BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036069
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 80 EGNACMVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSK 137
+G + +AA G +++++L+ + PN +D P+H AA+ GH++ V+ LLSK
Sbjct: 36 DGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLSK 92
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 80 EGNACMVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSK 137
+G + +AA G +++++L+ + PN +D P+H AA+ GH++ V+ LLSK
Sbjct: 69 DGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLSK 125
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 85 MVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSK 137
++ AA G ++ L+ N PN D P+H AA+ GH++ V+ LLSK
Sbjct: 8 LIEAAENGNKDRVKDLLE-NGADPNASDSDGRTPLHYAAENGHKEIVKLLLSK 59
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 80 EGNACMVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSK 137
+G + HAA G +++++L+ ++ N +D P+H AA+ GH++ V+ L+SK
Sbjct: 36 DGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISK 92
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 80 EGNACMVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSK 137
+G + HAA G +++++L+ ++ N +D P+H AA+ GH++ V+ L+SK
Sbjct: 69 DGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISK 125
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 85 MVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSK 137
++ AA G ++ L+ ++ N D P+H AA+ GH++ V+ L+SK
Sbjct: 8 LIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISK 59
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 76 WVSNEGNACMVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
W S +GN + +AA G ++ ++ L+ ++ N R K P+H AA+ GH + V+ LL
Sbjct: 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLL 62
Query: 136 SK 137
+K
Sbjct: 63 AK 64
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 78 SNEGNACMVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSK 137
S +GN + AA G ++++++L+ ++ N R K P H A + GH + V+ LL
Sbjct: 39 SKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLAKKNGHHEIVK-LLDA 96
Query: 138 TTAHLDGHDWST 149
A ++ W +
Sbjct: 97 KGADVNARSWGS 108
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 85 MVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
++ AA G+ + ILM ++ N D+ L P+H AAQLGH + V LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NALDEDGLTPLHLAAQLGHLEIVEVLL 67
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
AA G +++E+L++Y ++ N D + P+H AA GH + V LL
Sbjct: 54 AAQLGHLEIVEVLLKYGADV-NAEDNFGITPLHLAAIRGHLEIVEVLL 100
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 61/129 (47%), Gaps = 11/129 (8%)
Query: 8 DSVMQVTRYILKNDWKDLEEYIMSKTSNTLTDKITGGLSIFDLIVNSDAPPMFLDKLVSK 67
D +++ RY+L+ +DLE+ D ++ F + K ++K
Sbjct: 21 DGDLEMVRYLLEWTEEDLEDA---------EDTVSAADPEFCHPLCQCPKCAPAQKRLAK 71
Query: 68 VHQNFLQEWVSNEGNACMVH-AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLG 126
V + L V+++ + +H AA G++ LI +L+++ N R+ + +P+H A Q G
Sbjct: 72 VPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQG 130
Query: 127 HRDTVRYLL 135
H V+ LL
Sbjct: 131 HFQVVKCLL 139
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSK 137
AA G +++++L+ + PN +D P+H AA+ GH++ V+ LLS+
Sbjct: 44 AAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLLSQ 92
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSK 137
AA G +++++L+ + PN +D P+H AA+ GH++ V+ LLS+
Sbjct: 77 AAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLLSQ 125
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 85 MVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSK 137
++ AA G ++ L+ ++ N D P+H AA+ GH++ V+ LLS+
Sbjct: 8 LIEAAENGNKDRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLLLSQ 59
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
AA G +++E+L++Y ++ N +D L P+H AA GH + V LL
Sbjct: 87 AADNGHLEIVEVLLKYGADV-NAQDAYGLTPLHLAADRGHLEIVEVLL 133
Score = 32.7 bits (73), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 79 NEGNACMVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
++G+ + AA G +++E+L+++ ++ N RD P+H AA GH + V LL
Sbjct: 45 DQGSTPLHLAAWIGHPEIVEVLLKHGADV-NARDTDGWTPLHLAADNGHLEIVEVLL 100
Score = 30.8 bits (68), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 85 MVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
++ AA G+ + ILM ++ N D P+H AA +GH + V LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NAHDDQGSTPLHLAAWIGHPEIVEVLL 67
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 11/112 (9%)
Query: 71 NFLQEWVSNEGNACMVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDT 130
NF Q C V + + ++ E+L+R N+ N ++K + P+H AA+ H D
Sbjct: 204 NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHND- 261
Query: 131 VRYLLSKTTAHLDGHD--------WSTLLKDLINCNLFGKYYSAEPYIVILQ 174
V +L K A ++ D + L L C L Y S +P I+ LQ
Sbjct: 262 VMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGS-DPSIISLQ 312
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 86 VHAATG-GKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
+H A G + +++++L+++ ++ + +DK L+P+H A GH + LL
Sbjct: 62 LHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELLL 111
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 85 MVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSKTTAHLDG 144
++ AA G+ + ILM ++ N +DK P+H AA+ GH + V LL K A ++
Sbjct: 6 LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNA 63
Query: 145 HD 146
D
Sbjct: 64 QD 65
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 92 GKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
G ++IE+L++Y ++ N DKS P+H AA GH + V LL
Sbjct: 58 GHLEIIEVLLKYAADV-NASDKSGWTPLHLAAYRGHLEIVEVLL 100
Score = 33.1 bits (74), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
AA G +++E+L++Y ++ N D P+H AA+ GH + V LL
Sbjct: 87 AAYRGHLEIVEVLLKYGADV-NAMDYQGYTPLHLAAEDGHLEIVEVLL 133
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 79 NEGNACMVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSK 137
++G + +AA G +++++L+ ++ N +D P+H AA+ GH++ V+ L+SK
Sbjct: 35 SDGRTPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKLLISK 92
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 79 NEGNACMVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSK 137
++G + +AA G +++++L+ ++ N +D P+H AA+ GH++ V+ L+SK
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKLLISK 125
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 85 MVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSK 137
++ AA G ++ L+ ++ N D P+H AA+ GH++ V+ L+SK
Sbjct: 8 LIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHYAAKEGHKEIVKLLISK 59
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 81 GNACMVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSKTTA 140
GNA + AA G ++ L+ + ++ N+ D LP+H AA+ GH V +L+ T +
Sbjct: 70 GNAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Query: 141 HLDGH 145
++ GH
Sbjct: 129 NV-GH 132
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 85 MVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
++ AA G+ + ILM ++ N D S L P+H AA GH + V LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLL 67
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
AAT G +++E+L+++ ++ N D P+H AA +GH + V LL
Sbjct: 54 AATYGHLEIVEVLLKHGADV-NAIDIXGSTPLHLAALIGHLEIVEVLL 100
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
AA G +++E+L+++ ++ N D P+H AA +GH + V LL
Sbjct: 87 AALIGHLEIVEVLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLL 133
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 85 MVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
++ AA G+ + ILM ++ N D S L P+H AA GH + V LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLL 67
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
AAT G +++E+L+++ ++ N D P+H AA +GH + V LL
Sbjct: 54 AATYGHLEIVEVLLKHGADV-NAIDIMGSTPLHLAALIGHLEIVEVLL 100
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
AA G +++E+L+++ ++ N D P+H AA +GH + V LL
Sbjct: 87 AALIGHLEIVEVLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLL 133
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 34.3 bits (77), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSKTTAHLDGHD 146
AA G +++E+L++ ++ N +DK P+H AA+ GH + V LL K A ++ D
Sbjct: 87 AAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAQD 143
Score = 33.5 bits (75), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
AA G +++E+L++ ++ N +DK P+H AA+ GH + V LL
Sbjct: 54 AAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLL 100
Score = 33.5 bits (75), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 85 MVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
++ AA G+ + ILM ++ N +DK P+H AA+ GH + V LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLL 67
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 33.9 bits (76), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSKTTAHLDGHD 146
AA G +++E+L++ ++ N +DK P+H AA+ GH + V LL K A ++ D
Sbjct: 75 AAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAQD 131
Score = 33.5 bits (75), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
AA G +++E+L++ ++ N +DK P+H AA+ GH + V LL
Sbjct: 42 AAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLL 88
Score = 33.5 bits (75), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 85 MVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
++ AA G+ + ILM ++ N +DK P+H AA+ GH + V LL
Sbjct: 6 LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLL 55
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 33.9 bits (76), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
AA G +++E+L+R ++ N D + P+H AA LGH + V LL
Sbjct: 42 AAAVGHLEIVEVLLRNGADV-NAVDTNGTTPLHLAASLGHLEIVEVLL 88
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
AA+ G +++E+L++Y ++ N +D + + P++ AA GH + V LL
Sbjct: 75 AASLGHLEIVEVLLKYGADV-NAKDATGITPLYLAAYWGHLEIVEVLL 121
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 85 MVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
++ AA G+ + ILM N N D P+H AA +GH + V LL
Sbjct: 6 LLEAARAGQDDEVRILMA-NGADANAYDHYGRTPLHMAAAVGHLEIVEVLL 55
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 33.9 bits (76), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSKTTAHLDGHD- 146
AA G+ +++E+L++ ++ N D + + P+H AA GH + V LL K A ++ +D
Sbjct: 46 AAANGQLEIVEVLLKNGADV-NASDSAGITPLHLAAYDGHLEIVEVLL-KHGADVNAYDR 103
Query: 147 --WSTL 150
W+ L
Sbjct: 104 AGWTPL 109
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 33.9 bits (76), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 14/92 (15%)
Query: 58 PMFLDKLVSKVHQN---FLQEWVSN----------EGNACMVHAATGGKSKLIEILMRYN 104
P F+D + ++ + ++ W+ N G + + A G+S ++E+L+
Sbjct: 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG 62
Query: 105 PNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLS 136
+ NV ++ P+H AA GHRD V+ LL
Sbjct: 63 ARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQ 93
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 33.9 bits (76), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSK 137
AA G + ++++L+ N N PN+ + P+H AA+ GH +TV LL K
Sbjct: 87 AARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEK 135
Score = 33.1 bits (74), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 92 GKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
G KL++ L+++ ++ N + K P+H+AAQ GH D V LL
Sbjct: 322 GNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTLLL 364
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
Query: 104 NPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
+PN+ NV+ ++ P+H AA+ GH + +YLL
Sbjct: 39 SPNVSNVKVET---PLHMAARAGHTEVAKYLL 67
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 74 QEWVSNEGNACMVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRY 133
Q ++ +G + AA GK ++ E+L+ + + PN K+ L P+H A + D V+
Sbjct: 139 QACMTKKGFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKL 197
Query: 134 LLSK 137
LL +
Sbjct: 198 LLPR 201
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 70 QNFLQEW----VSNEGNACMVH-AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQ 124
+N LQ VSN +H AA G +++ + L++ + N + K P+H AA+
Sbjct: 31 KNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAAR 89
Query: 125 LGHRDTVRYLL 135
+GH + V+ LL
Sbjct: 90 IGHTNMVKLLL 100
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGH 127
AA G ++++ +L+ N N+ +KS L P+H AQ GH
Sbjct: 252 AAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGH 290
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSK 137
AA + ++ L++Y + N + P+H AAQ GH + V LLSK
Sbjct: 219 AAKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLSK 267
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 33.9 bits (76), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLS 136
A G+S ++E+L+ + NV ++ P+H AA GHRD V+ LL
Sbjct: 41 ACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQ 88
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 33.9 bits (76), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSKTTAHLDGHD 146
AA G +++E+L++ ++ N +DK P+H AA+ GH + V LL K A ++ D
Sbjct: 75 AAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAQD 131
Score = 33.5 bits (75), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
AA G +++E+L++ ++ N +DK P+H AA+ GH + V LL
Sbjct: 42 AAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLL 88
Score = 33.1 bits (74), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 85 MVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
++ AA G+ + ILM ++ N +DK P+H AA+ GH + V LL
Sbjct: 6 LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLL 55
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 33.5 bits (75), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 82 NACMVHAAT-GGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSK 137
N+ +H AT G ++ LM+Y + P++ D IH AAQ GH V YL++K
Sbjct: 76 NSTPLHWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAK 131
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 33.5 bits (75), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 79 NEGNACMVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
N+G + AA+ G +++E+L++ ++ N D + + P+H AA GH + V LL
Sbjct: 45 NDGYTPLHLAASNGHLEIVEVLLKNGADV-NASDLTGITPLHLAAATGHLEIVEVLL 100
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
AA G +++E+L+++ ++ N D P+H AA+ GH + V LL
Sbjct: 87 AAATGHLEIVEVLLKHGADV-NAYDNDGHTPLHLAAKYGHLEIVEVLL 133
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 85 MVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSKTTAHLDG 144
++ AA G+ + ILM ++ N D P+H AA GH + V LL K A ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NATDNDGYTPLHLAASNGHLEIVEVLL-KNGADVNA 75
Query: 145 HDWSTL 150
D + +
Sbjct: 76 SDLTGI 81
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 33.1 bits (74), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 81 GNACMVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSKTTA 140
G A + AA G+ ++ L+ + ++ N+ D LP+H AA+ GH V +L+ T +
Sbjct: 70 GFAVIHDAARAGQLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Query: 141 HLDGH 145
++ GH
Sbjct: 129 NV-GH 132
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 108 PNVRDKSKLLPIHKAAQLGHRDTVRYLLS 136
P+++D++ IH AA+ G DT++ LL
Sbjct: 63 PDLKDRTGFAVIHDAARAGQLDTLQTLLE 91
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 33.1 bits (74), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
AA G +++E+L++Y ++ N D + P+H AA GH + V LL
Sbjct: 87 AAMTGHLEIVEVLLKYGADV-NAFDMTGSTPLHLAADEGHLEIVEVLL 133
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 77 VSNEGNACMVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
V N G + AA G +++E+L+++ ++ + D P+H AA GH + V LL
Sbjct: 43 VDNTGLTPLHLAAVSGHLEIVEVLLKHGADV-DAADVYGFTPLHLAAMTGHLEIVEVLL 100
Score = 30.8 bits (68), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 85 MVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSKTTAHLDG 144
++ AA G+ + IL+ ++ N D + L P+H AA GH + V LL K A +D
Sbjct: 18 LLEAARAGQDDEVRILIANGADV-NAVDNTGLTPLHLAAVSGHLEIVEVLL-KHGADVDA 75
Query: 145 HD 146
D
Sbjct: 76 AD 77
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 33.1 bits (74), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSKTTAHLD 143
AA+ G KLIE+L + N +DK P+ A GH D L+ K A D
Sbjct: 147 AASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 202
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 77 VSNEGNACMVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYL-- 134
++N+G C+ H A G K + + N ++DK +P+H+AA +G + L
Sbjct: 103 ITNQGVTCL-HLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG 161
Query: 135 LSKTTAHL-DGHDWSTLLKDL 154
L K+ + D W+ L L
Sbjct: 162 LGKSAVNWQDKQGWTPLFHAL 182
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 33.1 bits (74), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSKTTAHLD 143
AA+ G KLIE+L + N +DK P+ A GH D L+ K A D
Sbjct: 147 AASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 202
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 77 VSNEGNACMVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYL-- 134
++N+G C+ H A G K + + N ++DK +P+H+AA +G + L
Sbjct: 103 ITNQGVTCL-HLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG 161
Query: 135 LSKTTAHL-DGHDWSTLLKDL 154
L K+ + D W+ L L
Sbjct: 162 LGKSAVNWQDKQGWTPLFHAL 182
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 33.1 bits (74), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSKTTAHLD 143
AA+ G KLIE+L + N +DK P+ A GH D L+ K A D
Sbjct: 147 AASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 202
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 77 VSNEGNACMVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYL-- 134
++N+G C+ H A G K + + N ++DK +P+H+AA +G + L
Sbjct: 103 ITNQGVTCL-HLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG 161
Query: 135 LSKTTAHL-DGHDWSTLLKDL 154
L K+ + D W+ L L
Sbjct: 162 LGKSAVNWQDKQGWTPLFHAL 182
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 32.7 bits (73), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 85 MVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
++ AA G+ + ILM ++ N RD + P+H AA GH + V LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NARDFTGWTPLHLAAHFGHLEIVEVLL 67
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSKTTAHLDGHD 146
AA G +++E+L++ ++ N D P+H AA+ GH + V LL K A ++ D
Sbjct: 87 AARRGHLEIVEVLLKNGADV-NASDSHGFTPLHLAAKRGHLEIVEVLL-KNGADVNAQD 143
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
AA G +++E+L++ ++ N +D + P+H AA+ GH + V LL
Sbjct: 54 AAHFGHLEIVEVLLKNGADV-NAKDSLGVTPLHLAARRGHLEIVEVLL 100
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
AA G +++E+L+++ ++ N +D P+H AA GH + V LL
Sbjct: 87 AADNGHLEIVEVLLKHGADV-NAKDYEGFTPLHLAAYDGHLEIVEVLL 133
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
AA G +++E+L++Y ++ N D P+H AA GH + V LL
Sbjct: 54 AAKTGHLEIVEVLLKYGADV-NAWDNYGATPLHLAADNGHLEIVEVLL 100
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 85 MVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
++ AA G+ + ILM ++ N D P+H AA+ GH + V LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NATDWLGHTPLHLAAKTGHLEIVEVLL 67
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
AA G +++E+L++ ++ N D + P+H AA +GH + V LL
Sbjct: 87 AADRGHLEVVEVLLKNGADV-NANDHNGFTPLHLAANIGHLEIVEVLL 133
Score = 29.6 bits (65), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSKTTAHLDGHD 146
AA G +++E+L++ ++ N D + P+H AA GH + V LL K A ++ +D
Sbjct: 54 AAYFGHLEIVEVLLKNGADV-NADDSLGVTPLHLAADRGHLEVVEVLL-KNGADVNAND 110
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 85 MVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
++ AA G+ + ILM ++ N D P+H AA GH + V LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NASDHVGWTPLHLAAYFGHLEIVEVLL 67
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 99 ILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSKT 138
+L R L +VRD LP+ A +LGHRD RYL +
Sbjct: 96 VLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAA 134
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 85 MVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLS 136
++ AA G+ + ILM ++ +DK+ P+H AA+ GH + V+ LL
Sbjct: 10 LLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLE 60
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 99 ILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSKT 138
+L R L +VRD LP+ A +LGHRD RYL +
Sbjct: 96 VLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAA 134
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLS 136
AA G +++E+L+++ ++ N RD P+H AA +GH + V LL
Sbjct: 54 AAKRGHLEIVEVLLKHGADV-NARDIWGRTPLHLAATVGHLEIVEVLLE 101
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 85 MVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
++ A G+ + ILM ++ N D + + P+H AA+ GH + V LL
Sbjct: 18 LLEATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLL 67
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 85 MVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSKTTAHLDG 144
++ AA G+ + ILM ++ N D P+H AA++GH + V LL K A ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NAEDTYGDTPLHLAARVGHLEIVEVLL-KNGADVNA 75
Query: 145 HDWS 148
D+S
Sbjct: 76 LDFS 79
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
AA G +++E+L++Y ++ N D P+H AA GH + V LL
Sbjct: 87 AAKRGHLEIVEVLLKYGADV-NADDTIGSTPLHLAADTGHLEIVEVLL 133
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
AA G +++E+L++ ++ N D S P+H AA+ GH + V LL
Sbjct: 54 AARVGHLEIVEVLLKNGADV-NALDFSGSTPLHLAAKRGHLEIVEVLL 100
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 85 MVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
++ AA G+ + ILM ++ +DK+ P+H AA+ GH + V+ LL
Sbjct: 28 LLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLL 77
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
AA G +++E+L++ ++ N +D + + P+H AA GH + V LL
Sbjct: 87 AAHFGHLEIVEVLLKNGADV-NAKDDNGITPLHLAANRGHLEIVEVLL 133
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 85 MVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSKTTAHLDG 144
++ AA G+ + ILM ++ N D P+H AA GH + V LL K A ++
Sbjct: 18 LLEAARAGRDDEVRILMANGADV-NAADVVGWTPLHLAAYWGHLEIVEVLL-KNGADVNA 75
Query: 145 HD 146
+D
Sbjct: 76 YD 77
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
AA G +++E+L++ ++ N D P+H AA GH + V LL
Sbjct: 54 AAYWGHLEIVEVLLKNGADV-NAYDTLGSTPLHLAAHFGHLEIVEVLL 100
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
AA G +++E+L+++ ++ N DK P+H AA GH + V LL
Sbjct: 54 AAIKGHLEIVEVLLKHGADV-NAADKMGDTPLHLAALYGHLEIVEVLL 100
Score = 30.8 bits (68), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 85 MVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
++ AA G+ + ILM ++ N D S P+H AA GH + V LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NAEDDSGKTPLHLAAIKGHLEIVEVLL 67
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
AA G +++E+L++ ++ N D P+H AA GH + V LL
Sbjct: 87 AALYGHLEIVEVLLKNGADV-NATDTYGFTPLHLAADAGHLEIVEVLL 133
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 77 VSNEGNACMVH-AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
V + VH AA G +++L+ + ++ NV D + LPIH A Q GH V +L
Sbjct: 69 VQDTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLA 127
Query: 136 SKTTAH 141
+++ H
Sbjct: 128 AESDLH 133
Score = 30.4 bits (67), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 108 PNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
PNV+D S P+H AA+ G DT++ L+
Sbjct: 67 PNVQDTSGTSPVHDAARTGFLDTLKVLV 94
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 81 GNACMVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSKTTA 140
G A + AA G ++ L+ + ++ N+ D LP+H AA+ GH V +L+ T +
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Query: 141 HLDGH 145
++ GH
Sbjct: 129 NV-GH 132
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 108 PNVRDKSKLLPIHKAAQLGHRDTVRYLLS 136
P+++D++ IH AA+ G DT++ LL
Sbjct: 63 PDLKDRTGFAVIHDAARAGFLDTLQTLLE 91
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 77 VSNEGNACMVH-AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
V + VH AA G +++L+ + ++ NV D + LPIH A Q GH V +L
Sbjct: 63 VQDTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLA 121
Query: 136 SKTTAH 141
+++ H
Sbjct: 122 AESDLH 127
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 108 PNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
PNV+D S P+H AA+ G DT++ L+
Sbjct: 61 PNVQDTSGTSPVHDAARTGFLDTLKVLV 88
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 85 MVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSKTTAHLDG 144
++ AA G+ + ILM ++ N D + P+H AA GH + V LL K A +D
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NAADNTGTTPLHLAAYSGHLEIVEVLL-KHGADVDA 75
Query: 145 HD 146
D
Sbjct: 76 SD 77
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 79 NEGNACMVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
N G + AA G +++E+L+++ ++ + D P+H AA GH + V LL
Sbjct: 45 NTGTTPLHLAAYSGHLEIVEVLLKHGADV-DASDVFGYTPLHLAAYWGHLEIVEVLL 100
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 81 GNACMVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSKTTA 140
G A + AA G ++ L+ + ++ N+ D LP+H AA+ GH V +L+ T +
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Query: 141 HLDGH 145
++ GH
Sbjct: 129 NV-GH 132
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 108 PNVRDKSKLLPIHKAAQLGHRDTVRYLLS 136
P+++D++ IH AA+ G DT++ LL
Sbjct: 63 PDLKDRTGFAVIHDAARAGFLDTLQTLLE 91
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLS 136
AA G +++E+L+++ ++ N D P+H AA +GH + V LL
Sbjct: 54 AAKRGHLEIVEVLLKHGADV-NASDSWGRTPLHLAATVGHLEIVEVLLE 101
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 85 MVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
++ A G+ + ILM ++ N D + + P+H AA+ GH + V LL
Sbjct: 18 LLEATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLL 67
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 108 PNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
PNV+D S P+H AA+ G DT++ L+
Sbjct: 69 PNVQDASGTSPVHDAARTGFLDTLKVLV 96
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSKTTAH 141
AA G +++L+ + ++ N D + LPIH A + GH V +L ++ H
Sbjct: 83 AARTGFLDTLKVLVEHGADV-NALDSTGSLPIHLAIREGHSSVVSFLAPESDLH 135
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 30.8 bits (68), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 108 PNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
PNV+D S P+H AA+ G DT++ L+
Sbjct: 67 PNVQDASGTSPVHDAARTGFLDTLKVLV 94
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 77 VSNEGNACMVH-AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
V + VH AA G +++L+ + ++ N D + LPIH A + GH V +L
Sbjct: 69 VQDASGTSPVHDAARTGFLDTLKVLVEHGADV-NALDSTGSLPIHLAIREGHSSVVSFLA 127
Query: 136 SKTTAH 141
++ H
Sbjct: 128 PESDLH 133
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 85 MVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
++ AA G+ + ILM ++ N DK L P+H AA H + V LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NAEDKVGLTPLHLAAMNDHLEIVEVLL 67
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 85 MVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
++ AA G+ + ILM ++ N D S P+H AA GH + V LL
Sbjct: 18 LLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLL 67
Score = 30.0 bits (66), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSKTTAHLDGHD 146
AA G +++E+L++ ++ N D P+H AA GH + V LL K A ++ D
Sbjct: 87 AALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLL-KNGADVNAQD 143
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 73 LQEWVSNEGNACMVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVR 132
+ + ++ G + A+ G +E L++ N + PNV+D + P+H+A GH V
Sbjct: 2 IDPFTNHRGETLLHIASIKGDIPSVEYLLQ-NGSDPNVKDHAGWTPLHEACNHGHLKVVE 60
Query: 133 YLL 135
LL
Sbjct: 61 LLL 63
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLS 136
A G K++E+L+++ L N P+H AA+ GH D V+ LLS
Sbjct: 50 ACNHGHLKVVELLLQHKA-LVNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 85 MVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
++ A G+ + ILM ++ N D + + P+H AA+ GH + V LL
Sbjct: 18 LLEATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLL 67
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLS 136
AA G +++E+L+++ ++ N D P+H AA +GH + V LL
Sbjct: 54 AAKRGHLEIVEVLLKHGADV-NASDIWGRTPLHLAATVGHLEIVEVLLE 101
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 80 EGNACMVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSKTT 139
EG+ C+ AA G ++++ L+ N +D P+ A + H D V+ LLSK +
Sbjct: 76 EGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGS 135
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 79 NEGNACMVHAATGGKSKLIEILMRYNPNLP--NVRDKSKLLPIHKAAQLGHRDTVRYLLS 136
NE N C+ AA G + EIL+ +L N+ S P+H AA+ D V LS
Sbjct: 142 NEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDS---PLHIAARENRYDCVVLFLS 198
Query: 137 KTT 139
+ +
Sbjct: 199 RDS 201
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 30.0 bits (66), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLS 136
AA G +++++L+ ++ N +DK+ P+H AA+ GH + V+ LL
Sbjct: 9 AARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 56
Score = 30.0 bits (66), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLS 136
AA G +++++L+ ++ N +DK+ P+H AA+ GH + V+ LL
Sbjct: 42 AARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 89
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLS 136
AA G +++++L+ ++ N +DK+ P+H AA+ GH + V+ LL
Sbjct: 9 AARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 56
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLS 136
AA G +++++L+ ++ N +DK+ P+H AA+ GH + V+ LL
Sbjct: 42 AARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 88 AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLS 136
AA G +++++L+ ++ N +DK+ P+H AA+ GH + V+ LL
Sbjct: 75 AARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 122
>pdb|3LLS|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase From Mycobacterium Tuberculosis
pdb|3LLS|B Chain B, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase From Mycobacterium Tuberculosis
Length = 475
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 116 LLPIHKAAQLGHRDTVRYLLSKTTAHLDGHDWSTLLKD 153
L P K A G T+R+LLS +A++DG +S D
Sbjct: 184 LSPDAKPAATGLESTMRFLLSAKSAYVDGQVFSVGADD 221
>pdb|4FW8|A Chain A, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
pdb|4FW8|B Chain B, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
pdb|4FW8|C Chain C, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
pdb|4FW8|D Chain D, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
Length = 454
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 116 LLPIHKAAQLGHRDTVRYLLSKTTAHLDGHDWSTLLKD 153
L P K A G T+R+LLS +A++DG +S D
Sbjct: 163 LSPDAKPAATGLESTMRFLLSAKSAYVDGQVFSVGADD 200
>pdb|3V1T|C Chain C, Crystal Structure Of A Putative Ketoacyl Reductase (Fabg4)
From Mycobacterium Tuberculosis H37rv At 1.9 Angstrom
Resolution
pdb|3V1T|D Chain D, Crystal Structure Of A Putative Ketoacyl Reductase (Fabg4)
From Mycobacterium Tuberculosis H37rv At 1.9 Angstrom
Resolution
pdb|3V1U|A Chain A, Crystal Structure Of A Beta-Ketoacyl Reductase Fabg4 From
Mycobacterium Tuberculosis H37rv Complexed With Nad+ And
Hexanoyl-Coa At 2.5 Angstrom Resolution
Length = 462
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 116 LLPIHKAAQLGHRDTVRYLLSKTTAHLDGHDWSTLLKD 153
L P K A G T+R+LLS +A++DG +S D
Sbjct: 171 LSPDAKPAATGLESTMRFLLSAKSAYVDGQVFSVGADD 208
>pdb|3Q6I|A Chain A, Crystal Structure Of Fabg4 And Coenzyme Binary Complex
pdb|3Q6I|B Chain B, Crystal Structure Of Fabg4 And Coenzyme Binary Complex
pdb|3Q6I|C Chain C, Crystal Structure Of Fabg4 And Coenzyme Binary Complex
pdb|3Q6I|D Chain D, Crystal Structure Of Fabg4 And Coenzyme Binary Complex
Length = 446
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 116 LLPIHKAAQLGHRDTVRYLLSKTTAHLDGHDWSTLLKD 153
L P K A G T+R+LLS +A++DG +S D
Sbjct: 155 LSPDAKPAATGLESTMRFLLSAKSAYVDGQVFSVGADD 192
>pdb|3M1L|A Chain A, Crystal Strucutre Of A C-Terminal Trunacted Mutant Of A
Putative Ketoacyl Reductase (Fabg4) From Mycobacterium
Tuberculosis H37rv At 2.5 Angstrom Resolution
pdb|3M1L|B Chain B, Crystal Strucutre Of A C-Terminal Trunacted Mutant Of A
Putative Ketoacyl Reductase (Fabg4) From Mycobacterium
Tuberculosis H37rv At 2.5 Angstrom Resolution
Length = 432
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 116 LLPIHKAAQLGHRDTVRYLLSKTTAHLDGHDWSTLLKD 153
L P K A G T+R+LLS +A++DG +S D
Sbjct: 147 LSPDAKPAATGLESTMRFLLSAKSAYVDGQVFSVGADD 184
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 86 VHAATG-GKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
+H A G + ++E L+++ ++ + +DK L+P+H A GH + L+
Sbjct: 48 LHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLV 97
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 95 KLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
+++E+L+++ ++ N D P+H AA GH + V LL
Sbjct: 61 EIVEVLLKHGADV-NAHDNDGSTPLHLAALFGHLEIVEVLL 100
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 86 VHAATG-GKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
+H A G + ++E L+++ ++ + +DK L+P+H A GH + L+
Sbjct: 50 LHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLV 99
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 86 VHAATG-GKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
+H A G + ++E L+++ ++ + +DK L+P+H A GH + L+
Sbjct: 46 LHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLV 95
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 81 GNACMVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSKTTA 140
G A + AA G ++ L+ ++ N+ D LP+H AA+ GH V +L+ T +
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLENQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Query: 141 HLDGH 145
++ GH
Sbjct: 129 NV-GH 132
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 108 PNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
P+++D++ IH AA+ G DT++ LL
Sbjct: 63 PDLKDRTGFAVIHDAARAGFLDTLQTLL 90
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 81 GNACMVHAATGGKSKLIEILMRYNPNLP-NVRDKSKLLPIHKAAQLGHRDTVRYLLSK 137
G+ + A GG ++E L PN+ N ++K +H AA G+ D V+ LL+K
Sbjct: 106 GSTALYWACHGGHKDIVEXLFT-QPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK 162
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 81 GNACMVH--AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLS 136
G++ +H AA G +L E L R NL N D+ P+ A+ G +TVR+LL
Sbjct: 1 GDSLSIHQLAAQGELDQLKEHL-RKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE 57
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 81 GNACMVH--AATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLS 136
G++ +H AA G +L E L R NL N D+ P+ A+ G +TVR+LL
Sbjct: 1 GDSLSIHQLAAQGELDQLKEHL-RKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE 57
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 81 GNACMVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSK 137
G + +AA G+ +++E L+ ++ N DK + P+ A GH V+ LLSK
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEGHVSCVKLLLSK 90
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 81 GNACMVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSK 137
G + +AA G+ +++E L+ ++ N DK + P+ A GH V+ LLSK
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEGHVSCVKLLLSK 95
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 96 LIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSKTTAHL 142
+++ L+ N+ N D +P+H AA G+ D YL+S+ AH+
Sbjct: 88 MVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQ-GAHV 132
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 81 GNACMVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLS 136
G + AA G ++++++L++ ++ N++D P+H AA G + R L+
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVE 253
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 85 MVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
++ AA G+ + ILM ++ N +D+ L P++ A GH + V LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLL 67
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 92 GKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
G +++E+L++ ++ N D P+H AA +GH + LL
Sbjct: 58 GHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAFIGHLEIAEVLL 100
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 72 FLQEWVSNEGNACMVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTV 131
F +W+ G + + AA G E+L+R + + R K P+H AA GH + V
Sbjct: 28 FTTDWL---GTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEGHANIV 83
Query: 132 RYLL 135
LL
Sbjct: 84 EVLL 87
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 85 MVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
++ AA G+ + ILM P D P+H AAQ GH T LL
Sbjct: 6 LLEAARAGQDDEVRILMANGA--PFTTDWLGTSPLHLAAQYGHFSTTEVLL 54
>pdb|1FNT|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|H Chain H, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|V Chain V, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|H Chain H, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|V Chain V, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3UN4|H Chain H, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|V Chain V, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|H Chain H, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|V Chain V, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4G4S|I Chain I, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 232
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 29/74 (39%)
Query: 54 SDAPPMFLDKLVSKVHQNFLQEWVSNEGNACMVHAATGGKSKLIEILMRYNPNLPNVRDK 113
S P+ DK +K+H+ + W + G A A T IE+ Y P V
Sbjct: 20 STQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSA 79
Query: 114 SKLLPIHKAAQLGH 127
++L H GH
Sbjct: 80 LQMLKQHLFKYQGH 93
>pdb|1RYP|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|H Chain H, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|V Chain V, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|H Chain H, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|V Chain V, A Gated Channel Into The Proteasome Core Particle
pdb|1JD2|H Chain H, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|O Chain O, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|H Chain H, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|V Chain V, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|H Chain H, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|V Chain V, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|H Chain H, Proteasome Inhibition By Fellutamide B
pdb|3D29|V Chain V, Proteasome Inhibition By Fellutamide B
pdb|3E47|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|H Chain H, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|V Chain V, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|I Chain I, Proteasome Activator Complex
pdb|1VSY|W Chain W, Proteasome Activator Complex
pdb|3L5Q|M Chain M, Proteasome Activator Complex
pdb|3L5Q|Y Chain Y, Proteasome Activator Complex
pdb|3MG4|H Chain H, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|V Chain V, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|H Chain H, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|V Chain V, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|H Chain H, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|V Chain V, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|H Chain H, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|V Chain V, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|H Chain H, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|V Chain V, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|H Chain H, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|V Chain V, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|H Chain H, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|V Chain V, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|H Chain H, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|V Chain V, 20s Yeast Proteasome In Complex With Glidobactin
Length = 222
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 29/74 (39%)
Query: 54 SDAPPMFLDKLVSKVHQNFLQEWVSNEGNACMVHAATGGKSKLIEILMRYNPNLPNVRDK 113
S P+ DK +K+H+ + W + G A A T IE+ Y P V
Sbjct: 20 STQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSA 79
Query: 114 SKLLPIHKAAQLGH 127
++L H GH
Sbjct: 80 LQMLKQHLFKYQGH 93
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 99 ILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLLSKT 138
+L R L +V D LP+ A + GHRD RYL + T
Sbjct: 96 VLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAAT 134
>pdb|3NZJ|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|4B4T|2 Chain 2, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 261
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 29/74 (39%)
Query: 54 SDAPPMFLDKLVSKVHQNFLQEWVSNEGNACMVHAATGGKSKLIEILMRYNPNLPNVRDK 113
S P+ DK +K+H+ + W + G A A T IE+ Y P V
Sbjct: 49 STQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSA 108
Query: 114 SKLLPIHKAAQLGH 127
++L H GH
Sbjct: 109 LQMLKQHLFKYQGH 122
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 85 MVHAATGGKSKLIEILMRYNPNLPNVRDKSKLLPIHKAAQLGHRDTVRYLL 135
++ AA G+ + IL ++ N D P+H AA LGH + V LL
Sbjct: 18 LLEAARAGQDDEVRILTANGADV-NANDYWGHTPLHLAAMLGHLEIVEVLL 67
>pdb|3NVN|A Chain A, Molecular Mechanism Of Guidance Cue Recognition
Length = 389
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 140 AHLDGHDWSTLLKDLINCNLFGKYY 164
+ L H WST LK + C++ G+ Y
Sbjct: 190 SSLSSHRWSTFLKVELECDIDGRSY 214
>pdb|3NVX|A Chain A, Molecular Mechanism Of Guidance Cue Recognition
pdb|3NVX|B Chain B, Molecular Mechanism Of Guidance Cue Recognition
Length = 383
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 140 AHLDGHDWSTLLKDLINCNLFGKYY 164
+ L H WST LK + C++ G+ Y
Sbjct: 190 SSLSSHRWSTFLKVELECDIDGRSY 214
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,376,774
Number of Sequences: 62578
Number of extensions: 211301
Number of successful extensions: 665
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 500
Number of HSP's gapped (non-prelim): 187
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)