BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>036071
SKALRVMLRSVFLAIVLLSLACIRSIVRGSSASFLNIDIDDYDLGSKNFEFLNLLFQDLG
NEGLIKKGDKALLVGSGNIGPVIASSKFFNDNEIHLVVKSDLGQLGSIADERFDFSFVSS
SLDTKFVDHVVKVGGIVVIQLIGDISDTYEKPSNYKLEYLRRYNSTILAMRRTALANELI
DSSAKRQLCQWTLEAKKAALKDLEDGIA

High Scoring Gene Products

Symbol, full name Information P value
AT1G58120 protein from Arabidopsis thaliana 9.3e-14

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  036071
        (208 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2196240 - symbol:AT1G58120 "AT1G58120" species...   185  9.3e-14   1


>TAIR|locus:2196240 [details] [associations]
            symbol:AT1G58120 "AT1G58120" species:3702 "Arabidopsis
            thaliana" [GO:0009860 "pollen tube growth" evidence=RCA]
            EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC079604 EMBL:DQ446370
            EMBL:AK118422 IPI:IPI00520701 RefSeq:NP_176109.2 UniGene:At.36923
            EnsemblPlants:AT1G58120.1 GeneID:842179 KEGG:ath:AT1G58120
            TAIR:At1g58120 eggNOG:NOG277799 HOGENOM:HOG000152177
            InParanoid:Q9C6F6 OMA:EMYKIET PhylomeDB:Q9C6F6
            ProtClustDB:CLSN2680519 Genevestigator:Q9C6F6 Uniprot:Q9C6F6
        Length = 420

 Score = 185 (70.2 bits), Expect = 9.3e-14, P = 9.3e-14
 Identities = 62/211 (29%), Positives = 103/211 (48%)

Query:     1 SKALRVMLRSVFLAIVLLSLACIRSIVRGSSASFLNIDIDDYDLGSKNFEFLNLLFQDLG 60
             S+ L + +RS  LA++ LS   +  +  G++A+  +  ++  DL     E L LL  DL 
Sbjct:    43 SEVLSLFMRSTLLALLFLSFTWLSLLKYGTTATAPSKSVES-DLP----ELLPLLLNDLE 97

Query:    61 NEGLIKKGDKALLVGSGNIGPVIAS-SKFFNDNEIHLVVKSDLGQLGSIADERFDFSFVS 119
              +GL K GDKAL +  G+    ++S S+   + ++ LV  SD      + DE FDF+F  
Sbjct:    98 KQGLFKMGDKALFLSGGDDEVTVSSYSQTVIETDMLLVSASDQEMQSMVPDETFDFAFAH 157

Query:   120 SS-LDT-KFXXXXXXXXXXXXXXXXX-DISDTYEKPSNYKLEYLRRYNSTILAMRRTALA 176
             S  +D+ +F                  D+   + K  NY++ Y++    T++ MR+T   
Sbjct:   158 SRHIDSAEFIDRTLKVGGIFTVQLNLQDLPPNFLKHPNYEIVYVKSSEYTVMTMRKTGET 217

Query:   177 NELIDSSAK-RQLCQWTLE-AKKAALKDLED 205
              +     A  R+L   T E A++ AL+ LED
Sbjct:   218 EQKQSLVATGRKLLGITEEDAREKALRKLED 248


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.375    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      208       191   0.00094  110 3  11 22  0.44    32
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  576 (61 KB)
  Total size of DFA:  137 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.53u 0.08s 15.61t   Elapsed:  00:00:00
  Total cpu time:  15.53u 0.08s 15.61t   Elapsed:  00:00:00
  Start:  Fri May 10 22:20:59 2013   End:  Fri May 10 22:20:59 2013

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