHHHcCCCCCccCCCCCcH-HHHHH
Confidence 345556678999999888886432 2332233 34444566775544 3444455444322 2222 33334
Q ss_pred cccchhhHHHHHHHHHHhCccc
Q 036068 84 NLRALDLGEWIKTYIDKNKVKN 105 (178)
Q Consensus 84 ~~~~~~~a~~~~~~m~~~~~~~ 105 (178)
..|+. ++++.+.+.|..+
T Consensus 100 ~~g~~----~iv~~Ll~~g~~~ 117 (351)
T 3utm_A 100 SYGHY----EVTELLLKHGACV 117 (351)
T ss_dssp HTTCH----HHHHHHHHTTCCT
T ss_pred HCCCH----HHHHHHHHCCCCC
Confidence 44554 3455555566544
No 375
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=22.18 E-value=1.1e+02 Score=16.92 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=17.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 036068 135 TMIVGLAISGNGDKALDMFSQMLR 158 (178)
Q Consensus 135 ~li~~~~~~~~~~~a~~~~~~m~~ 158 (178)
.+.+-|+..|+++.|..+|+..+.
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHH
Confidence 456777778888888888776653
No 376
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=22.13 E-value=1.8e+02 Score=19.40 Aligned_cols=54 Identities=7% Similarity=-0.053 Sum_probs=33.8
Q ss_pred hcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccc-----hhhHHHHHHHHHHhCc
Q 036068 49 RVNRFREALTLFQEMQTSNIMGDEFTIVSILTARANLRA-----LDLGEWIKTYIDKNKV 103 (178)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~m~~~~~ 103 (178)
+-.+.+.|+-.+.+|.+.| .|.-..=..++.+.-..|. ...|...++.....|.
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 4468899999999999998 7665555555555544443 2234444444455554
No 377
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=21.98 E-value=1.3e+02 Score=17.65 Aligned_cols=75 Identities=1% Similarity=-0.031 Sum_probs=38.8
Q ss_pred HhccccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhccchhhHHHHHHHHHhcCChhHHHHHHHHH
Q 036068 81 ARANLRALDLGEWIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQKDKFSWTTMIVGLAISGNGDKALDMFSQM 156 (178)
Q Consensus 81 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 156 (178)
-..+.|++++|.+.++.-.+.-. ---..-+.+|..-...+..+-...=+..=..|+.+..-..-.++..++|+++
T Consensus 29 ~~Ak~g~fe~A~~~l~eA~~~l~-~AH~~Qt~liq~Ea~g~~~~~slLlvHAQDhLMta~~~~~la~e~I~lyk~~ 103 (105)
T 2e2a_A 29 KAAENGDFAKADSLVVEAGSCIA-EAHSSQTGMLAREASGEELPYSVTMMHGQLHLMTTILLKDVIHHLIELYKRG 103 (105)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCcceeehhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35688889988888877655322 1233445566655554444322222222334444444444444555555543
No 378
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=21.88 E-value=1.6e+02 Score=18.73 Aligned_cols=49 Identities=10% Similarity=0.087 Sum_probs=27.0
Q ss_pred HHHHHHhcCChhHHHHHhccCCCC---ChhHHHHHHHHHhhcCChhHHHHHHH
Q 036068 12 IVSRYINRGQVDIARQCFDQMPER---DYVLWTAMIDGYLRVNRFREALTLFQ 61 (178)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~ 61 (178)
.+...++.|+.+.+..+++.-..+ |..-++.| ...+..|+.+-+..+++
T Consensus 28 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~ 79 (223)
T 2f8y_A 28 ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPL-HAAVSADAQGVFQILIR 79 (223)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHcCCHHHHHHHHH
Confidence 455667788888888888764332 22223333 33355566554444433
No 379
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=21.76 E-value=83 Score=21.57 Aligned_cols=79 Identities=6% Similarity=0.012 Sum_probs=43.7
Q ss_pred hhHHHHHhccCCC-----------CChhHHHHHHHHHhhcC---------ChhHHHHHHHHhHhCCCCC-cHHHHHHHHH
Q 036068 22 VDIARQCFDQMPE-----------RDYVLWTAMIDGYLRVN---------RFREALTLFQEMQTSNIMG-DEFTIVSILT 80 (178)
Q Consensus 22 ~~~a~~~~~~m~~-----------~~~~~~~~li~~~~~~~---------~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~ 80 (178)
.+.|..++.+|.- .-..-|..+-.++.+.| +.+-..++++-.++.|++- -...|+++|+
T Consensus 147 vetAiaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~aGv~~viPHIYssIID 226 (249)
T 3m0z_A 147 LETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSIID 226 (249)
T ss_dssp HHHHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHHHTCSCBCCBCCGGGBC
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHHcCCCeecccccceecc
Confidence 4566677777653 24455666777777665 2344455555555555321 1245555665
Q ss_pred HhccccchhhHHHHHHHHHH
Q 036068 81 ARANLRALDLGEWIKTYIDK 100 (178)
Q Consensus 81 ~~~~~~~~~~a~~~~~~m~~ 100 (178)
--.-.-+++++.+++..+++
T Consensus 227 k~TG~TrpedV~~ll~~~K~ 246 (249)
T 3m0z_A 227 KASGNTRPADVRQLLEMTKQ 246 (249)
T ss_dssp TTTCCBCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 44444556666666666544
No 380
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=21.71 E-value=1.5e+02 Score=18.24 Aligned_cols=84 Identities=12% Similarity=-0.042 Sum_probs=44.8
Q ss_pred HHHHHhcCChhHHHHHhccCCC----CChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHH--HHHHHHhcccc
Q 036068 13 VSRYINRGQVDIARQCFDQMPE----RDYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTI--VSILTARANLR 86 (178)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~ll~~~~~~~ 86 (178)
+...++.|+.+.+..+++.-.. +|..-++.|.. .+..|+.+- ++.+.+.|..++.... .+.+...+..|
T Consensus 9 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 83 (179)
T 3f6q_A 9 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHW-ACREGRSAV----VEMLIMRGARINVMNRGDDTPLHLAASHG 83 (179)
T ss_dssp HHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHH-HHHTTCHHH----HHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHH-HHHcCcHHH----HHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 3445678999999999987432 34444444443 455666544 3444455655543211 12333334445
Q ss_pred chhhHHHHHHHHHHhCccc
Q 036068 87 ALDLGEWIKTYIDKNKVKN 105 (178)
Q Consensus 87 ~~~~a~~~~~~m~~~~~~~ 105 (178)
+. ++.+.+.+.|..+
T Consensus 84 ~~----~~v~~Ll~~g~~~ 98 (179)
T 3f6q_A 84 HR----DIVQKLLQYKADI 98 (179)
T ss_dssp CH----HHHHHHHHTTCCT
T ss_pred CH----HHHHHHHHcCCCC
Confidence 54 3555556666554
No 381
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=21.56 E-value=90 Score=15.63 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=14.0
Q ss_pred ChhHHHHHHHHhHhCCCCCcH
Q 036068 52 RFREALTLFQEMQTSNIMGDE 72 (178)
Q Consensus 52 ~~~~a~~~~~~m~~~~~~~~~ 72 (178)
++..|.++++++.+.|-.|+.
T Consensus 8 Dv~RaiELle~lq~sgevp~~ 28 (53)
T 1zl8_A 8 DVQRILELMEHVQKTGEVNNA 28 (53)
T ss_dssp HHHHHHHHHHHHGGGSSSTHH
T ss_pred HHHHHHHHHHHHHHcCCCCcH
Confidence 566777777777777755553
No 382
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=21.05 E-value=2.3e+02 Score=20.21 Aligned_cols=35 Identities=11% Similarity=0.058 Sum_probs=19.7
Q ss_pred HHHHHHHHhCcccchHHHHHHHHHHHhcCChhhhc
Q 036068 93 WIKTYIDKNKVKNDIFAGNALIDMYCICADVEKAQ 127 (178)
Q Consensus 93 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 127 (178)
++++.+.+.|+.|...++..++..+.+.=.++.+.
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~l 264 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTI 264 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHH
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHH
Confidence 45555566666666666666666555544444443
No 383
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=20.98 E-value=2.2e+02 Score=19.98 Aligned_cols=93 Identities=12% Similarity=-0.026 Sum_probs=46.8
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCCC---ChhHHHHHHHHHhhcCChhHHHHHHHHhHhCCCCCcHHHHHHHHHH
Q 036068 5 DVISWTAIVSRYINRGQVDIARQCFDQMPER---DYVLWTAMIDGYLRVNRFREALTLFQEMQTSNIMGDEFTIVSILTA 81 (178)
Q Consensus 5 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 81 (178)
|..-++ .|...+..|+.+.+..+++.-..+ |..-++.| ...+..|+.+-+..+ .+.|..++...-.+.+..
T Consensus 17 d~~g~t-~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L-~~A~~~g~~~~v~~L----l~~g~~~~~~~g~t~L~~ 90 (364)
T 3ljn_A 17 DDENME-KIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTAL-HLACKFGCVDTAKYL----ASVGEVHSLWHGQKPIHL 90 (364)
T ss_dssp CHHHHH-HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHHCCHHHHHHH----HHHCCCCCCBTTBCHHHH
T ss_pred CCCCCC-HHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHH-HHHHHcCCHHHHHHH----HHCCCCccccCCCCHHHH
Confidence 333334 556666789999998888763332 33333333 333555665544433 333333332111223334
Q ss_pred hccccchhhHHHHHHHHHHhCc
Q 036068 82 RANLRALDLGEWIKTYIDKNKV 103 (178)
Q Consensus 82 ~~~~~~~~~a~~~~~~m~~~~~ 103 (178)
.+..|+.+-+..+++.....|.
T Consensus 91 A~~~g~~~~v~~Ll~~~~~~~~ 112 (364)
T 3ljn_A 91 AVMANKTDLVVALVEGAKERGQ 112 (364)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHhccccCC
Confidence 4455666666666555443343
No 384
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.64 E-value=1.7e+02 Score=18.36 Aligned_cols=53 Identities=6% Similarity=0.086 Sum_probs=37.9
Q ss_pred ChhHHHHHHHHhHhCCCCCcHHHHHHHHHHhccccchhhHHHHHHHHHHhCcccc
Q 036068 52 RFREALTLFQEMQTSNIMGDEFTIVSILTARANLRALDLGEWIKTYIDKNKVKND 106 (178)
Q Consensus 52 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 106 (178)
..+.+..+++++.+.|..-|..--..++....+.| .....+-..+.+.|+..+
T Consensus 45 ~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~~~ 97 (159)
T 3c1d_A 45 TAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGISRE 97 (159)
T ss_dssp CHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCCHH
T ss_pred CHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCCHH
Confidence 45667788888888888767666667777766543 345677888888898653
No 385
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=20.07 E-value=60 Score=20.25 Aligned_cols=70 Identities=10% Similarity=0.051 Sum_probs=37.1
Q ss_pred hHHHHHHHHHhhcCChhHHHHHHHHhHh-CCCCC---cHHHHHHHHHHhccccchhhHHHHHHHHHH-hCcccchHHHHH
Q 036068 38 VLWTAMIDGYLRVNRFREALTLFQEMQT-SNIMG---DEFTIVSILTARANLRALDLGEWIKTYIDK-NKVKNDIFAGNA 112 (178)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~ 112 (178)
.....++..+... ++.++++.++..+ .|+.| ++.++.-+++...+.|-++.. +.+..|.+ ++ ..+++|+.
T Consensus 41 ~~~dg~iq~fe~t--~Elawk~~k~~L~~~g~~~~~~~~~s~rd~~r~a~~~GlI~d~-~~w~~m~~~RN--~tvH~Y~e 115 (146)
T 1jog_A 41 TLIAGAIQKFEFV--YELSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDM-SKWVAYRDMRN--ITSHTYDQ 115 (146)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHTCSCCCTTSCCHHHHHHHHHHTTSCSCH-HHHHHHHHHHT--TGGGTTSH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHcCCCCcH-HHHHHHHHHhh--HhcccccH
Confidence 3444455544432 4556666665443 45443 256677777777777777666 34444443 33 23444443
Done!