Query 036071
Match_columns 208
No_of_seqs 33 out of 35
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 09:08:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036071.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036071hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08241 Methyltransf_11: Meth 97.3 0.00018 3.9E-09 50.0 2.7 52 86-139 36-95 (95)
2 PF01209 Ubie_methyltran: ubiE 96.2 0.004 8.7E-08 54.0 3.3 79 65-145 45-157 (233)
3 PLN02233 ubiquinone biosynthes 95.3 0.035 7.6E-07 48.4 5.5 50 99-149 133-190 (261)
4 COG2226 UbiE Methylase involve 95.2 0.017 3.6E-07 51.2 3.2 72 67-140 51-155 (238)
5 PRK11873 arsM arsenite S-adeno 95.1 0.024 5.1E-07 48.7 3.8 41 99-140 134-182 (272)
6 PTZ00098 phosphoethanolamine N 94.8 0.067 1.4E-06 46.7 5.7 94 43-141 32-156 (263)
7 PLN02244 tocopherol O-methyltr 94.6 0.047 1E-06 49.4 4.6 75 66-141 117-223 (340)
8 KOG3045 Predicted RNA methylas 94.3 0.067 1.4E-06 49.6 4.8 84 50-140 166-263 (325)
9 PRK00536 speE spermidine synth 94.0 0.035 7.6E-07 49.7 2.4 33 110-142 137-172 (262)
10 PRK11088 rrmA 23S rRNA methylt 94.0 0.12 2.6E-06 44.8 5.5 43 99-142 139-182 (272)
11 PRK10258 biotin biosynthesis p 93.6 0.14 3.1E-06 43.3 5.2 74 66-141 41-140 (251)
12 PF13489 Methyltransf_23: Meth 93.2 0.11 2.3E-06 39.6 3.5 88 50-143 7-117 (161)
13 PRK11188 rrmJ 23S rRNA methylt 92.7 0.12 2.5E-06 43.9 3.4 80 62-142 46-166 (209)
14 PRK13942 protein-L-isoaspartat 92.5 0.23 5.1E-06 41.9 5.0 87 49-142 62-177 (212)
15 PF01135 PCMT: Protein-L-isoas 92.4 0.23 5E-06 42.8 4.9 89 48-143 57-174 (209)
16 PLN02232 ubiquinone biosynthes 91.8 0.17 3.8E-06 40.8 3.2 47 94-142 28-82 (160)
17 PLN02336 phosphoethanolamine N 91.6 0.43 9.4E-06 44.4 6.0 76 65-141 264-369 (475)
18 PRK00811 spermidine synthase; 91.3 0.24 5.1E-06 44.0 3.7 34 109-142 147-192 (283)
19 PRK01683 trans-aconitate 2-met 91.2 0.42 9E-06 40.5 5.0 75 65-142 29-131 (258)
20 PF12847 Methyltransf_18: Meth 90.8 0.31 6.7E-06 35.4 3.4 31 110-140 68-110 (112)
21 TIGR03840 TMPT_Se_Te thiopurin 90.7 0.42 9.2E-06 40.9 4.7 26 111-136 112-147 (213)
22 TIGR00438 rrmJ cell division p 90.3 0.26 5.6E-06 40.3 2.9 82 61-142 26-147 (188)
23 PRK14103 trans-aconitate 2-met 89.5 0.6 1.3E-05 39.9 4.6 83 57-142 19-127 (255)
24 COG0421 SpeE Spermidine syntha 89.3 0.48 1E-05 42.9 4.1 30 112-141 149-190 (282)
25 PRK11036 putative S-adenosyl-L 89.2 0.43 9.3E-06 40.9 3.5 42 101-142 101-150 (255)
26 PRK00107 gidB 16S rRNA methylt 88.9 0.58 1.3E-05 39.4 4.1 88 54-143 32-147 (187)
27 TIGR02072 BioC biotin biosynth 88.8 1 2.2E-05 36.5 5.3 42 99-141 86-135 (240)
28 TIGR02752 MenG_heptapren 2-hep 88.4 0.99 2.1E-05 37.4 5.1 77 64-142 42-152 (231)
29 PRK04266 fibrillarin; Provisio 88.3 0.44 9.6E-06 41.3 3.0 90 50-142 56-177 (226)
30 PRK13944 protein-L-isoaspartat 87.1 1.3 2.8E-05 37.1 5.0 35 108-143 138-175 (205)
31 COG4122 Predicted O-methyltran 85.8 0.46 9.9E-06 41.8 1.8 33 108-140 128-165 (219)
32 PRK13255 thiopurine S-methyltr 85.6 0.85 1.8E-05 39.2 3.3 26 111-136 115-150 (218)
33 TIGR00477 tehB tellurite resis 85.0 1.3 2.7E-05 36.8 3.9 31 110-140 92-132 (195)
34 PLN02490 MPBQ/MSBQ methyltrans 84.9 1.4 3E-05 40.9 4.6 76 61-139 107-213 (340)
35 PF01269 Fibrillarin: Fibrilla 84.9 1.5 3.3E-05 39.3 4.6 91 50-142 57-179 (229)
36 PF05148 Methyltransf_8: Hypot 84.4 0.7 1.5E-05 41.1 2.3 115 52-174 60-199 (219)
37 PRK11207 tellurite resistance 84.4 1.1 2.3E-05 37.3 3.3 38 100-139 85-132 (197)
38 PRK08317 hypothetical protein; 84.3 2.7 5.9E-05 33.9 5.5 41 100-141 76-124 (241)
39 PRK11705 cyclopropane fatty ac 83.8 0.92 2E-05 42.2 2.9 74 65-142 165-268 (383)
40 TIGR00080 pimt protein-L-isoas 83.4 2 4.3E-05 36.0 4.5 85 51-142 65-178 (215)
41 PF08541 ACP_syn_III_C: 3-Oxoa 83.4 1.1 2.4E-05 32.4 2.6 30 49-78 50-79 (90)
42 PF02353 CMAS: Mycolic acid cy 82.5 0.71 1.5E-05 41.2 1.5 74 64-142 59-167 (273)
43 PTZ00146 fibrillarin; Provisio 82.2 1.8 3.9E-05 39.8 4.1 91 50-142 116-238 (293)
44 PRK00517 prmA ribosomal protei 82.0 1.7 3.6E-05 37.5 3.6 122 48-172 102-249 (250)
45 COG0293 FtsJ 23S rRNA methylas 80.6 2 4.3E-05 37.7 3.6 99 60-162 38-183 (205)
46 PF13578 Methyltransf_24: Meth 80.1 0.81 1.7E-05 33.7 0.9 48 93-140 50-104 (106)
47 PRK14967 putative methyltransf 79.8 2.9 6.3E-05 35.1 4.3 42 99-142 90-160 (223)
48 TIGR00417 speE spermidine synt 79.8 1.7 3.6E-05 38.1 2.9 33 110-142 143-187 (270)
49 PRK05785 hypothetical protein; 79.6 2 4.2E-05 36.8 3.2 74 66-142 50-147 (226)
50 PLN02823 spermine synthase 78.4 2.2 4.8E-05 39.4 3.4 33 110-142 174-221 (336)
51 TIGR00138 gidB 16S rRNA methyl 77.6 1.6 3.4E-05 36.3 2.0 34 109-142 106-143 (181)
52 PLN02396 hexaprenyldihydroxybe 77.3 1.9 4.1E-05 39.6 2.6 75 66-142 130-236 (322)
53 PF01564 Spermine_synth: Sperm 77.3 3.2 6.9E-05 36.3 3.9 31 112-142 150-192 (246)
54 PRK12335 tellurite resistance 77.1 4.6 0.0001 35.5 4.9 30 110-139 182-221 (287)
55 COG2518 Pcm Protein-L-isoaspar 77.0 2.4 5.1E-05 37.4 3.0 88 50-143 59-171 (209)
56 PLN02366 spermidine synthase 76.8 2.2 4.8E-05 38.9 2.9 34 109-142 162-207 (308)
57 PRK03612 spermidine synthase; 76.1 3.7 7.9E-05 39.7 4.3 33 110-142 371-416 (521)
58 COG2521 Predicted archaeal met 76.0 2.4 5.2E-05 39.1 2.8 87 57-143 122-247 (287)
59 PF03141 Methyltransf_29: Puta 75.6 1.5 3.1E-05 43.4 1.4 36 104-139 173-217 (506)
60 COG4262 Predicted spermidine s 75.6 4.7 0.0001 39.5 4.8 40 111-154 364-416 (508)
61 PRK00312 pcm protein-L-isoaspa 75.4 5.8 0.00013 32.8 4.8 88 48-142 63-176 (212)
62 TIGR03587 Pse_Me-ase pseudamin 74.7 5.2 0.00011 33.8 4.4 72 65-139 41-139 (204)
63 PF03848 TehB: Tellurite resis 74.2 5.1 0.00011 34.5 4.3 71 99-174 83-178 (192)
64 TIGR01934 MenG_MenH_UbiE ubiqu 73.9 12 0.00026 30.2 6.1 41 99-140 94-142 (223)
65 TIGR02081 metW methionine bios 73.3 3.1 6.7E-05 34.1 2.6 42 100-141 62-109 (194)
66 PF13659 Methyltransf_26: Meth 73.0 3 6.5E-05 30.5 2.3 36 107-142 65-116 (117)
67 PF07021 MetW: Methionine bios 72.1 1.8 4E-05 37.7 1.1 100 63-163 9-151 (193)
68 PF03602 Cons_hypoth95: Conser 71.7 13 0.00028 31.3 6.0 119 48-170 25-181 (183)
69 PLN02781 Probable caffeoyl-CoA 71.6 2.5 5.4E-05 36.5 1.8 30 110-139 142-176 (234)
70 TIGR02469 CbiT precorrin-6Y C5 71.1 4.6 0.0001 29.3 2.9 32 110-141 86-122 (124)
71 KOG1540 Ubiquinone biosynthesi 70.8 2.9 6.4E-05 38.7 2.1 42 99-141 165-214 (296)
72 PRK13943 protein-L-isoaspartat 70.5 6.6 0.00014 36.1 4.4 35 109-143 146-182 (322)
73 PRK15068 tRNA mo(5)U34 methylt 70.5 3.5 7.7E-05 37.4 2.6 44 94-140 174-225 (322)
74 PF01596 Methyltransf_3: O-met 69.2 3.4 7.4E-05 35.5 2.1 30 111-140 120-154 (205)
75 KOG1663 O-methyltransferase [S 68.7 3.5 7.5E-05 37.2 2.1 31 110-140 147-182 (237)
76 PF08242 Methyltransf_12: Meth 68.6 5.3 0.00011 28.7 2.7 27 111-137 65-99 (99)
77 PF02887 PK_C: Pyruvate kinase 68.2 11 0.00025 28.7 4.6 29 48-76 73-101 (117)
78 cd02440 AdoMet_MTases S-adenos 68.1 6.4 0.00014 26.1 2.9 32 109-140 63-103 (107)
79 PLN02589 caffeoyl-CoA O-methyl 67.3 3.3 7.1E-05 36.8 1.6 29 111-139 155-188 (247)
80 smart00138 MeTrc Methyltransfe 66.6 7.8 0.00017 34.1 3.9 42 100-142 192-243 (264)
81 PRK13699 putative methylase; P 66.3 2.6 5.5E-05 36.6 0.8 41 102-142 10-73 (227)
82 PLN02476 O-methyltransferase 65.7 3 6.4E-05 37.9 1.1 30 110-139 192-226 (278)
83 PF13847 Methyltransf_31: Meth 65.6 6.3 0.00014 30.8 2.8 42 100-142 61-111 (152)
84 PRK00377 cbiT cobalt-precorrin 65.5 6.2 0.00013 32.6 2.9 33 110-142 109-146 (198)
85 PRK01581 speE spermidine synth 65.2 5.4 0.00012 38.0 2.8 33 110-142 224-269 (374)
86 TIGR00537 hemK_rel_arch HemK-r 65.0 18 0.00038 29.2 5.4 37 127-163 126-166 (179)
87 smart00828 PKS_MT Methyltransf 64.5 4 8.7E-05 33.7 1.6 31 111-141 66-104 (224)
88 COG4627 Uncharacterized protei 63.9 1.4 3.1E-05 38.3 -1.2 68 72-142 7-87 (185)
89 TIGR00452 methyltransferase, p 61.8 6.2 0.00014 36.1 2.4 39 100-140 178-224 (314)
90 PRK05134 bifunctional 3-demeth 60.3 11 0.00024 31.3 3.5 35 108-142 110-152 (233)
91 PRK00216 ubiE ubiquinone/menaq 59.6 28 0.00061 28.3 5.7 40 100-140 110-157 (239)
92 smart00650 rADc Ribosomal RNA 58.3 29 0.00063 27.8 5.5 77 94-172 61-167 (169)
93 PRK04457 spermidine synthase; 57.8 9.7 0.00021 33.5 2.9 32 111-142 135-178 (262)
94 PF05219 DREV: DREV methyltran 57.6 15 0.00033 33.7 4.1 90 48-142 74-189 (265)
95 TIGR00091 tRNA (guanine-N(7)-) 55.4 12 0.00026 30.9 2.9 35 108-142 83-133 (194)
96 PRK09328 N5-glutamine S-adenos 55.2 15 0.00033 31.1 3.5 14 129-142 226-239 (275)
97 PLN02668 indole-3-acetate carb 53.9 39 0.00085 32.3 6.4 19 101-120 152-170 (386)
98 KOG1271 Methyltransferases [Ge 53.4 5.4 0.00012 35.7 0.5 19 124-142 164-182 (227)
99 cd08770 DAP_dppA_3 Peptidase M 52.1 22 0.00049 32.3 4.3 69 61-133 43-121 (263)
100 PRK15451 tRNA cmo(5)U34 methyl 52.0 29 0.00063 29.7 4.8 30 111-140 124-163 (247)
101 KOG4300 Predicted methyltransf 51.0 17 0.00038 33.0 3.4 44 96-139 129-180 (252)
102 PRK00121 trmB tRNA (guanine-N( 50.8 15 0.00032 30.8 2.7 35 108-142 107-157 (202)
103 cd08663 DAP_dppA_1 Peptidase M 50.3 54 0.0012 29.9 6.4 137 62-204 44-208 (266)
104 PLN02336 phosphoethanolamine N 50.0 15 0.00032 34.4 2.8 34 107-140 98-141 (475)
105 PF08704 GCD14: tRNA methyltra 49.1 37 0.0008 30.3 5.1 76 65-142 38-147 (247)
106 PF01728 FtsJ: FtsJ-like methy 48.1 11 0.00023 30.4 1.4 34 111-144 90-142 (181)
107 PF05724 TPMT: Thiopurine S-me 47.1 53 0.0012 28.4 5.7 26 111-136 115-150 (218)
108 TIGR01177 conserved hypothetic 46.1 15 0.00032 33.0 2.2 46 98-144 235-297 (329)
109 cd08769 DAP_dppA_2 Peptidase M 44.8 36 0.00078 31.0 4.5 135 62-202 44-206 (270)
110 PRK11524 putative methyltransf 44.6 18 0.0004 31.9 2.5 36 107-142 22-81 (284)
111 TIGR03534 RF_mod_PrmC protein- 44.1 35 0.00076 28.3 4.0 16 127-142 203-218 (251)
112 PRK06922 hypothetical protein; 43.0 19 0.0004 37.0 2.6 42 100-141 474-537 (677)
113 PRK14121 tRNA (guanine-N(7)-)- 42.1 25 0.00054 33.6 3.1 36 107-142 187-236 (390)
114 PRK13918 CRP/FNR family transc 41.9 24 0.00053 28.3 2.7 30 48-77 162-191 (202)
115 PRK09258 3-oxoacyl-(acyl carri 41.6 25 0.00055 30.9 2.9 29 50-78 299-327 (338)
116 PRK14968 putative methyltransf 40.8 31 0.00067 27.1 3.0 37 127-163 134-174 (188)
117 PRK12879 3-oxoacyl-(acyl carri 40.4 30 0.00065 30.2 3.2 29 50-78 285-313 (325)
118 PRK08287 cobalt-precorrin-6Y C 39.1 23 0.00049 28.8 2.1 54 110-163 95-157 (187)
119 TIGR00406 prmA ribosomal prote 38.4 22 0.00048 31.4 2.1 33 108-140 221-258 (288)
120 KOG0934 Clathrin adaptor compl 38.4 22 0.00047 30.1 1.9 30 147-179 47-78 (145)
121 cd00830 KAS_III Ketoacyl-acyl 38.0 32 0.00069 29.7 2.9 29 50-78 283-311 (320)
122 PF13545 HTH_Crp_2: Crp-like h 36.8 26 0.00056 24.2 1.8 29 48-76 41-69 (76)
123 TIGR03697 NtcA_cyano global ni 36.7 31 0.00066 27.3 2.4 29 48-76 156-184 (193)
124 CHL00203 fabH 3-oxoacyl-acyl-c 36.6 34 0.00074 30.3 2.9 29 50-78 286-314 (326)
125 KOG1269 SAM-dependent methyltr 35.0 22 0.00048 33.5 1.6 44 98-142 165-216 (364)
126 PF07942 N2227: N2227-like pro 34.9 29 0.00064 31.5 2.3 38 99-137 150-198 (270)
127 PRK06816 3-oxoacyl-(acyl carri 34.8 44 0.00094 30.7 3.4 30 49-78 336-365 (378)
128 PF08003 Methyltransf_9: Prote 34.3 37 0.00081 31.9 2.9 31 110-140 180-218 (315)
129 PF13649 Methyltransf_25: Meth 34.2 13 0.00028 27.0 -0.1 28 108-135 63-101 (101)
130 PRK11805 N5-glutamine S-adenos 34.0 28 0.00061 31.4 2.1 18 127-144 249-266 (307)
131 PRK11753 DNA-binding transcrip 33.9 43 0.00093 27.0 2.9 28 48-75 181-208 (211)
132 PF13241 NAD_binding_7: Putati 33.6 23 0.00049 26.6 1.2 41 112-152 60-102 (103)
133 PRK05963 3-oxoacyl-(acyl carri 33.0 43 0.00094 29.4 3.0 29 50-78 287-315 (326)
134 cd01484 E1-2_like Ubiquitin ac 32.9 13 0.00029 32.6 -0.2 42 70-111 1-48 (234)
135 cd00831 CHS_like Chalcone and 32.9 48 0.001 29.8 3.3 30 50-80 324-353 (361)
136 PRK07204 3-oxoacyl-(acyl carri 32.0 47 0.001 29.2 3.1 29 50-78 290-318 (329)
137 cd00281 DAP_dppA Peptidase M55 31.5 78 0.0017 28.9 4.4 65 62-131 44-118 (265)
138 PRK05690 molybdopterin biosynt 30.1 17 0.00037 31.7 -0.0 42 67-108 31-78 (245)
139 PF04951 Peptidase_M55: D-amin 29.9 55 0.0012 29.8 3.2 128 62-205 44-209 (265)
140 TIGR03334 IOR_beta indolepyruv 29.1 42 0.0009 27.9 2.1 45 94-140 47-92 (189)
141 PRK10901 16S rRNA methyltransf 28.7 64 0.0014 30.2 3.5 18 65-82 242-259 (427)
142 cd01488 Uba3_RUB Ubiquitin act 28.2 20 0.00043 32.8 0.1 39 70-108 1-45 (291)
143 PF00899 ThiF: ThiF family; I 27.2 13 0.00028 28.8 -1.2 46 68-113 2-53 (135)
144 KOG1661 Protein-L-isoaspartate 27.1 46 0.00099 30.3 2.1 16 64-79 79-94 (237)
145 TIGR01381 E1_like_apg7 E1-like 26.9 27 0.00059 35.8 0.8 44 68-111 338-387 (664)
146 PLN02326 3-oxoacyl-[acyl-carri 26.5 64 0.0014 29.6 3.0 31 48-78 338-368 (379)
147 PRK11161 fumarate/nitrate redu 26.4 52 0.0011 27.2 2.2 29 48-76 197-225 (235)
148 PRK14904 16S rRNA methyltransf 26.2 1.1E+02 0.0024 28.9 4.6 15 66-80 249-263 (445)
149 PRK10611 chemotaxis methyltran 26.2 73 0.0016 29.0 3.3 33 110-142 221-263 (287)
150 PRK10402 DNA-binding transcrip 26.0 55 0.0012 27.3 2.3 29 48-76 182-210 (226)
151 cd00757 ThiF_MoeB_HesA_family 25.3 24 0.00053 30.0 0.1 43 68-110 21-69 (228)
152 PRK06840 hypothetical protein; 25.2 72 0.0016 28.2 3.1 28 51-78 297-324 (339)
153 smart00690 DM5 Domain of unkno 25.1 44 0.00095 26.6 1.5 11 152-162 32-42 (102)
154 KOG2352 Predicted spermine/spe 24.8 74 0.0016 31.6 3.3 39 99-138 102-158 (482)
155 PRK12475 thiamine/molybdopteri 24.8 23 0.00051 32.6 -0.1 43 68-110 24-72 (338)
156 COG2227 UbiG 2-polyprenyl-3-me 24.7 34 0.00073 31.1 0.9 30 111-140 123-160 (243)
157 PF03103 DUF243: Domain of unk 24.5 47 0.001 26.2 1.5 12 152-163 30-41 (97)
158 COG0742 N6-adenine-specific me 24.4 3E+02 0.0066 23.9 6.6 59 112-171 114-183 (187)
159 PRK06247 pyruvate kinase; Prov 24.2 1.4E+02 0.0031 29.4 5.1 30 48-77 425-454 (476)
160 cd05568 PTS_IIB_bgl_like PTS_I 24.2 45 0.00097 23.2 1.3 49 70-121 2-55 (85)
161 TIGR03533 L3_gln_methyl protei 24.1 1.2E+02 0.0026 26.9 4.3 17 127-143 237-253 (284)
162 KOG3010 Methyltransferase [Gen 23.5 44 0.00096 30.7 1.4 34 110-143 98-139 (261)
163 PRK07143 hypothetical protein; 23.3 30 0.00064 31.4 0.2 83 107-192 73-162 (279)
164 TIGR02689 ars_reduc_gluta arse 23.2 30 0.00066 26.9 0.2 48 70-120 28-79 (126)
165 PRK08223 hypothetical protein; 23.1 24 0.00052 32.4 -0.4 41 68-108 27-73 (287)
166 PRK10909 rsmD 16S rRNA m(2)G96 22.7 3.3E+02 0.0071 23.2 6.5 118 48-172 37-190 (199)
167 PRK09489 rsmC 16S ribosomal RN 22.6 74 0.0016 29.3 2.7 33 110-142 259-304 (342)
168 TIGR02355 moeB molybdopterin s 22.6 22 0.00047 31.1 -0.7 41 68-108 24-70 (240)
169 PRK07878 molybdopterin biosynt 22.4 33 0.00071 32.0 0.4 49 59-107 32-87 (392)
170 KOG1331 Predicted methyltransf 21.9 99 0.0021 28.9 3.3 64 92-156 84-158 (293)
171 PF01955 CbiZ: Adenosylcobinam 21.7 40 0.00087 28.8 0.7 21 184-204 123-143 (191)
172 KOG0594 Protein kinase PCTAIRE 21.6 1.1E+02 0.0023 29.0 3.5 34 153-186 22-59 (323)
173 PRK05597 molybdopterin biosynt 21.5 35 0.00077 31.4 0.4 42 67-108 27-74 (355)
174 TIGR02356 adenyl_thiF thiazole 21.3 29 0.00064 29.2 -0.2 40 67-106 20-65 (202)
175 PF01555 N6_N4_Mtase: DNA meth 21.3 55 0.0012 26.1 1.4 21 124-144 39-59 (231)
176 TIGR03736 PRTRC_ThiF PRTRC sys 21.1 29 0.00063 31.0 -0.3 47 63-110 6-68 (244)
177 PF03141 Methyltransf_29: Puta 21.0 47 0.001 33.1 1.1 66 72-141 370-467 (506)
178 KOG0024 Sorbitol dehydrogenase 20.9 1.5E+02 0.0031 28.6 4.3 130 32-163 134-297 (354)
179 PRK15001 SAM-dependent 23S rib 20.5 2.3E+02 0.0051 26.8 5.6 35 108-142 294-341 (378)
180 PF00325 Crp: Bacterial regula 20.4 71 0.0015 20.4 1.5 18 48-65 15-32 (32)
181 TIGR00747 fabH 3-oxoacyl-(acyl 20.3 1E+02 0.0023 26.8 3.0 28 51-78 280-307 (318)
182 cd01489 Uba2_SUMO Ubiquitin ac 20.3 27 0.00059 32.2 -0.6 40 70-109 1-46 (312)
183 PRK09352 3-oxoacyl-(acyl carri 20.1 1.1E+02 0.0024 26.6 3.1 27 52-78 281-307 (319)
184 cd01486 Apg7 Apg7 is an E1-lik 20.1 40 0.00086 31.5 0.4 42 70-111 1-48 (307)
185 PF05301 Mec-17: Touch recepto 20.0 53 0.0011 27.0 1.0 66 62-149 21-91 (120)
No 1
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=97.32 E-value=0.00018 Score=50.05 Aligned_cols=52 Identities=29% Similarity=0.435 Sum_probs=36.7
Q ss_pred ccccccCceeeeecCcccccCCCCCcceeEEEecCCC-----c---cchhccceeeCCEEEE
Q 036071 86 SKFFNDNEIHLVVKSDLGQLGSIADERFDFSFVSSSL-----D---TKFVDHVVKVGGIVVI 139 (208)
Q Consensus 86 ~~~l~~d~id~V~~~Dl~~q~~~~D~sfDFvf~~~f~-----~---~~FIDRtLK~GGI~a~ 139 (208)
++.....++. +...|.++.+ |+|+|||.++..+.. . .+-+-|+||+||++++
T Consensus 36 ~~~~~~~~~~-~~~~d~~~l~-~~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 36 RKRLKNEGVS-FRQGDAEDLP-FPDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHTTTSTEE-EEESBTTSSS-S-TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred HhcccccCch-heeehHHhCc-cccccccccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 3444444455 6677788775 999999999998844 1 3449999999999975
No 2
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=96.22 E-value=0.004 Score=54.01 Aligned_cols=79 Identities=24% Similarity=0.319 Sum_probs=41.6
Q ss_pred CCCCCeEEEeecCCCCcccc-cccccccC----ceeeee---------------------cCcccccCCCCCcceeEEEe
Q 036071 65 IKKGDKALLVGSGNIGPVIA-SSKFFNDN----EIHLVV---------------------KSDLGQLGSIADERFDFSFV 118 (208)
Q Consensus 65 Lk~g~KAL~vg~~~~g~~v~-~~~~l~~d----~id~V~---------------------~~Dl~~q~~~~D~sfDFvf~ 118 (208)
+++|.+.|=||.|. |.... +.+....+ ++|+-+ .+|-++.| |+|+|||.+..
T Consensus 45 ~~~g~~vLDv~~Gt-G~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp-~~d~sfD~v~~ 122 (233)
T PF01209_consen 45 LRPGDRVLDVACGT-GDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP-FPDNSFDAVTC 122 (233)
T ss_dssp --S--EEEEET-TT-SHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB---S-TT-EEEEEE
T ss_pred CCCCCEEEEeCCCh-HHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc-CCCCceeEEEH
Confidence 67899999999999 65543 22222111 233221 35666666 99999999984
Q ss_pred -cCCC-------ccchhccceeeCCEEEEEecCCC
Q 036071 119 -SSSL-------DTKFVDHVVKVGGIVVIQLIGDI 145 (208)
Q Consensus 119 -~~f~-------~~~FIDRtLK~GGI~a~~l~~~~ 145 (208)
+++. ..+.+=|+||+||.+++.=-+.|
T Consensus 123 ~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p 157 (233)
T PF01209_consen 123 SFGLRNFPDRERALREMYRVLKPGGRLVILEFSKP 157 (233)
T ss_dssp ES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred HhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCC
Confidence 3333 14458899999998876443333
No 3
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=95.31 E-value=0.035 Score=48.37 Aligned_cols=50 Identities=20% Similarity=0.168 Sum_probs=33.8
Q ss_pred cCcccccCCCCCcceeEEEecC-CC----c---cchhccceeeCCEEEEEecCCCCccc
Q 036071 99 KSDLGQLGSIADERFDFSFVSS-SL----D---TKFVDHVVKVGGIVVIQLIGDISDTY 149 (208)
Q Consensus 99 ~~Dl~~q~~~~D~sfDFvf~~~-f~----~---~~FIDRtLK~GGI~a~~l~~~~s~af 149 (208)
.+|.++.+ ++|++||+++.+. ++ + .+-+-|+||+||.+++.--..+++.|
T Consensus 133 ~~d~~~lp-~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~ 190 (261)
T PLN02233 133 EGDATDLP-FDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPF 190 (261)
T ss_pred EcccccCC-CCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHH
Confidence 35566555 8999999998743 22 2 33499999999998876543443333
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=95.20 E-value=0.017 Score=51.23 Aligned_cols=72 Identities=28% Similarity=0.320 Sum_probs=47.1
Q ss_pred CCCeEEEeecCCCCcccc-ccc-cc--ccCceee-------------------e--ecCcccccCCCCCcceeEEEe-cC
Q 036071 67 KGDKALLVGSGNIGPVIA-SSK-FF--NDNEIHL-------------------V--VKSDLGQLGSIADERFDFSFV-SS 120 (208)
Q Consensus 67 ~g~KAL~vg~~~~g~~v~-~~~-~l--~~d~id~-------------------V--~~~Dl~~q~~~~D~sfDFvf~-~~ 120 (208)
+|.|.|=||.|. |+... +.. +. +.-++|+ | -.+|-++.| |+|+|||.+.. ++
T Consensus 51 ~g~~vLDva~GT-Gd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP-f~D~sFD~vt~~fg 128 (238)
T COG2226 51 PGDKVLDVACGT-GDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP-FPDNSFDAVTISFG 128 (238)
T ss_pred CCCEEEEecCCc-cHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC-CCCCccCEEEeeeh
Confidence 999999999998 43322 221 11 1112331 1 267788888 99999998853 33
Q ss_pred CC-------ccchhccceeeCCEEEEE
Q 036071 121 SL-------DTKFVDHVVKVGGIVVIQ 140 (208)
Q Consensus 121 f~-------~~~FIDRtLK~GGI~a~~ 140 (208)
.. ..+.+=||||+||++++.
T Consensus 129 lrnv~d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 129 LRNVTDIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred hhcCCCHHHHHHHHHHhhcCCeEEEEE
Confidence 32 255689999999976654
No 5
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=95.12 E-value=0.024 Score=48.69 Aligned_cols=41 Identities=24% Similarity=0.233 Sum_probs=30.8
Q ss_pred cCcccccCCCCCcceeEEEecCC-C-------ccchhccceeeCCEEEEE
Q 036071 99 KSDLGQLGSIADERFDFSFVSSS-L-------DTKFVDHVVKVGGIVVIQ 140 (208)
Q Consensus 99 ~~Dl~~q~~~~D~sfDFvf~~~f-~-------~~~FIDRtLK~GGI~a~~ 140 (208)
.+|++..+ +++++||.++++.. . -.+-+=|+||+||.+++.
T Consensus 134 ~~d~~~l~-~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 134 LGEIEALP-VADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred EcchhhCC-CCCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEE
Confidence 46777655 78899999998753 1 134488999999999873
No 6
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=94.78 E-value=0.067 Score=46.69 Aligned_cols=94 Identities=18% Similarity=0.277 Sum_probs=55.7
Q ss_pred CCCCcchhhHHHHHHHhccccCCCCCCeEEEeecCCCCccccccccc--ccCceeee-------------------ecCc
Q 036071 43 DLGSKNFEFLNLLFQDLGNEGLIKKGDKALLVGSGNIGPVIASSKFF--NDNEIHLV-------------------VKSD 101 (208)
Q Consensus 43 ~~~~~~~~~l~lLf~DL~~EGLLk~g~KAL~vg~~~~g~~v~~~~~l--~~d~id~V-------------------~~~D 101 (208)
.+.++..+-...++..|. +++|.+.|=||.|.|+....+.... +..++|+- -..|
T Consensus 32 ~~~~gg~~~~~~~l~~l~----l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D 107 (263)
T PTZ00098 32 YISSGGIEATTKILSDIE----LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEAND 107 (263)
T ss_pred CCCCCchHHHHHHHHhCC----CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECC
Confidence 344445555666666552 5788999999999843222221111 00122221 1355
Q ss_pred ccccCCCCCcceeEEEecC-C-C-----ccch---hccceeeCCEEEEEe
Q 036071 102 LGQLGSIADERFDFSFVSS-S-L-----DTKF---VDHVVKVGGIVVIQL 141 (208)
Q Consensus 102 l~~q~~~~D~sfDFvf~~~-f-~-----~~~F---IDRtLK~GGI~a~~l 141 (208)
+...+ +++++||++++.. + + ..++ +-|+||+||.+++.-
T Consensus 108 ~~~~~-~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 108 ILKKD-FPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred cccCC-CCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 55444 8899999999843 2 1 2233 679999999998753
No 7
>PLN02244 tocopherol O-methyltransferase
Probab=94.65 E-value=0.047 Score=49.44 Aligned_cols=75 Identities=24% Similarity=0.315 Sum_probs=46.3
Q ss_pred CCCCeEEEeecCCCCcccccccccc--cCceee----------------------eecCcccccCCCCCcceeEEEecCC
Q 036071 66 KKGDKALLVGSGNIGPVIASSKFFN--DNEIHL----------------------VVKSDLGQLGSIADERFDFSFVSSS 121 (208)
Q Consensus 66 k~g~KAL~vg~~~~g~~v~~~~~l~--~d~id~----------------------V~~~Dl~~q~~~~D~sfDFvf~~~f 121 (208)
+++++.|=||.|.|+....+..... .-++|+ +-.+|....+ ++|++||++++..-
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP-FEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC-CCCCCccEEEECCc
Confidence 7889999999998532222211110 012221 1134555555 89999999998542
Q ss_pred -C----ccch---hccceeeCCEEEEEe
Q 036071 122 -L----DTKF---VDHVVKVGGIVVIQL 141 (208)
Q Consensus 122 -~----~~~F---IDRtLK~GGI~a~~l 141 (208)
. ..++ +-|+||+||.+++.-
T Consensus 196 ~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 196 GEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred hhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 1 2333 779999999988753
No 8
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=94.32 E-value=0.067 Score=49.57 Aligned_cols=84 Identities=21% Similarity=0.336 Sum_probs=58.9
Q ss_pred hhHHHHHHHhccccCCCCCCeEEEeecCCCCcccc-cccccccCceeeee------cCcccccCCCCCcceeEEEecCCC
Q 036071 50 EFLNLLFQDLGNEGLIKKGDKALLVGSGNIGPVIA-SSKFFNDNEIHLVV------KSDLGQLGSIADERFDFSFVSSSL 122 (208)
Q Consensus 50 ~~l~lLf~DL~~EGLLk~g~KAL~vg~~~~g~~v~-~~~~l~~d~id~V~------~~Dl~~q~~~~D~sfDFvf~~~f~ 122 (208)
.=++.+.++|+.+ .+-.+|++=.||..-- .++.-..+-+|+|+ +-|+.+-| .+|+|+|.+..+=--
T Consensus 166 nPld~ii~~ik~r------~~~~vIaD~GCGEakiA~~~~~kV~SfDL~a~~~~V~~cDm~~vP-l~d~svDvaV~CLSL 238 (325)
T KOG3045|consen 166 NPLDVIIRKIKRR------PKNIVIADFGCGEAKIASSERHKVHSFDLVAVNERVIACDMRNVP-LEDESVDVAVFCLSL 238 (325)
T ss_pred ChHHHHHHHHHhC------cCceEEEecccchhhhhhccccceeeeeeecCCCceeeccccCCc-CccCcccEEEeeHhh
Confidence 3477888998876 5566777767664321 23344444688877 55888877 999999998765321
Q ss_pred -------ccchhccceeeCCEEEEE
Q 036071 123 -------DTKFVDHVVKVGGIVVIQ 140 (208)
Q Consensus 123 -------~~~FIDRtLK~GGI~a~~ 140 (208)
..+.+.|+||+||++-+-
T Consensus 239 Mgtn~~df~kEa~RiLk~gG~l~IA 263 (325)
T KOG3045|consen 239 MGTNLADFIKEANRILKPGGLLYIA 263 (325)
T ss_pred hcccHHHHHHHHHHHhccCceEEEE
Confidence 355599999999998654
No 9
>PRK00536 speE spermidine synthase; Provisional
Probab=94.04 E-value=0.035 Score=49.74 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=28.5
Q ss_pred CcceeEEEecCCCccch---hccceeeCCEEEEEec
Q 036071 110 DERFDFSFVSSSLDTKF---VDHVVKVGGIVVIQLI 142 (208)
Q Consensus 110 D~sfDFvf~~~f~~~~F---IDRtLK~GGI~a~~l~ 142 (208)
.++||.++..+.++.+| +-|.||+|||++.|.+
T Consensus 137 ~~~fDVIIvDs~~~~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 137 IKKYDLIICLQEPDIHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred CCcCCEEEEcCCCChHHHHHHHHhcCCCcEEEECCC
Confidence 37899999997666666 7999999999999987
No 10
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=93.95 E-value=0.12 Score=44.85 Aligned_cols=43 Identities=26% Similarity=0.257 Sum_probs=32.0
Q ss_pred cCcccccCCCCCcceeEEEecCCC-ccchhccceeeCCEEEEEec
Q 036071 99 KSDLGQLGSIADERFDFSFVSSSL-DTKFVDHVVKVGGIVVIQLI 142 (208)
Q Consensus 99 ~~Dl~~q~~~~D~sfDFvf~~~f~-~~~FIDRtLK~GGI~a~~l~ 142 (208)
..|..+.+ ++|++||.+++.-.. ..+.+-|+||+||++++...
T Consensus 139 ~~d~~~lp-~~~~sfD~I~~~~~~~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 139 VASSHRLP-FADQSLDAIIRIYAPCKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred EeecccCC-CcCCceeEEEEecCCCCHHHHHhhccCCCEEEEEeC
Confidence 35666555 899999999975433 34558999999999987643
No 11
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=93.57 E-value=0.14 Score=43.27 Aligned_cols=74 Identities=22% Similarity=0.289 Sum_probs=46.8
Q ss_pred CCCCeEEEeecCCCCcccc-ccccc-ccCceee----------------eecCcccccCCCCCcceeEEEecCCC-----
Q 036071 66 KKGDKALLVGSGNIGPVIA-SSKFF-NDNEIHL----------------VVKSDLGQLGSIADERFDFSFVSSSL----- 122 (208)
Q Consensus 66 k~g~KAL~vg~~~~g~~v~-~~~~l-~~d~id~----------------V~~~Dl~~q~~~~D~sfDFvf~~~f~----- 122 (208)
+++.+.|-+|.|. |.... +..-. ...++|+ +-.+|++..+ +++++||.++++...
T Consensus 41 ~~~~~vLDiGcG~-G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~-~~~~~fD~V~s~~~l~~~~d 118 (251)
T PRK10258 41 RKFTHVLDAGCGP-GWMSRYWRERGSQVTALDLSPPMLAQARQKDAADHYLAGDIESLP-LATATFDLAWSNLAVQWCGN 118 (251)
T ss_pred cCCCeEEEeeCCC-CHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCc-CCCCcEEEEEECchhhhcCC
Confidence 4678999999998 53321 11100 0002222 2356777655 889999999987632
Q ss_pred c---cchhccceeeCCEEEEEe
Q 036071 123 D---TKFVDHVVKVGGIVVIQL 141 (208)
Q Consensus 123 ~---~~FIDRtLK~GGI~a~~l 141 (208)
+ .+-+-|+||+||++++-.
T Consensus 119 ~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 119 LSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred HHHHHHHHHHHcCCCeEEEEEe
Confidence 2 333778999999998753
No 12
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=93.22 E-value=0.11 Score=39.65 Aligned_cols=88 Identities=22% Similarity=0.312 Sum_probs=57.0
Q ss_pred hhHHHHHHHhccccCCCCCCeEEEeecCCCCcccccccccccC-----ceeeee----------cCcccccCCCCCccee
Q 036071 50 EFLNLLFQDLGNEGLIKKGDKALLVGSGNIGPVIASSKFFNDN-----EIHLVV----------KSDLGQLGSIADERFD 114 (208)
Q Consensus 50 ~~l~lLf~DL~~EGLLk~g~KAL~vg~~~~g~~v~~~~~l~~d-----~id~V~----------~~Dl~~q~~~~D~sfD 114 (208)
+.+..+++.+... ++++.+.|=+|.|. |... +.+... ++|+-+ ......+...++++||
T Consensus 7 ~~~~~~~~~~~~~--~~~~~~vLDiGcG~-G~~~---~~l~~~~~~~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fD 80 (161)
T PF13489_consen 7 RAYADLLERLLPR--LKPGKRVLDIGCGT-GSFL---RALAKRGFEVTGVDISPQMIEKRNVVFDNFDAQDPPFPDGSFD 80 (161)
T ss_dssp HCHHHHHHHHHTC--TTTTSEEEEESSTT-SHHH---HHHHHTTSEEEEEESSHHHHHHTTSEEEEEECHTHHCHSSSEE
T ss_pred HHHHHHHHHHhcc--cCCCCEEEEEcCCC-CHHH---HHHHHhCCEEEEEECCHHHHhhhhhhhhhhhhhhhhccccchh
Confidence 4455566666655 68899999999998 5332 223333 333321 1111224447889999
Q ss_pred EEEecCCC-----c---cchhccceeeCCEEEEEecC
Q 036071 115 FSFVSSSL-----D---TKFVDHVVKVGGIVVIQLIG 143 (208)
Q Consensus 115 Fvf~~~f~-----~---~~FIDRtLK~GGI~a~~l~~ 143 (208)
+++++.-. + .+-+=+.||+||++++..-+
T Consensus 81 ~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 81 LIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp EEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred hHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 99999743 2 33388999999999998874
No 13
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=92.75 E-value=0.12 Score=43.88 Aligned_cols=80 Identities=14% Similarity=0.209 Sum_probs=50.8
Q ss_pred ccCCCCCCeEEEeecCCCCcccc-cccc-c---ccCceeee----------ecCcccccC-------CCCCcceeEEEec
Q 036071 62 EGLIKKGDKALLVGSGNIGPVIA-SSKF-F---NDNEIHLV----------VKSDLGQLG-------SIADERFDFSFVS 119 (208)
Q Consensus 62 EGLLk~g~KAL~vg~~~~g~~v~-~~~~-l---~~d~id~V----------~~~Dl~~q~-------~~~D~sfDFvf~~ 119 (208)
=+++++|.+.|=+|+|. |.... +... . .-.++|+- -.+|+.... .+++++||+++++
T Consensus 46 ~~~~~~~~~VLDlG~Gt-G~~t~~l~~~~~~~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~ 124 (209)
T PRK11188 46 DKLFKPGMTVVDLGAAP-GGWSQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSD 124 (209)
T ss_pred hccCCCCCEEEEEcccC-CHHHHHHHHHcCCCceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecC
Confidence 47889999999999999 43322 1111 1 11134432 134555432 2678899999986
Q ss_pred CCC-------------------ccchhccceeeCCEEEEEec
Q 036071 120 SSL-------------------DTKFVDHVVKVGGIVVIQLI 142 (208)
Q Consensus 120 ~f~-------------------~~~FIDRtLK~GGI~a~~l~ 142 (208)
.-. ..+.+-|+||+||++++-+-
T Consensus 125 ~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 125 MAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 521 12557889999999999655
No 14
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=92.54 E-value=0.23 Score=41.88 Aligned_cols=87 Identities=21% Similarity=0.239 Sum_probs=51.6
Q ss_pred hhhHHHHHHHhccccCCCCCCeEEEeecCCCCcccc-ccccccc-----------------------C---ceeeeecCc
Q 036071 49 FEFLNLLFQDLGNEGLIKKGDKALLVGSGNIGPVIA-SSKFFND-----------------------N---EIHLVVKSD 101 (208)
Q Consensus 49 ~~~l~lLf~DL~~EGLLk~g~KAL~vg~~~~g~~v~-~~~~l~~-----------------------d---~id~V~~~D 101 (208)
......+++-| -+++|++.|=+|+|.| -... +.+.... + ++.++ .+|
T Consensus 62 p~~~~~~~~~l----~~~~g~~VLdIG~GsG-~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~-~gd 135 (212)
T PRK13942 62 IHMVAIMCELL----DLKEGMKVLEIGTGSG-YHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVI-VGD 135 (212)
T ss_pred HHHHHHHHHHc----CCCCcCEEEEECCccc-HHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEE-ECC
Confidence 34444455444 3689999999999984 2221 1211110 0 13322 344
Q ss_pred ccccCCCCCcceeEEEecCCC--ccchhccceeeCCEEEEEec
Q 036071 102 LGQLGSIADERFDFSFVSSSL--DTKFVDHVVKVGGIVVIQLI 142 (208)
Q Consensus 102 l~~q~~~~D~sfDFvf~~~f~--~~~FIDRtLK~GGI~a~~l~ 142 (208)
.... ..+++.||.++..... -.+.+-+.||+||+++++++
T Consensus 136 ~~~~-~~~~~~fD~I~~~~~~~~~~~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 136 GTLG-YEENAPYDRIYVTAAGPDIPKPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred cccC-CCcCCCcCEEEECCCcccchHHHHHhhCCCcEEEEEEc
Confidence 4322 2467899999887643 22335568999999999987
No 15
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=92.43 E-value=0.23 Score=42.77 Aligned_cols=89 Identities=22% Similarity=0.403 Sum_probs=53.6
Q ss_pred chhhHHHHHHHhccccCCCCCCeEEEeecCCC----------Cc---cc--c-cc-------cccccCc---eeeeecCc
Q 036071 48 NFEFLNLLFQDLGNEGLIKKGDKALLVGSGNI----------GP---VI--A-SS-------KFFNDNE---IHLVVKSD 101 (208)
Q Consensus 48 ~~~~l~lLf~DL~~EGLLk~g~KAL~vg~~~~----------g~---~v--~-~~-------~~l~~d~---id~V~~~D 101 (208)
.......+++-|. +++|+|+|=||+|.| |. |+ | .+ +.+...+ +.++ .+|
T Consensus 57 ~P~~~a~~l~~L~----l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~-~gd 131 (209)
T PF01135_consen 57 APSMVARMLEALD----LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVV-VGD 131 (209)
T ss_dssp -HHHHHHHHHHTT----C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEE-ES-
T ss_pred HHHHHHHHHHHHh----cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEE-Ecc
Confidence 5667778888887 999999999999984 21 11 1 11 1122112 3333 334
Q ss_pred ccccCCCCCcceeEEEecCCC---ccchhccceeeCCEEEEEecC
Q 036071 102 LGQLGSIADERFDFSFVSSSL---DTKFVDHVVKVGGIVVIQLIG 143 (208)
Q Consensus 102 l~~q~~~~D~sfDFvf~~~f~---~~~FIDRtLK~GGI~a~~l~~ 143 (208)
-. ++.-..+.||-++...-- +..+++. ||+||++++++..
T Consensus 132 g~-~g~~~~apfD~I~v~~a~~~ip~~l~~q-L~~gGrLV~pi~~ 174 (209)
T PF01135_consen 132 GS-EGWPEEAPFDRIIVTAAVPEIPEALLEQ-LKPGGRLVAPIGQ 174 (209)
T ss_dssp GG-GTTGGG-SEEEEEESSBBSS--HHHHHT-EEEEEEEEEEESS
T ss_pred hh-hccccCCCcCEEEEeeccchHHHHHHHh-cCCCcEEEEEEcc
Confidence 32 232345689999987644 6788888 8999999999994
No 16
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=91.83 E-value=0.17 Score=40.79 Aligned_cols=47 Identities=26% Similarity=0.167 Sum_probs=32.4
Q ss_pred eeeeecCcccccCCCCCcceeEEEecC-CC----c---cchhccceeeCCEEEEEec
Q 036071 94 IHLVVKSDLGQLGSIADERFDFSFVSS-SL----D---TKFVDHVVKVGGIVVIQLI 142 (208)
Q Consensus 94 id~V~~~Dl~~q~~~~D~sfDFvf~~~-f~----~---~~FIDRtLK~GGI~a~~l~ 142 (208)
++++- +|.++.+ +++++||.+++.- .. + .+-+-|+||+||.+++.--
T Consensus 28 i~~~~-~d~~~lp-~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~ 82 (160)
T PLN02232 28 IEWIE-GDAIDLP-FDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDF 82 (160)
T ss_pred eEEEE-echhhCC-CCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 44433 4566555 8899999997653 11 2 3348999999999987644
No 17
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=91.57 E-value=0.43 Score=44.39 Aligned_cols=76 Identities=28% Similarity=0.307 Sum_probs=46.7
Q ss_pred CCCCCeEEEeecCCCCcccccccccccC--ceee--------------------eecCcccccCCCCCcceeEEEecC-C
Q 036071 65 IKKGDKALLVGSGNIGPVIASSKFFNDN--EIHL--------------------VVKSDLGQLGSIADERFDFSFVSS-S 121 (208)
Q Consensus 65 Lk~g~KAL~vg~~~~g~~v~~~~~l~~d--~id~--------------------V~~~Dl~~q~~~~D~sfDFvf~~~-f 121 (208)
+++|.+.|=||.|.|.....+....... ++|+ +-.+|+...+ +++++||.+++.. +
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~I~s~~~l 342 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKT-YPDNSFDVIYSRDTI 342 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCC-CCCCCEEEEEECCcc
Confidence 5788999999999842111111111111 2332 1235555444 7889999999864 2
Q ss_pred C----ccc---hhccceeeCCEEEEEe
Q 036071 122 L----DTK---FVDHVVKVGGIVVIQL 141 (208)
Q Consensus 122 ~----~~~---FIDRtLK~GGI~a~~l 141 (208)
. +.+ -+-|+||+||.+++.-
T Consensus 343 ~h~~d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 343 LHIQDKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred cccCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 2 233 3889999999988763
No 18
>PRK00811 spermidine synthase; Provisional
Probab=91.27 E-value=0.24 Score=43.97 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=27.4
Q ss_pred CCcceeEEEecCCCc---------cch---hccceeeCCEEEEEec
Q 036071 109 ADERFDFSFVSSSLD---------TKF---VDHVVKVGGIVVIQLI 142 (208)
Q Consensus 109 ~D~sfDFvf~~~f~~---------~~F---IDRtLK~GGI~a~~l~ 142 (208)
.+++||+++.+.+++ .+| +-|.||+|||+++|..
T Consensus 147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 147 TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 357999999987663 334 6799999999999876
No 19
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=91.15 E-value=0.42 Score=40.55 Aligned_cols=75 Identities=17% Similarity=0.334 Sum_probs=46.0
Q ss_pred CCCCCeEEEeecCCCCcccc-ccccc---ccCceee----------------eecCcccccCCCCCcceeEEEecCCC--
Q 036071 65 IKKGDKALLVGSGNIGPVIA-SSKFF---NDNEIHL----------------VVKSDLGQLGSIADERFDFSFVSSSL-- 122 (208)
Q Consensus 65 Lk~g~KAL~vg~~~~g~~v~-~~~~l---~~d~id~----------------V~~~Dl~~q~~~~D~sfDFvf~~~f~-- 122 (208)
++++.+.|=+|.|. |.... +.... ..-++|+ +-.+|++.. .++++||+++++.-.
T Consensus 29 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~--~~~~~fD~v~~~~~l~~ 105 (258)
T PRK01683 29 LENPRYVVDLGCGP-GNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASW--QPPQALDLIFANASLQW 105 (258)
T ss_pred CcCCCEEEEEcccC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhcc--CCCCCccEEEEccChhh
Confidence 46789999999998 53321 11111 1113332 123455432 456799999987642
Q ss_pred ---ccch---hccceeeCCEEEEEec
Q 036071 123 ---DTKF---VDHVVKVGGIVVIQLI 142 (208)
Q Consensus 123 ---~~~F---IDRtLK~GGI~a~~l~ 142 (208)
..++ +-|.||+||++++++.
T Consensus 106 ~~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 106 LPDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEECC
Confidence 2222 7789999999999865
No 20
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=90.77 E-value=0.31 Score=35.42 Aligned_cols=31 Identities=32% Similarity=0.453 Sum_probs=23.3
Q ss_pred CcceeEEEecC-----CCc-------cchhccceeeCCEEEEE
Q 036071 110 DERFDFSFVSS-----SLD-------TKFVDHVVKVGGIVVIQ 140 (208)
Q Consensus 110 D~sfDFvf~~~-----f~~-------~~FIDRtLK~GGI~a~~ 140 (208)
.+.||.++.+. +.. .+-+-+.||+||++++.
T Consensus 68 ~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 68 LEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp SSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 34699999999 222 24477899999999874
No 21
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=90.74 E-value=0.42 Score=40.92 Aligned_cols=26 Identities=12% Similarity=0.178 Sum_probs=18.9
Q ss_pred cceeEEEecCCC----c------cchhccceeeCCE
Q 036071 111 ERFDFSFVSSSL----D------TKFVDHVVKVGGI 136 (208)
Q Consensus 111 ~sfDFvf~~~f~----~------~~FIDRtLK~GGI 136 (208)
++||.++...+. + .+-+-+.||+||.
T Consensus 112 ~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~ 147 (213)
T TIGR03840 112 GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGAR 147 (213)
T ss_pred CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCe
Confidence 578988887642 1 2338899999995
No 22
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=90.30 E-value=0.26 Score=40.26 Aligned_cols=82 Identities=20% Similarity=0.276 Sum_probs=47.3
Q ss_pred cccCCCCCCeEEEeecCCCCccccccccccc----Cceeeee----------cCcccccC-------CCCCcceeEEEec
Q 036071 61 NEGLIKKGDKALLVGSGNIGPVIASSKFFND----NEIHLVV----------KSDLGQLG-------SIADERFDFSFVS 119 (208)
Q Consensus 61 ~EGLLk~g~KAL~vg~~~~g~~v~~~~~l~~----d~id~V~----------~~Dl~~q~-------~~~D~sfDFvf~~ 119 (208)
....+++|+++|-+|+|.|+-...+...... .++|+-+ ..|+.+.. .+++++||.++.+
T Consensus 26 ~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 26 KFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred HhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 4677889999999999994321111111111 1222211 12333321 2567899999985
Q ss_pred CCC-------------------ccchhccceeeCCEEEEEec
Q 036071 120 SSL-------------------DTKFVDHVVKVGGIVVIQLI 142 (208)
Q Consensus 120 ~f~-------------------~~~FIDRtLK~GGI~a~~l~ 142 (208)
.-. ..+-+-+.||+||.+++...
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 311 01226789999999998654
No 23
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=89.49 E-value=0.6 Score=39.87 Aligned_cols=83 Identities=12% Similarity=0.161 Sum_probs=49.4
Q ss_pred HHhccccCCCCCCeEEEeecCCCCcccc-ccccc-c--cCceee--------------eecCcccccCCCCCcceeEEEe
Q 036071 57 QDLGNEGLIKKGDKALLVGSGNIGPVIA-SSKFF-N--DNEIHL--------------VVKSDLGQLGSIADERFDFSFV 118 (208)
Q Consensus 57 ~DL~~EGLLk~g~KAL~vg~~~~g~~v~-~~~~l-~--~d~id~--------------V~~~Dl~~q~~~~D~sfDFvf~ 118 (208)
.+|.+.--++++.+.|=||.|. |.... +.+.. . .-++|+ +..+|+++- .++++||++++
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~-G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~--~~~~~fD~v~~ 95 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGP-GNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVRDW--KPKPDTDVVVS 95 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChhhC--CCCCCceEEEE
Confidence 4444333356778999999888 43322 21111 1 113332 124565532 46789999999
Q ss_pred cCCC-----ccch---hccceeeCCEEEEEec
Q 036071 119 SSSL-----DTKF---VDHVVKVGGIVVIQLI 142 (208)
Q Consensus 119 ~~f~-----~~~F---IDRtLK~GGI~a~~l~ 142 (208)
+... +.++ +=|.||+||.+++.+.
T Consensus 96 ~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 96 NAALQWVPEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred ehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 7632 2333 6778999999998764
No 24
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=89.31 E-value=0.48 Score=42.90 Aligned_cols=30 Identities=33% Similarity=0.480 Sum_probs=26.4
Q ss_pred ceeEEEecCCCc---------cch---hccceeeCCEEEEEe
Q 036071 112 RFDFSFVSSSLD---------TKF---VDHVVKVGGIVVIQL 141 (208)
Q Consensus 112 sfDFvf~~~f~~---------~~F---IDRtLK~GGI~a~~l 141 (208)
+||.++..++++ .+| +-|.||.+||.+.|-
T Consensus 149 ~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 149 KFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred cCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 899999999985 555 889999999999993
No 25
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=89.17 E-value=0.43 Score=40.88 Aligned_cols=42 Identities=10% Similarity=0.155 Sum_probs=29.5
Q ss_pred cccccCCCCCcceeEEEecCC-----Cc---cchhccceeeCCEEEEEec
Q 036071 101 DLGQLGSIADERFDFSFVSSS-----LD---TKFVDHVVKVGGIVVIQLI 142 (208)
Q Consensus 101 Dl~~q~~~~D~sfDFvf~~~f-----~~---~~FIDRtLK~GGI~a~~l~ 142 (208)
|.+....+++++||.++.+.- ++ .+-+-|+||+||++++..-
T Consensus 101 d~~~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 101 AAQDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred CHHHHhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEE
Confidence 444333466889999998763 12 3348899999999987654
No 26
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=88.87 E-value=0.58 Score=39.44 Aligned_cols=88 Identities=19% Similarity=0.235 Sum_probs=51.9
Q ss_pred HHHHHhccccCCCCCCeEEEeecCCCCccccccc---ccccCceeee---------------------ecCcccccCCCC
Q 036071 54 LLFQDLGNEGLIKKGDKALLVGSGNIGPVIASSK---FFNDNEIHLV---------------------VKSDLGQLGSIA 109 (208)
Q Consensus 54 lLf~DL~~EGLLk~g~KAL~vg~~~~g~~v~~~~---~l~~d~id~V---------------------~~~Dl~~q~~~~ 109 (208)
.++..+.--..+++|.+.|=+|+|.|..-..+.+ -....++|.- ..+|...-. .
T Consensus 32 ~~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~-~- 109 (187)
T PRK00107 32 HILDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFG-Q- 109 (187)
T ss_pred HHHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCC-C-
Confidence 3334444445566799999999988421111111 0111122221 133444333 2
Q ss_pred CcceeEEEecCCCc-cc---hhccceeeCCEEEEEecC
Q 036071 110 DERFDFSFVSSSLD-TK---FVDHVVKVGGIVVIQLIG 143 (208)
Q Consensus 110 D~sfDFvf~~~f~~-~~---FIDRtLK~GGI~a~~l~~ 143 (208)
+++||+++++.+.+ .. -+-|.||+||++++....
T Consensus 110 ~~~fDlV~~~~~~~~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 110 EEKFDVVTSRAVASLSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred CCCccEEEEccccCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 67999999988762 33 377899999999999773
No 27
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=88.77 E-value=1 Score=36.50 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=31.2
Q ss_pred cCcccccCCCCCcceeEEEecCCC-----c---cchhccceeeCCEEEEEe
Q 036071 99 KSDLGQLGSIADERFDFSFVSSSL-----D---TKFVDHVVKVGGIVVIQL 141 (208)
Q Consensus 99 ~~Dl~~q~~~~D~sfDFvf~~~f~-----~---~~FIDRtLK~GGI~a~~l 141 (208)
..|++..+ +++++||.++++... . .+-+-|+||+||.+++..
T Consensus 86 ~~d~~~~~-~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 86 CGDAEKLP-LEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred ecchhhCC-CCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 35666555 788999999987632 2 334789999999998764
No 28
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=88.43 E-value=0.99 Score=37.44 Aligned_cols=77 Identities=22% Similarity=0.217 Sum_probs=45.6
Q ss_pred CCCCCCeEEEeecCCCCcccc-ccccc----ccCceeee---------------------ecCcccccCCCCCcceeEEE
Q 036071 64 LIKKGDKALLVGSGNIGPVIA-SSKFF----NDNEIHLV---------------------VKSDLGQLGSIADERFDFSF 117 (208)
Q Consensus 64 LLk~g~KAL~vg~~~~g~~v~-~~~~l----~~d~id~V---------------------~~~Dl~~q~~~~D~sfDFvf 117 (208)
-+++|++.|=+|.|. |.... +.... .-.++|+- -.+|.++.+ +++++||.++
T Consensus 42 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~ 119 (231)
T TIGR02752 42 NVQAGTSALDVCCGT-ADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP-FDDNSFDYVT 119 (231)
T ss_pred CCCCCCEEEEeCCCc-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC-CCCCCccEEE
Confidence 357899999999998 43211 11111 01123321 123444443 7889999998
Q ss_pred ecCC-C----cc---chhccceeeCCEEEEEec
Q 036071 118 VSSS-L----DT---KFVDHVVKVGGIVVIQLI 142 (208)
Q Consensus 118 ~~~f-~----~~---~FIDRtLK~GGI~a~~l~ 142 (208)
.... . .. +.+-|+||+||.+++.-.
T Consensus 120 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 120 IGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred EecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 7531 1 22 336799999999887544
No 29
>PRK04266 fibrillarin; Provisional
Probab=88.29 E-value=0.44 Score=41.29 Aligned_cols=90 Identities=19% Similarity=0.282 Sum_probs=51.6
Q ss_pred hhHHHHHHHhccccCCCCCCeEEEeecCCCCcccccccccc---cC--------------------ceeeeecCccccc-
Q 036071 50 EFLNLLFQDLGNEGLIKKGDKALLVGSGNIGPVIASSKFFN---DN--------------------EIHLVVKSDLGQL- 105 (208)
Q Consensus 50 ~~l~lLf~DL~~EGLLk~g~KAL~vg~~~~g~~v~~~~~l~---~d--------------------~id~V~~~Dl~~q- 105 (208)
..-..++.++ +.==+++|++.|-+|+|.|.-..++++... .. ++..+ .+|....
T Consensus 56 ~~~~~ll~~~-~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i-~~D~~~~~ 133 (226)
T PRK04266 56 KLAAAILKGL-KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPI-LADARKPE 133 (226)
T ss_pred chHHHHHhhH-hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEE-ECCCCCcc
Confidence 4455566666 222368999999999998432222222211 11 12222 2333321
Q ss_pred --CCCCCcceeEEEecCCCc------cchhccceeeCCEEEEEec
Q 036071 106 --GSIADERFDFSFVSSSLD------TKFVDHVVKVGGIVVIQLI 142 (208)
Q Consensus 106 --~~~~D~sfDFvf~~~f~~------~~FIDRtLK~GGI~a~~l~ 142 (208)
..++ ++||++|.+.-++ .+.+-|+||+||.+++.+.
T Consensus 134 ~~~~l~-~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 134 RYAHVV-EKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred hhhhcc-ccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 1123 5699999755432 3458899999999998655
No 30
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=87.05 E-value=1.3 Score=37.07 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=26.5
Q ss_pred CCCcceeEEEecCCC---ccchhccceeeCCEEEEEecC
Q 036071 108 IADERFDFSFVSSSL---DTKFVDHVVKVGGIVVIQLIG 143 (208)
Q Consensus 108 ~~D~sfDFvf~~~f~---~~~FIDRtLK~GGI~a~~l~~ 143 (208)
..+.+||.++.+.-. +.+ +-+.||+||++++++..
T Consensus 138 ~~~~~fD~Ii~~~~~~~~~~~-l~~~L~~gG~lvi~~~~ 175 (205)
T PRK13944 138 EKHAPFDAIIVTAAASTIPSA-LVRQLKDGGVLVIPVEE 175 (205)
T ss_pred ccCCCccEEEEccCcchhhHH-HHHhcCcCcEEEEEEcC
Confidence 346799999988643 333 55789999999999873
No 31
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=85.83 E-value=0.46 Score=41.83 Aligned_cols=33 Identities=21% Similarity=0.446 Sum_probs=26.3
Q ss_pred CCCcceeEEEecCCC-----ccchhccceeeCCEEEEE
Q 036071 108 IADERFDFSFVSSSL-----DTKFVDHVVKVGGIVVIQ 140 (208)
Q Consensus 108 ~~D~sfDFvf~~~f~-----~~~FIDRtLK~GGI~a~~ 140 (208)
..+++|||+|-.... ..+-+.+.||+|||.++-
T Consensus 128 ~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 128 LLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred ccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 678999999998866 133477789999999863
No 32
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=85.63 E-value=0.85 Score=39.20 Aligned_cols=26 Identities=12% Similarity=0.220 Sum_probs=19.1
Q ss_pred cceeEEEecCCC----c------cchhccceeeCCE
Q 036071 111 ERFDFSFVSSSL----D------TKFVDHVVKVGGI 136 (208)
Q Consensus 111 ~sfDFvf~~~f~----~------~~FIDRtLK~GGI 136 (208)
.+||+++..... + .+-+-+.||+||+
T Consensus 115 ~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~ 150 (218)
T PRK13255 115 ADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCR 150 (218)
T ss_pred CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCe
Confidence 589999987642 1 3338899999985
No 33
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=84.98 E-value=1.3 Score=36.84 Aligned_cols=31 Identities=23% Similarity=0.420 Sum_probs=21.3
Q ss_pred CcceeEEEecC-CC--c-------cchhccceeeCCEEEEE
Q 036071 110 DERFDFSFVSS-SL--D-------TKFVDHVVKVGGIVVIQ 140 (208)
Q Consensus 110 D~sfDFvf~~~-f~--~-------~~FIDRtLK~GGI~a~~ 140 (208)
+++||+++++. |. + .+-+.|.||+||++.+.
T Consensus 92 ~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 92 NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 46899998864 22 1 23488999999985443
No 34
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=84.95 E-value=1.4 Score=40.88 Aligned_cols=76 Identities=22% Similarity=0.278 Sum_probs=47.5
Q ss_pred cccCCCCCCeEEEeecCCCCcccc-cccccc----------------------cCceeeeecCcccccCCCCCcceeEEE
Q 036071 61 NEGLIKKGDKALLVGSGNIGPVIA-SSKFFN----------------------DNEIHLVVKSDLGQLGSIADERFDFSF 117 (208)
Q Consensus 61 ~EGLLk~g~KAL~vg~~~~g~~v~-~~~~l~----------------------~d~id~V~~~Dl~~q~~~~D~sfDFvf 117 (208)
..++-+.+.+.|=||.|. |.... +..... .+++.+ -.+|++..+ +++++||+++
T Consensus 107 ~~~l~~~~~~VLDLGcGt-G~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~-i~gD~e~lp-~~~~sFDvVI 183 (340)
T PLN02490 107 PADLSDRNLKVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKI-IEGDAEDLP-FPTDYADRYV 183 (340)
T ss_pred hcccCCCCCEEEEEecCC-cHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeE-EeccHHhCC-CCCCceeEEE
Confidence 345556789999999998 53211 111000 012332 245666555 7899999999
Q ss_pred ecCCC-----c---cchhccceeeCCEEEE
Q 036071 118 VSSSL-----D---TKFVDHVVKVGGIVVI 139 (208)
Q Consensus 118 ~~~f~-----~---~~FIDRtLK~GGI~a~ 139 (208)
++.-. + .+-+-|+||+||.+++
T Consensus 184 s~~~L~~~~d~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 184 SAGSIEYWPDPQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred EcChhhhCCCHHHHHHHHHHhcCCCcEEEE
Confidence 87521 1 2348899999999876
No 35
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=84.93 E-value=1.5 Score=39.28 Aligned_cols=91 Identities=19% Similarity=0.316 Sum_probs=52.4
Q ss_pred hhHHHHHHHhccccCCCCCCeEEEeecCCCCcccccccccccCcee----------------------eee----cCccc
Q 036071 50 EFLNLLFQDLGNEGLIKKGDKALLVGSGNIGPVIASSKFFNDNEIH----------------------LVV----KSDLG 103 (208)
Q Consensus 50 ~~l~lLf~DL~~EGLLk~g~KAL~vg~~~~g~~v~~~~~l~~d~id----------------------~V~----~~Dl~ 103 (208)
.+-..++..|.+- -+++|+|.|.+|+..|--+-|.+-+...+|+= +|| +.-=+
T Consensus 57 KLaAai~~Gl~~~-~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~ 135 (229)
T PF01269_consen 57 KLAAAILKGLENI-PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPE 135 (229)
T ss_dssp HHHHHHHTT-S---S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGG
T ss_pred HHHHHHHcCcccc-CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChH
Confidence 4556677766654 47999999999998854444455444434311 333 22223
Q ss_pred ccCCCCCcceeEEEecCCCc--cch----hccceeeCCEEEEEec
Q 036071 104 QLGSIADERFDFSFVSSSLD--TKF----VDHVVKVGGIVVIQLI 142 (208)
Q Consensus 104 ~q~~~~D~sfDFvf~~~f~~--~~F----IDRtLK~GGI~a~~l~ 142 (208)
+-.++-+ .+|++|...-.+ ++. .+..||.||.+++-+-
T Consensus 136 ~Y~~lv~-~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 136 KYRMLVE-MVDVIFQDVAQPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp GGTTTS---EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred Hhhcccc-cccEEEecCCChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 3345544 999999998663 222 6789999999988875
No 36
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=84.44 E-value=0.7 Score=41.15 Aligned_cols=115 Identities=21% Similarity=0.325 Sum_probs=54.7
Q ss_pred HHHHHHHhccccCCCCCCeEEEeecCCCCcccccccccc----cCceee------eecCcccccCCCCCcceeEEEecCC
Q 036071 52 LNLLFQDLGNEGLIKKGDKALLVGSGNIGPVIASSKFFN----DNEIHL------VVKSDLGQLGSIADERFDFSFVSSS 121 (208)
Q Consensus 52 l~lLf~DL~~EGLLk~g~KAL~vg~~~~g~~v~~~~~l~----~d~id~------V~~~Dl~~q~~~~D~sfDFvf~~~f 121 (208)
++.+.+.|. +. .+-++|++=+||..- ++..+. .+-.|+ |.+-|+.+-| .+|+++|.+..+=-
T Consensus 60 vd~iI~~l~-----~~-~~~~viaD~GCGdA~-la~~~~~~~~V~SfDLva~n~~Vtacdia~vP-L~~~svDv~VfcLS 131 (219)
T PF05148_consen 60 VDVIIEWLK-----KR-PKSLVIADFGCGDAK-LAKAVPNKHKVHSFDLVAPNPRVTACDIANVP-LEDESVDVAVFCLS 131 (219)
T ss_dssp HHHHHHHHC-----TS--TTS-EEEES-TT-H-HHHH--S---EEEEESS-SSTTEEES-TTS-S---TT-EEEEEEES-
T ss_pred HHHHHHHHH-----hc-CCCEEEEECCCchHH-HHHhcccCceEEEeeccCCCCCEEEecCccCc-CCCCceeEEEEEhh
Confidence 456666666 22 233456655555332 222221 112343 5577898888 89999999876532
Q ss_pred C----c---cchhccceeeCCEEEEE-ecCCC--CcccCC---CCCceEEEEEEeceE--EEEEEeec
Q 036071 122 L----D---TKFVDHVVKVGGIVVIQ-LIGDI--SDTYEK---PSNYKLEYLRRYNST--ILAMRRTA 174 (208)
Q Consensus 122 ~----~---~~FIDRtLK~GGI~a~~-l~~~~--s~af~k---p~NYkvVYlrR~~~t--vvamrKt~ 174 (208)
- . .+...|+||+||++-+- +.+.- ...|-+ --.+++..-.-.+.- .+-.+|+.
T Consensus 132 LMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~~ 199 (219)
T PF05148_consen 132 LMGTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKKIR 199 (219)
T ss_dssp --SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE-S
T ss_pred hhCCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEEcC
Confidence 2 3 44478999999998653 33110 122222 345666664444433 44456775
No 37
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=84.38 E-value=1.1 Score=37.31 Aligned_cols=38 Identities=29% Similarity=0.534 Sum_probs=24.9
Q ss_pred CcccccCCCCCcceeEEEecCCC---c----cch---hccceeeCCEEEE
Q 036071 100 SDLGQLGSIADERFDFSFVSSSL---D----TKF---VDHVVKVGGIVVI 139 (208)
Q Consensus 100 ~Dl~~q~~~~D~sfDFvf~~~f~---~----~~F---IDRtLK~GGI~a~ 139 (208)
.|+...+ + +++||+++++... + ..+ +-|.||+||.+.+
T Consensus 85 ~d~~~~~-~-~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 85 VDLNNLT-F-DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred cChhhCC-c-CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 4554443 3 4679999987532 1 233 8899999998543
No 38
>PRK08317 hypothetical protein; Provisional
Probab=84.29 E-value=2.7 Score=33.87 Aligned_cols=41 Identities=27% Similarity=0.296 Sum_probs=28.2
Q ss_pred CcccccCCCCCcceeEEEecCCC-----c---cchhccceeeCCEEEEEe
Q 036071 100 SDLGQLGSIADERFDFSFVSSSL-----D---TKFVDHVVKVGGIVVIQL 141 (208)
Q Consensus 100 ~Dl~~q~~~~D~sfDFvf~~~f~-----~---~~FIDRtLK~GGI~a~~l 141 (208)
.|++..+ +++++||+++...-. + .+-+-+.||+||.+++.-
T Consensus 76 ~d~~~~~-~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 76 GDADGLP-FPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred cccccCC-CCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 3554444 678999999986421 2 233788999999988654
No 39
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=83.81 E-value=0.92 Score=42.22 Aligned_cols=74 Identities=18% Similarity=0.304 Sum_probs=44.4
Q ss_pred CCCCCeEEEeecCCCCcccccccccc--cCceee------------------eecCcccccCCCCCcceeEEEecCCC--
Q 036071 65 IKKGDKALLVGSGNIGPVIASSKFFN--DNEIHL------------------VVKSDLGQLGSIADERFDFSFVSSSL-- 122 (208)
Q Consensus 65 Lk~g~KAL~vg~~~~g~~v~~~~~l~--~d~id~------------------V~~~Dl~~q~~~~D~sfDFvf~~~f~-- 122 (208)
+++|.+.|=||.|.|+......+... ..++|+ +...|.+. + +++||.+++....
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~---l-~~~fD~Ivs~~~~eh 240 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRD---L-NGQFDRIVSVGMFEH 240 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhh---c-CCCCCEEEEeCchhh
Confidence 68999999999998543222221111 112221 11223331 1 5799999987532
Q ss_pred --c------cchhccceeeCCEEEEEec
Q 036071 123 --D------TKFVDHVVKVGGIVVIQLI 142 (208)
Q Consensus 123 --~------~~FIDRtLK~GGI~a~~l~ 142 (208)
. .+-+-|+||+||+++++..
T Consensus 241 vg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 241 VGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred CChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 1 2338899999999999865
No 40
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=83.39 E-value=2 Score=35.96 Aligned_cols=85 Identities=20% Similarity=0.226 Sum_probs=49.6
Q ss_pred hHHHHHHHhccccCCCCCCeEEEeecCCCCcccc-ccccccc--------------------------CceeeeecCccc
Q 036071 51 FLNLLFQDLGNEGLIKKGDKALLVGSGNIGPVIA-SSKFFND--------------------------NEIHLVVKSDLG 103 (208)
Q Consensus 51 ~l~lLf~DL~~EGLLk~g~KAL~vg~~~~g~~v~-~~~~l~~--------------------------d~id~V~~~Dl~ 103 (208)
....+++-|. +++|++.|=+|+|.| .... +.+.... +++.++ .+|..
T Consensus 65 ~~~~~~~~l~----~~~~~~VLDiG~GsG-~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~-~~d~~ 138 (215)
T TIGR00080 65 MVAMMTELLE----LKPGMKVLEIGTGSG-YQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVI-VGDGT 138 (215)
T ss_pred HHHHHHHHhC----CCCcCEEEEECCCcc-HHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEE-ECCcc
Confidence 3444554443 689999999999984 2211 1111111 123333 33443
Q ss_pred ccCCCCCcceeEEEecCCC--ccchhccceeeCCEEEEEec
Q 036071 104 QLGSIADERFDFSFVSSSL--DTKFVDHVVKVGGIVVIQLI 142 (208)
Q Consensus 104 ~q~~~~D~sfDFvf~~~f~--~~~FIDRtLK~GGI~a~~l~ 142 (208)
... ...++||.++.+... -.+-+-+.||+||+++++++
T Consensus 139 ~~~-~~~~~fD~Ii~~~~~~~~~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 139 QGW-EPLAPYDRIYVTAAGPKIPEALIDQLKEGGILVMPVG 178 (215)
T ss_pred cCC-cccCCCCEEEEcCCcccccHHHHHhcCcCcEEEEEEc
Confidence 221 234689999977533 22335677999999999887
No 41
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=83.37 E-value=1.1 Score=32.41 Aligned_cols=30 Identities=40% Similarity=0.535 Sum_probs=26.8
Q ss_pred hhhHHHHHHHhccccCCCCCCeEEEeecCC
Q 036071 49 FEFLNLLFQDLGNEGLIKKGDKALLVGSGN 78 (208)
Q Consensus 49 ~~~l~lLf~DL~~EGLLk~g~KAL~vg~~~ 78 (208)
-.-.+.-|.++.++|.+++|++.++++.|.
T Consensus 50 sa~~~~~L~~~~~~g~~~~Gd~vl~~~~G~ 79 (90)
T PF08541_consen 50 SASIPINLADALEEGRIKPGDRVLLVGFGA 79 (90)
T ss_dssp GGHHHHHHHHHHHTTSSCTTEEEEEEEEET
T ss_pred hhhHHHHHHHHHHcCCCCCCCEEEEEEEEh
Confidence 355678899999999999999999999888
No 42
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=82.50 E-value=0.71 Score=41.19 Aligned_cols=74 Identities=24% Similarity=0.331 Sum_probs=40.6
Q ss_pred CCCCCCeEEEeecCCCCcccccc-------------------------cccccCceeeeecCcccccCCCCCcceeEEEe
Q 036071 64 LIKKGDKALLVGSGNIGPVIASS-------------------------KFFNDNEIHLVVKSDLGQLGSIADERFDFSFV 118 (208)
Q Consensus 64 LLk~g~KAL~vg~~~~g~~v~~~-------------------------~~l~~d~id~V~~~Dl~~q~~~~D~sfDFvf~ 118 (208)
=|++|++.|=||.|-|+...... .....+.+++. ..|.+..+ .+||-+.+
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~-~~D~~~~~----~~fD~IvS 133 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVR-LQDYRDLP----GKFDRIVS 133 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEE-ES-GGG-------S-SEEEE
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEE-EeeccccC----CCCCEEEE
Confidence 38999999999999854322111 11111223322 23555333 39999988
Q ss_pred cCCC----c------cchhccceeeCCEEEEEec
Q 036071 119 SSSL----D------TKFVDHVVKVGGIVVIQLI 142 (208)
Q Consensus 119 ~~f~----~------~~FIDRtLK~GGI~a~~l~ 142 (208)
-+-. + .+-+.|.||+||.+++|..
T Consensus 134 i~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 134 IEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTI 167 (273)
T ss_dssp ESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred EechhhcChhHHHHHHHHHHHhcCCCcEEEEEec
Confidence 7622 1 2239999999999999977
No 43
>PTZ00146 fibrillarin; Provisional
Probab=82.23 E-value=1.8 Score=39.77 Aligned_cols=91 Identities=19% Similarity=0.190 Sum_probs=56.3
Q ss_pred hhHHHHHHHhccccCCCCCCeEEEeecCCCCccccccccccc------------------------CceeeeecCccccc
Q 036071 50 EFLNLLFQDLGNEGLIKKGDKALLVGSGNIGPVIASSKFFND------------------------NEIHLVVKSDLGQL 105 (208)
Q Consensus 50 ~~l~lLf~DL~~EGLLk~g~KAL~vg~~~~g~~v~~~~~l~~------------------------d~id~V~~~Dl~~q 105 (208)
.+-..++..|.+=. +++|++.|=+|++.+.-..+.+.+... .+|..+ ..|.+..
T Consensus 116 Klaa~i~~g~~~l~-IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I-~~Da~~p 193 (293)
T PTZ00146 116 KLAAAIIGGVANIP-IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPI-IEDARYP 193 (293)
T ss_pred HHHHHHHCCcceec-cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEE-ECCccCh
Confidence 45567788887764 799999999999985322222222211 122222 2343321
Q ss_pred --CCCCCcceeEEEecCCCcc---c---hhccceeeCCEEEEEec
Q 036071 106 --GSIADERFDFSFVSSSLDT---K---FVDHVVKVGGIVVIQLI 142 (208)
Q Consensus 106 --~~~~D~sfDFvf~~~f~~~---~---FIDRtLK~GGI~a~~l~ 142 (208)
-....++||++|.+...+. . -+.|+||+||.+++-+.
T Consensus 194 ~~y~~~~~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ik 238 (293)
T PTZ00146 194 QKYRMLVPMVDVIFADVAQPDQARIVALNAQYFLKNGGHFIISIK 238 (293)
T ss_pred hhhhcccCCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEEEe
Confidence 0123468999999886621 2 36899999999998554
No 44
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=82.04 E-value=1.7 Score=37.49 Aligned_cols=122 Identities=16% Similarity=0.194 Sum_probs=64.1
Q ss_pred chhhHHHHHHHhccccCCCCCCeEEEeecCCCCccccccccccc--Cceeeee-----------cCcccccCCCC--Ccc
Q 036071 48 NFEFLNLLFQDLGNEGLIKKGDKALLVGSGNIGPVIASSKFFND--NEIHLVV-----------KSDLGQLGSIA--DER 112 (208)
Q Consensus 48 ~~~~l~lLf~DL~~EGLLk~g~KAL~vg~~~~g~~v~~~~~l~~--d~id~V~-----------~~Dl~~q~~~~--D~s 112 (208)
..+.-...++-|.+ ++++|.++|=+|.|.|--.+........ .++|+=+ ...+...-.+. |.+
T Consensus 102 ~h~tt~~~l~~l~~--~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~ 179 (250)
T PRK00517 102 THPTTRLCLEALEK--LVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLK 179 (250)
T ss_pred CCHHHHHHHHHHHh--hcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCC
Confidence 44555556666654 3678999999999883111111111111 1233222 11221111122 237
Q ss_pred eeEEEecCCCc-----cchhccceeeCCEEEEEec--CCC---CcccCCCCCceEEEEEEe-ceEEEEEEe
Q 036071 113 FDFSFVSSSLD-----TKFVDHVVKVGGIVVIQLI--GDI---SDTYEKPSNYKLEYLRRY-NSTILAMRR 172 (208)
Q Consensus 113 fDFvf~~~f~~-----~~FIDRtLK~GGI~a~~l~--~~~---s~af~kp~NYkvVYlrR~-~~tvvamrK 172 (208)
||+++++-... .+.+-|.||+||++++.=. .+. -..+ +..+++++..++- ++..+.++|
T Consensus 180 fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l-~~~Gf~~~~~~~~~~W~~~~~~~ 249 (250)
T PRK00517 180 ADVIVANILANPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAY-EEAGFTLDEVLERGEWVALVGKK 249 (250)
T ss_pred cCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHH-HHCCCEEEEEEEeCCEEEEEEEe
Confidence 99999876441 3347788999999998622 111 1122 2456788766654 444444444
No 45
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=80.62 E-value=2 Score=37.74 Aligned_cols=99 Identities=15% Similarity=0.190 Sum_probs=63.1
Q ss_pred ccccCCCCCCeEEEeecCCCCcccccccccccC--------ceeeee----------cCccccc-------CCCCCccee
Q 036071 60 GNEGLIKKGDKALLVGSGNIGPVIASSKFFNDN--------EIHLVV----------KSDLGQL-------GSIADERFD 114 (208)
Q Consensus 60 ~~EGLLk~g~KAL~vg~~~~g~~v~~~~~l~~d--------~id~V~----------~~Dl~~q-------~~~~D~sfD 114 (208)
.+=+++++|.+.+=+|+..|| |+.+...- ++|+.| .+|++.. ..+++..+|
T Consensus 38 ~k~~i~~~~~~ViDLGAAPGg----WsQva~~~~~~~~~ivavDi~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~D 113 (205)
T COG0293 38 EKFKLFKPGMVVVDLGAAPGG----WSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVD 113 (205)
T ss_pred HhcCeecCCCEEEEcCCCCCc----HHHHHHHHhCCCCcEEEEECcccccCCCceEEeeeccCccHHHHHHHHcCCCCcc
Confidence 344999999999999987755 55332211 234333 4455442 235566789
Q ss_pred EEEecCCC-------------------ccchhccceeeCCEEEEEecCCC-CcccCC--CCCceEEEEEE
Q 036071 115 FSFVSSSL-------------------DTKFVDHVVKVGGIVVIQLIGDI-SDTYEK--PSNYKLEYLRR 162 (208)
Q Consensus 115 Fvf~~~f~-------------------~~~FIDRtLK~GGI~a~~l~~~~-s~af~k--p~NYkvVYlrR 162 (208)
.|.+...+ ..+++-.+||+||.+++.+-+.. .+.+.+ -.+|+.|.+++
T Consensus 114 vV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~~~K 183 (205)
T COG0293 114 VVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVKIFK 183 (205)
T ss_pred eEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeEEec
Confidence 99987765 15668999999999999887322 122222 34666666553
No 46
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=80.08 E-value=0.81 Score=33.68 Aligned_cols=48 Identities=19% Similarity=0.332 Sum_probs=30.8
Q ss_pred ceeeeecCcccccCCCCCcceeEEEecCCC-------ccchhccceeeCCEEEEE
Q 036071 93 EIHLVVKSDLGQLGSIADERFDFSFVSSSL-------DTKFVDHVVKVGGIVVIQ 140 (208)
Q Consensus 93 ~id~V~~~Dl~~q~~~~D~sfDFvf~~~f~-------~~~FIDRtLK~GGI~a~~ 140 (208)
.+.++...-.+--+.++++++||+|-.+.+ +.+.+.+.|++|||.+++
T Consensus 50 ~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 50 RVEFIQGDSPDFLPSLPDGPIDLIFIDGDHSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp TEEEEES-THHHHHHHHH--EEEEEEES---HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred eEEEEEcCcHHHHHHcCCCCEEEEEECCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 366666444443334457899999999976 344588899999999875
No 47
>PRK14967 putative methyltransferase; Provisional
Probab=79.79 E-value=2.9 Score=35.15 Aligned_cols=42 Identities=12% Similarity=0.290 Sum_probs=28.2
Q ss_pred cCcccccCCCCCcceeEEEecC-CCc-------------------------cch---hccceeeCCEEEEEec
Q 036071 99 KSDLGQLGSIADERFDFSFVSS-SLD-------------------------TKF---VDHVVKVGGIVVIQLI 142 (208)
Q Consensus 99 ~~Dl~~q~~~~D~sfDFvf~~~-f~~-------------------------~~F---IDRtLK~GGI~a~~l~ 142 (208)
.+|+.. .+++++||.++.+- |.+ ..| +-+.||+||++++-.+
T Consensus 90 ~~d~~~--~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 90 RGDWAR--AVEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred ECchhh--hccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 456543 25788999999873 221 112 4588999999887655
No 48
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=79.76 E-value=1.7 Score=38.07 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=25.5
Q ss_pred CcceeEEEecCCCc---------cch---hccceeeCCEEEEEec
Q 036071 110 DERFDFSFVSSSLD---------TKF---VDHVVKVGGIVVIQLI 142 (208)
Q Consensus 110 D~sfDFvf~~~f~~---------~~F---IDRtLK~GGI~a~~l~ 142 (208)
+++||.++.+.+++ .+| +-+.||+||+++++..
T Consensus 143 ~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 143 ENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred CCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 46899999987642 123 6689999999999855
No 49
>PRK05785 hypothetical protein; Provisional
Probab=79.63 E-value=2 Score=36.82 Aligned_cols=74 Identities=20% Similarity=0.185 Sum_probs=45.5
Q ss_pred CCCCeEEEeecCCCCcccc-cccccccC--ceeeee-------------cCcccccCCCCCcceeEEEecC----CC---
Q 036071 66 KKGDKALLVGSGNIGPVIA-SSKFFNDN--EIHLVV-------------KSDLGQLGSIADERFDFSFVSS----SL--- 122 (208)
Q Consensus 66 k~g~KAL~vg~~~~g~~v~-~~~~l~~d--~id~V~-------------~~Dl~~q~~~~D~sfDFvf~~~----f~--- 122 (208)
.++.+.|=||.|. |.... +.+....+ ++|+-+ .+|.++.+ ++|++||.++++. +.
T Consensus 50 ~~~~~VLDlGcGt-G~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp-~~d~sfD~v~~~~~l~~~~d~~ 127 (226)
T PRK05785 50 GRPKKVLDVAAGK-GELSYHFKKVFKYYVVALDYAENMLKMNLVADDKVVGSFEALP-FRDKSFDVVMSSFALHASDNIE 127 (226)
T ss_pred CCCCeEEEEcCCC-CHHHHHHHHhcCCEEEEECCCHHHHHHHHhccceEEechhhCC-CCCCCEEEEEecChhhccCCHH
Confidence 3578999999999 54432 22221111 444322 46777776 8999999999865 11
Q ss_pred -ccchhccceeeCCEEEEEec
Q 036071 123 -DTKFVDHVVKVGGIVVIQLI 142 (208)
Q Consensus 123 -~~~FIDRtLK~GGI~a~~l~ 142 (208)
..+-+-|+||+. +..+-++
T Consensus 128 ~~l~e~~RvLkp~-~~ile~~ 147 (226)
T PRK05785 128 KVIAEFTRVSRKQ-VGFIAMG 147 (226)
T ss_pred HHHHHHHHHhcCc-eEEEEeC
Confidence 144489999994 3334444
No 50
>PLN02823 spermine synthase
Probab=78.38 E-value=2.2 Score=39.42 Aligned_cols=33 Identities=33% Similarity=0.402 Sum_probs=26.1
Q ss_pred CcceeEEEecCCCc-----------cch----hccceeeCCEEEEEec
Q 036071 110 DERFDFSFVSSSLD-----------TKF----VDHVVKVGGIVVIQLI 142 (208)
Q Consensus 110 D~sfDFvf~~~f~~-----------~~F----IDRtLK~GGI~a~~l~ 142 (208)
+++||++|...+++ .+| +-+.|++|||+++|.+
T Consensus 174 ~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 174 DEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred CCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 57899999986652 234 4568999999999987
No 51
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=77.62 E-value=1.6 Score=36.34 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=27.5
Q ss_pred CCcceeEEEecCCC----ccchhccceeeCCEEEEEec
Q 036071 109 ADERFDFSFVSSSL----DTKFVDHVVKVGGIVVIQLI 142 (208)
Q Consensus 109 ~D~sfDFvf~~~f~----~~~FIDRtLK~GGI~a~~l~ 142 (208)
.+++||+++++.+. ..+-+.|.||+||++++..+
T Consensus 106 ~~~~fD~I~s~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 106 HEEQFDVITSRALASLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred ccCCccEEEehhhhCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 46899999998755 23447899999999998866
No 52
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=77.32 E-value=1.9 Score=39.58 Aligned_cols=75 Identities=17% Similarity=0.215 Sum_probs=46.1
Q ss_pred CCCCeEEEeecCCCCcccc-ccccc-ccCceeeee----------------------cCcccccCCCCCcceeEEEecCC
Q 036071 66 KKGDKALLVGSGNIGPVIA-SSKFF-NDNEIHLVV----------------------KSDLGQLGSIADERFDFSFVSSS 121 (208)
Q Consensus 66 k~g~KAL~vg~~~~g~~v~-~~~~l-~~d~id~V~----------------------~~Dl~~q~~~~D~sfDFvf~~~f 121 (208)
.+|.++|=||.|. |.... +.+.. ...+||.-+ .+|.+..+ +.+++||++++..-
T Consensus 130 ~~g~~ILDIGCG~-G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~-~~~~~FD~Vi~~~v 207 (322)
T PLN02396 130 FEGLKFIDIGCGG-GLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA-DEGRKFDAVLSLEV 207 (322)
T ss_pred CCCCEEEEeeCCC-CHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh-hccCCCCEEEEhhH
Confidence 4678999999999 43222 22110 111344332 12333333 56789999998761
Q ss_pred -----Cccch---hccceeeCCEEEEEec
Q 036071 122 -----LDTKF---VDHVVKVGGIVVIQLI 142 (208)
Q Consensus 122 -----~~~~F---IDRtLK~GGI~a~~l~ 142 (208)
++..| +-|+||+||.+++..-
T Consensus 208 LeHv~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 208 IEHVANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred HHhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 13344 8899999999998865
No 53
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=77.26 E-value=3.2 Score=36.32 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=25.6
Q ss_pred ceeEEEecCCCc---------cch---hccceeeCCEEEEEec
Q 036071 112 RFDFSFVSSSLD---------TKF---VDHVVKVGGIVVIQLI 142 (208)
Q Consensus 112 sfDFvf~~~f~~---------~~F---IDRtLK~GGI~a~~l~ 142 (208)
+||.++...+++ .+| +-+.||+|||+++|..
T Consensus 150 ~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 150 KYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp -EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 999999988872 344 7799999999999996
No 54
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=77.09 E-value=4.6 Score=35.46 Aligned_cols=30 Identities=27% Similarity=0.441 Sum_probs=22.3
Q ss_pred CcceeEEEecCCC----c------cchhccceeeCCEEEE
Q 036071 110 DERFDFSFVSSSL----D------TKFVDHVVKVGGIVVI 139 (208)
Q Consensus 110 D~sfDFvf~~~f~----~------~~FIDRtLK~GGI~a~ 139 (208)
+++||++++.... + .+-+-|.||+||++.+
T Consensus 182 ~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 182 QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 7899999987531 1 3337899999998554
No 55
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=77.01 E-value=2.4 Score=37.40 Aligned_cols=88 Identities=24% Similarity=0.354 Sum_probs=52.9
Q ss_pred hhHHHHHHHhccccCCCCCCeEEEeecCCC----------Ccccc---cc-------cccccCcee--eeecCcccccCC
Q 036071 50 EFLNLLFQDLGNEGLIKKGDKALLVGSGNI----------GPVIA---SS-------KFFNDNEIH--LVVKSDLGQLGS 107 (208)
Q Consensus 50 ~~l~lLf~DL~~EGLLk~g~KAL~vg~~~~----------g~~v~---~~-------~~l~~d~id--~V~~~Dl~~q~~ 107 (208)
-....+++-|. +++|+|.|=||.|.| +.|+- .+ +-++.-|++ .|..+|- .++.
T Consensus 59 ~~vA~m~~~L~----~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG-~~G~ 133 (209)
T COG2518 59 HMVARMLQLLE----LKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDG-SKGW 133 (209)
T ss_pred HHHHHHHHHhC----CCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCc-ccCC
Confidence 45566666664 789999999999984 11111 00 001111221 1223332 2333
Q ss_pred CCCcceeEEEecCCC---ccchhccceeeCCEEEEEecC
Q 036071 108 IADERFDFSFVSSSL---DTKFVDHVVKVGGIVVIQLIG 143 (208)
Q Consensus 108 ~~D~sfDFvf~~~f~---~~~FIDRtLK~GGI~a~~l~~ 143 (208)
=..+.||-++...-. |..++| -||+||+.+++++.
T Consensus 134 ~~~aPyD~I~Vtaaa~~vP~~Ll~-QL~~gGrlv~PvG~ 171 (209)
T COG2518 134 PEEAPYDRIIVTAAAPEVPEALLD-QLKPGGRLVIPVGS 171 (209)
T ss_pred CCCCCcCEEEEeeccCCCCHHHHH-hcccCCEEEEEEcc
Confidence 345789988877644 677776 59999999999993
No 56
>PLN02366 spermidine synthase
Probab=76.82 E-value=2.2 Score=38.89 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=27.2
Q ss_pred CCcceeEEEecCCCc---------cch---hccceeeCCEEEEEec
Q 036071 109 ADERFDFSFVSSSLD---------TKF---VDHVVKVGGIVVIQLI 142 (208)
Q Consensus 109 ~D~sfDFvf~~~f~~---------~~F---IDRtLK~GGI~a~~l~ 142 (208)
++++||+++...+++ .+| +-+.||+|||++.|..
T Consensus 162 ~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 162 PEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred cCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 356899999988773 234 6679999999999877
No 57
>PRK03612 spermidine synthase; Provisional
Probab=76.07 E-value=3.7 Score=39.75 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=25.7
Q ss_pred CcceeEEEecCCCc----------cch---hccceeeCCEEEEEec
Q 036071 110 DERFDFSFVSSSLD----------TKF---VDHVVKVGGIVVIQLI 142 (208)
Q Consensus 110 D~sfDFvf~~~f~~----------~~F---IDRtLK~GGI~a~~l~ 142 (208)
+++||+++.+..++ .+| +-+.||+||++++|..
T Consensus 371 ~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 371 AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 47999999986552 134 5679999999999976
No 58
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=75.96 E-value=2.4 Score=39.06 Aligned_cols=87 Identities=21% Similarity=0.289 Sum_probs=54.5
Q ss_pred HHhccccCCCC--CCeEEEeecCCC---------Cc-----------ccc------cccccccCceeeeecCcccccCCC
Q 036071 57 QDLGNEGLIKK--GDKALLVGSGNI---------GP-----------VIA------SSKFFNDNEIHLVVKSDLGQLGSI 108 (208)
Q Consensus 57 ~DL~~EGLLk~--g~KAL~vg~~~~---------g~-----------~v~------~~~~l~~d~id~V~~~Dl~~q~~~ 108 (208)
--+.+=++.|. |.+.|=.|.|-| |+ |.+ |++=+.+-.|+++--+-.+--..|
T Consensus 122 Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~ 201 (287)
T COG2521 122 DTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDF 201 (287)
T ss_pred HHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcC
Confidence 34556667654 888876666553 22 222 333333334666654444444569
Q ss_pred CCcceeEEEecC--CC------ccch---hccceeeCCEEEEEecC
Q 036071 109 ADERFDFSFVSS--SL------DTKF---VDHVVKVGGIVVIQLIG 143 (208)
Q Consensus 109 ~D~sfDFvf~~~--f~------~~~F---IDRtLK~GGI~a~~l~~ 143 (208)
+|+|||+++-.- |. ..+| +=|+||+||-+.=-+++
T Consensus 202 ~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~ 247 (287)
T COG2521 202 DDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGN 247 (287)
T ss_pred CccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCC
Confidence 999999998654 22 3555 77999999998777773
No 59
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=75.64 E-value=1.5 Score=43.37 Aligned_cols=36 Identities=33% Similarity=0.543 Sum_probs=27.0
Q ss_pred ccCCCCCcceeEEEecCCC-----ccch----hccceeeCCEEEE
Q 036071 104 QLGSIADERFDFSFVSSSL-----DTKF----VDHVVKVGGIVVI 139 (208)
Q Consensus 104 ~q~~~~D~sfDFvf~~~f~-----~~~F----IDRtLK~GGI~a~ 139 (208)
++..|++.+||.|=...-- ...| |||+|++||.++.
T Consensus 173 ~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~ 217 (506)
T PF03141_consen 173 QRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVL 217 (506)
T ss_pred ccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEe
Confidence 4566999999999766533 1233 9999999999764
No 60
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=75.62 E-value=4.7 Score=39.45 Aligned_cols=40 Identities=23% Similarity=0.352 Sum_probs=31.4
Q ss_pred cceeEEEecCCCc----------cch---hccceeeCCEEEEEecCCCCcccCCCCC
Q 036071 111 ERFDFSFVSSSLD----------TKF---VDHVVKVGGIVVIQLIGDISDTYEKPSN 154 (208)
Q Consensus 111 ~sfDFvf~~~f~~----------~~F---IDRtLK~GGI~a~~l~~~~s~af~kp~N 154 (208)
+.||+++..=-|| .+| .-|-||.+|+.++|.+ ++|.+|.-
T Consensus 364 ~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag----s~y~tp~v 416 (508)
T COG4262 364 DMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG----SPYFTPRV 416 (508)
T ss_pred ccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC----CCccCCce
Confidence 4899998876552 455 7899999999999999 46777653
No 61
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=75.38 E-value=5.8 Score=32.84 Aligned_cols=88 Identities=23% Similarity=0.273 Sum_probs=50.4
Q ss_pred chhhHHHHHHHhccccCCCCCCeEEEeecCCCCcccc-ccccc--------------------ccC---ceeeeecCccc
Q 036071 48 NFEFLNLLFQDLGNEGLIKKGDKALLVGSGNIGPVIA-SSKFF--------------------NDN---EIHLVVKSDLG 103 (208)
Q Consensus 48 ~~~~l~lLf~DL~~EGLLk~g~KAL~vg~~~~g~~v~-~~~~l--------------------~~d---~id~V~~~Dl~ 103 (208)
..+....+++-|. ++++.++|=+|+|. |.... +.... ... +++++ .+|..
T Consensus 63 ~p~~~~~l~~~l~----~~~~~~VLeiG~Gs-G~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~-~~d~~ 136 (212)
T PRK00312 63 QPYMVARMTELLE----LKPGDRVLEIGTGS-GYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVR-HGDGW 136 (212)
T ss_pred cHHHHHHHHHhcC----CCCCCEEEEECCCc-cHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEE-ECCcc
Confidence 3344445544332 57889999999998 43221 11110 011 13332 33432
Q ss_pred ccCCCCCcceeEEEecCCC--ccchhccceeeCCEEEEEec
Q 036071 104 QLGSIADERFDFSFVSSSL--DTKFVDHVVKVGGIVVIQLI 142 (208)
Q Consensus 104 ~q~~~~D~sfDFvf~~~f~--~~~FIDRtLK~GGI~a~~l~ 142 (208)
. ..-.+++||.++.+... -.+.+-+.||+||++++++.
T Consensus 137 ~-~~~~~~~fD~I~~~~~~~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 137 K-GWPAYAPFDRILVTAAAPEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred c-CCCcCCCcCEEEEccCchhhhHHHHHhcCCCcEEEEEEc
Confidence 2 11234789999987643 22345678999999999987
No 62
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=74.67 E-value=5.2 Score=33.84 Aligned_cols=72 Identities=14% Similarity=0.229 Sum_probs=42.9
Q ss_pred CCCCCeEEEeecCCCCcccc-ccccc---ccCceeee----------------ecCcccccCCCCCcceeEEEecCCC--
Q 036071 65 IKKGDKALLVGSGNIGPVIA-SSKFF---NDNEIHLV----------------VKSDLGQLGSIADERFDFSFVSSSL-- 122 (208)
Q Consensus 65 Lk~g~KAL~vg~~~~g~~v~-~~~~l---~~d~id~V----------------~~~Dl~~q~~~~D~sfDFvf~~~f~-- 122 (208)
+.++.++|=+|.|. |.... +...+ .-.+||+= ..+|+.. .+++++||.+++++.-
T Consensus 41 ~~~~~~VLDiGCG~-G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~--~~~~~sfD~V~~~~vL~h 117 (204)
T TIGR03587 41 LPKIASILELGANI-GMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD--PFKDNFFDLVLTKGVLIH 117 (204)
T ss_pred cCCCCcEEEEecCC-CHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC--CCCCCCEEEEEECChhhh
Confidence 45778999999999 54322 22211 11134421 1455554 4889999999997732
Q ss_pred --c---cchhccceeeCCEEEE
Q 036071 123 --D---TKFVDHVVKVGGIVVI 139 (208)
Q Consensus 123 --~---~~FIDRtLK~GGI~a~ 139 (208)
+ .+++.+..++.|..++
T Consensus 118 l~p~~~~~~l~el~r~~~~~v~ 139 (204)
T TIGR03587 118 INPDNLPTAYRELYRCSNRYIL 139 (204)
T ss_pred CCHHHHHHHHHHHHhhcCcEEE
Confidence 2 5566777776664333
No 63
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=74.18 E-value=5.1 Score=34.52 Aligned_cols=71 Identities=21% Similarity=0.331 Sum_probs=38.6
Q ss_pred cCcccccCCCCCcceeEEEecC---CC-ccc---h---hccceeeCCEEEEEe--c-CC-C---CcccCC--------CC
Q 036071 99 KSDLGQLGSIADERFDFSFVSS---SL-DTK---F---VDHVVKVGGIVVIQL--I-GD-I---SDTYEK--------PS 153 (208)
Q Consensus 99 ~~Dl~~q~~~~D~sfDFvf~~~---f~-~~~---F---IDRtLK~GGI~a~~l--~-~~-~---s~af~k--------p~ 153 (208)
..|++... ++ +.||++++.. |- +.. . +...+|+||+.+... + ++ | +..|.. -.
T Consensus 83 ~~Dl~~~~-~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~ 160 (192)
T PF03848_consen 83 VADLNDFD-FP-EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA 160 (192)
T ss_dssp E-BGCCBS--T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT
T ss_pred Eecchhcc-cc-CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC
Confidence 56776655 54 6899999754 22 222 2 455589999977632 2 11 1 111211 23
Q ss_pred CceEEEEEEeceEEEEEEeec
Q 036071 154 NYKLEYLRRYNSTILAMRRTA 174 (208)
Q Consensus 154 NYkvVYlrR~~~tvvamrKt~ 174 (208)
+++|+ .|++-+--+.||.
T Consensus 161 dW~il---~y~E~~g~~h~~d 178 (192)
T PF03848_consen 161 DWEIL---KYNEDVGELHRTD 178 (192)
T ss_dssp TSEEE---EEEEEEEEEEEES
T ss_pred CCeEE---EEEccccceeecc
Confidence 44554 5777777788874
No 64
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=73.94 E-value=12 Score=30.16 Aligned_cols=41 Identities=27% Similarity=0.309 Sum_probs=27.3
Q ss_pred cCcccccCCCCCcceeEEEecCC-C----c---cchhccceeeCCEEEEE
Q 036071 99 KSDLGQLGSIADERFDFSFVSSS-L----D---TKFVDHVVKVGGIVVIQ 140 (208)
Q Consensus 99 ~~Dl~~q~~~~D~sfDFvf~~~f-~----~---~~FIDRtLK~GGI~a~~ 140 (208)
..|+...+ +++++||.++.+.. . . .+-+-+.||+||++++.
T Consensus 94 ~~d~~~~~-~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 94 QADAEALP-FEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred ecchhcCC-CCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEE
Confidence 35555444 67789999987542 1 2 23367899999998853
No 65
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=73.32 E-value=3.1 Score=34.10 Aligned_cols=42 Identities=24% Similarity=0.574 Sum_probs=28.1
Q ss_pred Ccccc-cCCCCCcceeEEEecCC----C-ccchhccceeeCCEEEEEe
Q 036071 100 SDLGQ-LGSIADERFDFSFVSSS----L-DTKFVDHVVKVGGIVVIQL 141 (208)
Q Consensus 100 ~Dl~~-q~~~~D~sfDFvf~~~f----~-~~~FIDRtLK~GGI~a~~l 141 (208)
.|+++ .+.+++++||.++++.- . +.+++...++++|..++.+
T Consensus 62 ~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~~ii~~ 109 (194)
T TIGR02081 62 GDLDEGLEAFPDKSFDYVILSQTLQATRNPEEILDEMLRVGRHAIVSF 109 (194)
T ss_pred EEhhhcccccCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCeEEEEc
Confidence 45544 22478899999999762 1 5677777777777665544
No 66
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=73.03 E-value=3 Score=30.50 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=25.2
Q ss_pred CCCCcceeEEEecCCC-c---------------cchhccceeeCCEEEEEec
Q 036071 107 SIADERFDFSFVSSSL-D---------------TKFVDHVVKVGGIVVIQLI 142 (208)
Q Consensus 107 ~~~D~sfDFvf~~~f~-~---------------~~FIDRtLK~GGI~a~~l~ 142 (208)
.+.+++||.++++--. + .+.+.|.||+||++++-+.
T Consensus 65 ~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 65 PLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 4678999999997632 1 2237899999999998765
No 67
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=72.08 E-value=1.8 Score=37.73 Aligned_cols=100 Identities=19% Similarity=0.407 Sum_probs=62.8
Q ss_pred cCCCCCCeEEEeecCCCCcccc-ccccccc--Cceee--------------eecCcccccC-CCCCcceeEEEecCCC--
Q 036071 63 GLIKKGDKALLVGSGNIGPVIA-SSKFFND--NEIHL--------------VVKSDLGQLG-SIADERFDFSFVSSSL-- 122 (208)
Q Consensus 63 GLLk~g~KAL~vg~~~~g~~v~-~~~~l~~--d~id~--------------V~~~Dl~~q~-~~~D~sfDFvf~~~f~-- 122 (208)
.++++|+|.|=+|-|+ |.--. +..--+. .||++ |-.+|++... .|+|.|||+|+-+.=-
T Consensus 9 ~~I~pgsrVLDLGCGd-G~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~ 87 (193)
T PF07021_consen 9 EWIEPGSRVLDLGCGD-GELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQA 87 (193)
T ss_pred HHcCCCCEEEecCCCc-hHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHh
Confidence 3788999999999888 53321 1110011 12331 3366777644 6999999999987622
Q ss_pred ---ccchhccceeeCCEEEEEe--------------------cCCCCcccCCCCCceEEEEEEe
Q 036071 123 ---DTKFVDHVVKVGGIVVIQL--------------------IGDISDTYEKPSNYKLEYLRRY 163 (208)
Q Consensus 123 ---~~~FIDRtLK~GGI~a~~l--------------------~~~~s~af~kp~NYkvVYlrR~ 163 (208)
|.+-++..|++|.-+.+-. +...+-..+..+|-+..-++=|
T Consensus 88 ~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DF 151 (193)
T PF07021_consen 88 VRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDF 151 (193)
T ss_pred HhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHH
Confidence 7888999999998766533 2222345555667666555555
No 68
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=71.74 E-value=13 Score=31.28 Aligned_cols=119 Identities=22% Similarity=0.326 Sum_probs=67.5
Q ss_pred chhhHHHHHHHhccccCCCCCCeEEEeecCCCCccc-c-cc----------------cccccC--------ceeeeecCc
Q 036071 48 NFEFLNLLFQDLGNEGLIKKGDKALLVGSGNIGPVI-A-SS----------------KFFNDN--------EIHLVVKSD 101 (208)
Q Consensus 48 ~~~~l~lLf~DL~~EGLLk~g~KAL~vg~~~~g~~v-~-~~----------------~~l~~d--------~id~V~~~D 101 (208)
...+=..+|+=|.+++ -.|.+.|=+.+|.| +.- | ++ .++..| .+.++..+.
T Consensus 25 ~drvrealFniL~~~~--~~g~~vLDLFaGSG-alGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~ 101 (183)
T PF03602_consen 25 TDRVREALFNILQPRN--LEGARVLDLFAGSG-ALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDA 101 (183)
T ss_dssp SHHHHHHHHHHHHCH---HTT-EEEETT-TTS-HHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSH
T ss_pred cHHHHHHHHHHhcccc--cCCCeEEEcCCccC-ccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCH
Confidence 4455566666666652 56677766666663 110 0 11 233333 244555443
Q ss_pred ccccCC--CCCcceeEEEecC-CCc----c---chhc--cceeeCCEEEEEecCCCCcccCCCCCceEEEEEEeceEEEE
Q 036071 102 LGQLGS--IADERFDFSFVSS-SLD----T---KFVD--HVVKVGGIVVIQLIGDISDTYEKPSNYKLEYLRRYNSTILA 169 (208)
Q Consensus 102 l~~q~~--~~D~sfDFvf~~~-f~~----~---~FID--RtLK~GGI~a~~l~~~~s~af~kp~NYkvVYlrR~~~tvva 169 (208)
+..-.- -.++.||++|.+- |.. . +.+. ..|+.||++++.-+.. ..-...|.|++++--|+|..|.+.
T Consensus 102 ~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~-~~~~~~~~~~~~~~~r~yG~t~~~ 180 (183)
T PF03602_consen 102 FKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK-EDLPESPGNWELIKERKYGDTKLS 180 (183)
T ss_dssp HHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT-SSS-SEETTEEEEEEEEETTEEEE
T ss_pred HHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC-CCCccCCCCEEEEEEecCCCEEEE
Confidence 332211 2578999999875 441 1 1233 7899999999999833 123345899999999999998765
Q ss_pred E
Q 036071 170 M 170 (208)
Q Consensus 170 m 170 (208)
.
T Consensus 181 ~ 181 (183)
T PF03602_consen 181 F 181 (183)
T ss_dssp E
T ss_pred E
Confidence 4
No 69
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=71.58 E-value=2.5 Score=36.54 Aligned_cols=30 Identities=37% Similarity=0.665 Sum_probs=23.1
Q ss_pred CcceeEEEecCCCc-----cchhccceeeCCEEEE
Q 036071 110 DERFDFSFVSSSLD-----TKFVDHVVKVGGIVVI 139 (208)
Q Consensus 110 D~sfDFvf~~~f~~-----~~FIDRtLK~GGI~a~ 139 (208)
+++|||+|.....+ .+.+-+.||+||++++
T Consensus 142 ~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 142 KPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 57999999987542 3346789999999775
No 70
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=71.14 E-value=4.6 Score=29.33 Aligned_cols=32 Identities=19% Similarity=0.145 Sum_probs=24.3
Q ss_pred CcceeEEEecCCC-c----cchhccceeeCCEEEEEe
Q 036071 110 DERFDFSFVSSSL-D----TKFVDHVVKVGGIVVIQL 141 (208)
Q Consensus 110 D~sfDFvf~~~f~-~----~~FIDRtLK~GGI~a~~l 141 (208)
.++||+++...-. . .+-+-|.||+||.+++.+
T Consensus 86 ~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 86 LPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred cCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence 4689999987632 1 333789999999998875
No 71
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=70.77 E-value=2.9 Score=38.74 Aligned_cols=42 Identities=21% Similarity=0.163 Sum_probs=29.2
Q ss_pred cCcccccCCCCCcceeEE-EecCCC----c---cchhccceeeCCEEEEEe
Q 036071 99 KSDLGQLGSIADERFDFS-FVSSSL----D---TKFVDHVVKVGGIVVIQL 141 (208)
Q Consensus 99 ~~Dl~~q~~~~D~sfDFv-f~~~f~----~---~~FIDRtLK~GGI~a~~l 141 (208)
.+|=|..| |+|.+||-. .++|.. + .+..=||||+||.+....
T Consensus 165 ~~dAE~Lp-Fdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 165 EGDAEDLP-FDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred eCCcccCC-CCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 45777777 999999953 333332 2 445779999999887543
No 72
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=70.51 E-value=6.6 Score=36.10 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=25.3
Q ss_pred CCcceeEEEecCCC--ccchhccceeeCCEEEEEecC
Q 036071 109 ADERFDFSFVSSSL--DTKFVDHVVKVGGIVVIQLIG 143 (208)
Q Consensus 109 ~D~sfDFvf~~~f~--~~~FIDRtLK~GGI~a~~l~~ 143 (208)
.+++||.++...-- ....+-+.||+||.+++++..
T Consensus 146 ~~~~fD~Ii~~~g~~~ip~~~~~~LkpgG~Lvv~~~~ 182 (322)
T PRK13943 146 EFAPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINL 182 (322)
T ss_pred ccCCccEEEECCchHHhHHHHHHhcCCCCEEEEEeCC
Confidence 34689999986432 233456789999999998863
No 73
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=70.48 E-value=3.5 Score=37.37 Aligned_cols=44 Identities=25% Similarity=0.305 Sum_probs=31.2
Q ss_pred eeeeecCcccccCCCCCcceeEEEecC--CC---c---cchhccceeeCCEEEEE
Q 036071 94 IHLVVKSDLGQLGSIADERFDFSFVSS--SL---D---TKFVDHVVKVGGIVVIQ 140 (208)
Q Consensus 94 id~V~~~Dl~~q~~~~D~sfDFvf~~~--f~---~---~~FIDRtLK~GGI~a~~ 140 (208)
++++. .|+++.+. +++||++|+.+ ++ + .+-+-|.||+||.+++.
T Consensus 174 i~~~~-~d~e~lp~--~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 174 AHLLP-LGIEQLPA--LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred eEEEe-CCHHHCCC--cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 44443 46666663 78999999975 22 2 33488999999999875
No 74
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=69.25 E-value=3.4 Score=35.51 Aligned_cols=30 Identities=20% Similarity=0.512 Sum_probs=24.1
Q ss_pred cceeEEEecCCCc-----cchhccceeeCCEEEEE
Q 036071 111 ERFDFSFVSSSLD-----TKFVDHVVKVGGIVVIQ 140 (208)
Q Consensus 111 ~sfDFvf~~~f~~-----~~FIDRtLK~GGI~a~~ 140 (208)
++|||+|-..... .+.+-+.||+||+.++-
T Consensus 120 ~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 120 GQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp TSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred CceeEEEEcccccchhhHHHHHhhhccCCeEEEEc
Confidence 5899999998662 44467899999999874
No 75
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=68.74 E-value=3.5 Score=37.24 Aligned_cols=31 Identities=32% Similarity=0.865 Sum_probs=23.6
Q ss_pred CcceeEEEecCCCc--cchhc---cceeeCCEEEEE
Q 036071 110 DERFDFSFVSSSLD--TKFVD---HVVKVGGIVVIQ 140 (208)
Q Consensus 110 D~sfDFvf~~~f~~--~~FID---RtLK~GGI~a~~ 140 (208)
-.||||+|-.-+.+ ..+.| +.||+|||.++-
T Consensus 147 ~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 147 SGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred CCceeEEEEccchHHHHHHHHHHHhhcccccEEEEe
Confidence 47999999988772 34444 568999998874
No 76
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=68.62 E-value=5.3 Score=28.68 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=15.5
Q ss_pred cceeEEEecCCC-----c---cchhccceeeCCEE
Q 036071 111 ERFDFSFVSSSL-----D---TKFVDHVVKVGGIV 137 (208)
Q Consensus 111 ~sfDFvf~~~f~-----~---~~FIDRtLK~GGI~ 137 (208)
++||.+++.+-- . .+-+-+.||+||++
T Consensus 65 ~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 65 ESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred cccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 799999998733 1 23388999999985
No 77
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=68.16 E-value=11 Score=28.75 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=24.9
Q ss_pred chhhHHHHHHHhccccCCCCCCeEEEeec
Q 036071 48 NFEFLNLLFQDLGNEGLIKKGDKALLVGS 76 (208)
Q Consensus 48 ~~~~l~lLf~DL~~EGLLk~g~KAL~vg~ 76 (208)
..+.+..-.+.+.++|++++||+.++++.
T Consensus 73 ~~~~~~~a~~~~~~~g~~~~gd~vVv~~g 101 (117)
T PF02887_consen 73 TEELIAEALEYAKERGLLKPGDKVVVVAG 101 (117)
T ss_dssp HHHHHHHHHHHHHHTTSS-TTSEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCCCCEEEEEeC
Confidence 56778888888999999999999999986
No 78
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=68.12 E-value=6.4 Score=26.07 Aligned_cols=32 Identities=31% Similarity=0.541 Sum_probs=24.0
Q ss_pred CCcceeEEEecCCCc---------cchhccceeeCCEEEEE
Q 036071 109 ADERFDFSFVSSSLD---------TKFVDHVVKVGGIVVIQ 140 (208)
Q Consensus 109 ~D~sfDFvf~~~f~~---------~~FIDRtLK~GGI~a~~ 140 (208)
...+||.++.+.... .+.+.+.||+||++++.
T Consensus 63 ~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 63 ADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred cCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 456899999987542 24477889999999875
No 79
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=67.30 E-value=3.3 Score=36.77 Aligned_cols=29 Identities=38% Similarity=0.561 Sum_probs=23.2
Q ss_pred cceeEEEecCCC-----ccchhccceeeCCEEEE
Q 036071 111 ERFDFSFVSSSL-----DTKFVDHVVKVGGIVVI 139 (208)
Q Consensus 111 ~sfDFvf~~~f~-----~~~FIDRtLK~GGI~a~ 139 (208)
++|||+|-.... ..+.+-+.|++||++++
T Consensus 155 ~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 155 GTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred CcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEE
Confidence 699999999876 13446689999999876
No 80
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=66.60 E-value=7.8 Score=34.07 Aligned_cols=42 Identities=19% Similarity=0.198 Sum_probs=29.2
Q ss_pred CcccccCCCCCcceeEEEecC----CC-c--cch---hccceeeCCEEEEEec
Q 036071 100 SDLGQLGSIADERFDFSFVSS----SL-D--TKF---VDHVVKVGGIVVIQLI 142 (208)
Q Consensus 100 ~Dl~~q~~~~D~sfDFvf~~~----f~-~--~~F---IDRtLK~GGI~a~~l~ 142 (208)
.|+.+.+ +++++||.+|..+ |+ + .+. +-|.||+||++++--+
T Consensus 192 ~dl~~~~-~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 192 HNLLAES-PPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred ccCCCCC-CccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 4555444 5789999999955 22 1 123 7889999999987655
No 81
>PRK13699 putative methylase; Provisional
Probab=66.27 E-value=2.6 Score=36.56 Aligned_cols=41 Identities=15% Similarity=0.168 Sum_probs=28.7
Q ss_pred ccccCCCCCcceeEEEecC-----CC------------------ccchhccceeeCCEEEEEec
Q 036071 102 LGQLGSIADERFDFSFVSS-----SL------------------DTKFVDHVVKVGGIVVIQLI 142 (208)
Q Consensus 102 l~~q~~~~D~sfDFvf~~~-----f~------------------~~~FIDRtLK~GGI~a~~l~ 142 (208)
++-...++|+|+|.++|+- +. ....+-|+||+||++++..+
T Consensus 10 le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~ 73 (227)
T PRK13699 10 IDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYG 73 (227)
T ss_pred HHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 4445568999999999982 11 01225699999999987654
No 82
>PLN02476 O-methyltransferase
Probab=65.68 E-value=3 Score=37.90 Aligned_cols=30 Identities=30% Similarity=0.719 Sum_probs=23.6
Q ss_pred CcceeEEEecCCCc-----cchhccceeeCCEEEE
Q 036071 110 DERFDFSFVSSSLD-----TKFVDHVVKVGGIVVI 139 (208)
Q Consensus 110 D~sfDFvf~~~f~~-----~~FIDRtLK~GGI~a~ 139 (208)
+++|||+|-....+ .+.+-+.||+||+.++
T Consensus 192 ~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 192 GSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 46899999988762 3446678999999876
No 83
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=65.63 E-value=6.3 Score=30.76 Aligned_cols=42 Identities=29% Similarity=0.458 Sum_probs=29.2
Q ss_pred CcccccCC-CCCcceeEEEecCCC-----c---cchhccceeeCCEEEEEec
Q 036071 100 SDLGQLGS-IADERFDFSFVSSSL-----D---TKFVDHVVKVGGIVVIQLI 142 (208)
Q Consensus 100 ~Dl~~q~~-~~D~sfDFvf~~~f~-----~---~~FIDRtLK~GGI~a~~l~ 142 (208)
+|+++.+. ++ +.||.+++++.. . .+.+-|.||+||++.+.-.
T Consensus 61 ~d~~~l~~~~~-~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 61 GDIEDLPQELE-EKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp SBTTCGCGCSS-TTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eehhccccccC-CCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 45554221 44 899999998732 2 3458899999999877655
No 84
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=65.50 E-value=6.2 Score=32.59 Aligned_cols=33 Identities=30% Similarity=0.453 Sum_probs=24.6
Q ss_pred CcceeEEEecCCC-----ccchhccceeeCCEEEEEec
Q 036071 110 DERFDFSFVSSSL-----DTKFVDHVVKVGGIVVIQLI 142 (208)
Q Consensus 110 D~sfDFvf~~~f~-----~~~FIDRtLK~GGI~a~~l~ 142 (208)
+++||.+|.++.. -.+.+-+.||+||.+++...
T Consensus 109 ~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 109 NEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred CCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEee
Confidence 4689999996643 24457789999999987544
No 85
>PRK01581 speE spermidine synthase; Validated
Probab=65.21 E-value=5.4 Score=38.00 Aligned_cols=33 Identities=12% Similarity=0.179 Sum_probs=26.3
Q ss_pred CcceeEEEecCCCc----------cch---hccceeeCCEEEEEec
Q 036071 110 DERFDFSFVSSSLD----------TKF---VDHVVKVGGIVVIQLI 142 (208)
Q Consensus 110 D~sfDFvf~~~f~~----------~~F---IDRtLK~GGI~a~~l~ 142 (208)
+++||++|.+..++ .+| +-+.||+|||+++|..
T Consensus 224 ~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 224 SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 46899999997663 234 6779999999999965
No 86
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=65.02 E-value=18 Score=29.16 Aligned_cols=37 Identities=14% Similarity=0.121 Sum_probs=23.7
Q ss_pred hccceeeCCEEEEEecCCC--C--cccCCCCCceEEEEEEe
Q 036071 127 VDHVVKVGGIVVIQLIGDI--S--DTYEKPSNYKLEYLRRY 163 (208)
Q Consensus 127 IDRtLK~GGI~a~~l~~~~--s--~af~kp~NYkvVYlrR~ 163 (208)
+.|.||+||.+++...... . -.+-+..+|.+..+.++
T Consensus 126 ~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~ 166 (179)
T TIGR00537 126 LPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAER 166 (179)
T ss_pred HHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEe
Confidence 6699999999888665221 1 12334556777766665
No 87
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=64.52 E-value=4 Score=33.66 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=22.8
Q ss_pred cceeEEEecCCC-----cc---chhccceeeCCEEEEEe
Q 036071 111 ERFDFSFVSSSL-----DT---KFVDHVVKVGGIVVIQL 141 (208)
Q Consensus 111 ~sfDFvf~~~f~-----~~---~FIDRtLK~GGI~a~~l 141 (208)
++||++++.... .. +-+-|.||+||.++++-
T Consensus 66 ~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 66 DTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred CCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 489999986522 22 33789999999998764
No 88
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.93 E-value=1.4 Score=38.26 Aligned_cols=68 Identities=19% Similarity=0.238 Sum_probs=45.3
Q ss_pred EEeecCCCCccc-ccccccccC--ceeeeecCcccccCCCCCcceeEEEecCCC----------ccchhccceeeCCEEE
Q 036071 72 LLVGSGNIGPVI-ASSKFFNDN--EIHLVVKSDLGQLGSIADERFDFSFVSSSL----------DTKFVDHVVKVGGIVV 138 (208)
Q Consensus 72 L~vg~~~~g~~v-~~~~~l~~d--~id~V~~~Dl~~q~~~~D~sfDFvf~~~f~----------~~~FIDRtLK~GGI~a 138 (208)
|.||+|. -.+. .|..+=..+ ++|+|-..-. .++|.|+|.|......+- .++.--|+||+||++.
T Consensus 7 v~ig~G~-~r~npgWi~~d~ed~~~vdlvc~As~--e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~Lr 83 (185)
T COG4627 7 VKIGAGG-KRVNPGWIITDVEDRPEVDLVCRASN--ESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLR 83 (185)
T ss_pred EEEeccc-cccCCCceeeehhcccccchhhhhhh--hccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEE
Confidence 6677766 3222 244433333 5888765443 468999999988766532 3566889999999987
Q ss_pred EEec
Q 036071 139 IQLI 142 (208)
Q Consensus 139 ~~l~ 142 (208)
.-+-
T Consensus 84 iAvP 87 (185)
T COG4627 84 IAVP 87 (185)
T ss_pred EEcC
Confidence 6665
No 89
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=61.84 E-value=6.2 Score=36.13 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=27.4
Q ss_pred CcccccCCCCCcceeEEEecC--CC---ccch---hccceeeCCEEEEE
Q 036071 100 SDLGQLGSIADERFDFSFVSS--SL---DTKF---VDHVVKVGGIVVIQ 140 (208)
Q Consensus 100 ~Dl~~q~~~~D~sfDFvf~~~--f~---~~~F---IDRtLK~GGI~a~~ 140 (208)
.+++..+ ..++||.+|+.+ ++ +..+ +-|+||+||.+++.
T Consensus 178 ~~ie~lp--~~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 178 LGIEQLH--ELYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred CCHHHCC--CCCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEE
Confidence 3444444 245899999987 22 3344 66999999999986
No 90
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=60.28 E-value=11 Score=31.28 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=25.2
Q ss_pred CCCcceeEEEecCCC-----c---cchhccceeeCCEEEEEec
Q 036071 108 IADERFDFSFVSSSL-----D---TKFVDHVVKVGGIVVIQLI 142 (208)
Q Consensus 108 ~~D~sfDFvf~~~f~-----~---~~FIDRtLK~GGI~a~~l~ 142 (208)
..+++||+++.+... + .+.+.+.||+||.+++-..
T Consensus 110 ~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 110 EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 356899999875421 1 3558899999999876543
No 91
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=59.64 E-value=28 Score=28.30 Aligned_cols=40 Identities=30% Similarity=0.329 Sum_probs=25.5
Q ss_pred CcccccCCCCCcceeEEEecCC-C----ccch---hccceeeCCEEEEE
Q 036071 100 SDLGQLGSIADERFDFSFVSSS-L----DTKF---VDHVVKVGGIVVIQ 140 (208)
Q Consensus 100 ~Dl~~q~~~~D~sfDFvf~~~f-~----~~~F---IDRtLK~GGI~a~~ 140 (208)
.|+...+ +++++||.++.+.. . ..++ +-+.||+||++.+-
T Consensus 110 ~d~~~~~-~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 110 GDAEALP-FPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred cccccCC-CCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEE
Confidence 3444333 56789999986432 1 2222 67889999987653
No 92
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=58.34 E-value=29 Score=27.80 Aligned_cols=77 Identities=10% Similarity=0.166 Sum_probs=46.1
Q ss_pred eeeeecCcccccCCCCCcceeEEEecC-CC-ccchhccce-----eeCCEEEEEec------CCC-CcccCC-----CCC
Q 036071 94 IHLVVKSDLGQLGSIADERFDFSFVSS-SL-DTKFVDHVV-----KVGGIVVIQLI------GDI-SDTYEK-----PSN 154 (208)
Q Consensus 94 id~V~~~Dl~~q~~~~D~sfDFvf~~~-f~-~~~FIDRtL-----K~GGI~a~~l~------~~~-s~af~k-----p~N 154 (208)
++++ .+|+.+.+ +++++||.++++- |. ..+.+.+++ +.+|++.+|-. ..| +..+.. ..-
T Consensus 61 v~ii-~~D~~~~~-~~~~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~a~rl~~~~~~~~y~~lsv~~~~~ 138 (169)
T smart00650 61 LTVI-HGDALKFD-LPKLQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVARRLAAKPGSKDYGRLSVLLQPY 138 (169)
T ss_pred EEEE-ECchhcCC-ccccCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHHHhHHhcCCCCCCcccHHHHHHHHH
Confidence 5544 56666654 6777899999876 33 344444444 47899999987 111 111111 344
Q ss_pred ceEEEEEEe-----------ceEEEEEEe
Q 036071 155 YKLEYLRRY-----------NSTILAMRR 172 (208)
Q Consensus 155 YkvVYlrR~-----------~~tvvamrK 172 (208)
|++-+++.. ||+++-+++
T Consensus 139 ~~~~~~~~v~~~~F~P~PkV~s~~~~~~~ 167 (169)
T smart00650 139 FDVKILFKVPPEAFRPPPKVDSAVVRLER 167 (169)
T ss_pred eeEEEEEEEChhhCCCCCCceEEEEEEEE
Confidence 567777665 677776654
No 93
>PRK04457 spermidine synthase; Provisional
Probab=57.78 E-value=9.7 Score=33.50 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=25.2
Q ss_pred cceeEEEecCCCc---------cch---hccceeeCCEEEEEec
Q 036071 111 ERFDFSFVSSSLD---------TKF---VDHVVKVGGIVVIQLI 142 (208)
Q Consensus 111 ~sfDFvf~~~f~~---------~~F---IDRtLK~GGI~a~~l~ 142 (208)
++||++|.+.|+. .+| +-+.||+||++++.+.
T Consensus 135 ~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 135 HSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred CCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 5899999988762 244 4578999999999765
No 94
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=57.56 E-value=15 Score=33.65 Aligned_cols=90 Identities=18% Similarity=0.203 Sum_probs=60.0
Q ss_pred chhhHHHHHHHhcccc-CCCCCCeEEEeecCCCCcccc-ccc----------------ccccCceeeeecCcccccCCCC
Q 036071 48 NFEFLNLLFQDLGNEG-LIKKGDKALLVGSGNIGPVIA-SSK----------------FFNDNEIHLVVKSDLGQLGSIA 109 (208)
Q Consensus 48 ~~~~l~lLf~DL~~EG-LLk~g~KAL~vg~~~~g~~v~-~~~----------------~l~~d~id~V~~~Dl~~q~~~~ 109 (208)
..+++-.|++.=..+. ==.+.++.|=||+|+ |.+.. .++ -+.+.|.+++...|+++.
T Consensus 74 S~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGd-G~VT~~l~~~f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~---- 148 (265)
T PF05219_consen 74 SEEQFRKLLRISGFSWNPDWKDKSLLDLGAGD-GEVTERLAPLFKEVYATEASPPMRWRLSKKGFTVLDIDDWQQT---- 148 (265)
T ss_pred cHHHHHHHhhhhccCCCCcccCCceEEecCCC-cHHHHHHHhhcceEEeecCCHHHHHHHHhCCCeEEehhhhhcc----
Confidence 4567777776332111 012457889999999 77765 332 234458889999998754
Q ss_pred CcceeEEEecC-----CCccch---hccceeeCCEEEEEec
Q 036071 110 DERFDFSFVSS-----SLDTKF---VDHVVKVGGIVVIQLI 142 (208)
Q Consensus 110 D~sfDFvf~~~-----f~~~~F---IDRtLK~GGI~a~~l~ 142 (208)
+..||.+-..+ +.|..+ |-+.||++|++++-+-
T Consensus 149 ~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 149 DFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred CCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEE
Confidence 46899988776 225444 7789999999877654
No 95
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=55.40 E-value=12 Score=30.88 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=26.1
Q ss_pred CCCcceeEEEecCCCc-------------cch---hccceeeCCEEEEEec
Q 036071 108 IADERFDFSFVSSSLD-------------TKF---VDHVVKVGGIVVIQLI 142 (208)
Q Consensus 108 ~~D~sfDFvf~~~f~~-------------~~F---IDRtLK~GGI~a~~l~ 142 (208)
+++++||.++.+--++ .+| +-|+||+||.+.+...
T Consensus 83 ~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 83 FPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 6778999999863221 233 7899999999988766
No 96
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=55.18 E-value=15 Score=31.13 Aligned_cols=14 Identities=21% Similarity=0.489 Sum_probs=13.1
Q ss_pred cceeeCCEEEEEec
Q 036071 129 HVVKVGGIVVIQLI 142 (208)
Q Consensus 129 RtLK~GGI~a~~l~ 142 (208)
+.||+||++++.++
T Consensus 226 ~~Lk~gG~l~~e~g 239 (275)
T PRK09328 226 RYLKPGGWLLLEIG 239 (275)
T ss_pred HhcccCCEEEEEEC
Confidence 89999999999886
No 97
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=53.91 E-value=39 Score=32.27 Aligned_cols=19 Identities=5% Similarity=-0.088 Sum_probs=13.6
Q ss_pred cccccCCCCCcceeEEEecC
Q 036071 101 DLGQLGSIADERFDFSFVSS 120 (208)
Q Consensus 101 Dl~~q~~~~D~sfDFvf~~~ 120 (208)
.|..+. ||+.|++|++++.
T Consensus 152 SFY~RL-fP~~Slh~~~Ss~ 170 (386)
T PLN02668 152 SFYRRL-FPARSIDVFHSAF 170 (386)
T ss_pred cccccc-cCCCceEEEEeec
Confidence 455444 8888888888765
No 98
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=53.39 E-value=5.4 Score=35.70 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=15.5
Q ss_pred cchhccceeeCCEEEEEec
Q 036071 124 TKFVDHVVKVGGIVVIQLI 142 (208)
Q Consensus 124 ~~FIDRtLK~GGI~a~~l~ 142 (208)
..++++.|++|||+++---
T Consensus 164 ~d~v~~ll~~~gifvItSC 182 (227)
T KOG1271|consen 164 LDSVEKLLSPGGIFVITSC 182 (227)
T ss_pred hhhHhhccCCCcEEEEEec
Confidence 4569999999999987644
No 99
>cd08770 DAP_dppA_3 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=52.11 E-value=22 Score=32.30 Aligned_cols=69 Identities=16% Similarity=0.208 Sum_probs=45.5
Q ss_pred cccCCCCCCeEEEeecCCCCcccccccccccC---ceeeeecCcccccCCCC--CcceeEEEecCCCc-cc----hhccc
Q 036071 61 NEGLIKKGDKALLVGSGNIGPVIASSKFFNDN---EIHLVVKSDLGQLGSIA--DERFDFSFVSSSLD-TK----FVDHV 130 (208)
Q Consensus 61 ~EGLLk~g~KAL~vg~~~~g~~v~~~~~l~~d---~id~V~~~Dl~~q~~~~--D~sfDFvf~~~f~~-~~----FIDRt 130 (208)
=||++..|..-++|.+.-++ .+.++-++ .+.+|+-.--+...|+. |++||-+|.-||+. +. .+++|
T Consensus 43 iega~~aGa~eIvV~DsHg~----~~Nll~e~L~~~a~lI~G~~~rp~~Mm~Gld~s~D~v~fiGYHa~ag~~~gvL~HT 118 (263)
T cd08770 43 CEGAIEAGATEIVVKDAHGS----GRNILPSKLPDNVKLIRGWSGHPYCMVEGLDESFDAVMFIGYHSAAGSPGNPLAHT 118 (263)
T ss_pred HHHHHHcCCcEEEEEcCCCC----ccCcChHHCCcceEEEeCCCCCcchHhhccccCccEEEEEecCCccCCCCCccccc
Confidence 39999999999999986622 22344333 48888632223334443 78999999999993 32 34776
Q ss_pred eee
Q 036071 131 VKV 133 (208)
Q Consensus 131 LK~ 133 (208)
.-.
T Consensus 119 ~~~ 121 (263)
T cd08770 119 LTG 121 (263)
T ss_pred ccc
Confidence 533
No 100
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=52.01 E-value=29 Score=29.73 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=21.0
Q ss_pred cceeEEEecC-CC---c------cchhccceeeCCEEEEE
Q 036071 111 ERFDFSFVSS-SL---D------TKFVDHVVKVGGIVVIQ 140 (208)
Q Consensus 111 ~sfDFvf~~~-f~---~------~~FIDRtLK~GGI~a~~ 140 (208)
+.+|+++.+. ++ + .+-|-|.||+||++++.
T Consensus 124 ~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 124 ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 4588887643 21 1 23388999999999875
No 101
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=51.01 E-value=17 Score=33.03 Aligned_cols=44 Identities=23% Similarity=0.301 Sum_probs=32.1
Q ss_pred eeecCcccccCCCCCcceeEE-----EecCCCc---cchhccceeeCCEEEE
Q 036071 96 LVVKSDLGQLGSIADERFDFS-----FVSSSLD---TKFVDHVVKVGGIVVI 139 (208)
Q Consensus 96 ~V~~~Dl~~q~~~~D~sfDFv-----f~~~f~~---~~FIDRtLK~GGI~a~ 139 (208)
.....+.|+.+-.+|.|+|-+ +-+.-++ ..-+-|+||+||+..+
T Consensus 129 ~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 129 RFVVADGENLPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred EEEeechhcCcccccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEE
Confidence 344667777777899999954 4555553 4559999999998765
No 102
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=50.84 E-value=15 Score=30.75 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=25.6
Q ss_pred CCCcceeEEEecCCCc----------------cchhccceeeCCEEEEEec
Q 036071 108 IADERFDFSFVSSSLD----------------TKFVDHVVKVGGIVVIQLI 142 (208)
Q Consensus 108 ~~D~sfDFvf~~~f~~----------------~~FIDRtLK~GGI~a~~l~ 142 (208)
+++++||.++.+--++ .+-+-|.||+||++.+...
T Consensus 107 ~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 107 FPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred cCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 7789999998752110 2337889999999998754
No 103
>cd08663 DAP_dppA_1 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=50.30 E-value=54 Score=29.87 Aligned_cols=137 Identities=16% Similarity=0.234 Sum_probs=74.5
Q ss_pred ccCCCCCCeEEEeecCCCCcccccccccccC---ceeeee--cCcccccCCCCCcceeEEEecCCCc-c----chhccce
Q 036071 62 EGLIKKGDKALLVGSGNIGPVIASSKFFNDN---EIHLVV--KSDLGQLGSIADERFDFSFVSSSLD-T----KFVDHVV 131 (208)
Q Consensus 62 EGLLk~g~KAL~vg~~~~g~~v~~~~~l~~d---~id~V~--~~Dl~~q~~~~D~sfDFvf~~~f~~-~----~FIDRtL 131 (208)
||.+.-|..-++|.++-++ .+.++-++ ...+|+ +.-+-+..-+ |++||-+|.-||+. + ..+++|.
T Consensus 44 ega~~aGa~eVvV~DsHg~----~~Nll~e~L~~~a~LI~G~pkp~~Mm~Gl-d~~~D~v~fiGYHa~ag~~~gvL~HT~ 118 (266)
T cd08663 44 EGALEAGATEVLVNDSHGS----MRNLLPEDLDPRARLISGSPKPLGMMEGL-DEGFDAALFVGYHARAGTPPGVLSHTY 118 (266)
T ss_pred HHHHHcCCcEEEEEcCCCC----ccCcChHHCCccEEEEecCCCCchhhhcc-ccCcCEEEEEecCCCcCCCCCcccccc
Confidence 9999999999999986622 22344443 478885 3333322212 89999999999993 2 2346665
Q ss_pred eeCCEEEEEecCCCC------cccCCCCCceEEEEE---------E--eceE-EEEEEeecccccccccchhhccccccH
Q 036071 132 KVGGIVVIQLIGDIS------DTYEKPSNYKLEYLR---------R--YNST-ILAMRRTALANELIDSSAKRQLCQWTL 193 (208)
Q Consensus 132 K~GGI~a~~l~~~~s------~af~kp~NYkvVYlr---------R--~~~t-vvamrKt~~~~~~~~~~~~Rkl~~~~~ 193 (208)
-.+.|.-+.|++.+- .+.--..|--|+.+- | +..+ .+++||. .+......-++-+-|..-.
T Consensus 119 s~~~v~~v~iNG~~vgE~glna~~Ag~~gVPV~lVsGDd~~~~ea~~~~p~i~tv~vK~~-~gr~aa~~~~p~~a~~~I~ 197 (266)
T cd08663 119 SGGAVRDVRLNGREVGETGLNAAVAGEYGVPVVLVTGDDAACAEARELGPGVETVAVKEA-IGRFAARCLPPAEARALIR 197 (266)
T ss_pred cccceEEEEECCEEcCHHHHHHHHHhhcCCCEEEEecCHHHHHHHHhhCCCcEEEEEecc-cCCCccccCCHHHHHHHHH
Confidence 444344444432211 111112233333331 1 2233 5666655 3433444555556666656
Q ss_pred HHHHHHHhhhh
Q 036071 194 EAKKAALKDLE 204 (208)
Q Consensus 194 ~akk~AL~~LE 204 (208)
++=++||+++.
T Consensus 198 ~~a~~Al~~~~ 208 (266)
T cd08663 198 EAAAEAVRRLG 208 (266)
T ss_pred HHHHHHHHhcc
Confidence 65557776554
No 104
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=49.96 E-value=15 Score=34.37 Aligned_cols=34 Identities=29% Similarity=0.500 Sum_probs=25.8
Q ss_pred CCCCcceeEEEecCCC----c---cch---hccceeeCCEEEEE
Q 036071 107 SIADERFDFSFVSSSL----D---TKF---VDHVVKVGGIVVIQ 140 (208)
Q Consensus 107 ~~~D~sfDFvf~~~f~----~---~~F---IDRtLK~GGI~a~~ 140 (208)
.+++++||+++.+..- + .++ +.|+||+||++++.
T Consensus 98 ~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 98 NISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred CCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 4788999999987521 2 233 78999999999775
No 105
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=49.08 E-value=37 Score=30.31 Aligned_cols=76 Identities=20% Similarity=0.321 Sum_probs=44.1
Q ss_pred CCCCCeEEEeecCCCCcccc-ccccc-----------------------ccCcee-e--eecCcccccCCCC---Cccee
Q 036071 65 IKKGDKALLVGSGNIGPVIA-SSKFF-----------------------NDNEIH-L--VVKSDLGQLGSIA---DERFD 114 (208)
Q Consensus 65 Lk~g~KAL~vg~~~~g~~v~-~~~~l-----------------------~~d~id-~--V~~~Dl~~q~~~~---D~sfD 114 (208)
|++|++.+=-|.|. |.-.+ +.+.+ +.++++ . +...|.-+.+ |+ +..+|
T Consensus 38 i~pG~~VlEaGtGS-G~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g-~~~~~~~~~D 115 (247)
T PF08704_consen 38 IRPGSRVLEAGTGS-GSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEG-FDEELESDFD 115 (247)
T ss_dssp --TT-EEEEE--TT-SHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG---STT-TTSEE
T ss_pred CCCCCEEEEecCCc-HHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccc-ccccccCccc
Confidence 78999999888888 43333 22221 122222 2 3366665555 33 36899
Q ss_pred EEEecCCCccch---hccce-eeCCEEEEEec
Q 036071 115 FSFVSSSLDTKF---VDHVV-KVGGIVVIQLI 142 (208)
Q Consensus 115 Fvf~~~f~~~~F---IDRtL-K~GGI~a~~l~ 142 (208)
-+|-.-=+|+.. +-+.| |+||+++...-
T Consensus 116 avfLDlp~Pw~~i~~~~~~L~~~gG~i~~fsP 147 (247)
T PF08704_consen 116 AVFLDLPDPWEAIPHAKRALKKPGGRICCFSP 147 (247)
T ss_dssp EEEEESSSGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred EEEEeCCCHHHHHHHHHHHHhcCCceEEEECC
Confidence 999888776555 67899 99999999865
No 106
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=48.08 E-value=11 Score=30.45 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=23.3
Q ss_pred cceeEEEecCCC-------------------ccchhccceeeCCEEEEEecCC
Q 036071 111 ERFDFSFVSSSL-------------------DTKFVDHVVKVGGIVVIQLIGD 144 (208)
Q Consensus 111 ~sfDFvf~~~f~-------------------~~~FIDRtLK~GGI~a~~l~~~ 144 (208)
+.||++++..=. ...+.-..||+||.+++.+-..
T Consensus 90 ~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~ 142 (181)
T PF01728_consen 90 EKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG 142 (181)
T ss_dssp CSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred cCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence 699999999811 1334667799999999888743
No 107
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=47.15 E-value=53 Score=28.36 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=21.0
Q ss_pred cceeEEEecCCC---c-------cchhccceeeCCE
Q 036071 111 ERFDFSFVSSSL---D-------TKFVDHVVKVGGI 136 (208)
Q Consensus 111 ~sfDFvf~~~f~---~-------~~FIDRtLK~GGI 136 (208)
++||+++...+. + ++-+-+.||+||.
T Consensus 115 g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~ 150 (218)
T PF05724_consen 115 GKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGR 150 (218)
T ss_dssp HSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEE
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCc
Confidence 479999999876 1 4448899999999
No 108
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=46.08 E-value=15 Score=33.01 Aligned_cols=46 Identities=17% Similarity=0.152 Sum_probs=32.3
Q ss_pred ecCcccccCCCCCcceeEEEecC-CC----------------ccchhccceeeCCEEEEEecCC
Q 036071 98 VKSDLGQLGSIADERFDFSFVSS-SL----------------DTKFVDHVVKVGGIVVIQLIGD 144 (208)
Q Consensus 98 ~~~Dl~~q~~~~D~sfDFvf~~~-f~----------------~~~FIDRtLK~GGI~a~~l~~~ 144 (208)
-.+|..+.+ +++++||.++++- |. -.+.+-|+||+||.+++.+.+.
T Consensus 235 ~~~D~~~l~-~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 235 KRGDATKLP-LSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred EecchhcCC-cccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 356776654 5688999999961 10 1233678999999999888743
No 109
>cd08769 DAP_dppA_2 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=44.85 E-value=36 Score=31.00 Aligned_cols=135 Identities=18% Similarity=0.195 Sum_probs=73.0
Q ss_pred ccCCCCCCeEEEeecCCCCcccccccccccC---ceeeeecCcccccCCCC--CcceeEEEecCCCc-----cchhccce
Q 036071 62 EGLIKKGDKALLVGSGNIGPVIASSKFFNDN---EIHLVVKSDLGQLGSIA--DERFDFSFVSSSLD-----TKFVDHVV 131 (208)
Q Consensus 62 EGLLk~g~KAL~vg~~~~g~~v~~~~~l~~d---~id~V~~~Dl~~q~~~~--D~sfDFvf~~~f~~-----~~FIDRtL 131 (208)
||++..|..-++|.+.-++ - ..++-++ ...+|+-.- +...|+. |+|||-+|.-||+. -...|+|.
T Consensus 44 ega~~aGa~eIvV~DsHg~-~---~Nl~~e~L~~~a~LI~G~p-rp~~Mm~Gld~s~D~v~fiGYHa~aG~~~gvl~HT~ 118 (270)
T cd08769 44 EELFESGFEEIVVADSHGR-M---DNIDYEELDPRVSLVSGYP-RPLSMMTGLDESFDAVLFIGYHAGAGTPKGIMDHTY 118 (270)
T ss_pred HHHHHcCCcEEEEEcCCCC-c---CCCChHHCCcceEEEecCC-CCchHhhccccCccEEEEEecCCCCCCCCCcccccc
Confidence 8999999999999976622 2 2333332 477887432 4444444 88999999999992 23456665
Q ss_pred eeCCEEEEEecCCCCc------ccCCCCCceEEEEE----------Ee--ceEEEEEEeecccccccccchhhccccccH
Q 036071 132 KVGGIVVIQLIGDISD------TYEKPSNYKLEYLR----------RY--NSTILAMRRTALANELIDSSAKRQLCQWTL 193 (208)
Q Consensus 132 K~GGI~a~~l~~~~s~------af~kp~NYkvVYlr----------R~--~~tvvamrKt~~~~~~~~~~~~Rkl~~~~~ 193 (208)
-...|.-+.|++.+-+ ++--..|--|+.+- -+ +...|++||. .+.....+-++-+.+..-.
T Consensus 119 s~~~~~~v~iNG~~~gE~~lNa~~Ag~~gVPV~lVsGDd~~~~ea~~~~P~~~tv~vK~~-~gr~aA~~~~p~~a~~~I~ 197 (270)
T cd08769 119 SGSTIYNIWINGKEMNETLINAAYAGEFGVPVVLVAGDSELEKEVKEETPWAVFVPTKES-LSRYSAKSPSMKKVKEELR 197 (270)
T ss_pred ccCceEEEEECCEEcCHHHHHHHHHhhcCCCEEEEecCHHHHHHHHHhCCCceEEEEeee-cCCCccccCCHHHHHHHHH
Confidence 4443433333321110 11112222222221 01 2336777766 3433344555555566555
Q ss_pred HHHHHHHhh
Q 036071 194 EAKKAALKD 202 (208)
Q Consensus 194 ~akk~AL~~ 202 (208)
++=|+||++
T Consensus 198 ~aa~~Al~~ 206 (270)
T cd08769 198 EAVKEALER 206 (270)
T ss_pred HHHHHHHHh
Confidence 655577774
No 110
>PRK11524 putative methyltransferase; Provisional
Probab=44.60 E-value=18 Score=31.90 Aligned_cols=36 Identities=22% Similarity=0.174 Sum_probs=26.7
Q ss_pred CCCCcceeEEEecC-CC-----------------------ccchhccceeeCCEEEEEec
Q 036071 107 SIADERFDFSFVSS-SL-----------------------DTKFVDHVVKVGGIVVIQLI 142 (208)
Q Consensus 107 ~~~D~sfDFvf~~~-f~-----------------------~~~FIDRtLK~GGI~a~~l~ 142 (208)
.++|++||.+|++- |. ..+.+-|+||+||.+.+..+
T Consensus 22 ~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 22 KIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred hcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 46789999999952 21 12337899999999998755
No 111
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=44.06 E-value=35 Score=28.26 Aligned_cols=16 Identities=19% Similarity=0.476 Sum_probs=14.0
Q ss_pred hccceeeCCEEEEEec
Q 036071 127 VDHVVKVGGIVVIQLI 142 (208)
Q Consensus 127 IDRtLK~GGI~a~~l~ 142 (208)
+-+.||+||++.+..+
T Consensus 203 ~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 203 APRLLKPGGWLLLEIG 218 (251)
T ss_pred HHHhcccCCEEEEEEC
Confidence 5678999999999887
No 112
>PRK06922 hypothetical protein; Provisional
Probab=43.01 E-value=19 Score=37.00 Aligned_cols=42 Identities=29% Similarity=0.237 Sum_probs=28.0
Q ss_pred CcccccC-CCCCcceeEEEecC-CC-----------------cc---chhccceeeCCEEEEEe
Q 036071 100 SDLGQLG-SIADERFDFSFVSS-SL-----------------DT---KFVDHVVKVGGIVVIQL 141 (208)
Q Consensus 100 ~Dl~~q~-~~~D~sfDFvf~~~-f~-----------------~~---~FIDRtLK~GGI~a~~l 141 (208)
+|..+.+ .|++++||+++++. ++ .. +-+-|+||+||.+++.-
T Consensus 474 gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 474 GDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred cchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 3444333 37899999998763 11 11 22678999999998864
No 113
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=42.15 E-value=25 Score=33.60 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=28.0
Q ss_pred CCCCcceeEEEecCCCc-----------cch---hccceeeCCEEEEEec
Q 036071 107 SIADERFDFSFVSSSLD-----------TKF---VDHVVKVGGIVVIQLI 142 (208)
Q Consensus 107 ~~~D~sfDFvf~~~f~~-----------~~F---IDRtLK~GGI~a~~l~ 142 (208)
.+++++||-++.+--+| ..| +-|+||+||.+.+.-.
T Consensus 187 ~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 187 LLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred hCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 58999999999874333 244 7799999999888665
No 114
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=41.93 E-value=24 Score=28.28 Aligned_cols=30 Identities=20% Similarity=0.217 Sum_probs=26.1
Q ss_pred chhhHHHHHHHhccccCCCCCCeEEEeecC
Q 036071 48 NFEFLNLLFQDLGNEGLIKKGDKALLVGSG 77 (208)
Q Consensus 48 ~~~~l~lLf~DL~~EGLLk~g~KAL~vg~~ 77 (208)
..+.++..|++|+++|+++.+.+.+.|-+.
T Consensus 162 tretvsR~l~~l~~~g~I~~~~~~i~I~d~ 191 (202)
T PRK13918 162 VRETVTKVIGELSREGYIRSGYGKIQLLDL 191 (202)
T ss_pred cHHHHHHHHHHHHHCCCEEcCCCEEEEECH
Confidence 778999999999999999999877777643
No 115
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=41.60 E-value=25 Score=30.94 Aligned_cols=29 Identities=31% Similarity=0.568 Sum_probs=25.7
Q ss_pred hhHHHHHHHhccccCCCCCCeEEEeecCC
Q 036071 50 EFLNLLFQDLGNEGLIKKGDKALLVGSGN 78 (208)
Q Consensus 50 ~~l~lLf~DL~~EGLLk~g~KAL~vg~~~ 78 (208)
...+..|+++.++|.+++|++.|+++-|.
T Consensus 299 as~~~~L~~~~~~g~~~~Gd~vll~~~G~ 327 (338)
T PRK09258 299 ASLPITLAMAAEEGFLKPGDRVALLGIGS 327 (338)
T ss_pred hHHHHHHHHHHHhCCCCCCCEEEEEEech
Confidence 45677888999999999999999999888
No 116
>PRK14968 putative methyltransferase; Provisional
Probab=40.78 E-value=31 Score=27.11 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=21.8
Q ss_pred hccceeeCCEEEEEecCCC----CcccCCCCCceEEEEEEe
Q 036071 127 VDHVVKVGGIVVIQLIGDI----SDTYEKPSNYKLEYLRRY 163 (208)
Q Consensus 127 IDRtLK~GGI~a~~l~~~~----s~af~kp~NYkvVYlrR~ 163 (208)
+.+.||+||.+++.++.-. -..+..-..++++.+++.
T Consensus 134 ~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 134 VGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred HHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeec
Confidence 5699999999888776210 011112335677666543
No 117
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=40.42 E-value=30 Score=30.18 Aligned_cols=29 Identities=34% Similarity=0.423 Sum_probs=25.0
Q ss_pred hhHHHHHHHhccccCCCCCCeEEEeecCC
Q 036071 50 EFLNLLFQDLGNEGLIKKGDKALLVGSGN 78 (208)
Q Consensus 50 ~~l~lLf~DL~~EGLLk~g~KAL~vg~~~ 78 (208)
-..+.-|.++.++|.+++|++.++++-|.
T Consensus 285 as~~~~L~~~~~~g~~~~Gd~vll~~~G~ 313 (325)
T PRK12879 285 ATIPLALDLALEQGKIKPGDTLLLYGFGA 313 (325)
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEEEEch
Confidence 34567788888999999999999999887
No 118
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=39.11 E-value=23 Score=28.75 Aligned_cols=54 Identities=13% Similarity=0.069 Sum_probs=32.9
Q ss_pred CcceeEEEecCCC-----ccchhccceeeCCEEEEEec--CCCC--cccCCCCCceEEEEEEe
Q 036071 110 DERFDFSFVSSSL-----DTKFVDHVVKVGGIVVIQLI--GDIS--DTYEKPSNYKLEYLRRY 163 (208)
Q Consensus 110 D~sfDFvf~~~f~-----~~~FIDRtLK~GGI~a~~l~--~~~s--~af~kp~NYkvVYlrR~ 163 (208)
+++||+++..... -.+.+-+.||+||.+++... .+.. -.+.+..+|+.+-++++
T Consensus 95 ~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 157 (187)
T PRK08287 95 PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDCVQL 157 (187)
T ss_pred CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceEEEE
Confidence 3589999987642 12346789999999988753 1110 12233456666655555
No 119
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=38.42 E-value=22 Score=31.42 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=24.8
Q ss_pred CCCcceeEEEecCCCc-----cchhccceeeCCEEEEE
Q 036071 108 IADERFDFSFVSSSLD-----TKFVDHVVKVGGIVVIQ 140 (208)
Q Consensus 108 ~~D~sfDFvf~~~f~~-----~~FIDRtLK~GGI~a~~ 140 (208)
..+++||+++++.... ..-+-|.||+||.+++-
T Consensus 221 ~~~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~s 258 (288)
T TIGR00406 221 PIEGKADVIVANILAEVIKELYPQFSRLVKPGGWLILS 258 (288)
T ss_pred ccCCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 4467999999976542 23368999999998873
No 120
>KOG0934 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.36 E-value=22 Score=30.14 Aligned_cols=30 Identities=30% Similarity=0.424 Sum_probs=23.2
Q ss_pred cccCCCCCceEEEEEEeceE--EEEEEeecccccc
Q 036071 147 DTYEKPSNYKLEYLRRYNST--ILAMRRTALANEL 179 (208)
Q Consensus 147 ~af~kp~NYkvVYlrR~~~t--vvamrKt~~~~~~ 179 (208)
-.|-.-.++|+|| |||++. +++|. ..+|++
T Consensus 47 csfie~kd~kvVy-rryasl~f~~~v~--~~dNEL 78 (145)
T KOG0934|consen 47 CSFIEYKDEKVVY-RRYASLFFCVGVE--DNDNEL 78 (145)
T ss_pred ccchhccCceehh-hhhhhEEEEEEEe--cCCchh
Confidence 5688899999999 999999 45555 446764
No 121
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=37.99 E-value=32 Score=29.71 Aligned_cols=29 Identities=38% Similarity=0.566 Sum_probs=25.3
Q ss_pred hhHHHHHHHhccccCCCCCCeEEEeecCC
Q 036071 50 EFLNLLFQDLGNEGLIKKGDKALLVGSGN 78 (208)
Q Consensus 50 ~~l~lLf~DL~~EGLLk~g~KAL~vg~~~ 78 (208)
...+.-|.++.++|-+++|+++|++|.|.
T Consensus 283 as~~~~L~~~~~~~~~~~G~~vll~~~G~ 311 (320)
T cd00830 283 ASIPLALDEAIEEGKLKKGDLVLLLGFGA 311 (320)
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEEEEch
Confidence 45667788888999999999999999887
No 122
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=36.84 E-value=26 Score=24.17 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=24.0
Q ss_pred chhhHHHHHHHhccccCCCCCCeEEEeec
Q 036071 48 NFEFLNLLFQDLGNEGLIKKGDKALLVGS 76 (208)
Q Consensus 48 ~~~~l~lLf~DL~~EGLLk~g~KAL~vg~ 76 (208)
.-+.++..++.|+++|++....+-+.|-+
T Consensus 41 sr~tv~r~l~~l~~~g~I~~~~~~i~I~d 69 (76)
T PF13545_consen 41 SRETVSRILKRLKDEGIIEVKRGKIIILD 69 (76)
T ss_dssp CHHHHHHHHHHHHHTTSEEEETTEEEESS
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCEEEECC
Confidence 67889999999999999987766666643
No 123
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=36.69 E-value=31 Score=27.33 Aligned_cols=29 Identities=24% Similarity=0.229 Sum_probs=25.2
Q ss_pred chhhHHHHHHHhccccCCCCCCeEEEeec
Q 036071 48 NFEFLNLLFQDLGNEGLIKKGDKALLVGS 76 (208)
Q Consensus 48 ~~~~l~lLf~DL~~EGLLk~g~KAL~vg~ 76 (208)
.-+.++..|+.|++||+++.+.+-+.|-+
T Consensus 156 tretvsR~l~~l~~~g~I~~~~~~i~I~d 184 (193)
T TIGR03697 156 TRVTITRLLGDLRKKKLISIHKKKITVHD 184 (193)
T ss_pred cHHHHHHHHHHHHHCCCEEecCCEEEEeC
Confidence 77899999999999999998877777654
No 124
>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional
Probab=36.59 E-value=34 Score=30.28 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=25.1
Q ss_pred hhHHHHHHHhccccCCCCCCeEEEeecCC
Q 036071 50 EFLNLLFQDLGNEGLIKKGDKALLVGSGN 78 (208)
Q Consensus 50 ~~l~lLf~DL~~EGLLk~g~KAL~vg~~~ 78 (208)
-..+.-|+++.++|.+++|++.|++|-|.
T Consensus 286 asi~~~L~~~~~~g~~~~Gd~vll~~~G~ 314 (326)
T CHL00203 286 ASIPLALDEAIQNNKIQPGQIIVLSGFGA 314 (326)
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEEEEch
Confidence 45667788888899999999999999877
No 125
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=35.02 E-value=22 Score=33.53 Aligned_cols=44 Identities=23% Similarity=0.335 Sum_probs=33.0
Q ss_pred ecCcccccCCCCCcceeEEEecCCC--------ccchhccceeeCCEEEEEec
Q 036071 98 VKSDLGQLGSIADERFDFSFVSSSL--------DTKFVDHVVKVGGIVVIQLI 142 (208)
Q Consensus 98 ~~~Dl~~q~~~~D~sfDFvf~~~f~--------~~~FIDRtLK~GGI~a~~l~ 142 (208)
-..|+-+++ |.|.+||++-+..=- .-+.|=|++|+||..+.---
T Consensus 165 ~~~~~~~~~-fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 165 VVADFGKMP-FEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred ehhhhhcCC-CCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHH
Confidence 456677666 999999999876522 24448899999999887654
No 126
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=34.90 E-value=29 Score=31.53 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=25.0
Q ss_pred cCcccccCCCCC---cceeEEEecCCCc--------cchhccceeeCCEE
Q 036071 99 KSDLGQLGSIAD---ERFDFSFVSSSLD--------TKFVDHVVKVGGIV 137 (208)
Q Consensus 99 ~~Dl~~q~~~~D---~sfDFvf~~~f~~--------~~FIDRtLK~GGI~ 137 (208)
.+||..-- -++ ++||.|.|.=|-+ .+=|.++||+||+-
T Consensus 150 aGDF~e~y-~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~W 198 (270)
T PF07942_consen 150 AGDFLEVY-GPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYW 198 (270)
T ss_pred cCccEEec-CCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEE
Confidence 45555433 223 6999999994433 22388999999943
No 127
>PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=34.83 E-value=44 Score=30.65 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=26.0
Q ss_pred hhhHHHHHHHhccccCCCCCCeEEEeecCC
Q 036071 49 FEFLNLLFQDLGNEGLIKKGDKALLVGSGN 78 (208)
Q Consensus 49 ~~~l~lLf~DL~~EGLLk~g~KAL~vg~~~ 78 (208)
-...|.-|+++.++|-+++|+++++++.+.
T Consensus 336 sAsipi~L~~a~~~g~~~~Gd~vl~~~~~s 365 (378)
T PRK06816 336 SASIYIMLDELLNSGRLKPGQKILCFVPES 365 (378)
T ss_pred chHHHHHHHHHHHcCCCCCCCEEEEEEecc
Confidence 356788899999999999999999998666
No 128
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=34.30 E-value=37 Score=31.90 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=24.8
Q ss_pred CcceeEEEecC--CC---ccc---hhccceeeCCEEEEE
Q 036071 110 DERFDFSFVSS--SL---DTK---FVDHVVKVGGIVVIQ 140 (208)
Q Consensus 110 D~sfDFvf~~~--f~---~~~---FIDRtLK~GGI~a~~ 140 (208)
.++||.+|+-| |+ |.. -+-..||+||.+++.
T Consensus 180 ~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 180 LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEE
Confidence 67999999999 66 333 366789999999965
No 129
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=34.19 E-value=13 Score=27.00 Aligned_cols=28 Identities=21% Similarity=0.485 Sum_probs=19.1
Q ss_pred CCCcceeEEEec-C-CC--c----cch---hccceeeCC
Q 036071 108 IADERFDFSFVS-S-SL--D----TKF---VDHVVKVGG 135 (208)
Q Consensus 108 ~~D~sfDFvf~~-~-f~--~----~~F---IDRtLK~GG 135 (208)
+.+++||.+++. . ++ + .++ +=+.||+||
T Consensus 63 ~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 63 FSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp HHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 678899999993 3 33 2 333 557788887
No 130
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=34.02 E-value=28 Score=31.42 Aligned_cols=18 Identities=11% Similarity=0.311 Sum_probs=15.0
Q ss_pred hccceeeCCEEEEEecCC
Q 036071 127 VDHVVKVGGIVVIQLIGD 144 (208)
Q Consensus 127 IDRtLK~GGI~a~~l~~~ 144 (208)
+-+.||+||.+++-++.+
T Consensus 249 a~~~L~pgG~l~~E~g~~ 266 (307)
T PRK11805 249 APDYLTEDGVLVVEVGNS 266 (307)
T ss_pred HHHhcCCCCEEEEEECcC
Confidence 447899999999998854
No 131
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=33.90 E-value=43 Score=26.98 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=24.1
Q ss_pred chhhHHHHHHHhccccCCCCCCeEEEee
Q 036071 48 NFEFLNLLFQDLGNEGLIKKGDKALLVG 75 (208)
Q Consensus 48 ~~~~l~lLf~DL~~EGLLk~g~KAL~vg 75 (208)
..+.++.++++|++||+++.+.+=+.|-
T Consensus 181 tr~tvsR~l~~l~~~gii~~~~~~i~i~ 208 (211)
T PRK11753 181 SREMVGRVLKMLEDQGLISAHGKTIVVY 208 (211)
T ss_pred CHHHHHHHHHHHHHCCCEEecCCEEEEe
Confidence 7789999999999999999887666654
No 132
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=33.62 E-value=23 Score=26.64 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=25.1
Q ss_pred ceeEEEecCCC--ccchhccceeeCCEEEEEecCCCCcccCCC
Q 036071 112 RFDFSFVSSSL--DTKFVDHVVKVGGIVVIQLIGDISDTYEKP 152 (208)
Q Consensus 112 sfDFvf~~~f~--~~~FIDRtLK~GGI~a~~l~~~~s~af~kp 152 (208)
.+|++|...-+ -.+-|-+--|.-||.+--.++..-+.|.-|
T Consensus 60 ~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~D~p~~~dF~~P 102 (103)
T PF13241_consen 60 GADLVFAATDDPELNEAIYADARARGILVNVVDDPELCDFIFP 102 (103)
T ss_dssp TESEEEE-SS-HHHHHHHHHHHHHTTSEEEETT-CCCCSEE--
T ss_pred hheEEEecCCCHHHHHHHHHHHhhCCEEEEECCCcCCCeEEcC
Confidence 47899988876 244566666778888877774334677655
No 133
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=33.04 E-value=43 Score=29.41 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=24.3
Q ss_pred hhHHHHHHHhccccCCCCCCeEEEeecCC
Q 036071 50 EFLNLLFQDLGNEGLIKKGDKALLVGSGN 78 (208)
Q Consensus 50 ~~l~lLf~DL~~EGLLk~g~KAL~vg~~~ 78 (208)
...+.-|+++.++|-+++|++.|++|.|.
T Consensus 287 as~~~~L~~~~~~~~~~~Gd~vll~~~G~ 315 (326)
T PRK05963 287 ATIPLSLSLANLEQPLREGERLLFAAAGA 315 (326)
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEEEEeh
Confidence 34556668888899999999999999887
No 134
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=32.95 E-value=13 Score=32.61 Aligned_cols=42 Identities=24% Similarity=0.261 Sum_probs=28.6
Q ss_pred eEEEeecCCCCcccc--cccccccC----ceeeeecCcccccCCCCCc
Q 036071 70 KALLVGSGNIGPVIA--SSKFFNDN----EIHLVVKSDLGQLGSIADE 111 (208)
Q Consensus 70 KAL~vg~~~~g~~v~--~~~~l~~d----~id~V~~~Dl~~q~~~~D~ 111 (208)
|.+++|+|..|.++- +...+..+ ++|.|..++|.+|-+|..+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~ 48 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPK 48 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChh
Confidence 568888776676654 33333333 6888999999998766543
No 135
>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.
Probab=32.89 E-value=48 Score=29.78 Aligned_cols=30 Identities=27% Similarity=0.544 Sum_probs=25.7
Q ss_pred hhHHHHHHHhccccCCCCCCeEEEeecCCCC
Q 036071 50 EFLNLLFQDLGNEGLIKKGDKALLVGSGNIG 80 (208)
Q Consensus 50 ~~l~lLf~DL~~EGLLk~g~KAL~vg~~~~g 80 (208)
...+.-|+++.++|.+++|+|.+++|-|. |
T Consensus 324 asi~~~L~~~~~~g~~~~Gd~vll~~~G~-G 353 (361)
T cd00831 324 SSVLYVLAYMEAKGRVKRGDRGLLIAFGP-G 353 (361)
T ss_pred ccHHHHHHHHHHhCCCCCCCEEEEEEEcC-C
Confidence 34667788888999999999999999887 5
No 136
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=31.98 E-value=47 Score=29.21 Aligned_cols=29 Identities=17% Similarity=0.368 Sum_probs=25.4
Q ss_pred hhHHHHHHHhccccCCCCCCeEEEeecCC
Q 036071 50 EFLNLLFQDLGNEGLIKKGDKALLVGSGN 78 (208)
Q Consensus 50 ~~l~lLf~DL~~EGLLk~g~KAL~vg~~~ 78 (208)
...+.-|.++.++|-+++|++.+++|-|.
T Consensus 290 as~~~~L~~~~~~g~~~~Gd~vll~~~G~ 318 (329)
T PRK07204 290 ASIPVALFEAIKQKKVQRGNKILLLGTSA 318 (329)
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEEEEch
Confidence 45677888888899999999999999888
No 137
>cd00281 DAP_dppA Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacterized
Probab=31.51 E-value=78 Score=28.90 Aligned_cols=65 Identities=17% Similarity=0.232 Sum_probs=43.1
Q ss_pred ccCCCCCCeEEEeecCCCCcccccccccccC---ceeeeecCcccccCCCC--CcceeEEEecCCCc-c---ch-hccce
Q 036071 62 EGLIKKGDKALLVGSGNIGPVIASSKFFNDN---EIHLVVKSDLGQLGSIA--DERFDFSFVSSSLD-T---KF-VDHVV 131 (208)
Q Consensus 62 EGLLk~g~KAL~vg~~~~g~~v~~~~~l~~d---~id~V~~~Dl~~q~~~~--D~sfDFvf~~~f~~-~---~F-IDRtL 131 (208)
||++..|..-++|.+.-++ .+.++-++ ...+|+-. -+...|+. |++||-+|.-||+. + .- +++|.
T Consensus 44 ega~~aGa~eVvVnDsHg~----~~Nll~e~L~~~a~LI~G~-prp~~Mm~Gld~~~D~v~fiGYHa~ag~~~gvL~HT~ 118 (265)
T cd00281 44 EGSLAAGATQVLVKDSHDS----GRNLIPERLPEPVQLISGS-GHPYCMVQGLDRSFDALLFIGYHARAGTAANVMAHSY 118 (265)
T ss_pred HHHHHcCCcEEEEEcCCCC----ccccChhHCCcCEEEEecC-CCcchhhhccccCccEEEEEecCCcccCCCCcccccc
Confidence 8999999999999986622 23344332 47888521 13334443 78999999999993 3 22 36664
No 138
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=30.06 E-value=17 Score=31.74 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=28.7
Q ss_pred CCCeEEEeecCCCCcccc--cccccccC----ceeeeecCcccccCCC
Q 036071 67 KGDKALLVGSGNIGPVIA--SSKFFNDN----EIHLVVKSDLGQLGSI 108 (208)
Q Consensus 67 ~g~KAL~vg~~~~g~~v~--~~~~l~~d----~id~V~~~Dl~~q~~~ 108 (208)
...|.+++|.|..|.++- +.+.+..+ +-|.|..+++.+|..+
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~ 78 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLH 78 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcC
Confidence 348999999876566554 44444444 5678888888887644
No 139
>PF04951 Peptidase_M55: D-aminopeptidase; InterPro: IPR007035 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M55 (DppA aminopeptidase family, clan MN). The type example is Bacillus subtilis DppA, which is a binuclear zinc-dependent, D-specific aminopeptidase. The structure reveals that DppA is a new example of a self-compartmentalising protease, a family of proteolytic complexes. Proteasomes are the most extensively studied representatives of this family. The DppA enzyme is composed of identical 30 kDa subunits organised in a decamer with 52 point-group symmetry. A 20 A wide channel runs through the complex, giving access to a central chamber holding the active sites. The structure shows DppA to be a prototype of a new family of metalloaminopeptidases characterised by the SXDXEG key sequence []. The only known substrates are D-ala-D-ala and D-ala-gly-gly.; PDB: 1HI9_A.
Probab=29.91 E-value=55 Score=29.81 Aligned_cols=128 Identities=21% Similarity=0.308 Sum_probs=65.5
Q ss_pred ccCCCCCCeEEEeecCCCCcccccccccccC---ceeeeec--CcccccCCCCCcceeEEEecCCCc-----cchhccc-
Q 036071 62 EGLIKKGDKALLVGSGNIGPVIASSKFFNDN---EIHLVVK--SDLGQLGSIADERFDFSFVSSSLD-----TKFVDHV- 130 (208)
Q Consensus 62 EGLLk~g~KAL~vg~~~~g~~v~~~~~l~~d---~id~V~~--~Dl~~q~~~~D~sfDFvf~~~f~~-----~~FIDRt- 130 (208)
||.+..|..-++|.+.-+. ...++-++ ...+|+- .-+-+..-+ |++||-+|.-||+. -.-+++|
T Consensus 44 ega~~aGa~eVvV~DsHg~----~~Nl~~~~L~~~~~LI~G~~rp~~Mm~Gl-d~~~Dav~fiGYHa~aGt~~gvL~HT~ 118 (265)
T PF04951_consen 44 EGAFEAGATEVVVNDSHGS----MRNLLPEELPPRARLIRGSPRPLSMMEGL-DESFDAVFFIGYHARAGTPRGVLAHTY 118 (265)
T ss_dssp HHHHHTT-SEEEEEE-STT----S--S-TTTS-TTSEEEEES--TTGGGTT---TT-SEEEEEEE---TTS-SSTT--SS
T ss_pred HHHHhcCCeEEEEEecCCC----CCCcChHHCCcCeEEEeCCCCcchhhhcc-ccCcCEEEEEecCcccCCCCcccccee
Confidence 9999999999999876622 12333333 4778883 333433323 89999999999992 2334444
Q ss_pred -------eeeCCEEE-----------------EEecCCC---CcccCCCCCceEEEEEEeceEEEEEEeecccccccccc
Q 036071 131 -------VKVGGIVV-----------------IQLIGDI---SDTYEKPSNYKLEYLRRYNSTILAMRRTALANELIDSS 183 (208)
Q Consensus 131 -------LK~GGI~a-----------------~~l~~~~---s~af~kp~NYkvVYlrR~~~tvvamrKt~~~~~~~~~~ 183 (208)
+|.||.-+ +.+++|- ..+=...++ ...+++||. .+.....+-
T Consensus 119 ~~~~i~~v~iNG~~~gE~~lna~~Ag~~GVPV~lVsGD~~l~~ea~~~~P~----------~~tv~vK~~-~gr~aA~~~ 187 (265)
T PF04951_consen 119 SGSVIHEVRINGREVGEFGLNAALAGYYGVPVVLVSGDDALCEEAKELLPW----------IVTVAVKEG-IGRYAAISL 187 (265)
T ss_dssp STTE-EEEEETTEEE-HHHHHHHHHHHTT--EEEEEEEHHHHHHHHTTSTT-----------EEEEEEEE-EETTEEEE-
T ss_pred ccccceeEEECCEEcchhHHHHHHHhhcCCcEEEEeCcHHHHHHHHHhCCC----------ceEEEEecc-cCCCccccC
Confidence 56666543 3344321 001001112 235666665 344345555
Q ss_pred hhhccccccHHHHHHHHhhhhh
Q 036071 184 AKRQLCQWTLEAKKAALKDLED 205 (208)
Q Consensus 184 ~~Rkl~~~~~~akk~AL~~LEd 205 (208)
++-+.|..-.++=+.||+++..
T Consensus 188 ~p~~a~~~i~~~a~~Al~~~~~ 209 (265)
T PF04951_consen 188 HPAEACERIREAAKEALERLRE 209 (265)
T ss_dssp -HHHHHHHHHHHHHHHHHSGGG
T ss_pred CHHHHHHHHHHHHHHHHHhccc
Confidence 6666666666666688887754
No 140
>TIGR03334 IOR_beta indolepyruvate ferredoxin oxidoreductase, beta subunit. This model represents the beta subunit of indolepyruvate ferredoxin oxidoreductase, an alpha(2)/beta(2) tetramer, as found in Pyrococcus furiosus and Methanobacterium thermoautotrophicum. Cofactors for the tetramer include TPP, 4Fe4S, and 3Fe-4S. It shows considerable sequence similarity to subunits of several other ketoacid oxidoreductases.
Probab=29.09 E-value=42 Score=27.92 Aligned_cols=45 Identities=16% Similarity=0.239 Sum_probs=32.8
Q ss_pred eeeeecCcccccCCCCCcceeEEEecCCC-ccchhccceeeCCEEEEE
Q 036071 94 IHLVVKSDLGQLGSIADERFDFSFVSSSL-DTKFVDHVVKVGGIVVIQ 140 (208)
Q Consensus 94 id~V~~~Dl~~q~~~~D~sfDFvf~~~f~-~~~FIDRtLK~GGI~a~~ 140 (208)
.-.|+-+| -+.|.++.++.|+++..+-. -.++++. ||+||++++-
T Consensus 47 ~s~vris~-i~sp~~~~~~~Dilvald~~~~~~~~~~-l~~~g~ii~n 92 (189)
T TIGR03334 47 INHIRIGE-VYGSMIPEGGADLLLAFEPLEALRYLPY-LSEGGEVILN 92 (189)
T ss_pred EEEEEEcc-ccCCccCCCCCCEEEEeCHHHHHHHHHh-cCCCcEEEEe
Confidence 34455566 44667788999999998866 4556664 7999998855
No 141
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=28.70 E-value=64 Score=30.25 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=14.3
Q ss_pred CCCCCeEEEeecCCCCcc
Q 036071 65 IKKGDKALLVGSGNIGPV 82 (208)
Q Consensus 65 Lk~g~KAL~vg~~~~g~~ 82 (208)
+++|++.|=+|+|.|+.-
T Consensus 242 ~~~g~~VLDlgaG~G~~t 259 (427)
T PRK10901 242 PQNGERVLDACAAPGGKT 259 (427)
T ss_pred CCCCCEEEEeCCCCChHH
Confidence 468999999999996433
No 142
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=28.22 E-value=20 Score=32.79 Aligned_cols=39 Identities=21% Similarity=0.228 Sum_probs=22.2
Q ss_pred eEEEeecCCCCcccc--cccccccC----ceeeeecCcccccCCC
Q 036071 70 KALLVGSGNIGPVIA--SSKFFNDN----EIHLVVKSDLGQLGSI 108 (208)
Q Consensus 70 KAL~vg~~~~g~~v~--~~~~l~~d----~id~V~~~Dl~~q~~~ 108 (208)
|.|+||+|..|.++- +...+..+ ++|.|..++|.+|-+|
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf 45 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLF 45 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCccc
Confidence 456777665555543 33333333 5677777777776443
No 143
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=27.17 E-value=13 Score=28.83 Aligned_cols=46 Identities=20% Similarity=0.326 Sum_probs=28.8
Q ss_pred CCeEEEeecCCCCcccc--cccccccC----ceeeeecCcccccCCCCCcce
Q 036071 68 GDKALLVGSGNIGPVIA--SSKFFNDN----EIHLVVKSDLGQLGSIADERF 113 (208)
Q Consensus 68 g~KAL~vg~~~~g~~v~--~~~~l~~d----~id~V~~~Dl~~q~~~~D~sf 113 (208)
..|.+++|.|..|.++- +.+.+..+ +-|.|.+.|+.+|..+..+.+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~v 53 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDV 53 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGT
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccc
Confidence 46889999876566554 44444433 567888999999886665443
No 144
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=27.10 E-value=46 Score=30.26 Aligned_cols=16 Identities=38% Similarity=0.441 Sum_probs=14.2
Q ss_pred CCCCCCeEEEeecCCC
Q 036071 64 LIKKGDKALLVGSGNI 79 (208)
Q Consensus 64 LLk~g~KAL~vg~~~~ 79 (208)
.|++|.++|=+|+|.|
T Consensus 79 ~L~pG~s~LdvGsGSG 94 (237)
T KOG1661|consen 79 HLQPGASFLDVGSGSG 94 (237)
T ss_pred hhccCcceeecCCCcc
Confidence 5889999999999984
No 145
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=26.91 E-value=27 Score=35.80 Aligned_cols=44 Identities=23% Similarity=0.118 Sum_probs=34.4
Q ss_pred CCeEEEeecCCCCcccc--cccccccC----ceeeeecCcccccCCCCCc
Q 036071 68 GDKALLVGSGNIGPVIA--SSKFFNDN----EIHLVVKSDLGQLGSIADE 111 (208)
Q Consensus 68 g~KAL~vg~~~~g~~v~--~~~~l~~d----~id~V~~~Dl~~q~~~~D~ 111 (208)
..|.|+||+|..|..+- +.+.+..+ +.|.|..+++.||.++..+
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~ 387 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFE 387 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchh
Confidence 58999999988776654 66666666 6789999999999966433
No 146
>PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III
Probab=26.46 E-value=64 Score=29.57 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=26.3
Q ss_pred chhhHHHHHHHhccccCCCCCCeEEEeecCC
Q 036071 48 NFEFLNLLFQDLGNEGLIKKGDKALLVGSGN 78 (208)
Q Consensus 48 ~~~~l~lLf~DL~~EGLLk~g~KAL~vg~~~ 78 (208)
.-...+.-|.++.++|-+++|++.|++|-|.
T Consensus 338 ~sAsi~~~L~~~~~~g~~~~Gd~vll~~~G~ 368 (379)
T PLN02326 338 SAASIPLALDEAVRSGKVKKGDVIATAGFGA 368 (379)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCEEEEEEECh
Confidence 3346677888888999999999999999887
No 147
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=26.39 E-value=52 Score=27.19 Aligned_cols=29 Identities=14% Similarity=0.289 Sum_probs=25.6
Q ss_pred chhhHHHHHHHhccccCCCCCCeEEEeec
Q 036071 48 NFEFLNLLFQDLGNEGLIKKGDKALLVGS 76 (208)
Q Consensus 48 ~~~~l~lLf~DL~~EGLLk~g~KAL~vg~ 76 (208)
.-+.++.+++.|++||+++.+.+-+.|-+
T Consensus 197 sr~tvsR~l~~l~~~g~I~~~~~~i~i~d 225 (235)
T PRK11161 197 TVETISRLLGRFQKSGMLAVKGKYITIEN 225 (235)
T ss_pred cHHHHHHHHHHHHHCCCEEecCCEEEEcC
Confidence 77899999999999999999988777754
No 148
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=26.20 E-value=1.1e+02 Score=28.85 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=12.5
Q ss_pred CCCCeEEEeecCCCC
Q 036071 66 KKGDKALLVGSGNIG 80 (208)
Q Consensus 66 k~g~KAL~vg~~~~g 80 (208)
.+|++.|=+|+|.|+
T Consensus 249 ~~g~~VLDlgaG~G~ 263 (445)
T PRK14904 249 QPGSTVLDLCAAPGG 263 (445)
T ss_pred CCCCEEEEECCCCCH
Confidence 578999999998854
No 149
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=26.17 E-value=73 Score=29.02 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=23.1
Q ss_pred CcceeEEEecC----CC---c---cchhccceeeCCEEEEEec
Q 036071 110 DERFDFSFVSS----SL---D---TKFVDHVVKVGGIVVIQLI 142 (208)
Q Consensus 110 D~sfDFvf~~~----f~---~---~~FIDRtLK~GGI~a~~l~ 142 (208)
.+.||++|.-+ |+ . .+-+-+.||+||++.+=-+
T Consensus 221 ~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 221 PGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred CCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 57899999854 32 1 2227788999998766554
No 150
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=26.01 E-value=55 Score=27.31 Aligned_cols=29 Identities=17% Similarity=0.455 Sum_probs=25.5
Q ss_pred chhhHHHHHHHhccccCCCCCCeEEEeec
Q 036071 48 NFEFLNLLFQDLGNEGLIKKGDKALLVGS 76 (208)
Q Consensus 48 ~~~~l~lLf~DL~~EGLLk~g~KAL~vg~ 76 (208)
.-+.++..|++|+++|++..+.+-+.|-+
T Consensus 182 sretvsR~L~~L~~~G~I~~~~~~i~I~d 210 (226)
T PRK10402 182 SYRHLLYVLAQFIQDGYLKKSKRGYLIKN 210 (226)
T ss_pred cHHHHHHHHHHHHHCCCEEeeCCEEEEeC
Confidence 77999999999999999998877777754
No 151
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=25.29 E-value=24 Score=30.05 Aligned_cols=43 Identities=21% Similarity=0.223 Sum_probs=29.0
Q ss_pred CCeEEEeecCCCCcccc--cccccccC----ceeeeecCcccccCCCCC
Q 036071 68 GDKALLVGSGNIGPVIA--SSKFFNDN----EIHLVVKSDLGQLGSIAD 110 (208)
Q Consensus 68 g~KAL~vg~~~~g~~v~--~~~~l~~d----~id~V~~~Dl~~q~~~~D 110 (208)
..|.+++|.|..|.++- +.+.+..+ +-|.|..+++.+|..+.+
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~ 69 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTE 69 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccCh
Confidence 47999999776566654 44444444 467788888888765543
No 152
>PRK06840 hypothetical protein; Validated
Probab=25.21 E-value=72 Score=28.25 Aligned_cols=28 Identities=29% Similarity=0.326 Sum_probs=24.1
Q ss_pred hHHHHHHHhccccCCCCCCeEEEeecCC
Q 036071 51 FLNLLFQDLGNEGLIKKGDKALLVGSGN 78 (208)
Q Consensus 51 ~l~lLf~DL~~EGLLk~g~KAL~vg~~~ 78 (208)
..+.-|+++.++|-+++|++.+++|.|.
T Consensus 297 s~~~~L~~~~~~~~~~~Gd~ill~~~G~ 324 (339)
T PRK06840 297 DQILSLHLALEQGKLKDGDLVVLVSAGT 324 (339)
T ss_pred hHHHHHHHHHHcCCCCCCCEEEEEEEeh
Confidence 4456778888999999999999999877
No 153
>smart00690 DM5 Domain of unknown function, currently peculiar to Drosophila.
Probab=25.11 E-value=44 Score=26.62 Aligned_cols=11 Identities=18% Similarity=0.718 Sum_probs=9.3
Q ss_pred CCCceEEEEEE
Q 036071 152 PSNYKLEYLRR 162 (208)
Q Consensus 152 p~NYkvVYlrR 162 (208)
..||||||+|=
T Consensus 32 ~k~yrVvFIKa 42 (102)
T smart00690 32 KKNYRVVFIKA 42 (102)
T ss_pred CCCeEEEEEEC
Confidence 47999999983
No 154
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=24.81 E-value=74 Score=31.60 Aligned_cols=39 Identities=33% Similarity=0.482 Sum_probs=29.0
Q ss_pred cCcccccCCCCCcceeEEEecCCCc------------------cchhccceeeCCEEE
Q 036071 99 KSDLGQLGSIADERFDFSFVSSSLD------------------TKFVDHVVKVGGIVV 138 (208)
Q Consensus 99 ~~Dl~~q~~~~D~sfDFvf~~~f~~------------------~~FIDRtLK~GGI~a 138 (208)
..|+.+.. |+|||||.++.=|..+ ..-|=|+|++||+..
T Consensus 102 ~~d~~~l~-fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~ 158 (482)
T KOG2352|consen 102 EMDMDQLV-FEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYI 158 (482)
T ss_pred Eecchhcc-CCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEE
Confidence 45555555 9999999999887542 222789999999943
No 155
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=24.80 E-value=23 Score=32.55 Aligned_cols=43 Identities=21% Similarity=0.232 Sum_probs=30.1
Q ss_pred CCeEEEeecCCCCcccc--cccccccC----ceeeeecCcccccCCCCC
Q 036071 68 GDKALLVGSGNIGPVIA--SSKFFNDN----EIHLVVKSDLGQLGSIAD 110 (208)
Q Consensus 68 g~KAL~vg~~~~g~~v~--~~~~l~~d----~id~V~~~Dl~~q~~~~D 110 (208)
+.|.++||.|..|..+- +.+.+..+ +-|.|..++|.+|.++..
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~ 72 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTE 72 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccH
Confidence 47899999876565544 45555444 577888999999876644
No 156
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=24.66 E-value=34 Score=31.07 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=23.5
Q ss_pred cceeEEEecC-----CCccch---hccceeeCCEEEEE
Q 036071 111 ERFDFSFVSS-----SLDTKF---VDHVVKVGGIVVIQ 140 (208)
Q Consensus 111 ~sfDFvf~~~-----f~~~~F---IDRtLK~GGI~a~~ 140 (208)
++||+|...- -++..| ..+.+||||++.+-
T Consensus 123 ~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 123 GQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLS 160 (243)
T ss_pred CCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEe
Confidence 8999998865 235656 78999999998764
No 157
>PF03103 DUF243: Domain of unknown function (DUF243); InterPro: IPR004145 This domain is only found in fly proteins. It is found associated with YLP motifs (IPR004019 from INTERPRO) in some proteins.
Probab=24.46 E-value=47 Score=26.24 Aligned_cols=12 Identities=8% Similarity=0.512 Sum_probs=9.9
Q ss_pred CCCceEEEEEEe
Q 036071 152 PSNYKLEYLRRY 163 (208)
Q Consensus 152 p~NYkvVYlrR~ 163 (208)
..||||||+|==
T Consensus 30 ~K~yrVvFIKaP 41 (97)
T PF03103_consen 30 QKHYRVVFIKAP 41 (97)
T ss_pred CCCcEEEEEECC
Confidence 579999999843
No 158
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=24.37 E-value=3e+02 Score=23.90 Aligned_cols=59 Identities=24% Similarity=0.439 Sum_probs=42.4
Q ss_pred ceeEEEecC-CC------ccchhc----cceeeCCEEEEEecCCCCcccCCCCCceEEEEEEeceEEEEEE
Q 036071 112 RFDFSFVSS-SL------DTKFVD----HVVKVGGIVVIQLIGDISDTYEKPSNYKLEYLRRYNSTILAMR 171 (208)
Q Consensus 112 sfDFvf~~~-f~------~~~FID----RtLK~GGI~a~~l~~~~s~af~kp~NYkvVYlrR~~~tvvamr 171 (208)
.||+||..- |. ...++- ..|++||++++.-..+. ..-..|.|..++=-|+|..|.+.+-
T Consensus 114 ~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~~-~~~~~~~~~~~~r~k~yG~t~l~~y 183 (187)
T COG0742 114 PFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKDV-ELPELPANFELHREKKYGQTKLTFY 183 (187)
T ss_pred cccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCCc-CccccCCCeEEEEEeecCCEEEEEE
Confidence 599999865 43 122222 56999999999988442 2336799999998999988876654
No 159
>PRK06247 pyruvate kinase; Provisional
Probab=24.21 E-value=1.4e+02 Score=29.37 Aligned_cols=30 Identities=20% Similarity=0.262 Sum_probs=26.1
Q ss_pred chhhHHHHHHHhccccCCCCCCeEEEeecC
Q 036071 48 NFEFLNLLFQDLGNEGLIKKGDKALLVGSG 77 (208)
Q Consensus 48 ~~~~l~lLf~DL~~EGLLk~g~KAL~vg~~ 77 (208)
..+.+....+.++++|++++||+.++++..
T Consensus 425 ~~~~~~~a~~~~~~~g~~~~Gd~vvv~~g~ 454 (476)
T PRK06247 425 TDDMVRRADRIALAEGFYKRGDRVVIVAGV 454 (476)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCEEEEEeCC
Confidence 457888899999999999999999999743
No 160
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=24.17 E-value=45 Score=23.23 Aligned_cols=49 Identities=24% Similarity=0.432 Sum_probs=28.9
Q ss_pred eEEEeecCCCCcc--cc--cccccccCc-eeeeecCcccccCCCCCcceeEEEecCC
Q 036071 70 KALLVGSGNIGPV--IA--SSKFFNDNE-IHLVVKSDLGQLGSIADERFDFSFVSSS 121 (208)
Q Consensus 70 KAL~vg~~~~g~~--v~--~~~~l~~d~-id~V~~~Dl~~q~~~~D~sfDFvf~~~f 121 (208)
|+++||+...|.- .. +.+.+.+.+ ++.++..|+... ....+||+||...
T Consensus 2 kilivC~~G~~~s~~l~~~l~~~~~~~~~v~~~~~~~~~~~---~~~~~DlIitT~~ 55 (85)
T cd05568 2 KALVVCPSGIGTSRLLKSKLKKLFPEIEIIDVISLRELEEV---DLDDYDLIISTVP 55 (85)
T ss_pred eEEEECCCCHHHHHHHHHHHHHHCCCceEEEEEeHHHHhhC---cccCCCEEEEccc
Confidence 6778874332311 11 334444443 577777777754 3467999999884
No 161
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=24.14 E-value=1.2e+02 Score=26.91 Aligned_cols=17 Identities=12% Similarity=0.329 Sum_probs=14.6
Q ss_pred hccceeeCCEEEEEecC
Q 036071 127 VDHVVKVGGIVVIQLIG 143 (208)
Q Consensus 127 IDRtLK~GGI~a~~l~~ 143 (208)
+-+.||+||.+++.+++
T Consensus 237 a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 237 AADHLNENGVLVVEVGN 253 (284)
T ss_pred HHHhcCCCCEEEEEECc
Confidence 45799999999999984
No 162
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=23.45 E-value=44 Score=30.74 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=25.4
Q ss_pred CcceeEEEecC----CCccch---hccceeeCC-EEEEEecC
Q 036071 110 DERFDFSFVSS----SLDTKF---VDHVVKVGG-IVVIQLIG 143 (208)
Q Consensus 110 D~sfDFvf~~~----f~~~~F---IDRtLK~GG-I~a~~l~~ 143 (208)
++|+|.+..-- |+-.+| +-|+||..| +.++-.-+
T Consensus 98 e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 98 EESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred CcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 89999998754 444555 999998877 77776664
No 163
>PRK07143 hypothetical protein; Provisional
Probab=23.32 E-value=30 Score=31.44 Aligned_cols=83 Identities=12% Similarity=0.244 Sum_probs=56.5
Q ss_pred CCCCcceeEEEecCCC-------ccchhccceeeCCEEEEEecCCCCcccCCCCCceEEEEEEeceEEEEEEeecccccc
Q 036071 107 SIADERFDFSFVSSSL-------DTKFVDHVVKVGGIVVIQLIGDISDTYEKPSNYKLEYLRRYNSTILAMRRTALANEL 179 (208)
Q Consensus 107 ~~~D~sfDFvf~~~f~-------~~~FIDRtLK~GGI~a~~l~~~~s~af~kp~NYkvVYlrR~~~tvvamrKt~~~~~~ 179 (208)
.+..-.+|.++...|+ +.+||+.+++ =++-.+.++.| -.|.+-.--.+-+++++-..+..+.+.....+.
T Consensus 73 ~l~~~Gvd~~~~~~F~~~~a~ls~e~Fi~~ll~-l~~~~iVvG~D--f~FG~~r~G~~~~L~~~~~~v~~v~~~~~~g~~ 149 (279)
T PRK07143 73 TLANLGFKNIILLDFNEELQNLSGNDFIEKLTK-NQVSFFVVGKD--FRFGKNASWNADDLKEYFPNVHIVEILKINQQK 149 (279)
T ss_pred HHHHCCCCEEEEeCCCHHHhCCCHHHHHHHHHh-cCCCEEEECCC--cccCCCCCCCHHHHHHhCCcEEEeCCEEcCCcE
Confidence 3455568888888875 5889998876 45566777755 577775555566677764255555655555666
Q ss_pred cccchhhcccccc
Q 036071 180 IDSSAKRQLCQWT 192 (208)
Q Consensus 180 ~~~~~~Rkl~~~~ 192 (208)
+.|+.=|++++-.
T Consensus 150 ISST~IR~~l~~G 162 (279)
T PRK07143 150 ISTSLLKEFIEFG 162 (279)
T ss_pred EcHHHHHHHHHcC
Confidence 7788889888653
No 164
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=23.18 E-value=30 Score=26.89 Aligned_cols=48 Identities=8% Similarity=0.050 Sum_probs=27.7
Q ss_pred eEEEeecCCCCcccc--cccccccCceeeeecCcccccCC--CCCcceeEEEecC
Q 036071 70 KALLVGSGNIGPVIA--SSKFFNDNEIHLVVKSDLGQLGS--IADERFDFSFVSS 120 (208)
Q Consensus 70 KAL~vg~~~~g~~v~--~~~~l~~d~id~V~~~Dl~~q~~--~~D~sfDFvf~~~ 120 (208)
+.-+.++|..+..++ -..++++.|||+-. ...+++ +..+.+|++++-.
T Consensus 28 ~~~v~SAG~~~~~~~p~a~~~l~e~Gid~~~---~~s~~l~~~~~~~~D~iitm~ 79 (126)
T TIGR02689 28 NIAVTSAGLEVSRVHPTAIEVMSEIGIDISG---QTSKPLENFHPEDYDVVISLC 79 (126)
T ss_pred CEEEEcCcCCCCCCCHHHHHHHHHhCCCccc---CccccCChhHhcCCCEEEEeC
Confidence 455566776443443 34677888888632 222221 2245899999864
No 165
>PRK08223 hypothetical protein; Validated
Probab=23.08 E-value=24 Score=32.38 Aligned_cols=41 Identities=7% Similarity=0.227 Sum_probs=28.6
Q ss_pred CCeEEEeecCCCCcccc--cccccccC----ceeeeecCcccccCCC
Q 036071 68 GDKALLVGSGNIGPVIA--SSKFFNDN----EIHLVVKSDLGQLGSI 108 (208)
Q Consensus 68 g~KAL~vg~~~~g~~v~--~~~~l~~d----~id~V~~~Dl~~q~~~ 108 (208)
..|.+++|.|..|.++- +.+.+..+ +-|.|..++|++|-.+
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~ 73 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGA 73 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCc
Confidence 48999999876566554 55555555 5677788888887643
No 166
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=22.73 E-value=3.3e+02 Score=23.25 Aligned_cols=118 Identities=12% Similarity=0.124 Sum_probs=66.8
Q ss_pred chhhHHHHHHHhccccCCCCCCeEEEeecCCCCccc-c-cccc----------------cccC----c---eeeeecCcc
Q 036071 48 NFEFLNLLFQDLGNEGLIKKGDKALLVGSGNIGPVI-A-SSKF----------------FNDN----E---IHLVVKSDL 102 (208)
Q Consensus 48 ~~~~l~lLf~DL~~EGLLk~g~KAL~vg~~~~g~~v-~-~~~~----------------l~~d----~---id~V~~~Dl 102 (208)
...+...+|+.|... .+|.++|=+|+|.| ... + .++. .+.| + +.++ .+|+
T Consensus 37 ~d~v~e~l~~~l~~~---~~~~~vLDl~~GsG-~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~-~~D~ 111 (199)
T PRK10909 37 TDRVRETLFNWLAPV---IVDARCLDCFAGSG-ALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVV-NTNA 111 (199)
T ss_pred CHHHHHHHHHHHhhh---cCCCEEEEcCCCcc-HHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEE-EchH
Confidence 566777778777542 45678888888873 221 1 1110 0111 1 2222 3444
Q ss_pred cccCCCCCcceeEEEecC-CCc---c---chhcc--ceeeCCEEEEEecCCCCccc-CCCCCceEEEEEEeceEEEE-EE
Q 036071 103 GQLGSIADERFDFSFVSS-SLD---T---KFVDH--VVKVGGIVVIQLIGDISDTY-EKPSNYKLEYLRRYNSTILA-MR 171 (208)
Q Consensus 103 ~~q~~~~D~sfDFvf~~~-f~~---~---~FIDR--tLK~GGI~a~~l~~~~s~af-~kp~NYkvVYlrR~~~tvva-mr 171 (208)
.+...-.+++||.+|.+- |.. . +.+.. .|+++||+.+.-... ..| ..|.|+++.=-|+|..+.+. .+
T Consensus 112 ~~~l~~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~--~~~~~~~~~~~~~~~k~yG~s~~~~~~ 189 (199)
T PRK10909 112 LSFLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEVE--NGLPTVPANWQLHREKVAGQVAYRLYI 189 (199)
T ss_pred HHHHhhcCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecCC--CCcccCCCccEEEEEecCCCEEEEEEE
Confidence 331111245799999876 331 1 22222 378999999886522 233 55788998888999877444 55
Q ss_pred e
Q 036071 172 R 172 (208)
Q Consensus 172 K 172 (208)
|
T Consensus 190 ~ 190 (199)
T PRK10909 190 R 190 (199)
T ss_pred E
Confidence 5
No 167
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=22.62 E-value=74 Score=29.35 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=25.2
Q ss_pred CcceeEEEecC-CCc---------cch---hccceeeCCEEEEEec
Q 036071 110 DERFDFSFVSS-SLD---------TKF---VDHVVKVGGIVVIQLI 142 (208)
Q Consensus 110 D~sfDFvf~~~-f~~---------~~F---IDRtLK~GGI~a~~l~ 142 (208)
+++||+++++- |++ .+| +-+.||+||.+.+..+
T Consensus 259 ~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 259 KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 67999999974 431 344 5678999999988776
No 168
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=22.56 E-value=22 Score=31.09 Aligned_cols=41 Identities=22% Similarity=0.228 Sum_probs=27.4
Q ss_pred CCeEEEeecCCCCcccc--cccccccC----ceeeeecCcccccCCC
Q 036071 68 GDKALLVGSGNIGPVIA--SSKFFNDN----EIHLVVKSDLGQLGSI 108 (208)
Q Consensus 68 g~KAL~vg~~~~g~~v~--~~~~l~~d----~id~V~~~Dl~~q~~~ 108 (208)
+.|.+++|.|..|..+- +.+.+..+ +-|.|..++|.+|-.+
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~ 70 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLH 70 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceee
Confidence 37999999776565554 44444444 4667778888887644
No 169
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=22.42 E-value=33 Score=32.03 Aligned_cols=49 Identities=22% Similarity=0.346 Sum_probs=31.1
Q ss_pred hccccCCC-CCCeEEEeecCCCCcccc--cccccccC----ceeeeecCcccccCC
Q 036071 59 LGNEGLIK-KGDKALLVGSGNIGPVIA--SSKFFNDN----EIHLVVKSDLGQLGS 107 (208)
Q Consensus 59 L~~EGLLk-~g~KAL~vg~~~~g~~v~--~~~~l~~d----~id~V~~~Dl~~q~~ 107 (208)
+..||--| +..|.+++|.|..|..+- +.+.+..+ +-|.|..++|++|-.
T Consensus 32 ~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l 87 (392)
T PRK07878 32 VGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVI 87 (392)
T ss_pred cCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccc
Confidence 33343333 357999999877676654 44444444 567778888887654
No 170
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=21.94 E-value=99 Score=28.93 Aligned_cols=64 Identities=20% Similarity=0.238 Sum_probs=43.1
Q ss_pred CceeeeecCcccccCCCCCcceeEEEecCCC-----------ccchhccceeeCCEEEEEecCCCCcccCCCCCce
Q 036071 92 NEIHLVVKSDLGQLGSIADERFDFSFVSSSL-----------DTKFVDHVVKVGGIVVIQLIGDISDTYEKPSNYK 156 (208)
Q Consensus 92 d~id~V~~~Dl~~q~~~~D~sfDFvf~~~f~-----------~~~FIDRtLK~GGI~a~~l~~~~s~af~kp~NYk 156 (208)
.|.|.+...|.-..| +.+++||++++-++. ..+-.-|+||+||=.-+-+..--...=.+.+||+
T Consensus 84 ~~~~~~~~ad~l~~p-~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~q~~~~~~s~~~ 158 (293)
T KOG1331|consen 84 SGGDNVCRADALKLP-FREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALEQHQSSSKSNYK 158 (293)
T ss_pred CCCceeehhhhhcCC-CCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhhccCcccccchh
Confidence 355566677777777 999999999988755 1344789999999876666511001112367777
No 171
>PF01955 CbiZ: Adenosylcobinamide amidohydrolase; InterPro: IPR002808 This prokaryotic protein includes CbiZ, which is involved in the salvage pathway of cobinamide in archaea. Archaea convert adenosylcobinamide (AdoCbi) into adenosylcobinamide phosphate (AdoCbi-P) in two steps. First, the amidohydrolase activity of CbiZ cleaves off the aminopropanol moiety of AdoCbi yielding adenosylcobyric acid (AdoCby); second, AdoCby is converted into AdoCbi-P by the action of adenosylcobinamide-phosphate synthase (CbiB, 6.3.1.10 from EC). Adenosylcobyric acid is an intermediate of the de novo coenzyme B12 biosynthetic route [].
Probab=21.73 E-value=40 Score=28.80 Aligned_cols=21 Identities=43% Similarity=0.283 Sum_probs=16.6
Q ss_pred hhhccccccHHHHHHHHhhhh
Q 036071 184 AKRQLCQWTLEAKKAALKDLE 204 (208)
Q Consensus 184 ~~Rkl~~~~~~akk~AL~~LE 204 (208)
+-=+++..++|||-+||+.|-
T Consensus 123 Alv~a~~taTEAKt~AL~dl~ 143 (191)
T PF01955_consen 123 ALVNALITATEAKTAALQDLG 143 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 334567789999999999874
No 172
>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]
Probab=21.55 E-value=1.1e+02 Score=28.96 Aligned_cols=34 Identities=29% Similarity=0.428 Sum_probs=24.5
Q ss_pred CCceEEEEEEeceE--EEEEEeecccccc--cccchhh
Q 036071 153 SNYKLEYLRRYNST--ILAMRRTALANEL--IDSSAKR 186 (208)
Q Consensus 153 ~NYkvVYlrR~~~t--vvamrKt~~~~~~--~~~~~~R 186 (208)
.-|.+||-=|--.+ +|||||+....+. +++.+-|
T Consensus 22 Gtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiR 59 (323)
T KOG0594|consen 22 GTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIR 59 (323)
T ss_pred CCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhH
Confidence 35899998887666 9999999877642 4444444
No 173
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=21.55 E-value=35 Score=31.44 Aligned_cols=42 Identities=17% Similarity=0.079 Sum_probs=29.8
Q ss_pred CCCeEEEeecCCCCcccc--cccccccC----ceeeeecCcccccCCC
Q 036071 67 KGDKALLVGSGNIGPVIA--SSKFFNDN----EIHLVVKSDLGQLGSI 108 (208)
Q Consensus 67 ~g~KAL~vg~~~~g~~v~--~~~~l~~d----~id~V~~~Dl~~q~~~ 108 (208)
++.|.+++|.|..|..+- +.+.+..+ +-|.|..++|.+|-.+
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~ 74 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIH 74 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCccc
Confidence 348999999877666554 44444444 5678889999998654
No 174
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=21.33 E-value=29 Score=29.19 Aligned_cols=40 Identities=20% Similarity=0.178 Sum_probs=25.1
Q ss_pred CCCeEEEeecCCCCcccc--cccccccC----ceeeeecCcccccC
Q 036071 67 KGDKALLVGSGNIGPVIA--SSKFFNDN----EIHLVVKSDLGQLG 106 (208)
Q Consensus 67 ~g~KAL~vg~~~~g~~v~--~~~~l~~d----~id~V~~~Dl~~q~ 106 (208)
.+.|.+++|.|..|.++- +.+.+..+ +-|.|..++|.+|.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~ 65 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQI 65 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhh
Confidence 347899999776565543 33333333 46677777777764
No 175
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=21.33 E-value=55 Score=26.09 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=16.9
Q ss_pred cchhccceeeCCEEEEEecCC
Q 036071 124 TKFVDHVVKVGGIVVIQLIGD 144 (208)
Q Consensus 124 ~~FIDRtLK~GGI~a~~l~~~ 144 (208)
.+.+-|+||+||.+.+.+++.
T Consensus 39 ~~~~~rvLk~~g~~~i~~~~~ 59 (231)
T PF01555_consen 39 LKECYRVLKPGGSIFIFIDDR 59 (231)
T ss_dssp HHHHHHHEEEEEEEEEEE-CC
T ss_pred HHHHHhhcCCCeeEEEEecch
Confidence 445889999999999999954
No 176
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=21.06 E-value=29 Score=30.97 Aligned_cols=47 Identities=17% Similarity=0.374 Sum_probs=31.5
Q ss_pred cCCCCCCeEEEeecCCCCcccc--ccccc-------cc---C----ceeeeecCcccccCCCCC
Q 036071 63 GLIKKGDKALLVGSGNIGPVIA--SSKFF-------ND---N----EIHLVVKSDLGQLGSIAD 110 (208)
Q Consensus 63 GLLk~g~KAL~vg~~~~g~~v~--~~~~l-------~~---d----~id~V~~~Dl~~q~~~~D 110 (208)
-||.+..|.++||.|..|..+- +.+.. .. + +.|.|.++++.+|. |.+
T Consensus 6 ~~~~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQl-f~~ 68 (244)
T TIGR03736 6 ALLSRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQA-FYP 68 (244)
T ss_pred HHHhCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhccc-CCh
Confidence 3567889999999776665543 44431 11 2 57888899999984 543
No 177
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=20.97 E-value=47 Score=33.11 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=41.2
Q ss_pred EEeecCCCCcccccccccccCc---eeeeecCcccc------------------cCCCCCcceeEEEecCCC-------c
Q 036071 72 LLVGSGNIGPVIASSKFFNDNE---IHLVVKSDLGQ------------------LGSIADERFDFSFVSSSL-------D 123 (208)
Q Consensus 72 L~vg~~~~g~~v~~~~~l~~d~---id~V~~~Dl~~------------------q~~~~D~sfDFvf~~~f~-------~ 123 (208)
+=+.++-|| +.-++.++. |-+||...-.. --+.=+-|||++=+++.+ .
T Consensus 370 MDMnAg~GG----FAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~ 445 (506)
T PF03141_consen 370 MDMNAGYGG----FAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCE 445 (506)
T ss_pred eeecccccH----HHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhccccc
Confidence 345566655 445555553 66777433222 223446799998887744 2
Q ss_pred cch----hccceeeCCEEEEEe
Q 036071 124 TKF----VDHVVKVGGIVVIQL 141 (208)
Q Consensus 124 ~~F----IDRtLK~GGI~a~~l 141 (208)
.++ +||+|+|||.+.+.=
T Consensus 446 ~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 446 MEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred HHHHHHHhHhhcCCCceEEEec
Confidence 333 899999999988753
No 178
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.94 E-value=1.5e+02 Score=28.58 Aligned_cols=130 Identities=18% Similarity=0.231 Sum_probs=65.9
Q ss_pred CCccccccCccCCCCc-chhhHHHHHHHhccccCCCCCCeEEEeecCCCCcccc-cccccccC-----------------
Q 036071 32 ASFLNIDIDDYDLGSK-NFEFLNLLFQDLGNEGLIKKGDKALLVGSGNIGPVIA-SSKFFNDN----------------- 92 (208)
Q Consensus 32 ~s~~~~~~~~~~~~~~-~~~~l~lLf~DL~~EGLLk~g~KAL~vg~~~~g~~v~-~~~~l~~d----------------- 92 (208)
++.|.++.++=|.+.. -+|=|+.=.|-- .+|=+|+|+|+|++|+|..|=..- +.+++-.-
T Consensus 134 ~dfc~KLPd~vs~eeGAl~ePLsV~~HAc-r~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 134 ADFCYKLPDNVSFEEGALIEPLSVGVHAC-RRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred hHheeeCCCCCchhhcccccchhhhhhhh-hhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 3455555444443331 122233333322 478899999999999987542111 11111100
Q ss_pred -c---eeeeecC----cccc--cCCCCCcceeEEEecCCC--ccchhccceeeCCEEEEEec-CCCCcccCC--CCCceE
Q 036071 93 -E---IHLVVKS----DLGQ--LGSIADERFDFSFVSSSL--DTKFVDHVVKVGGIVVIQLI-GDISDTYEK--PSNYKL 157 (208)
Q Consensus 93 -~---id~V~~~----Dl~~--q~~~~D~sfDFvf~~~f~--~~~FIDRtLK~GGI~a~~l~-~~~s~af~k--p~NYkv 157 (208)
| ++.++.. ++.+ +.-+.+.-+||.|..+-. ..+-.=-++|.||. ++++. +.....|.. -.++.+
T Consensus 213 ~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt-~vlvg~g~~~~~fpi~~v~~kE~ 291 (354)
T KOG0024|consen 213 FGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFDCSGAEVTIRAAIKATRSGGT-VVLVGMGAEEIQFPIIDVALKEV 291 (354)
T ss_pred hCCeEEeeccccccHHHHHHHHHhhccccCCCeEEEccCchHHHHHHHHHhccCCE-EEEeccCCCccccChhhhhhhee
Confidence 1 2222221 1111 223555669999998865 34444568999999 66666 333445554 234444
Q ss_pred EEEEEe
Q 036071 158 EYLRRY 163 (208)
Q Consensus 158 VYlrR~ 163 (208)
.+.=-|
T Consensus 292 ~~~g~f 297 (354)
T KOG0024|consen 292 DLRGSF 297 (354)
T ss_pred eeeeee
Confidence 444333
No 179
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=20.47 E-value=2.3e+02 Score=26.79 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=25.4
Q ss_pred CCCcceeEEEecC-CCc---------cch---hccceeeCCEEEEEec
Q 036071 108 IADERFDFSFVSS-SLD---------TKF---VDHVVKVGGIVVIQLI 142 (208)
Q Consensus 108 ~~D~sfDFvf~~~-f~~---------~~F---IDRtLK~GGI~a~~l~ 142 (208)
+.+++||+++++- |+. .++ +-|.||+||.+.+-.+
T Consensus 294 ~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 294 VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 4556999999973 431 233 5788999999888765
No 180
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=20.36 E-value=71 Score=20.39 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=15.9
Q ss_pred chhhHHHHHHHhccccCC
Q 036071 48 NFEFLNLLFQDLGNEGLI 65 (208)
Q Consensus 48 ~~~~l~lLf~DL~~EGLL 65 (208)
..|..+.+|.+|+++||+
T Consensus 15 t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 15 TRETVSRILKKLERQGLI 32 (32)
T ss_dssp -HHHHHHHHHHHHHTTSE
T ss_pred cHHHHHHHHHHHHHcCCC
Confidence 679999999999999986
No 181
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III. Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.
Probab=20.35 E-value=1e+02 Score=26.79 Aligned_cols=28 Identities=39% Similarity=0.506 Sum_probs=23.8
Q ss_pred hHHHHHHHhccccCCCCCCeEEEeecCC
Q 036071 51 FLNLLFQDLGNEGLIKKGDKALLVGSGN 78 (208)
Q Consensus 51 ~l~lLf~DL~~EGLLk~g~KAL~vg~~~ 78 (208)
-.+.-|+++.++|-+++|++.++++.|.
T Consensus 280 s~~~~L~~~~~~~~~~~Gd~vll~~~G~ 307 (318)
T TIGR00747 280 SIPLALDELLRTGRIKPGDLLLLVAFGG 307 (318)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEEEEeh
Confidence 4456678888899999999999999887
No 182
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=20.35 E-value=27 Score=32.19 Aligned_cols=40 Identities=23% Similarity=0.204 Sum_probs=26.5
Q ss_pred eEEEeecCCCCcccc--cccccccC----ceeeeecCcccccCCCC
Q 036071 70 KALLVGSGNIGPVIA--SSKFFNDN----EIHLVVKSDLGQLGSIA 109 (208)
Q Consensus 70 KAL~vg~~~~g~~v~--~~~~l~~d----~id~V~~~Dl~~q~~~~ 109 (208)
|.++||.|..|.++- +...+..+ ++|.|..+||.+|-.|.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~ 46 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFR 46 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCC
Confidence 578888776676654 33333333 57888888888886554
No 183
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=20.15 E-value=1.1e+02 Score=26.57 Aligned_cols=27 Identities=37% Similarity=0.609 Sum_probs=22.5
Q ss_pred HHHHHHHhccccCCCCCCeEEEeecCC
Q 036071 52 LNLLFQDLGNEGLIKKGDKALLVGSGN 78 (208)
Q Consensus 52 l~lLf~DL~~EGLLk~g~KAL~vg~~~ 78 (208)
...-|+++.++|-+++|++.++++.|.
T Consensus 281 ~~~~L~~~~~~g~~~~Gd~vll~s~G~ 307 (319)
T PRK09352 281 IPLALDEAVRDGRIKRGDLVLLEGFGG 307 (319)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEEEEch
Confidence 345567777889999999999999887
No 184
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=20.07 E-value=40 Score=31.48 Aligned_cols=42 Identities=24% Similarity=0.201 Sum_probs=30.2
Q ss_pred eEEEeecCCCCcccc--cccccccC----ceeeeecCcccccCCCCCc
Q 036071 70 KALLVGSGNIGPVIA--SSKFFNDN----EIHLVVKSDLGQLGSIADE 111 (208)
Q Consensus 70 KAL~vg~~~~g~~v~--~~~~l~~d----~id~V~~~Dl~~q~~~~D~ 111 (208)
|.+++|+|..|..+- +.+.+..+ +-|.|..+++.+|.++..+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~ 48 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFE 48 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccc
Confidence 678999887776654 44555555 5688999999999865443
No 185
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=20.01 E-value=53 Score=26.96 Aligned_cols=66 Identities=21% Similarity=0.255 Sum_probs=45.6
Q ss_pred ccCCCCCCeEEEeecCCCCcccccccccccCceeeeecCcccccCCCCCcceeEEEecCCCc----cchhccceeeCCEE
Q 036071 62 EGLIKKGDKALLVGSGNIGPVIASSKFFNDNEIHLVVKSDLGQLGSIADERFDFSFVSSSLD----TKFVDHVVKVGGIV 137 (208)
Q Consensus 62 EGLLk~g~KAL~vg~~~~g~~v~~~~~l~~d~id~V~~~Dl~~q~~~~D~sfDFvf~~~f~~----~~FIDRtLK~GGI~ 137 (208)
-|+||-|-|=||+-+.. |+..+..+++ -=-||-..-+..+ .+..|..|+..++.
T Consensus 21 iG~LKVG~K~Lfl~d~~-g~~~e~~~~~---------------------cvLDFyVhes~QR~G~Gk~LF~~ML~~e~~~ 78 (120)
T PF05301_consen 21 IGFLKVGYKKLFLLDER-GQHREIEPLL---------------------CVLDFYVHESRQRRGYGKRLFDHMLQEENVS 78 (120)
T ss_pred EEEEEEeeeeEEEEcCC-CCEEEecccc---------------------eeeeEEEEeceeccCchHHHHHHHHHHcCCC
Confidence 59999999999999888 6443211110 1146665555553 55689999999999
Q ss_pred EEEec-CCCCccc
Q 036071 138 VIQLI-GDISDTY 149 (208)
Q Consensus 138 a~~l~-~~~s~af 149 (208)
..++. +.||+.|
T Consensus 79 p~~~a~DrPS~Kl 91 (120)
T PF05301_consen 79 PHQLAIDRPSPKL 91 (120)
T ss_pred cccceecCCcHHH
Confidence 99988 5576544
Done!